##maf version=1 scoring=roast.v3.3
a score=6876.000000
s hg38.chr7_GL383534v2_alt         0 2 +    119183 CA
s panTro4.chr7             143100253 2 + 161824586 CA
i panTro4.chr7             N 0 C 0
s ponAbe2.chr7             138904282 2 + 157549271 CA
i ponAbe2.chr7             N 0 C 0
s nomLeu3.chr13             93041120 2 + 110113093 CA
i nomLeu3.chr13            N 0 C 0
s rheMac3.chr3             180940061 2 + 198365852 CA
i rheMac3.chr3             N 0 C 0
s macFas5.chr3             174685992 2 + 192294377 CA
i macFas5.chr3             N 0 C 0
s papAnu2.chr3             163351441 2 + 180432695 ca
i papAnu2.chr3             N 0 C 0
s chlSab2.chr21            110383894 2 + 127223203 CA
i chlSab2.chr21            N 0 C 0
s calJac3.chr8              23729785 2 - 128169293 CA
i calJac3.chr8             N 0 C 0

a score=824968.000000
s hg38.chr7_GL383534v2_alt         2 246 +    119183 CTTTTTATTTCGACTTTTTGTAACACGTATTTGACTGTA-GTTTCAGATATTCAGGTGAAACATTCTAGAGTACCAGGATTCTGATC-TGACTTGAGAGCTCTTGATCCTATAAGGAAAATGCAGGCTTAAGTTATCTTTGCCTTGGACAAGTACATGAAAGAAAAGAAATTCTAGCTGACCTGACTACTGACTGGCTCGAGAGGTAACATAGTTAGGTACTCTCAAATTTACAGTCCAAAGTATGAC
s panTro4.chr7             143100255 246 + 161824586 CTTTTTATTTTGACTTTTTGTAACACGTATTTGACTGTA-TTTTCAGATATTCAGGTGAAACATTCTAGAGTACCAGGATTCTGATC-TGACTTGAGAGCTCTTGATCCTATAAGGAAAATGCAGGCTTAAGTTATCTTTGCCTTGGACAAGTACATGAAAGAAAAGAAATTCTAGCTGACCTGACTACTGACTGGCTCGAGAGGTAACACAGTTAGGTACTCTCAAATTTACAGTCCAAAGTATGAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138904284 245 + 157549271 CTTTTTATTTCGACTTTTTGTAACACGTATTTGACTGTA-TTTTCAGATATTCAGGTGAGACATTCTAGAGTACCAGGATTCTGATC-TGACTTGAGAGCTCTTGATCCTATAAGGAAAATGCAGGCTTAAGTTATCTTTGCCTTGGACAAGTA-ATGAAAGAAAAGAAATTCTAGCTGACCTGACTACTGACTGGCTCAAGAGGTAACATAGTTAGGTACTCTCAAATTTACAGGCCAAAGTATGAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93041122 242 + 110113093 CTTTTTATTTCGACTTTTTGTAACACGTATTTGACTGTA-TTTTCAGATATTCAGGTGAAACATTCTAGAGTACCAGGATTCTGATC-TGACTTGAGAGCTCTTGATCCTATAAGGAAAATGCAGGCTTAAGTTATCTTTGCCTTGGACAAGTACATGAAAGAAAAGAAATTCTAGCTGACCTGACTACTGACTGGCTCGAGAGGTAGCATAGT----TACTCTCAAATTTACAGTCCAAAGTATGAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180940063 240 + 198365852 CTTTTTATTTTGACTTTTTCTAGCACATATTTGACTGTA-TTTTCAGATATTCAGGTGAAACATTCTAGAGTACCAGGATTCTGATC-TCACTTGAGAGCTCTTGATCCTATAAGGAAAATGCAGGCTTAAGTTATCTTTGCCTTGGACAAGTAC-----AGGAAAGAAATTCTAGCTGACCTGACTACTGATTGGTTCAAGAAGTAACATAGTTAG-TACTCCCAAATTTACAGTCCAAAGTATGAC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174685994 240 + 192294377 CTTTTTATTTTGACTTTTTCTAGCACATATTTGACTGTA-TTTTCAGATATTCAGGTGAAACATTCTAGAGTACCAGGATTCTGATC-TCACTTGAGAGCTCTTGATCCTATAAGGAAAATGCAGGCTTAAGTTATCTTTGCCTTGGACAAGTAC-----AGGAAAGAAATTCTAGCTGACCTGACTACTGATTGGTTCAAGAAGTAACATAGTTAG-TACTCCCAAATTTACAGTCCAAAGTATGAC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163351443 240 + 180432695 ctttttattttgactttttctaGCACATATTTGACTGTA-TTTTCAGATATTCAGGTGAAACATTCTAGAGTACCAGGATTCTGATC-TGACTTGAGAGCTCTTGATCCTATAAGGAAAATGCAGGCTTAAGTTATCTTTGCCTTGGACAAGTAC-----AGGAAAGAAATTCTAGCTGACCTGACTACTGATTGGTTCAAGAAGTAACATAGTTAG-TACTCCCAAATTTACAGTCCAAAGTATGAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110383896 235 + 127223203 CTTTTTATTTTGACTTTTTCTAACACATATTTGACTGTA-TTTTCAGATATTCAGGTGAAACATTCTAGAGTACCAGGATTCTGATC-TGACTTGAGAGCTCTTGATCCT-TAAGGAAAATGCAGGCTTAAGTTATCTTTGCCTTGGACAAGTAC-----AGGAAAGAAATTCTAGCTGACCTGACTACTGATTGGTTCAAGAAGTAACA----TAA-TACTCCCAAATTTACAGTCCAAAGTATGAC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23729787 228 - 128169293 CTTTTTGTTTTGACTTTTTGTAACACATTTTTGACTGTA-TTTTCAGATATTCAGGTGAAACATTCTAGAGGACCAGGATTCTGATC-TGACTTAAGAGCTCTTGATCCTATAAGGAGAATGCAGGCTTAAATTATCTTTGCCTTGGACAAGTACATGAAATAAAAGAAATTTTAGCTGACCT------------------GAAGCAACACAGTTAGGTACTCCCTAATGTACAGTCCAAAGTATGAC
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52052534 237 -  59632846 CTTTTTATTCTGACTTGCTACATCAGATATCTGGCTGTATTTTTTAGATATTCAGGTGAAACATTCTAGAGTACCAGGATTCTCCTCTTTACTTGAGAGCACTTGGACCTCTAAAGAGAATGCAGGCTTAAATTATCTTTGCCTTGGGCAAGTCTGTGAGAGAGAAGAAATTCTGGCTGACTT-----------GGTTGAAGAGCCAGCATAGTTAGGTACTTCATAATTTACAGTCTGAAGTATAAT
i canFam3.chr16            N 0 C 0

a score=173045.000000
s hg38.chr7_GL383534v2_alt       248 41 +    119183 AGTATGTTCCCCTGCCAGCAGATTCATGAAACCTGATGTGT
s panTro4.chr7             143100501 41 + 161824586 AGTATGTTCCCCTGCCAGCAGATTCATGAAACCTGATGTGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138904529 41 + 157549271 AGTATGTTCCCCTGCCAGCAGATTCATGAAACCTGATGTGT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93041364 41 + 110113093 AGTATGTTCCCCTGCCAGCAGATTCATGAAATCTGATGTGT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180940303 41 + 198365852 AGTATGTTCCCCTGCCAGCAGATTCATGAAACCTGATGTGT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174686234 41 + 192294377 AGTATGTTCCCCTGCCAGCAGATTCATGAAACCTGATGTGT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163351683 41 + 180432695 AGTATGTTCCCCTGCCAGCAGATTCATGAGACCTGATGTGT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110384131 41 + 127223203 AGTATGTTCCCCTGCCAGCAGATTCATGAAACCTGATGTGT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23730015 41 - 128169293 AGTATGTTCCCCCGCCAGCAGATTCATGAAACCTAATATGT
i calJac3.chr8             C 0 I 309
s mm10.chr6                 40380971 34 + 149736546 AATATGTTCCCTT-------AATTTGTGAGAACTGATACAT
i mm10.chr6                N 0 C 0
s canFam3.chr16             52052771 41 -  59632846 AATATGTTCCCTTGCCAGCAAATTCATGAGGCCTAGTATAT
i canFam3.chr16            C 0 C 0

a score=9342694.000000
s hg38.chr7_GL383534v2_alt       289 2651 +    119183 AAAAATTACCTTCATATTACAGTGTGGCTTATTCAAGTATTTTTACTAAGCACTCACAGGGTTAATGTCTTTAATGTTTGAGCAGAC-TTTTTAGAATTTTGGTTTGATGAAAAGT----AGGCCA------TGAACATTTGCTGAGTACTTAGATGTAAAGAGTTCTGAG----TGATTATAGTCATGAATTTAAATGAAATGTATTTAACTTCCAGGGTGAAAAGGAACAGCCTGTATTTGCAATGACCGGCCTTCGATGGGGATCTTTCAGAGATGCTGGCGTCAAAGTTAGCAAGTAAAGGATTACTATATTGATGTGTGAT--GTTTTT-TAAAAAAATCTTATTCTGTCCCTGCCTTTCAGGTTTTAATTCACAGTGATCTTCTGGGAATAAATTTGGTGGGCCTGGAGGTTGAATTATGTGTGAATAATGGAGGTAGGAACAATCAGGTAGAGGTTTATGTCCTATATGCAGAAAGGCTGGGGAAAGTTGCAGCTTCCTCAACACTAGCTGGGCAGTAGCTGAAGAGGAGAAGGGTATGTCTCTATTTTTAGACACACTATTTGAGCATAGGTTAGGCTCAAGCTAGGCTGTAGGGAGAACTGGATTGCCTATCATTCTGCAGC----TGCTTAGCTGGGTACCAAGTGGAAGGGACTGCCTGGGCTACAG-CCTTACGGAGCT------------GTTGCA------GTCAGACAACTTTTCCTGAGAGGTATTTTTG-TGAAGGC-CTCGCAGATTGGGAGACCACAGGCCGCT-GCTCTTAGAGGAGGAAGAAAGGCGGCGCCTGGCTGTGCTGTGAGATGGGAGAAACAGGCCTATCGAGGAGCTGATTAGAGGGCCAGTGTTGGCTTTTCATGAGAATTGACTTA-TTTTTGGAGAATCCATTGTATGCAATGAAACTCTTGGCTTGGAGAGAGGGTGTGTCATGTTCCATTTGCTGTGGAGAGGTAAAG-TAGGCAAGGGCTTGCTGA-GCAGGACTGCAGGGGACACCATGTGAGATTCGCTTCATACCT----GGT-GGTGGTATTTTCTCTTTACCTTTTCTTAAAATCGAGGGCTTACAGTTTGAGTATAGTTTAAATGAATTGTGGCTGATCTCACACATAGCTCT----CAAGAAATTGCTCTTTCACTTAATAGGCCAGCCTGCCATGC---TTTTTTT-------TTTTTTTT----------------------------------------------------------------------------------AACAGAAATTTCTCTCACTTGTTTCACTTTATTATTCTTGCTAATGAGA--TTCCTGACAGTGAAATGTCAAAAGAGAGACATTACCATATTATATTACACATTGCATTCTGAAGTATTTCACATC-TTTTTATTTGCAAGTGTGCCATGATTATG-GGATTCTACAAATTACC-TTGTGTTTGATCTGAAATCTCAAA-T-CCAGCAGCTCACCAAGAGAAACTGCTTAGCTTTCCCCAAAAAAGTCTGGTTAGGACAAATTGCTTTCCAAAATGTGTTAAGCAACAAGAAAGCAC-AGTACAGATCAACGCTTTTAGGACTATTTTATATACTAGCCCCATATCTCGATTGGTTTCTGCACAAAGAATTTTAAAATTCTGATTGTTATTATGTGCTACCTTGGCTAGGCCCTTCCACAGAGTTGCTGTTTGTATTAAGAAAGAAATGGTAGAGATATGAGAAATCATTTCCTAGCTGGCTGTAGGAAGACTACAAAGTCAGTGGCAAAATGTACTATTGGTAGAGATGAAGGAAACTGAGGAAATTTTAGAAGGTAACTGCCTGAGTTGAGATGACCTTCTACTTGGCTAACTAGGGAAAGAAGCAAACTATAAAGTAAATTTTAA---AAAATAATAACACAAAAAATCAGATGATCAAGGGCCTCATTAGTAGTAGCACAGTATCAACCTGAATAATAATTTAGAATGTTTCTGCATTCCCTCTTGGATTATATCTAAGCTCTTTG-TCTGTTATTCCAGGCCCAACTTACTCTGTCA----TCACCCCTAATTA--TATAATTATGTATCTTTACTTCTAAGCTTTT-----------------------------------------CTCTCTTTCTC----TGACTGTTATCCTATTTCCCATA--------------------CTCTAA-GTTTTGTACCCTGACTTTATTC-TGTGCC--------ATTCATTTTATAGGCATGGCTGCTCCAGTGAT--TTTAGGC--------------------------CCTTAATGAC--TTTGTCTCTTTTTGATTCCCCTTACCAATAAGCAGTGATCAGTTTATGCTTTTCCTTAT--AGTCATTCATTGTTTGCTTTTACATATTTGGGTC--TTATTTTCTCAAATCATAAGCTCTCAAAGGTGGGAAATTTATACTT----------TATATTTCTTCTGT-------TTCCTCCGCATTCATAGTGGGTGCTAAATAAATGTATA-TGATCAGAATC-AACAGAGAGCAGTTAATGTTGAGTGATTTGTTAACAG--AGATAAGTTTTAAGAGAAGAATCTATTTTATGCCG-TTTTCTAATTCCGATTAGGTGTCTTCCTCTCTCCAGTAGCTTTTATGTATTTAGCAATATGca----atagattctcgttattcccagatttaacatttgccattttagagctatataacatgagtaatgtgaaattatgctggtttacacatttttaattgagtgtgcatatgtgc------------------atttgtgtgtgt----------gagaggacatggtgtacaggatctagtcatttagcttgggatcagcacatcagagcatgcagtgtttgcatcttagtgtggctgtatcatcctttactcatAGCTCTTTTGAA
s panTro4.chr7             143100542 2643 + 161824586 AAAAATTACCTTCATATTACAGTGTGGCTTATTCAAGTATTTTTACTAAGCACTCACAGGGTTAATGTCTTTAATGTTTGAGCAGAC-TTTTTAGAATTTTGGTTTGATGAAAAGT----AGGCCA------TGAACATTTGCTGAGTACTTACATGTAAAGAGTTCTGAG----TGATTGTAATCATGAATTTAAATGAAATGTATTTAACTTCCAGGGTGAAAAGGAACAGCCTGTATTTGCAATGACCGGCCTTCGATGGGGATCTTTCAGAGATGCTGGCGTCAAAGTTAGCAAGTAAAGGATTACTATATTGATGTGTGAT--GTTTTT-TAAAAAAATCTTATTCTGTCCCTGCCTTTCAGGTTTTAATTCACAGTGATCTTCTGGGAATAAATTTGGTGGGCCTGGAGGTTGAATTATGTGTGAATAATGGAGGTAGGAACAATCAGGTAGAGGTTTATGTCCTATATGCAGAAAGGCTGGGGCAAGTTGCAGCTTCCTCAACACTAGCTGGGCAGTAGCTGAAGAGGAGAAGGGTATGTCTCTATTTTTAGACACACTATTTGAGCATAGGTTAGGCTCAAGCTAGGCTGTAGGGAGAACTGGATTGCCTATCATTCTGCAGC----TGCTTAGCTGGGTACCAAGTGGAAGGGACTGCCTGGGCTACAG-CCTTACGGAGCT------------GTTGCA------GTCAGACGACTTTTCCTGAGAGGTATTTTTG-TGAAGGC-CTCGCAGATTGGGAGACCACAGGCCGCT-GCTCTTAGAGGAGGAAGAAAGGCGGCGCCTGGCTGTGCTGTGAGATGGGAGAAACAGGCCTATCGAGGAGCTGATTAGAGGGCCAGTGTTGGCTTTTCATGAGAATTGACTTA-TTTTTGGAGAATCCATTGTATGCAATGAAACTCTTGGCTTGGAGAGAGGGTGTGTCATGTTCCATTTGCTGTGGAGAGGTAAAG-TAGGCAAGGGCTTGCTGA-GCAGGACTGAAGGGGACACCATGTGAGATTCGCTTCATACCT----GGT-GGTGGTATTTTCTCTTTACCTTTTCTTAAAATCGAGGGCTTACAGTTTGAGTATAGTTTAAATGAATTGTGGCTGATCTCACACATAGCTCT----CAAGAAATTGCTCTTTCACTTAATAGGCCAGCCTGCCATGC---TTTTTTT-------TTTTTTTTT---------------------------------------------------------------------------------AACAGAAATTTCTCTCACTTGTTTCACTTTATT---CTTGCTAATGAGA--TTCCTGACAGTGAAATGTCAAAAGAGAGACATTACCATATTATATTACATATTGCATTCTGAAGTATTTCACATC-TTTTTATTTGCAAGTGTGCCATGATTATG-GGATTCCACAAATTACC-TTGTGTTTGATCTGAAATCTCAAA-T-CCAGCAGCTCAGCAAGAGAAACTGCTTAGCTTTCCCCAAAAAAGTCTGGTTAGGACAAATTGCTTTCCAAAATGTGTTAAGCAACAAGAAAGCAC-AGTACAGATCAACACTTTTAGGACTATTTTATATACTAGCCCCATATCTCGATTGGTTTCTGCACAAAGAATTTTAAAATTCTGATTGTTATTATGTGCTACCTTGGCTAGGCCCATCCACAGAGTTGCTGTTTGTATTACGAAAGAAATGGTAGAGATATGAGAAATCATTTCCTAGCTGGCTGTAGGAAGACTACAAAGACAGTGGCAAAATGTACTATTGGTAGAGGTGAAGGAAACCGAGGAAATTTTAGAAGGTAACTGCCTGAGTTGAGATGACCTTCTACTTGGCTAACTAGGGAAAGAAGCAAGCTATAAAGTAAATTTTAA---AAAATAATAACACAAAAAATCAGATGATCAAGGGCCTCATCAGTAGTAGCACAGTATCAACCTGAATAATAATTTAGAATGTTTCTGCATTCCCTCTTGGATTATATCTAAGCTCTTTG-TCTGTTATTCCAGGCCCAACTTACTCTGTCA----TCACCCCTAATTA--TATAATTATGTATCTTTACTTCTAAGCTTTT-----------------------------------------CCCTCTTTCTC----TGACTGTTATCCTATTTCCCATA--------------------CTCTAA-GTTTTGTACCCTGACTTTATTC-TGTGCC--------ATT----TTATAGGCATGGCTGCTCCAGTGAT--TTTAGGC--------------------------CCTTAATGAC--TTTGTCTCTTT--AATTCCCCTTACCAATAAGCAGTGATCAGTTCATGCTTTTCCTTAT--AGTCATTCattgtttgcttttacatatttgggtc--ttattttctcaaatcataagctctcaaaggtgggaaatttatactt----------tatatttcttctgt-------ttcctccgcattcatagtgagtgctaaataaatgtATA-TGATCAGAATC-AACAGAGAGCAGTTAATGTTGAGTGATTTGTTAACAG--AGATAAGTTTTAAGAGAAGAATCTATTTTATGCCA-TTTTCTAATTCTGATTAGGTGTCTTCCTCTCTCCAGTAGCTTTTATGTATTTAGCAATATGca----atagattctcattattcccagatttaacatttgccattttagagctatataacatgagtaatgtgaaattatgctggtttacacatttttaattgagtgtgcctatgtgc------------------atttgtgtgtgt----------gagaggacatggtgtacaggatctagtcatttagcttgggatcagcacatcagagcatgcagtgtttgcatcttagtgtggctgtatcatcctttactcatAGCTCTTTTGAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138904570 2647 + 157549271 AAAAATTACCTTCATGTTACAGTGTGGCTTATTCAAGTATTTTTACTAAGCACTCACAGGGTTAATGTCTTTAATGTTTGAGCAGAC-TTTTTAGAATTTTGATTTGATGAAAAGT----AGGCCA------TGAACATTTGCTGAGTACTTACATGTAAAGAGTTCCGAG----TGATTGTAATCATGAATTTAAATGAAATTTATTTAACTTCCAGGGTGAAAAGGAACAGCCTGTGTTTGCAATGACCGGCCTTCGATGGGGATCTTTCAGAGATGCTGGCGTCAAAGTTAGCAAGTAAAGGATTACTATATTGATGTGTGAT--GTTTTT-TAAAAAAATCTTATTCTGTCCCTGACTTTCAGGTTTTAACTCACAGTGATCTTCTGGGAATAAATTTGGTGGGCCTGGAGGTTGAAATATGTGTGAATAATGGAGGTAGGAACAATCAGGTAGAGGTTTATGTCCTATATGCAGAAAGGCTGGGGAAAGTTGCAGCTTCCTCAACACTAGCTGGGCAGTAGCTGAAGAGGAGAAGGGTATGTCTCTATTTTTAGACACACTACTTGAGCATAGGTTAGGCTCAAGCTAGGCTGTAGGGAGAACTGGATTGCCTATCATTCTGCAGC----TGCTTAGCTGGGTACCAAGTGGAAGGGACTGCCTGGGCTACAG-CCTTACGGAGCT------------GTTGCA------GTCAGACGGCTTTTCCTGAGAGGTATTTTTG-TGAAGTC-CTCGCAGATTGGGAGACCACAGGCCGCT-GCTCTTAGAGGAAGAAG---GGCAGCGCCTGGCTGTGCTGTGAGATGGGAGAAACAGGCCTATCGAGGAGCTGATTAGAGGGCCAATGTTGGCTTTTCATGAGAATTGACTTA-TTTTTGGAGAATCCATTGTATGCAATGAAACTCTTGGCTTGGAGAGAGGGTGTGTCGTGTTCCATTTGCTGTGGAGAGGTAAAG-TAGGCAAGGGCTTGCTGA-GCAGGACTGAAGAGGACACCATGTGAGATTCGCTTCATACCT----AGT-GGTGGTATTTTCTCTTTACCTTTTCTTAAAATCGAGGGCTTACAGTTTGAGTATAGTTTAAATGAATTGTGGCTGATCTCACACATAGCTCT----CAAGAAATTGCCCTTTCACTTCATAGGCCAGCCTGCCATGC---TTTTTTT-------TTTTTTT-----------------------------------------------------------------------------------AACAGAAATTTCTCTCACTTGTTTCACTTTATTATTCTTGCTAATGAGA--TTCCTAACAGTGGAATGTCAAAAGAGAGACATTACCATATTATATTACACATTGCATTCTGAAGTATTTCACAT--TTTTTATTTGCAAGTGTGCCATGATTATG-GGATTCCATGAATTACC-TTGTGTTTGATCTGAAATCTCAAA-T-CCAGCAACTCACCAAGAGAAACTGC-TAGCTTTCCCTAAAGAAGTCTGGTTAGGACAAATTGCTTTCCAAAATGTGGTAAGCAACAAGAAAGCAC-AGTACAGATCAACGCTTTTAGGACTATTTTATATACTAGCCCCATATCTCGATTGGTTTCTGAACAAAGAATTCTAAAATTCTGATTGTTATTATGTGCTACCTTGGCTAGACCCATCCACAGAGTTGCTGTTTGTATTAAGAAAGAAATGGTAGAGATATGAGAAATCATTTCCTAGCTGGCTGTAGGAAGACTACAAAGACAGTGGCAAAATGTACTATTGGTAGAGATGAAGGAAACTGAGGAAACTTTAGAAGGTAACTGCCTGAGTTGAGATGACCTTCTACTTGGCTAACTAGGGAAAGAAGCAAACTATAGAGTAAATTTTAA---AAAATAATAACACAAAAAATCAGATGATCAAGGGCCTCATTAGTAGTAGCACAGTATCAACCTGAATAATAATTTAGAATGTTTCTGCATTCCCCCTTGGATTATATCTAAGCTCTTTG-TCTGTTATTCCAGGCCCAACTTACTCTGTCA----TCACCCCTAATTA--TATAATTATGTATCTTTACTTCTAAGCTTTT-----------------------------------------CCCTCTTTCTC----TGGCTGTTATCCTATTTCCCATA--------------------CTCTAA-GTTTTGTACCCTGACTTTATTC-TGTGCC--------ATTCATTTTACAGGCATGGCTGCTCCAATGAT--TTTAGGC--------------------------CCTTAATGACTTTTTGTCTCTTTTTGATTCCCCTTACCAATAAGCAGTGATCAGTTTATGCTTTTCCATAT--AGTCATTCattgtttgcttttacttatttgggtc--ttattttctcaaatcataagctctcaaaggtgggaaatttatactt----------tatatttcttctgt-------ttcctccacattcatagtgggtgctaaataaatgtATA-TGATCAGAATC-AACAGAGAGCAGTTAATGTTGAGTGCTTTGTTAACAG--AGATAAGTTTTAAGAGAAGAATCTATTTTATGCCG-TTTTCTAATTCCGATTAGGTGTCTTCCTCTCTCCAGTAGCTTTTATGTATTTAGCAATATGca----atagatttttgttattcccagatttaacatttgccattttagagctatataacatgagtaatgtgaaattatgctggtttacacatttttaattgagtgtgcatatgtgc------------------atttgtgtgtgt----------gagaggacatggtgtacaggatctagtcatttagcttgggatcagcacatcagagcatgcagtgtttgcatcttagtgtggctgtatattcctttactcatAGCTCTTTTGAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93041405 2656 + 110113093 AAAAATTACCTTCATATTACAGTGTGGCTTATTCAAGTATTTTTACTAAGCACTCACAGGGTTAATGTCTTTAATGTTTGAGCAGAC-TTTCTAGAATTTGGGTTTGATGAAAAGT----AGGCCA------TGAACATTTGTTGAGTACTTACATGTAAAGAGTTCCAAG----TGATTGTAATAATGAATTTAAATGAAATGTATTTAACTTCCAGGGTGAAAAGGAACAGCCTGTGTTTGCAATGACCGGCCTTCGATGGGGATCTTTCAGAGATGCTGGCGTCAAAGTTAGCAAGTAAAGGATTACTATATTGATGTGTGAT--GTTTTT-TAAAAAAATCTTATTCTGTCCCTGCCTTTCAGGTTTTAACTCACAGTGATCTTCTGGGAATAAATTTGGTGGGCCTGGAAGCTGAATTATGTGTGAATAATGGAGGTAGGAACAATCAGGTAGAGGTTTATGTCCTATATGCAGAAAGGCTGGGGAAAGTTGCAGCTTCCTCAATACTAGCTGGGCAGTAGCTGAAGAGGAGAAGGGTATGTCTCTATTTTTAGACACACTATTTGAGCATAGGTTAGGCTCAAGCTAGGCTGTAGGGAGAACTGGATTGCCTATCATTCTGCAGC----TGCTTAGCTGGGTACCAAGTGGAAGGGACTGCCTGGGCTACAG-CCTTACGGAGCT------------GTTGCA------GTCAGACGACATTTCCTGAGAGGTATTTTTG-TGAAGGC-CTCGCAGATTGGGAGACCACAGGCCGCT-GCTCTTAGAGGAGGAAGAAAGGCGGCGCCTGGCTGTGCTGTGAGATGGGAGAAACAGGCCTATTGAGGAGCTAATTAGAGGGCCAGCATTGACTTTTCATGGGAATTGACTTA-TTTTTGGAGAATCCATTGTATGCAATGAAACTCTTGGCTTGGAGAGAGGGTGTGTCGTGTTCCATTTGCTGTGGAGAGGTAAAG-TAGGCAAGGGCTTGCTGA-GCAGGACCGAAGGGGACACCATGTGAGATTCGCTTCATACCTGGTAGGT-GGTGGTGTTTTCTCTTTACTTTTTCTTAAAATCAAGGGCTTACAGTTTGAGTATAGTTTAAATGAATTGTGGCTGATCTCACACATAGCTCT----CAAGAAATTTCTCTTTCACTTCATAGGCCAGCCTGCCATGC---TTTTTTT-------TTTTTTT-----------------------------------------------------------------------------------AACAGAAATTTCTCTCACTTGTTTCACTTTATTATTCTTGCTAATGAGA--TTCCTGACAGTGGAATGTCAAAAGAGAGACATTACCATATTATATTACACTTTGCATTCTGAAGTATTTCATATC-TTTTTATTTGCAAGTGTGCCATGATTATG-GGATTCCACAAATTACC-TTGTGTTTGATCTGAAATCTCAAA-T-CCAGCAGCTCACCAAGAGAAACTGCTTAGCTTTCCCTAAAAAAGTCTGGTTAGGACAAATTGCTTTCCAAAATGTGGTAATTAACAATAAAGCAC-AGTACAGGTCAATGCCTTCAGGACTACTTTATATACTTGCCCCATATCTCGATTGGTTTCTGAACAAAGAATTTTAAAATTCTGATTGTCATTATGTGCTACCTTGGCTAGGCCCATCCACAGAGTTGCTCTTTGTATTAAGAAAGAAATGGTAGAGATATGAGAAATCATTTCCTAGCTGGCTATAGGAAGACTACAAAGACAGTGGCAAAATGTACTATTGGTAGAGATGAAGGAAACTGAGGAAACTTTAGAAGGTAACTGCCTGAGTTGAGATGACCTTCTACTTGGCTAACTAGGGAAAGAAGCAAACTATAAAGTAAATTTTAA---AAAACACTAACACAAAAAATCAGATGATCAAGGGCCTCATTAGTAGTAGCACAATATCAACCTGAGTAATAATTTAGAATGTTTCTGCATTCCTTCTTGGATTATATCTAAGCTCTTTG-TCTGTTATTCCAGGCCCAACTTACTCTGTCA----TCACCCCTAATTA--TATAATTATGTATCTTTACTTCTAAGCTTTT-----------------------------------------CCCTCTTTCTC----TGGCTGTTATCCTATTTCCCATA--------------------CTCTAA-GTTTTGTACCCTGACTTTATTC-TGTGCC--------ATTCATTTTATAGGCATGGCTGCTCCAATGAT--TTTAGGC--------------------------CCTTAATGATTTTTTGGCTCTTTTTGATTCCCCTTACCAATAAGCAGTGATCAGTTTATGCTTTTCCATAT--AGTCATTCattgtttgcttttacttatttgggtc--ttattttctcaaatcataagctctcaaaggtgggaaatttatactt----------tatatttcttctgt-------ttcctccacattcatagtgggtgctaaataaatgtATA-TGATCAGAATC-AATAGAGAGCAGTTAATGTTGAATGATTTGTTAACAG--AGATAAGTTTTAAGAGAAGAATCTATTTTATGCTG-TTTTCTAATTCTGATTAGGTGTCTTCCTCTCTCCAGTAGCTTTTACGTATTTAGCAATATGca----atagattcttgttattcccagatttaacatttgccattttagagctatataacatgagtaatgtgaaattatgctggtttacacgtttttaattgagtgtgcctatgtgc------------------atttgtgtgtgt----------gagaggacatagtgtacaggatctagtcgtttagcttgggatcagcacatcagagcatgcagtgtttgcatcttagtatggctgcatcatcctttactcatAGCTCTTTTGAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180940344 2650 + 198365852 AAAACTTCCCTTCAT-TTACAGTGTGGCTTATTCAAGTATTTTTACTGAGCACTCACAGGGTTAATGTCTTTAATGTTTGAGCAGAC-TTTTTAGAATTTTGGTTTGATGAAAAGT----AGGCCA------TGAACATTTGCTGAGTGCTCACATGTGAAGAGTTCCAAGTGACTGATTGTAATCATGAATTTAAATGAAATGTGTTTAACTTCCAGGGTGAAAAGGAACAGCCTGTGTTTGCAATGACCGGCCTCCGATGGGGATCTTTCAGAGATGCTGGCGTCAAAGTTAGCAAGTAAAGGATTACTATATTGATGTGTGAT--TTTTTTAAAAAAAAATCTTATTCTGTCCCTGCCTTTCAGGTTTTAACTCACAGAGATCTTCTGGGAATAAATTTGGTGGGTCTTGAGGTTGAATTATGTGTGAATAATGGAGGTAGGAACAATCAGGTAGAAGTTTATGTCCTATATGCAGAAAGGCTGGGGAAGGTTGCAGCTTCCTCAACATTAGCTGGGCAGTAGCTGAAGAGGAGAAGGGTATGTCTCTATTTTTAGGCACAATATTTGAGCATAGGTTAGGCTCAAGCTAGGCTGTAGGGAGAACTGGATTGCCAGTCATTCTGCAGC----TGCTTAGCTGGCTACCAAGTGGAAGGGACTGCCTGGGCTACAG-CCTTACGGCACT------------GTTGCA------GTCGGACAACTTTTCCTGAGAGGTATGTTTG-TGAAGGC-CTCGCAGATTGGAAGACCACAGGCCGCT-GCTCTTAGAGGAGGAAGAAAGGCGGCGCCTGGCTGTGCCGTGAGGCGGGAGAAACAGGCCTGCTGAGGAGCTGATGAGAGGGCCAGCACTGGGTTTTCATGGGAATTGACTTA-TTTTTGGAGAATCCATTGTGTGCGGTGAAACTCTTGGCTTGGAGAGAGGGTGTGTTGTGTTCCATCTGCTGTGGAGAGGTAAAGTTAGGCAAGGGCTTGCTGA-GCAGGACTAAAGGGGACACCGTGTGAGATTTGCTTCATACCT----GGTGGGTGGTATTTTCTCTTTACTTTTTCTTAAAATCGAGGGCTTACAGTTTGAGTATAGTTTAAATGAATTGTGGTTGATCTCACACATAGCTCT----CAAGAAATTGCTCTTTCACTTGATAGGCCAGCCTGCCATGC-----TTTTT-------TTTTTTTT----------------------------------------------------------------------------------TACAGAAATTTCTCTCACTTGTTTCACTTTATTATTCTTGCTAATGAGA--TTCCTGACAGTGCAATGTCAAAAGAGAGACATTACCATATTATATTACATGTTGCATTCTGAAGTATTTCGCATC-TTTTTATTTGCAAGTGTGCCATGATTATG-GGGTTCCACAAATTACC-TTGTGTTTGATCTGAAATCTCAAA-T-CCAGCAGCTCACCAAGTGAAACTGCTTAGCTTTCCCTAAAAAAGTCTGGTTAGGACAAATTGCTTTCCAAAATGTGTTAAGCAACAGTAAAGCAC-AGTACAGGTCAACACTTTCAGGGCTACTTTATATACTTGCCCCATATCTTGGTTGGTTTCTGAACAAAGAATTTTAAAATTCTGATTGTCATTACGTGCTGCCTTGGCTAGGCCCATCCACTGAGTTGCTCTTTGTATTAAGAAAGAAATGGTAGAGATAGGAGAAATCATTTCCTAGCTGGCTATA-GAAGACTAC-AAGACAGTGGCAAAATGTACTATTGGTAGAGATGAAGGAAACTGAGGAATATGTAGAAGGTAACTGCCTGAGTTGAGATGACCTTCTACTTGGCTAACTAGGGAAAGAAGCAAACTATAAAGGAAATT-Taa---aaaa-aaaaaaaaaaaaaaTCAGATGATC-AGGGCCTCATTAGTAGTAGCACAATATCAACCTGAATAATAATTTAGAATGTTTCTGCATTCCCTCTTGGATTATATCTAAGCTCTTTG-TCTGTTATTCCAGGCCCAACTTTCTCTGTCA----TCACCCCTAATTA--TGAAATTATGCATCTTTACTTCTAAGCTTTT-----------------------------------------CCCTCTTTCTC----TGGCTGTTATCCTGTTTCCCATA--------------------CTCTAA-GTTTTGTACCCTGACTTTATTC-TGTGCC--------ATTCATTTTATAAGCATGGCTGCTCCAATGAT--TTTAGGC--------------------------CCTTAATGATTTTTTGTCTCTTTTTGATTCCCCTTACCAATAAGCAGTGATCAGTTTATGCTTTTCTGTAT--AGTCATTCattgtttgcttttacttatttgggtc--ttattttctcaaatcataagctcccaaa-gagggaaatttatactt----------tatatttcttctgt-------ttcctccacattcatagtggatgctaaataaatgtATA-TGATCAGAATC-AATAGAGAGCAGTTAATGGTGAGTGATTTGTTAACAG--AGATAAGTTTTAAGAGAAGAATCTACTTTATGCCA-TTTTCTAATTCCGATTAGGTGTCTTCCTCTCTCCAGTAGCTTTTATGTATTTAGCAATAAGca----atagattctcgttattcccagatttaacatttgccattttgaagctgtataacaggagtcatgtgaaattatgctggtttgcaca-tttaaattgagtgtgcatatgtgc------------------gtttgtttgtgt----------gagaggacatggtgtacaggatctagtcatttagcttgggatcagcacatcagagcatgcagtgtctgcatcttcgtgtggctgcatcatcctttactcatagccCTTTTGAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174686275 2654 + 192294377 AAAACTTCCCTTCAT-TTACAGTGTGGCTTATTCAAGTATTTTTACTGAGCACTCACAGGGTTAATGTCTTTAATGTTTGAGCAGAC-TTTTTAGAATTTTGGTTTGATGAAAAGT----AGGCCA------TGAACATTTGCTGAGTGCTCACATGTGAAGAGTTCCAAGTGACTGATTGTAATCATGAATTTAAATGAAATGTGTTTAACTTCCAGGGTGAAAAGGAACAGCCTGTGTTTGCAATGACCGGCCTCCGATGGGGATCTTTCAGAGATGCTGGCGTCAAAGTTAGCAAGTAAAGGATTACTATATTGATGTGTGAT--TTTTTAAAAAAAAAATCTTATTCTGTCCCTGCCTTTCAGGTTTTAACTCACAGAGATCTTCTGGGAATAAATTTGGTGGGTCTTGAGGTTGAATTATGTGTGAATAATGGAGGTAGGAACAATCAGGTAGAGGTTTATGTCCTATATGCAGAAAGGCTGGGGAAGGTTGCAGCTTCCTCAACATTAGCTGGGCAGTAGCTGAAGAGGAGAAGGGTATGTCTCTATTTTTAGGCACAATATTTGAGCATAGGTTAGGCTCAAGCTAGGCTGTAGGGAGAACTGGATTGCCAGTCATTCTGCAGC----TGCTTAGCTGGCTACCAAGTGGAAGGGACTGCCTGGGCTACAG-CCTTACGGCGCT------------GTTGCA------GTCGGACAACTTTTCCTGAGAGGTATGTTTG-TGAAGGC-CTCGCAGATTGGAAGACCACAGGCCGCT-GCTCTTAGAGGAGGAAGAAAGGCGGCGCCTGGCTGTGCCGTGAGGCGGGAGAAACAGGCCTGCTGAGGAGCTGATGAGAGGGCCAGCACTGGGTTTTCATGGGAATTGACTTA-TTTTTGGAGAATCCATTGTGTGCGGTGAAACTCTTGGCTTGGAGAGAGGGTGTGTTGTGTTCCATCTGCTGTGGAGAGGTAAAGTTAGGCAAGGGCTTGCTGA-GCAGGACTAAAGGGGACACCGTGTGAGATTTGCTTCATACCT----GGTGGGTGGTATTTTCTCTTTACTTTTTCTTAAAATCGAGGGCTTACAGTTTGAGTATAGTTTAAATGAATTGTGGCTGATCTCACACATAGCTCT----CAAGAAATTGCTCTTTCACTTGATAGGCCAGCCTGCCATGC---TTTTTTT-------TTTTTTTT----------------------------------------------------------------------------------TACAGAAATTTCTCTCACTTGTTTCACTTTATTATTCTTGCTAATGAGA--TTCCTGACAGTGCAATGTCAAAAGAGAGACATTACCATATTATATTACATGTTGCATTCTGAAGTATTTCGCATC-TTTTTATTTGCAAGTGTGCCATGATTATG-GGGTTCCACAAATTACC-TTGTGTTTGATCTGAAATCTCAAA-T-CCAGCAGCTCACCAAGTGAAACTGCTTAGCTTTCCCTAAAAAAGTCTGGTTAGGACAAATTGCTTTCCAAAATGTGTTAAGCAACAGTAAAGCAC-AGTACAGGTCAACACTTTCAGGGCTACTTTATATACTTGCCCCATATCTTGGTTGGTTTCTGAACAAAGAATTTTAAAATTCTGATTGTCATTACGTGCTGCCTTGGCTAGGCCCATCCACTGAGTTGCTCTTTGTATTAAGAAAGAAATGGTAGAGATAGGAGAAATCATTTCCTAGCTGGCTATA-GAAGACTACAAAGACAGTGGCAAAATGTACTATTGGTAGAGATGAAGGAAACTGAGGAATATGTAGAAGGTAACTGCCTGAGTTGAGATGACCTTCTACTTGGCTAACTAGGGAAAGAAGCACACTATAAAGGAAATTaaaa---aaaa-aaaaaaaaaaaaaaTCAGATGATC-AGGGCCTCATTAGTAGTAGCACAATATCAACCTGAATAATAATTTAGAATGTTTCTGCATTCCCTCTTGGATTATATCTAAGCTCTTTG-TCTGTTATTCCAGGCCCAACTTTCTCTGTCA----TCACCCCTAATTA--TGAAATTATGCATCTTTACTTCTAAGCTTTT-----------------------------------------CCCTCTTTCTC----TGGCTGTTATCCTGTTTCCCATA--------------------CTCTAA-GTTTTGTACCCTGACTTTATTC-TGTGCC--------ATTCATTTTATAAGCATGGCTGCTCCAATGAT--TTTAGGC--------------------------CCTTAATGATTTTTTGTCTCTTTTTGATTCCCCTTACCAATAAGCAGTGATCAGTTTATGCTTTTCTGTAT--AGTCATTCATTGTTTGCTTTTACTTATTTGGGTC--TTATTTTCTCAAATCATAAGCTCCCAAA-GTGGGAAATTTATACTT----------TATATTTCTTCTGT-------TTCCTCCACATTCATAGTGGATGCTAAATAAATGTATA-TGATCAGAATC-AATAGAGAGCAGTTAATGGTGAGTGATTTGTTAACAG--AGATAAGTTTTAAGAGAAGAATCTACTTTATGCCA-TTTTCTAATTCCGATTAGGTGTCTTCCTCTCTCCAGTAGCTTTTATGTATTTAGCAATAAGCA----ATAGATTCTCGTTATTCCCAGATTTAACATTTGCCATTTTGAAGCTGTATAACAGGAGTCATGTGAAATTATGCTGGTTTGCACA-TTTTAATTGAGTGTGCATATGTGC------------------GTTTGTTTGTGT----------GAGAGGACATGGTGTACAGGATCTAGTCATTTAGCTTGGGATCAGCACATCAGAGCATGCAGTGTCTGCATCTTCGTGTGGCTGCATCATCCTTTACTCATAGCCCTTTTGAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163351724 2657 + 180432695 AAAACTTCCCTTCAT-TTACAGTGTGGCTTATTCAAGTATTTTTACTGAGCACTCACAGGGTTAATGTCTTTAATGTTTGAGCAGAC-TTTTTAGAATTTTGGTTTGATGAAAAGT----AGGCCA------TGAACATTTGTTGAGTACTCACATGTAAAGAGTTCCAAGTGACTGATTGTAATCATGAATTTAAATGAAATGTGTTTAACTTCCAGGGTGAAAAGGAACAGCCTGTGTTTGCAATGACCGGCCTCCGATGGGGATCTTTCAGAGATGCTGGCGTCAAAGTTAGCAAGTAAAGGATTACTATATTGATGTgtgat--gtttttttaaaaaaatcttattctgTCCCTGCCTTTCAGGTTTTAACTCACAGAGATCTTCTGGGAATAAATTTGGTGGGCCTTGAGGTTGAATTATGTGTGAATAATGGAGGTAGGAACAATCAGGTAGAGGTTTATGTCCTACATGCAGAAAGGCTGGGGAAGGTTGCAGCTTCCTCAACACTAGCTGGGCAGTAGCTGAAGAGGAGAAGAGTATGTCTCTATTTTTAGGCACAATATTTGAGCATAGGTTAGGCTCAAGCTAGGCTGTAGGGAGAACTGGATTGCCAGTCATTCTGCAGC----TGCTTAGCTGGCTACCAAGTGGAAGGGACTGCCTGGGCTACAG-CCTTATGGCGCT------------GTTGCA------GTCGGACAACTTTTCCTGAGAGGTATGTTTG-TGAAGGC-CTCGCAGATTGGAAGACCACAGGCCGCT-GCTcttagaggaggaagaaaggcgGCGCCTGGCTGTGCCGTGAGGTGGGAGAAACAGGCCTGTTGAGGAGCTGATGAGAGGGCCAGCACTGGGTTTTCATGGGAATTGACTTA-TTTTTGGAGAATCCATTGTGTACGGTGAAACTCTTGGCTTGGAGAGAGGGTGTGTTGTGTTCCATCTGCTGTGGAGAGGTAAAGTTAGGCAAGGGCTTGCTGA-GCAGGACTAAAGGGGACACCGTGTGAGATTTGCTTCGTACCT----GGTGGGTGgtattttctctttactttttcttaaaatcGAGGGCTTACAGTTTGAGTATAGTTTAAATGAATTGTGGCTGATCTCACACATAGCTCT----CAAGAAATTGCTCTTTCACTTGATAGGCCAGCctgccatgc---ttttttt-------tttttttt----------------------------------------------------------------------------------aacagaaatttcTCTCACTTGTTTCACTTTATTATTCTTGCTAATGAGA--TTCCTGACAGTGCAATGTCAAAAGAGAGACATTACCATATTATATTACATGTTGCATTCTGAAGTATTTCGCATC-TTTTTATTTGCAAGTGTGCCATGATTATG-GGGTTCCACAAATTACC-TTGTGTTTGATCTGAAATCTCAAA-T-CCAGCAGCTCACCAAGAGAAACTGCTTAGCTTTCCCTAAAAAAGTCTGGTTAGgacaaattgctttccaaaatgtGTTAAGCAACAGTAAAGCAC-AGTACAGGTCAACACTTTCAGGGCTACTTTATATACTTGCCCCATATCTTGGTTGGTTTCtgaacaaagaattttaaaattctgattgtCATTACGTGCTGCCTTGGCTAGGCCCATCCACTGAGTTGCTCTTTGTATTAAGAAAGAAATGGTAGAGATAGGAGAAATCATTTCCTAGCTGGCTATA-GAAGACTACAAAGACAGTGGCAAAATGTACTATTGGTAGAGATGAAGGAAACTGAGGAATATGTAGAAGGTAACTGCCTGAGTTGAGATGACCTTCTACTTGGCTAACTAGGGAAAGAAGCAAactataaaggaaattaaaaaacaaaa-acaaaaacaaaaaatcagatgATC-AGGGCCTCATTAGTAGTAGCACAATATCAACCTGAATAATAATTTAGAATGTTTCTGCATTCCCTCTTGGATTATATCTAAGCTCTTTG-TCTGTTATTCCAGGCCCAACTTTCTCTGTCA----TCACCCCTAATTA--TGAAATTATGCATCTTTACTTCTaagctttt-----------------------------------------ccctctttctc----tggcTGTTATCCTGTTTCCCATA--------------------CTCTAA-GTTTTGTACCCTGACTTTATTC-TGTGCC--------ATTCATTTTATAAGCATGGCTGCTCCAATGAT--TTTAGGC--------------------------CCTTAAtgattttttgtctctttttgatTCCCCTTACCAATAAGCAGTGATCAGTTTATGCTTTTCTGTAT--AGTCATTCATTGTTTGCTTTTACTTATTTGGGTC--TTATTTTCTCAAATCATAAGCTCCCAAA-GTGGGaaatttatactt----------tatatttcttctgt-------ttcctccACATTCATAGTGGatgctaaataaatgtata-tgatcAGAATC-AATAGAGAGCAGTTAATGGTGAGTGATTTGTTAACAG--AGATAAGTTTTAAGAGAAGAATCTACTTTATGCCA-TTTTCTAATTTCGATTAGGTGTCTTCCTCTCTCCAGTAGCTTTTATGTATTTAGCAATAAGCA----ATAGATTCTCGTTATTCCCAGATTTAACATTTGCCATTTTGAAGCTGTATAACAGGAGTCATGTGAAATTATGCTGGTTTGCACA-TTTTAATTGAGTGTGCATATGTGC------------------GTTTGTTTGTGT----------GAGAGGACATGGTGTACAGGATCTAGTCATTTAGCTTGGGATCAGCACATCAGAGCATGCAGCGTCTGCATCTTCGTGTGGCTGCGTCATCCTTTACTCATAGCCCTTTTGAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110384172 2646 + 127223203 AAAACTTCCCTTCAT-TTACAGTGTGGCTTATTCAAGTATTTTTACTGAGCCCTCACAGGGTTAATGTCTTTAATGTTTGAGCAGAC-TGTTTAGAATTTTGGTTTGATGAAAAGT----AGGCCA------TGAACATTTGCTGAGTGCTCACATGTAAAGAGTTCCAAGTGACTGATTGTAATCATGAATTTAAATGAAATATGTTTAACTTCCAGGGTGAAAAGGAACAGCCTGTGTTTGCAATGACCGGCCTTCGATGGGGATCGTTCAGAGATGCTGGCGTCAAAGTTAGCAAGTAAAGGATTACTATATTGATGTGTGAT--GTTTTTTTAAAAAAATCTTATTCTGTCCCTGCCTTTCAGGTT-------ACAGAGATCTTCTGGGAATAAATTTGGTGGGCCTTGAGGTTGAATTATGTGTGAATAATGGAGGTACGAACAATCAGGTAGAGGTTTATGTCCTATATGCAGAAAGGCTGGGGAAGGTTGCAGCTTCCTCAGCACTAGCTGGGCAGTAGCTGAAGAGGAGAAGGGTATGTCTCTATTTTTAGGCACAATATTTGAGCATAGGTTAGGCTCAAGCTAGGCTGTAGGGAGAACTGGATTGCCTGTCATTCTGCAGC----TGCTTAGCTGGCTACCAAGTGGAAGGGACTGCCTGGGCTACAG-CCTTACCGAGCT------------GTTGCA------GTCGGATGACTTTTCCTGAGAGGTATGTTTG-TGAAGGC-CTCGCAGATTGGGAGACCACAGGCCGCT-GCTCTTAGAGGAGGAAGAAAGGCGGCGCCTGGCTGTGCCATGAGGTGGGAGAAACAGGCCTGTTGAGGAGCTGATGAGAGGGCCAGCACTGGCTTTTCATGGGAATTGACTTA-TTTTTGGAGAATCCATTGTGTGCAATGGA----TTGGATTGGAGAGAGGATGTGTCGTGTTCCATCTGCTGTGGAGAGGTAAAGTTAGGCAAGGGCTTGCTGA-GCAAGACTAAAGGGGACACCATGTGAGATTTGCTTCATACCT----GGTGGGTGTTATTTTCTCTTTACCTTTTCTTAAAATCGAGGGCTTACAGTTTGAGTATAGTTTAAATGAATTGTGACTGCTCTCACACATAGCTCT----CAAGAAATTGCTCTTTCACTTGATAGGCCAGCCTGCCATGCtttttttttt-------tttttttt----------------------------------------------------------------------------------AACAGAAATTTCTCTCACTTGTTTCACTTTATTATTCTTGCTAATGAGA--TTCCTGACAGTGCAATGTCAAAAGAGAGACATTACCATATTATATTACATGTTGCATTCTGAAGTATTTCACATC-TTTTTATTTGCAAGTGTGCCATGATTATG-GGGTTCCACAAATTACC-TTGTGTTTGATCTGAAATCTCAAA-T-CCAGCAGCTCACCAAGAGAAACTGCTTAGCTTTCCCTAAAAAAGTCTGGTTAGGACAAATTGCTTTCCAAAATGTGTTAAGCAACAGTAAAGCAC-AGCACAGGTCAACACTTTCAGGGCTACTTTATATACTTGCCCCATATCTTGATTGGTTTCTGAACAAAGAATTTTAAAATTCTGATTGTCATTACATGCTGCCTTGGCTAGGCCCATCCACTGAGTTGCTCTTTGTATTAAGAAAGAAATGGTAGAGATATGAGAAATCATTTCCTAGCTGGCTATA-GAAGACTACAAAGACAGTGGCAAAATGTACTATTGGTAGAGATGAAGGAAACTGAGGAATATGTAGAACGTAACTGCCTGAGTTGAGATGACCTTCTACTTGGCTAACTAGGGAAAGAAGCAAACTATAAAGGAAATTaaaa---aaaa-aaaacaacaaaaaaTCAGATGATC-AGGGCCTCATTAGTAGGAGCACAATATCAACCTGAATAATAATTTAGAATGTTTCTGCATTCCCTCTTGGATTATATCTAAGCTCTTTG-TCTGTTATTCCAGGCCCAACTTACTCTGTCA----TCACCCCTAATTA--TGAAATTATGCATCTTTACTTCTAAGCTTTT-----------------------------------------CCCTCTTTCTC----TGGCTGTTATCCTGTTTCCCATA--------------------CTCTAA-GTTTTGTACCCTGACTTTATTC-TGTGCC--------ATTCATTTTATAAGCATGGCTGCTCCAATGAT--TTTAGGC--------------------------CCTTAATTATTTTTTGTCTCTTTTTTATTCCCCTTACCAATAAGCAGTGATCAGTTTATGCTTTTCTATAT--AGTCATTCATTGTTTGCTTTTACTTATTTGGGTC--TTATTTTCTCAAATCATAAGCTCCCAAA-GTGGGAAATTTATACTT----------TATATTTCTTCTGT-------TTCCTCTACATTCATAGTGGATGCTAAATAAATGTATA-TGATCAGAATC-AATAGAGAGCAGTTAATGTTGAGTGATTTGTTAACAG--AGGTAAGTTTTAAGAGAAGAATCTACTTTATGCCA-TTTTCTAATTCTGATTAGGTGTCTTCCTCTCTCCAGTAGCTTTTATGTATTTAGCAATAAGCA----ATAGATTATCGTTATTCCCAGATTTAACATTTGCCATTTTGAAGCTGTATAACATGAGTCACGTGAAATTATGCTGGTTTGCACA-TTTTAATTGAGTGTGCATATGTGC------------------GTTTGCTTGTGT----------GAGAGGACATGGTGTACAGGATCTAGTCATTTATCTTGGGATCAGCACATCAGAGCATGCAGTGTTTGCATCTTCGTGTGGCTGCATCATCCTTTACTCATAGCCCTTTTGAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23730365 2585 - 128169293 aaaaaTTAGCTTCATATTACCGTGTGACTTATGTAAGTACTTTTACTGACCACTCACAGGGTTAATATCTTTAAAGTTGGAGCATACTTTTTTAGAATTTTGGTTTGATGAAAAGT----AGGTCA------TGAACATTTGCTGAGTACTTACATGTAAAGAATCCCCAGTGAGTGACTGTAATCATGAATTTAAACGAAATGTATTTAACCTCCAGGGTGAAAAGGAACAGCCTGTGTTTGCAATGACCGGCCTTCGATGGGGATCCTTCAGAGATGCTGGCGTCAAAGTTAGCAAGTAAAGGATTGCTATATCAATGTGCGAT--GCTTTC-TAAAACAATCTTATTCTGTCCCTGCCTTTCAGGTTTTAACTCACAGTGA---CCTGGGAATAAAATTGG-GGGTGTGGAGGTTGAACTATGTGTGAATAGTGGAGGTAGGAACA-----------------GTCCCATATGCAGAAAGGCTGGGGAAAGTTGCAGTTTCCTCGACACTAGCTGGGCGGTAGCTGAAGAGGAGAAGGGTATGTCTCTATTTTTAGACACAGTGGTGGAGCATAGGTTAGGCTCAAGCTAGGGTACAGGAAGAACTGGATTGCATGTCAGCCTGCAGC----TGCTTAGCTGGGTACCAAGTGGAAGGCACTGCCTGGGCTACAG-CCTTATGGAGCT------------GTTGCA------ATCGGATGAC-TTTCCTGAGAGGCGTTTTTG-TGAAGGC-CTCACAGATTGGCAGACCACAGGCCGCC-GCTCTTAGAGAAGGAATAAAGGCGGCGCCTGACTGTGCTGTGAGACGGGAGAAACGGGCCTGTCGAGGAGCTGATTAGAGGGCCGGCACTGGCTTTTCATGGGAATTGACTTA-TTTTTGGAGAATCCATTGTGCACAATGAAAGTCTGGTCTTGGAGAGAGGGTGTGTCATGTTCCAGTTGCTGTGGAGAGGTAAAG-TAGGCAAGGGCTTGCTGA-GGAGGACTGGAGGGGACACCGCATGAGATTCGCTTCATACCT----CGTGGGTGGCATTTTCTCTTTACCTTTTCTTAAAGTCGAGGGCTTACAGTTTGAGTATGGTTTAAATGAATTGTGACCGATCTCACATGTAGCTCT----CAAGAAACTG--CTTTCACTTCACAGGCCAGC------------TTT-----------------------------------------------------------------------------------------------------AGCAGAAATTCCTCTCACTTTGTTCACTTTATTATTCTTACTAACGAAA--TTCCTGACAGTGGAATGTC---AGAGAGATATTACCATGTTATATTATACATTGCATTCTTAAGTATTTCACATC-TTTTTATGTGCAAGTGTGCCATGATTATG-GGATTCCAC-AGTTACC-TTGGGTTTGAACTGATATCTCAGATT-CCAGCAGCTCACCAAGAGGAACTGCTTAGCTTTCCCTAAAAAAGTCTGGTTAGGACAAACTGCTTTCCACACTGTGTCAAGCAGCAATAAAACAC-AATACAGGTCAGCGCTTGGAGGACTATTTTATATACTTGCCCCATATCTCGATTGGTTTCTGAAC-AAGAATTTAAAAATTCTGATTGTTATCATGTACTACCTTGGCTAGGCCCATTCACAGCGTTGCTCTTTGTATTAAGAAAGCAAT-GTAGAGATATGAGAAGCCATTTCCTAGCTGGCTATAGGAAGACTACAAGGACAGTGGCAAATTTTACTATTGGTAGAGATGAAGGGAACTGAGGAAAATTTACAAGGTAATTGCCTGAGTTGAGATGATCTTCTACTTGGCTAACTAGGAAAAGCAGCAAATT-TAAAGTAAATTTTAA---AAAACAGTAACACAAAAAATCAGATGATCAAAGTCCTCATTAGTTGTAGCACAGTATTAGCCTAAATAATCATTTAGAAAGATTCTGCATTCCCTCTTGGATTACATCTAAACTCTTTT-TCTGATATTCCAGGCCCAACTTA-TCTGTCA----TCACCCCTAATTA--TGCAATTATGCATCTTTACTTCTAAGCTTTT-----------------------------------------CCCTCTTTCTC----TGGCTGTTATCCTATTTCCCATA--------------------CTCTAA-GTTTTGTGCCCTGACTTTATTC-TGTGCC--------CTTCATTTTATAAGCATGGCTTCTCCAAGGAT--TTTAGAC--------------------------CCTTAATGATTTTTTGTCTCTTTTTGATTCCCCTTACCAATAAGTAGTGATCAGGTTATGCTTTTCTTTGT--------------TTTTCTTTTACTTATTCAGGCC--TTATTTTCTCAAATCGTAGGCTCTCAAAGGTGGGAAGTTTATATTT----------CATATTTCTTTCAT-------TTCCTCCTCATTCATGGTAGGTGCTAAATAAAGGTATA-TGATCAGAATC-AATAGAGAGCAGTCAACGTTGAGTGATTTGTTAACAG--AGACAAGTTTTAAGAGAAGAATCTACTTTATGCCA-TTTTCTAATTCCAATTAGGTGTCTTCCTCTCTCCAGTAGCTTTTACGTATTTAGCAATATGCAATAGATAGATTCTCTTTATTCCCAGATTTAACATTTGCCATTTTAAAGCTGTACAAAATGAATAATGTGAAATCATGCTGGTTTACACA-TTTTAACTAAGTGTGTGTATGTGC------------------ATTTGTGTGTGT------------GAGGACATGGTGTACA-----------TTCAGCTTGGGATCAGCACATCAGAGCATGCGGTGTTTGCATCTTAGTGTGGCTTTATCATCCTTTACTCATTGCTCGTTTGAA
i calJac3.chr8             I 309 C 0
s mm10.chr6                 40381005 2450 + 149736546 -AAGATTGCATCGGCTTTAAAGTGTGGATCATTCAAGCATTCCTACCATGTATCCATAGGGCTAATTGCTTTAACATTTGAACTTAC-ATATAAAATGTTTGGTGTGATGAGATTTTCACATACCAGTGATTTCAACATTTTCTAGGTACTTA----TAAA--------------TTACTGTGTGCACAAATCTAAATCAATTGTATTTAACTTCCAGGGTGAAAAAGAACAACCTGTGTATGCAATGACTGGCCTCCGGTGGGGATCTTTCAGAGATGCTGGCGTCAAAGTTAGCAAGTAAAGGATTACTGTGTTTCTATGTGATGAGTCCTT----AAAAGTTTTATTCCATCCTTGCTGTTGAGGTTTTTAAATACACTGG---TCTGGGAGTAAATCTTCTAGGCCTGGAAGTTGAATTAGGTATTGATAATGCA-ATAGGAACAGCCAGGTA-AAGTTTGAATTCTATAGTCAGAAAGGATAGGGAAAGGTCCATT-------------------------------AAGAAAAGAGTACATATCTATTTGCAGACACA----TTTGCCATAGGT-----TCAAACAA--CAGAAGGGAAACTGGCATTGCTTATCACACAGCAGCAACATTCTTAGCTAAATCCC------AAGGTGTTGCCTGGACCTCAG-CCTCAGGGAGCCCGTAGAGTCCTAGTTG--------GTCAGAAGGC--TGCGTGCAAGGTA----TG-TGAGAACACTCACAGGTAGAGAGACTAAGGGCTGCTCTCTCTTACAGGAGATGG-------TTGTCAGGCTTTGCT----GACAGGAAGAACGGGCTCAG-GAAGAG-TGATTAGTGGGCCACCACTGGC-TTTCATAAGCATAGGCTTA-GTTTTAGAAA----CTTTCGTAGGTTGAAACTTCTGGCTCTGAAAGAGG--------------------TGTGGAGGGGTAGTG-TCGTT--GGGCTTCTGAG-GCAGGACTGAAGCAGACACCAGGCAAAGTTCATCTCTTTTCT----GGT-GGAGGCATCCTCT-------TTTGCCTACAGCTCAGGGTTTACAGTTTTAGTAGAGTTTATTTGTGTGATGGTTGCTCTCATGTACTGCTCTTTCATCCGGAACCTCTCTTGCAGTTCAAGGGCCAGACTGCTAAAC---TT------------------------------------------------------------------------------------------------------TCCAGAAATCTCTCCCAC--ATTTCATTCTGTTATCCCCGGTAATGAAA--TTCCTGACAGTGGAATGCCAGTAGGGGAGGACTGCTGGATCTCTTTACAGGACACAGCC----------------------ATTTGCAAATGGGCCGTGGTTGTATTGATTCCACAGATAACC-TTGTGCTTGATCGCTCATCTCAGATT-CCCACAGCTCACAGAGAGTAACTGCTTAGCTTCCTCTGAGAAAGTCTGCTCTGAACAAACTGCTTTCCCAAGTGTTCTGATCAACAGTTCAGCACTAGTGCTGGTCAGCTGTCTTAGGAATAGCTCATCTGCTTGTTCCA------------ACTCTGGTCGATGAGTTTCAAAG-TCTGTGGGTGGTGATATTATACCTTGGCTAGGACTGACCACTGAGTCACTTTTGGAGTGAAATAAGAAA-------------------CATTCCCTTGCTAGCCATAGGAAGACTGCAAGCATTGTGTCAACATTTACTACTGGAAAAAGTGCAAGGAACTGCTTAAACTTTAGAAATAGACCACCCGAGTCAGGGTG--TTTCTACTTGGCTAACTCACAAAAAGAG-AAACCAAAAAG----CTTTAA---AAAC----ACCATAAAATATCAAATATCCAAGGCCCTGGTAAATACTACCACAGTATCAACGTGAGTGATAATTTAGCGTGGCTCCACATT--------GGCTATAAAT-------------TTTTATTCTAGG---AAATTA---GGTCA----TTATCCCTAATGAACAGTTCTTCTGTGTTTTTATTTTTAAACCTTG-----------------------------------------CC--CTTTCTT----TGGCTGTT---CTGCCTCTTCTA--------------------GCCTAACGTTCTTTTTTCTGATCTT-TGA-TGTGTCTAGATTCAGTCCGTTTCCCAGTTCCTTCTGCCCCACCTGTGCTTTAGCCTTTGTACATTTCTCAGTATGGCCACACTCTAATGCTGTTGTAGTCCTTCCTGACTTTTCTTATCAAT----AGTGATCAGTTTATAGCAAAACATATGCAGTCACTTATAATTTACTATTATTTG---GAGTCTGTTATCTTCTCAACTCATAAG--CCCAAAAGTAGGAAGTTTATCCTGTGTTCTTCTATATGTTTATTCTTTCTACAACTTTCTCCATCTGTGTAACAAGAGCTAACTAAAGGCATC-CTACCTGAATC-AGTCAGGATCAGT-AAAGTAGCATGG-GTGTTGTCAG--AGATGAGTCTAAAGAGTGACAGCCACAT-----CA-CTTTCTAGTTGCAACTAGGCATCTTCCTCTTT--AGTAGTTTTCATGCACTTAGCAATATGCA----ATAGGTTTTC---ACTCTGAGACTT-GCACTTGCCATATTAAAGCTATATAACATGAATAATATAAATATATACTGGTTTATGCA----------------TGTGTGTGC------------------ATTT-TGTGTGA----------GAGGGGCCACGAGATACAGGATACAGTC--TTGATTTGATA---------------ATACACT------CTCTCTGTGTGGCTTTATTGCTCTCTCCTTGTGACTC-TTTGAT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52052812 2651 -  59632846 AAAAATTAATTTCATTTTACAATATGGTTTATTCAAGTCCTTTTTCTGACTACTCA----GTTAATTTCTGAGAT-TTTGAACATCC-TTTTTAGAA-TTTGGTTTGATGAAAAGT----AGGCCA------TGAACATTTGCTCGGTGTTCACTTGTAGAGAGTTCCAAG----TTACTGTAATCATTAATTTAAAATGAATGTATTTAACTTCCAGGGAGAAAAGGAACAGCCCGTGTTTGCAATGACTGGCCTTCGATGGGGATCCTTCAGAGATGCTGGCGTCAAAGTTAGCAAGTAAAGGATTATTGTACTGATGTGGGAT--GATTTT-TTAAAAACTC---TTCTGCTCCTGTCTTTGAGGTTTCAATATACAGTGATCATCTAGGAAGAAATCTGGTGGGCCTGGAGGTTGAATTACTTACAAATAATAAATGT------------GTAGATGGTTAGATCTGACA--CAGAAAGGTTGGAGAAGGTTCTGGTTTCCTCCTTGCTTGTTTGGTAG----TGAAGCGGTATAGACTGCATCTCTGTCTCTGGACATTGCGTCTGAGCACAGGTGAGGCTCATGCTAGGCTGAA-----------ATTGCCTGG-GTCCAGCAGC----CTGTTGGGGTGGCACT-----GATGGGGGTGCCT-----CCAGCCCTTGTGGAGCT------------TTTACAGTTCTGGTCAGAAGAC-TGTCCTGAGAGGCATTCTTGTTGCAAGC-CTAGCGGATCGAAAGACC--------CT-------------------------GAGGCTGGC-------------------------------------------------------------TTCCACGGGAATGGACTTCTTTTTTGAAGAGCTCATTGTGCCGAATGAAACTATTGTCTTGGAATTTGGGTGTGCTGTGTTC-------TGCTCCAAGGTGGTG-CAGACACAGGCTTCCTGAGGTGGGATTGGTGGAGACGCTGCGTGAGGTTCACTCCATATCA----GTTCGGTTGTGCTCTCTCTTTACCTTTTCTTAACAT--GGGACTTATAATTTTAGTATGGTTTGAATGAATTAT---CAATCTCACCACTTTTTAT----CAAGAAAAACCTCTTCCCCCTCCTGGGCTTCCCTACCATGC---TTCCTTTATAGAAATTTCTCTTgcacttgatgggataagcactgggtgttattctatatgttggcatattgaacaccaataaaagataaatttatataaaaaaaaaaagaaATTTCTCTTACTTGTATTACTTTGTTATTCCTGCCGGTGGAGTTTTCTGGAGAGTGAAATGTCAA-AGAGAAATGTTGCTGTATTGTATTA-------CATTGTTGAGCATTTCACATTGTTGTTATTTGTAAATTGGCCATGATTACCTTGATTCCACTAATCACTAATCTGTTTTATCTGTGATCTCCGA-TACCAGCACCTCACCAAGAGGAATTGCTTAGTTTGCCCTGAAAAAGTCTGGTGCAAACAAATTGTTTTCTGAAATGTGTTAATCAACAGTGAGCATT-AGCATAAATCAGCCCCTTT-GTACTATCTCACACACCTGCTCC-TGTTTTGATTGATTTTTGAACAATGAATTTAAAAATTTTGGTGGTGGTTATGCAACACCTCGGCTGGGACCCTCCACCGAGTCACCCTCTGTACCTTGGGAGAAACAATAGGCATGCACGGAATGAT---CTGGCTGGCCTTC---GGGCTACAAGCATAGTTTCAAGCTGTGCTGTTGGTAGACATGAGTGGAACTATGGCCAGT-TAGGAATAAACGGCCT--------------TTCTCTCTGGCTAGCTGGGAAATGAAGCAAATTATTACATAAGCTTAGA---AAAA------------AAATCAGATGATCAAGGTCCTCATTAGTAGCATCACAGTATGGACCT-AGTAATAA-TGAGGATGGCTCCACATTGCTCACTGAATTCTATCTAACCTCTGTGTTCTGGCATTTAAGGCCCAACTTTATCTGTCATCCGTCAACCCTAATTC--CATAGTTCTGTGTCTTTACTTTCAAGTCTTTGCTGTGACTGCTGTTCTGAGTGTTTCTTGTACCTTTGCTACTCCTCTTGCCTAGAATGACTTCTTTTCCGTCTTTCACATGTCTAAATCAAAACCATCTTTCTAA-ATTCCACACCCTTACTTTGCCCTTGTGCC--------ATTCATTATGCAGGCATGGCTGCTGCCATGAT--TTCCAGC--------------------------CCTTAGTGATTTCTTGTCCCTCCTCGACTCTCCTTACCAACAAATAGTGATCGGTTTACACCAATACATAT--GGTCGTGTATTGTTTTCTATTACTTTTTTTGGCT--TTATTTTCTCAAATTAGAAGCCTTCAAAGGCAGGAACTTTATACTC--------------TTTCTTCTCT-------TTCCTTCATATACATAGTAAGTGCTAAATAAATGCATATTGATCAGAATCAAATAGAGAACACTTAA-----GATGGCCTGGTAAGGGACAGATAAATTTTGATAGAGGAATCTATTTTATGCCACTTTTCTAATTCCTAGTAGGCATCGTTCTCTCTCTGCTAGCTTTTAGGTATTAAGCAATATGCA----GCAGACTCTCTTCATTCCCAGATTGAACATTT-CCATTTTAAAGCTGCATAAAATGTGTAATGTGAAGTTACGCTGATTTACAAA-TTTTAATTATTTGTATGTGTGAGAGAGAACATAATATATAAGGTATGTGTGTGTCAGAGAAAGAGAGAGAACAC-ATATATAGGGTCTGgtcacttagcatgtgagtcacacaccagatcacctggcatctgcatctcattgtggcttcatcatcttctactcattgCTCTTTTGAA
i canFam3.chr16            C 0 C 0

a score=40330.000000
s hg38.chr7_GL383534v2_alt      2940 13 +    119183 CGTACACTTGACC
s panTro4.chr7             143103185 13 + 161824586 CGTACACTTGACC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138907217 13 + 157549271 CGTACATTTGACC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93044061 13 + 110113093 CGTACACTTGACC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180942994 13 + 198365852 TGTACATTTGACC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174688929 13 + 192294377 TGTACACTTGACC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163354381 13 + 180432695 TGTACACTTGACC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110386818 13 + 127223203 TGTACACTTGACC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23732950 13 - 128169293 GGTACAGTTAGCC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40383455 13 + 149736546 TGTATACTCACCC
i mm10.chr6                C 0 C 0
e canFam3.chr16             52055463  0 -  59632846 C

a score=396227.000000
s hg38.chr7_GL383534v2_alt      2953 135 +    119183 CATTgtatccatagatgtaaacaaatgcagatagagaatatttggggaaaaaaatattccacaaaattccaaaaagcaaaactggaattggctgcacaccgagtactgtgttgaatccgtgcaaataaagtgatg
s panTro4.chr7             143103198 135 + 161824586 CATTgtatccatagatgtaaacaaatgcagacacagaatatttggggaaaaaaatattccacaaaattccaaaaagcaaaactggaattggctgcacactgagtactgtgttgaatccgtgcaaataaagtgatg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138907230 135 + 157549271 CATTgtatccatagatgtaaacaaatgcagataaggaatatttggggaaaaaaatattccacaaaattccaaaaagcaaaactggaattggctgcacaccaagtactgtgttgaatccatgcaaataaagtgatg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93044074 134 + 110113093 CATTGTATGCAGAgatataaacaaatgcagatagagaatatttgggggaaaaaa-attccacaaaattccaaaaagcaaaactggaattggctgcacaccgagtactgtgttgaatccgtgcaaataaagtgatg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180943007 135 + 198365852 CGTTgtatccatagatgtaaacaaatgcagagagaaaatatttagggaaaaaaaaattccacaaaattccaaaaagcaaaactggaattggctgcacaccgagtactgtgttgaatccgtgcaaatgaagtgatg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174688942 135 + 192294377 CGTTgtatccatagatgtaaacaaatgcagagagaaaatatttagggaaaaaaaaattccacaaaattccaaaaagcaaaactggaattggctgcacaccgagtactgtgttgaatccgtgcaaatgaagtgatg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163354394 135 + 180432695 CGTTGTATCCATAGATGTAAACAAAtgcagagagaaaatatttagggaaaaaaaaattccacaaaattccaaaaagcaaaactggAATTGGCTGCACACCGAGTACTGTGTTGAATCCGTGCAAATGAAGTGATG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110386831 135 + 127223203 CGTTgtatccatagatgtaaacaaatgcagagagaaaatatttagggaaaaaaaaattccacaaaattccaaaaagcaaaactggaattggcagcacaccgagtactgtgttgaatccgtgcaaatgaagtgatg
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23732963 131 - 128169293 CGTTgtatccatagatgcaaacaaatgcagctagcaaatattttgggaaaaaa--attccacagagttacaaaaagcaaaacttgaatttgctgcacgccgagtactgtgttgaatccatgaaaat--agtgacg
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40383468   0 + 149736546 C
e canFam3.chr16             52055463   0 -  59632846 C

a score=32970.000000
s hg38.chr7_GL383534v2_alt      3088 10 +    119183 tgtaggcact
s panTro4.chr7             143103333 10 + 161824586 tgtaggcact
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138907365 10 + 157549271 tgtaggcact
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93044208 10 + 110113093 tgtaggcatt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180943142 10 + 198365852 tgtaggcatc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174689077 10 + 192294377 tgtaggcatc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163354529 10 + 180432695 TGTAGGCATC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110386966 10 + 127223203 tgtaggcatc
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23733094 10 - 128169293 tgtaggcatt
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52055463 10 -  59632846 TGTAGTCTCT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40383468  0 + 149736546 C

a score=424860.000000
s hg38.chr7_GL383534v2_alt      3098 137 +    119183 gtattaagtgttataagcaatgtagagatgatttaaaatatacaagagaatgtacataggttacgtgcaaatatgccattttatatccgggacttgaacatctgcagactttggACTGAGGGACAACTCTATACCAA
s panTro4.chr7             143103343 137 + 161824586 gtattaagtgttataagcaaggtagagatgatttaaaatatgcaagagaatgtacataggttacgtgcaaatatgccattttatatcagggacttgaacatctgcagactttggACTGAGGGACAACTCTATACCAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138907375 137 + 157549271 gtattaagtgttataagcaatgtagagatgacttaaaatatacaagagaatgtacataggttatgtgcaaatatgccattttatatcagggacttgaacatcttcagactttggACTGAGGGACAACTCTATACCGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93044218 137 + 110113093 ctgttaagtgttataagcaatgtagagatgatttaaaatatacaagagaatgtacataggttatgtgcaaatatgccattttatatcagggacttgaacatctgcagactttggACTGAGGGACAACTCTATACCGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180943152 137 + 198365852 gtattaagtgttataagcaatgtagagttgatttaaaatatacaagagaatgtacatagattatgtggaaatatgccattttctatcagggacttgaacgtctgcagactttggACTGAGGGACAACTGTATACCGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174689087 137 + 192294377 gtattaagtgttataagcaatgtagagttgatttaaaatatacaagagaatgtacatagattatgtggaaatatgccattttctatcagggacttgaacatctgcagactttggACTGAGGGACAACTGTATACCGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163354539 137 + 180432695 GTATTAAGTGTTATAAGCAATGTAGagttgatttaaaatatacaagagAATGTACATAGATTATGTGGAAATATGCCATTTTCTATCAGGGACTTGAACATCTGCAGACTTTggactgagggacaactgtatacCGA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110386976 137 + 127223203 gtattaagtgttataagcaatgtagagttgatttaaaatatacaagagaatgtacatagattatgtgcaaatatgccattttctatcagggacttgaacatctgcagactttggACTGAGGGACAACTGTATACCGA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23733104 137 - 128169293 gtattaagtggtataagcaatgtagagatgatttaaaatatacaagagaatgtacacaggttatgtgcaaatgtgccattttatatcagggacttgaacatctgcagactttggACTGAGGGACAACTCTATACGGA
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40383468   0 + 149736546 C
e canFam3.chr16             52055473   0 -  59632846 C

a score=14913.000000
s hg38.chr7_GL383534v2_alt      3235 4 +    119183 ACTG
s panTro4.chr7             143103480 4 + 161824586 ACTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138907512 4 + 157549271 ACTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93044355 4 + 110113093 ACTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180943289 4 + 198365852 ACTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174689224 4 + 192294377 ACTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163354676 4 + 180432695 ACTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110387113 4 + 127223203 ACTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23733241 4 - 128169293 ACCG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52055473 4 -  59632846 ACTA
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40383468 0 + 149736546 C

a score=4254657.000000
s hg38.chr7_GL383534v2_alt      3239 1141 +    119183 TATTCTATGGCTTAAAGGATGTGTTTAAAGGATGTTGTGAATTTAGTGACTCAAGGAGCCT-GGTTATATATCTCTCATAAATTGCAAGAATCTTT--ACTGCG----TAACTAATTACATATAACTTGACAAGGCATCAAAACGTGGATTTAAAATTGAATGTAATACTCTTTTATACTAAGCCATAACCTCCTAGCTACCAGA---------------------ATAGC--------------------------------CACTCATAGCAGAGATGTAATTCTAATGTA---TTGTCTGCCATGAATGGTATCTATCACAT-GA-TAGTTCTTTTGATATTCTTATCAGATTTTTATCTTGGTCTTTTCACAGGTACTGGTATCTTGGGCCTCTAAAAATCAAAGCAGCCCACTTTTTCAGCACTCTTAAGGTAAATGTGATTTACAGTGTAGAA-ATTTG--CTGTGTTATTTTGTTGTTTCTCTGTAATGCATATATTTGGTA-TTTTTTTTTAATTCCTTGCTACAGATGAATGTGGCATGCTTCAACACTAAAACAGGGCATGTTTGATTAAATACAAATATAGAACGCATTCCTGTTTTGATAAGCAATCACCCTTT--------------ATCTACCAAT-----------------------------------------------------------TCATTCCCTCTACTACCAAACCCATATTTAATCTCTCTTAAGCATTCTACTTGCCTTTGC-TATTAATTCACT--CTC--TTGCCCGACAGACCTTGAACATAATGACATATTCTTCAGCGATTATTT--TATGCTTGTCTATGTTAGTACCTGGAAATGAATTGAAGATTTGTATCTGAATATATAATATCTAATTGTACAGGTTTGTGTTTG-TATCAGTAGGTTTCAAACTGTACCagctaaatatgggcggtggttactgtattggagagtatagatatggaacatttccatgatcagaaaaagttttgttgggcactgctACTCTATATGAT---------------------------------------------ACAATAAAAAA-------------------------------------TACT----------------GGCATAG-AGAAAAGCCTAACAATTTT-TATTAGTGAAAATGCTAATAGAAAAGTCATCTTTAACTGTGGACTACAGACTATATTCAGCTTTTATGCAAATCAAAGTGGTATATTGATAGTTTG-----GCCAATCTGAAAATTGGCAGATGGGGTTTGAATGTAGTGAGAAGGTTGGTTCCAATGTTAATATTCAGAGTTATTGAATGtttttctaattataaaagtaatacatgt
s panTro4.chr7             143103484 1145 + 161824586 TATTCTATGGCTTAAAGGATGTGTTTAAAGGATGTTGTGAATTTAGTGACTCAAGGAGCCT-GGTTATATATCTCTCATAAATTGCAAGAATCTTT--ACTGCA----TAACTAATTACATATAACTTGACAAGGCATCAAAATGTGGATTTAAAATTGAATGTAATACTCTTTTATACTAAGCCATAACCTCCTAGCTACCAGA---------------------ATAGC--------------------------------CACTCATAGCAGAGATGTAATTCTAATGTA---TTGTCTGCCGTGAATGGTATCTATCACAT-GA-TAGTTCTTTTGATATTCTTATCAGATTTTTATCTTGGTCTTTTCACAGGTACTGGTATCTTGGGCCTCTAAAAATCAAAGCAGCCCACTTTTTCAGCACTCTTAAGGTAAATGTGATTTACAGTGTAGAA-ATTTG--CTGTGTTATTTTGTTGTTTCTCTGTAATGCATATATTTGGTA-TTTTTTTTTAATTACTTACTACAGATGAATGTGGCATGCTTCAACACTAAAACAGGGCATGTTTGATTAAATACAAATATAGAACGCATTCCTGTTTTGATAAGCAATCACCCTTC--------------ATCTACCAAT-----------------------------------------------------------TCATTCCCTCTACTACCAAACCCATATTTAATCTCTCTTAAGCATTCTACTTGCCTTTGC-TATTAATTCACT--CTC--TTGCCCGACAGACCTTGAGCATAATGACATACTTCTCACCAATTATTT--TATGCTTGTCTATGTTAGTACCTGGAAATGAATTGAAGATTTGTATCTGAATATATAATATCTAATTGTACAGGTTTGTGTTTA-TATCAGTAGGTTTCAAACTATACtagctaaatatgggtggtggttactgtactggagagtatagatagggaacatttccatgatcagaaaaagttttattgggcagtgctACTCTATATGAT---------------------------------------------ACAATAAAAAA-------------------------------------TACT----------------GGCATAG-AGAAAAGCCTAACAATTTT-TATTAGTGAAAATGCTAATAGAAAAGTCATCTTTAACTGTGGACTACAGACTATATTCAGCTTTTATGCAAATCAAAGTGGTATATTGATAGTTTG-TCTGGCCAATCTGAAAATTGGCAGATGGGGTTTGAATGTAGTGAGAAGGTTGGTTCCACTGTTAATATTCGGAGTTATTGAGTGtttttctaattataaaagtaatacatgt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138907516 1146 + 157549271 TATTCTATGGCTTAAAGGATGTGTTTAAAGGATGTTGTGAATTTAGTGACTCAAGGAGCTT-GGTTATATATCTCTCATAAATTGCAAGAATC-TT--ACTGCA----TAACTAATTACATATAACTTGACAAGGCATCGAAATGTGGATTTAAAACTGAATGTAATACTCTTTTATACTAAGCCATAACCTCTTAGCTACCAGA---------------------ATAGC--------------------------------CACTCATAGCAGAGATGTAATTCTAATGTA---TTGTCTGCCATGAATGGTATCTATCACAT-GA-TAGTTCTTTTGATATTCTTATCAGATTTTTATCTTGCTCTTTTCACAGGTACTGGTATCTTGGGCCTCTAAAAATCAAAGCAGCCCACTTTTTCAGCACTCTTAAGGTAAATGTGATTTACAGTGTAGAA-ATTTG--CTGTGTTATTTTGTTGTTTCTCTGTAATGCATATATTTGGTATTTTTTTTTTAATTCCTTGCTACAGATGAATGTGGCATGCTTCAACACTAAAACAGGGCATGTTTGATTAAATACAAATACAGAATGCATTCCTGTTTTGATAAGCAATCACCCTTC--------------ATCTACCAAT-----------------------------------------------------------TCATTCCCTCTACTACCAAACCCACATTTAATCTCTCTTAAGCATTCTACTTCCCTTTGC-TATTAATTCACT--CTT--TTGCCCGACAGACCTTGAACATAATGACATATTTCTCACCGATTATTTG-TATGCTTGTCTATGTTAGTACCTGGAAATGAATTGAAGATTTGTATCTGAATATATAATATCTAATTGTACAGGTTTGTGTTTA-TACCAGTAGGTTTCAAACTATACtaactaaatatgggcagtggttactgtattgtagagtatagatatggaacatttccatgatcagaaaaagttttgttgggcagtgctACTCTATACGAT---------------------------------------------ACAATAAAAAA-------------------------------------TACT----------------GGCATAG-AGAAAAACCTAACAACTTT-TATTAGTGAAAATGCTAATAGAAAAGTCATCTTTAACTGTGGACTACAGACTATATTCAGCTTTTATGCAAATCAAAGTGGTATATTGATAGTTTG-GCTGGCCAATCTGAAAACTGGCAGATGGGGTTTGAATGTAGTGAGAAGGTTGGTTCCAATGTTGATATTCAGAGTTATTGAGTGtttttctaattataaaagtaatacatgt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93044359 1146 + 110113093 TATTCTATGGCTTAAGGGATGTGTTTAAAGGATGTTGTGAATTTAGTGACTCAAGGAGCCT-GGTTATATATCTCTCATAAATTGCAAGAATCTTT--ACTGCA----TAACTAATTACATATAGCTTGACAAGGCATCGAAATGTGGATTTAAAATTGAATGTAATACTCTTTTATACTAAGCCATAACCTCCTAGCTACCAGA---------------------ATAGC--------------------------------CACTCATAGCAGAGATGTAATTCTAATGTA---TTGTCTGCTGTGAATGGTATCTATCATAT-GA-TAGTTCTTTTGATATTCTTATCAGATTTTTATCTTGGTCTTTTCACAGGTACTGGTATCTTGGGCCTCTAAAAATCAAAGCAGCCCACTTTTTCAGCACTCTTAAGGTAAATGTGATTTACAGTGTAGAA-ATTTG--CTGTGTTATTTTGTTGTTTCTCTGTAATGCATATATTTGGTA-TTTTTTTTTAATTCCTTGCTACAGATGAATGTGGCATGCTTCAACACTAAAACAGGGCATGTTTGATTAAATACAATTACAAAATGCATTCCTGTTTTGATAAGCAATCACCCTTC--------------ATCTACCAAT-----------------------------------------------------------TCATTCCCTCTACTACCAAACCCATATTTAATCTCTCTTAAGCATTCTACTTCCCTTTGC-TATTAATTCACT--CTC--TTGCCCGACAGACCTTGAACATAATGACATATATCTCACTGATTATTTG-TATGCTTGTCTATGTTAGTACCTGGAAATGAATTGAAGATTTGTATCTGAATATATAATATCTAATTGTACAGGTTTGTGTTTA-TATCAGTAGGTTTCAAACTATACtagctaaatatgggtggtggttactgtattggagagtatagatatggaacatttccatgatcagaaaaagttttgttgggcagtgctACTCTGTACGAT---------------------------------------------ACAATAAAAAA-------------------------------------TACT----------------GGCATAG-AGAAAAGCCTAACAACTTT-TATTAGTGAAAATGCTAATAGAAAAGTCATCTTTAACTGTGGACTACAGACTACATTCAGCTTTTATGCAAATCAAAGTGGTATATTGATAGCTTG-GCTGGCCAGTCTGAAAATTGGCAGATGGGGTTTGGATGTAGTGAGAAGGTTGGTTCCAATGTTAATATTCAGAGGTACTGAGTGtttttctaattataaaagtaatacatgt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180943293 1150 + 198365852 TATTCTATGGCTTAAAGGATGTGTTTAAAGGATGTTGTGAATTTAGTGACTCAGGGAGCCT-GGTTATATATCTCTCATAAATTGCAAGGATCTTT--ACTGTATAACTAACTAATTACATATAACTTGACAAGGCATCGAAATGTGGATTTAAAATTGGATGTAATACTCTTTTATACTAAGCCATAACCTCCTAGCTACCAGA---------------------ATAGC--------------------------------CACTCATAGCAGAGATGTAATTCTAATGTA---TTGTCTGCCATGAATGGTATCTATCACAT-GA-TAGTTCTTTTGATATTCTTATCAGATTTTTATCTTGGTCTTTTCACAGGTACTGGTATCTTGGGCCTCTAAAAATCAAAGCAGCCCACTTTTTCAGCACTCTTAAGGTAAATGTGATTTACAATGTAGAT-ATTTG--CTGTGTTATTTTGTTGTTTCTCTGTAATGCAAATATTTGGTA-TATTTTTTTAATTCCTTGCTACAGATGAATGTGGCATGCTTCAACACTAAAACAGGGCATGTTTGATTAAGTATAAATACAAAAAGCATTCCTGTTTTGATAAGCAGTCACCCCTC--------------ATCTACCAAC-----------------------------------------------------------TCATTCCCTGTACTTCCAAACCCATATTTAATCTCTCGTTAGCATTCTAATTCCCTTTGC-TATTAATTCACT--CTC--TTGCCAGACAGACCTTGAACATAATGCCCTATGTCCCACCGATTATTTG-TATGCTTGTCTATGTTAGTACCTGGAAATGAATTGAAGATTTGCATCTGAATATGTAATATCTAATTGTACAGGTTTGTGTTTA-TATCAGTAGGTTTCAAACTATACtagctaagtatgggtggtggtgactgtattggagagtataggtatggaacatttccattaccagaaaaagttttgttgggcagtgctACTCTATATGAT---------------------------------------------ACAATAGAAAA-------------------------------------TACT----------------GGCATAG-AGAAAAGCCTAACAACTTT-TATTAGTGAAAATGCTAATAGAAAAGTCATCTTTACCTGTGGACTACAGACTATATTCAGCTTTTATGCAAATCAAAATGGTATATTCACAGTTTG-GCTGGCCAGTCTGAAAATTGGCAGATGGGGTTGGAATGTAGTGAGAAGTTTGGTTCTAATGTTAATATTCAGAGTTATTGAGTGTTTTTCTAATTATAAAAGTAATACATGT
i rheMac3.chr3             C 0 I 65
s macFas5.chr3             174689228 1150 + 192294377 TATTCTATGGCTTAAAGGATGTGTTTAAAGGATGTTGTGAATTTAGTGACTCAGGGAGCCT-GGTTATATATCTCTCATAAATTGCAAGGATCTTT--ACTGTATAACTAACTAATTACATATAACTTGACAAGGCATCGAAATGTGGATTTAAAATTGGATGTAATACTCTTTTATACTAAGCCATAACCTCCTAGCTACCAGA---------------------ATAGC--------------------------------CACTCATAGCAGAGATGTAATTCTAATGTA---TTGTCTGCCATGAATGGTATCTATCACAT-GA-TAGTTCTTTTGATATTCTTATCAGATTTTTATCTTGGTCTTTTCACAGGTACTGGTATCTTGGGCCTCTAAAAATCAAAGCAGCCCACTTTTTCAGCACTCTTAAGGTAAATGTGATTTACAATGTAGAT-ATTTG--CTGTGTTATTTTGTTGTTTCTCTGTAATGCAAATATTTGGTA-TATTTTTTTAATTCCTTGCTACAGATGAATGTGGCATGCTTCAACACTAAAACAGGGCATGTTTGATTAAGTATAAATACAAAAAGCATTCCTGTTTTGATAAGCAGTCACCCCTC--------------ATCTACCAAC-----------------------------------------------------------TCATTCCCTCTACTTCCAAACCCATATTTAATCTCTCGTTAGCATTCTAATTCCCTTTGC-TATTAATTCACT--CTC--TTGCCAGACAGACCTTGAACATAATGCCCTATGTCCCACCGATTATTTG-TATGCTTGTCTATGTTAGTACCTGGAAATGAATTGAAGATTTGCATCTGAATATGTAATATCTAATTGTACAGGTTTGTGTTTA-TATCAGTAGGTTTCAAACTATACtagctaagtatgggtggtggtgactgtattggagagtataggtatggaacatttccattatcagaaaaagttttgttgggcagtgctACTCTATATGAT---------------------------------------------ACAATAGAAAA-------------------------------------TACT----------------GGCATAG-AGAAAAGCCTAACAACTTT-TATTAGTGAAAATGCTAATAGAAAAGTCATCTTTACCTGTGGACTACAGACTATATTCAGCTTTTATGCAAATCAAAATGGTATATTCACAGTTTG-GCTGGCCAGTCTGAAAATTGGCAGATGGGGTTGGAATGTAGTGAGAAGTTTGGTTCTAATGTTAATATTCAGAGTTATTGAGTGTTTTTCTAATTATAAAAGTAATACATGT
i macFas5.chr3             C 0 I 17
s papAnu2.chr3             163354680 1150 + 180432695 TATTCTATGGCTTAAAGGATGTGTTTAAAGGATGTTGTGAATTTAGTGACTCAGGGAGCCT-GGTTATATATCTCTCATAAATTGCAAGGATCTTT--ACTGTATAACTAACTAATTACATATAACTTGACAAGGCATCGAAATGTGGATTTAAAATTGGATGTAATACTCTTTTATACTAAGCCATAACCTCCTAGCTACCAGA---------------------ATAGC--------------------------------CACTCATAGCAGAGATGTAATTCTAATTTA---TTGTCTGCCATGAATGGTATCTATCACAT-GA-TAGTTCTTTTGATATTCTTATCAGATTTTTATCTTGGTCTTTTCACAGGTACTGGTATCTTGGGCCTCTAAAAATCAAAGCAGCCCATTTTTTCAGCACTCTTAAGGTAAATGTGATTTACAATGTAGAT-ATTTG--ctgtgttattttgttgtttctctgtaatgcaaatatttggta-tatttttttaattccttgcTACAGATGAATGTGGCATGCTTCAACACTAAAACAGGGCATGTTTGATTAAGTATAAATACAAAAAGCATTCCTGTTTTGATAAGCAGTCACCCCTC--------------ATCTACCAAC-----------------------------------------------------------TCATTCCCTCTACTTCCAAACCCATATTTAATCTCTCATTAGCATTCTAATTCCCTTTGC-TATTAATTCACT--CTC--TTGCCAGACAGACCTTGAACATAGTGCCCTATGTCCCACCGATTATTTG-TATGCTTGTCTATGTTAGTACCTGGAAATGAATTGAAGATTTGCATCTGAATATGTAATATCTAATTGTACAGGTTTGTGTTTA-TATCAGTAGGTTTCAAACTATACTAGCTAAGTATGGGTGGTGGTGACTGTATTGGAGAGTATAGGTATGGAACATTTCCATTATCAGAAAAAGTTTTGTTGGGCAGTGCTACTCTAtatgat---------------------------------------------gcaatagaaaa-------------------------------------tacT----------------GGCATAG-AGAAAAGCCTAACAACTTT-TATTAGTGAAAATGCTAATAGAAAAGTCATCTTTACCTGTGGACTACAGACTATATTCAGCTTTTATGCAAATCAAAATGGTATATTCACAGTTTG-GCTGGCCAGTCTGAAAATTGGCAGATGGGGTTGGAAAGTAGTGAGAAGTTTGGTTCTAATGTTAATATTCAGAGTTATTGagtgtttttctaattataaaagtaatacatgt
i papAnu2.chr3             C 0 I 17
s chlSab2.chr21            110387117 1140 + 127223203 TATTCTATGGCTTAAAGGATGTGTTTAAAGGATGTTGTGAATTTAGTGACTCAGGGAGCCT-GGTTATATATCTCTCATAAATTGCAAGAATCTTT--ACTGTATAACTAACTAATTATGTATAACTTGACAAGGCATCGAAATGGGGATTTAA----------AATACTCTTTTATACTAAGCCATAACCTCCTAGCTACCAGA---------------------ATAGC--------------------------------CACTCATAGCAGAGATGTAATTCTAATGTA---TTGTCTGCCATGAATGGTATCTATCACAT-GA-TAGTTCTTTTGATATTCTTATCAGATTTTTATCTTGGTCTTTTCACAGGTACTGGTATCTTGGGCCTCTAAAAATCAAAGCAGCCCACTTTTTCAGCACTCTTAAGGTAAATGTGATTTACAATGTAGAT-ACTTG--CTGTGTTATTTTGTTGTTTCTCTGTAATGCATATATTTGGTA-TATTTTTTTAATTCCTTGCTACAGATGAATGTGGCATGCTTCAACACTAAAACAGGGCATGTTTGATTAAGTATAAATGCAAAAAGCATTCCTGTTTTGATAAGCAGTCACCTGTC--------------ATCTACCAAC-----------------------------------------------------------TCATTCCCTCTACTTCCAAACCCATATTTAATCTCTCGTTAGCATTCTAATTCCCTTTGC-TATTATTTCACT--CTC--TTGCCAGACAGACCTTGAACATAATGCCCTATGTCCCACCGATTATTTG-TATGCTTGTCTATGTTAGTACCTGGAAATGAATTGAAGATTTGCATCTGAATATGTAATATCTAATTGTACAGGTTTGTGTTTA-TATCAGTAGGTTTCAAACTATACtagctaagtatgggtggtggtgactgtattggagagcataggtatggaacatttccattatcagaaaaagttttgttgggcagtgctACTCTATATGAT---------------------------------------------ACAATAGAAAA-------------------------------------TACT----------------GGCATAG-AGAAAAGCCTAACAACTTT-TATTAGTGAAAATGCTAATAGAAAAGTCATCTTTAACTGTGGACTACAGACTATATTCAGCTTTTATGCAAATCAAAATGGTATAGTCACAGTTTG-GCTGGCCAGTCTGAAAACTGGCAGATGGGGTTGGAATGTAGTGAGAAGTTTGGTTCTAATGTTAATATTCAGAGTTATTGAGTGTTTTTCTAATTATAAAAGTAATACATGT
i chlSab2.chr21            C 0 I 15
s calJac3.chr8              23733245 1125 - 128169293 TATTTTATG-------------GTTTAAAGAATGTTGTGAATTTAGTGACTCAAGGAGCCT-GGTTCTATATCTCTCATAAATTGCAGGAATCTTT--ACTGTA----TAACTAATTACCTATAGCTTGACAAGGCATCAAAATGTGGATTTAAAATTGAATGTAATACTCTTTTATACTAAGCCATAATCTCCTAGCTACCAGA---------------------ATAGC--------------------------------CACTCATAGCAGAGATGGAATTCTAATGTA---TTGTCTGCCATGAATGG--TCTGTCACAT-GA-TGGTTCTTTTAACATTCTTATCTGATTTTTACCTCTGTCTTTTCACAGGTACTGGTATCTTGGTCCTCTAAAAACCAAAGCAGCCCACTTTTTCAGCACTCTTAAGGTAAATGTGATTTACGGTGTAGAA-ATGTG--CCGTGTTATTTTGTTGTTTCTCTGTGATAAGTGTATTTGGTA-TA-TTTTTTATTTTTTTGCTAGAGATGAATGTGACATGCTTCAACACTAAAACGGGGCATGTTTGATTAAATAAAAATACAGAAAGCGTTCCTGTTTTGATAAGGAATCACCTGTC--------------ATCTACCAAC-----------------------------------------------------------TCATTTCCTCCACTAGCAAACCCATATTTAATTTTTCTTTAGCATTCTAATTCCCTTTGC-CATTAATTCACT--CTC--TTGCCAGACAAACTTT-AACCTAATGACATATGTCTCACCAATTATTTGTTATGATTATCTATATTAGTACCTGGAAATGAATGGAAGATTTGTATCTGAATATATAATATCTAATTGTACAGGTTTGTGTTTA-TATCAGTAGGTTTCAAACTATACTAGCTAAATATGGGTGGCGGTTACCGCATTGAAGAGTATAGATATGAAACATGTTCATTATCAAAAAAAATTCTGTTGGGCATTGCTACTC--TACTAT---------------------------------------------ACAATTAAAAA-------------------------------------TACT----------------GGCATAG-AGACTAGCCTAACGACGTT-TATTAGTGAAAATGC-AATAGAAAAGTCATCTTTAACTGTGGACTACAGACTATGTTCAGCTTTTATGCAAATCAAAGTGGTATATT--CAGTTTG-GCCGGCCAATCTGAAAATTGGCAGATGGGGTCTGAATATAGTGAGAAGTTTGGTTCCAATGTTAATATTCAGAGTTATTGAGTAtttttctaattataaaagtaatatatgt
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40383468 1264 + 149736546 TATTCTGTGGGTAAAAGTCTATATTATAACGAC-TTATAAACTTAGGGGTCAAAGAGACGTAAGCTCTATATCTCTTATTAACTACAGGAATTGTT---CTGC-----CATCTAAGTGTATATTCTTAGATGTGCCATTAACATTTAGGCTCAA-----AGTGTATTA--CTTTTGTGTTATGCCACAATCCTTAAGCCCCCAGA---------------------GCAGC--------------------------------CGATTACAGGAGAGGTCCATTCCTGATGAT---TTGATTGTCTTGGATGCTATCTAGCACTT-GAGCAGCTCTTTTC-------------ATTTTTATTCTTGGTTTTTCTTAGGTACTGGTATCTTGGTCCACTAAAAACCAAAGCAGCCCACTTTTTCAGCACTCTTCAGGTAAATGCAATTTATAATATAGAACACGAC--CTTTGTTAATTTGATGTTTCTCTGTCATGTCTATATTTGAGA-TA-----TTAATTCTTTACTACAGACCCATATCACGTTTTCCAATACTAAAATGGGCGACATTTGACTTA-TATAATTACAGAAAACATTCTTGTTTTGATAGACAAGTACCCCTCGtatctatctgtttatctatcaattaccccgatgtctgtttctttctctctacttatccatccatctatccatccataattcatcattctgtctatGGCCAAACCTGTGTTTGCTTTATCTTGAA-----TACTTGCCTTTGT-TTTTCATTCACC--CACCTTTACCAGATAAACCTTGAACAGAGTGAGCAAATGCCTAC--ATTATTAA-TATGTGTATCTATAGAAGTACCTGGCAGTGAGCTGAAGATTTGTAATGAATTATAGATAAATTAATTATATAGGCTTGTATATATTATCAGTAGGTTTCAAACTGTTTTGGTTAAATAAGTGTAGTACTTATTATATTCGCCAGTACTG-TATAGAACACTTCCCTCGTC--ACAACGCTCTGCCAGGCTGTGCT-CTCTTTATAATAATACGTTAAAAGGTAAGTAATAAGGCCTgaggttgtagtatagcacagtgataaagcaccttgctcagcatatttaaagccctgggtttgatTACTAATGAGAGAGTAAGGAGGCATAGAAAAAAAGTTCAACAATTTCATATTAATGAAAAACCTAAAAGAAAAATCA-CTCAATAGGTGAGCTATATACTCTGTTTATCTTTCATGCAGATCAAAGCAGTATAGTTATAATTTATGTTGGCTAATCTGAAAATTG-----------------ATTGTGAAAAACTAGAATCCAATGTTAACATTTGGAGTTATCTGAT-TTCTTCTAATTATAAAA-TAATATAT--
i mm10.chr6                C 0 C 0
s canFam3.chr16             52055477 1187 -  59632846 CATCCTGTGGTTGAAAGTGTGTATTACAGTGCC--TGTAAATTGAGAGA--GAGAGAGGCT-GATTATGTATTTCTTATAAATTGCAAGGATCTATCCACTGTG----TACCTAATTGCACATTATTCGACACAACATTGAAATGCATATTCAAAATTTAAC--TGCACTTTTTTCTGCTAAAGTATAATCCCCAGGCCTCCAGAGCTGTGAGTAGAGTGTAATTCATAGTACACATCTCACGCTAAAGGTGATTGTGAAGAGTACCCACAGTCGAGGTGTGGTTCGAACGTACTGTTGTCCTACATGAACCGTGTCTATCACGTGGA-TAGTTCTCTTAAGATTCTAATTAGATTTTTGTCTTGATC-TTTCTCAGGTACTGGTATCTTGGGCCTCTTAAAACCAAAGCAGCTCACTTCTTCAGCACCCTTAAGGTAAATGCAATTTACAATGTAGAA-ATTTGCCCTGTGTTATTTTGTTGTTACTCTGTGATGTGTGTATTTGG-A-TTTTTTAAAAATTCCCTGCTACAGATACATAAGACATGCTCCAATACTAAAATATGGGATACT----TAGATACGAATGCAGAAAGCATTCCTA-TTAGATAAGCCATCGCCTCTC--------------ATCTACTAGC-----------------------------------------------------------TTATTCCCTCCATTACCAAACTCGTACTTAATTTCTCTTTGGCATCCCACTTCCTTTTGCTTATCTATTCACTCACTC--TTGCCAGACAAACCTGGAGTAAAATGACCTATATCTCATCAATTATTTG-TAAGGGTGTCTACATTCATATCTGGAAATGAATTAAAGATTTGCATCCGAATGTATG-----TAATTGTGCAGGCTTGTGTATA-ATGGAGTAGGTTTCAAACTGTCCTAGCAAAATATGGGTAGTGGTTACTGTCTTGAACAGTATAAATAGAGGATATTTCCGACATTGGAGAATGTTCCATCCGGCACTGCTCCTATAGCCTGT---------------------------------------------TCACTGAAAAA-------------------------------------TGTT----------------GCCATAG-AGAAAAGCTGAACCGTGTA-TATTAATGAAAATGCTAATAGAAAAGTCATCCTTATCTGTGGATGACATCCTGTGTTCGGCTTTTATGCAAATCAAAGCAGTATATTCAAAAGTTG-GCAGGTCAATCTGAAAATTGGCAGATGAAGTT----TGTAGTGAAAATATTGGTTTTAATGTTAATATTCAGAG-TGTCAAGGGAttttctaattataaaagtgatgtatgt
i canFam3.chr16            C 0 C 0

a score=15813.000000
s hg38.chr7_GL383534v2_alt      4380 14 +    119183 tccttgcaaaacat
s panTro4.chr7             143104629 14 + 161824586 tccttgcaaaacat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138908662 14 + 157549271 tccttgcgaaacat
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93045505 14 + 110113093 tccttgcaaaacat
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174690395 14 + 192294377 TACCTTTTAAACTT
i macFas5.chr3             I 17 C 0
s papAnu2.chr3             163355847 14 + 180432695 TACCTTTTAAACTT
i papAnu2.chr3             I 17 C 0
s chlSab2.chr21            110388272 14 + 127223203 TACCTTTTAAACTT
i chlSab2.chr21            I 15 C 0
s calJac3.chr8              23734370 14 - 128169293 tcatagcaaaacat
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40384732  3 + 149736546 --CCT---------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52056664 14 -  59632846 ccattgcaaaacat
i canFam3.chr16            C 0 C 0
e rheMac3.chr3             180944443 65 + 198365852 I

a score=885010.000000
s hg38.chr7_GL383534v2_alt      4394 245 +    119183 ttggaaaacatagcttcctttacctttt--aaaaaaattctggctggatt--aaaaaatt----------------------aaatgtaaaacccta------aaatcactgaactactagaagta--aatgt-atgtgatTTTAAAAATGAACTTTGCAGGGCAAGGTCTTTATA-TACCAAGGGCAAACTGGATTAGTAAAATCGGT------TATTCCTCGAG-------TTTCATTGGTGGAGTTGTGAGTGCATTTAGGAAGA--AATAGAGT------------AGCTACATATTTAAATG-----------G
s panTro4.chr7             143104643 245 + 161824586 ttggaaaacatagcttcctttacctttt--aaaaaaattctggctggatt--aaaaaatt----------------------aaatgtaaaacccta------aaatcactgaactactagaagta--aatgt-atgtgattttaaaaatgaacttggcagggcaaggtctttata-taccaaGGGCAAACTGGATTAGTAAAATCGGT------TATTCCTCGAG-------TTTCATTGGTGGAGTTGTGAGTGCATTTAGGAAGA--AACAGAGT------------AGCTACATATTTAAATG-----------G
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138908676 252 + 157549271 ttggaaaacatagcttcctttacctttt--aaaaaaattctggctggatt--aaaaaatt----------------------aaatgtaaaacccta------aaatcactaaactactagaagta--aatgt-aTATGATTTTAAAAATGAACTTGGCAGGGCAAGGTCTTTATA-TACCAAGGGCAAACTGGATTAGTAAAATCAGT------TATCCCTCGAGGGAATAATTTCATTGGTGGAGTTGTGAGTGCATTTAGGAAGA--AACAGAGT------------AGCTACATATTTAAATG-----------G
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93045519 252 + 110113093 ttggaaaacatagCTtcctttacctttt--aaaaaaattctgactggatt--aaaaaatt----------------------aaatgtaaaacccta------aaatcactgaactactagaagta--aatgt-ataagattttaaaaatgaacttggcagggcaaggTCTTTATA-TACAAAGGGCAAACTGGATTAGTAAAATCGGT------TATTCCTCGAGGGAATAATTTCATTGGTGGAGTTGTGAGTGCATTTAGGAAGA--AACAGAGT------------AGCTACATATTTAAATG-----------G
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180944508 252 + 198365852 TTGGAAAACATAGcttcctttacctttt--aaaaaaattctggctggatt--aaaaaatt----------------------aaatgtaaaacccta------aaatcactagactactagaagta--aatgt-atataatTTTAAAAATGAACTTGGCAGGGCAAGGTCTTTATA-TACCAAGGGCAAACTGGATTAGTAAAATCGGT------TACTCCTCGAGGGAATAATTTCATTGGTGGAGTTCTGAGTGCATTTAGGAAGA--AACAGAGT------------AGCTACATATTTAAATG-----------G
i rheMac3.chr3             I 65 C 0
s macFas5.chr3             174690409 252 + 192294377 TTGGAAAACATAGcttcctttacctttt--aaaaaaattctggctggatt--aaaaaatt----------------------aaatgtaaaacccta------aaatcactagactactaaaagta--aatgt-atataatTTTAAAAATGAACTTGGCAGGGCAAGGTCTTTATA-TACCAAGGGCAAACTGGATTAGTAAAATCGGT------TACTCCTCGAGGGAATAATTTCATTGGTGGAGTTCTGAGTGCATTTAGGAAGA--AACAGAGT------------AGCTACATATTTAAATG-----------G
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163355861 252 + 180432695 TTGGAAAACATAGCTtcctttacctttt--aaaaaaattctggctggatt--aaaaaatt----------------------aaatgtaaaacccta------aaatCACTAGACTACTAGaagta--aatgt-atataattttaaaaatgaacttggcAGGGCAAGGTCTTTATA-TACCAAGGGCAAACTGGATTAGTAAAATCGGT------TACTCCTCGAGGGAATAATTTCATTGGTGGAGTTCTGAGTGCATTTAGGAAGA--AACAGAGT------------AGCTACATATTTAAATG-----------G
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110388286 252 + 127223203 GTGGAAAACATAGcttcctttacctttt--aaaaaaattctggctggatt--aaaaaatt----------------------aaatgtaaaacccta------aaatcactagactactagaagta--aatgt-atataatTTTAAAAATGAACTTGGCAGGGCAAGGTCTTTATA-TACCAAGGGCAAACTGGATTAGTAAAATCAGT------TATTCCTCGAGGGAATAATTTCATTGGTGGAGTTCTGAGTGCATTTAGGAAGA--AACAGAGT------------AGCTACATATTTAAATG-----------G
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23734384 260 - 128169293 ttggaaaacatag----CTTTACCTTTCAAAAAAAAATTCTAGCTGGATT--AAAAAATT----------------------AAATGTAAAACACTG------AAATCACTAAAGTACTAGAATTA--AATGT-ATATGATTTT-AAAATGAACTTGGGAGGGCAAGGTCTTTATA-TACCAAAGGCAAATGGGATTAATAAAATGTGT------TATTCCTCAAGGGAATAATTTCACTGGTGAAGTTGTGAGTGCATTTTGGAAGA--AACAGAGT------------AGCTACATATTTAAATGGTAGTCTGAGAG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40384735 232 + 149736546 TTGAAAAATGTAGCTC--------------TAAGAAATTCCAGTTGGATTGAAAAAAATT----------------------AAAAGAAAAAACTAA------AAGTTAGTAAAATACTTGGAGTA--AATACAACATAATT----AAAAAAAATTGAAAAGGCAAGATTGTTCTACTCCTAAGTTCAAACT-GATTAGTAAAAAGTGT------TATTGTTATAGAGAATAATTTCACTGGTTAAGTAGCAATACC--CTGGGAAGC-------AGG------------AGCTGTATGTTTAAATG-----------G
i mm10.chr6                C 0 I 832
s canFam3.chr16             52056678 301 -  59632846 ttggaaaacatagCTCCCCGTATCTTCT--AAATAAATTCTTGTATGTTA--AAGAAATGTaaaaaaaaaaaacaaaacaaaaaacaaaaaacccaaaaaaacaaaaCCCTAAAGTACTAGGGTGACCAATTT-ATATGATTATGAAAATGAACTTGG-AGGGCAAAGCCTCTCTA-CACTGAAGGCAGACTGTTTCAGTAAAATGCATCTTTACTCTTGCTTAAGGGAATAATTTCAGTGGTGGAGTAGTGGGTGCATTTAAGAAGAGTAGCAAAGCTCTACTACGTTAAGTTGTAGAGTCAGGGA-----------G
i canFam3.chr16            C 0 C 0

a score=2737836.000000
s hg38.chr7_GL383534v2_alt      4639 863 +    119183 AATATAAACTGTTGCCACTatttattcagcaaacaatagttga-----------------------catatgcttgggata--caaagtcaaatgagacaggtttcctgccctca--agaagtattcagatgctggga--gggaagtgtaagtaaa-tcagcagtttggcaagtgctgtgagagaaagatagaaagattaagaagggagcagagaggagg----------------------------------ggcatctaaatctaatgagggtcag----aaaatcttcccagcagaggagac----acactaaattttgaaacatttaa-aggctgtgtgaagtcaCAGTGGTGTGACATGGCCCTTAATTATGATTAATGCAGTaaaatggcaggaagtgaagccagtgggttaggtaagggcaggttatggcgggttttgatgtgcaatttgacttttatccttaaagcaatggggagttattgagtcttgagcagaggcatgaaatgagcagatttgcattttagaaaaattgtttttttctaaacagaaaaacagatagga-------tgtaggtagctcaaggcaaggacattagatagaaggttgttaaagtagtcaggtgggaag---tgacgtatagactaaggaggtaac----agtattgacaatagaagatggattaaagaactcttaagttagaacctcaaaagtcagaagaa---tgtaggattatcagatttctggtatgagggactagagtttggtaactggagttttccactgatgttggtaatactaga-------gta-aatcaagtttgtgaagagagatgaaattttcagtttaatctatgtagagtttaacatacctgtggtacagacaagcaaagatacaattgtgatttaggtc-ggaattcagcagagaggtctggactaaagaaacagattca
s panTro4.chr7             143104888 859 + 161824586 AATATAAACTGTTTCCACTatttattcagcaaacaatagttga-----------------------catatgcttgggata--caaagtcaaatgagacaggtttcctgccctca--agaagtattcagatgctggga--gggaagtgtaagtaaa-tcagcagtttggcaagtgctgtgagagaaagatagaaagactaagaagggagcagagaggagg----------------------------------ggcatctaaatctaatgagggtcag----aaaatcttcccagcggaggagac----acactaaattttgaaacatttaa-aggctgtgtgaagtcaCAGTGGTGTGACATGGCCCTTAATTATGATGAATGCAGTaaaatggcaggaagtgaagccagtgggttaggtaagggcaggttatggcgggttttgatgtgcaatttgacttttatccttaaagcaatggggagttattgagtcttaagcagaggcatgaaatgagcagatttgcattttagaaaaattgtttttttctaaacagaaaaacag----ga-------tgtgggtagctcaaggcaaggacattagatagaagattgttaaagtagtcaggtgggaag---tgacgtatagactaaggaggtaac----agtattgacaatagaagacggattaaagaactgttaagttagaacctcaaaagtcagaagaa---tgtaggattatcagatttctggtatgagggactagagtttggtaactggagttttccactgatgttggtaatactaga-------gta-aatcaagtttgtgaagagagatgaaattttcagtttaatctatgtagagtttaacatacctgtggtacagacaagcaaagatacaattgtgatttaggtc-ggaattcagcagagaggtctggactaaagaaacatattca
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138908928 867 + 157549271 AATATAAACTGTTTCCACTatttattcagcaaacaatagttga-----------------------tatatgcttgggata--caaagtcaaatgagacaggttttctgccctca--agaagtattcagatactggga--gggaagtgtaagtaaa-tcagcagtttggcaagtgctgtgagagaaagatagaaagactaagaaaggagcagagaggagg----------------------------------ggcatctaaatctaatgagggtcag----aaaatcttcccagcggaggtgac----acactaagttttgaaacatttaa-aggctgtgtgaagtcaCAGTGGTGTGACATGGCCCTTAATTATGATTAATGCAGTaaaatggcaggaagtgaagccagtgggttaggtaagggcaggttatggtgggtttttgtgtgcaatttgacttttatccttaaagcaatggggagttattgagtcttaagcagaggcatgaaatgagcagatttgcattttagaaaaattgtttttttctaaacagaaaaacagatagga-------tgtgggtagctcaaggcaaggacattagatagaagattgttaaagtagtcaggtgggaag---tgacgtatagactaaggaggtaac----agtattgacaatagaagaaggattaaagaactgttaagttagaacctcaaaagtcagaagaatactgtagtattatcagatttctggtatgagggactagaatttggtaactggagttttccactgatgttgataatactaga-------gta-aatcaagtttgtgaagagagatgaaattttcagtttaatctatgtagagtttaacatacctgtggtacagacaagcaaagatacaattgtgatttaggtctggaattcagcagagaggtctggactaaagaaacagattca
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93045771 868 + 110113093 AATATAAACTGTTTCCACTatttattcagcaaacaatagttga-----------------------tatatgcttgggata--caaagtcaaatgggaaaggtttcctgccctca--agaagtattcagatgctggga--gggaagtgtaagtaaa-tcagcagtttggcaagcactgtgagagaaagatagaaagactaagaagggagcagagaggagg----------------------------------ggcatccaaatctaatgagggtcag----aaaatcttcccagtggaggtgacaattacactaaattttgaaacatTTAA-AGGCTATGTGAAGTCACAGTGGTGTGACATGGCCCTTAATTATGATTAATGCAGTaaaatggcaggaagtgaagccagtgggttaggtaagggcaggttatggcgggttttgatgtgcaatttgacttttatcctcaaagcaatggggagttattgagtcttaagcagaggcatgacatgagcagatttgcatcttagaaaaattgtttttttctaaacagaaaaacag----ga-------tgtgggtagctcaaggcaaggacatgagatagaagattgttaaagtagtcaggtgggaag---tgacatatagactaaggaggtaacagtgagtattgacaatagaagacagattaaagaactgttaagttagaacctcaaaagtcagaagaa---tgtaggtttatcagatttctggtatgagggactagagtttggtaactggagttttccactgatattgataatactaga-------gta-aatcaagtttgtgaagagagatgaaattttcagtttaatctatgtagagtttaacatacctgtggtacagacaagcaaagatacaattgtgatttaggtctggaattcagcagagaggtctggactaaagaaacagattca
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180944760 857 + 198365852 AATATAAACTGTTTCCACcgtttattcagcaaacagttgttga-----------------------tatatgcttgggata--caaagtcacatgagacaggtttcctgccctcagtagaagtattcatatgctggga--gggaagtgtaagcaaa-tcagcagttaggccagtgctgtgagagacagatagaaagactaagacgggagcagagaggagg----------------------------------ggcatctcaatctagtgagggtcgg----gaaatcttccc-ggggaggtgacacttacactaaattttgaaacatTTAA-AGGCTGTGTGAAGTCACAGTGGTGTGACATGGCCCTTAATTATGATTAATGCAGTaaaatggcaggaagtgaagccagtgggttaggtaagggcaggttatggcagggtttgatgtgcaatttgacttttatccttaaagcaatggggagttattgagtcttaagcagaggcatgacatgagcagatttgcattttagaaaaattgtttttttctaaac--aaaaacagatagga-------tgtaggtagctcaagtcaaggacattagatagaatattgttaaagtagtcaggtgggaag---taacatatagactaaggaggtaacagtgagtattgacagtagaagacggattaaagaactgttaagttagaacctcaaaagtcagaagaa---tataggattatcagatttctggtatgagggactagagtttggtaattggagttttccactgatgttgataatactaga---------------------gtgaagagagatgaaattttcagtttaatctatgtagag-ttaacatacctgtggtacagacaagcaaagataaaattgtgatttaggtctggaattcagcagagaggtctgggctacagaaacagattca
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174690661 860 + 192294377 AATATAAACTGTTTCCACcgtttattcagcaaacagttgttga-----------------------tatatgcttgggata--caaagtcacatgagacaggtttcctgccctcagtagaagtattcatatgctggga--gggaagtgtaagcaaa-tcagcagttaggccagtgctgtgagagacagatagaaagactaagacgggagcagagaggagg----------------------------------ggcatctcaatctagtgagggtcgg----gaaatcttcccaggggaggtgacacttacactaaattttgaaacatTTAA-AGGCTGTGTGAAGTCACAGTGGTGTGACATGGCCCTTCATTATGATTAATGCAGTaaaatggcaggaagtgaagccagtgggttaggtaagggcaggttatggcagggtttgatgtgcaatttgacttttatccttaaagcaatggggagttattgagtcttaagcagaggcatgacatgagcagatttgcattttagaaaaattgtttttttctaaacagaaaaacagatagga-------tgtaggtagctcaagtcaaggacattagatagaatattgttaaagtagtcaggtgggaag---taacatatagactaaggaggtaacagtgagtattgacagtagaagacggattaaagaactgttaagttagaacctcaaaagtcagaagaa---tataggattatcagatttctggtatgagggactagagtttggtaattggagttttccactgatgttgataatactaga---------------------gtgaagagagatgaaattttcagtttaatctatgtagag-ttaacatacctgtggtacagacaagcaaagatacaattgtgatttaggtctggaattcagcagagaggtctgggctacagaaacagattca
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163356113 860 + 180432695 AATATAAACTGTTTCCACCGTTTATTCAGCAAACAGTTGTTGA-----------------------TATATGCTTGGGATA--CAAAGTCAAATGAGACAGGTTTCCTGCCCTCAGTAGAAGTATTCATATGCTGGGA--GGGCAGTGTAAGCAAA-TCAGCAGTTAGGCCGGTGCTGTGAGAGACAGATAGAAAGACTAAGACgggagcagagaggagg----------------------------------ggcATCTCAATCTAGTGAGGGTCAG----GAAATCTTCCCAGGGGAGGTGACACTTACACTAAATTTTGGAACATTTAA-AGGCTGTGTGAAGTCACAGTGGTGTGACATGGCCCTTAATTATGATTAATGCAGTAAAATGGCAGGAAGTGAAGCCAGTGGGTTAGGTAAGGGCAGGTTATGGCGGGGTTTGATGTGCAATTTGACTTTTATCCTTAAAGCAATGGGGAGTTACTGAGTCTTAAGCAGAGGCATGACATGagcagatttgcattttagaaaaattgtttttttctaaacagaaaaacagatagGA-------TGCAGGTAGCTCAAGTCAAGGACATTAGACAGAATATTGTTAAAGTAGTCAGGTGGGAAG---TAACATATAGACTAAGGAGGTAACAGTGAGTATTGACAGtagaagatggattaaagaactGTTAAGTTAGAACCTCAAAAGTCAGAAGAA---TATAGGATTATCAGATTTCTGGTATGAGGGACTAGAGTTTGGTAATTGGAGTTTTCCACTGATGTTGATAATACTAGA---------------------GTGAAGAGAGATGAAATTTTCAGTTTAATCTATGTAGAG-TTAACATACCTGTGGTACAGACAAGCAAAGATACAATTGTGATTTAGGTCTGGAATTCAGCAGAGAGGTCTGGACTACAGAAACAGATTCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110388538 876 + 127223203 AATATAAACTATTTCCACcatttattcagcaaacagttgttga-----------------------tatatgcttgggata--caaagtcaaatgagacaggtttcctgccctcagtagaagtattcatatgctggga--gggaagtgtaagcaaa-tcagcagttaggccagtgctgtgagagacagatagaaagactaagacaggagcagagaggagg----------------------------------ggcatctcaatctaatgagggtcag----gaaatcttcccaggggaggtgacacttacactaaattttgaaacatTTAA-AGGCTGTGTGAAGTCACAGTGGTGTGACATGGCCCTTAATTATGATTAATGCAGTaaaatggcaggaagtgaagccagtgggttaggtaagggcaggttatggcggggtttgatgtgcaatttgacttttatccttaaagcaatggggagttattgagtcttaagcagaggcatgacatgagcagatttgcattttagaaaaattgtttttttctaaacagaaaaac----agga-------tgtaggtagctcaagtcaaggacatttgatagaagattgttaaagtagtcaggtgggaag---taacatatagactaaggaggtaacagtgagtattgacagtagaagacggattaaagaactgttaagttagaacctcaaaagtcagaggaa---tataggattatcagatttctggtatgagggactagagtttggtaattggagttttccactgatgttgataatactagagtaaagagta-aatcaagtttgtgaagagagatgaaattttcagtttaatctatgtagag-ttaacatacctgtggtacagacaagcaaagatacaattgtgatttaggtctggaattcagcagagaggtctggactacagaaacagattca
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23734644 835 - 128169293 AATGTAAACTGTTTCCACcatttattcagcaaacaattgttga-----------------------tgtatgcttgggatg--caaagtcaaatgagacaggtttcctaccctca--agaagtattcatgtgctggga--gggaggca-aagtaaa-tcagcagttagat-----------------------------------ggggcagaggggagg----------------------------------ggcatctaaaactaatgaaggtcag----aaactcttcccaagggaggtgacacttacactaaattttgaGACATTTAATATGCTGTGTGAAGTCACAGTGGTGTGACATGGCCCTTAATTAAGATTAATGCAGTaaaatggcaggaagtgaagccagtgggttaggtaagggcaggttatggcaggttttgatatgcaatttgacttttatcctgaaagtgatggggagttactgagtcttaagcagaggcacgacaggagcagatttgcattttagaaaaattgtttttttctaaacagaaaaacagatagga-------catgggtagctcaaggcaaggacattagatagaagattgttaaagtagtcaggtgggaag---tgacatatagactaaggaagtaacagggaccattgacaatagaagatagattaaagagctattaaattagaacctcaaaagtcagaagaa---tataggattattatatttctggtatgagggactacggtttggtaactggagttttccactgacgttgataatactagt-------gta-aatcaagtttgttaacagagatgaaattttcaatttaatc--tgttgagtttaacatacctgtggtacagacaagcaaagatacaattgtgatttaggtctggaattcagcagagaggtctggactatagaaacaaatgca
i calJac3.chr8             C 0 I 1324
s canFam3.chr16             52056979 858 -  59632846 AACATAAACTGTTTCCAGcatttcttcagtaaacagttattaaatatctagtggggccagccctgctgtctgcttggagtgttcaaagtcaaataagacaggtttcctcccctcc--aggaggatccacgtgcagggagtgtgaggggcaagtaagcCCCGTGGTCTGGCAAGTGCAAGGACAG-CGTATGGAAAGA-TAAGGTGGGGGCAGACAGGAGGCAGCAGCCCTCCCAGGGCAGAGAACACTTATACTGGAGTTTGAATCTGTACAGGACTAGAGCAAAGGCATTCCGGGTGGAGGAACC----------------------------AGGCTGTGTGAAATGGCCGTGATGTCACACAGCT----------GCCAGGGCAGCCGAGCAGCAGGGAG-------GGGGTGTCGAGGGAGGGCTAGGCATGGCAGGTTTGGATGTGGCGtctgacttttaccatgaaagcgttggggagttgctgagtcttaagcaggggagagataggaccaggtctgcattttagaaaagttatttgt-------caggagtgtagacaagagattgcctgccggtagttgaaggcaagggcaccagaccaaagattgttca---aggcaggtgagaagcgatgaggtccag-ccaggatgccaactgtgtgtgctgacagcagagggtgggtgaaaggggtcgTGAGGTGGCCCCTTTGAAAATGGGGGAT---GAGAGGAGTCCCTGGTTTCTG--ATCGGGGCCTA--GTTCACTAACT--AGTTTTCTGTTAACACTGACAATATTAGA-------GTAGGATCAAATTTGTGGAGAAAGGGGATGTTTTCAGTTTGGCACATACGGAGGTCAGCCTCCCTGTGG---AGACAGGCGGAGATTCAGTTGTGACTTAGGTCTG-------------------------AAGACACAGGTGTA
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40384967 832 + 149736546 I

a score=1187187.000000
s hg38.chr7_GL383534v2_alt      5502 464 +    119183 aatgtcataagtgtgtgagcggtgttgaaaccatgggttgggtgaaattaccattgagtacagatgg--ccaggaatatccctaagggacataaacatttaaagaaccaccaaaaatgactgagaagtgctaagagaaaatg------caggagagaatactaacatagaagccaatagaagagagaatttcaagaaaaaagtaagagtttcgagaagcaaaagcaaagactttaaatatacagacaagagagtatccatcgaatttggcagcctc-----caaaagctgggc-agcctccaaagtgtggtggctgaagccagactgaagaaagtcaagaaataaaagtgatgtaaaga-agtggagacagcaaggacacgctactccttcaagaaacctgactttgaagagaaggagatagggaaggcaaaagct-gagagaaacatggggtcaatatggaattttta----------------------------------------------------aaagtggagaa
s panTro4.chr7             143105747 464 + 161824586 aatgtcataagtgtgtgagcggtgttgaaaccatgggttgggtgaaattaccattgagtacagatgg--ccaggaatatccctaagggacataaacatttaaagaaccaccaaaaatgactgagaagtgctaagagaaaatg------caggagagaatactaacatagaagccaacagaagagagaatttcaagaaaaaagtaagagtttcgagaagcaaaagcgaagactttaaatatacagacaagagagtatccatcgaatttggcagcctc-----caaaagctgggc-agcctccaaagtgtggtggctaaagccagactgaagaacatcaagaaataaaagtgatgtaaaga-agtggagacagcaaggacaggctactccttcaagaaacctgactttgaagagaaggagatagggaaggcaaaagct-gagagaaacatggggtcaatatggagttttta----------------------------------------------------aaagtggagaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138909795 464 + 157549271 aatgtcataagtgtgtgagcagtgttgaaaccatgggttgggtgaaattaccattgagtacagatgg--ccaggaatatccctaagggacataaacatttaaagaaccaccaaaaatgactgagaagtgctgagagaaaatg------cacgagagaatactaacatagaagccaatagaagagagaatttcaagaaaaaagtaagagtttcgagaagcaaaagcaaagactttaaatatacagacaagagagtatccatcgaatttggcagcctc-----caaaagctgggc-agcctccaaagtgtggtggctgaagccagattgaagaaagtcaagaaataaaagtgatgtaaaga-agtggagacagcaaggacaggctactccttcaagaaacctgactttgaagagaaggagatagggaaggcaaaagct-gagagaaacacggggtcaatatggagttttta----------------------------------------------------aaagtggagaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93046639 460 + 110113093 aatgtcataagcgtgtgagcggtgttgaaaccatgggttgggtgaaattaccgttgagtacagatgg--cctgcaatatccctaagggacataaacatttaaagaaccaccaaaaatgact--gaagtgctaagagaaaatg------caggaaagaatactaatatagaagccagtagaagagagaatttcaagaaaaaagtaagagtttcgagaagcaaaagcaaagactttaaatatacagac--gagagtatccatcgaatttggcagcctc-----caaacgctgggc-agcctccaaagtgtggtggctgaagccagattgaagaaagtcaagaagtaaaagtgatgtaaaga-agtggagacagcaaggacaggctactccttcaagaaacctgactttgaagagaaggagatagggaaggcaaaagct-gagagaaacatggggtcaatatggagttttta----------------------------------------------------aaagtggagaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180945617 464 + 198365852 aatgtcataagtgtgtgagcggtgttgaaaccatgggttgggtgaaattaccattcagtacagatgg--ccaggaatatccctaagggacataaacatttaaagaactaccagaaatgactgagaagtgctaagagaaaatg------caggagagaatactaacatagaagccaatagaagagagaatttcaagataaaagtaagagtttcaagaagcaaaggcaaagactttaaatatacagacaagagagtatccatcgaatttggcagcctc-----caaaagctgggc-agcctccaaagtgtggtggctgaagcctggttgaagaaagtcgagacataaaagtgatgtaaaga-agtggagatggcaaggacaggctactccttcaagaaacctgactttgaagagaaggagatagggaaggcaaaagct-gagagaaacatgggatcaatatggagttttta----------------------------------------------------aaagtggagaa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174691521 464 + 192294377 aatgtcataagtgtgtgagcggtgttgaaaccatgggttgggtgaaattaccattcagtacagatgg--ccaggaatatccctaagggacataaacatttaaagaactaccagaaatgactgagaagtgctaagagaaaatg------caggagagaatactaacatagaagccaatagaagagagaatttcaagagaaaagtaagagtttcaagaagcaaaggcaaagactttaaatatacagacaagagagtatccatcgaatttggcagcctc-----caaaagctgggc-agcctccaaagtgtggtggctgaagcctggttgaagaaagtcgagacataaaagtgatgtaaaga-agtggagatggcaaggacaggctactccttcaagaaacctgactttgaagagaaggagatagggaaggcaaaagct-gagagaaacatgggatcaatatggagttttta----------------------------------------------------aaagtggagaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163356973 464 + 180432695 AATGTCATAAGTGTGTGAACAGTGTTGAAATCATGGGTTGGGTGAAATTACCATTCAGTACAGATGG--CCAGGAATATCCCTAAGGgacataaacatttaaagaagtacCAAAAATGACTGAGAAGTGCTAAGAGAAAATG------CAGGAGAGAATACTAACGTagaagccaatagaagagagaatttcaagagaaaagtaagagtttcaagaagcaaaagcaaagattttaaatatacagaCAAGAGAGTATCCATCAAATTTGGCAGCCTC-----CAAAAGCTGGGC-AGCCTCCAAAGTGTGGTGGCTGAAGCCCGGTTGAAGAAAGTCGAGACATAAAAGTGATGTAAAGA-AGTGGAGATGGCAAGGACAGGCTACTCCTTCAAGAAACCTGACTTTGAAGAGAAGGAGATAGGGAAGGCAAAAGCT-GAGAGAAACATGGGATCAATATGGAGTTTTTA----------------------------------------------------AAAGTGGAGAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110389414 464 + 127223203 aatgtcataagtgtgagagcggtgttgaaatcatgggttgggtgaaattaccattcagtacagatgg--ccaggaatatccctaagggacataaacatttaaagaactaccaaaaatgactgagaagtgctaagagaaaatg------caggagagaataccaacgtagaagccaatagaagagagaatttcaagagaaaagTAAGAGTTTCAAGAAGCAAAAGCAAAGACTTTAAATATACAGACAAGAGAGTATCCATCAAATTTGGCAGCCTC-----CAAAAGCTgggc-agcctccaaagtgtggtggctgaagcctggttgaagaaagtcgagacataaaagtgatgtaaaga-agtggagatggcaaggacaggctactccttcaagaaacctgactttgacgagatggagttagggaaggcaaaagct-gagagaaacatgggatcaatatggagttttta----------------------------------------------------aaagtggagaa
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52057837 443 -  59632846 GACGTCCTGAGTGCTGGAGTGGTGTTGCAACTCGGGGTTTGACGAGGTTGCCGTGTAGAGCAAACGAGCCCATGGTTAGCCCCGAGGACTGTAGGCATTTAGGGAACCA-CGGAGCTGCCCGTGGAGCACTGAGGGGAAGGGGGTCCCCATGAGGG-----TCACACACACGCCAGCCCCGG-----------------GAGTGGGAGTGTTG-----------------------------GGACAGGAGGGCACCCACTGAACGGGGCAGCCTCAGCCTCGGAAGCTCTGCTCACCTCCGAG--GGGGCAGCTG-AGCCACATTGAA---------------------ATGCCAAGACAGTGGAGGGGG---------ACCGCTCCTTCAGGAGGCCTGACTTGGAGAGGAGAGAGCTAGGAAAGGCCAGAGCTAGTGAGAAAGACAGG----CCATGGACTGTTTAATTGCGTAGAGAGAGCGCAGTGCCTTTCTGCCCTGAAACAAAAGACAGGAAGAAAGGGAAGAG
i canFam3.chr16            C 0 I 115
e mm10.chr6                 40384967 832 + 149736546 I
e calJac3.chr8              23735479 1324 - 128169293 I

a score=138753.000000
s hg38.chr7_GL383534v2_alt      5966  62 +    119183 tatccatgtgtttct-------------------------------------------agactgaagaaa----------aagaaaagaatgtgaggaggt---gagaagggagacag----
s panTro4.chr7             143106211  62 + 161824586 tatccatgtgtttct-------------------------------------------agactgaagaaa----------aagaaaagaatgtgaggaggt---gagaagggagacag----
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138910259  62 + 157549271 tatccatgtgtttct-------------------------------------------agactaaagaaa----------aagaaaagaatgtgaggtggt---gagaagggagacag----
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93047099  62 + 110113093 tatccatgtgtttct-------------------------------------------agactgaagaaa----------aagaaaataatgtgaggaggt---gagaagggagacag----
i nomLeu3.chr13            C 0 I 310
s rheMac3.chr3             180946081  65 + 198365852 tatccttgtgtttct-------------------------------------------agactgaagaaa----------aagaaaagaatgtgaggaggtgaggagaagggagacag----
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174691985  65 + 192294377 tatccttgtgtttct-------------------------------------------agactgaagaaa----------aagaaaagaatgtgaggaggtgaggagaagggagacag----
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163357437  65 + 180432695 TATCCTTGTGTTTCT-------------------------------------------agactgaagaaa----------aagaaaagaatgtgaggaggtgaggagaagGGAGACAG----
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110389878  60 + 127223203 tatccatgtgtttct-------------------------------------------agactgaaga---------------aaaagaatgtgaggaggtgaggagaagggagacag----
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52058395 121 -  59632846 tctgcctgtgtctctgcctctctctctctctctctgtctctcatgaataaataaataaaatctaaaaaaaaaTTTTTTTTAAAAAAAGGGGGGGAGCAGGTGA-GAGACAAGAGACAGACGC
i canFam3.chr16            I 115 C 0
e mm10.chr6                 40384967 832 + 149736546 I
e calJac3.chr8              23735479 1324 - 128169293 I

a score=1583211.000000
s hg38.chr7_GL383534v2_alt      6028 588 +    119183 aaagcatgactgaattggcaaaatccaagagcgggtagaagggcgtgggatccagagtactggattgtccctggacaggacaaggggcaccttttttcattgatacagaagaggagt-aaagggtaggtccagatgaaaatgagattagagaaagttaaggta-ttctcactgatgtccctgatattctcactgaagtgtaggaagcaaagtgatcCTGTCAGAAAGGTGGTGAG---TAGTGGTATGGGGTATCCTGAAGAAAGATGAAT-GTAGGAGGAGGCTT---AGGATTATCAAGTAGCACTGAAGACCTGAGGCTAACAATTTGT--AGACATGAATGCTCCTTTGGGTGACTGCTTTTCCCTGTATTAATACTCAGCAGGAGTATCATTTTCTTCTCTAGTAATACTGAGCCATGATGTAAGAGTACAGGAACTTAATGACAAGGCTGATCCAGAACTGGGGCTTTTTAGG--ACATATTGTAGAAGA-ATAAAGACACAGGAAAGCCAAGAGTAAGTGGAAAAAGAAAGCACTTG-AAAGTAATTGACTATCAGTTTGGCACTGAGGGGAAAATGAGTGGTCAGGGAGTAGAAT
s panTro4.chr7             143106273 588 + 161824586 aaagcatgactgaattggcaaaatccaagagtgggtagaagggtgtgggatccagagtactggattgtccctggacaggacaagggacaccttttttcattgatacaggagaggagt-aaagggtaggtccagatggaaatgagattagagaaagttaaggta-ttctcactgatgtccctgatattctcactgaagtgtaggaagcaaagtgatcctgtcagaaaggcggtgag---tagtggtatggggtatcctgaagaaagatgaAT-GTACGAGGAGGCTT---AGGATTATCAAGTAGCACTGAAGACCTGAGGCTAACAATTTGT--AGACATGAATGTTCCTTTGGGTGACTGCTTTTCCCTGTATTAATACTCAGCAGGAGTATCATTTTCTCCTCTAGTAATACTGAGCCATGATGTAAGAGTACAGGAACTTAGTGACAAGGCTGATCCAGAACTGGGGCTTTTTAGG--ACATATTGTAGAAGA-ATAAAGACACAGGAAAGCCAAGAGTAAGTGGAAAAAGAAAGCAATTG-AAAGTAATTGACTATCAGTTTGGCAGTGAGGGGAAAATGAGTGGTCAGGGAGTAGAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138910321 587 + 157549271 aaagcatgactgaattggcaaaatccaagagcgggtagaagggtgtgggatccagagtactggattgtccctggacaggacaagggacaccttttttcattgatacagaagaggagt-aaagggtaggtccagatgaaaatgagattagagaaagttaaggta-ttctcactgatgtccctgatattctcactgaagtgtaggaagcaaagtgatcctgtcagaaaggcggtggg---tagtggtatggggtatcctgaagaaagatgaat-ataggaggaggctt---aggattatcaagtagcactgaagacctgaggctaacaatttgt--agacatgaatgctcctttgggtgactgcttttccctgtattaatactcagcaggagtatcattttctcctctagtaatactgagccatgatgtaagagtacaggaacttagtgacaaggctgatccagaattggggctttttagg--acatattgtagaagg-ataaagacacaggaaagccaagagtaagtggaaaaagaaagcgattg-aaagtaattgactatcagtttggcactga-gggaaaatgagCGGGCAGGGAGTAGAAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93047471 588 + 110113093 aaagcatgactgaattggcaaaatccaagagcaggtagaagggtgtgggatctagagtactggattgttcctggacaggacaagagacaccttttttcattgatacaggagaggagtaaaagggtaggtccagatgaaaatgagattagagaaagttaaggta-ttctcactgatgtccctgatgttctcactgaagtgtaggaagcaaagtgatcctggcagaaaggcggtggg---tagtggtatggggtatcctgaagaaagatgaAT-GTGGGAGGAGGCTT---AGGATTATCAAGTAGCACTGAAGACCTGAGGCTAACAATTTGT--AGACATGAATGCTCCTTTGGGTGACTGCTTTTCCCTGTATTAATACTTAGCAGGAGTATCATTTTCTCCTCTAGTAATACTGAGCCATGATGTAAGAGTACAGGAACTTAGTGACAAGGCTGATCCAGAATTGGGGCTTTTTAGG--ACATATTGTAGAAGA-ATAAAGACACAGGAAAGCCAAGAGTAAGTGGAAAAAGAAAGCGATTG-AAAGTAACTGACTATCAGTTTGGCACTGA-GGGAAAAAGAGTGGTCAGGGAGCAGAAT
i nomLeu3.chr13            I 310 C 0
s rheMac3.chr3             180946146 586 + 198365852 aaagcatgactgaattggcaaaatccaagagcaggtagaagggtgtgggatccagagtcctggattgtccctggacaggagaagggacaccttttttcattgatacaggagaggagt-aaagggtaggtccagataaaaatgagattagagaaagttaaggta-ttctcactgacgtccctgatattctcactgaagtataggaagc--agtcatcctgtcagaaaggcggtggg---tagtggtatgggggattctgaagaaagatgaat-gaaggAGGAGGCTT---AGGATTATCAAGTAGCATTGAAGACCTGAGGCTAACGATTTGT--AGACACGAATGCTCCTTTGGGTGACTGCTTTTCCCCATATTAGTACTCAGCAGGAGTATCATTTTCTCCTCTAGTAATACTGAGCCATGATGTAAGAGTACAGGAACTTAGTGACAAGGCTGATCCAGAATTGGGGCTTTCTAGG--ACATATTGTAGAAGA-ATAAAGACACAGGAGAGCCTGGAGTAAGTGGAAAAAGAAAGCGATTGAAAAGTAATGGACTATCAGTTTGGCACTGA-GGGAAAATGAGTGGTCAGGGAGTAGAAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174692050 585 + 192294377 aaagcatgactgaattggcaaaatccaagagcaggtagaagggtgtgggatccagagtcctggattgtccctggacaggagaagggacaccttttttcattgatacaggagaggagt-aaagggtaggtccagataaaaatgagattagagaaagttaaggta-ttctcactgacgtccctgatattctcactgaagtataggaagc--agtcatcctgtcagaaaggcggtggg---tagtggtatgggggattctgaagaaagatgaat-gaaggAGGAGGCTT---AGGATTATCAAGTAGCATTGAAGACCTGAGGCTAACGATTTGT--AGACACGAATGCTCCTTTGGGTGACTGCTTTTCCCCATATTAGTACTCAGCAGGAGTATCATTTTCTCCTCTAGTAATACTGAGCCATGATGTAAGAGTACAGGAACTTAGTGACAAGGCTGATCCAGAATTGGGGCTTTCTAGG--ACATATTGTAGAAGA-ATAAAGACACAGGAGAGCCTGGAGTAAGTGGAAAAAGAAAGCGATTG-AAAGTAATGGACTATCAGTTTGGCACTGA-GGGAAAATGAGTGGTCAGGGAGTAGAAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163357502 585 + 180432695 AAAGCATGACTGAATTGGCAAAATCCAAGAGCAGGTAGAAGGGTGTGGGATCCAGAGTCCTGGATTGTCCCTGCACAGGAGAAGGGACACCTTTTTTCATTGATACAGGAGAGGAGT-AAAGGGTAGGTCCGGATAAAAATGAGATTAGAGAAAGTTAAGGTA-TTCTCACTGACGTCCCTGATATTCTCACTGAAGTATAGGAAGC--AGTCATCCTGTCAGAAAGGCGGTGGG---TAGTGGTATGGGGGATTCTGAAGAAAGATGAAT-GAAGGAGGAGGCTT---AGGATTATCAAGTAGCATTGAAGACCTGAGGCTAACGATTTGT--AGACACGAATGCTCCTTTGGGTGACTGCTTTTCCCCATATTAGTACTCAGCAGGAGTATCATTTTCTCCTCTAGTAATACTGAGCCATGATGTAAGAGTACAGGAACTTAGTGACAAGGCTGATCCAGAATTGGGGGTTTCTAGG--ACATATTgtagaata-ataaaaacacaggAGAGCCTGGAGTAAGTGGAAAAAGAAAGCGATTG-AAAGTAATGGACTATCAGTTTGGCACTGA-GGGAAAATGAGTGGTCAGGGAGTAGAAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110389938 586 + 127223203 aaagcatgactgaattggcaaaatccaagagcaggtagaagggtgtgggatccagaatcctggattgtccctggacaggagaagggaccccttttttcattgatacaggagaggagt-aaagggtaggtccagatgaaaatgagattagagaaagttaaggta-ttctcactgatgtctctgatattctcactgaagtataggaagc--cgtcatcctgtcagaaaggcggtggg---tagtggtatgggggattctgaagaaagatgaATGGAGGGAGGAGGCTT---AGGATTATCAAGTAGCATTGAAGACCTGAGGCTAACGATTTGT--AGACACGAATGCTCCTTTGGGTGACTGCTTTTCCCTGTATTAATACTCAGCAGGAGTATCATTTTCTCCGCTAGTAATACTGAGCCATGATGTAAGAGTGCAGGAACTTAGTGACAAGGCTGATCCAGAATTGGGGCTTTCTAGG--ACATATTGTAGAAGA-ATAAAGACACAGGAGAGCCTGGAGTAAGTGGAAAAAGAAAGCGATTG-AAAGTAATTGACTATCAGTTTGGCACTGA-GGGAAAATGAGTGGTCAGGGAGTAGAAT
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52058516 556 -  59632846 AGAGCCTGACTGAACCTGCAAAACTCAAACACAGGTCGGAGGGCATGGGGCCCTTGGTACTGGGCCAGCCTGGGATGGAGGAGGGG------------------ATGGGAGAGAACT-AGAGCCAAGGTCCAGATGCAAACAAATGAAGAGAGGGTTAAGGCAGTTCCCACTGTCGTC-CTGA----CTCGCTGAAGCATGGGGAGC-CAGGGAATATGTTGAAAATGAGGTGGGCGCTAGGGGTTGGGGGGATCTTAAAGAGAGATGAAA-ATAG--GGAGGTTTGGAAGGATCAACAAGTAGTATTGAGGACCTGAGACCAAAGATTTGTTGTGGCACAGGTGCGCC------------CTGTTCCCTGAGTCAGTACCAACCTGGAGTATTGTTTGCCCATCTAGTAACACTGAGCCACAGAGTGCAAGTACAGAAACCTAGTGACAAGCTCGATCCAGAATAGGGGCTTCTCAGGGCACATATTATGTAACACCCAAAGACACATGAGGACCAACAGTGATGGGAAAAGG---GTGATTT-AAAGTAATCAACT-TCA-TTAAGCACTGA-GAGAAAATGGTGTATCCGGGCCTGGAAT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40384967 832 + 149736546 I
e calJac3.chr8              23735479 1324 - 128169293 I

a score=1021758.000000
s hg38.chr7_GL383534v2_alt      6616 301 +    119183 CCTCAATGTGATTGAAAACTTGGTGC--Agttaggtcttcaggggcccacaataaaacccctctcttcctctttttagtttgaaccaaggtatgaaaacaaatgcaggaactaggcagatgaagatcaaaacgtcatctttataaatgtcagcaggagtggaggacagagcacagat-acgtggtctctatctgatctcctaatactgTGAAC-AAAGGTGTCCA-TTGAAACAGCTCCTTCAGGGCAGAGACCACCACAAGAAGCTAATTTTCACCACATGAAAATT---AGAAGCAGTGACCGTTTG
s panTro4.chr7             143106861 302 + 161824586 CCTCAATGTGATTGAAAACTTGGTGC--Agttaggtcttcaggggcccacaataaaatccctctcttcctctttttagtttgaaccaaggtatgaaaacaaatgcaggaactaggcagatgaagatcaaaacgtcatctttataaatgtcagcaggagtggaggacagagcacagat-atgtggtctctatctgatctcctaatactgTGAACTGAAGGTGTCCA-TTGAAACAGCTCCTTCAGGGCAGAGACCACCACAAGAAGCTAATTTTCACCACATGAAAATT---AGAAGCAGTGACCGTTTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138910908 305 + 157549271 CCTCAATGTGAATGAAAACTTGGTGC--Agttaggtcttcaggggcccacaagaaaacccttctcttcctctttttagtttgaaccaaggtatgaaaacaaatgcaggaactaggcagatgaagatcaaaacgtcatctttataaatgtcagcaggagtggaggacagagcacagat-acgtggtctctatctgatctcctaatactgTGAACTGAAGGTGTCCA-TTGAAACAGCTCCTTCAGGGCAGAGACCACCACAAGAAGCTAATTTTCACCACATGAAAATTAGAAGAAGCAGTGAACGTTTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93048059 305 + 110113093 CCTCAATGTGATTGAAAACTTGGTGC--Agttaggtcttcaggggcccacaataaaacccctctcttcctctttttagtttgaaccaaggtatgaaaacaaatgcaggaactaggcagatgaaggtcaaaatgtcatctttataaatgtcagcaggagtggaggacaaagcacagat-atgtggtctctatctggtctcctaacactgTGAACTGAAGGTGTACA-TTGAAACAGCTCCTTCAGGGCAGAGACCACCAGAAGAAGCTAATTTTCACCACATGAAAATTAGAAGAAGCAGTGAACGTTTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180946732 302 + 198365852 CCTCAGTGTGATTGAAAACTTGGGGC--ATttaggtcttcagaggcccacaataaaacccctctcttcctctttttagtttgaaccaaggtatgaaaacaaatgtaggaactaggcagatgaagatcaaaacgtcagctttataaatgtcagcaggagtggaggacagagcacagat-acgtggtctctgtctgatctcctaatactgTGAACTGAAAGTATCCA-CTGAAACAGCTCCTTCAGGGCAGAGACCACCACAAGAAGCTAATTTTCACCACATAAAAATT---AGAAGCAGTGAACGTTTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174692635 305 + 192294377 CCTCAGTGTGATTGAAAACTTGGGGC--ATttaggtcttcagaggcccacaataaaacccctctcttcctctttttagtttgaaccaaggtatgaaaacaaatgtaggaactaggcagatgaagatcaaaacgtcagctttataaatgtcagcaggagtggaggacagagcacagat-acgtggtctctatctgatctcctaatactgTGAACTGAAAGTATCCA-CTGAAACAGCTCCTTCAGGGCAGAGACCACCACAAGAAGCTAATTTTCACCACATAAAAATTAGAAGAAGCAGTGAACGTTTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163358087 305 + 180432695 CCTCAGTGTGATTGAAAACTTGGGGC--ATTTAGGTCTTCAGAGGCCCACAATAAaacccctctcctcctctttttagTTTGAACCAAGGTATGAAAACAAATGTAGGAACTAGGCAGATGAAGATCAAAACGTCAGCTTTATAAATGTCAGCAGGAGTGGAGGACAGAGCACAGAT-ACGTGGTCTCTATCTGATCTCCTAATACTGTGAACTGAAAGTATCCA-TTGAAACAGCTCCTTCAGGGCAGAGACCACCACAAGAAGCTAATTTTCACCACATGAAAATTAGAAGAAGCAGTGAACGTTTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110390524 305 + 127223203 CCTCAATGTGATTGAAAACTTGCAGC--Agttaggtcttcagaggaccacaataaaacccctctcttcctctttttagtttgaaccaaggtatgaaaacaaatgtaggaactaggcagatgaagatcaaaacgtcagctttataaatgtcagcaggagtggaggacagagcacagat-acgtggtctctatctgatctcctaatactgTGAACTGAACGTATCCA-TTGAAACAGCTCCTTCAGGGCAGAGACCACCACAAGAAGCTAATTTTCACCACATGAAAATTAGAAGAAGCAGTGAACGTTTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23736803 290 - 128169293 CCTCAATGTGATTGAAAACTTGGTGC--ACTTTTgtctt--aggggccacagtaaaacccctctcttcttctttttagtttgaaccaaggtatgaaaacaaatgcaggaactaggcagatagagatcaaaacatcaactttgtaagtgtcagcaggaatggaggacagagcacagat-atgtggtctctatctgatctcctaattctgTGAACTGAATGTATCCAGTTGAAACAGCTTCTTCAGGGCAGAGACCAGTACAGTAAGC------TTACTGCATGA--------AGAAACAGTGAATACCTG
i calJac3.chr8             I 1324 C 0
s canFam3.chr16             52059072 289 -  59632846 TCTCAAAGTGATTAGAAATTTGGTGTGGGgttggagcttcatgggccaaaaatcacacccatctcttcctcttctgagtttgaaccaagttatgaaagccaatgcaggagctaggcagatggagatcaaaacaccagctttataaatgtcagcaggagaaaaggacacagcttagataatgcggtcacaatccgatttccagatactCCAAATTGAATTCATCCCCTTAAAATGTCTCCTTTAGGGCAGACACTGCTATAGGAAGACA------ACTGTATGA--------GGAAGCAGTGAG------
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40384967 832 + 149736546 I

a score=319018.000000
s hg38.chr7_GL383534v2_alt      6917 105 +    119183 AGACA------AGGACAGCTGCTGTC-AGAGAG--AAAGGAAAGGGCTGGATCCATGCATTGGTCCTTCTAGACTTGGGGAGGAGTGAGTAAGCAGTGGAGTGAGAGAAGCCAG
s panTro4.chr7             143107163 105 + 161824586 AGACA------AGGACAGCTGCTGTC-AGAGAG--AAAGGAAAGGGCTGGATCCATGCATTGGTCCTTCTAGACTTGGGGAGGAGTGAGTAAGCGGTGGAGTGAGAGAAGCCAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138911213 105 + 157549271 AGACA------AGGACAGCTGCTGTC-AGAGAG--AAAGGAAAGGGCTGGATCCATGCAATGGTCCTTCTAGACTTGGGGAGGAGTGAGTAAGCGGTGGAGTGAGAGAAGCCAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93048364 101 + 110113093 AGACA------AGGACAGCTGCTGTC-AGAGAG--AAAGGAAAGGGCTGGATCCATGCACTGGTCCTTCTAGACTTGGGGAGGAGTCAGT----GGTGGAGTGAGAGAAGCCAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180947034 103 + 198365852 AGACA------AGGACAGCTGCTGTC-AGAGAGAAAAAGGAAGGGGCTGGATCCATGCATTGGTCCTTCTAGACTCGGGGAGGAGTAAGT----GGTGGAGTGAGAGAAGCCAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174692940 103 + 192294377 AGACA------AGGACAGCTGCTGTC-AGAGAGAAAAAGGAAGGGGCTGGATCCATGCATTGGTCCTTCTAGACTCGGGGAGGAGTAAGT----GGTGGAGTGAGAGAAGCCAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163358392 103 + 180432695 AGACA------AGGACAGCTGCtgtc-agagagaaaaaggaaggggcTGGATCCATGCATTGGTCCTTCTAGACTCAGGGAGGAGTAAGT----GGTGGAGTGAGAGAAGCCAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110390829 101 + 127223203 AGACA------AGGACAGCTGCTGTC-AGAGAG--AAAGGAAGGGGCTGGATCCATGCATTGGTCCTTCTAGACTTGGGGAGGAGTAAGT----GGTGGAGTGAGAGAAGCCAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23737093 105 - 128169293 AAGCA------AAGATAGCCGCTGTC-AGAGAG--AAAGGAAGGGGCTGGATCCATGCACCGGTCCTTCTAGACTTGGGGAGGAGTGAGTAAGTGGTGGAGTGAGAGAAGCCAG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40385799 102 + 149736546 AGACAAT----AGAGCAGTGGCTTTTAAGTGAG--CAGATAGATGGCTG------TGTTTTCATATACCCAGAGCAGGGGAGGGAGGAGCAGGAAGTGAAGAGAAAGGAGACAG
i mm10.chr6                I 832 I 463
s canFam3.chr16             52059361  57 -  59632846 ------TCCCCAGGACAGCCACATTC-AGATGG--AGAGGGAGAAG------------------------------------------------GGGAGGGAGGGAAAAGCCAG
i canFam3.chr16            C 0 C 0

a score=1148693.000000
s hg38.chr7_GL383534v2_alt      7022 334 +    119183 TGTTGCTACTGCTTTGTAATTCACCACCTGGAAACTTGAGAACAGGGAAGCATTTCACCCTAAGAGACACAATgggcacaaaagaatca--------accagaagaatatgggatgtgattagagagcaggatctcagggttttagatttccaaagtggaatagttctgggtgacattaggggccaggatgtggccatggaaatgggtggatgtggtgaatcagaggtgatgtcaagggctgagaggctggggtatGGTTTTATTCATTCATGCGGTCAGGATGTGATCCAGGGTGACACTGGACTTGGGATGCCAGGACATAGAAGAC------------AAAAAAAATT-AGA
s panTro4.chr7             143107268 334 + 161824586 TGTTGCTACTGCTTTGTAATTCACCACCTGGAAACTTGAGAACAGGGAAGCATTTCACCCTAAGAGACACAATgggcacaaaagaatca--------accagaagaatatgggatgtgattagagagcaggatctcagggttttagatttccaaagtggaatagttctgggtgacattaggggccaggatgtggccatggaaatgggtggatgtggtgaatcagaggtgatgtcaagggctgagaggctggggtatggttttaattattcatgcggTCAAGATGTGATCCAGGGTGACACTGGACTTGGGATGCCAGGACGTAGAAGAC------------AAAAAAAATT-AGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138911318 331 + 157549271 TATTGCTACTGCTTTGTAATTCACCACCTGGAAACTTGAGAACAGGGAA-CATTTCACCCTAAGAGACACAATgggcacaaaagaatca--------accagaagaatatgggatgtgatt--agagtaggatctcagggttttagatttccaaagtggaatagttctgggtgacattaggggccaggatgtggccatggaaatgggtggatgtggtgaatcagaggtgatgttaagggctgagaggctggggtatggttttcatcattcatgtggTCAGGATGTGATCTAGGATGACACTGGACTTGGGATGCCAGGACATAGAAGAC------------AAAAAAAATT-AGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93048465 335 + 110113093 TATTGCTACTGCTTTGTAATTCACCACCTGGAAACTTGAGAATAGGGAAGCATTTCACCCTAAGAGACATAATgggcacaaaagaatca--------accagaagaatatgagatgtgattagagagtaggatctcagggttttaaatttccaaagtgaaatagttctgggtgacattaggggccaggatgtggccatggaaatgggtggatgtggtgaatcagaggtgatgtcaaggcttgagaggctggggtaGGGTTTTAATTATTCTTGCGGTCAGGATGTGATCCAGGATGACACTGGACTTGGGATGCCAGGATGTAGAAGAC------------AAAAAAAATTAAGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180947137 346 + 198365852 TGTTGCTACTGTTTTGTAATTCACCACCTGGAAACTTGAGAACAGGGAAGCATTTCACCCTAAGAGACACAATgggcacaaaagaatca--------accagaagaatatgggatgtgattagagggtaggatctcagagttttagatttccaaagtgaaatagttctgggtgacattaggggccaggatgtggccatggaaatgggtggatgtggtgaattggaggtgatgtcaagggctgagaggctagggtatGGTTTTAATTATTCATGCGGTCAGGATGTGATCCAGGCTGACACTGGACTTGGGATGCCGGGACGCAGAAGACaaaaaaaaaaaaaaaaaaaaaT-AGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174693043 340 + 192294377 TGTTGCTACTGTTTTGTAATTCACCACCTGGAAACTTGAGAACAGGGAAGCATTTCACCCTAAGAGACACAATgggcacaaaagaatca--------accagaagaatatgggatgtgattagagggtaggatctcagagttttagatttccaaagtgaaatagttctgggtgacattaggggccaggatgtggccatggaaatgggtggatgtggtgaattggaggtgatgtcaagggctgagaggctagggtatggttttaattattcatgcggTCAGGATGTGATCCAGGCTGACACTGGACTTGGGATGCCAGGACGCAGAAGAC------AAAAAAAAAAAAAAAT-AGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163358495 346 + 180432695 TGTTGCTACTGTTTTGTAATTCACCACCTGGAAACTTGAGAACAGGGAAGCATTTCACCCTAAGAGACACAATGGGCACAAAAGAATCA--------ACCAGAAGAATATGGGATGTGATTAGAGGGTAGGATCTCAGAGTTTTAGATTTCCAAAGTGAAATAGTTCTGGGTGACATTAGGGGCCAGGATGTGGCCATGGAAATGGGTGGATGTGGTGAATTGGAGGTGATGTCAAGGGCTGAGGGGCTAGGGTATAGTTTTAATTATTCATGCGGTCAGGATGTGATCCAGGATGACAGTGAACTTGGGATGCCAGGAcgcagaagacaaaaaaaaaaaaaaaaaaaaat-aga
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110390930 341 + 127223203 TGTTGCTACTGTTTTGTAATTCACCACCTGGAAACTTGAGAACA-GGAAGCATTTCACCCTAAGAAACACAATgggcacaaaagaatca--------accagaagaatatgggatgtgattagagggtaggatcacagagttttagatttccaaagtgaaatagttctgggtgacattaggggccaggatgtggccgtggaaatgggtggatgtggtgaactggaggtgatgtcaagggctgagaggctagggtatggttttaattattcatgtggTCAGGATGTGATCCAGGATGACACTGGACTTGGGATGCCAGGATGCAGAAGAC----AAAAAAAAAAAAAAAATT-AGA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23737198 337 - 128169293 TATTGCTACTGTTTTGTAATTCACCACATGGAAACTTGAGAACAGGGAAGCATTTCACCCTGAGACACACAATGGACATAaaagaatca--------accgcaagagtatgggatgtgattagagagtaggatctcagaattttagatttccaaagtggaatagttctgggtgacattaggggccaggatgtggccatggaaatagatggatatggcgaattgcaggtgatgtcaagggctgagaggctagggtatggttttaattattcatgtggTCAGGATGTCATCCAGGATGACACTGGACTTGGGATGCCAGGACATAGAAGAC---------CAAAAAAAAAATT-AGA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52059418 319 -  59632846 -----TTACTCCTTTATAATTTACTGCATGAGAACCTGAGACCAAGGCAGTGGGTCACCCCAAGAGACCTGTTCAGTACAAAGGAAGCAGTCAAAAGAACAgaagaatatggggtgtggctacagagtaagacgtcaaggttttaggtttctaaggtggaatagttctgggtaacgagaaggaccaggatgtggccatggaaataggtggc--tggggacttagggatgacatcaagggttgagtggctagggtgttgttttaattactcctgtggacacta-----------aTGAGACTGGAC-TGGGGTGTCAGGAAGTAGAAGAC--------------AAAAATCT-A--
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40385901 463 + 149736546 I

a score=943575.000000
s hg38.chr7_GL383534v2_alt      7356 250 +    119183 GTGTGAGGGTGATGGGCTTTGAAGCAGAAGTGAGAAGCCTTGGGCTGGATTGTGAGCCTGGGCTAAACCATTCTGGCCTGTGTGTGGAATAAGATTCCAGAAGTGAGGTAGGTACTTGATGCAAC--TGGATTTCCTCAGTTTCATTTTGCATCACCATCTGTAAGCCAAAGATAAATTTATTACGG-ATGACC-CTATGTTCATTCA----------------CCCTCTTTTTGGA----CAAATGTAAATGGTGGTGGTTAGCCAATTTTAG-------------------
s panTro4.chr7             143107602 250 + 161824586 GTGTGAGGGTGATGGGCTTTGAAGCAGAAGTGAGAAGCCTTGGGCTGGATTGTGAGCCTGGGCTAAACCATTCTGGCCTGTGTGTGGAATAAGATTCCAGAAGTGAGATAGGTACTTGATGCAAC--TGGATTTCCTCAGTTTCATTTTGCATCACCATCCGTAAGCCAAAGATAAATTTATTACGG-ATGACC-CTATGTTCATTCA----------------CCCTCTTTTTGGA----CAAATGTAAATGGTGGTGGTTAGCCTATTTTAG-------------------
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138911649 250 + 157549271 GTGTGAGGGTAATGGGCTTTGAAGCAGAAGTGAGAAGCCTTGGGCTGGATTGTGAGCCTGGGCTAAATCATTCTGGCCTGTGTGTGGAATAAGATTCCAGAAGTGAGGTAGGGACTTGATGCAAC--TGGATTTCCTCAGTTTCATTTTGCATCACCATCTGTAAGCCAAAGATAAATTTATTACGG-ATGACC-CTATGTTCATTCA----------------CCCTCTTTTTGGA----CAAGTGTAAATGGTGATGGTTAGCCCATTTTAG-------------------
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93048800 250 + 110113093 GTGTGAAGGTGATGGGCTTTGAAGCAGAAGTGAGAAGCCTTGGGCTGGATTGTGAGCCTGGGCTAAACCATTCTGGCCTGTGTGTGGAATAAGATTCCAGAAGTGAGGTAGGTACTTGATGCAGC--TGGATTTCCTCAGTTTCATTTTGCATCACCATCTGTAAGCCAAAGATAAATTTATTATGG-ATGACC-CTATGTTCATTCA----------------CCCTCTTTTTGGA----CAAGTGTAAATGGTGGTGGTTAGCCCATTTTAG-------------------
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180947483 250 + 198365852 GTGTGAGGGTGATGGGCTTTGAAGCAGAAGTGAGAAGCCTTGGGCTGGATTGTGAGCCTGGGCTAAACCATTCTGTCCTGTGTGTGGAATAAGATTCCAGAAGTGAGGTAGGTACTTGATGCAAC--TGGATTTCCTCAGTTTCATTTTGCATCACCATCTGTAAGCCAAAGATGAATTTATTACAG-ATGACC-CTATGTTCATTCA----------------CCCTCCTTTTGGA----CAAGTGTAAATGGTGGTGGTTAGTCCATTTTAG-------------------
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174693383 250 + 192294377 GTGTGAGGGTGATGGGCTTTGAAGCAGAAGTGAGAAGCCTTGGGCTGGATTGTGAGCCTGGGCTAAACCATTCTGTCCTGTGTGTGGAATAAGATTCCAGAAGTGAGGTAGGTACTTGATGCAAC--TGGATTTCCTCAGTTTCATTTTGCATCACCATCTGTAAGCCAAAGATGAATTTATTACAG-ATGACC-CTATGTTCATTCA----------------CCCTCCTTTTGGA----CAAGTGTAAATGGTGGTGGTTAGTCCATTTTAG-------------------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163358841 250 + 180432695 gtgtaAGGGTGATGGGCTTTGAAGCAGAAGTGAGAAGCCTTGGGCTGGATTGTGAGCCTGGGCTAAACCATTCTGTCCTGTGTGTGGAATAAGATTCCAGAAGTGAGGTAGGTACTTGATGCAAT--TGGATTTCCTCAGTTTCATTTTGCATCACCATCTGTAAGCCAAAGATGAATTTATTACAG-ATGACC-CTATGTTCATTCA----------------CCCTCTTTTTGGA----CAAGTGTAAATGGTGGTGGTTAGTCCATTTTAG-------------------
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110391271 250 + 127223203 GTGTGAGGGTGATGGGATTTGAAGCAAAAGTGAGAAGCCTTGGGCTGGATTGTGAGCCTGGGCTAAACCATTCTGTCCTGTGTGTGGAATAAGATTCCAGAAGTGAGGTAGGTACTTGATGCAAC--TGGATTTCCTCAGTTTCATTTTGCATCAACATCTGTAAGCCAAAGATGAATTTATTACGG-ATGACC-CTGTGTTCATTCA----------------CCCTCTTTTTGGA----CAAGTGTAAATGGTGGTGGTTAGTCCATTTTAG-------------------
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23737535 250 - 128169293 GCGTGAGGATGATGGGCTTTGAAGCAGAAGTGAGAAGCCTCAGACTGGATTGTGAGCCTGGGGTAAACCATTCTGGCCTGCGTGTGGAATAAGATTCCAGAAGTGAGGTAAGTACTTGATGCAGC--TGGATTTCATCAGTTTCATTTTTCATCACCATCTGTAAGCCAAAGATAAATTTATTACTG-GTGACC-CTGTGTTCATTCA----------------TCCTCCTTTTGGA----CAAGTGTAAATGGTGGTTGTTAGTCCATGTTAG-------------------
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40386364 238 + 149736546 GTGTGAGAATGATGGGCTTTGAAGCATGA---AGAGGCCTCAGGCTGGATT-TGA--------------ATTCTGTCCTCTATATGGAGTCTGATACCAGCACTGAAGTAGGTGTTTGATGCAAC--T-GATTTCATTACTT---GTTTGTGT-GCCATCGATAAATTGAGGGTAAGTTTAGCATAG---GACCACTCTGCTCATTCATATTGA--------TTTCTGTTCTTTGGATAAGTAAGTGTAAACAGTAGTTGTCAATTCAGTTTGT-------------------
i mm10.chr6                I 463 I 35
s canFam3.chr16             52059737 266 -  59632846 GTCTGAGAATGATGGTCTTTGAAG--------------CCTTGGCTGGATGGCAAAGCTAGCCTAAACCATTCTGGGCTCCGTGTGGAATAGGATTCCAGAAGGGAAGAAGATATTTGATGCTTCGATGCATTTCAT--------TTTTGTGTCACCATCTGTAAACCAAAGATAAATTTATTATGGAATGATT-CTATGCTCATTCATACTGAttttttttttttttttttttGAA----AAAGTATAAGCAGTGGTGGTTAGTCTGCTTGGACTTTTCTGCTCTGTGATTG
i canFam3.chr16            C 0 C 0

a score=81412.000000
s hg38.chr7_GL383534v2_alt      7606 21 +    119183 GGGGAGCAATGGAGGCAGTAC
s panTro4.chr7             143107852 21 + 161824586 GGGGAGCAATGGAGGCAGTAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138911899 21 + 157549271 GGAGAGCAATGGAGGCAGTAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93049050 21 + 110113093 GGGGAGCAATGGAGGCAGTAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180947733 21 + 198365852 GGGGAGCAGTGGAGGCAGTAC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174693633 21 + 192294377 GGGGAGCAGTGGAGGCAGTAC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163359091 21 + 180432695 GGGGAGCAGTGGAGGCAGTAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110391521 21 + 127223203 GGGGAGCAGTGGAGGCAGTAC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23737785 21 - 128169293 GGGGAGCAGTGTAGGCAGTAC
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52060003 21 -  59632846 TGAGAGCAGTGGAGGCAGCAC
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40386602 35 + 149736546 I

a score=4198213.000000
s hg38.chr7_GL383534v2_alt      7627 1106 +    119183 TTGCTGAATTCATGGTTTTTAAGATGTAGCTTTAAGAGGAAAAGAAAGCTTGAGGATTCCATGCTCCAAACT----AGCATTCCATCCAGTGAGAGGAGATTATTAGTTCACT----TTCTAGCAGGTATAGGTAGACAAATAAATAACTTTTGCAGAGAGAAACTCCCAGAGT--GGAATTGTACATGCATAACAAAATTTTTCTCTCTCCACATTAAAAGGAGTGGCCTCAGACTCATCAAGCCTCTATCTCATACACGGGACCTACAGAGAGACCTCCCAATGAACCAGAGGAGACCCCTGTACAAAGGCCTTCTTTGTACAGGAGAATATTACGAAGGCTTGCGTCCTACTGGGCACAACCACAGGATGGTGAGCAATGTGGCGACTAAAGATTGGAGGGCCCTGGTCAGTTTAGAAGTG----CCCTAAAGTAGACCTCCAAAATCAGTTTTAGAGACTTAACTAGAGCAGGAGAAGCCTCTCAGGGATCACTGAATTCATCCTTCTGTGTGCCACCAGAGCAGGCCC-----AAGCAATGTGCCATCAATGGGCATAGCAG--------------------------TCTCTGTGCACAGTCTTTCTGTTAACGTGACTGCTTTTGGTAG-TGATGTTTTAGGCACAGAGATGCCA-----TTTTTACCT-----------CTATGTATAAGAAGC-ATGAAATAAATAAAATGAAGGCA--GAGTCAGCAGAAAGG-TTGAGAAGCTGAGCTG-------AGCAGCT-AGCAG------------------------------CTAGCCGTCCGTG-----------------------------GTGGGTG----------------------------------GTGAAATGTTAATGGAAGAAACTGACCTGTATCTAATGGATTCCCACAGCCCTTTCCCAAGAGGTGAGCCCGGAGGTCTGGAAAGATGTGCAGCTGTCCACCATTGAACTGTCCATCACAACACGGAATAATCAGCTTGACCCGACAGTAAGTGTGCTTTTTTATTAGAAAA--GCATTTGGTACCTAAG--AAAAGTGACAATAGCTATAGTCCTCTCCCACTAAT-----------------TCAGTTATT--------TTTATTTTTACCCTGTGGAGATAGAGAGGGCAGTGTCAGGAGAAAGAGGATGTGGTGTGCCTTTAAGGAATAACAGCAATGAGGAGAAGCTGCCACCTGCAGGAGTGGCATAAATGCTTCTGGGGCTCTGATTACATGTTCTGCTCAT
s panTro4.chr7             143107873 1108 + 161824586 TTCCTGAATTCATGGTTTTTAAGATGTAGCTTTAAGAGGAAAAGAAAGCTTGAGGATTCCATGCTCCAAACT----CGCATTCCATCCAGTGAGAGGAGATTATTAGTTCACT----TTCTAGCACGTATAGGTAGACAAATAAATAACTTTTGCAGAGAGAAACTCCCAGAGT--GGAATTGTACATGCATAACAAAATTTTTCTCTCTCCACATTAAAAGGAGTGGCCTCAGACTCATCAAGCCTCTATCTCATACACGGGACCTACAGAGAGACCTCCCAGTGAACCAGAGGAGACCCCTGTACAAAGGCCTTCTTTGTACAGGAGAGTATTACGGAGGCTTGCGTCCTACTGGGCACAACCACAGGATGGTGAGCAATGTGGCGACTAAAGATTGGAGGGCCCTGGTCAGTTTAGAAGTG----CCCTAAAGTAGACCTCCAAAATCAGTTTTAGAAACTTAACTAGAGCAGGAGAAGCCTCTCAGGGATCACTGAATTCATCCTTCTGTGTGCCACCAGAGCAGGCCC-----AAGCAATGTGCCATCAATGGGCATAGCAG--------------------------TCTCTGTGCACAGTCTTTCTGTTAATGTGACTGCTTTTGGTAG-TGATGTTTCAGGCACAGAGATGCCA-----TTTTTACCT-----------CTATGTATAAGAAGC-ATGAAATAAATAAAATGAAGGCAAAGAGTCAGCAGAAAGG-TTGAGAAGCTGAGCTG-------AGCAGCT-AGCAG------------------------------CTAGCCGTCCGTG-----------------------------GTGGGTG----------------------------------GTGAAATGTTAATGGAAGAAACTGACCTGTATCTAATGGATTCCCACAGCCCTTTCCCAAGAGGTGAGCCTGGAGGTCTGGAAAGATGTGCAGCTGTCCACCATTGAACTGTCCATCACAACACGGAATAATCAGCTTGACCCGACAGTAAGTGTGCTTTTTTATTAGAAAA--GCATTTGGTACCTAAG--AAAAGTGACAATAGCTATAGTCCTCTCCCACTAAT-----------------TCAGTTATT--------TTTGTTTTTACCCTGTGGAGACAGAGAGGGCAGTGTCAGGAGAAAGAGGATGTGGTGTGCCTTTAAGGAATAACAGCAATGAGGAGAAGCTGCCACCTGCAGGAGTGGCATAAATGCTTCTGGGGCTCTGATTACATGCTCTGCTCAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138911920 1108 + 157549271 TTGCTGAATTCATGGTTTCTAAGATGTAGCTTTAAGAGGAAAAGAAAGCTTGAGGATTCCATGCTCCAAACT----AGCATTCCATCCAGTGAGAGGAGATTATTAGTTCACT----TTCTAGCAGGTATAGGTAGACAAATAAATAACTTTTGCAGAGAGAAACTCCCAGAGT--GGAATTGTATATGCATAACAAAATTTTTCTCTCTCCACATTAAAAGGAGTGGCCTCAGACTCACCAAGCCTCTATCTCATACACGGGACCTACAGAGAGACCTCCCAGTGAACCAGAGGAGACCCCTGTACAGAGGCCTTCTTTGTACAGGAGAATATTACGAAGGCTTGCATCCTACTGGGCACAACCACAGGATGGTGAGCAATGTGGCGACTGAAGATTGGACGGCCCTGGTCAGTTTAGAAGTG----CCCTAAAATATACCTCCAAAATCAGTTTTAGAGACTTAACTAGAGCAGGAGAAGCCTTTCAGGGATCACTGAATTCATCCTTCTGTGTGCCACCAGAGCAGGCCC-----AAGCAATGTGCCATCAATGGGCATAGCAG--------------------------TCTCTGTGTACAGTCTTTCTGTTAATGTGACTGCTTTTGGTAG-TGATGTTTTAGGCACAGAGATGCCA-----TTTTTACCT-----------CTATGTATAAGAAGC-ATGAAATACATAAAATGAAGGCAAAGAGTCAGCAGAAAGG-TTGAGAAGCTGAGCCG-------AGCAGCT-AGCAG------------------------------CTAGCCGTCCGTG-----------------------------GTGGGTG----------------------------------GTGAAATGTTAATGGAAGAAACTGACCTGTATCTAATGGATTCCCACAGCCCTTTCCCAAGAGGTGAGCCCAGAGGTCTGGAAAGATGTGCAGCTGTCCACCATTGAACTGTCCATCACAACACGGAACAATCAGCTTGACCCGACAGTAAGTGTGCTTTTTTATTAGAAAA--GCATTTGGTACCTAAG--AAAAGTGACAATAGCTATAGTCCTCTCCCACTAAT-----------------TCAGTTATT--------TTTATTTTTACCCTGTGGAGATAGAGAGGGCAGAGTCAGGAGAAAGAGGATGTGGTGTGCCTTTAAGGAATAACAGCAATGAGGAGAAGGTGCCACCTGCAGGAGTGGCATAAATGCTTCTGGGGCTCTGATCACATGTTCTGCTCAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93049071 1108 + 110113093 TTGCTGACTTCATCGTTTTTAAGATGTAGCTTTAAGAGGAAAAGAAAGCTTGAGGATTCCATGCTCCAAACT----AGCATTCCGTCCAGTAAGAGGAGATTATTAGTTCACT----TTCTAGCAGGTATAGGTAGACAAATAAATAACTTTTGCAGAGAGAAACTCCCAGAGT--GGAATTATATATGCATAACAAAATTTTTCTCTCTCCACATTAAAAGGAGTGGCCTCAGACTCATCAAGCCTCTATCTCATACACGGGACCTACAGAGAGACCTCCCAGTGAACCAGAGGAGACCCCTGTACAAAGGCCTTCTTTGTACAGGAGAATATTACGAAGGCTTGCATCCTACTGGGCACAACCACAGGATGGTGAGCAATGTGGCGACTGAAGATTGGAGGGCCCTGGGCAGTTCAGAAGTGCCCTCCCTAAAGTAGACCTCCAAAATCAGTTTTAGAGACTTAACTAGAGCAGGAGAAGCCTTTCAGGGATCACTGAATTCATCCTTCTGTGTGCCACCAGAGCAGGCCC-----AAGCAATGTACCATCAACGGGCATAGCAG--------------------------TCTC--TGCACAGTCTTTCTGTTAATGTGACTGCTTTTGGTAG-TGATGTTTTAGGCACAGAGATGGCA-----TTTTTACCT-----------CTA--TATAAGAAGC-ACGAAATAAATAAAATGAAGGCAAAGAGTCAGCAGAAAGG-TTGAGAAGCTGAGCTG-------AGCAGCT-AGCAG------------------------------CTAGCCGTCTGTG-----------------------------GTGGGTG----------------------------------GTGAAATGTTAATGGAATAAACTGACCTGTATCTAATGGATTCCCACAGCCCTATCCCAAGAGGTGAGCCCAGAGGTCTGGAAAGATGTGCAGCTGTCCACCATTGAACTGTCCATCACAACACGGAACAATCAGCTTGACCCGACAGTAAGTGTGCTTTTTTATTAGAAAA--GCATTTGGTACCTAAG--AAAAGTGACAATAGCTATAGTCCTCTCCCACTAAT-----------------TCAGTTATT--------TTTATTTTTACCCTGTGAAGATAGAGAGGGCAGGGAGAGGAGAAAGAGGATGTGGTGTGCCTTTAAGGAATAACAGCAATGAGGAGAAGCTGTCACCTGCAGGAGTGGCATAAATGCTTCTGGGGCTCTGATCACATGTTCTGCTCAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180947754 1108 + 198365852 TTGCTGAATTCATGGTTTTTAAGATCTAGCTTTAAGAGGAAAAGAAAGCTTGAGGATTCCATGCTCCAAATT----AGCATTCCATCCAGTGAGAGGAGATTATTAATTCACT----TTCTAGCAGGTATAAAGAGACAAATAAATAACCTTTACTGAGAGAAACTCCCAGAGT--GGAATTGTATATGCCTAAGAAAA-TTTTCTCTCTCCACATTAAAAGGAGTGGCCTCAGACTCATCAAGCCTCTATCTCATACACGGGACCTACAGAGAGACCTCCCACTGAACCAGAGGAGACCCCTGTACAAAGACCTTCTTTGTACAGGAGAATATTACGAAGGCTTGCATCCTACTGGGCACAACCACAGGATGGTGAGCAATGTGGCGACTGAGGATTGGAGGGCCCTGGTCAGTTTAGGAGTG----CCCTAAAGTAGACCTCCAAAATCAGTTTGAGAGACTTAACTAGAGCAGGAGAAGCCTTTCAGGAATCACTGAATTGATCCTTCTGTGTGCCATCAGAGCATGCCC-----AAGCAATGTGCCATCAATGGGCATAGCAG--------------------------TCTCTGTGCACAATCTTTCTGTTAATGTGACTGCTTTTGGTAG-TGATGTTTTAGGCACAGAGATGCCA-----TTTTTACCT-----------CTATGTATAAGAAGC-ATGAAATAAATAAAATGAAGGCAAAGAGTCAGCAGAAAGGCTTGAGAAACTGAGCTG-------AGCAGCT-AGCAG------------------------------CTAGCCGTCCGTG-----------------------------GTGGGTG----------------------------------GTTAAATGTTAATGGAAGAAACTGACCTGTATCTAATGGATTCCCACAGCCCTTTCCCAAGAGGTGAGCCCAGAGGTCTGGAAAGATGTGCAGCTGTCCACCATTGAACTGTCCATCACAACACGGAACAATCAGCTTGACCCGACAGTAAGTGTGCTTTTTTATTAGAAAA--GCATTTGGTACCTAAG--AAAAGTGACAACAGCTATAGAATGCTCCCACTAAT-----------------TCAGTTATT--------TTTATTTTTACCCTGTGGAGATAGAGAGGGCAGGGTCAGGGGAAAGAGGATGCGGTGTGCCTTTAAGGAATAACAGCAATGAGGAGAAGCTGCCACCTGCAGGAGTGGCATAAATGCTTCTGGGGCTCTGATCACATGTTCTGCTCAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174693654 1108 + 192294377 TTGCTGAATTCATGGTTTTTAAGATCTAGCTTTAAGAGGAAAAGAAAGCTTGAGGATTCCATGCTCCAAATT----AGCATTCCATCCAGTGAGAGGAGATTATTAATTCACT----TTCTAGCAGGTATAAAGAGACAAATAAATAACCTTTACTGAGAGAAACTCCCAGAGT--GGAATTGTATATGCATAAGAAAA-TTTTCTCTCTCCACATTAAAAGGAGTGGCCTCAGACTCATCAAGCCTCTATCTCATACACGGGACCTACAGAGAGACCTCCCAGTGAACCAGAGGAGACCCCTGTACAAAGACCTTCTTTGTACAGGAGAATATTACGAAGGCTTGCATCCTACTGGGCACAACCACAGGATGGTGAGCAATGTGGCGACTGAGGATTGGAGGGCCCTGGTCAGTTTAGGAGTG----CCCTAAAGTAGACCTCCAAAATCAGTTTGAGAGACTTAACTAGAGCAGGAGAAGCCTTTCAGGAATCACTGAATTGATCCTTCTGTGTGCCATCAGAGCATGCCC-----AAGCAATGTGCCATCAATGGGCATAGCAG--------------------------TCTCTGTGCACAATCTTTCTGTTAATGTGACTGCTTTTGGTAG-TGATGTTTTAGGCACAGAGATGCCA-----TTTTTACCT-----------CTATGTATAAGAAGC-ATGAAATAAATAAAATGAAGGCAAAGAGTCAGCAGAAAGGCTTGAGAAACTGAGCTG-------AGCAGCT-AGCAG------------------------------CTAGCCGTCCGTG-----------------------------GTGGGTG----------------------------------GTTAAATGTTAATGGAAGAAACTGACCTGTATCTAATGGATTCCCACAGCCCTTTCCCAAGAGGTGAGCCCAGAGGTCTGGAAAGATGTGCAGCTGTCCACCATTGAACTGTCCATCACAACACGGAACAATCAGCTTGACCCGACAGTAAGTGTGCTTTTTTATTAGAAAA--GCATTTGGTACCTAAG--AAAAGTGACAACAGCTATAGAATGCTCCCACTAAT-----------------TCAGTTATT--------TTTATTTTTACCCTGTGGAGATAGAGAGGGCAGGGTCAGGGGAAAGAGGATGCGGTGTGCCTTTAAGGAATAACAGCAATGAGGAGAAGCTGCCACCTGCAGGAGTGGCATAAATGCTTCTGGGGCTCTGATCACATGTTCTGCTCAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163359112 1108 + 180432695 TTGCTGAATTCATGGTTTTTAAGATCTAGctttaagaggaaaagaaagcttGAGGATTCCATGCTCCAAATT----AGCATTCCATCCAGTGAGAGGAGATTATTAATTCACT----TTCTAGCAGGTATAAAGAGACAAATAAATAACCTTTACTGAGAGAAACTCCCAGAGT--GGAATTGTATATGCATAAGAAAA-TTTTCTCTCTCCACATTAAAAGGAGTGGCCTCAGACTCATCAAGCCTCTATCTCATACACGGGACCTACAGAGAGACCTCCCAGTGAACCAGAGGAGACCCCTGTACAAAGACCTTCTTTGTACAGGAGAATATTACGAAGGCTTGCATCCTACTGGGCACAACCACAGGATGGTGAGCAATGTGGCGACTGAGGATTGGAGGGCCCTGGTCAGTTTAGGAGTG----CCCTAAAGTAGACCTCCAAAATCAGTTTGAGAGACTTAACTAGAGCAGGAGAAGCCTTTCAGGAATCACTGAATTGATCCTTCTGTGTGCCACCAGAGCATGCCC-----AAGCAATGTGCCATCAATGGGCATAGCAG--------------------------TCTCTGTGCACAATCTTTCTGTTAATGTGACTGCTTTTGGTAG-TGATGTTTTAGGCACAGAGATGCCA-----TTTTTACCT-----------CTATGTATAAGAagc-atgaaataaataaaatgaaggcaaagaGTCAGCAGAAAGGCTTGAGAAACTGAGCTG-------AGCAGCT-AGCAG------------------------------CTAGCCGTCCGTG-----------------------------GTGGGTG----------------------------------GTTAAATGTTAATGGAAGAAACTGACCTGTATCTAATGGATTCCCACAGCCCTTTCCCAAGAGGTGAGCCCAGAGGTCTGGAAAGATGTGCAGCTGTCCACCGTTGAACTGTCCATCACAACACGGAATAATCAGCTTGACCCGACAGTAAGTGTGcttttttattagaaaa--gcatTTGGTACCTAAG--AAAAGTGACAACAGCTATAGAATGCTCCCActaat-----------------tcagttatt--------tttatttttaccctgTGGAGATAGAGAGGGCAGGGTCAGGGGAAAGAGGATGTGGTGTGCCTTTAAGGAATAACAGCAATGAGGAGAAGCTGCCACCTGCAGCAGTGGCATAAATGCTTCTGGGGCTCTGATCACATGTTCTGCTCAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110391542 1112 + 127223203 TTGCTGAATTCATGGTTTTTAAGATCTAGCTTTAAGAGGAAAAGAATGCTTGAGGATTCCATGCTCCAAATT----AGCATTCCATCTAGTGA---GAGATTATTAATTCACT----TTCTAGCAGGTATAAAGAGACAAATAAATAACCTTTACTGAGAGAAACTCCCAGAGT--GGAATTGTATATGCATAAGAAAA-TTTTCTCTCTCCACATTAAAAGGAGTGGCCTCAGACTCATCAAGCCTCTATCTCATACACGGGACCTACAGAGAGACCTCCCAGCGAACCAGAGGAGACCCCTGTACAAAGACCTTCTTTGTACAGGAGAATATTACGAAGGCTTGCATCCTACTGGGCACAACCACAGGATGGTGAGCAATGTGGCAACTGAGGATTGGAGGGCCCTGGTCAGTTTAGGAGTG----CCCTAAAGTAGACCTCCAAAATCAGTTTTAGGGACTTAACTAGAGCAGGAGAAGCCTTTCAGGAATCACTGAATTGATCCTTCTGTGTGCCACCAGAGCATGCCC-----AAGCAATGTGCCATCAGTGGGCATAGCAG--------------------------TCTCTGTGCACAATCTTTCTGTTAATGTGACTGCTTTTGGTAG-TGATGTTTTAGGCACAGAGATGCCA-----TTTTTACCT-----------CTATGTATAAGAAGC-ATGAAATAAATAAAATGAAGGCAAAGAGTCAGCAGAAAGGCTTGAGAAACTGagctgagcagctagcagct-agcag------------------------------ctagcCATCTGTG-----------------------------GTGGGTG----------------------------------GTTAAATGTTAATGGAAGAAACTGACCTGTATCTAATGGATTCCCACAGCCCTTTCCCAAGAGGTGAGCCCAGAGGTCTGGAAAGATGTGCAGCTGTCCACCATTGAACTGTCCATCACAACACGGAACAATCAGCTTGACCTGACAGTAAGTGTGCTTTTTTATTAGAAAA--GCATTTGGTACCTAAG--AAAAGTGACAACAGCTATAGAATGCTCCCACTAAT-----------------TCAGTTATT--------TTTATTTTTACCCTGTGGAGATAGAGAGGGCAGGGTCAGGGGAAAGAGGATGTGGTGTGCCTTTAAGGAATAACAGCAATGAGGAGAAGCTGCCACCTGCAGGAGTGGCATAAATGCTTCTGGGGCTCTGATCACATGTTCTGCTCAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23737806 1097 - 128169293 TTGCTGAATTCATGGTTTTTAAGATCTAGCTTTAAGAGGAAAAGAAAACTTAAGGATTCCATGCTCCAAATTAGAGAGTATTCCATCCAGGGAAAGGAGATTATTAGTTCGCT----TTCTAGCACGTATAGGTAGAA----AAATAACCTTTGCAGAGAGAAACTCCCAGAGT--GGAACTGTAGATGCATGACAAAATTTTTCTCTTTCAACATTAAAAGGAGTGGCCTCAGACTCATCAAGCCTCTATCTCGTACACGGGACCTACAGAGAGACCTCCCAGTGAACCAGAGGAGACACCTGTACAAAGGCCTTCTTTGTACAGGAGAATATTACGAAGGCTTGCATCCTTCTGGGCACAACCACAGGATGGTGAGCAATGTGGCGACTGAAGATTGGAGGGCCCTGGTCAGTTTAGGAGTG----CCCTACAGTAGATCTCCAAAATCAGGTTTAGAGACTTAACTAGAGCAGGAGAAGCCTTCCAGGGATCGTTGAATTCATCCTTCTGTGTGCCACCAGAGCAGGCCC-----AAGTAGTGTCCCATCAATGGGCATAGCAG--------------------------TCTCAATGCACAGTCTTTCTGTTCATGTGACTGCTTTTGGTAG-TGATGTTTTAGGCACAGAGGTGCCA-----TTTTTACCT-----------CTATGTATAAGAGGC-ATGAAACAAATA-----AAGGCGAAGAGTCAGCAGAAAGGCTTGAGAAGCTGAGCTG-------AGCAGCT-AGCAA------------------------------CTAGCCGTCTGTG-----------------------------GTGGGTG----------------------------------GTGAAATGTTAATGGAAGAAACTGACCTGTATCTAATGGATTCCCACAGCCCTTTCCCAAGAGGTGAGCCCAGAGGTCTGGAAAGATGTGCAGCTGTCCACAATTGAACTGTCCATCACAACACGGAACAATCAGCTTGACCTGACGGTAAGTGTGCTTTTTTATTAGAAAA--GCATTTGGTAACTAGG--AAAAGTGACAATAGCTATAGTCCTCTCCCACTAAT-----------------TCCGttattttattttatttttttttaCCCTGTGGAGATAG------------CAGGAGAA--AGGCCATGGTGTGCTTTTAGGGAATAACAGCAATG-GGAGAAGCTACCACCTGTGGGAGTGGCATAAATGCTTCTGGGGCTGTGATCACATATTCTGCTCAT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40386637 1134 + 149736546 TCACTATGTTCATGGTTTTTAAGGT-------------------AAGGTTTGAAGTCGTCATATTCCCAAGTGAGGAGAATTCTGCTCATTGAA--GAGACAATTAAATTATTAGAATTC-------------------------TGACCTTTGCAGAGCAAAGCCCCCTGTGTTAGGAATTATGTGTACATGATGAAAGCTGTTTTCTTCTTCATTAACAGGAATGGCCTCAGACTCATCAAGCCTCCATCTCTTACACGGGACCTAGAGAGAGACCTCCCATTGAGCCTGAAGAGACTCCT---CCCAGGCCGTCTCTGTATAGGAGAATATTACGCAGGCTTGCCTCATTCTGGGCACAGCCACAGGATGGTGAGCAATGTGGTGACT--AGATTCCA-AGCCCTGTTCAGCTTAGAAGTG----GCCTGGAGCAGACTCCCAGAATCAGT------------ACTAGATAAG--------TTCCTGG------TGAATTCAGACTCCTGGGTGCTGTCAGGACAGGCTT--------CAGTGTCTTGTGACTAAGCACCACCGT----------------TCCTCGTCCTCTTTGTCACTGACATCTGTGCTAGTGAG-CTGCTTTCACTTGAGGACGCTTTAGGCATAGAGAGAGAACCTGGTATTTATCC-----------CTGCTTTACAGAAAA-ATGAAATAAAGA----------ATAGAGTTGGACAAAGGGCTGGGGAAGCTGA-CTA-----CCAGCAGCTCAGTAGTctccctccctctctctaccccccccccccccccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagggagcgggcagggacagagagagaAGTGTCAGTAGAA-ACACTGACCCATGTCTGATGGATTCCCACAGCCTCCTCCCGAGAGGTAAGCCCTGAGGTCTGGAAAGATGTACAACTGTCCACCATTGAACTGTCCATCACAACCCGAAACACCCAACTTGACCTGATGGTAAGTGCACTCAGTTTTTAAAAAAATGAATTTGGTGTCTGGGGAAAAAGTGACAGGTGCTTT-----TCTTGCACTGAT-----------------TCAG-TATT--------TTTCTGTTTACTCTGTGGGCATAGAGATGAAAGGCTCAAGTAGAGGGAGGGGTGGTGTGCCTTTGAGGAACAATTGCACTGGGAAGTGGTAGCTGAGTGCATTGG-GGCACAGGAGCTCACGGATCTCTGAACACACATTTTGTTCAT
i mm10.chr6                I 35 I 38
s canFam3.chr16             52060024 1125 -  59632846 TCACCGAGTTCATGGTTTTCAAGATCAGCCTTCAGTAGAAAAAGAAAGCTTGAGGATCCCATGTTCCAAAGC----AGAGAT---------------AAATTATTAATTTGCT----TTCAGGCAGGTGTAGGTAGAT-------TAACCTTTGC--AGAGACCCTCCTAGAGTTTGGACATGGGTGTGCATGACAAGG-TTTTCTCTCTTCACGTTAAAAGGAGTGGCCTCAGACACATCAAGCCTCAATCTCGTACATGGGACCTACAGAGAGACCTCCCAGTGGAGCAGAAGAGACCCCT---CCACGGCCATCTTTGTACAGGAGAATATTACGAAGGCTCGCATCGTACTGGGCACAGCCGCAGGATGGTGAGCCACATTCT-------GGTTGCAGAGCCCTGGTCAGTTCGGGA-TG----TCCGAAAGCAGACCCCCA-AATCAGTGTGAGACATG----TGGTACAGGAGAGGCCTTTCAAGAATCATTGAATTT-TCCTTCTGTATGCCA-CAGAGTGGGACCCAAACCAACACTGTGCCATGAATGGAAATAGCCTGGGTCATTGGTGACAAACCATGGCTCCCTCTGTCACTGACCTTTATGTTACTGTGGCTGCTTT-AATAG---ATGTTTTGTGTATAGATGTTCCA-----TTTGAGCCTGGCTCTTCATCCTGTGTGTAAGAAACTATGAAATAAATAAAACTGAGGTGGAGAATCAGGGGGTAGGTTTGAGTGGCCAAGCCA-------AGCAGCC-GGCAG------------------------------TTCGCCATTGGTG----------------------------GGAGAGTG----------------------------------GTGAGATGTTAGCAGAAGAAATTGACCTAAATCTAATGCCCCCACACAGCCCTTTCACAAGAGGTGAGCCCCAAGGTCTGGAAGGAAGTGCAGCTGTCCACCATTGAACTGTCCATCACAACGCGGAACAGTCAGCTTGACCTGACGGTAAGTGTGCCATTTTACTAGCAAA--ACATTTGGTATCTGGG--AAAAGTGACAAAGACTACATGGC-CTTCCGCTAATCGGGTATTTTTTTTTAATCGGGTATTT-------TTTATTTTTACCCTTTTGGGGGAGAGAGGAAAAGATTGGGGAAAAGAGGATGTAGTGTGGTTTTAAGGAATAATAGCAATGAGAAGAAACAGCAGAGTGAAGCAGTAGCTTCAAGATTTGCAGGG-TCTGAGACAGTATTCTGGGCGC
i canFam3.chr16            C 0 C 0

a score=947099.000000
s hg38.chr7_GL383534v2_alt      8733 290 +    119183 TGCTTAATTGGCATTCAGAGAACTTAGGGCAAGAGGGCTTTAGAAATGAAAATTAG--CTATTCCCATTTGTCAC-TGGA--AAAAAATTGTGGAACTTTTAGTTGAGTAAATATCCACGATTTTTGTGACTGTACTAAATATGTCAAATTAGATCCTCAGGAGAAAAATACCCACACACAtacatctgtatctatatctacatattatt-tatTTAG---GCCCAATCTATAGGTAtgcactatcccatacggtagctattagccacatgtggctagtt--------------------------------aaattta--------------------aattaattagaa
s panTro4.chr7             143108981 290 + 161824586 TGCTTAATTGGCATTCAGAGAACTTAGGGCAAGAGGGCTTTAGAAATGAAAATTAG--CTATTCCCATTTGTCAC-TGGA--AAAAAATTGTGGAACTTTTACTTGAGTAAATATCCACGATTTTTGTGACTATACTAAATATATCAAATTAGATCCTCAGGAGAAAAATACCCACACACATACATCTGTATCTATATCTACATATGATT-TATTTAG---GCCCAATCTATAGGTAtgcactatcccatacggtagctattagccacatgtggctagtt--------------------------------aaattta--------------------aattaattagaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138913028 290 + 157549271 TGCTTAATTGGCATTCAGAGAACTTAGGGCAAGAGGGCTTTAGAAATGAAAATTAG--CTATTCCCATTTGTCAC-TGGA--AAAAAACTGTGGAACTTTTACTTGAGTAAATATCCACGATTTTTGTGACTATACTAAATATGTCAAATTAGATCCTCAGGAGAAAAATACCCACACACACGCATCTGTATCTACATCTACATATGATT-TATTTAG---GCCCAATCTATAGGTAtgcactatcccatatggtagctattagccacatgtggctagtt--------------------------------aaattta--------------------aattaattagaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93050179 290 + 110113093 TGCTTAATTGGCATTCAGAGAACTTAGGGCAAGAGAGCTTTAGAAATGAAAATTAG--CTATTCCCATTTGTCAC-TGGA--AAAAAATTGTGGAACTTTTACTTGAGTAAATATCCACGGTTTTTGCGACTACACTAAATATGTCAAATTAGATCCTCAGGAGAAAAATACCCACACACATACATCTGTATCTATATCTACATATGATT-TATTTAG---GCCCAATCTATAGGTAtgcactattccatatggtagctattagccacatgtggctagtt--------------------------------aaattta--------------------gattaattagaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180948862 288 + 198365852 TGCTTAATTGGCATTCAGAGAACTTAGGGCAAGAGGGCTTTAGAAATGCAAATTAA--CTATTCCCATTTGTCAC-TGGA--AAAAAATTGTGGAATTTTTACTTGAGTAAATATCCACGATTTTCGTGAC--TACTAAATATGTCAAATTAGATCCTCAGGAGAAAAATACCCACACACATACATCTGTATCTATATCTACATGTGATT-TATTTAG---GCCCAATCTATAGGTAtgcactatcccatatggtagctattagccacatgtggttagtt--------------------------------aaattta--------------------aattaattagaa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174694762 288 + 192294377 TGCTTAATTGGCATTCAGAGAACTTAGGGCAAGAGGGCTTTAGAAATGCAAATTAA--CTATTCCCATTTGTCAC-TGGA--AAAAAATTGTGGAATTTTTACTTGAGTAAATATCCACGATTTTCGTGAC--TACTAAATATGTCAAATTAGATCCTCAGGAGAAAAATACCCACACACATACATCTGTATCTATATCTACATGTGATT-TATTTAG---GCCCAATCTATAGGTAtgcactatcccatatggtagctattagccacatgtggttagtt--------------------------------aaattta--------------------aattaattagaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163360220 290 + 180432695 TGCTTAATTGGCATTCAGAGAACTTAGGGCAAGAGggctttagaaatgcaaattaa--ctaTTCCCATTTGTCAC-TGGa--aaaaaaTTGTGGAATTTTTACTTGAGTAAATATCCACAATTTTTGTGACTGTACTAAATATGTCAAATTAGATCCTCAGGAGAAAAATACCCACACACGtacatctgtatctatatctacatgTGATT-TATTTAG---GCCCAATCTATAGGTATGCACTATCCCATATGGTAGctattagccacatgtggttagtt--------------------------------aaattta--------------------aattaattagaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110392654 291 + 127223203 TGCTTAATTGGCATTTAGAGAACCTAGGGCAAGAGGGCTTTAGAAATGCAAATTAA--CTATTCCCATTTGTCACGGGGA--AAAAAATTGTGAAATTTTTACTTGAGTAAATATCCACAATTTTTGTGACTGTACTAAATATGTCAAATTAGATCCTCAGGAGAAAAATACCCACACACATACATCTGTATCTATATCTACATGTGATT-TATTTAG---GCCCAATCTATAGGTAtgcactatcccatatggtagctattagccacatgtggttagtt--------------------------------aaattta--------------------aattaattagaa
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23738903 289 - 128169293 TGCTTAATTGGTTTTCAGAGAACTTAGGGTAAGAGGGCTTTAAAAATGAAAATTAA--CTATGCCCATTTGTCAC-TGGA--AAAAATCTGTGGAGCTTTTACTTGAGTAAATAGCTATTATTTTTGTGACTATATTAATTATGTCAACTTAGATCCTCAGAAGAAAAACAGCCACACACATACATCTGTATCTATATCTACATATGATTCTATTTAG---GTCCAATCTGTAGGTAtgcactatcccatatggtagctgttagccaca--tggccagtt--------------------------------acattta--------------------aattaattaaaa
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52061149 310 -  59632846 TGCTTAGTAGCCACCAAG----CTTTCAGC-------CTTTAGAAATGGAAAGTCAGCCTGCTCCCTTTTGTCTC-TGGAATAAAAAATTGAAGAACTTTTACTTGAGCGAGTACCCATTATTCTTGTGACTATATTAAGTATGAGGATTTAGGTCCCCAGAAGAAAAA---------------------ATATATATATACACA------TATATAGACAGTCTACTCTGTTGACATGCACTGTCCAGTACGGTAGCTGCTAG--ACCCGTGGCTATTTGTTtttattgtatttatttatttttatttttaaaatttatttatttttatttatgtatttatttattaaaa
i canFam3.chr16            C 0 I 107
e mm10.chr6                 40387771  38 + 149736546 I

a score=2293395.000000
s hg38.chr7_GL383534v2_alt      9023 705 +    119183 ttaaataaaattcaaaacttagttcctaagtcac-------------------actcac-------------cacatttcaagtgctcaacagccatatgtagctagtagccatcatactggaaagcacaggtatacagcctgtccgtcagtgcagaaggttctgttgggtggtgctACTATAGACAACACACCCAAAAG--TATTGAAATAAAGCAGGCATTGGcaaactggtctgccacctgtttttatata----gcccagaagccaaga----atcttctaattttaaatga-tgcaaagaaaatcaa---aagaataatttttg-tgaacagaaaaatacgtaaagttcaagtttcagtatccataaa-------taaagttttattggagcacagccat-attcattcacaaatatattgtctgtggctgcctttgtgctacagggg-agagctgagtagttgtgacagattgtatggccc-aaagcctaaaatgtttattatctggtcacttacagaa-----aaagtttactga-cccTAGTATA-GAGAAAACCTTGGTAATTTATATCAATGAGAATGCCAATAGGAAAGTAATTGTTAACTGTGGACTAA---TTACATTCAGCTTGTATGCAAAT-----TAGTCTGTTCACAGTTGTCTAGGCCAGTCTGAAAATTAGCAGATGGAGTTG---------------GAATGT--------CGTGAAAAGTTTGATTCCAATATTAATAGAGTGAT-AAGTTTGATTCTAATATTAATGTTCAGAGTATT
s panTro4.chr7             143109271 705 + 161824586 ttaaataaaattcaaaacttagttcctaagtcac-------------------actcac-------------cacatttcaagtgctcaacagccatatgtagctagtagccaccatactggaaagcacaggtatacagcctgtccgtcagtgcagaaggttctgttgggtggtgctACTATAGACAATACACCCAAAAG--TATTGAAATAAAGCAGGCATTGGcaaactggtctgccacctgtttttgtata----gcccagaagccaaga----atcttctaattttaaatga-tgcaaagaaaatcaa---aagaataatttttg-tgaacagaaaaatatgtaaagttcaagtttcagtatccataaa-------taaagttttattggagcacagccat-attcattcacaaatatattgtctgtggctgcctttgtgctacagggg-agagctgagtagttgtgacagattgtatggccc-aaagcctaaaatgtttattatctggtcacttacagaa-----aaagtttactga-cccTAGTATA-GAGAAAACCTTGGTAATTTATATCAATGAGAATGCCAATAGGAAAGTAATTGTTAACTGTGGACTAA---TTACATTCAGCTTGTATGCAAAT-----TAGTCTGTTCACAGTTGTCTAGGCCAGTCTGAAAATTAGCAGATGGAGTTG---------------GAATGT--------CGTGAAAAGTTTGATTCCAATATTAATAGAGTGAT-AAGTTTCATTCTAATATTAATGTTCAGAGTATT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138913318 703 + 157549271 ttaaataaaattcaaaacttagttcctaagtcac-------------------actcac-------------cacatttcaagtgctcaacagccatatgtggctagtagccaccatattggaaagcacaggtatacagcctgtccgtcagtgcagaaggttctgctgggtggtgctACTATAGACAATACACCCAAAAG--TATTGAAATAAAGCAGGCATTGGcaaactggtctgccacctgtttttgtata----gcccagaagccaaga----atcttctaattttaaatga-tgcaaagaaaatc-----aagaataatttttg-tgaacagaaaaatatgtaaaattcaagtttcagtatccataaa-------taaagttttattggagcacagccataattcatttacaaatatattgtctgtggctgccgttgtgctacagggg-agagctgagtagttgtgacagattgtatggccc-aaagcctaaaatgtttattatctggtcacttacagaa-----aaagtttactga-cccTAGTATG-GAGAAAACCTTGGTAATTTATATCAATGAGAATGCCAATAGGAAAGTAATTGTTAACTGGGGACTAA---TTACATTCAGCTTGTATGCAAAT-----TAGTCTGTTCACAGTTGTCTAGGCCAGTCTGAAAATTAGTAGATGGAGTTG---------------GAATGT--------CATGAAAAGTTTGATTCCAATATTAATAGAGTGAT-AAGTTTGA-TCTAATATTAATATTCAGAGTATT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93050469 701 + 110113093 ttaaataaaattcaaaacttagttcctaagtcac-------------------actcac-------------cacatgtcaagtgttcaacagccatatg--gctagtagccaccatattggaaagcacaggtatacagcctgtccgtcagtgcagaaggttctgttgggtggtgctACTATAGACGATACACCCAGAAG--TATTGAAATAAAGCAGGCATTGGcaaactggtctgccacctgtttttgtata----gcccagaagccaaga----atcttctaattttaaatga-tacaaagaaaatcaa---aagaataatttttg-tgaacagaaaaatatgtaaaattcaaatttcagtatccataaa-------taaagttttattggagcacagccat-attcattcacaaatatattgtctgtggctgcctttgtgctacagggg-agagctgagtagttgtgacagattgtatggccc-aaagcctaaaatgtttattatctggtcacttacagaa-----aaagtttactga-cccTAGTATA-GAGAAAACCTTGGTAATTTATATCAATGAGAATGCCAATAGGAAAGTAATTGTTAACTGTGGACTAA---TTACATTCAGCTTGTATGCAAAT-----TAGTCTGTT--CAGTTGTCTAGGCCAGTCTGAAAATTAGCAGAAGGAGTTG---------------GAATGT--------CGTGAAAAGTTTGATTCCAATATTAATAGAGTGAT-AAGTTTGATTCTAATATTAATATTCAGAGTACT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180949150 691 + 198365852 ttaaataaaatggaaaacttagttcctaagtcac-------------------actcac-------------cacatttcaagtgcccaacagccatatgtggctagtagccaccatattggaaatcacaggtatacagcctgtctgtcagtgcagaaggttctgttggGTGGTCCTGCTGTAGAAAATACATCCGAAAG--TATTGAAATAAAGCAGGCATTGGcaaactggtctgccacctg-ttttgtata----gcccagaagccaaga----atcttctaattttaaatga-tacaaagaaaatcaaaagaagaataatttttg-tgaacagaaaaatatgtaaaattcaagtttcagtatccataaa-------taaagttttattggagcacagccat-attcattcacaaatacattgtctgtggctgcctttgtgctatagggg-agagctgagtagttgtgacagattgtatggccc-aaagcctaaaatgtttattatctggtcacttacagaa-----aaagtttactga-cccTGGTATA-GAGAAAACCTTGGTAAT--------------ATACCAATAGGAAAGTAATTGTTAAC--TGGACTAA---CTACATTCAGCTTTTATGCAAAT-----TAGTCTGTTCACAGTTGTCTAGGCCAGTCTGAAAATTAGCAGATGGAGTTG---------------GAATGT--------CGTGAAAAGTTTGATTCCAATATTAATAGAGTGAT-AAGTTTGATTCTAATATTAATATTCAGAGTATT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174695050 691 + 192294377 ttaaataaaatggaaaacttagttcctaagtcac-------------------actcac-------------cacatttcaagtgcccaacagccatatgtggctagtagccaccatattggaaatcacaggtatacagcctgtctgtcagtgcagaaggttctgttgggtggtcctgCTGTAGAAAATACATCCGAAAG--TATTGAAATAAAGCAGGCATTGGcaaactggtctgccacctg-ttttgtata----gcccagaagccaaga----atcttctaattttaaatga-tacaaagaaaatcaaaagaagaataatttttg-tgaacagaaaaatatgtaaaattcaagtttcagtatccataaa-------taaagttttattggagcacagccat-attcattcacaaatacattgtctgtggctgcctttgtgctacagggg-agagctgagtagttgtgacagattgtatggccc-aaagcctaaaatgtttattatctggtcacttacagaa-----aaagtttactga-cccTGGTATA-GAGAAAACCTTGGTAAT--------------ATACCAATAGGAAAGTAATTGTTAAC--TGGACTAA---CTACATTCAGCTTTTATGCAAAT-----TAGTCTGTTCACAGTTGTCTAGGCCAGTCTGAAAATTAGCAGATGGAGTTG---------------GAATGT--------CGTGAAAAGTTTGATTCCAATATTAATAGAGTGAT-AAGTTTGATTCTAATATTAATATTCAGAGTATT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163360510 692 + 180432695 ttaaataaaatggaaaacttagTTCCTAAGTCAC-------------------ACTCac-------------cacatttcaagtgcccaACAGCCATATGTGGCTAGTAGCCACCATATTGGAAATCACAGGTATACAGCCTGTCTGTCAGTGCAGAAGGTTCTGTTGGGTGGTCCTGCTGTAGAAAACACACCCGAAAG--TATTGAAATAAAGCAGGCATTGGCAAACTGGTCTGCCACCTG-TTTTGTATA----GCCCAGAAGCCAAGA----ATCTTCtaattttaaatga-tacaaagaaaatcaaaagaagaataatttttg-tgaacagaaaaatatgtaaaattcaaGTTTCAgtatccataaa-------taaagttttattggagcacagccaT-ATTCATTCACAAATACATTGTCTGTGGCTGCCTTTGTGCTATAGGGG-agagctgagtagttgtgacagattGTATGGccc-aaagcctaaaatgtttattatctggtcacttacagaa-----aaagtttactga-CCCTGGTATA-GAGAAAACCTTGGTAAT--------------ATACCAATAGGAAAGTAATTGTTAAC--TGGACTAA---TTACATTCAGCTTTTATGCAAAT-----TAGTCTGTTCACAGTTGTCTAGGCCAGTCTGAAAATTAGCAGATGGAGTTG---------------GAATGT--------CGTGAAAAGTTTGATTCCAATATTAATAGAGTGATAAAGTTTGATTCTAATATTAATATTCAGAGTATT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110392945 707 + 127223203 ttaaataaaatgtaaaacttagttcctaagtcac-------------------actcac-------------cacatttcaagtgcccaacagccatatgtggctagtagccaccatattggaaatcacaggtatgcagcctgtctgtcagtgcagaaggttctattggGTGGTCCTGCTATAGAAAATACACCCGAAAG--TATTGAAATAAAGCAGGCATTGGcaaactggtctgccacctg-ttttgtata----gcccagaagccaaga----atcttctaattttaaatga-tgcaaagaaaatcaaaagaagaataatttttg-tgaacagaaaaatatgtaaaattcaagtttcagtatccataaa-------taaagttttattgaagcacagccat-attcattcacaaatacattgtctgtggctgcctttgtgctacggggg-agagctgagtagttgtgacagattgtatggccc-aaagcctaaaatgtttattatctggtcacttacagaa-----aaagtttactga-cccTGGTATA-GAGAAAACCTTGGTAATTTATATTAATGAGAATACCAATAGGAAAGTAATTGTTAACTGTGGACTAA---TTACATTCAGCTTTTATGCAAAT-----TAGTCTGTTCACAGTTGTCTAGGCCAGTCTGAAAATTAGCAGATGGAGTTG---------------GAATGT--------CGTGAAAAGTTTGATTCCAATATTAATAGAATGAT-AAGTTTGATTCTAATATTAATATTCAGAGTATT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23739192 717 - 128169293 ttaaataaaa-gtaaaacttagttcctgagtcac-------------------acttgc-------------cacatttcaggtgctcatcagccacatgtggctagtagccactgtactggaaatcacaggtatacaacctgtccatcagcgcagaaaattctgttggGTGGTACCGCCATA-ACAATACACCAAAAAG--TGTTGAAATGAAGCAGGCATTGGcaaactggtctggtacctgtttttgtata----gcccagaaactaaga----atcttctaattttcaatga-tgcaaagaaaatcaa---aagaatagtttttg-tgaacagaaaaatatgtaaaattcaaatttcagtatccataaattggattttaagttttattggagcacagccat-attcattcacaaatatattgtctgtggcagcttttgtgctacaggggcagagctgagtagttttgatggattgtatggcccaaaagactaaaatgtttattagctggtcacttacagaa-----aaagtttactga-cccTGGTATA-ATAAAAACCTTGGTAATTTATATTAATGGGAATGCCAATAGGAAAGTAACTGTTAACTGTGGACTAA---TTACATTCAGCTTTTATGCAGATCAAAGTAGTCTGTTCACAGTTGTCTAGGCCAGTCTGAAAATTAGCAGATGGAGTTG---------------GAATAA--------AGTGATAAGATTGATTCCAGTATTAATATAATGAG-AAGTTTGATTCTAATATTAATATTCAGAGGATT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52061566 768 -  59632846 tgagctgaaggtagacgctcaactgctgagccaccaggcgtcccAGCTATTTGAATTACATAAAATGGAGCACTcatttcaagtgcccattagctgtatgtggcgagtagctgccacattggagag--cagatacaaaacatttctgttagtgcagaaagttc---tggatggcactCCTATTGACAAGGCACCAAAAAAATTCTTGAAATAAAGcagaggttggcaaactggtctgccacctatttttgtgtaggtggcacacaaactaagaactgatgttacatttttaaatggttgtgagaaaaatca----aagaataatttgtgatacacaga-----atatgaaatccaggtctcatt-cacataag-------taaagctgtgttgga--acagccac-atgcattcacatacatgctgtctgtggctgcttttgtgccgtgactgcagagtcaagtagttgccacagactctctggcccaaaagcctaaaacactgactctttggc------cagaaagtccagagttttctgacccctgCTGTAGGAAAAAACCTAAGAAGTTTGTATTAGCGAGCATGCAAATAGAAAAGTCACCCTGCCCTGTGGGCCAAATCCTATGATGAGGTTTTATGCAGATCCAGGTAGTATGTTTACAGGTGACCAGGTCAGTCTGGAAACT-GCATGTGGACTTGAACATGGTGATTGATGAATGTACGCAGGCAGCAGGGAGGTTGACTCTGACATTAATGGAGTATC-GAGTTGttttctatttttttttttttttttttt
i canFam3.chr16            I 107 I 277
e mm10.chr6                 40387771  38 + 149736546 I

a score=7760.000000
s hg38.chr7_GL383534v2_alt      9728 4 +    119183 GAGA
s panTro4.chr7             143109976 4 + 161824586 GAGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138914021 4 + 157549271 GAGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93051170 4 + 110113093 GAGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180949841 4 + 198365852 GAGt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174695741 4 + 192294377 GAGt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163361202 4 + 180432695 GAGT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110393652 4 + 127223203 GAGt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23739909 4 - 128169293 TAGt
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40387771 38 + 149736546 I
e canFam3.chr16             52062334 277 -  59632846 I

a score=609142.000000
s hg38.chr7_GL383534v2_alt      9732 197 +    119183 TGttttctaactatgaaaataatacatgtccattgcaaaacatttggaaa-aca--tagCTCCCTTCACCCTATAAAAAAAATTCTAGTTTGATTAAAGAACTAAA-TGTAAAATAATAAAATCATTAAAGTAGTAGGGTAAatggcacacgtttatacctatgtaacaaggctgcgcctcctgtgtatgtatcccggaac
s panTro4.chr7             143109980 197 + 161824586 TGttttctaactatgaaaataatacatgtccattgcaaaacatttggaaa-aca--tagCTCCCTTCACCCTATAAAAAAAATTCTAGTTTGATTAAAGAACTAAA-TGTAAAATAATAAAATCATTAAAGTAGTAGGGTAAatggcacacgtttatacctatgtaacaaggctgcgcctcctgtgtatgtatcccggaac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138914025 197 + 157549271 TGttttctaactatgaaaataatacatgtctattgcaaaacatttggaaa-aca--tagCTCCCTTCACCCTATAAAAAAAATTCTAGTTTGATTAAAGAACTAAA-TGTAAAATAATAAAATCATTAAAGTATTAGGGTAAatggcacatgtttatacctatgtaacaaggctgcacatcctgtgtatgtacccctgaac
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93051174 196 + 110113093 TGttttctaactatgaaaacaatgcatgtccattgcaaaacatttggaaa-aca--tagCTCCCTTCACCCTAT-AAAAAAATTCTAGTTTGATTAAAGAACTAAA-TGTAAAATAATAAAATCATTAAAGTATTAGGGTAAatggcacatgtttatacctatgtaacaaggctgcacatcctgtgtatgtacccctgaac
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180949845 196 + 198365852 tgttttctaattatgaaaataatacatgtccattgcaaaacatttggaaa-aca--tagCTCCCTTCATCCTAT-AAAAAAATTCTAGTTTGATTAAAGAACTAAA-TGTAAAATAATAAAATGATTAAAGTATTAGGGTAAacggcacatgtttatacctatgtaacaaggctgcacatcctgtgtatgtacccctgaac
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174695745 196 + 192294377 tgttttctaattatgaaaataatacatgtccattgcaaaacatttggaaa-aca--tagCTCCCTTCATCCTAT-AAAAAAATTCTAGTTTGATTAAAGAACTAAA-TGTAAAATAATAAAATGATTAAAGTATTAGGGTAAACggcacatgtttatacctatgtaacaaggctgcacatcctgtgtatgtacccctgaac
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163361206 196 + 180432695 TGTTTtctaattatgaaaataatacatgTCCATtgcaaaacatttggaaa-ata--tagcTCCCTTCATCCTAT-aaaaaaaTTCTAGTTTGATTaaagaactaaa-tgtaaaataataaaatgattaaagtaTTAGGGTAAACGGCACAtgtttatacctatgtaacaaggcTGCACATCCTGtgtatgtacccctgaac
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110393656 194 + 127223203 tgttttctaattatgaaaataatacatgtccattgcaaaacatttagaaa-aca--taACTCCCTTCATCCTAT-AAAAAAATTCTAGTTTGATTAAAGAACTAAA-TGTAAAATAATAAAATGATTCAAGTATTAGGGTAAACGGcac--gtttatacctatgtaacaaggctgcacatcctgtgtatgtacccctgaac
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23739913 189 - 128169293 tgttttctaattttaaaagtaatatatgtccattgaaaaacatttggaaa-aca--tagTTCCTTTCACCCTGT-AAAAAAATTCTAGTTTGATTAAAGAACTAAA-TATAAAATAATAAAATCATTAAAGTATTAGGGTAAAT-gcacatgtttatacctatgtaacatggccgcacatcctacatatgt------gaac
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40387809 137 + 149736546 TGTTTTCTATTTATACAAGTAATTTTCGTCTCCTGGGAAATATTTGCAGACACAACCAGCCCCCTTTACCTTTG-GAAATAATTCCAGTTGAATTAATGAACTAAACTAAAAAATAATAAAACTACCTAAGTATTAAG---------------------------------------------------------------
i mm10.chr6                I 38 C 0
e canFam3.chr16             52062334 277 -  59632846 I

a score=1708883.000000
s hg38.chr7_GL383534v2_alt      9929 485 +    119183 ttaaaatagaagtttgaagtt-aaaaa-----------aaaGTATTAGGGTAAAATCTAAGTGATTATCAGTATAAAATTAAGGAGGACAAGG---CCTCTCTAAGCATGACATTTAAGGCAAAAATCATATTGATGCATTTGTCTTTTTATTTAAAAAGACATTCTAAACAAACTTTTAAATGACATATTGGGAAAAATATTAGCATGTGATAGACCAGGA---ATTCA---CTTTCCTTTTAACAAGCTCTTAGGATAAAGCAATGAGAAATGGGCAAAGGACTAATATAAAAAGTGAG-CAAGGGGTAAGAATAGAAAATTCATAAAAGAAATAAGCATAT--GAAAAAATagcttatatttgctgattatttactacatgtgaggcacctgtcctaagaattttacataatat-----tatgtaatcct---------------------tata-ggtagat---------------atctttatctgcattttgta-----ggtaaggagacag----agTGATTTCAGCAAAGAAATGCAAATTAAAATAGTAA
s panTro4.chr7             143110177 484 + 161824586 ttaaaatagaagtttgaagtt-aaaaa-----------aaaGTATTAGGGTAAAATCTAAGTGATTATCAGTATAAAATTAAGGAGGACAAGG---CCTCTCTAAGCATGACATTTAAGGCAAAAATCATATTGATGCATTTGTCTTTTTATTTAAAAAGACATTCTAAACGAACTTTTAAATGACATATTGGGAAAAATATTAGCATGTGATAGACCAGGA---ATTCA---CTTTCCTTTTAACAAGCTCTTAGGATAAAGCAATGAGAAATGGGCAAAGGACTAATATAAAAAGTGAG-CAAGGGGTAAGAATAGAAAATTCATAAAAGAAATAAGCATAT--GAAAAAATagcttatatttgctgattatttactacatgtgaggcac-tgtcctaagaattttacataatat-----tatgtaatcct---------------------tata-ggtagat---------------atctttatctgcattttgta-----ggtaaggagacag----agTGATTTCAGCAAAGAAATGCAAATTAAAATAGTAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138914222 485 + 157549271 ttaaaatagaagtttgaagttaaaaaa-----------aaaGTATTAGGGTGAAATCTAAGTGATTATCAGTATAAAATTAAGGAGGACAAGG---CCTCTCTAAGCATGACATTTAAGGCAGAAATCATATTGATGCATTTGTCTTTTTATTTAAAAAGACATTCTAAACAAACTTTTAAATGACATATTGGGAAAAATATTAGCATGTGATAGACCAGGA---ATTCA---CTTTCCTTTTAACAAGCTCTTAGGATAAAGCAATGAGAAATGGGCAAAGGACTAATATAAAAAGTGAG-CAAGGGGTAAGAATAGAAAATTCATAAAAGAAATAAGCATAT--GAAAAAATagcttatatttgctgactatttactacatgtgaggcac-tgtcctaagaattttacataatat-----tatgtaatcct---------------------tata-ggtagat---------------atctttatctgcattttgta-----ggtaaggagacag----agTGATTTCAGCAAAGAAATGCAAATTAAAATAGTAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93051370 482 + 110113093 ttaaaatagaagttcaaagtt-aaaaa-----------aaaGTATTAGGGTAAAATCTAAGTGATTATCAGTATAAAATTAAGGAGGACCAGG----CTCTCTAAGCATGACATTTAAGGCAAAAATCATATTGATGCATTTGTCTTTTTATTTAAAACGACATTCTAAACAAACTTTTAAATGACATATTGGGAAAAATATTAGCATGTGATAGACCAGGA---ATTCA---CTTTCCTTATAACAAGCTCTTAGGATAAAGCAATGAGAAATGGGCAAAGGACTAATATAAAAAGTGAG-CAAGGGGTAAGAATAGAAAATTCATAAAAGAAATAAGCATAT--GAaaaaatagcttatatttgctgactatttactacatgtgaggcac-tgtcctaagaattttacataatat-----tatgtaatcct---------------------tatagggtagat---------------atctgtatctgcattttgta-----ggtaaggagac------AGTGATTTCAGCAAAGAAATGCAAATTAAAATAGTAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180950041 472 + 198365852 ttaaaatagaagtttgaagtt---aaa-----------aaaGTATTAGGGTAAAATCTAAGTGATTATCAGTATAAACTTAAGGAGGACAAAG---TCTTTCTAAGCATGACATTTAAGGCAAAAATCATACTGATGCATTTGTCTTTTTATTTAAAAAGATATTCTA----AACTTTTAAATGACATATTGGGAAAAGTATTATCATGTGATAGACCAGGA---ATTCA---CTTTTCTTGTAACAAGCTCTTAGGATAAAGCAATAAGAAATGGGCAAAGGACTAATATAAAAAGTGAG-CAAGGGGTAAGAATAGAAAATTCATAAAAGAAATAAGCATTT--GAaaaaatagcttatatttgc----tatttactacatgctaggcac-tgtcctaagaattttacataatat-----tatgtaatcct---------------------tata-ggtaaat---------------atatttatctgcattttgta-----ggtaaggaaac------AGTGATTTCGGCAAAGAAATACAAATTAAAATAATAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174695941 472 + 192294377 ttaaaatagaagtttgaagtt---aaa-----------aaaGTATTAGGGTAAAATCTAAGTGATTATCAGTATAAACTTAAGGAGGACAAAG---TCTTTCTAAGCATGACATTTAAGGCAAAAATCATACTGATGCATTTGTCTTTTTATTTAAAAAGATATTCTA----AACTTTTAAATGACATATTGGGAAAAGTATTATCATGTGATAGACCAGGA---ATTCA---CTTTTCTTGTAACAAGCTCTTAGGATAAAGCAATAAGAAATGGGCAAAGGACTAATATAAAAAGTGAG-CAAGGGGTAAGAATAGAAAATTCATAAAAGAAATAAGCATTT--GAaaaaatagcttatatttgc----tatttactacatgctaggcac-tgtcctaagaattttacataatat-----tatgtaatcct---------------------tata-ggtaaat---------------atatttatctgcattttgta-----ggtaaggaaac------agtgatttcggcaaagaaaTACAAATTAAAATAGTAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163361402 474 + 180432695 ttaaaatagaagtttgAAGTT---AAA-----------AAAGTATTAGGGTAAAATCTAAGTGATTATCAGTATAAACTTAAGGAGGACAAAG---CCTTTCTAAGCATGACATTTAAGGCAAAAATCATACTGatgcatttgtctttttatttaaaaagatattcta----aACTTTTAAATGACATATTGGGAAAAGTATTATCATGTGATAAACCAGGA---ATTCA---CTTTTCTTGTAACAAGCTCTTAGGATAAAGCaataagaaatgggcaaaggactaaTATAAAAAGTGAG-CAAGGGGTAAGAATagaaaattcataaaagaaataagcattt--gaaaaaatagcTTATATTTGC----TATTTACTACATGCTGGGCAC-TGTCCTAAGAATTTTACATAATAT-----TATGTAATCCT---------------------TATA-GGTAAAT---------------ATCTTTATCTGCATTTTGTA-----GGTAAGGAAACAG----AGTGATTTtggcaaagaaatacaaattaaaatagtaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110393850 468 + 127223203 t-----tagaagtttgaagtt--aaaa-----------aaaGTATTAGGGTAAAATCTAAGTGATTATCAGTATAAACTTAAGGAGGACAAGG---CCTTTCTAAGCATGACATTTAAGGCAAAAATCATACTGATGCATTTGTCTTTTTATTTAAAAAGACATTCTA----AACTTTTAAATGACATATTGGGAAAAGTATTATCATGTGATAGACCAGGA---ATTCA---CTTTTCTTGTAACAAGCTCTTAGGATAAAGCAATAAGAAATGGGCAAAGGACTAATATAAAAAGTGAG-CAAGGGGTAAGAATAGAAAATTCATAAAAGAAATAAGCATTT--GAaaaaatagcttatatttgc----tatttactacatgctaggcac-tgtcctaagaattttacataatat-----tatgtaatcct---------------------tata-ggtaaat---------------atctttatctgcattttgta-----ggtaaggaaac------agtgactttggcaaagaaatgcaaattaaAATAGTAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23740102 494 - 128169293 ttaaaataaaagtttgaaatt-ttaaa-----------aaaGTATTAGGATAAAATCTAAGTGATTATCAGTATAAACTTAAGGAGGACAAGG---CCTTTCTAAGCATGACATCTAAGGCAGAAATCATACTGATGCATTTGTCTTTTTATTTAAAAAGACATTCTAAACAAACTTTTAAATTACATATTGGGAAAAATATTAGCGTGTGATAAACCAGGA---ATTCA---CTTTCTTTATAACAAGCTCTTAGGTTAAAGCAATAAGAAATGGGCAAAGGACTAATATAAAAAGTGAG-CAAAGGGTAACAATAGAAAATGCATAAAAGAAATAAGCATAT--GAGAAaatagcttatatttgc----tgactactgcatgctaggcac-tgtcctaagaattttacataatat-----tatgtaatcct---------------------cata-gttacactattaggtag-----atctttatctgtattttata-----ggtaaggagacagaAAAGGTGATTTCTTCAAAGAAGTGCAAATTTAAATAATAA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40387946 449 + 149736546 --------------------------------------------------TAACATTTAAGTGATTATTAGTAGAAACTTGAAAAGTACAAAGAATTTTTTCTAAACATGACACCTAAGGCAAATTTTATATTGATACATTCATCTACTTATTTAAAAAGATA---------AACTTGGGAATGACA-GCTGGGGAGAATATTAGGATATGGCAGACCAGCAATTATTAG---CTTTCCTTATCACAGTCTCCTAGAGTAAATCAATAAGGAATGAAC-AGGGACAATATTAAACAATGGGCCAAAGGCTAAAAATAGAAAATGCACAAAGGG---AAACATTTTAGGAAAAATAGCTCA-----------Tgtttattacatgggagtcac-tgt-ctaagaatcttacatgaatt--agctatattattctcaGATTTACACCGTGTGTGTGTATG-AGCAAGA---------------CCGTTTAACTGCATTTCATACTAAGGGTAAAGAAAA------AGTGTT-------AAGGAGCAGCAGCTGAGATAGTAA
i mm10.chr6                C 0 I 32
s canFam3.chr16             52062611 501 -  59632846 TTGGATTGAAGGATTGAATTA-GGAAAATAAAACCATGAAAGCACTAGAGTGAAATCAAAGTGTTTATCAATATAAGCTCGGGGAGGACCAGG---CCTTTCTAAGCATAGTGTCTAAGGCAAAATTCATATTGATGCATTTGTCTACTTAAAACTGAAGAAACTATAAACAACATTTTTAATGACACATTGGGAAAAAGA-----ATGTGATAGAGCAGGA---GTTAAAGCTTTCCTTTATAACAAACTATTA-------------AGAAATAGGCAAAGGACTAATATAAATAACAGG-CACAGGACAAGAATAG-AAATTCACACAGGAAATAAACAT----GGaaaaatatcttatatttgctcaatatgtactatatgctaggtac-tgccctgagaattttgcatactgtcaactcatgtaatcct---------------------tata-actgcatcatcagggagatataacttttatatgcatgtaata-----ggtaaggaaacCAAAAAAGTGCCCATATCAAAGAAATGCAAATTAAAATAACAA
i canFam3.chr16            I 277 C 0

a score=101476.000000
s hg38.chr7_GL383534v2_alt     10414 39 +    119183 GATTGAATTGTCATGACTAAA--AAGCATGTTATAGATT-------------------------------------AA
s panTro4.chr7             143110661 39 + 161824586 GATTGAATTGTCATGACTAAA--AAGCATGTTATAGATT-------------------------------------AA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138914707 39 + 157549271 CATTGAATTGTCATGACTAAG--AAGCATGTTATAGATT-------------------------------------AA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93051852 76 + 110113093 CATTGAATTGTCATGACTAAA--AAGCATGTTACAGATTAAAAGCTTAGTGGTCTCTGTCTCAAAAAAAAAAAGAAAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180950513 39 + 198365852 CATTGAATTGTCATGACTAAA--AAGCATGTTATAGGTT-------------------------------------AA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174696413 39 + 192294377 CATTGAATTGTCATGACTAAA--AAGCATGTTATAGGTT-------------------------------------AA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163361876 39 + 180432695 cattGAATTGTCATGACTAAA--AAGCATGTTATAGGTT-------------------------------------AA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110394318 39 + 127223203 CATTGAATTGTCATGACTAAA--AAGCATGTTATAGATT-------------------------------------AA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23740596 36 - 128169293 CATTGAATT---ATGACTAAA--AAGCATGTTATAGATT-------------------------------------AA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52063112 33 -  59632846 --CAGAAGT------CCTAAATTAAGCATGCTTgtgttt-------------------------------------gc
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40388395 32 + 149736546 I

a score=51593.000000
s hg38.chr7_GL383534v2_alt     10453 19 +    119183 AAGCTTAGTGGTGGTGTGT
s panTro4.chr7             143110700 19 + 161824586 AAGCTTAGTGGTGGTGTGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138914746 19 + 157549271 AAGCTTAGTGGTGGTGTGT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93051928 19 + 110113093 AAGCTTAGTGGTGGTGTGT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180950552 16 + 198365852 AAGCT---TGGTGGTGTGT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174696452 16 + 192294377 AAGCT---TGGTGGTGTGT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163361915 16 + 180432695 AAGCt---tggtggtgtgt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110394357 16 + 127223203 AAGCT---TGGTGGTGTGT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23740632 19 - 128169293 AAGCTTAGTGGTGGTatat
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40388427 19 + 149736546 GCACTCAGTGGTGGTGTGC
i mm10.chr6                I 32 I 105
s canFam3.chr16             52063145 19 -  59632846 catgtgggtggggaagtgg
i canFam3.chr16            C 0 C 0

a score=448683.000000
s hg38.chr7_GL383534v2_alt     10472 141 +    119183 ----------GTTTctgatgggaatatagattggaacatcctgtctcagcaatttggcatagtatacataaagtgtctaaaatatatgcataccttctgccctattaactg----tatttctaggaatttatcctactggaataacctgaTGAAT
s panTro4.chr7             143110719 141 + 161824586 ----------GTTTctgatgggaatatagattggaatatcctgtctcagcaatttggtatagtatacataaagtgtctaaaatatatgcataccttcggccctattaactg----tatttctaggaatttatcctactgaaataacctgaTGAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138914765 141 + 157549271 ----------GTTTctgatgggaatatagactggaacatcctgtctcagcaatttggtatagtatatatgaagtgtctaaaatatatgcataccttcggccctattaactg----tatttctaggaatttatcctactgaaataacctgaTGAAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93051947 141 + 110113093 ----------GTTTctgatgggaatatagattggaacatcctgtctcagcaatttggtatagtatacatgaggtgtctaaaatatatgcataccttcggccctattaactg----tatttctaggaatttatcctactgaaataacctgaTGAAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180950568 141 + 198365852 ----------GTTTGtgatgggaatataaattggaacatcctatctcagcaactgggtatagtatctatgaagtgtctaaaatatatgcataccttcggccctatcaggtg----tatttctaagaatttatcctactgaaataatctgaTGAAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174696468 141 + 192294377 ----------GTTTGtgatgggaatataaattggaacatcctatctcagcaactgggtatagtatctatgaagtgtctaaaatatatgcatacctttggccctatcaggtg----tatttctaagaatttatcctactgaaataatctgaTGAAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163361931 141 + 180432695 ----------gtttgtgatgggaatataaattggaaCATCCTATCTCAGCAACTGGGTATAGTATCTATGAAGTGTCTAAAATATATGCATACCTTTGGCCCTATCAGGtg----tatttctaagaatttatcctaCTGAAATAATCTGATGAAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110394373 141 + 127223203 ----------GTTTGtgatgggaatataaattggaacatcctatctcagcaactgggtatagtatctatgaagtgtctaaaatatatgcatacctttggccctattaggtg----tatttctaagaatttatcctactgaaataatctgaTGAAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23740651 141 - 128169293 ----------gtttctgctgggactataaattggaacatcctgtctcagcaacttggtgtagtatgtattaagtgtctaaaatatatgcataccttttgccccattaactg----tatttccaggaatttatcctactgaaataatctgaTGAAT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52063164 152 -  59632846 gcactcatgcatttctgctggaactgcaaattgcaacaccctttcttgatggtgtcttggggtctctgtgaagcatccaaaatagactta---atagggtccaagggcgtgcttatatttctaggaatttctcctccaggaataatcagaTGCAT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40388446 105 + 149736546 I

a score=3184657.000000
s hg38.chr7_GL383534v2_alt     10613 950 +    119183 ------ATATAATGTaggcagtc----cttttttacataatggaaatctgaaaaacactggtgaaagtggatatgtgaatgct-aaaaaaaaaaaaa-------tagattctgttccagaggaatttaaaagagaaagataaaatgtctaattataca-tctcctttataccaagtctttaataata-tgtattccgagtattttattcatgttc-tttaccattgttcttttctctgatgactgagtaccactgaatggattgagttcagt-gagtatgtgagtgcg-----ctcaagattagccacactcacaatgccaagtgctttttatctttgtgcctatt-taaaagtatacgatactgtgccgcttatcactagtagcagcaaattcatttgtttc-gtttttgcacagttctttataaaaataaaagcaaatgcaataca----ataA--AGGCAGTGTAGCTGCCGTGTAATAGCTCAAAATGTTCACTTATTA---AAAGCAGCACATTCAGTGTATGAAAGAAGCTGTA-GGAGTATAGAATGTGTGAAAATTAGGATCTCTTATACAACTATGCTCACTG----TATAATAGTAAAATATTTGCAATGAACTAAT-------CAGACTGAATAAATTTTGGTACATTTATTAAAAGTCATATCTATTTTATATATGTAT-----TA-------------TTTTCTATCTATTGACATGGGAA--AAA---TAGGTGAAAAGATTTGCA--A--CATAG----TTCCATTTTTCTTTAAAAAGGAAATACCCCCACTT----ATAAGTGAG-TTTTGTGAATGATGGAGGTAAA-GCTCCAATTTtatgttctt-tccaaatagaaa------gccagttgtccaagcgccatttattgaaatctccattttcccccattgatcttcaataaacctctgccatacatcat--gtctatatacatgTAAAtgt-ttctagtctctttcttctattgttgttccattttctcatattt-atactaatactctgcttctc
s panTro4.chr7             143110860 952 + 161824586 ------ATATAATGTaggcagtc----cttttttacataatggaaatctgaaaaacactggtgaaagtggatatgtgaatgct-aaaaaaaaaaaaa------atagattctcttccagaggaatttaaaagagaaagataaaatgtctaattataca-tctcctttatactaagtctttaataata-tgtattccgagtattttgttcatgttc-tttaccattgttcttttctctgatgactgagtacccctgaatggattgagttcagt-gagtatgtgactgcg-----ctcaagattagccacactcacaatgccaagtgctttttatctttgtgcctattataaaagtatacgatactgtgccgcttatcacgagtagcagcaaattcatttgtttc-gtttttgcacaattctttataaaaataaaagcaaatgcaataca----ataA--AGGCAATGTAGCTGCCGTGTAATAGCTCAAAATGTTCACTTATTA---AAAGCAGCACATTCAGTGTATGAAAGAAGCTGTA-GGAGTATAGAATGTGTGAAAAGTAGGATCTCTTATACAACTATGCTCACTG----TATAATAGTAAAATATTTGCAATGAACTAAT-------CAGACTGAATAAATTTTGGTACATTTATTAAAAGTCATATCTATTTTATATATGTAT-----TA-------------TTTTCTATCTATTGACATGGGAA--AAA---TAGGTGAAAAGTTTTGCA--A--CATAG----TTCCATTTTTCTTTAAAAAGGAAATACCCCCACTT----ATAAGTGAG-TTTTGTGAATGATGGAGGTAAA-GCTCCAATTTtatgttctt-tccaaatagaaa------gccagttgtccaagcgccatttattgaaatctccattttcccccattgatcttcaataaacctctgccatacatcat--gtctatatacatgTAAAtgt-ttctagtctctttcttctattgttgttccattttctcatattt-atactaatactctgcttctc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138914906 956 + 157549271 ------ATATAATGTAGGCAGTC----CTTTTTTACATAATGGAAATCTGAAAAACACTGGTGAAAGTGGATATGTGAATGCT-AAAAAAAAAAAAA---AAAatagattctgttccagaggaatttaaaagagaaagataaaatttctaattataca-tttcctttataccaagtctttaataata-tgtattccgagtattttgttcatgttc-tttaccattgttcttttctctgatgactgagtaccactgaatggattgagttcagt-gagtatgtgattgcg-----ctcaagattagccacattcacaatgccaagtgctttttatctttgtgcctagtataaaagtatacgatactgtgctgcttatcactagtagcagcaaattcatttgtttctttttttgcgcaattctttataaaaataaaagcaaatgcaataca----ataA--AGGCAATGTAGCTGCCGTGTAATAGCTCAAAATGTTCACTTATTA---AAAGCAGCACATTCAGTGTATGAAAGAAGCTGTA-GGAGTATAGAATGTGTGAAAATTAGGATCTCTTATACAACTATGCTCACTG----TATAATAGTAAAATATTTGCAATGAACTAAT-------CAGACTGAATAAATTTTGGTACATTTATTAAAAGTCATATCTATTTTATATATGTAT-----TA-------------TTTTCTATCTATTGACATGGGAA--AAA---TAGGTGAAAAGATTTGCA--A--CATAG----TTCCATTTTTCTTTGAAAAGGAAATACCCCCACTT----ATAAGTAAG-TTTTGTGAATGATGAAGGTAAA-GCTCCAATTTtatgttctt-tccaaacagaaa------gccagttgtccaagcaccatttattgaaatctccattttcccccattgatcttcagtaaacctctgccatacatcat--gtctatatacatgTAAAtgt-ttctagtctctttcttctattgttgttccattttctcatattt-atactaatactctgcttctc
i ponAbe2.chr7             C 0 I 4
s nomLeu3.chr13             93052088 954 + 110113093 ------ATATAATGTaggcagtc----cttttttacataatggaaatctgaaaaacactggtgaaagtggatatgtgaatgct-aaaaaaaaaaaaa----aaaaagattctgttccagaggaatttaaaagagaaagataacatttgtaattataca-tctcctttataccaagtctttaataata-tgtattccgagtattttgttcatgttc-tttaccattgttcttttctctgatgactgagtaccagtgaatggattaagttcagt-gagcatgtgatttcg-----ctcaagattagccacactcacaatgccaagtgctttttatctttgtgcctattataaaagtatacaatactgtgctgcttatcactagtagcagcaaattcatttgtttc-ttttttgcacaactctttataaaaataaaagcaaatgcaataca----ataA--AGGCAATGTAGCTGCCGTGTAATAGCTCAAAATGTTCACTTATTA---AAAGCAGCACATTCAGTGTATGAAAGAAGCTGTA-GGAGTGTAGAATGTGTGAAAATTAGGATCTCTTATACAACTATGCTCACTG----TATAATAGTAAAATATTTGCAATGAACTAAT-------CAGACTGAATAAATTTTGGTACATTTATTAAAAATCATATCTATTTTATATATGTAT-----TA-------------TTTTTTGTCTATTGACATGGGAA--AAA---TAGGTGAAAAGATTTGCA--A--CATAG----TTCCATTTTTCTTTAAAAAGGAAATACCGCCACTT----ATAAGTGAG-TTTTGTGAATGATGCAGGAAAA-GCTCCCATTTtatgttctt-tccaaatagaaa------gccagttgtccacgcaccatttattgaaatctccattttcccctattgatcttcaataaacctctgccgtatatcat--gtctatatacatgTAAAtgt-ttctagtctctttcttctattgttgttccattttctcatattt-atactaatactctgcttctc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180950709 952 + 198365852 ------ATATAATGTaggcagtc----cttttttacataatggaaat-tgaaaaacactggtgaaagtggatatatgaatgctaaaaaaaaaacaaa---acaaaaaattctgttccagaggaatttaaaagagaaagnnnnnnnnnnnnnttatacattctcctttataccaagtctttaataata-tgtatttcgagtattttgttcatgttc-tttaccattgttcttttctctgatgactgagtaccagtgaatggattgagttcagt-gagtatgtgatggtg-----atcaagattagccacactcacaatgccaagtgctttttatctttgtgcttattataaaagtatacgatactgtgctgcttatcactagtagtagcaaattca----tttc-gtttttgcacaattctttataaaaataaaagcaaatgcaataCA----TTAA--AGGCAATGTAGCTGCCGTGTAATAGCTCAAAATGTTCACTTATTA---AAACCAGTACATTCAGTGTATGAAAGAAGCTGTA-GAAGTGTAGAATGTGTGAAAATTAGGATCTCTTATACAACTATGCTCACTGTATTTATAATAGTAAAATATTTGCAATGAACTAAT-------CAGACTGAATAAATTTTGGTACATTTATTAAAAATCATGTCTA--TTATAGATGTAT-----TA-------------TTTTCTATCTATTGACACGGGAA--------------AAAAGATTTGCA--A--CATAG----TTCCATTTTTCTTTAAAAAGGAAATACCCCCACTTA---ATaagtgag-ttttgtaaatgatggaggtaaa-gctccaattttatgttctt-tccaaatagaaagttggtgccagttgtccaagcaccatttattgaaatctccattttcccccactgatcttcaatagacctctgccgtacatcat--gtctatatacatgtaaatgt-ttctagtctctttcttctattgttgttccattttctcatacttaacattaat-ctctgcttctc
i rheMac3.chr3             C 0 I 4
s macFas5.chr3             174696609 951 + 192294377 ------ATATAATGTAGGCAGTC----CTTTTTTACATAATGGAAAT-TGAAAAACACTGGTGAAAGTGGATATATGAATGCT-AAAAAAAAACAAA---ACAAAAAATTCTGTTCCAGAGGAATTTAAAAGAGAAAGataaaatttctaattataca-tctcctttataccaagtctttaataata-tgtatttcgagtattttgttcatgttc-tttaccattgttcttttctctgatgactgagtaccagtgaatggattgagttcagt-gagtatgtgatggcg-----atcaagattagccacactcacaatgccaagtgctttttatctttgtgcctattataaaagtatacgatactgtgctgcttatcactagtagtagcaaattca----tttc-ttttttgcacaattctttataaaaataaaagcaaatgcaataCA----TTAA--AGGCAATGTAGCTGCCGTGTAATAGCTCAAAATGTTCACTTATTA---AAACCAGTACATTCAGTGTATGAAAGAAGCTGTA-GAAGTGTAGAATGTGTGAAAATTAGGATCTCTTATACAACTATGCTCACTGTATTTATAATAGTAAAATATTTGCAATGAACTAAT-------CAGACTGAATAAATTTTGGTACATTTATTAAAAATCATGTCTA--TTATAGATGTAT-----TA-------------TTTTCTTTCTATCGACACGGGAA--------------AAAAGATTTGCA--A--CATAG----TTCCATTTTTCTTTAAAAAGGAAATACCCCCACTTA---ATaagtgag-ttttgtgaatgatggaggtaaa-gctccaattttatgttctt-tccaaatagaaagttggtgccagttgtccaagcaccatttattgaaatctccattttcccccactgatcttcaatagacctctgccgtacatcat--gtctatatacatgtaaatgt-ttctagtctctttcttctattgttgttccattttctcatacttaacattaatactctgcttctc
i macFas5.chr3             C 0 I 4
s papAnu2.chr3             163362072 947 + 180432695 ------ATATAATGTAGGCAGTC----CTTTTTTACATAATGGAAATCTGAAAAACACTGGTGAAAGTGGATATatgaatgct-aaaaaaa---aaa---aaaaaaaattctgttccagaggaatttaaaagagaaagacaaaatttCTAATTATACA-TCTCCTTTATACCAAGTctttaataata-tgtatttcgAATATTTTGTTCATGTTC-TTTACCATTGTTCTTTTCTCTGATGACTGAGTACCAGTGAATGGATTAAGTTCAGT-GAGTATGTGATGGCG-----ATCAAGATTAGCCACACTCACAATGCCAAGTGCTTTTTATCTTTGTGCCTATTATAAAAGTATACGATACTGTGCTGCTTATCACTAGTAGTagcaaattca----tttc-ttttttgcacaattctttataaaaataaaagcaaatgcaataca----TTAA--AGGCAATGTAGCTGCCGTGTAATAGCTCAAAATGTTCACTTATTA---AAACCAGTACATTCAGTGTATGAAAGAAGCTGTA-GAAGTGTAGAATGTGTGAAAATTAGGATCTCTTATACAACTATGCTCACtgtatttataatagtaaaatatttgcaatgaaCTAAT-------CAGACTGAATAAATTTtggtacatttattaaaaatcatgtcTA--TTATAGATGTAT-----TA-------------TTTTCTATCTATTGACATGGGAA--------------AAAAGATTTGCA--A--CATag----ttccatttttctttaaaaaggaaatacccccactt----ataagtgag-ttTTGTGAATGATGGAGGTAAA-GCTCCAATTTTATGTTCTT-TCCAAATAGAAAGTTGGTGCCAGTtgtccaagcaccatttattgaaatctCCATTTTCCCCCACTGATCTTCAATAGACCTCTGCCGTACATCAT--GTCTATATACATGTAAATGT-TTCTAGTCTCTTTCTTCTATTGTTGTTCCATTTTCTCATACTT-ACATTAATACTCTGCTTCTC
i papAnu2.chr3             C 0 I 4
s chlSab2.chr21            110394514 951 + 127223203 ------ATATAATGTaggcagtc----cttttgtacataatggaaatctgaaaaacactggtgaaagtagatatatgaatgct-aaaaaaaa--aaa---aaaaaaaattctgttccagaggaatttaaaagagaaagataaaatttctaattataca-tctcctttataccaggtctttaataata-tgtatttcgagtattttgttcatgttc-tttaccattgttcttttctctgatgactgagtaccagtgaatggattgagttcagt-gagtatgtgatggtg-----atcaagattagccacactcacaatgccaagtgctttttatctttgtgcctattataaaagtatatgatactgtgctgcttatcactagtagtagcaaattca----tttc-ttttttgcacaattctttataaaaataaaagcaaatgcaataCA----TTAA--AGGCAATGTAGCTGCCGTGTAATAGCTCAAAATGTTCACTTATTA---AAACCAGTACATTCGGTGTATGAAAGAAGCTGTA-GAAGTGTAGAATGTGTGAAAATTAGGATCTCTTATACAACTATGCTCACTGTATTTATAATAGTAAAATATTTGCAATGAACTAAT-------CAGACTGAATAAATTTTGGTACATTTATTAAAAATCATGTCTA--TTATAGATGTAT-----T--------------TTTTCTATCTATTGACATGGGAA--AAA---GAGGTGAAAAGATTTGCA--A--CATAG----TTCCATTTTTCTTTAAAAAGGAAATACCCccactt----ataagtgag-ttttgtgaatgatggaggtaaa-gctccaattttatgttctt-tccaaatagaaagttggtgccagttgtccaagcaccatttattgaaatctccatttccccccactgatcttcaatagacctctgccgtacatcat--gtctatatacatgtaaatgt-ttctagtctctttcttctattgctgttccattttctcatactt------aatactctgcttctc
i chlSab2.chr21            C 0 I 4
s calJac3.chr8              23740792 925 - 128169293 ------ATATAATGTAGGCAGTC----CTTTTTTACATAATGGAAATCTG-AAAACATTGGTGAAAGTGGATATATGAATGCT-aaaaaaaaaaaaaaaaaaaaGAGATTCTGTTCCAGAG-------------------aaaatttctaattataca-tcttcttt--------------ataata-tgtattgcgagcattttgttcatgttc-tttactattgttcttttctctaatgactgagtaccaataaatggattgagttcagt-gagtatgtgactgcg-----ctcaagattagccacattcacagtgccaagtgctttttatctttgtgcctattataaaagtatatgatactgtgcttcttatcactaggagcagcaaattcatttgtttc-ttttttgcacaattctttataaaaataaaagcaaatgcaatacaatatttaa--aGACAGTGTAGTTGCCATGTAATAGCTCAAAATATTCACTTATTA---AAAGCAGCACATTCAGTGTATGAAAGAAGCTGTA-GGAGTGTGGAATGTGTGAAAA----------TTACACAACTATGCTCACTGGATTTATAAGAGTAAAATATTTGCAGTGAACTAAT-------CAGACCGAATATATTTTGGTACATTTATTAAAAATCATATCTATTTTATATATGTAT-----TA-------------TTTTCTATCTATTGATATGGGAAAAAAA---TAGGTGAAAAGCTTTGCA--ATGTGTAG----TTTCGTTTTTCTTTAAAAAGGAAATACTCCCACCTACCTATAAGTGAG-TTTTATGACTGATGGAGGTCAA-GCTCCAACTTtatgttctt-tccaaatagaaa------gccagttgtccaagcaccatttattgaaatgtccatttccccccactgatcttcaataaac--ctgccgtacgtcat--gtctatatatgTGTAAAtgt-ttctggtctctttcttctat---tgttctattttcttatgcct-gtactaatactctgcttctc
i calJac3.chr8             C 0 I 1
s mm10.chr6                 40388551 841 + 149736546 ------ACTTACTGTCCACCGTC----TTCCCTTACTTGACACAGAATTATGAAACCACCATGAAGG-------------GAT-GAGGTTGAACAGT----------CCTCTGTT-GGGAGAGATTTTTGAGAAGAAGataacatttct-attacaca-ctctctttattctcagtctgtggtaacgctgtatttgcagtg-tttgctcctgttcttttgccattgttcttttctccgaggactgaatctc--tgaatgcattgcgtgcagt-gagcctgtggttgcagctctctctagatgagccacattcaggccgctgaatgc-tcttatctttgtgctaattacaaagctctgtgacac--tgcttcttatctctagt--cagt-----------tctc-tttccttcaccactcT--------GCCAGAGCAGATACAGTAAA----ATAGTCACATACTGTAGCTGTCATGTAATAGTT--AAATATTTACTTATCA-TTAAAATAATATCTCCATAATAAGAAAACAGCTTTA-GGATTGTGGAATTTCAGAAATTTAATGTCTCTTAAATAAGCATGTTTATTC----TTTAGTAGCACAGTATATTAAATAGATT------------GAGTAAATAACTATTAATGCTTTAGTTTAAAGTAATATATAATCTTTATATTTAC-----TAATGTGGCAAGATGCTCATCATATATTGCTGAGTGAT-----------TTTAAATGATTTTCATGA--GATAGTTACTTCCATTGTTATTTTTAAAAAACTTG---CCACCT----ATAATTGAG-TTTTGTGAATAGCACAGGTAAAGGCTCCAATTTTATTTACTTATTCGAGTA----------GCCAATTAATCAGAT-CAGTTTATTGA------CTCTTTCCCCTAGAG-----------------------------------ATGGACAGATCATtgtgtgctag--------------------------------------aaactga-actcagctcctc
i mm10.chr6                I 105 I 33
s canFam3.chr16             52063316 976 -  59632846 ATACATATGTAGTGTAgccattcccttctttcttacataatggaattctg-gaaacactggtgaacataaaggtattaaggtc-agaaaaaaataga-----------ttctgttctagaggaatttcaaaaagaaagataaaatttctaattctaca-ttgcttttatacccaatctctgattata-attatttctagtattttgttcttgttc-tttaacattgttcttttctctgatgacggaacaccaatgaatggatgaagttcagtggagaaggtgatggtgg----ctccagattaggcacatgcagaatgccgagcgctttttatcttggtgccaattatgagagtgtaagattctgtgctgcttatcacaaggagcagaccattca----tttt-ctgtttccacacgtctttgtaaaaataaaagcaaatgcaataaaatattcaa--aGACAATGAAGCTGCCATGTGATAGCTCAAAA--CTCATTTATCATTTTAAAAAGTACATTCAGA--ATCAAAGAGCCTTTACAGGGTGTGGAATGTGTGGAAATTAGGATCTCTTGTACAG-TCTGTTCACTGTATTTATAATAGCAACATATGTAAAACAAATGGACTGGGGGACTGATTAAATCCATTCTGGTACATTTATTTAAAATgttctcta-tttactgacacggaacgata-------------ttcatcatatattgttaaatgaa--aaaaccaggctagtatgatatgcatca--catga----ttctatttttattttaaaaagaAACACTttcacct----ataattgagtttttgtgaatgatggaggtaag-gctctaattttgtaatctt-tgcccatagaaa------gcctattgtccaagcaccatgtatttaccaaacatcttccacccccccatctgctgtaaagc-cttttatactgcgggagcagatgtgcatggatgtat-ttgtaggttctcgattc---agttgctctgtttttctaaacct-gtattagtatggtgtttttt
i canFam3.chr16            C 0 C 0

a score=182206.000000
s hg38.chr7_GL383534v2_alt     11563 61 +    119183 -------ttattatagttttataataagttctatgtttttctcttttt---acacagtctcttggctattc
s panTro4.chr7             143111812 61 + 161824586 -------ttattatagttttataataagttctatgtttttctcttttt---acacagtctcttggctattc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138915866 61 + 157549271 -------ttattatagttttataataagttctatgtttttctcttttt---acacagtctcttggctattc
i ponAbe2.chr7             I 4 C 0
s nomLeu3.chr13             93053042 61 + 110113093 -------ttattttcgttttataataagttctgtttttctcttttttt---acacagtctcttggctgttc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180951665 62 + 198365852 -------ttattacagttttataataagttccatgtttttcttttttt--aaaacagtctcctggctattc
i rheMac3.chr3             I 4 C 0
s macFas5.chr3             174697564 62 + 192294377 -------ttattacagttttataataagttccatgtttttcttttttt--aaaacagtctcctggctattc
i macFas5.chr3             I 4 C 0
s papAnu2.chr3             163363023 62 + 180432695 -------TTATTACAGTTTTATAATAAgttccatgtttttcttttttt--aaaacagtctcCTGGCTATTC
i papAnu2.chr3             I 4 C 0
s chlSab2.chr21            110395469 62 + 127223203 -------ttattacagttttataataagttccatgtttttcttttttt--aaaacagtctcctggctattc
i chlSab2.chr21            I 4 C 0
s calJac3.chr8              23741718 64 - 128169293 -------taattatagttttataagttccactatgtttttctctttttttaaaacagtctcttggctattc
i calJac3.chr8             I 1 C 0
s canFam3.chr16             52064292 65 -  59632846 ttttttttaattatcattttataat-ccctctatgtttttc--ttctt---aaagagtctcttggctattc
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40389392 33 + 149736546 I

a score=1086175.000000
s hg38.chr7_GL383534v2_alt     11624 293 +    119183 ttagctcatttgagttctataaatattttagaatgtttattttattaaattccacataaaaatgttataatattgatc-tcactgcattgtacccatagatcaatttggagagaaatgacatttctacaatattgactcctctagcatatgaacggggtatatctcttcatttatttaggtcttcaatgtctttcaatgaagttttatagttttctctggaatatcctgtc-------------ttttgctggatatattcccagttatcttaa-ttttt-atgctattctaaataatatctattaaaa
s panTro4.chr7             143111873 293 + 161824586 ttagctcatttgagttctataaatattttagaatgtttattttattaaattccacataaaaatgttataatattgatc-tcactgcattgtacccatagatcaatttggagagaaatgacatttctacaatattgactcctctagcatatgaacggggtatatctcttcatttatttaggtcttcaatgtctttcaatgaagttttatagttttctctggaatatcctgtc-------------ttttgctggatatattcccagttatcttaa-ttttt-atgctattctaaataatatctattaaaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138915927 293 + 157549271 ttagctcatttgggttctataaatattttagaatgtttattttattaaattccacataaaaatgttataatattgatc-tcactgcattgtacccatagatcaatttggagagaaatgacatttccacaatattgactcctctagcatatgaacggggtgtctctcttcatttatttaggtcttcaatgtctttcaatgaagttttatagttttctctggaatatcctgtc-------------ttttgctggatatattcccagttatcttaa-ttttt-atgctattctaaataatatctcttaaaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93053103 293 + 110113093 ttagctcatttgagttctataaatattttagaatgtttattttattaaattccacataaaaatgttataatattgatc-tcactgcattgtacccatagatcaatttggagagaaatgacatttctacaatattgactcctctagcatatgaacggggtatatctcttcatttatttaggtcttcagtgtctttcaatgaagttttatagttttctctggaatatcctgtc-------------ttttgctggatatattcccaggtatcttaa-ttttt-atgctattctaaataatatctcttaaaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180951727 288 + 198365852 ttagctcatttgagttctatgaatattttagaatg-----tttattaaatcccacatagaaatgttataatattgatc-tcactgcattgtacccatagatcaatttggagagaaatgacatttctacaatattgactcctctcgaatatgaacggggtgtatctcttcatttgtttagggcttcaatgtctttcaatgaagttttatagttttctctagaatattctgtc-------------ttttgctggatatattcccagttatcttaa-ttttt-atgctattctaaataatatctcttaaaa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174697626 288 + 192294377 ttagctcatttgagttctatgaatattttagaatg-----tttattaaatcccacatagaaatgttataatattgatc-tcactgcattgtacccatagatcaatttggagagaaatgacatttctacaatattgactcctctcgaatatgaacggggtgtatctcttcatttgtttagggcttcaatgtctttcaatgaagttttatagttttctctagaatatcctgtc-------------ttttgctggatatattcccagttatcttaa-ttttt-atgctattctaaataatatctcttaaaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163363085 288 + 180432695 TTAGCTCATTTGAGTTCTATGaatattttagaatg-----tttattAAATTCCACATAGAAATGTTATAATATTGATC-TCACTGCATTGTACCcatagatcaatttggagagaaaTGACATTTCTACAATATTGACTCCTCTCGAATATGAACGGGGTGTATCTCTTCATTTGTTTAGGGCTTCAATGTCTTTCAatgaagttttatagttttctctagAATATCCTGTC-------------TTTTGCTGGATATATTCCCagttatcttaa-ttttt-atgcTATTCTAAATAATAtctcttaaaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110395531 288 + 127223203 ttagctcatttgagttctatgaatattttagaatg-----tttattaaattccatatagaaatgttataatattgatc-tcactgcattgtacccatagatcaatttggagagaaatgacatttctacaatattgactcctctcgcatatgaacggggtgtatctcttcatttgtttagggcttcaatatctttcaatgaagttttatagttttctctagaatatcctgtc-------------ttttgctggatatattcccagttatcttaa-ttttt-atgctattctaaataatatctcttaaaa
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23741782 294 - 128169293 ttagctcatttgagttccataaatattttagaatgtttattttattaaattccacgtaaaaatgttataatattgatc-ttactgcattgtacccatagatcaacttggagagaaatgacatctctacagtactgactcctgtagcatatgaatggggtatatctcttcatttatgtagttctt-------------tgaaattttatagttttctctagaatagcctgtccaatatatctatatctcactggatatattcccagttatcttaatttttt-atgctattctaaatatctttttttgaga
i calJac3.chr8             C 0 I 2882
s mm10.chr6                 40389425 272 + 149736546 tcagccc-cATGCTTTCTATAAATACTTGAGGGTG-----TTTATTAGGTTCCTCAtagaagttttatacggt----------tgcactgtacacata---caacttgaggaaaaatggcatttctatagtattgac-cctgtggcatatcaacgtgatgtatcccttcctttactgagggcttcaatatctctcaa-ggtgttttatgattttctctctagtatt-tgtc-------------tattgctaggtatactcatggttatcttac-ttttg-atactattatcagtataatctcttaaaa
i mm10.chr6                I 33 C 0
s canFam3.chr16             52064357 277 -  59632846 ttgactc-tttgacctcaataaatcccttaaaagttttattttattaagtcccacataaaaat-ctgttatattgatcagaattacattgaacccgtagatcaatttgaagagaaatgacacttctataatattgactcttctgtggtatgaacatagcagagctctt---------aggcttgtaatgcctttcaatgaag-tttatagtcct------aacattttgtc-------------ttttgctggatatattcctggtcatcttaa-tttttggtgctgttttagacagtatcccttaaat
i canFam3.chr16            C 0 C 0

a score=1458738.000000
s hg38.chr7_GL383534v2_alt     11917 531 +    119183 tttcattttc---tacctgatttagtagatggacatata----------------------attga---------------------------ttttt--atatcaatgctgaatcagcaacctaattaaattattattaattattctaactttctttcaatgaattctttcaaattttctacagatttagtcatggccaat-gcaaatagtgcaaggtttgttttctctcttcaaatacttatccttacaatccttcatttta-cttagagcactggataggacctcagtacatggttaaatagaagtagcagtaacaggagtccccatcgtc-tttcttatttctgatttagagagaaagtcttcattgcttcatgcttgtatttaatgtgctttc-tttttttatagacaccctttatcagattaaggcagttcctt---------tctattcccag-tttgctaagcattt-ttatctttcatgttaaatatcttagatatttaattttatcaagtactcttccagcatctattgagataataaagtttcctcat-ttaatctgtcaaagcaataaaatgaattgatttttgaatgt
s panTro4.chr7             143112166 531 + 161824586 tttcattttc---tacctgatttagtagatggacatata----------------------attga---------------------------ttttt--atatcaatgctgaatcagcaacctaattaaattattattaattattctaactttctttcaatgaattctttcaaattttctacagatttagtcatggccaat-gcaaatagtgcaagttttgttttctctcttcaaatacttatccttacaatccttcatttta-cttagagcactggataggacctcagtacatggttaaatagaagtagcaataacaggagtccccatcgtc-tttcttatttctgatttagagagaaagtcttcattgcttcatgcttgtatttaatgtgctttc-tttttttatagacaccctttatcagattaaggcagttcctt---------tctattcccag-tttgctaagcattt-ttatctttcatgttaaatatcttagatatttaattttatcaagtactcttccagcatctattgagataataaagtttcctcat-ttaatctgtcaaagcaataaaatgaattgatttttgaatgt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138916220 533 + 157549271 tttcattttc---tacctgatttagtagatggacataca----------------------attga--------------------------tttttt--atatcagtgctgaatcagcaacctaattaaattattattaattattctaactttctttcaatgaattctttcaaattttctacagatttagtcatggccaat-gcaaatagtgcaagttttgttttctctcttcaaatacttatccttagaatccttcatttta-cttagagcactggataggacctcagtacatggttaaatagaagtagcagtaacaggagtccccatcgtc-tttcttatttctgatttagagagaaagtcttcattgcttcattcttgtatttaatgtgttttcttttttttatagataccctttatcagattaaggaagttcctt---------tctactcccag-tttgctaagcattt-ttatctttcatgttaaatatcttagatatttaattttatcaagtactcttccagcatctattgagataataaagtttcttcat-ttaatctgtcagagtaataaaatgaattgatttttgaacgt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93053396 525 + 110113093 tttcattttc---tatctgatttagtagatggacataca----------------------attga--------------------------tttttt--acatcaatgctgaatcagcaacctaattaaattattattaattattctaactttctttcaatgaattctttcaaattttctacagatttagtcatggccaat-gcaaatagtgcaagttttgttttctctcttcaaatacttatccttacaatccttcatttta-cttagatcactggctaggacctcagtacatggttaaatagaagtagcaataacaggagtccccatcgtcttttcttatttctgatttagagagaaagtcttcattgtttcattcttgtatttaatgtgttttc-tttttttatagataccctttatcagattaaggaagttcctt---------tctattcccag-tttgctaagcattt-ttatctttcatgttaaatatcttagatatttaattttatcaagtactcttccagcatctattgagataataaagtttcctcat-ttaatctgtcaaagcaata--------tgatttttgaatgt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180952015 532 + 198365852 tttcattttc---tgtctgatttagtagatggacatatannnnnnnnnnnnnnnnnnnnnn------------------------------------------------ctgaataagcaacctaattaaattattattaattattctaactttctttcaatgaattctttcaaattttctatagatttcgtcatggccaat-gcaaatagtgcaagttttgttttctctcttcaaatacttatccttacaatccttcatttta-cttagagcactggctaggacctcagtacatggttgagtagaagtagcaataacaggagtccccatcgtc-tttcttatttctgatttagagagaaagtcttcattgcttcattcttgtatttaatgtgttttc-tttttttatagataccctttatcagattaaggaagttcctt---------tctattcccag-tttgcta--cattt-ttatctttcatgttaaatatcttagatacttaattttatcaagtactcttccagcatctattgagataataaagtttcctcat-ttaatctgtcaaagcaataaaatgaattgatttttgaatgc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174697914 530 + 192294377 tttcattttc---tgtctgatttagtagatggacatata----------------------attga--------------------------cttttt--atatcaatgctgaatcagcaacctaattaaattattattaattattctaactttctttcaatgaattctttcaaattttctatagatttcgtcatggccaat-gcaaatagtgcaagttttgttttctctcttcaaatacttatccttacaatccttcatttta-cttagagcactggctaggacctcagtacatggttgagtagaagtagcaataacaggagtccccatcgtc-tttcttatttctgatttagagagaaagtcttcattgcttcattcttgtatttaatgtgttttc-tttttttatagataccctttatcagattaaggaagttcctt---------tctattcccag-tttgcta--cattt-ttatctttcatgttaaatatcttagatacttaattttatcaagtactcttccagcatctattgagataataaagtttcctcat-ttaatctgtcaaagcaataaaatgaattgatttttgaatgc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163363373 532 + 180432695 tttcattttc---tgtctgaTTTAGTAGATGgacatata----------------------attta--------------------------cttttt--atatcaATGCTGAATCAGCAAcctaattaaattattattaattattctaaCTTTCTTTCAAtgaattctttcaaattttctatagATTTCGTCATGGCCAAT-GCAAATAGTGcaagttttgttttctctcttcaaatACTTATCCTTACAATCCTTCATTTTA-CTTAGAGCACTGGCTAGGACCTCAGTACATGGTTGAGTAGAAGTAGCAATAACAGGAGTCCCCATCgtc-tttcttatttctgatttaGAGAGAAAGTCTTCATTGCTTCATTCTTGTatttaatgtgttttc-tttttttatagataccctttatcagattaaggaagttcctt---------tctattcccag-tttgctaaccattt-ttatctttcatgttAAATATCTTagatacttaattttattaaGTACTCTTccagcatctattgagataataaagTTTCCTCAT-TTAATCTGTCAAAGCAATAAAatgaattgatttttgaatgc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110395819 532 + 127223203 tttcattttc---tgtctgatttagtagatggacatata----------------------attga--------------------------cttttt--atatcaatgctgaatcagcaacctaattaaattattattaattattctaactttctttccatgaattctttcaaattttctatagatttagtcatggccaat-gcaaatagtgcaagttttgttttctctcttcaaatacttatccttacaatccttcatttta-cttagagcactggctaggacctcagtacatggttgagtagaagtagcaataacaggagtccctatcgtc-tttcttatttctgatttagagagaaagtcttcattgcttcattcttgtatttaatgtgttttc-tttttttatagataccctttatcagattaaggaagttcctt---------tctattcccag-tttgctaaccattt-ttatctttcatgttaaatatcttagatacttaattttatcaagtactcttccagcatctattgagataataaagtttcctcat-ttaatctgtcaaagcaataaaatgaattgatttttgaatgc
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40389697 408 + 149736546 cttcatttc------tctgactgaagagacagacatgta----------------------attgtgtgtgtttgtgtgtgtgtgtgtgtatgtgtgt--gtgttgatgctgaatccgcatcttagttaaattcttattaattatgtttgcct-------gtgagttattttaggtttgttatAGGTTTTGCTATTATCAACAGCAAAAAGTGCCAGC------------------------------------------------------------------------------------CAGGAGTAATGCTAATGGGGG----------C--------------------------------CATTGCTTTGTTTTTAAATTTGATAGAttttg---------gggatacattttattaga-tgaggaagtttctcataagaaaaactttgctagg-tttgccaagagtttattaac--------taaatatcttagacattaaattctatcaagtatcttttcatcatccattaaggcaataggatt--ctcac-tgaatctgccaa--------tatgAGCTGGTCTTTGAATGC
i mm10.chr6                C 0 C 0
s canFam3.chr16             52064634 494 -  59632846 tttcttttttaaatattagatt---tagatggacatgta----------------------attga--------------------------ctttttaaatattgataccaaatcaacagct--------ttataactaa--attctaagtt----tggatggattcctttgggttttgtatagattgagtcctaacaaat-gcaaatggcgcaagttttgtttt-tcctttcaaatactgggactgctaatcgtttctcttaccttcctgctgtggctaggacctcagtacagtgctcaatagaagtagtggtagtcagtgt-----------catctgaagcctgatgtagacagaaaggtttcattgctacgttcttgagattgatgggattt--tttttttatagatactctttataagattaaggaagttgcct---------tttattcctaattttgctaagagatt-ttatcatgactgc------------atatttaattttatcaagtccctttccagcatctatcaagata-----gtcttctcatgtgaatctgtcagggtcgtctaacatattgatttttgcatgt
i canFam3.chr16            C 0 I 797
e calJac3.chr8              23742076 2882 - 128169293 I

a score=3819357.000000
s hg38.chr7_GL383534v2_alt     12448 1528 +    119183 taaTGTGAGActtttggccaagatgtagcaaaaagcaccagctttataccttaaacaccttaaaaattggacaaaatctttgaaacaactatatgagacattggtatgagacaagcagcataggacagtgagtccagagagcaagaagttgaacacagtgagcctgatgcttgcccgaggtgactgctggagagaggccacagcctgcggagagggagcccacacagagcccatgccctacctcagttgaggggtctttgagaattt-gagaaatcaaggcagctagaattgcaaggcaggatacaagagagccccatggagaggagagccgcacccagaaccaagctagaggtttacggaggtgtcctctggaatcttcagctgagtactgacaggtgcatgcatgtgagaaaccaccacccgagatagaggttgagttacctaccagtgagcaggcgggacagtctcaggagagtcagtcctctcacaaagccaggaatagttcgtgttcaaaccaattagagtagaaaatcctcttcagacatggggcattgggtagtgtcctcagaaaggtattgcctcagtagtgagtcaaaattaattctagactaaaggctgccctcttccctgttaacaaagctaaaggctcacctccaaagaaccacagtttctttctaggtaacttaattgtgcctccagaacaaagctttagaacaggggtcagcaaaggacagcccacaggcccgactatcctgctgcctgtatttgtacagccttgaagctaacaatat--tttttacatttttaaatcattgaaaaaaatcaaaagaagagtatttttccccgttacgtgtggaaattgtcttcaaatttcagtgtctttaagtcaaattttactggaacacaggcaggctaattcatttgagtatattctctggttgctttcagctactatggctgagttgaatagctgtgagagagacctcatggtctgcaagcctacagtgttcactctctggctctttacagaaaatgtttcccgac-cctgttctagctgaagtgtggctctcccctgagttttgcctttcccacagtc--tttaagcagtggctgtgctttctttcttttcctccccttgtatgctgggcctggtgacttggtggttgtcctcctgactcatcactgctttaacccattcttcctcctcct-ctctaactacccccccacccagccccacctctcaatgtcctattgtcagagcagatcattgctcctgggagctcctgaaccctgggccgttcttacacatttatctataatgttaattcctagcccactgtctccctctccaat-ctactcctgtcttaattctcaacacggcagccagagtgatcctattgaaatgaagccagaacatatttccctccttagaaccctccagtggctctctgattcattcagcctaaaagccagcttcctcgccatggtctatgaggctctgctgatgtagctcctctcttcc---ctgtcttcct---
s panTro4.chr7             143112697 1526 + 161824586 taaTGTGAGActtttggccaagatgtagcaaaaagcaccagctttataccttaaacaccttaaaaattggacaaaatctttgaaacaactatatgagacattggtatgagacaagcagcataggacagtgagtccagagagcaagaaattgaacacagtgagcctgatgcttgcccgaggtgactgctggagagaggccacagcctgcggagagggagcccacacagagcccatgccctacctcagttgaggggtctttgagaattttgagaaatcaaggcagctagaattgcaaggcaggatacaagagagccccatggagaggagagccgcacccagaaccaagctagaggtttacggaggtgtcctctggaatcttcagctgagtactgacaggtgcatgcatgtgagaaaccaccacccaagacagaggttgagttacctaccagtgagcaggcgggacagtctcaggagagtcagtcctctcacaaagccaggaatagttcgtgttcaaaccaattagagtagaaaatcctcttcagacatggggcattgggtagtgtcctcagaaaggtattgcctcactagtgagtcaaaattaattctagactaaaggctgccctcttccctgttaacaaagctaaaggctcacctccaaagaaccacagtttctttctaggtaacttaattgtgcctccagaacaaagctttagaacaggggtcagcaaaggacagcccacaggcccgactatcctgctgcctgtatttgtacagccttgaagctaacaatat--tttttacatttttaaatcattgaaaaaaatcaaaagaagagtatttttccccgttacgtgtggaaattgtcttcaaatttcagtgtctttaagtcaaattttactggaacacaggcaggctaattcatttgagtatattctctggttgctttcagctactatggctgagttgaatagctgtgagagagacctcatggtctgcaagcctacagtgttcactctctcgctctttacagaaaatgtttcccgac-cctgttctagctgaagtgtggctctcccctgagttttgcctttcccacagtc--tttaagcagtggctgtgctttctttcttttcctccccttgtatgctgggcctggtgacttggtggttgtcctcctgactcatcactgctttaacccattcttcctcctcct-ctctaactaccccccc---cagccccacctctcaatgtcctattgtcagagcagatcattgctcctgggagctcctgaaccctgggccattcttacacatttatctataatgttaattcctagcccactgtctccctctccaat-ctactcctgtcttaattctcaacacggcagccagagtgatcctaatgaaatgaagccagaacatatttccctccttagaaccctccagtggctctctgattcattcagcctaagagccagcttcctcgccatggtctatgaggctctgctgatgtagctcctctcttcc---ctgtcttcct---
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138916753 1524 + 157549271 taaTGTGAGActtttggccaagatggagcaaaaagcaccagctttataccttaaacaccttaaaaattggacaaaatctatgaaacaactatatgagacattggtatgagacaagcagcataggacagtgagtccagagagcaaggaatcgaacacggtgagcctgatgcttgccccaggtgaccgctggagagaggccacagcctacagagagggagcccacacaaagcccatgccccacgtcagttgaggggtctttgagaattttgagaaatcaaggcagctagaattgcaaggcaggatacaagagagccacacggagaggaaagctgcacccagaaccaagctagaggtttacggaggtttcctctggaatcttcagctgagtactgacaggtgcatgcatgtgagaaaccaccacccgagatggaggttgagttacctaccagtgagcaggcgggacagcctcaggagagtcggtcctctcacaaagccaggaatagtttgtgttcaaaccaattagagtagaaaatcctcttcagatatggggcattgggtagtgtcctcagaaaggtatcgcctcactagtgagtcaaaattaattctagactaaaggatgccctgttccctgttaacaaagctaaaggctcacctccagagaaccacagtttctttataggtaacttaattgtgcctccagaacaaagctttagaacaggggtcagcaaaggacagcccacaggcctgactatcttgctgcctgtatttgtacagccttgaagctaacaatgt--tttttacatttttaaatcattgaaaaaaatcaaaagaagagtattttt--ctgttacgtgtagaaattgtcttcaaatttcagtgtctgtaagtcaaattttactggaacacaggcacgctaattcatttgagtgtggtctctggttgctttcagccaccatggctgagttgaatagctgtgagagagacctcatggtctgcaggcctacagtgttcactctctggctctttacagaaaatgtttcccaac-cctgttctagctgaagtgtggctctcccctgggctctgcctttcccacagcc--tttaagcagtggctgtgttttctttcttttcctccccttgtatgctgggcctggtgacttggtggctgtcctcctgactcgtcaccgctttaacccattcttcctcctcct-ctctaactagccccc----cagccccacctctcaatgtcctattgtcagagcagatcaTTGCTCCTGGGAGCTCCTGAaccctgggccactcttacacatttatctataatgttaattcctagcccactgtctccctctccaatactactcttgtcttaattctcaacacggcagccagagtgatcctattgaaatgaagccagaacatatttccctccttagaaccctccagtggctctctgattcattcagcctaaaagccagcttcctcaccatggtctatgaggctctgctgatgtagctcctctcttcc---ctgtcttcct---
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93053921 1512 + 110113093 taaTGTGAGActtttggccaagatgtagcaaaaagcaccagctttataccttaaacaccttaaaaattggacaaaatctatgaaacaactatatgagacattggtatgagacaagcagcataggacagtgagtccagagagcaaggaattgaacacggtgagcctgacgcttgccccaggtgactgctggagagaggccacagcctgttgagagggagcccacacagagcccatgccccacctcagttgaggggtctttgagaattttgagaaatcaaggcagctagaattgcaaggcaggatacaagagagccacatggagaggagagctgcacccagaaccaagctagaggtttacggaggtttcctctggaatcttcagctgagtactgacaggtgcatgcatgtgagaaaccaccacccaagatgcaggttgagt----taccagtgagcaggcgggacagtctcaggagagtcagtcctctcacaaagccaggaatagttcgtgttcaaaccaattagagtagaaaatccacttcagacatggggcattgggtagtgtcctcggaaaggtattgcctcactagtgagtcaaaattaattctagactaaaggctgccctgttccctgttaacaaagccaaaggctcacctccaaagaaccacagtttctttataggtaacttaattgtgcctccagaacaaagctttagaacaggggtcagcaaaggacaacccacaggcccgactatcctgctgcctgtatttgtacagccttgaagctaacaatgt--tttttacatttttaaatcattgaaaaaaatcaaaagaagattattttt--ctgttacgtgtagaaattgtcttcaaatttcagtgtctttaagtcaaattttactggaacacaggcatgctaattcatttgagtgtagtctctggttgctttcagccaccatggctgagttgaatagctgtgagagagacctcgtggtctgcaagcctacagtgttcactctctggctctttacagaaaatgtttcccgac-tctgttctagctgaagcgtggctctcccctgggcgctgcctttcccacagcc--tttaagcagtggctgtgttttctttcttttcctccccttgtatgctgggcctggtgacttggtggttg---tcctgactcgtcactgctttaacccattcttcctcctcct-ctctaactaccccc-----cagccctacctctcaatgtcctgttgtcagagcagatcattgctcctgggagctcctgaaccctggatcattcttacacatttatctataatgttaattcctagcccactgtctccctctccaatactactcctgtcttaattctcaacacagcagccagagtgatcctactgaaatgaagccagaacatatttccctccttagaaccctccagtgg----ctgattcattcagcctaaaagccagcttcctcgccatggtctatgaggctctgctgatgtagctcctctcttcc---tttttttttt---
i nomLeu3.chr13            C 0 I 310
s rheMac3.chr3             180952547 1502 + 198365852 taaTGTGAGActtttggccaagatggagcaaaaagcaccagctttataccttaaacaccttaaacattagacaaaatctatgaaacaactgtatgagacattggtatgagacaagcagcataggtcagtgagtccagagagcagggagtcaaactcggtgagcctgacgcttgccccagctgactgctggagagaggccactgcctgtggagagggagcccacac--agcccatggcccccctcggttgaggggcctttgagaattctgagaaatcaaggcagctagaattgcaaggcaggattcaagaaaaccacatggagaggagagccgcacccagaaccaagctagaagtttatggaggtttcctctggaatcttcagctgaatactgacaggtgcatgcatgtgggaaaccaccacctgagatggaggttgagt----tagcaatgagcaggcgggacagtctcgggagcgtcagtcttctcacaaagccaggaatagttcgtgttcgaaccaattagagtagaaaatcctcttcagacatggggcattgggtaatgtcctcagaaaggtatcgcctcactagtgagtcaaaattaattctagactaaaggctgccctgttccctgttaacaaagctaaaggctcgcctccaaagaaccacagtttctttataggtaacttaattgtgcttccagaacaaagctttagaacaggggtcagcaaaggacagcccacaggcccgaatatcctgctg-ctgtatttatacagccttgaagctaacaatgt--tttttacatttttaaatcattgaaaaaaatc-----aagagtattttt--ctgttacgtgtggaaattgtctttaaatttcagtgtctgtaagtcaaattttactggaacacaagcacgctaattcat----------tctctggctgctttcagccaccatggctgggttgaatagctgtgagagagacctcatggtctgcaacccttcagtgttcactctctggctctttaccgaaaatgtttcccgac-cctgttctagctgaagcgtggctctcccctggg--ctgtctttcccacagcc--tttaagcagtggctgtgttttctttcttttcctccccttgtatgctgggcctggtgac-tggtggttgtcctcctgtctcgtcactgctttaacccattcttcctcctcctcctctaactctccccc----cagccccacctctcagtgtcctattgtcagagcagatcattgctcctgggagctcctgaaccctgggccattcttacacatttatctataatgttaattcctagcctactccctccctctgcaatactactcctgtcttaattctcaacacggcagccagagtgatcctattgaaatgaagccagaacatatttccctccttagaactctccagtggctctctgcttcattcagcctaaaagccagcttcctcaccatggtctatgaggctctgctgatgtagctcctctcttccct-ctgtcttcct---
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174698444 1503 + 192294377 taaTGTGAGActtttggccaagatggagc-aaaagcaccagctttataccttaaacaccttaaacattagacaaaatctatgaaacaactgtatgagacattggtatgagacaagcagcataggtcagtgagtccagagagcagggagtcaaacacggtgagcctgacgcttgccccagctgactgctggagagaggccactgcctgtggagagggagcccacac--agcccatggcccccctcggttgaggggcctttgagaattctgagaaatcaaggcagctagaattgcaaggcaggattcaagaaaaccacatggagaggagagccgcacccagaaccaagctagaagtttatggaggtttcctctggaatcttcagctgaatactgacaggtgcatgcatgtgggaaaccaccacctgagatggaggttgagt----tagcaatgagcaggcgggacagtctcgggagcgtcagtcttctcacaaagccaggaatagtttgtgttcgaaccaattagagtagaaaatcctcttcagacatggggcattgggtaatgtcctcagaaaggtatcgcctcactagtgagtcaaaattaattctagactaaaggctgccctgttccctgttaacaaagctaaaggctcgcctccaaagaaccacagtttctttataggtaacttaattgtgcttccagaacaaagctttagaacaggggtcagcaaaggacagcccacaggcccgaatatcctgctg-ctgtatttatacagccttgaagctaacaatgt--tttttacatttttaaatcattgaaaaaaatc-----aagagtattttt--ctgttacgtgtggaaattgtctttaaatttcagtgtctgtaagtcaaattttactggaacacaagcacgctaattcat----------tctctggctgctttcagccaccatggctgggttgaatagctgtgagagagacctcatggtctgcaagccttcagtgttcactctctggctctttaccgaaaatgtttcccgac-cctgttctagctgaagcgtggctctcccctgggctctgtctttcccacagcc--tttgagcagtggctgtgttttctttcttttcctccccttgtatgctgggcctggtgac-tggtggttgtcctcctgtctcgtcactgctttaacccattcttcctcctcctcctctaactctccccc----cagccccacctctcagtgtcctattgtcagagcagatcattgctcctgggagctcctgaaccctgggccattcttacacatttatctataatgttaattcctagcccactgtctccctctgcaatactactcctgtcttaattctcaacacggcagccagagtgatcctattgaaatgaagccagaacatatttccctccttagaaccctccagtggctctctgcttcattcagcctaaaagccagcttcctcaccatggtctatgaggctctgctgatgtagctcctctcttccct-ctgtcttcct---
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163363905 1504 + 180432695 taATGTGAGACTTTTGGCCAAGATGGAGCAAAAAGCACCAGCTTTATACCTTAAACACCTTAAACATTAGACAAAATCTATGAAAAAACTGTATGAGACATTGGTATGAGACAAGCAGCATAGGTCAGTGAGTCCAGAGAGCAGGGAGTCAAACACGGTGAGCCTGACGCTTGCCCCAGCAGACTGCTGGAGAGAGGCCACTGCCTGTGGAGAGGGAGCCCACAC--AGCCAATGGCCCCCCTCGGTTGAGGGGCCTTTGAGAATTCTGAGAAATCAAGGCAGCTAGAATTGCAAGGCAGGATTCAAGAAAACCACATGGAGAGGAGAGCCACACCCAGAACCAAGCTAGAAGTTTATGGAGGTTTCCTCTGGAGTCTTCAGCTGAGTACTGACAGGTGCATGCATGTGAGAAACCACCACTTGAGATGGAGGTTGAGT----TAGCAATGAGCAGACGGGACAGTCTCCGGAGCGTCAGTCCTCTCACAAAGCCAGGAATAGTTCGTGTTCGAACCAATTAGAGTAGAAAATCCTCTTCAGACATGGGGCATTGGGTAATGTCCTCAGAAAGGTATCACCTCACTAGTGAGTCAAAATTAATTCTAGACTAAAGGCTGCCCTGTTCCCTGTTAACAAAGCTAAAGGCTCATCTCCAAAgaaccacagtttctttatagGTAACTTAATTGTGCTCCCAGAACAAAGCTTTAGAACAGGGGTCAGCAAAGGACAGCCCACAGGCCCGAATGGCCTGCTGCCTGTATTTATACAGCCTTGAAGCTaacaatat--tttttacatttttaaatcattgaaaaaaaCC-----AAGAGTATTTTT--CTCTTACGTGTGGAAATTGtcttcaaatttcagtgtctgtAAGGCAAATTTTACTGGAACACAAGCACGCTAATTcat----------tctctggctgctttcagcCACCATGGCTGGGTTGAATAGCTGTGAGAGAGACCTCATGGTCTGCAAGCCTTCAGTGTTCACTCTCTGGCTCTTTACCGAAAATGTTTCCCAAC-CCTGTTCTAGCTGAAGCGTGGCTCTCCCCTGGGCTCTGTCTTTCCCACAGCC--TTTAAGCAGtggctgtgttttctttcttttcctccccttgTATGCTGGGCCTGGTGAC-TGGTGGTTGTCCTCCTGTCTCGTCACTGCTTTAAcccattcttcctcctcct-ctctaactctccccc----cagccccacctctcagTGTCTTATTGTCAGAGCAGATCATTGCTCCTGGGAGCTCCTGAACCCTGGGCCATTCTTACACATTTATCTAGAAAGTTAATTCCTAGCCCACTGTCTCCCTCTCCAATACTACTCCTGTCTTAATTCTCAACACGGCAGCCAGAGTGATCCTATTGAAATGAAGCCAGAACGTATTTCCCTCCttaaaaccctccagtggctcTCTGCTTCATTCAGCCTAAATGCCAGCTTCCTCACCATGGTCTATGAGGCTCTGCTGATGTAgctcctctcttccct-ctgtcTTCCT---
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110396351 1514 + 127223203 taaTGTGAGActtttggccaagatggagcaaaaagcaccagctttataccttaagcaccttaaacattagacaaaatctatgaaacaactgtatgagacattggtatgagacaagcagcataggtcagtgagtccagagagcagggagtcaaacacggtgagcctggcgcttgccccagctgactgctggagagaggccactgcctgtggagagggagcccacac--agcccatggcccccctcggttgaggggcctttgagaattctgagaaatcaaggcagctagaattgcaaggcaggattcaagaaaaccacatggagaggagacccgcacccagaaccaagctagaagtttatggaggtttcctctggaatcttcagctgagtactgacaggtacatgcatgtgagaaaccaccacctgagatggaggttgagt----tagcaatgagcaggcgggacagtctcgggagtgtcagtcctctcataaagccaggaatagttcatgttcgaaccacttagagtagaaaatcctcttcagacatggggcattgggtaatgtcctcagaaaggtatcgcctcactagtgagtcaaaattaattctagactaaaggttgccctgttccctgttaacaaagctaaaggctcacctccaaagaaccacagtttctttataggtaacttaattgtgcttccagaacaaagctttagaacagggatcagcaaaggacagcccacaggcccgaatatcctgctgcctgtatttataccgccttgaagctaacaatgt--tttttacatttttaaatcattgaaaaaaatc-----aagagtattttt--ctgttacgtgtggaaattgtcttcaaatttcagtgtctgtaagtcaaattttactggaacacaagcacactaattcatttgagtgcagtctctggctgctttcagccaccatggctgggttgaatagctgtgaaagagacctcatggtctgcaagccttcagtgttcactctctggctctttaccgaaaatgtttcccgac-cctgttctagctgaagcgtggctctcccctgggctctgtctttcccacagcc--tttaagcagtggctgtgttttctttcttttcctccccttgtatgctgggcctggtgac-tggtggttgtcctcctgcctcgtcactgctttaacccattcttcctcctcct-ctctaactctccccc----cagccccacctctcagtgtcctattgtcagagcagatcattgctcctgggagctcctgaaccctgggccattcttacacatttatctataatgttaattcgtagcccactgtctccctctgcaatactactcctgtcttaattctcaacatggcagccagagtgatcctactgaaatgaagccagaacatatttccctccttagaaccctccagtggctctctgcttcattcagcctaaaagccagcttcctcaccatggtctatgaggctctgctgatgtagctcctctcttccct-ctgtcttcct---
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40390105 1257 + 149736546 --ATGTGAGACTATtggccaagatatag-agcaagcaattacttta---ccttcatatcttaaacactgaacaaaatctgtgaagttactatg---------ggcaagaaataagtagtatatgacagtggtcccagagagaaggcactcagataaggttggccttgttcctgtcctagcttcctgctt--gagagGCCACAGC--ATAGACATGGA-CTTACCAGGAGTCCATGGTCT-CTTCTGGGAAGGCATCTTTGAGAATTCAGGGGCATCTGGGCAATAAGAATT-CAGAGCAAAATAAAAGAAAACTGCCTCGGAGTGAG--------CCAGGAATTGACAAGA--TCCACGGAGA--TCGGTTGG---CTTTGTCTGTATCTTCactgatatgtgtatgtgagaaactatc---tgagttgaagaaagaac-tcctcccaagaaacaggct---cagtcctgggaaatttactcacatcacaggacca-----aacgtgtgttcccacaagataaaggcgaaaattgttgtcaggcctggggtgttg------atactttaaaaagcattttctccatatgga--caaaattagtct--gattccaggcttatatttcctctacca--aaatctggaggctaa--tccacagactcgacatttc----caggtaacctagccgtgcctcta-aacaaagc-tgaggaaAGCTGTCAGCAGAGGATAA-CCATAGACCCAACTGGCCAGCTG---------------CCTTCAAGCTAG-GATGTTATTTTAATAAGTTAGAATCAC--ACAGAATTC-----AA------TTTT--CTGT-----------------------------------------GGACTTTAGTGGAACACAAACATGCTACCATAT----------------------TATAGCACCCA--GCAGAATCTAATGGCCATCAGAGAAACTTCA---------------CATAATT--CTCTCTGGTTCTTAAAAGAAAATACATGTTGATGTCCATTCTCACTGGAGCATGGCTTTGC--------------TGCCCACTGCAAGTTTAAACA-TGCCCG-----------TTTCCTTTCCCTTATCTCCTGGGCATTAGAAC--------------------TAGTCACTAGTT------AGTTttcagcctctt-cctcacctcttc-------caatgcca-----------------------------------tcctggcatctactgagcctt-cactgctccttctcatttctctgtaatgtcttgtcctggctcactgcctccctctgcagt--tagacctgtctcaattcttagcacagcaggc--agtgaccctattacaaacaagccagaac--atttccctccttagagccttccactgcctctccatttcactcaacctaaaagacaccttccttaaagtggtctccagagccctacCCATACAGATGCACTCTTCCCCACTATAGTCATCCA
i mm10.chr6                C 0 C 0
e canFam3.chr16             52065128  797 -  59632846 I
e calJac3.chr8              23742076 2882 - 128169293 I

a score=1883.000000
s hg38.chr7_GL383534v2_alt     13976 1 +    119183 c
s panTro4.chr7             143114223 1 + 161824586 c
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138918277 1 + 157549271 c
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             180954049 1 + 198365852 c
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174699947 1 + 192294377 c
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163365409 1 + 180432695 C
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110397865 1 + 127223203 c
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40391362 1 + 149736546 T
i mm10.chr6                C 0 C 0
e canFam3.chr16             52065128 797 -  59632846 I
e calJac3.chr8              23742076 2882 - 128169293 I
e nomLeu3.chr13             93055433 310 + 110113093 I

a score=1087470.000000
s hg38.chr7_GL383534v2_alt     13977 468 +    119183 acttgttgcccctgtcattcgctctgctccagctacacgggcttccttgctgttccctgctgtcagacatgttcccccagcaccacctgaaggcctccgccccagtagttccccttgtgtggattgctcatccccGG-ATTaggggttctcaaagtccagttctcagatcagc-acatcagtatcacatggaagttgctcgagatgaaaattcatgggcctcaccccagatctactgaaccagaaacttgggatggggccagagtctgagttAAAAAAAAATTATTTTTATTGATTGATTGAttgagacggagtttgactctt-gtcacccaggctggagtgc------aatcgtgcgatattggctcactgcaatctctgcctcctgggttctagcgattctcccgcctcagcctcccgagtagctgggattacaggcgcccgccaccacacccggctagtatttgtacttttagt
s panTro4.chr7             143114224 468 + 161824586 acttgttgcccctgtcattcgctctgctccagctacacgggcttccttgctgttccctgctgtcagacatgttcccccagcaccacctgaaggcctccgccccagtagttccccttgtgtggattgctcatccccGG-ATTaggggttctcaaagtccagttctcagatcagc-acatcagtatcacatggaagttgctcgagatgaaaattcatgggcctcaccccagatctactgaaccagaaacttgggatggggccagagtctgagttAAAAAAAAATTATTTTTATTGATTGATTGAttgagacggagtttcactctt-gtcacccaggctggagtgc------aatagtgcgatattggctcactgcaatctctccctcccgggttctagggattctcctgcctcagcctcccgagtagctgggattacaggcgcctgccaccacacccggctagtatttgtacttttagt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138918278 465 + 157549271 acttgttgtccctgtcactcgctctgctccagccacacgggcttccttgctgttccctgctgtcagacatgttcccccaccaccacctgaaggcctctgccccagtagttccccttgtgtggattgctcatccccAG-ATTaggggttctcaaagtccagcccttagatcagc-acatcagtatcacatggaagttgctcgagatgaaaattcatgggcctcaccccagatctactgaaccagaaacttgggatggggccagagtctgagtt-AAAAAAAATTATTttgattgattgattgattgagatggagtttca--ctt-gttacccaggctggagtgc------aatagcgcgatattggctcactgcaatctctgcctcctgggttctagcgattctcctgcctcagcctcccaagtagctgggattacaggcacctgccaccacacccggctaatatttgtacttttagt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93055743 461 + 110113093 acttgttgtccctgtcactcgctctgctccagccacacgggcttccttgctgttccctgccgtcagacatgttcccccaccatcacctgaaggcctctgccccagtagttccccttgtgtggactgctcatccccGG-ATTaggggttctcaaagtctggtccttagatcagc-acatcagtgtcacatggaagttgctcgagatgaaaattcatgggcctcaccccagatctactgaaccagaaacttgggatggggccagagtctgagtt-taaaaaaATTATTTTT----ATTGATTGAttgagatggagtttca--ctc-gtcacccaggctggagtgc------aatagcgtgatattggctcactgcaatctctgcctcccgggttctagcaattctcctgcctcagcctcccgagtagctgggattacaggcgcctgccaccacacctggctaatatttgtacttttagt
i nomLeu3.chr13            I 310 C 0
s rheMac3.chr3             180954050 455 + 198365852 -actgttgtccctgtcactcactctgctccagccacatgggcttccttgctgttctgtgctgtcagacatgttcccccaccaccacctgaaggcctctgccccagtaattacccttgcatggattgctcatccGCGG-ATTaggggttctcaaagtcccatccttagatcagc-acatcagtatcgcatggaagttgctggagatgaaaattcatgggcctcaccccagatctactgaaccagaaacttgggacggggT--GAGTCTGAGTT------AAAATATTTTT----ATTGATTGAttgagacggagtttcactctt-ggcacccaggctggagtac------aatggcgcgatattggctcactgcaatctccgcctcccaggttctagcgattctcctgcctcagcctccctagtagctgggattacaggcacctgccaccatacccggctaatatttgtacttttagt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174699948 455 + 192294377 -actgttgtccctgtcactcactctgctccagccacatgggcttccttgctgttctgtgctgtcagacatgttcccccaccaccacctgaaggcctctgccccagtaattacccttgcatggattgctcatccGCGG-ATTaggggttctcaaagtcccatccttagatcagc-acatcagtatcgcatggaagttgctggagatgaaaattcatgggcctcaccccagatctactgaaccagaaacttgggacggggT--GAGTCTGAGTT------AAAATATTTTT----ATTGATTGAttgagacggagtttcactctt-ggcacccaggctggagtac------aatggcgcgatattggctcactgcaatctccgcctcccaggttctagcgattctcctgcctcagcctccctagtagctgggattacaggcacctgccaccatacccggctaatatttgtacttttagt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163365410 465 + 180432695 -ACTGTTGTCCCTGTCACTcgctctgctccagccacacggGCTTCCTTGCTGTTCTGTGCTGTCAGACATGTTCCCCCACCACCGCCTGAAGGCCTCTGCCCCAGTAATTACCCTTGCATGGATTCCTCATCCATGG-ATTAGGGGTTCTCAAAGTCCCATCCTTAGATCAAC-ATATCAGTATCACATGGAAGTTGCTGGAGATGAAAATTCATGGGCCTCACCCCAGATCTACTGAACCAGAAACTTGGGATGGGGT--GAgtctgagtttaaaaaaaaatatttttattgattgattgattgagacggagtttcactctt-gtcacccaggctggagtac------aatggcgcgatattggctcactgcaatctccgcctcccaggttctagcgattctcctgcctcagcctcctgagtagctgggattacacgcacctgccaccataccctgctaatatttgtacttttagt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110397866 466 + 127223203 -actgtcgtccctgtcactcactctgctccagccacatgggcttccttgctgttttgtgctgtcagacatgttcccccaccaccgcctgaaggcctctgccccagtaattccccttgcatggattgctcatccGCAG-ATTaggggttctcaaagtcccatccttagatcagc-acatcactatcacatggaagttgctggagatgaaaattcatgggcctcaccccagatctactgaaccagaaacttgggatggggccagagtctgagtt-AAAAAAAAATATTTTTATTGATTGATTCAttgagacggagtttcactctt-ggcacccaggctggagtac------aatggcgcgatattggctcactgcaatctccgcctcccaggttctagcgattctcctgcctcagcctcccgagtagctgggattacaggcacctgccaccatacccggctaatatttgtacttttaat
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40391363 392 + 149736546 TTTTCTTTCCCCTACCACTCAGTCTG-------TACA-----------------------TTTCAGGGA--------CAACCCTACCTAAAG----------------TTCCCTTTGTATGTTTGGCTTGTCCCTAGAAATagtgttttttaaagtatgatctttagattggcaacatcag-attaccaggaaatggtttgaaataaaaattc-ttagctttacaacagtcctactgagcta-actctgagaatgatagcaggtactgtttt----ttaaATTAACTTT--TAATCAACAAATACAGACAGAATCCTGATGTTAATCAACCCTCCAGGGATACCTGTTAAACAGTGAAA---------ACTG----CTTCCCCTGATAAGT----GTGTTCCTTCCTTTCTGACCTCCTGGGCTTCTTTTGAT-CAGTCACCTTCT----CACCTGGTCTCTCTTTAAAATATTAGT
i mm10.chr6                C 0 I 158
e canFam3.chr16             52065128 797 -  59632846 I
e calJac3.chr8              23742076 2882 - 128169293 I

a score=290213.000000
s hg38.chr7_GL383534v2_alt     14445 123 +    119183 agagacggggtttcaccacgttggccgggctggtctcgaactcctgacctcggctgatccgcccgcctcggcctcccaaagtgctgagatcacaggcgtgagccaccgcgcctggccAAAAAT
s panTro4.chr7             143114692 123 + 161824586 agagacggggtttcaccacgttggccaggctggtctcgaactcctgacctcagctgatccgcccgcctcagcctcccaaagtgctgagatcacaggtgtgagccactgcgcctggccAAAAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138918743 123 + 157549271 agagacagggtttcaccacattagccaggctggtcttgaactcctgacctcagctgatccgcccgcctcggcctcccaaagtgctgagatcacaggtgtgagccactgcgcctggccAAAAAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93056204 123 + 110113093 agagatggggtttcaccatgttggccaagctggtctcgaactcctgacctcagctgatcggcccacctcggcctcccaaagtgctgagatcacaggtgtgagccactgcgcctggccAAAAAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180954505 121 + 198365852 agagacggggtttcaccgcgttggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggatcacaggcgtgagccactgcacctggccAAAA--
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174700403 121 + 192294377 agagacggggtttcaccgcgttggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggatcacaggcgtgagccactgcacctggccAAAA--
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163365875 123 + 180432695 agagacggggtttcactgtgttggccaggctggtctcgaactcctgacctcaggtgatccacccgccttggcctcccaaagtgctgggatcacaggcgtgagccactgcacctggccaaaaat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110398332 123 + 127223203 agagatggggtttcactgcattggccaggctggtctcaaactcctgacctcaggtgatccacccgccttggcctcccaaagtgctgggatcacaggtgtgagccactgcacctggccAAAAAT
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40391755 158 + 149736546 I
e canFam3.chr16             52065128 797 -  59632846 I
e calJac3.chr8              23742076 2882 - 128169293 I

a score=56708.000000
s hg38.chr7_GL383534v2_alt     14568 28 +    119183 T-ATTTAT-TTTTTAGTTGACAAACAAAAA
s panTro4.chr7             143114815 28 + 161824586 T-ATTTAT-TTTTTAGTTGACAAACAAAAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138918866 28 + 157549271 T-ATTTAT-TTTTTAGTTGACAAACAAAAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93056327 22 + 110113093 T-A-------TTTTAGTTGACAAACAAAAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180954626 27 + 198365852 --ATTTAT-TTTTTAGTTGACAAAGAAAAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174700524 27 + 192294377 --ATTTAT-TTTTTAGTTGACAAAGAAAAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163365998 29 + 180432695 ttatttat-tttttagttgacaAAGAGAAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110398455 29 + 127223203 TTATTTAT-TTTTTAGTTGACAAAGAAAAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23744958 26 - 128169293 -tatatatatttttaGTTG---AACAAAAA
i calJac3.chr8             I 2882 C 0
e mm10.chr6                 40391755 158 + 149736546 I
e canFam3.chr16             52065128 797 -  59632846 I

a score=404795.000000
s hg38.chr7_GL383534v2_alt     14596 117 +    119183 CCAGAGTCTGAATGTTACC-TGCTCTACA-GTGGCACCTGCTAAAGTTTGAGAACCACTGCCCTGGGTGGCCACATCGCCGGCTCCCTCACCTCCTTCAGGCCTCCTCTCCAAG----GCTTC
s panTro4.chr7             143114843 117 + 161824586 CCAGAGTCTGAATGTTACC-TGCTCTACA-GTGACACTTGCTAAAGTTTGAGAACCACTGccctggatggccacatcactgactccctcacctccttcaggtctcttctccaag----gcttc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138918894 117 + 157549271 CCAGAGTCTGAGTGTTACC-TGCTGTACA-Gtgacacttgctaaagtttgagaaccactgccctggatggtcacatcgctgactccctcacctccttcaggtctcttctccaag----gcttc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93056349 117 + 110113093 CCAGAGTCTGAGTGTTACC-TGCTCTACA-GTGACACTTGCTGAAGTTTGAGAACCACTGccctggatggccaaatcgctgactccctcacctccttcaggtctcttctccaag----gcttc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180954653 117 + 198365852 CCAGAGTCTGAGTGTTACC-TGCTCTCCA-GTGACACTTGCTAAACTTTGAGAACCACTGctctggatgtccacatcgctgactccctcatctccttcaggtctcttttccaag----gcttc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174700551 117 + 192294377 CCAGAGTCTGAGTGTTACC-TGCTCTCCA-GTGACACTTGCTAAACTTTGAGAACCACTGctctggatgtccacatcgctgactccctcatctccttcaggtctcttttccaag----gcttc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163366027 117 + 180432695 CCAGAGTCTGAGTGTTGCC-TGCTCTCCA-GTGACActtgctaaagtttgagaaccactgctctggaTGTCCACATCGCtgactccctcacctccttcaggtctcTTTTCCAAG----GCTTC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110398484 117 + 127223203 CCAGAGTCTGAGTGTTGCC-TGCTCTCCA-GTGACACTTGCCAAACTTTGAGAACCACTGCTGTGgatgtccacatcgctgactccctcatctccttcaggtctcttttccaag----gcttc
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23744984 118 - 128169293 ccagattctgagtgttaccatgctctcca-gtgacacttgctaaagtttgagaaccactgccctggatgtccacatcgctgactccctcacttccttcaggcctctgctcgcag----gcttc
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52065925 123 -  59632846 ccagggtctgagttttaacaagccctccaggtgacacttgctaaagtttgggaaccgcAGccctggacatgcacattgctaattcccttacctccttcaggtgtctgctcagagcttagtttc
i canFam3.chr16            I 797 C 0
e mm10.chr6                 40391755 158 + 149736546 I

a score=2287167.000000
s hg38.chr7_GL383534v2_alt     14713 701 +    119183 ----------TCCACGGGACC---CCCTTTTTCATAAC-ACAGCCACTGCCATCAGCGCCACCTCATGTTCCTTGCTCTGCTTCTTTGATCTTATTTTCTAATAAACTCTAATATAGTTGTGGCATCCTTAT-----------------------------CTTCTAACAGAGTTTATAATTTAC-------------------------------------------------T--------ATGatcca---------------tctattccctccagtctctacagtagaaagtaagttctttgtaggcagaaagtcatgtgggttttgttcattggtgtaacccaa--gctcc---gtgggttcatggtgcatgactggcactcAGTAAGTAGTTAAATAAAAGGTGAACTT---TCAA--------AGTCATC-------CACTTTATGTTTTGTAATTCTTAGTTGAGAGTT--CTTTGTTA------GTTACCCTTTAATCTTAGGCAAAGGCTTTAAGGCTCTCAGAGGCCTCAA------ATCCTGGGCCTGAACATTTTGAACCTACCCCAAAAGAAACAAGACCTCTATTTGAAGCTGACATAGAAGTTGTGGGATTGATTTACAGAGGGCTAGGTTTGTATGGCTAGTCACTGACTGGTAGCAAATTATGGGAACTGGTCCAAGAACCAAGTCTG-TTTTGATAGCCATTTTGTCGTAGCTCAAATCATCCAGAGCTTTCTGTGGCTGGAAATGGAAAGTTTT-TAAACATTACCATAGAATAAACGGATTGCTGTTTTCCAACTCTGGTTGCACACCAAATTTGTATGTAGAGCA-TTAAAGA-----------------------------------
s panTro4.chr7             143114960 705 + 161824586 ----------tccacgggacc---cccttttttgtaac-acagccactgccatcagcgccacctcatgttccttgctctgcttctttgatcttattttctaataaactctaatatagttgtggcatccttat-----------------------------cttctaacagagtttataatttac-------------------------------------------------tgttttactatgatcga---------------tctattccctccagtctctacagtagaaagtaagttctttgtagacagaaagtcatgtgggttttgttcattggtgtaacccaa--gctcc---gtgggttcatggtgcatgactggcactcagtaagtagttaaataaaAGGTGAACTT---TCAA--------AGTCATC-------CACTTTATGTTTTGTAATTCTTAGTTGAGAGTT------GTTA------GTTACCCTTTAATCTTAGGCAAAGGCTTTAAGGCTCTCAGAGGCCTCAA------ATCCTGGGCCTGAACATTTTGAACCTACCCCAAAAGAAACAAGACCTCTATTTGAAGCTGACATAGAAGTTGTGGGATTGATTTACAGAGGGCTAGGTTTGTATGGCTAGTCACGGACTGGTAGCAAATTATGGGAACTGGTCCAAGAACCAAGTCTG-TTTTGATAGCCATTTTGTCGTAGCTCAAATCATCCAGAGCTTTCTGTGGCTGGAAATGGAAAGTTTT-TAAACATTACCATAGAATAAACGGATTGCTGTTTTCCAGCTCTGGTTGCACACCAAATTTGTATGTAGAGCA-TTAAAGA-----------------------------------
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138919011 695 + 157549271 ----------tccacgggacc---cccttttttataat-gcagccactgccatcagcgccacctcatgttccttgctctgcttctttgatcttattttctaataaactctaatatagttgtggcatccttat-----------------------------cttctaacagagtttataatttac-------------------------------------------------tgttttactatgatcga---------------tctattccctcccgtctctacagtagaaaataagttctttgtaggcagaaattcatgtgggttttgttcattggtgtaacccaa--gctcc---atgggttcatggtgcatgattggcactcagtaagtagttaaataaaAGGTGAACTT---TCAA--------AGTCATC-------CACTTTATGTTTTGTAATTCTTAGTTGAGAGTT--CTTTGTTA------GTTACCCTTTAATCTTAGGCAAAGGCTTTAAGGCTCTCAGAGGCCTCAA------ATCCTGGGCCTGAACATTTTGAACCTACCCCAAAAGAAACAAGACCTCTATTTGAGGCTGACATAGAAGTTGTAGGATTGATTTACAGAGGGCTAGGTTTGTATGGCTAGTCACTGACTGGTAGCAAATTATGGGAAGTGGTCCAAGAACCAAGTCTGTTTTTAATAGCCATTTTGTCATAGCTGAAATCATCCAGAGCTTTCCGTGGCTGG----------------AAACATTACCATAGAATAAATGGATTGCtgtttttcaactctggttgcacaccaaatttgtacgtagagca-ttaaagg-----------------------------------
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93056466 709 + 110113093 ----------tccacgggacc---cccttttttataat-gcagccactgccatcagcgccacctcatgttccttgctctgcttctttgatcttattttctaatgaactctaatatagttttggcatccttat-----------------------------cttctaacagagtttataatttac-------------------------------------------------tgttttactatgatcga---------------tctattccctccagtctctacagtagaaagtaagttctttgtaggcagaaattcatgtgggttttgttcattggcgtaacccaa--gctcc---gtgggttcatggtgcatgattggcactcagtaagtagttaaataaaAGGTGAACTT---TCAA--------AGTCATC-------CACTTTAAGTTTTGTAATTCTTAGTTGACAGTT--CTTTGTTA------GTTACCCTTTAATCTTAGGCAAAGGCTTTAAGGCTCTCAGAGGCCTCAA------ATCCTGGGCCTGAAGATCTTGAACCTACCCCAAAAGAAACAAGACCTCTATTTGAAGCTGACATAGAAGTTGTGGGATTGATTTACAGAGGGCTAGGTTTGTATGGCTAGTCACTGACTGATAGCAAATTATGGGAAGTGGTCCAAGAACCAAGTCTG-TTTTTATAGCCATTTTGTCGTAGCTCAAATCATCCAGAGCTTTCTGTGGCTGGAAATGGAAAGTTTT-TAAACATTACCATAGAATAAATGGATTGCTGTTTTTCAACTCTGGTTACACACCCAATTTGTATGTAGAGCA-TTAAAGG-----------------------------------
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180954770 709 + 198365852 ----------tccatggaacc---ccctttt--ataat-gcagccactgccatcagcgccacctcatgttcctcgctctgcttctttgttccttttttctaatatactctgaaatacttgtggtatc----------------------------------cttctaacacagtttataatttac-------------------------------------------------tcttttactatgatcta---------------tctattccctccagtctctacagtagaaagtaagttatttgtaggcagaaattcatgtgccttttgttcactggtgtaacccaa--gctcc---gtgggttcatggtgcatgattggtactcagcaagtagctgaataaaAGGTGAACTT---TCAA--------AGTCATC-------CACTTTATGTTTTGTAATTCTTAGTTGAGAGTT--AGTTGTTCTT---TGTTACCCTTTAATCTTAGGCAAAGGCTTTAAGGCTCTCAGAGGCCTGTG--GGTTATCCTGGGCCTGATGATTTTGAATGTACCCCCAAAGAAACAAGACCTCTATTTGAAGCTGACATAGAAGTTGTGGGATTCATTTACAGAGGGCTAGGTTTGTGTGGCTAGTCACTGACTGGTAGCAAGTTATGGGAAGTGGTCCAAGAATCAAGTCTG-TTCT-ATAGCCATTTTGTCATAGCTCAAATCATCCAGAGCTTTCTGTGGCTGGAAATGGAAAGTTTT-TAAACATTATCATAGAATAAATGGATTGCTATTTTTCAACTCTGGTTGCATACCAAATTTGTATGTAGAGCATTTAAAGG-----------------------------------
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174700668 709 + 192294377 ----------tccatggaacc---ccctttt--ataat-gcagccactgccatcagcgccacctcatgttcctcgctctgcttctttgttccttttttctaatatactctgaaatacttgtggtatc----------------------------------cttctaacacagtttataatttac-------------------------------------------------tcttttactatgatcta---------------tctattccctccagtctctacagtagaaagtaagttctttgtaggcagaaattcacgtgcattttgttcactggtgtaacccaa--gctcc---gtgggttcatggtgcatgattggtactcagcaagtagctgaataaaAGGTGAACTT---TCAA--------AGTCATC-------CACTTTATGTTTTGTAATTCTTAGTTGAGAGTT--AGTTGTTCTT---TGTTACCCTTTAATCTTAGGCAAAGGCTTTAAGGCTCTCAGAGGCCTGTG--GGTTATGCTGGGCCTGATGATTTTGAATGTACCCCCAAAGAAACAAGACCTCTATTTGAAGCTGACATAGAAGTTGTGGGATTCATTTACAGAGGGCTAGGTTTGTGTGGCTAGTCACTGACTGGTAGCAAGTTATGGGAAGTGGTCCAAGAATCAAGTCTG-TTCT-ATAGCCATTTTGTCATAGCTCAAATCATCCAGAGCTTTCTGTGGCTGGAAATGGAAAGTTTT-TAAACATTATCATAGAATAAATGGATTGCTATTTTTCAACTCTGGTTGCATACCAAATTTGTATGTAGAGCATTTAAAGG-----------------------------------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163366144 713 + 180432695 ----------TCCATGGAACC---CCCTTTT--ATAAT-GCAGCCACTGCCATCAGCGCCACCTCATGTTCCTTGCTCtgcttctttgttccttttttctaatATACTCTGAAATACTTGTGGTATCCTTAT-----------------------------CTTCTAACACAGTTTATAATTTAC--------------------------------------------------CTTTTACTATGATCTA---------------TCTATTCCCTCCAGTCTCTACGGTAGAAAGAAAGTTCTTTGTAGGCAGAAATTCATGTGCATTTTGTTCATTGGTGTAACCCAA--GCTCC---GTGGATTCATGGTGCATGATTGGTACTCAGCAAGTAGCTGAATAAAAGGTGAACTT---TCAA--------AGTCATC-------CACtttatgttttgtaattcttagtTGAGAGTT--AGTTGTTCTT---TGTTACCCTTCAATCTTAGGCAAAGGCTTTACGGCTCTCAGAGGCCTGTG--GGTTATCCTGGGCCTGATGATTTTGAATCTACCCCCAAAGAAACAAGACTTCTATTTGATGCTGACATAGAAGTTGTGGGATTCATTTACAGAGGGCTAGGTTTGTGTGACTAGTCACTGACTGGTAGCAAGTTATGGGAAGTAGTCCAAGAATCAAGTCTG-TTCT-ATAGCCATTTTGTCATAGCTCAAATCATCCAGAGCTTTCTGTGGCTGGAAATGGAAAGTTTT-TAAACATTATCATAGAATAAATGGATTGCTATTTTTCAACTCTGGTTGCATACCAAATTTGTATGTAGAGCATTTAAAGG-----------------------------------
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110398601 714 + 127223203 ----------tccatggaacc---ccctttt--ataat-gcagccactgccatcagcgccacctcatgttccttgctctgcttctttgttccttttttctaatatactctgatatacttgtggtatccttat-----------------------------cttctaacacagtttataatttac-------------------------------------------------tcttttactatgatcta---------------tctattccctccagtctctacagtagaaagtaagttctttgtaggcagaaattcatgtgtgttttgttcattggtgtaacccaa--gctcc---gtgggttcatggtgcatgattggtactcagcaagtagctgaataaaAGGTGAACTT---TCAA--------AGTCATC-------CACTTCATGTTTTGTAATTCTTAGTTGAGAGTT--AGTTGTTCTT---TGTTACCCTTTAATCTTAGGCAAAGGCTTTAAGGCCCTCAGAGGCCTGTG--GGTTATCCTGGGCCTGATGGTTTTGAATGTACCCCCAAAGAAACAAGACCTCTGTTTGAAGCTGACATAGAAGTTGTGGGATTCATTTACAGAGGGCTAAGTTTGTGTGGCTAGTCACTGACTGGTAGCAAGTTATGGGAAGTGGTCCAAGAATCAAGTCTG-TTCT-ATAGCCATTTTGTCATAGCTGAAATCATCCAGAGCTTTCTGTGGCTGGAAATGGAAAGTTTT-TAAACATTATCATAGAATAAATGGATTGCTATTTTTCAACTCTGGTTGCATACCAAATGTGTATGTAGAGCATTTAAAGG-----------------------------------
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23745102 697 - 128169293 ----------tccatgg-acc---cccttcc--ataat-gcagccactgccatcagcgcca-ctcatgttccctgctctgcttctttggtcttattttctaatatactc-aatctatttgtggtatccttat-----------------------------cttccaacacagtctataatttac-------------------------------------------------tgctttactatgattga---------------tctattcccttcactctctacaatagaaagtaagttctttgtaggcagaagttcatgtgggttttgttcactggcgtaacccaa--gcccc---gtgagttcctgctgcatgactggcact----aagtaGTGGAACAAAA-GTGAATTT---TC----------AGTCATC-------CACTTTGTGTTCTGTAATTCTTAGTTGAGAGTT---GTTGTTA------GTTACCGTTTAATCTTAGGCAAAGGCTTTAAGGCTCCCAGAGGCCTGTG--GGTTATCCTGGGCCTGCAGATTTGAA--CTACCCCAAAAGAAACAAGACCTCTA-TTGAAGCTGACACAGAAGTTGTGGGACTGATTTGCAGA-GGCCAGGTTTGTGTGGCCAGTCACTGACTGGTAGCAAATTATGAGGTGTGGTCTAAGAACCAAGCCTG-TTTTTATAGCCATTTTGTCGTAGCTCAGATCATTCAGGGCTTTCTGTGGCTGGAAATGCAAAGTTTC-TAAACATTATCGTAGAATAAATGGATTGCTGTTTTTCAACTTGGGTTACACACCAAATTTGCATGTAGAGCATTTAAAGG-----------------------------------
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40391913 662 + 149736546 ----------taaatagaaataaaTCCTTTT---TAAA-AATTGTACTACCACCAGTGCAATCTCAGACTCCTTG-TCTGTTT-----ATGACACTTTGTAATATAGTCTGATGTACTTCTAGTATACCCGG-----------------------------TTTCT-GTACATTCAGTAATATAC-------------------------------------------------TGCTTCA--------------------------TTTTTCTGTGCATTCCCTTCAGTGAAATGTAAGTTCTTTGTGGGCAAAATTCCTTCTGTGT--------------TAACCCAAATATTCT---GAGGGCTGATGAAATGTGGCTGACTCTTAGTAGGTAGTTGGATGAAATGTGAAATG---TAGATTCTGAGCGGTCATTATGTCAGAACAATGTGTTTTGTAATTCCTAGTTGAGAGATACAGCTGTGCTTTAGTGGTACCTTTGAAACTCAGGCAGTGGCT--------CACAGAGGCTTGTGTATGCTCTCCTGGGCCTACAAGTTGTGAACTTCCCC-------AAGAAGGCC--------------ATACAGAAGTGTTGGGATTGCTTAACTGAAGGCTAGGCTGGTGCTGCTTGCTAATGACTAGCAGGAAAC--TGAGGAGGGGGACAGGATTCATGACTC-TTTTCATAGCACTTTCTTCT--GCATCAGGCTTTCAGAGCTTTGTATGGATAGAACCATCAAGTTTTGCAACCGTTATTGGGAAATAAGTAGGTTGCTATTGT-CTGCTCCAGTTGC-------------ATTTAGAACATTTTAGA------------------------------------
i mm10.chr6                I 158 C 0
s canFam3.chr16             52066048 837 -  59632846 tcaatgaggttcccttggacc---cctcttt--aaaataatcacccctaccacccataccatctcgtgtttcttg---tgttcttttctctcgtttttctaataaattctaatatatttctaatatacttctaatatacttttttatatacttctaatatacttctagtataATCTATAATTTATCGTTTTTGTACTGATACACTCTAACATGCTTCtaatatattttataacttattttattatGGTtagattttaatttttttttgtattccctccactttccccagtaga---taaattttttataagcagaaatactttt---tttcgctcgttgatgtaacgtaa--gcacctaggagagttgatg-----tagttgacactc----agttgttgaataaaAGGTGAACTTAGAGCAA--------AATCATT-------CCCTCTGTGTTCTGTAATTCCTGGTTGAAAGAGAAAGTTGTGCTTTGGTAGTGCTCTTTAATCTTAGGCAAAGGCTGT-CTGCTTTCAGCAGCTCATG--GATTATCCTGGGGCTACAGATTTTGAACCTGTCCAGAAAGAAACAAAACCTGTATTTGAAGTAGACACAGAAGTATTGGTTCGGATTTATAGAGGGCCGGCTTTGTATTGCTAGCCACTGACTGGCAGGAAAC---------TGGTCCAAGAACCCAGTCTG-GTTTTATAGCCACTTCCTCATAGCTTGGTTCATCTAGAGCTTTTGGTGGTCAGTAATGAAAAAATTT-AAAATACTACCATGGCAGAAACGGATTGTTGCTCTTCAACTCTGGTTGCATATCAAAACTGCGTGTAGAACATTTGaaaacaaaacaaaaaaacaaagcaaaaaaaaaaaaaaGA
i canFam3.chr16            C 0 C 0

a score=4095.000000
s hg38.chr7_GL383534v2_alt     15414 1 +    119183 A
s panTro4.chr7             143115665 1 + 161824586 A
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138919706 1 + 157549271 a
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93057175 1 + 110113093 A
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180955479 1 + 198365852 A
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174701377 1 + 192294377 A
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163366857 1 + 180432695 A
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110399315 1 + 127223203 A
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23745799 1 - 128169293 A
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52066885 1 -  59632846 A
i canFam3.chr16            C 0 I 122
e mm10.chr6                 40392575 0 + 149736546 C

a score=269345.000000
s hg38.chr7_GL383534v2_alt     15415  89 +    119183 GCACAGGCA------------------------------------------------------------------------------------------------CTTGGGCTCTCCACACCAAGCAGCCGATTCCAT--GCTGTCATGTGAAGCTCATGTACAGTGAACACTGAGA-TTGCTGGGAT
s panTro4.chr7             143115666  89 + 161824586 GCACAGGCA------------------------------------------------------------------------------------------------CTTGGGCTCTCCACACCAAGCAGCCGATTCCAT--GCTGTCATGTGAAGCTCATGTACAGTGAACACTGAGA-TTGCTGGGAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138919707  89 + 157549271 gcacaggca------------------------------------------------------------------------------------------------cttgggctctccacaccaagcagctgattccat--gctgtgatgtgaagctgatgtacagtgaacactgaga-ttgctgggat
i ponAbe2.chr7             C 0 I 158
s nomLeu3.chr13             93057176  89 + 110113093 GCACAGGCA------------------------------------------------------------------------------------------------CTTCGGCTCTCCACACCAAGCAGATGATTCCAC--GCTGTGATGTGAAGCTGATGTACAGTGAACACTGAGA-TTGCTGGGAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180955480  89 + 198365852 GCACAGGCA------------------------------------------------------------------------------------------------CCTGGGCTCTCCACACCAAGCAGCTGATTCTAT--GCTGTGATGTGAAGCTGATGCACAGTGAACACTGAGA-TTGCTGGGAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174701378  89 + 192294377 GCACAGGCA------------------------------------------------------------------------------------------------CCTGGGCTCTCCACACCAAGCAGCTGATTCTAT--GCTGTGATGTGAAGCTGATGTACAGTGAACACTGAGA-TTGCTGGGAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163366858  89 + 180432695 GCACAGGCA------------------------------------------------------------------------------------------------CCTGGGCTCTCCACACCAAGCAGCTGATTCCAT--GCTGTGATGTGAAGCTGATGTACAGTGAACACTGAGA-TTGCTGGGAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110399316  89 + 127223203 GCACAGGCA------------------------------------------------------------------------------------------------CCTGGGCTCTCCACACCAAGCAGCTGATTCCAT--GCTGTGATGTGAAGCTAATGTACAGTGAACACTGAGA-TTGCTGGGAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23745800  87 - 128169293 ACACAACCA------------------------------------------------------------------------------------------------CCTGGGCTCTCCACGCCAAGCAGATGATTCCAT--GCTCTGATGTGAAGCTGACATACAGAGAACA--GAGA-TTGCTGGGAT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52067008 187 -  59632846 gctcagggaggagtctgcttgaagattctcctctgcccctccctttgcttgtgatcactctctctctcaaatcaatctttaaaaaTACAAAAAACCCAGCACATCCTTGGGCTCTGCATGTCAAGAAGCTG-CTCCATCAGGTGTGCTGTAATGCTGATGGATAGTGAGGATGGAGGCTCGCTGGGGT
i canFam3.chr16            I 122 C 0
e mm10.chr6                 40392575   0 + 149736546 C

a score=822564.000000
s hg38.chr7_GL383534v2_alt     15504 268 +    119183 GGGCTGA---AAGCTTGGCCTGCAAGGGAAGTAATCCTAGAGACTAGAACGGCTAATAATTACTAGTGAGTGACAGAACGTCCAGAACCTCCCACTCTGAGT---------------TT--TGTTT-GCTTAT----GTAGT---AAAAAAAAAAGCCAAGCAA-----TGGAGATGAATTT-----TCTATAAATTATACCTCAGTAAAGCTCTTTGTGaa----aaaaaaaaaaaaaaaGATTGAAAATAGGTTTGGAATTAAATCACTACAAGTAGAGTCCCCTATCT-ATATATAGCTTCAAACTAT
s panTro4.chr7             143115755 267 + 161824586 GGGCTGA---AAGCTTGGCCTGCAAGGGAAGTAATCCTAGAGACTAGAACAGCTAATAATTACTAGTGAGTGACAGAACGTCCAGAACCTCCCACTCTGAGT---------------TT--TGTTT-GCTTAT----GTAGT---AAAAAAAAAAGCCAAGCAA-----TGGAGATGAATTT-----TCTATAAATTATACCTCAGTAAAGCTCTTAGTGAA----AAAAAAAAAAAAAA-GACTGAAAATAGGTTTGGAATTAAATCACTACAAGTAGAGTCCCCTATCT-ATACATAGCTTCAAACTAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138919954 269 + 157549271 GGGCTGA---AAGCTTGGCCTGCAAGGGAAGTCATCCTAGAGACTAGAACAGCTAATAATTACTAGTGAGTGACAGAACGTCCAGAACCTCCCACTCTGAGT---------------TTTCTGTTT-GCTTAT----GTAGT-AAAAAAAAAAAAGCCAAGCAA-----TGGAGATGAATTT-----TCTATAAATTATACCTCAGTAAAGCTCTTAGTGAA----AAAAAAAAAAAA---GACTGAAAATAGGTTTGGAATTAAATCACTACAAGTAGAGTCCCCTATCT-ATACATAGCTTCAAACTAT
i ponAbe2.chr7             I 158 C 0
s nomLeu3.chr13             93057265 265 + 110113093 GGGCTGA---AAGCTTGGCCTGCAAGGGAAGTAATCCTAGCGACTAGAACAGCTAATAATTACTAGTGAGTGACAGAACGTCCAGAACCTCCCACTCTGAGT---------------TTTCTGTTT-GCTTAT----GTAGT------AAAAAAAGCCAAGCAA-----TGGAGATGAATTT-----TCTATAAATTATACCTCAGTAAAGCTCTTAGTGAA----AAAAAAAAAAAAA--GACTGAAAATAGGTTTGGAATTAAATCACTACAAGTAGAGTCCCCTATCT-ATACATAGCTTCAAACTAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180955569 272 + 198365852 GGGCTGA---AAGCTTGGCCTGCAAGGGAAGTAATCCTAGAGACTAGAACAGTTAATAATTACTAGTGAGTGACAGAACGTCCAGAACCTCCCACTCTGAGT---------------TTTCTGTTT-GCTTAT----GTAGTAAAAAAAAAAAAAGCCAAGCAA-----TGGAGATGAATTT-----TCTATAAATTATACCTCAGTAAAGCTCTTAGTGGGG---GAAAAAAAAAAAA--GGCTGAGAATAGGTTCAGAATTAAATCACTACAAGTAGAGCCCCCTATTT-GTACACAGCTTCAAACTAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174701467 272 + 192294377 GGGCTGA---AAGCTTGGCCTGCAAGGGAAGTAATCCTAGAGACTAGAACAGTTAATAATTACTAGTGAGTGACAGAACGTCCAGAACCTCCCACTCTGAGT---------------TTTCTGTTT-GCTTAT----GTAGT---AAAAAAAAAAGCCAAGCAA-----TGGAGATGAATTT-----TCTATAAATTATACCTCAGTAAAGCTCTTAGTGGGGAAAAAAAAAAAAAAAA--GGCTGAGAATAGGTTCAGAATTAAATCACTACAAGTAGAGCCCCCTATTT-GTACACAGCTTCAAACTAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163366947 264 + 180432695 GGGCTGA---AAGCTTGGCCTGCAAGGGAAGTAATCCTAGAGACTAGAACAGTTAATAATTACTAGTGAGTGACAGAACGTCCAGAACCTCCCACTCTgagt---------------tttctgttt-gcttat----gtAGT-----aaaaaaaaGCCAAGCAA-----TGGAAGtgaattt-----tctataaattatacctcagtaaagctcttagtg------aaaaaaaaaaaaa--gactgagaataGGTTCAGAATTAAATCACTACAAGTAGAGTCCCCTATTT-GTACATAGCTTCAAACTAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110399405 269 + 127223203 GAGCTGA---AAGCTTGGCCTGCAAGGGAAGTAATCCTAGAGACTAGAACAGTTAATAATTACTAGTGAGTGACAGAACGTCCAGAACCTCCCACTCTGAGT---------------TTTCTGTTT-GCTTAT----GTAGT--AAAAAAAAAAAGCCAAGCAA-----TGGAGATGAATTT-----TCTATAAATTATACCTCAGTAAAGCTCTTAGTGGG----AAAAAGAAAAAAA--GGCTGAGAATAGGTTCAGAATTAAATCACTACAAGTAGAGTCCCCTATTT-GTACATAGCTTCAAACTAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23745887 258 - 128169293 GGGCTGA---AAGCTTGGCCTGCAAGAGAAGTAATCCTAGAGACTAGAGCAGCC-ATGAGTACTAGTGAGTGAC--AACTTCCAGAACCTCCCCCTCTGAGT---------------TTTTCTTTT-GCATAT----ATAGT-----AACAAAAAGCCAAGCAA-----TGGAGATGAATTT-----TCTATAAAGTATACCTCAGTAAAGCTCTTATTGGG----AAAAAAAA-------GACTGAAAATATGTTTAAAATTAAGTCACTACAAGTAGAGTCCCCTAACT-ATGCATAGCTTCAAACTAT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52067195 289 -  59632846 AGGCAGACTGAGGCCTGACCT--CAGGGAGGGAACCTTAGAGACCACAACAGCT-GTGATGATT----AGTGGTAGAATGGCACAGACCTCTTACTCTGAGTTCTGACAAACATGAGTTTTTGTTTAGCTTATCTGGGTAGC-----AAAAACCAACCAACCAAACAAGCAGTGATGCATTTCATGGCATGTAAATGAGG-CTCAATAAGGCTCTTCATGTATT--TAAAATAAAAAAG--GA-----AATATATTCAGGATTAAGTTATTAAAAGTGAAAGTCTCTGTATAATAAACAGCTTCAAAATAT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40392575   0 + 149736546 C

a score=191434.000000
s hg38.chr7_GL383534v2_alt     15772 50 +    119183 GAACCATCAAAGCTGAGGATGACAACAGGCTGCATTAGCCAAATTTTAAG
s panTro4.chr7             143116022 50 + 161824586 GAACCATCCAAGCTGAGGATGACAACAGGCTGCATTAGCCAAATTTTAAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138920223 50 + 157549271 GAACCATCAAAGCTGAGGATGACAACAGGCTGCATTAGCCAAATTTTAAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93057530 50 + 110113093 GAACCATCAAAGCTGAGGATGACAACAGGCTGCATTAGCCAAATTTTAAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180955841 50 + 198365852 GAACCATCAAAGCTGAGGATGACAACAGGCTGCATTAGCCAAATTTTAAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174701739 50 + 192294377 GAACCATCAAAGCTGAGGATGACAACAGGCTGCATTAGCCAAATTTTAAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163367211 50 + 180432695 GAACCATCAAAGCTGAGGATGACAACAGGCTGCATTAGCCAAATTTTAAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110399674 50 + 127223203 GAACCATCAAAGCTGAGGATGACAACAGGCTGCATTAGCCAAATTTTAAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23746145 50 - 128169293 GAACCGTCAAAGCTGAGGATGGCAACAGGCTGCATTAGCCAAATTTTAAG
i calJac3.chr8             C 0 I 294
s mm10.chr6                 40392575 45 + 149736546 GAACCCAGACACCTGTGGGCGACA----GCTTCATTAGCCCAATTTCCA-
i mm10.chr6                C 0 C 0
s canFam3.chr16             52067484 47 -  59632846 GAACCCCTGAGGCTAACG--GACAACAGGCTGCATTAGCAAAAATGTAG-
i canFam3.chr16            C 0 C 0

a score=5425473.000000
s hg38.chr7_GL383534v2_alt     15822 1493 +    119183 AGTAATGACGTTAGTGTTCTTAACCTTTTTAGAGCAAAGAAGATTTTCTGAATATCTGCATTGAACCTGACACCATCAGCAAAGGAGACTTTATAACTATAGGGTAAGTGGACTGGGGTTCACAGGAAATGAGGCTT----------GTGATTTTCTCAGATTTTACTATTCAGAGTGCCCCATGAAGTCTAAGACAGAAATCCAGCCAAAGCCTTGTCTTGTTTGGGAATTTCGATGT----TATTTCTTTC----CTATGGGCTGACATGTAGAGTGCCCCTCTCCTATGCTGGCCATCACTGTTCATTTTGTGGGGATCAGAATGTAAGAGCAGTCTTTGTTTTTCAATTGAAACCAAAGAATTCAATGGagcatgacacagcgtcaagaactttggtttcagggtcaaag-agctgaatgcaaattttgattctgccacttacccgacgtcatgactcgga----tcatttagcatctctgaattcttt--ccgtctacagaatgaaat-----aatcatctctgccgatctcaggactggctttcagccttgagtaagagaatgtgtgtcaagcctttTTATA---TTTTGAAGCACTTCACAGTATCCATTACTATTTATGTCAGTTCACCATGTCCTCC-TATTCCCAGGGCCTTCATGAAAAACTGGAAAAGGTATTGAGTAC---CTTGGACATTTCCCAGGCCTTTTTCCCTTTTCCAATACAGAATACCCTTCCAAGTTCTG--TGATTTGTTAAGTCCTACCTCTGCCAGAATTTTATTGGTAAAGAACACTATAAATCCT-------C--------CTTCAGGGCATCTGAGGAGCTG---GTGTGTTCCCATGCCAACTGGTAATCTGCTCAG-------CTCCGCTTTTCT------GTGCTTTGTCTCAGAGCTCCCTCTCGTGCCC-ATTTAGGGATCACACATTTCTGCTGCAGCGGCCTGGTCTCCATGGCTACTTCATTATCTACACAGGCA--------------------CATAAGTT--TGT--TGTTCTTGCCTTTGGCATAAATTCTTCAGAGACTGAATAGCTGATTCTGCAGCCTTTGATT-TTCTTGCTGTATCTAT---------AAGAA-G-----GGAAAATCCTGTTCCTTCTACAGAATGTCCAGAAATCACACA--ATCTTCATTGACAGTCTG---------GCCAGTGAGACCAGCAATATTCAAATCTCCTTTATGATACTGGTATCCAGAAAT----AGAGACCCC----AAT---TCTATTGCTAAGGTTAGGCGAAGCCACTATGTTCTGCATTGTT------AGCACCAGTGGCAGC-------CAGTGTCCTTCTGTTCTCTACAGGAAGTGAAATCAAGTAATGTCTGTTTCCTCTGGATATCTGAAGAGAACATAGTGAAGCTGCGTTAGAAAACTCTGATAC--CGTTTTGTAGA-GTTACTGTTGTTAATAAATGATAAAT---GGACTGATTTACTTAGATTAGCTTTTACTGTATTTCCACTGCCTA------A----AA------------GATACATCTGCATGAGGT----GGAGTGTGTGTCTGTATATGCGCTGGAAATTTTACTCCATAGTCACTCAGTCAA-GGTAGATATTGTATG
s panTro4.chr7             143116072 1496 + 161824586 AGTAATGACGTTAGTGTTCTTAACCATTTTAGAGCAAAGAAGATTTTCTGAATATCTGCATTGAACCTGACACCATCAGCAAAGGAGACTTTATAACTATAGGGTAAGTGGACTGGGGTTCACAGGAAATGAGGCTT----------GTGATTTTCTCAGATTTTACTATTCAGAGTGCCCCATGAAGTCTAAGACAGAAATCCAGCCAAAGCCTTGTCTTGTTTGGGAATTTCGATGT----TATTTCTTTC----CTATGGGCTGACATGTATAGTGCCCCTCTCCTATGCTGGCCATCACTGTTCATTTAGTGGGGATCAGAATGTAAGAGCAGTCTTTGTTTTTCAATTGAAACCAAAGAATTCAATGAagcatgacacagcgtcaagaactttggtttcagggtcaaag-agctgaatgcaaattttggttctgccacttacccgacgtcatgactcgga----tcatttagcatctctgaattcttt--ccgtctacagaatgaaat-----aatcatctctgccgatctcaggactggctttcagccttgagtaagagaatgtgtgtcaagcctttTTATA---TTTTGAAGCACTTCACAGTATCCATTACTATTTATGTCAGTTCACCATGTCCTCC-TATTCCCAGGGCCTTCATGAAAAACTGGAAAAGGTATTGAGTAC---CTTGGACATTTCCCAGGCCTTTTTCCCTTTTCCAATACAGAATACCCTTCCAAGTTCTG--TGATTTGTTAAGTCCTACCTCTGCCAGAATTTTATTGGTAAAGAACACTATAAATCCT-------C--------CTTCAGAGCATCTGAGGAGCTG---GTGTGTTCCCATGCCAACTGGTAATCTGCTCAG-------CTCCGCTTTTCT------GTGCTTTGTCTCAGAGCTCCCTCTCGTGCCC-ATTTAGGGATCACACATTTCTGCTGCAGCGGCCTGGTCTCCATGGCTACTTCATTATCTACACAGGCA--------------------CATAAGTT--TGT--TGTTCTTGCCTTTGGCATAAATTCTTCAGAGACTGAATAGCTGATTCTGCAGCCTTTGATT-TTCTTGCTGTATCTAT---------AAGAA-G-----GGAAAATCCTGTTCCTTCTACAGAATGTCCAGAAATCACACA--ATCTTCATTGACAGTCTG---------GCCAGTGAGACCAGCAATATTCAAATCTCCTTTATGATACTGGTATCCAGAAAT----AGAGACCCC----AAT---TCTATTGCTAAGGTTAGGCGAAGCCACTATGTTCTGCATTGTT------AGCACCAGTGGCAGC-------CAGTGTCCTTCTGTTCTCTACAGGAAGTGAAATCAAGTAATGTCTGTTTCCTCTGGATATCTGAAGAGAACATTGTGAAGCTGCGTTAGAAAACTCTGATAC--CGTTTTGTAGA-GTTACTGTTGTTAATAAATGATAAATAATGGACTGATTTACTTAGATTAGCTTTTACTGTATTTCCACTGCCTA------A----AA------------GATACATCTGCATGAGGT----GGAGTGTGTGTCTGTATATGCGCTGGAAATTTTACTCCATAGTCACTCAGTCAA-GGTAGATATTGTATG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138920273 1501 + 157549271 AGTAATGACATTAGTGTTCTTAACCTTTTTAGAGCAAAGAAGATTTTCTGAATATCTGCATTGAACCCGACACCATCAGCAAAGGAGACTTTATAACTATAGGGTAAGTGGACT-GGGTTCACAGGAAATGAGGCTT----------GTGATTTTCTCAGATTTTACTATTCAGAGTGCCCCATGAAGTCTGAGAC--AAATCCAGCCAAAGCCTTGTCTTGTTTGGGAATTTCGATGT----TATTTCTTTC----CTATGGGCTGACATGTATAGTGCCCCTCTCCCATGCTGGCCATCACTGTTCATTTTGTGGGGATCACAATGTAAGAGCAGTCTTTGTTTTTCAACTGAAACCAGAGAATTcaatggagcatgacacagcgtcaagaactttggtttcagggtcaaag-agctgaatgcaaattttgattctgccacttacccgacgtcatgattcaga----tcatttagcatctctgaatcctttgcctgtctacagaatgaaat-----aatcatctctgccgatctcaggactggctttcagccttgagtaagagaatgtgtgtcaagcctttttata---ttttgaagcacttcacaGTATCCATTACTATTTATGTCAGTTCACCATGTCCTCC-TATTCCCAGGGCCTTCATGAAAAACTGGAAAAGGTATTGAGTAC---TTTGGACATTTCCCAGGCCTTTTTCCCTTTTCCAATACAGAATACCCTTCCAAGTCCTG--TGATTTGTTAAGTCCTACCTCTGCCAGAATTTTATTGGTAAAGAACACTATAAATCCT-------C--------CTTCAGAGCATCTGAGGAGCTG---GCGTGTTCCCATGCCAACTGGTAATCTGCTCAG-------CTCCGCTTTTCT------GTGCTTTGTCTCAGAGCTCCCTCTCGTGCCC-ATTTAGGGATCACACATTTCTGCTGCAGCAGCCTGGTCTCCATGGCTACTTCATTATCTACACAGGCA--------------------CATAAGTT--TGT--TGTTCTCGCCTTTGGCATAAATTCTTCAGAGACTGAATAGCTGATTCTGCAGCCTTTGATT-TTCTTGCTGTATCTAT---AGGAAAAAGAA-G-----GGAAAATCCTGTTCCTTCTACGGAATGTCCAGAAATCACACA--GTCTTCATTGACAGTCTG---------GCCAGTGAGACCAGCAATATTCAAATCTCCTTTATGATACTGGTATCCAGAAAT----AGAGACCCC----AAT---TCTATTGCTAAGGTTAGGCGAAGCCACTATCTTCTGCATTGTT------AGCACCAGTGGCAGC-------CAGTGTCCTCCTCTTCTCTACAGGAAGTGAAATAAAGTAATGTCTGTTTCCTCTGGATATCTGAGGAGAACATTGTGAAGTTGCGTTAGAAAACTCTGATAC--CGTTTCTTAGA-GTTACTGTTGTTAATAAATGATAAATAATGGACTGATTTACTTGGATTAGCTTTTACTGTATTTCCACTGCCTA------A----AA------------GATACATCTGCATGAGGT----GGAGTGTGTGTCTGTATATGCGCTGGAAATTTTACTCCATAGTCACTCAGTCAA-GGTAGATACTGTATG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93057580 1501 + 110113093 AGTAATGACGTTAGTGTTCTTAACCTTTTTAGAGCAAAGAAGATTTTCTGAATATCTGCATTGAACCCGACACCATCAGCAAAGGAGACTTTATAACTATAGGGTAAGTGGACTGGGGTTCACAGGAAATGAGGCTT----------GTGATTTTCTCAGATTTTACTATTCAGAGTGCCCCATGAAGTCTAAGACAGAAATCCAGCCAAAGCCTTGTCTTGTTTGGGAATTTCGATGT----TATTTCTTTC----CTATGGGCTGACATGTATAGTGCCCCTCTCCTATGCTGCCCATCATTGTTCATTTTGTGGGGATCAGAATGTAAGAGCAGTCTTTGTTTTTCAATTGAAACCAAAGAATTCAATGGagcatgacacagcatcaagaactttggtttcggggtcaaag-agctgaatgcaaattttgattctgccacttaccca--gtcatgactcaga----tcatttagcgtctctgaatcctttccctgtctacagaatgaaat-----aatcatctctgccgatctcaggactggctttcagccttgagtaagagaatgtgtgtcaagcctttttata---ttttgaagcacttcacaGTATCCATTACTATTTATGTCAGTTCACCATGTCCTCC-TATTCCCAGGGCCTTCATGAAAAACTGGAAAAGGTATTGAGTAC---CTTGGACATTTCCCAGGCCTTTTTCCCTTTTCCAATACAGAATACCCTTCCAAGTCCTG--TGATTTGTTAAGTCCTACCTCTGCCAGAA-TTTATTGGTTAAGAACACTATAAATCCT-------C--------CTTCAGAGCATCTGAGGAGCTG---GTGTGTTCCCATGCCAACTGGTAAtctgctcag-------ctctgcttttct------gtgctttgtctCAGAGCTCCCTCTCGTGCCC-ATTTAGGGATCACACATTTCTGCTGCAGCGGCCTGGTCTCCATGGCTACTTCATTATCTACATGGGCA--------------------CATAAGTT--TGT--TGTTCTCGCCTTTGGCATAAATTCTTCAGAGACTGAATAGCTGATTCTGCAGCCTTTGATT-TTCTTGCTGTATCTAT---AGGAAAAAGAA-G-----GGAAAATCCTGTTCCTTCTACGGAATGTCCAGAAATCACACA--ATCTTCACTGACAGTCTG---------GCCAGTGAGACCAGCAATATTCAAATCTCCTTTATGATACTGGTATCCAGAAAT----AGAGACCCC----AAT---TCTATTGCTAAGGTTAGGCGAAGTGACTATGTTCTGCATTGTT------AGCACCAGTGGCAGC-------CAGTGTCCTTCTGTTCTCTACAGGAAGTGAAATCAAGTAATGTCTGTTTCCTCTGGATATCTGAAGAGAACATTGTGAAGTTGCGTTAGAAAACTCTGATAC--CGTTTCGTAGA-GTTACTGTTGTTAATAAATGATAAATAATAGACTGATTTACTTGGATTAGCTTTTATTGTATTTCCACTACCTA------A----AA------------GATATATCTGCATGAGGT----GGAGTGTGTGTCTGTATATGCGCTGGAAATTTTACTCCATAGTCACTCAGTCAA-GGTAGATATGGTATG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180955891 1508 + 198365852 AATAATGACGTTAGTGTTCTTAACCTTTTTAGAGCAAAGAAGATTTTCTGAATATCTGCATTGAACCTGACACCATCAGCAAAGGAGACTTTATAACTATAGGGTAAGTGGACTGGGGTTCATAGGAAATGAGGCTT----------GTGATTTTCTCAGATTTTACTATTCAGAGTGCCCCATGAAGTCTAAGACAGAGATCCAGCCAAAGCCTTGTCTTGTTTGGGAATTTCGATGT----TCTTTCTTTC----CTAGGGGCTGACATGTATAGTGCCCCTCTCCTGTGCTGGCCATCACTGTTCATTTTGTGGGGATCAGAATGTAAGAGCAGTCTTTGTTTTTCAATTGAAACCAAAGAATTCAATGGagcatgacacagcgtcaagaactttggtttcagggtcaaag-agctgaatgcaaattttgattctgccacttacccgacgtcatgactcgga----tcatttagcg--tctgaatcctttccctgtctacagaatgaaataacacaatcgtctctgccgatctcaggaccggcgttcagccttgagtaagagaatgtgtgtcaagtctttttata---ttgtgaagcacttcacaGTATCCATTACTGTTTATGTCAGTTCACCATGTCCTCC-TATTCCCAGGGCCTTCATAGAGAACTCGAAAAGGTATTGAGTAC---CTTGGGCATTTCCCAGGCCTTTTTCCC-TTTCCAACACAGAATACCCTTCCAAGTCCTG--TGATTTGTTAAGTCCTACCTCTGCCAGAATTGTATTGGTTAAGAACACTATAAATCCT-------C--------CTTCAGAGCATCTGAGGAGCTG---GTGTGTTCCCATGCCAACTGGTAATTTGCTCAG-------CTCTGCTTTTCT------GTGCTTTGTCTCAGAGCTCCCTCTCGTGCCC-ACTTAGGGATCACACATTTCTGTTGCAGCGGCCTGGTCTCCATGGCTACTTCATTATCTACACAGGCA--------------------CATAAGTT--TGT--TGTTCTTGCCTTTGGCATAAATTCTTCAGAGACTGAATAGCTGATTCTGCAGCCTTTGATT-TTCTTGCTGTATCTAT---AGGAAAAAGAA-G-----GGAAAATCCTGTTCCTTCTACGGAATGTCCAGAAATCACACA--ATCTTCATTGACAGTCTG---------GCCAGCGAGACCAGCAATATTCAAATCTCCTTTATGATACTGGGATCCAGAAAT----AGAGACCCC----AAT---TCTATTGCTAAGGTTAGGCGAAGCCACTATGTTCTGCATTGTT------AGCATCAGTGGCAGC-----CACAGTGTCCTTCTGTTCTCTACAGGAAGTGAAATCAAGTAATGTCTGTTTCCTCTGGATACCTGAAGAGAACATTGTGAAGTTGCATTAGAAAACTCTGATA---CATTTCGTAGA-ATTACTGTTGTTAATGAATGATAAATAATGGACTAGTTTACCTGGATTAGCTTTTACTGTACTTCCACTGCCTA------A----AG------------GATATATCTGCATGAGGT----GGAGTGTGTGTCTGAATATGCGCTGGAAATTTTACTCCATAGTCACTTACTCAAGGGTAGATATTGTATG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174701789 1507 + 192294377 AGTAATGACGTTAGTGTTCTTAACCTTTTTAGAGCAAAGAAGATTTTCTGAATATCTGCATTGAACCTGACACCATCAGCAAAGGAGACTTTATAACTATAGGGTAAGTGGACTGGGGTTCATAGGAAATGAGGCTT----------GTGATTTTCTCAGATTTTACTATTCAGAGTGCCCCATGAAGTCTAAGACAGAGATCCAGCCAAAGCCTTGTCTTGTTTGGGAATTTCGATGT----TCTTTCTTTC----CTAGGGGCTGACATGTATAGTGCCCCTCTCCTGTGCTGGCCATCACTGTTCATTTTGTGGGGATCAGAATGTAAGAGCAGTCTTTGTTTTTCAATTGAAACCAAAGAATTCAATGGagcatgacacagcgtcaagaactttggtttcagggtcaaag-agctgaatgcaaattttgattctgccacttacccgacgtcatgactcgga----tcatttagcg--tctgaatcctttccctgtctacagaatgaaataacacaatcgtctctgccgatctcaggaccggcgttcagccttgagtaagagaatgtgtgtcaagtctttttata---ttgtgaagcacttcacaGTATCCATTACTGTTTATGTCAGTTCACCATGTCCTCC-TATTCCCAGGGCCTTCATAGAGAACTCGAAAAGGTATTGAGTAC---CTTGGGCATTTCCCAGGCCTTTTTCCC-TTTCCAACACAGAATACCCTTCCAAGTCCTG--TGATTTGTTAAGTCCTACCTCTGCCAGAATTGTATTGGTTAAGAACACTATAAATCCT-------C--------CTTCAGAGCATCTGAGGAGCTG---GTGTGTTCCCATGCCAACTGGTAATTTGCTCAG-------CTCTGCTTTTCT------GTGCTTTGTCTCAGAGCTCCCTCTCGTGCCC-ACTTAGGGATCACACATTTCTGTTGCAGCGGCCTGGTCTCCATGGCTACTTCATTATCTACACAGGCA--------------------CATAAGTT--TGT--TGTTCTTGCCTTTGGCATAAATTCTTCAGAGACTGAATAGCTGATTCTGCAGCCTTTGATT-TTCTTGCTGTATCTAT---AGGAAAAAGAA-G-----GGAAAATCCTGTTCCTTCTACGGAATGTCCAGAAATCACACA--ATCTTCATTGACAGTCTG---------GCCAGCGAGACCAGCAATATTCAAATCTCCTTTATGATACTGGGATCCAGAAAT----AGAGACCCC----AAT---TCTATTGCTAAGGTTAGGCGAAGCCACTATGTTCTGCATTGTT------AGCATCAGTGGCAGC-----CACAGTGTCCTTCTGTTCTCTACAGGAAGTGAAATCAAGTAATGTCTGTTTCCTCTGGATACCTGAAGAGAACATTGTGAAGTTGCATTAGAAAACTCTGATA---CATTTCGTAGA-ATTACTGTTGTTAATGAATGATAAATAATGGACTAGTTTACCTGGATTAGCTTTTACTGTACTTCCACTGCCTA------A----AG------------GATATATCTGCATGAGGT----GGAGTGTGTGTCTGAATATGCGCTGGAAATTTTACTCCATAGT-ACTTACTCAAGGGTAGATATTGTATG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163367261 1509 + 180432695 AGTAATGACGTTAGTGTTCTTAACCTTTTTAGAGCAAAGAAGATTTTCTGAATATCTGCATTGAACCTGACACCATCAGCAAAGGAGACTTTATAACTATAGGGTAAGTGGACTGGGGCTCATAGGAAATGAGGCTT----------GTGATTTTTTCAGATTGTACTATTCAGAGTGTCCCATGAAGTCTAAGACAgagatccagccacagccttGTCTTGTTTGGGAATTTCGATGT----TCTTTCTTTC----CTAGGGGCTGACATGTATAGTGCCCCTCTCCTGTGCTGGCCGTCACTGTTCATTTTGTGGGGATCAGAATGTAagagcagtttttgtttttcaattgaaACCAAAGAATTCAATGGAGCATGACACAGCGTCAAGAATTTTGGTTTCAGGGTCAAAG-AGCTGAATGCAAATTTTGATTCTGCCACTTACCCGACGTCATGACTCGGA----TCATTTAGCG--TctgaatcctttccccatctACAGAATGAAATAAGACAATCGTCTCTGCCGATCTCAGGACCGGCGTTCAGCCTTGAGTAAGAGAATGTGTGTcaagtctttttatt---ttgtgaagcACTTCACAGTATCCATTACTGTTTATGTCAGTTCACCACGTCCTCCTTATTGCCAGGGCCTTCATGGAAAACTGGAAAAGGTATTGAGTAC---CTTGGGCATTTCCCAGGCCTTTTTCAC-TTTCCAACACAGAATACCCTTCCAAGTCCTG--TGATTTGTTAAGTCCTACCTCTGCCAGAATTGTATTGGTTAAGAACACTATAAATCCT-------C--------CTTCAGAGCATCTGAGGAGCTG---GTGTGTTCCCATGCCAACTGGTAATTTGCTCAG-------CTCTGCTTTTCT------GTGCTTTGTCTCAGAGCTCCCTCTCGTGCCC-ACTTAGGGATCACACATTTCTGTTGCAGCGGCCTGGTCTCCATGGCTACTTCATTATCTACACAGGCA--------------------CATAAGTT--TGT--TGTTCTTGCCTTTGGCATAAATTCTTCAGAGACTGAATAGCTGATTCTGCAGCCTTTGATT-TTCTTGCTGTATCTat---aggaaaaagaa-g-----ggaaaatccTGTTCCTTCTACGGAATGTCCAGAAATCACACA--ATCTTCATTGACAGTCTG---------GCCAGCGAGACCAGCAATATTCAAATCTCCTTTATGATACTGGGATCCAGAAAT----AGAGACCCC----AAT---TCTATTGCTAAGGTTAGGCGAAGCCACTATGTTCTGCATTGTT------AGCACCAGTGGCAGC-----CACAGTGTCCTTCTGTTCTCTACAGGAAGTGAAATCAAGCAATGTCTGTTTCCTCTGGATATCTGAAGAGAACATTGTGAAGTTGCATTAGAAAACTCTGATAC--CATTTCGTAGA-ATTACTGTTGTTAATGAATGATAAATAATGGACTAGTTTACCTGGATTAGCTTTTACTGTACTTCCACTGCCTA------A----AG------------GATATATCTGCATGAGGT----GGAGTGTGTGTCTGAATATGCACTGGAAATTTTACTCCATAGTCACTTACTCAA-GGTAGATATTGTATG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110399724 1508 + 127223203 AGTAATGACGTTAGTGTTCTTAACCTTTTTAGAGCAAAGAAGATTTTCTGAATATCTGCATTGAACCTGACACCATCAGCAAAGGAGACTTTATAACTATAGGGTAAGTGGACTGGGATTCATAGGAAATGAGGTTT----------GTGATTTTCTCCGATATTACTATTCAGAGTGTCCCATGAAGTCTAAGACAGAGATCCAGCCAAAGCCTTGTCTTGTTTAGGAATTTCGATGT----TCTTTCTTTC----CTAGGGGCTGACATGTGTAGTGCCCCTCTCCTGTGTTGGCCGTCACTGCTCATTTTGTGGGGATCAGAATATAAGAGCAGTCTTTGTTTTTCAATTGAAACCAAAGAATTCAATGGagcatgacacagcgtcaagaactttggtttcaggctcaaag-agctgaatgcaaattttgattctgccacttacccgacgtcatgactcgga----tcatttagcg--tctgaatcctttccccatctacagaatgaaataagacaatcgtctctgccgatcttaggaccggcattcagccttgagtaagagaatgtgtgtcaagtctttttata---ttgtgaagcacttcacaGTATCCATTACTGTTTATGTCAGTTCACCACGTCCTCC-TATTCCCGGGGCCTTCATGGAAAACTGGAAAAGGTATTGAGTAC---CTTGGGCATTTCCCAGGCCTTTTTCCC-TTTCCAACACAGAATACCCTTCCAAGTCCTG--TGATTTGTTAAGTCCTACCTCTGCCAGAATTGTATTGGTTAAGAACACTATAAATCCT-------C--------CTTCAGAGCATCTGAGGAGCTG---GTGTGTTCCCATGCCGACTGGTAATTTGCTCAG-------CTCTGCTTTTCT------GTGCTTTGTCTCAGAGCTCCCTCTTGTGCCC-ACTTAGGGATCACACATTTCTGTTGCAGCGGCCTGGTCTCCATGGCTACTTCATTATCTACACAGGCA--------------------CATAAGTT--TGT--TGTTCTTGCCTTTGGCATAAATTCTTCAGAGACTGAATAGCTGATTCTGCAGCCTTTGATT-TTCTTGCTGTATCTCT---AGGAAAAAGAA-G-----GGAAAATCCTGTTCCTTCTACAGAATGTCCAGAAATCACACA--ATCTTCACTGACAGTCTG---------ACCAGCGAGACCAGCAATATTCAAATCTCCTTTATGATACTGGGATCCAGAAAT----AGAGACCCC----AAT---TCTATTGCTAAAGTTAGGTGAACCCACTATGTTCTGCATTGTT------AGCACCAGTGGCAGC-----CACAGTGTCCTTCTGTTCTCTACAGGAAGTGAAATCAAGCAATGTCTGTTTCCTCTGGATATCTGAAGAGAACATTGTGAAGTTGCATTAGAAAACTCTGATAC--CATTTCGTAGA-ATTACTGTTGTTAATGAATGATAAATAATGGACTAGTTTACCTGAATTAGCTTTTACTGTATTTCCACTGCCTA------A----AG------------GATATATCTGCATGAGGT----GGAGTGTGTGTCTGAATATGCGCTGGAAATTTTACTCCATAGTCACTTAGTCAA-GGTAGATATTGTATG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23746489 1495 - 128169293 aGTAATGACATTCATGTTCTGAACGTTTTTAGAGCAAAGAAGATTTTATGAACATCTGCATTGAACCTGACTCCATCAGCAAAGGAGACTTTATAACTATAGGGTAAGTGGACTGGGGTTCATGGGAAATGAGGCTT----------GTGGTTTTCTCAGACGTTACTATTCAGAGTG-CGCATGAAGTCTGAGA-----GTCCAGCCAAAGCCTTGTCTCGTTTGGGAAATTTTATGT----CATTTCTTTA----CTATGGGCTGACATGTATAGCGCCCCTCTCCTATGTTGGACATCACTGTTCATTTTGTGGGGCTCAGAATGTAAGAGCAGTC----TTTTTCAATGGAAACCTAAGAATTCAATGGAGCATGACATAGCATCaggaactttggtttcagggtcaaag-agctgaatgcagatttcgattctgccactta-ctgatgtcacgagttgga----tcatttagcatctctgaatactttccccatctacagaatagaataacacgatcatctctgccgatctccggactgactttcagtcttgagtaagagaatgcgtgtaaagtctttttata---ttgtgaagtacttcacaGTACCCATTACTGTTTATGTTAGTCCACCATGTCCTCC-TATTTCTGGGGCCTTTATGAAAAACTGGAAAAGATATTGAGTAC---CTTGGACATTTCCCAGGCCTT-------TTTCCAGTACAGAATACTCTTCCAAGTCCTG--TGATTTGTTAAGTCCTACCTCTGCCAGAATTTTATTGGTTAAGAATACTATAAATCCTCCACCGGC--------CTTCAGAGCATCTGAGGAGCTG---GCATGTTCCCATGCCAACTGGTAATCTGCTCAG-------CTCCGCTTTTCT------GTGCTTTGTCTCAGAGCTCCCTCTCGTGCCC-ATTTAGGGATCACACATTTCTGCTGCAACGGCCTGGTCTCCATGGCTACTTCATTATCTACATAGGCA--------------------CATAAGTT--TGC--TTTTCTCGCCCTT-GCATAAATTCTTCAGAGGCTGAATAGTTGATTCTGCAGCCTTTGATT-TTCTTGCTGTATTGAT---AGGAAAAAGAAGG-----GGAAAATCCT----CTTCTGCAGAATGTCCAGAAATCACACA--ACCTTCATTGACAGTCTG---------GCCAGTGAGACCAGCAATATTCAGAT-TCCTTTACAATACTGGTATCCAGAAGT----AGAGACCCCAGTTAAT---TCTATTGCTTAGGTTAGGCAAAGCCACTATGTTCTGCACTGTT------AGCACCAGCAGCGGC-----CACAGTGTCCTTCTAGTCTCTACAGGAAGTGAAATCAAGTAATGTCTATTTCCTCTGGATATCTGAAGAGAACACTGTGAAGCTGTG-TAGAAAACTCTGATA----GTTTTGTAGG-ATTACTGTTGTTAATGAATGATAAAT---GGACTAATTGACTTGGATTAGCTTTTACTGTATTTCCCCTGCCTAGCTATCA----CA------------GGTATATCTACATGAGGT----GGAGTGTGTGT----ATATGTGCTGGAAATTTTACTCCATAGTCACTTAGTCAA-GGTAGATATTGTATG
i calJac3.chr8             I 294 C 0
s mm10.chr6                 40392620 1389 + 149736546 AGTCTTAACATTCCCATTCTTAATCTTTCTAGAGCAAAGAGGATTTTATGAACATTTGCATTGAACCTGACACTGTCAGCAAAGGAGATTTCATAATCATAGGGTAAGTG---CCTGGTCTGTAGGAAATGGGGCTTCATCAAGGAACTGGTGTCCTCAAACCTTTCTATCCAGAGTGTGCTGT-CTGTCTAAGATGGAGACCTGCCAACGGCCTTGTCT-GTCTGGGAATTCTGGCCT----TCTTTTTTAG----AATGGAGCTGGCATGTGTACT--------------TTTGCCCTCTCTGCTCATTTTGGGAAGAACAGAACGT--TAACAGTC--TGCCTTTCCATTGAAATGAAAGAATTCGGTGTTTCAGGCC---GTGCTAAGGACTAT--CTATAGTCTCAGGG-AGCTTGAT--------------TGCCTCctcactggctctggaactctaa---ggcagttgacttgtctgagtccttt-ctcatctgtaaaatggaaggttatcatcatgtctact-acctgaggactacttgtcagTCTCAAGGAGG----------------CTTTTGACA---TTGAGTAGCACTTCCCGGCGACTTTTACTGCGCATGCTA-TTCACCTTGTTTTCC-CATTCCCAGAACATCAAGGACAAACTTGAAAGGACACTGAATATCTACTTGGACATTTCCTAGGC---TTCCCCTTTTCTAATACAGTAGACTCTTCCAAGTCCTGCCTGATTTGTTAACTCCTGCCTTGGCTGGAATTTCATTGGCTGAGTATTCTGTAAACTCT-------C-CAGACATCCTCAAAGTATCTAAGGAGCTGTATGTTCGTTCCCATGCCAACCCGTAATCTGCTCAG-------C------CTCCT------TTGCTTTGTCCTGGTGCTCCCTCTTGTGCCCAATTTAGGGATTGGACATTGCTCCTGCAGCAACTGTGTCTCCATGGCTGCATCATTATCTATTCCAGCA-TTGGCTGCAGCACACTTTTCATTAGTCTGTGT--TGTTCTCGCCTTTGATACAAATTCTTCAGATACTGAATGGTCCCTTCTGCAGCCTTTGATTACTCTCGCTGTA----T---GGGAAAAGGAA-GAAGGAAAAAAAGCCTGTCCCTTCCACAG--TGTGCATAAATCGCACAGTATCTTAAGTG--CGTCTA---------GCTAATGGGAGCAGCCATATTCAAATCTCCTTTATAAAACTGACACCCAAACCA----AAAAAACCC----ACTGTATCAATTAATTAAAT--------GGTATTATGTTCAGCATTCTT------TA----------AGC-------AAGTTTCCCTTTGGTCCTTAAGAGAAGTAAATTTGTGCAATGCATGCATCCACTAAATATCTCAATGAAACCTGATGAAGCTG-GTTCTGAAACTCTGATGA--CA------------------AATTCATACATGAAAAA-----------------------------------ATTGCTACTTCAAA------ATAACAA------------AAGAtttttttttgagac----aaagtct---------------------cttatagcccatgcttgcct--ttaa------------ctcc
i mm10.chr6                C 0 C 0
s canFam3.chr16             52067531 1553 -  59632846 AGTATTAATGTTAGTCTTCCTGACC-TTCTAGAGCAAAGAAGACTTTATGAACATCTGCATTGAACCCGACACTGTCAGCAAAGGAGACTTCATAACTATAGGGTAAGTGGGCTGGGGCTT-TAGGAAATGCTGGTT-----AAGTAGTTGGTATTCCAGCACATACTATTCAGGGT-CCTCATGAAGTCTAAGATGGAGACCCAACTTAGGACTTACGTGATTTGGGGA---CAGTATAGCCTCTTTCTTTCAAGTATTTGGGTTGACACAGAGAACGCACCTCTCCTACTCTGGACTTCCCTGTTCATTTTTGGAAAGTCAGAGTGTGGGGACAGCC--TGCCATTCCAATGAGAT-GAAGGATTCAGTgtagcatggcacagtgtccagaacttt--cttcagggtcaaagttgctggctacagatcttgattctgctacgt-cctggcctcatgacttggacaaaccctttaacttctgtgggcccttc-tctgtgtatagaagcgaat-atataatcacatctaactacttcaggattgtttttgagtctcaaacaagaggctgtatgggaaagtcttttTCACGGTGGTGAAGCATTTCACTATATCAGTTACAATTCATGCCAGTCCACCTTGTCCTGC----TTCCAGGGAAGTAATGGAAAACCTGAAAAGGTATTGAGTAC---CTTGGACAATCTCCAGGCTTTTCTCCT-TTTTCACTAGAAAATATCCTCC--AGTCCTGTCTGATTTGTTAAGCCTGACCTCTGCCAGAGTTTCATTGGTTACGAATGCTCTGAACCCT-------CCCAGCCAGCTTCAGCACATCCTAGGAGCCC---ACGTGTTGCCATGCCAACTGGTAATCTGCTAGGAGATTTTTTGTGTTTTTCTTTTTTGGTGCTTTGTCTCAGAGCTCCCTCTTGTGCTC-ATCTAAGGAGTAGACATTGCTGCTAGAGCAGCCCGGTCTCCATGGCTACCCCATTATCTGCGCCAGAACCCGGCAGTGAAATGTCTTTCATTGGTT--TGTGGTATTTTTGCCTTTGGTATAAATTCTTCAGATGCTGACTAGCCCATTCTGCAGGCTTTGCTT-CCCTTATTGTATCTGTCGTAGAATGAAGAA-A-----GGAAAAGCCTGTCTCCT----AGAGTGTCCAGAAGCCACACACAATCTCAATTGAGAGTGTGCCTCCCCCCTCCCCCCGGGCCAGT-GTACTCAAATCTCCTTCATAGTACTGACAGCTGAAAATAGAAAGAAAAACC----GAT---TATATTGCTTAATGTAGGTGAAGTCATTATGTTCCGCATCATTGCAATCATCATCTTCAGCAGCAGGAACATGGTTTCCTTTGGTCTCAAATAGGAAGTGAGATTAGGTAACGCCTGTTTCCTCTGGGTATTGGAATAGAACATTGTGAGGTTGCTCTAGAAAACTCTGAAGCTTCATATACTAAAGACTAATGTTATCATTTAATGGTAAAGAATGGACTAACTGACTTGGATTAACTTTTACT--CTTTCCACTGACCA------C----AACCAGCTCTCATTGGTATATGTGCATGAGGTGGAGGGAgtatgtgtgtgagtgtgtgtg----------------------------------------------
i canFam3.chr16            C 0 C 0

a score=144932.000000
s hg38.chr7_GL383534v2_alt     17315 44 +    119183 CCAAGTAGACCGCGTTATAAATAcagtcatcccacggtatcctt
s panTro4.chr7             143117568 44 + 161824586 CCAAGTAGACCGCGTTATAAATAcagtcatctcacggtatcctt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138921774 44 + 157549271 CCAAGCAGACCATGTTATAAATAcagtcatcccacggtatcctt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93059081 44 + 110113093 CCAAGTAGACCGTGTTATAAATAcagtcatcccacggtatcctt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180957399 44 + 198365852 CCAAATAGACTGTGTTATAAATAcagtcatcccacagtatcctt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174703296 44 + 192294377 CCAAATAGACTGTGTTATAAATAcagtcatcccacagtatcctt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163368770 44 + 180432695 CCAAATAGACTGTGTTATAAATACAGTCATCCCACAGTATCctt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110401232 44 + 127223203 CCAAATAGACTGTGTTATAAATAcagtcatcccacagtatcctt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23747984 44 - 128169293 CCAAGTAGACTGTGTTATAAATAcagtcatcccacggtatcctt
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40394009 42 + 149736546 ccaagtagctcaggctggatttaaacttctccctc--tatcctt
i mm10.chr6                C 0 I 98
e canFam3.chr16             52069084  0 -  59632846 C

a score=421268.000000
s hg38.chr7_GL383534v2_alt     17359 150 +    119183 ggggtattggttccaggacctccctcagataccaaaatccacaggttgtcaagccccttctatatagtggcacggtatttgcatagacttaggcacgtcctccctatgcacactaaatcatctctagattacttataatactcaatataa
s panTro4.chr7             143117612 150 + 161824586 ggggtattggttccaggacctccctcagataccaaaatccacaggttgtcaagtcccttctatatagtggcacggtattcgcatagacttacgcacgtcctccctatgcacattaaatcatctctagattacttataatactcaatataa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138921818 150 + 157549271 gggggattagttccaggacctccctcagataccaaaatccacaggttgtcaagtcccttctacatagtggtatggtatttgcatagacttaggtacgtcctccctatgcacattaaatcatctctagattacttataatactcaatataa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93059125 150 + 110113093 gggggattagttccaggacctccctcagataccgaaatccacaggttgtcaagtgccttctatatagtggcatggtattcgcatagacttaggcacgtcctccctatgcaccttaaatcatctctagattatttataatactcaatataa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180957443 148 + 198365852 gggggattggttccaggacctccctcagataccaaaatc--cagattctcaagtcccttctgtatagtggcagggtatttgcacagacgtatgcacatcctccctgtgtacattaaaccatctctagattacttatcatacccaacacaa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174703340 148 + 192294377 gggggattggttccaggacctccctcagataccaaaatc--cagattcttaagtcccttctgtatagtggcagggtatttgcacagacgtatgcacatcctccctgtgtacattaaaccatctctagattacttatcatacccaacacaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163368814 148 + 180432695 gggggattggttccaggacctccctcagataccaaaatc--cagatTCTCAAGTCCCTTCTATATAGTGGCATGGTATTTGCATAGACGTATGCACATCCTCCCTGTGGacattaaatcatctctagattacttataatacccaatacaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110401276 148 + 127223203 ggggggttggtcccaggacctccctcagataccaaaatc--cagattctcaagtcccttctatatggtggcatggtatttgcatagacatatgcacatcctccctgtggacattaaatcatctctagattacttacaatacccaatacaa
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23748028 148 - 128169293 gggggattggttccaggacctccctcagataccaaaatc--cagattctcaattcctttctatatagcagcatggtatttgcggagacttatgtacatcctccctgtgcatattaaatcatctctagattacttataatacccaatacaa
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40394051  98 + 149736546 I
e canFam3.chr16             52069084   0 -  59632846 C

a score=201117.000000
s hg38.chr7_GL383534v2_alt     17509 75 +    119183 tgtaaatgctatgtggatggttgctgtcctgtattctctaggggataagatagtctgtacggattcagtacaggt
s panTro4.chr7             143117762 75 + 161824586 tgtaaatgctatgtggatggttgctgtcctgtattctctaggggataagatagtctgtacggattcagtacaggt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138921968 75 + 157549271 tgtaaatgctatgtggatggttgctgtactgtattctctaggggataagatagtctgtacggattcagtacaggt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93059275 75 + 110113093 tgtaaatgctatgtggatggttgctgtactgtattctctaggggataagatagtctgtacggattcaggacaggt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180957591 73 + 198365852 tgtaaatgctatgtggatagttgctatactgtattctctaggggatgag--agtctgtgcagattcagtacagtt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174703488 73 + 192294377 tgtaaatgctatgtggatagttgctatactgtattctctaggggatgag--agtctgtgcagattcagtacagtt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163368962 73 + 180432695 tgtaaatgctatgtggATAGTTGCTGTACTGTATTCTCTAGGGGATAAG--AGTCTGTACATATTCAGTACAGTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110401424 73 + 127223203 tgtaaatgctatgtggatagttgctgtactgtattctctaggggataag--agtctgtacatattcagtacagtt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23748176 72 - 128169293 tgtaaatgctaggtgaatagttg---tactgtattgtctaggggataagatagtctgtacattttcagtacagat
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52069084 41 -  59632846 tgtctgtg-tgtgtgGAC---------------------------------AGTCTGTTAGTTTTCACTCCAAGG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40394051 98 + 149736546 I

a score=1141603.000000
s hg38.chr7_GL383534v2_alt     17584 407 +    119183 gcaa--aaatatgtattctctatcctcagttggttgaatccacgggagtgggacccacagataggaagggTTATCAGAGAACTTCTAAGACTAGTTGTTCAT----ATACATAAAAGAAATATCTACATTAAAGTAAAAATATTTTATCCTTCAAGT----AATCAC-AAGAAGTACCAAATACCAGACGTTTAGTACTTTTCCTAAA-----------------GAATTTCATTCTAATTTTTAAATTTGAGA----CTAACAATCTAAGAATTAGGTACATGTGGAATGATTATTTTTAAATCAAT--------------------------CAATTTTTAAATC-----------AAATTAAGAGCATTTCAGAGAAAGTCAT---AACTTCATGCCCAGTTCTC------------TACT-----------------TTCAGTC---TAGAATGTATCACAAGGCTAAGCAAGAATCACTGTTGGAAAAATTATTTACAGAATTCTA
s panTro4.chr7             143117837 403 + 161824586 gcaa--aaatatgtattctctatcctcagttggttgaatccacgggagtggaacccacagataggaagggTTATCAGAGAACTTCTAAGACTAGTTGTTCAT----ATACATAAAAGAAATATCTACATTAAAGTAAAAATATTTTCTCCTTCAAGT----AATCAC-AAGAAGTACCAAATACCAGAAGTTTAGTACTTTTCCTAAA-----------------GAATTTCATTCTGATTTTTAAATTTGAGA----CTAACAATCTAAGAATTAGGTACATGTGGAATGATTATTTTTAAATCAAT------------------------------TTTTAGATC-----------AAATTAAGAGCATTTCAGAGAAAGTCAT---AACTTCATGCCCAGTTCTC------------TACA-----------------TTCAGTC---TAGAATGTATCACAAGGCTAAGCAAGAATCACTGTTGGAAAAATTATTTACAGAATTCTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138922043 403 + 157549271 g-aa--aaatatgtattttctatcctcagttggttgaatccacaggagtgagacccacagataggaagggTTATCAGAGAACTTCTAAGACTAGTTGTTCAT----ATACATAAAAGAAATATCTACATTAAA--AAAAATATTTTCT--TTCAAGTAATAAATCAC-AAGAAGTACCAAATACCA---GTTTAGTACTTTTCCTAAA-----------------CAATTTCATTCTAATTTTTAAATTTGAGA----CTAACAATCCAAGAATTAGGTACATGTGGAATGATTATTTTTGCCTCAAT--------------------------CCATTTTTAAATC-----------AAATTAAGAGCATTTCGGAGAAAGTCAT---AACTTCATGCCCAGTTCTC------------TACA-----------------TTCAGTC---TAGAATGTATCACAATGCTAAGCAAGAATCACTGTTGGAAAAATTATTTACAGAACTCTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93059350 402 + 110113093 gcaa--aaatatgtattttctatcctcagttggttgaatccacaggagtgggacccacagataggaagggTTATC--AGAACTTCTAAAACTAGTTGTTCAT----ATACATAAAAGAAATATCTACATTAAAGTAAAAATATTTTC---TCCAAGT----AATCAC-AAGAAGTACCAAATACCAGAAGTTTAGTACTTTTCCTAAA-----------------GAATTTCATTCTGATTTTTAAATTTGAGA----CTAACAATCTATGAATTAGGTGCATGTGGAAGGATTGTTTTTAAATCAAT--------------------------CCATTTTTAAATC-----------AAATTAAGAGCATTTCGGAGAAAGTCAT---AACTTCATGCCCAGTTCTC------------TACA-----------------TTCAGTC---TAGAACGTATCACAATGCTAAGCAAGAATCGCTGTTGGAAAAATTATTTACAGAACTCTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180957664 449 + 198365852 gcaa--aaataggtattttctatcttcggttgcttgaatccacaggagtgggacccacagataggaagggTTATCAGAGAACTTCTAAGACTAGTTGTTGAT----ATACAGAA---AAATATCTACATTAAAGTAAAAATATTTTCTCCTTCAAGTAATAAATCAC-AAGAAGTACCAAATACCAGAAGTTTAGTACTTTTCCTAAAGA------------ATTGAATTTCATTCTAATTTTTAAATTTGAGA----CTAACAGTCTAAGAATTAGTTACATGTGGAATGATTatttttaaatcaatttttaaatcaaATTCATGTGGAATGATTATTTTTAAATCAATCAATTTTTAAATCAAGAGCATTTCGGAGAAAGTCAT---AACTTCATGCACAGTTCTC------------TACA-----------------TTCAGTC---TAGAATGTATCACAATGCTAAGCAAGAATCACTG-TGGAAAAATTATTTACAGAACTCTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174703561 412 + 192294377 gcaa--aaataggtattttctatcttcggttgcttgaatccacaggagtgggacccacagataggaagggTTATCAGAGAACTTCTAAGACTAGTTGTTCAT----ATACAGAA---AAATATCTACATTAAAGTAAAAATATTTTCTCCTTCAAGTAATAAATCAC-AAGAAGTACCAAATACCAGAAGTTTAGTACTTTTCCTAAAGA------------ATTGAATTTCATTCTAATTTTTAAATTTGAGA----CTAAGAGTCTAAGAATTAGCTACATGTGGAATGATTATTTTTAAATCAAT--------------------------CAATTTTTAAATC-----------AAATTAAGAGCATTTCGGAGAAAGTCAT---AACTTCATGCACAGTTCTC------------TACA-----------------TTCAGTC---TAGAATGTATCACAATGCTAAGCAAGAATCACTG-TGGAAAAATTATTTACAGAACTCTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163369035 407 + 180432695 GCAA--AAATAGGTATTTTCTATCCTCGGTTGCTTGAATCCACAGGAGTGGGACCCACAGATAGGAAGGGTTATCAGAGAACTTCTAAGACTAGTTGttcat----atacataa---aaatatctacattaaagtaaaaatattttctccttcaaGTAATAAATCAC-AAGAAGTACCAAATACCAGAAGTTTAGTTCTTTTCCTAAAGA------------ATTgaatttcattctaatttttaaatttgaga----ccaACAATCTGAGAATTAGTTACATGtggaatgattatttttaaatcaat--------------------------caatttttaaatc----------------aagAGCATTTCAGAGAAAGTCAT---AACTTCATGCACAGTTCTC------------TACA-----------------TTCAGTC---TAGAATATATCACAATGCTAAGCAAGAATCACTG-TGGAAAAATTATTTACAGAACTCTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110401497 404 + 127223203 gcaa--aaataggtattttctatcctcggttgcttgaatccacaggagtgggacccacatataggaagggTTATCAGAGAACTTCTAAGACTAGTTGTTCAT----ATACATAA---AAATATCTACATTAAAGTAAAAATATTTTCTCCTTCAAGTAATAAATCAC-AAGAAGTACCAAATACCAGAAGTTTAGTACTTTTCCTAAAGA------------ACTGAATTTCATTCTAATTTTTAAATTTGAGA----CTAACAATCTAAGAATTAGTTACATGTGGAATG---ATTTTTAAATCAAT--------------------------CAAATTTTAAATC----------------AAGAGCATTTCAGAGAAAGTCAT---AACTTCATGCACAGTTCTC------------TACA-----------------TTCAGTC---TAGAATGTATCACAATGCTAAGCAAGAATCACTG-TGGAAAAATTATTTACAGAACTCTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23748248 349 - 128169293 gcaaatatatatgtattgtctatcctcagttggttgaatccacaggagtgggacc--cagataggaa--gTCACCAGAGAACTTTTAAGACTAGTTG-------------------------TCTACATTAGAGTAGAAATATTTTCTCCTTCAAGT----AATCAC----AAGTACCAAATACCAGAAGTTTAGCACCTTTCCTAAAGT---------------TTATTTCATTCTAATTTTTAAATTTGAGA----CTAACAGTCTAATAATTAGGTACATGTGGAATCATT-------------T-------------------------------------------------------AAAAACAATTCAGA-AAAGTCAT---AACTTCATG--CAGTTCTC------------TACA-----------------TTCAGTC---TAGAATGTATTAAAATACTAAGTAAGAATCACTGCTGGGAAAATTATTTACAGAACTTTG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40394149 363 + 149736546 GCAA--AGGTAAGTGTGCT---------------------------AAGGAGGCTGTTATCTATGGAGAGTGATGAGAAAATAGCTAAGACTA----TTTAT----AAGGGTAAAAGCATTATCTACCCTAAAGCAG-AATAAATTGCCCTTCA--TAAAGGATCAC----AAGGACCAAGGAACAGAACTTTGATGCTTTCCTCAAATG------------ACTGAATTACATCTTAATTTTTACATTTGAGA----TGCACAACT----AGATAGATAGATGTAGAA---------------------------------------------CCATTTTAAAATT----------------AAGAAAATTGAGAGAAACTTCATGGCAGCTTTATG--CAGTTCTCACTCCACAGCAAGTCA-----------------GTCAGTCTCGTAGAATGTACCCCAACACT-GGTTAGAATCCC---AGGGAGACTTGTTCACTGAGCCCTG
i mm10.chr6                I 98 I 37
s canFam3.chr16             52069125 363 -  59632846 -GAA--AGATAG-----TACTATGCTAAGCAGACTG--TTAATAGGAATAGAATC-----------------ATCAG----------GAATTGGTTATTCATATACATACATAAAAGAAATGTGTAGAATAA---AAAAATGTTTTCTCCTTCAAGTAATGATACACTTACAAGTGCCAAATAAGACAAGTTTAGTACTTTTTCTAAAACTACTAAAAGTACTTTTCATTTCATTCTAATGTTTAAATTTCAGGTTTTTTAATAGCCCGAGGATTAGGTACA------------------GAATCACT--------------------------------------C---------------------------------TGTCTT---CACTTCATCCACAGTTCTC------------TACAGCAAGTTAACCTTCCTTCTCAATC---TAAAATATGTCACACTGCTAAGCAAGCATCATTG-TGGGAAAATTAGTCACAGAACGCCA
i canFam3.chr16            C 0 C 0

a score=204750.000000
s hg38.chr7_GL383534v2_alt     17991 61 +    119183 TGGCTTAATAGACCATCTGTCCACTTATGTAAGCTCATAAAAAGGGGGAAAGAAGTTGCTA
s panTro4.chr7             143118240 61 + 161824586 TGGCTTAATAGACCATCTGTCCACTTATGTAAGCTCATAAAAAGGGGGAAAGAAGTTGCTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138922446 61 + 157549271 TGGCTTAATAGACCATCTGTCCACTTATGTAAGCTCATAAAAAGGGGGAAAGAAGTTGCTA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93059752 61 + 110113093 TGGCTTAATAGACCATCTGTCCACTTATGTAAGCTCATAAAAAGGGGGAAAGAAGTTGCTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180958113 61 + 198365852 TGGCTTAATAGACCATCTGTCCACTTATGTAACCTCATAAAAAGGGGGAAAGAAGTTGCTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174703973 61 + 192294377 TGGCTTAATAGACCATCTGTCCACTTATGTAACCTCATAAAAAGGGGGAAAGAAGTTGCTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163369442 61 + 180432695 TGGCTTAATAGACCATCTGTCCACTTATGTAACCTCataaaaagggggaaagaagTTGCTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110401901 61 + 127223203 TGGCTTAATAGACCATCTGTCCACTTATGTAACCTCATAAAAAGGGGGAAAGAAGTTGCTA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23748597 61 - 128169293 TGGCTTAATAGACCATCTGTCCACTTATGTTACCTCATAAAAAAGGGGGAAAGAATTGCTA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52069488 53 -  59632846 TGGTTCAGCATAGCATGAGCTCGTCTATTTAATCTCAACAA--------AAGAACTTGATG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40394512 37 + 149736546 I

a score=8434115.000000
s hg38.chr7_GL383534v2_alt     18052 2613 +    119183 CATTGTTGCAACCTAGTGCAGTTGCCATCACTGGTCT-TAAGCTTGCTTTTTCCTGTGCTCACAGAAGTCGAAAGGTGAGAAACCCCAAGCTGCACGTGGAGGGCACGGAGTGTCTCCAAGCCAGCCAGTGCACTTTGCTTATCCCGGAGGTGAGTGGGGAAGGGGTCGGTAG--TCACAGCATTTGATTCGTTCGTCATCGGCCTGCCCCTCTGTGGTGTCCCATCCTTCCTCTCTGTTA--GCTGACC--TAGACTTAGGCACATATTGTGTGCCAAGCATTTTGCCAGGCTCTGGGTCATATTAGCGGGGAGCTGAAAAGGATGGCAGAATCTCCTTGGGAGTCATGGATTTAGAGTTGGACTTCTGAAGACTCCCATCGTTTTCGAACCAAGGTTCTTCCCTAAAGTGAGTTTTAGGTCTC---CT-----TTTATTTTTCCATATGTAAATAATGCAGAAGGTTACTACATTAAGAC-ACATAGAGAATTGTCTAGCTGGCAAATGTTAATAGTGGCT------TTTACTTTAACATTTTTTATAAAGGATCTGGAAGCAGTTTTCAGTTCAACACTGAATTTTTCTGTATTATGAAATGCCATGCTTAGAAT---AACCTATGTAAGTG-----AAAAAAAT--TGGAAATAGAATCTGGAATTGGGAGGTTATTCAATTGTCAATA---CGGAAAAAAAGGAGGCTCT---TCATAT-------AGCCTTTGAAGACATGTGGCCA-TATATTACTGTATTCAGACAAGAC-------TATAGGT-AAACAGAAGGTAT-CCCCATA-GTGACTGGCGTCACAGTTTC--GATAT---AAATATTGAATTAAATGCATGAGTTATGGAAGGGTTTCATAGA--CTGTAATGATATTAATGTTGATACACCTTGGGTATATCAAGCTAA---ACAAGTCTT-AGAGAATA---ATGAAAATGATCCAGCAGATACAATAGCATGTCATAAGAGAATTAGCTGTCTTTAT---------------------------------TTTTATTTGAGAAGGATTAGCATAATATAGAA--AGACTATGTAT----ATGAGTTCCT-----T--AAGACATGGCAGGACCCTTGCCTTTTAATACATATTTGAAAATTATAACCATGTTGTTCAAATCCCAAAATACTCTGGGAGGAGATAGGGGCC------------------------AAAAAAAGAAAATAAATCCTTTTTCATGGATGGTAGAATTAGGA-TGTTTCCAGAACCAGCACTGTGCCCATCGT--AGTAGGCACTGAATT-TTTTTT------------TGTAAAAGAACATTAGGATAGCTCCTCAAGAGAGGATGTTGTTTTCCATAATGAACTTCTTCTGGTGCTGCTGTGAGACCTCCAACTCCAGTAGGCCACTGATGTGT--TTGAGCTGTTCTGAATATTCTCTTCTCCCCAGGGAGCAGGGGGCTCTTTTAGCATTGACAGTGAGGAGTATGAAGCGATGCCTGTGGAGGTGAAACTGCTCCCCAGGAAGCTGCAGTTCTTCTGTGATCCTAGGAAGAGAGAACAGATGCTCACAAGCCCCACCCAGTGAGCA-GCAGAA-GACAAGCACTCTGAGACCACACTTTAGGCCACCGGTGGGACCAAAAGGGAACAG---GTGCCTCAGCCATCCCAACAGTGTCGTCAGAGGGTCCCCAGGGCATTTTCATGGCAAGTACCCCTCTGCCCCCACTCCAGCAGTGCTTCCCAAAG--TGTGCTCTGTCAC---CTGCTTTG----CAATCGGCTTCC-ATTAGCGCATGTTTTATTT-TGGTGTGACGGTTGG-CCCTCCTAAACACGGACTTTCCTCAGGCTGGTTCAAGACGGAAAAGGACTTTCTTCTGTTTTC----TTCCAAAGTGC--AACCACAGTGGAGAGCCCACGGTGG---GCTTAGCCTGCCTAGGCC---C--TTCCATTTCTCTTCTTTGACCGTGCTAGGA-ATTCC-AGGAAAGTGCATT--CCTGCCCTGGTGACCTTTTCCTATGTCTAGGCTCCTCCACAGGTGCTGCTATTTTGTGAGCTCCGGCTCCTGTTTAGCTTTTATTTCAGT--T--CTAACCTCAGTCCAGAAACATATGTGAGGTTGTTTCCCTCTTCAGCCACGGCTACAATACCGGAAAATGCTAGTTT---TTATTTATTTTTTTAAGTagtgcttcctaaatg---gtttgcatgagagccacctggggtacatgttgaaaact----tatttggggtctaccccaa-----acctaataacccaaatttggggatggggcccaggaatatgcattttta-----------aaaagtcatctgcccttcccaggtgattctgT-----AAGTTGTCCCTCAACTGTACTTGGAGA---AATCGTGTTTT--AAAGcagtagtccacaaa-------gtattctgctcatgtg--------cccccaaaagtattttgaaaaatcatgta-taccctcacccatctaagttgatatctaaaattttatctaagttggtatctaaaatttttcatgggaagttaaatagttgacaaagtatgtatttgctggtgtcgtgtaaatattggtattttaaaataaaaactgttacatcactattttaaacatatccagtacaatttaaatatcacaacaatttgacacccttcattcatttataaaaataaa----tgagctagttctttagtagttaaacatttcaaatt-------ggcttttctccttc-----tgtatttccataccacttttcagccaagaatcctatcataatgtaatctattat---
s panTro4.chr7             143118301 2614 + 161824586 CATTGTTGCAACCTAGTGCCGTTGCCATCACTGGTCT-TAAGCTTGCTTTTTCCTGTGCTCACAGAAGTCGAAAGGTGAGAAACCCCAAGCTGCACGTGGAGGGCACGGAGTGTCTCCAAGCCAGCCAGTGCACTTTGCTTATCCCGGAGGTGAGTGGGGAAGGGGTCCGTAG--TCACAGCATTTGATTCGTTCATCATCGGCCTGCCCCTCTGTGGTGTCCCATCCTTCCTCTCTGTTA--GCTGACC--TACACTTAGGCACATATTGTGTGCCAAGCATTTTGCCAGGCTCTGGGTCATATTAGCGGGGAGCTGAAAAGGATGGCAGAATCTCCTTGGGAGTCATGGATTTAGAGT-GGACTTTTGAAGACTCCCATCGTTTTCGAACCAAGGTTCTTCCCTAAAGTGAGTTTTAGGTCTC---CT-----TTTATTTTTCCATATGTAAATAATGCAGAAGGTTACTGCATTAAGAC-ACATAGAGAATTGTCTAGCTGGCAAATGTTAATAGTGGCT------TTTACTTTAACATTTTTTATAAAGGATCTGGAAGCAGTTTTCAGTTCAACACTGAATTTTTCTGTATTATGAAATGCCATGCTTAGAAT---AACCTATGTAAGTG-----AAAAAAAT--TGGAAATAGAATCTGGAATTGGGAGGTTATTCAATTGTCAATA---CGGAAAAAAAGGAGGCTCT---TCATAT-------AGCCTTTGAAGACATGTGGCCA-TATATTACTGTATTCAGACAAGAC-------TATAGGT-AAACAGAAGGTAT-CCCCATA-GTGACTGGCGTCACAGTTTC--GATAT---AAATATTGAATTAAATGCATGAGTTATGGAAGGGTTTCATAGA--CTGTAATGATATTAATGTTGATACACCTTAGGTATATCAAGCTAA---ACAAGTCTT-AGAGAATA---ATGAAAATGATCCAGCAGATACAATAGCTTGTCGTAAGAGAATTAGCTGTCTTTAT---------------------------------TTTTATTTGAGAAGGATTAGCATAATATAGAA--AGACTATG----------AGTTCCT-----T--AAGACATGGCAGGACCCTTGCCTTTTAATACATATTTGAAAATTATAACCATGTTGTTCAAATCCCAAAATACTCTGGGAGGAGATAGGGGCC------------------------AAAAAAAGAAAATAAATCCTTTTTCATGGATGGTAGAATTAGGA-TGTTTCCAGAACCAGCACTGTGGCCATCAT--AGTAGGCACTGAATT-TTTTTT-------------GTAAAAGAACATTAGGATAGCTCCTCAAGAGAGGATGTTGTTTTCCATAATGAACTTCTTCTGGTGCTGCTGTGAGACCTCCAACTCCAGTAGGCCACTGATGTGTGTTTGAGCTGTTCTGAATATTCTCTTCTCCCCAGGGAGCAGGGGGCTCTTTTAGCATTGACAGTGAGGAGTATGAAGCGATGCCTGTGGAGGTGAAACTGCTCCCCAGGAAGCTGCAGTTCTTCTGTGATCCTAGGAAGAGAGAACAGATGCTCACAAGCCCCACCCAGTGAGCA-GCAGAA-GACAAGCACTCTGAGACCACACTTTAGGCCACCAGTGGGACCAAAAGGGAACAG---GTGCCTCAGCCATCCCAACAGTGTCGTCAGAGGGTCCCCAGGGCATTTTCATGGCAAGTACCCCTCTGCCCCCACTCCAGCAGTGCTTCCCAAAG--TGTGCTCTGTCAC---CTGCTTTG----CAATCAGCTTCC-ATTAGCGCATGTTTTATTT-TGGTGTGACGGTTGG-CCCTCCTAAACACGGACTTTCCTCAGGCTGGTTCAAGACGGAAAAGGACTTTCTTCTGTTTTC----TTCCAAAGTGC--AACCACAGTGGAGAGCCCACAGTGG---GCTTAGCCTGCCTAGGCC---C--TTCCATTTCTCTTCTTTGACCGTGCTAGGA-ATTCC-AGGAAAGTGCATT--CCTGCCCTGGTGACCTTTTCCCATTTCTAGGCTCCTCCACAGGTGCTGCTATTTTGTGAGCTCCGGCTCCTGTTTAGCTTTTATTTCAGT--T--CTAACCTCAGTCCAGAAACATATGCGAGGTTGTTTCCCTCTTCAGCCACGGCTACAATACTGGGAAATGCTAGTTT---TTATTT----TTTTAAGTagtgcttcctaaatg---gtttgcatgagagccacctggggtacatgttgaaaactgatttatttggggtctaccccaa-----acctaataacccaaatttggggatggggcccaggaatatgcattttta-----------aaaagtcatctgcccttcccaggtgattctgT-----AAGTTGTCCCTCAACTGTACTTGGAGA---AATCGTGTTTT--AAAGcagtagtccacaaa-------gtattctgctcatgta--------cccccaaaagtattttgaaaaatcatgta-taccctcacccatctaagttgatatctaaaattttatctaagttggtatctaaaatttttcatgggaagttaaatagttgacaaagtatgtatttgctggtgtcgtgtaaatattggtattttaaaataaaaactgttacatcactattttaaacatatccagtacaatttaaatatcacaacaatttgacacccttcattcatttataaaaataaa----tgagctagttctttagtagttaaacatttcaaatttcaaattggcttttctccttc-----tgtatttccataccacttttcagccaagaatcctatcataatgtaatctattat---
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138922507 2556 + 157549271 CATTGTTGCAACCCAGTGCAGTTGCCATCACTAGTCT-TAAGCTTGCTTTTTCCTGTGCCCACAGAAGTCGAAAGGTAAGAAACCCCAAGCTGCACGCCGAGGGCACGGAGTGTCTCCAAGCCAGCCAGTGCACTTTGCTTATCCCGGAGGTGAGTGGGGAAGGGGTCGGTAG--TCACAGCATTTGATTCGCTCGTCATTGGCCTGCCCCTCTGCGGTGTCCCATCCTTCCTCTCTGTTA--GCTGACC--CACACttacgcacgtattgtgtgccaagcattctgccaggctctgggtcatattagccgggagctgaaaaggatggcagaatccccttcagagtcatggaTTTAGAGTTGGGCTTCTGAAGACTCCCATCGTTTTCGAGCCAAGGTTCTTCCCTAAAGTGAGTTTTAGGTCTC---CT-----TTTATTTTTCCACATGTAAATAATGCAGAAGGTTACTACATTAAGAC-ACATAGAGAATTGTCTAGCTGGCAAATGTTAATAGTGGCT------TTTACTTTAACATTTTTTATAAAGGATCTGGAAGCAGTTTTCAGTTCAACACTGAGTTTTTCTGTATTATGAAATGCCATGCTTAGAAT---AACCTATGTAAGTG-----AAAAAAAT--TGGAAATAGAATCTGGAATTGGGAGGTTATTCAATTGGCAATA---CGGAAAAAAAGGAGGCTCT---TCAGAT-------AGGCTTTGAAGACATGTGGCCATTATATTACTGTATTCAGACAAGAC-------TATAGGT-AAATAGAAGGTAT-CCCCATA-GTGACTGGCATCACAGTTTC--GACAT---AAATATTAAATTAAATGCATGAGTTATGGAAGGGTTTCATAGA--CTGTAATGATATTAATGTTGATATACCTTAGGTATATCAAGCTAA---ACACGTCTT-AGAGAATA---ATGAAAATGATCCAGCAGATATAATAGCTTGTCATAAGAGAATTAGCTGTCTTTCT------------------------CTA------TTTTTTTTGAGAAGGATTAGCATAATATAGAA--GGACTATGTAT----ATGAGTTCCT-----T--AAGACATGGCAGGACCCTTGCCTTTTAATACATATTTGAAAATTATAACCATTTTGTTCAAATCCCAAAATACTCCGGGAGGAGATAGGGGCC------------------------AAAAAAAGAAAATAAATCCTTTTTCATGGATGGTAGAATTAGGA-TGTTTCCAGAACCAACACTATGACCATCAT--AGTAGGCACTGAATT-TTTTT--------------GTAAAAGAACATTAGGATAA---CTCAAGAGAGGATGTTGTTTTCCATAATGAACTTCTTCTGGTGCTGCTGTGAGACCTCCAACTCCAGTAGGCCACTGATGTGGGTTTGAGCTGTTCTGAATATTCTCTTCTCCCCAGGGAGCAGGGGGCTCTTTTAGCATTGACAGTGAGGAGTATGAAGCGATGCCTGTGGAGGTGAAACTGCTCCCCAGGAAGCTGCAGTTCTTCTGTGATCCTAGGAAGAGAGAACAGATGCTCACAAGCCCCGCCCAGTGAGCA-GCAGAA-GACAAGCACTCTGAGACCACACTTTAGGCCACCGGTGGGACCAAAAGGGAACAG---GTGCCTCAGCCATCCCAACAGTGTCGTCAGAGGGTCCCCAGGGCATTTTCATGGCAAGTACCCCTCTGCCCCGACTCCAGCAGTGCTTCCCAAAG--TGTGCTCTGTCAC---CTGCTTTGCAATCAATCAGCTTCC-ATTAGCGCATGTTTTATTT-TGGTATGACGGTCGG-CCCTCCTAAACACGGACTTTCATCATGCTGGTTCAAGATGGAAAAGGACTTTCTTCTGTTTTC----TTCCAAAGTGC--AACCACAGTGGAGAGCCCACAGTGG---GCTTAGCCTGCCTAGGCC---C--TTCCATTTCTCTTCTTTGACCGTGCTAGGA-ATTCC-AGGAAAGTGCATT--CCTTTCCTGGTGACCTTTTCCTGTTTCTAGGCTCCTCCACGGGTGCTGCTATTTTGTGAGCTCCGGCTCCTGTTTAACTTTTATTTCAGT--T--CTATCCTCAAACCAGAAACGTATGCGAGGTTGT-------TTCAGCCCCGACTACAATATTGGAAAATGCTAATTT---TTATTT---TTTTTAAGTagtgcttcctaaatg---gtttgcatgagagccacctggggtacatgttgaaaact----gatttggggtccaccccaa-----acct---------aatttggggatgggacccaggaatatgcattttta-----------aaaagtcatctgcccttcccaggtgattctAT-----AAGTTGTCCCTCAGCCGTACTTGGAGA---AATAGTGTTTT--AAAGcagtggtccacaaa-------gtattctgctcatgtg--------cccccaaaagtattttgaaaaatcatgta-tcccctcagccatctaagttga------------------------catctaaaatttttcatgggaagttaaatagttgacaaagtatgtatttgctggtgtcatgtaaatattggtattttaaaataaaaactgttacatcactattctaaacatatccagtacaatttaaatatcacaacaa-------------------ttataaaaataaa----tgagctagttctttagtagttgaacatttcaaatt-------ggcttttctccttc-----tgtatttccataccacttttcagccaagaatcctatcataatgtaatctattat---
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93059813 2573 + 110113093 CATTGTTGCAATCTAGTGCAGTTGCCATCACTGGTCT-TAGGCTTGCTTTTTCCTGTGCCCACAGAAGTCGAAAGGTGAGAAACCCCAAGCTGCACGCCGAGGGCACGGAGTGTCTCCAAGCCAGCCAGTGCACTTTGCTTATCCCGGAGGTGAGTGGGGAAGGAGTCGGTAG--TCACAGCATTTGATTTGTTCGTCATCGGCCTGCCCCTCTGCGGTGTCCCATCCTTC----CTGTTA--GCTGACC--CACACTTAGGCACGTATTGTGTGCCAAGCATTTTGCCAGGCTCTGGGTCATAGTAGCGGGGAGCCGAAAAGGATGGCAGAATCCCCTTCGGAGTCATGGATTTAGAGTTGGACTTCTGAAGACTCCCATCGTTTTCAAAGCAAGGTTCTTCCCTAAAGTGAGTTTTAGGTCTC---TT-----TTTATTTTTCTATATGTAAATAATGC---AGGTTACTACATTAAGAC-ATATAGAGAATTGTCTAGCTGGCAAATGTTAATAGTGGCT------TTTACTTTAACATTTTTTATGAAGGATCTGGAAGCAGTTTCCAGTTCAACACTGAATTTTTCTGTATTATGAAATGCCATGCTTAGAAT---AACCTATGTAAGCG-----AAAAAAAT--TGGAAATAGAATCTGGAATTGGGAGGTTATTCAATTGGCAATA---CAGAAAAAAAGGAAGCTCT---TCAT----------GCCTTTGAAGACATGTGGCCATGATATTACTGTATTCAGACAAGAC-------TATAGGT-AAACAGAAGGTAT-CCCCATA-GTGACTGGCATCACAGTTTC--GATAT---AAATATTGAATTAAATGCATGAGTTATGGAAGGGTTTCATAGACTCTGTAATGATATTAATGATGATATACCTTAGGTATATCAAGCTAA---GCAAGTCTT-AGAGAATG---ATGAAAATGATCCAGCAGATATAATAGCTTGTCATAAGAGAATCAGCTGTCTTTAT---------------------------------TTTTATTTGAGAAGGATTAGCATAATACAG-----GACTATGTAT----ATGAGTTCCT-----TAAAAGACATGGCAGGACCCTTGCCTTTTAATACATATTTGAAAATTATAACCATGTTGTTCAAATCCCAAAATACTCTGGGAGGAGATAGGGGCC------------------------AAAAAGAGAAAATAAATCCTTTTTCATGGATGGTAGAATTAGGA-TGTTTCCAGAACCAGCACTGTGCCCATCAT--AGTAGGCACTGAATT-TTTTTT------------TGTAAAAGAACATTAGGATGACTCTTCAAGAGAGGATGTTGCTTTCC---ATGAACTTCTTCTGGTGCTGCTGTGAGACCTCCAACTCCAGTAGGCCACTGATGTGGGTTTGAGCTGTTCTGAATATTCTCTTCTCCCCAGGGAGCAGGGGGCTCTTTTAGCATTGACAGTGAGGAGTATGAAGCAATGCCTGTGGAGGTGAAACTGCTCCCCAGGAAGCTGCAGTTCTTCTGTGATCCTAGGAAGAGAGAACAGATGCTCACAAGCCCCACCCAGTGAGCA-GCAGAA-GACAAG--CTCTGAGACCACACTTTAGGCCACCGGTGGGACCAAAAGGGAACAG---GTGCCTCAGCCATCCCAACAGTGTCGTCAGAGGGTCCCCAGGGCATTTTCATGGCAAGTACCCCTCTGCCCCGACTCCAGCAGTGCTTCCCAAAG--TGTGCTCTGTCAC---CTGCTTTG----CAATCAGCTTCC-TTTAGCGCATGTTTTATTT-TGGTGTGACGGTCGG-CCCTCCTAAACACGGACTTTTCTCAGGCTGGTTCAAGATGGAAATGGACTTTCT--TGTTTTA----TTCCAAAGTAC--AACCACAGTGGGGAGCCCACAGTGG---GCTTGCCCTGCCTAGGCC---C--TTGCATTTCTGTTCTTTGACCGTGCTAGGA-ATTCC-AGGAAAGTGCATT--CCTTCCCTGGTGACCTTTTCCTATTTCTAGGCTCCTCCACGGGTGCTGCTGTTTTGTGAGCTCTGGCTCCTGTTTAGCTTTTGTTTCAGT--T--CTATCCTCAGTCCAGAAACGTATGTGAGGTTGTTTCCCTCTTCAACCATGGCTACAATACTGGAAAATGCTAGTTT---TTATTT----TTTTAAGcagtgcttcctaaatg---gtttgcatgagagccacctggggtacgtgttgaaaattggtttatttggggtccaccccaa-----accaaataacccaaatttggggatgggacccaggaatatgcattttt-------------aaagtcacccacccttcccaagtgattctgt-----aagttgtccctcaaccgtacttggaga---aATAA-GTTTT--AAAGcagtggcccacaaa-------gcattctgctcttgtg--------cccccaaaagtattttgaaaaatcatgta-tcccctcacccatctaagttga------------------------catctaaaatttttcatggaaagttaaatagttgacaaagtatgtatttgctggtgtcgtgtaaatattggtattttaaaataaaaactgttacatcactattttaaacatatccagtacaatttaaatatcacaacaatttgacacccttcattcatttctaaaaataaa----tgagctagttctgtagtagttgaacatttcaaatt-------ggcttttctccttc-----tgtatttccataccacctctcagccaagaatcctatcataatgtaatctattat---
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180958174 2588 + 198365852 CGTTGTTGCAACCTAATGCAGTTGCCATCACTGCTCT-TAAGCTTGCTTTTTCCTGTGCCCACAGAAGTCGAAAGGTGAGAAACCCCAAGCTGCACGCTGAGGGCACGGAGTGTCTCCAAGCCAGCCGGTGCACCTTGCTTGTCCCCGAGGTGAGTGGGGAAGGGGTCGGAAGATCCACAGCATTTGATTCGTTCGTCGTCGGCCTGCCCCTCTGCTGTGTCCCATCCTTCCTCTCTGTTA--GCTAACCcacacacttaggcacgtactgtgtgccaagcattttgccaggctctgggTCATATTAGCGGGGAGCCGAAAAGGATGGCAGAATCCCCTTCGGAGTCACGGATTTAGAGTTGGACTCTTGAAGACTCCCATCGTTTTCAAGCCAAGGTTCTTCCCTAAAGTGGTTTTTAGGTCTC---CT-----TTTATTTTTCCATATGTAAATAGTGCAGAAGGTGACTACATTAAGAC-----AGAGAATTGTCTAGCTGGCAAATGTTAATAGTTGCT------TTTACTTTAACATTTTATATAAAGGGTCTGGAAGCAGTTTTCAGTTCAACACTGAATTTTTCTGTATTACAAAATGCCATGCTTAGAAT---AACCTATGTAAGTG-----AAAAATA---TGGAAATAGAATCTGGAATTGGGAGGTTATTCAATTGGCAATT---TGGAAAA----GAGGCTCT---TCAGAT-------AGCCTTTGAAGACATGTGGCCATTATATTACTGTATTCAGACAAGAC-------TATAGGT-AAAGAGAAGGTAT-CCCCATA-GTGACTGGCATCACAGTTTC--GATAT---AAATATTGAATTAAATGCATGAGTTATGGAAGCGTTTCATAGACTCTGTAATGATATTAATGTGCGTATACCTTAGGGATATCAGGCTAa---gcaatgctg-agagaata---atgaaaatgatccagcagatataatagcttgtcataagagaattagctgtcttttt------------------------CTAT-----TTTTATTTGAGAAGGATTAGCATAATATAGAA--GGACTATGTTT----ATGAGTTCCT-----T--AAGACGTTGCAGGACCCTTGCCTTTTAATACATATTTCAAAATTATAACCATGTTGTTCAAATCCCAAAATACTCTGGGAGGAGATAGGGGCT------------------------AAAAAAAGAAAATAAATCCTTTTTCATGGATGGTAGAATTAGGA-TGTTTCCAGAACCAGCACTGTG-CCATCACAGAGTAGGCACTGAATG-TTTTT--------------GTAAAAGAACGTTAGGGTAA-TCCTCAAGACAGGATGTTGTTTTCCGTAATGAACTTGTTCTGGTGCTGTTGTGAGACC-CCAACTCCAGTAGGCCACTGATGTGGGTTTGAGCTGTTCTGAATATTCTCTTCACCCCAGGGAGCAGGGGGCTCTTTTAGCATTGACAGTGAGGAGTATGAAGCGATGCCTGTGGAGGTGAAACTGCTCCCCAGGAAGCTGCAGTTCTTCTGTGATCCTAGGAAGAGAGAACAGATGCTCGCAAGCCCCACCCAGTGAGCA-GCAGAA-GACAAGCGCTCTGAGACCACACTTTAGGCCACCGGTGGGACCAAAA--GAACAG---GTGCCTCAACCATCCCAACAGTGTCGTCAGAGGGGCCCCAGGGCATTTTCATGGCAAGTACCCCTCTGCCCCCACTCCAGCAGTGCTTCCCAAAG--CGTGCTCTGTCAC---CTGCTTTG----CAATCCGCTTCC-ATTAGTGCATGTTTTATTT-TGGTGTGACGGTCGG-CGCTCCTAAACACGAACTTTCCTCAGGCTGGTTCAAGATGGAAAAGGACTTTCTTCTGTTTTC----TTCCAAA-TGC--AACCACAGTGGAGAGCCCACAGTGG---GCTTAGCCTGCCTACGCC---C--TTCCATTTCTGTTCTTTGACCATGCTAGGA-ATTCC-AGGAAAGTGCATT--CCTTCCCTGGCGACCTTTTCCTATTTCTAGGCTCCTTCACGGGTGCTGCTGTTTTGTGAGCTCCGGCTCCCGTTTAGCTTTTAATTCAGT--T--GTATCCTCAGTCCAGAAATGTAGGCGAGGTTGGTTCCCTCTTCAGCCATGGCTACAATACTGTAAATTGCTAGTTT---TAATTT----TTTTAAGTagtgcttcctaaatg---gtttgcatgagagccatctggggtacatgttgaaaattgatttatttggggtctaccccaa-----acctaataaccc-aatttggggatggggtccaggaatatgcattttta-----------aaaagtcagctgcccttcccaggtgattctat-----aagttgtccctcaaccgtacttggaga---aATAGTGTTTT--AAAGcagtggtccacaaa-------gtattctgctcacgtgc-------cccccagaagtattttgaaaaatcatgtattcccctcacccatctaagttga------------------------catctaaaatttttcatgggaagttaaatagttgacaaagtatgtatttgctggtgtcatgtaaatattagtattttaaaataaaaactgttagatcagtattttaaacatatccagtacaatttaaatatcgtaacaatttgacacccttcattcatttataaaaataaa----tgagctagttctttagtagttgaacatttaaaatt-------ggcttttctccttc-----tgtatttctatactacttttcagccaagaatcctatcagaatgtaatctattat---
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174704034 2588 + 192294377 CGTTGTTGCAACCTAATGCAGTTGCCATCACTGCTCT-TAAGCTTGCTTTTTCCTGTGCCCACAGAAGTCGAAAGGTGAGAAACCCCAAGCTGCACGCTGAGGGCACGGAGTGTCTCCAAGCCAGCCGGTGCACCTTGCTTGTCCCCGAGGTGAGTGGGGAAGGGGTCGGAAGATCCACAGCATTTGATTCGTTCGTCGTCGGCCTGCCCCTCTGCTGTGTCCCATCCTTCCTCTCTGTTA--GCTAACCcacacacttaggcacgtactgtgtgccaagcattttgccaggctctgggtcatattagcggggagcCGAAAAGGATGGCAGAATCCCCTTCGGAGTCACGGATTTAGAGTTGGACTCTTGAAGACTCCCATCGTTTTCAAGCCAAGGTTCTTCCCTAAAGTGGTTTTTAGGTCTC---CT-----TTTATTTTTCCATATGTAAATAGTGCAGAAGGTGACTACATTAAGAC-----AGAGAATTGTCTAGCTGGCAAATGTTAATAGTTGCT------TTTACTTTAACATTTTATATAAAGGGTCTGGAAGCAGTTTTCAGTTCAACACTGAATTTTTCTGTATTACAAAATGCCATGCTTAGAAT---AACCTATGTAAGTG-----AAAAATA---TGGAAATAGAATCTGGAATTGGGAGGTTATTCAATTGGCAATT---CGGAAAA----GAGGCTCT---TCAGAT-------AGCCTTTGAAGACATGTGGCCATTATATTACTGTATTCAGACAAGAC-------GATAGGT-AAAGAGAAGGTAT-CCCCATA-GTGACTGGCATCACAGTTTC--GATAT---AAATATTGAATTAAATGCATGAGTTATGGAAGCGTTTCATAGACTCTGTAATGATATTAATGTTCGTATACCTTAGGTATATCAAGCTAA---GCAAGTCTT-AGAGAATA---ATGAAAATGATCCAGCAGATATAATAGCTTGTCATAAGAGAATTAGCTGTCTTTCT------------------------CTAT-----TTTTATTTGAGAAAGATTAGCATAATATAGAA--GGACTATGTTT----ATGAGTTCCT-----T--AAGACGTTGCAGGACCCTTGCCTTTTAATACATATTTCAAAATTATAACCATGTTGTTCAAATCCCAAAATACTCTGGGAGGAGATAGGGGCT------------------------AAAAAAAGAAAATAAATCCTTTTTCATGGATGGTAGAATTAGGA-TGTTTCCAGAACCAGCACTGTG-CCATCACAGAGTAGGCACTGAATG-TTTTT--------------GTAAAAGAACGTTAGGGTAA-TCCTCAAGACAGGATGTTGTTTTCCGTAATGAACTTGTTCTGGTGCTGTTGTGAGACC-CCAACTCCAGTAGGCCACTGATGTGGGTTTGAGCTGTTCTGAATATTCTCTTTACCCCAGGGAGCAGGGGGCTCTTTTAGCATTGACAGTGAGGAGTATGAAGCGATGCCTGTGGAGGTGAAACTGCTCCCCAGGAAGCTGCAGTTCTTCTGTGATCCTAGGAAGAGAGAACAGATGCTCGCAAGCCCCACCCAGTGAGCA-GCAGAA-GACAAGCGCTCTGAGACCACACTTTAGGCCACCGGTGGGACCAAAA--GAACAG---GTGCCTCAACCATCCCAACAGTGTCGTCAGAGGGGCCCCAGGGCATTTTCATGGCAAGTACCCCTCTGCCCCCACTCCAGCAGTGCTTCCCAAAG--CGTGCTCTGTCAC---CTGCTTTG----CAATCCGCTTCC-ATTAGTGCATGTTTTATTT-TGGTGTGACGGTCGG-CGCTCCTAAACACGAACTTTCCTCAGGCTGGTTCAAGATGGAAAAGGACTTTCTTCTGTTTTC----TTCCAAA-TGC--AAGCACAGTGGAGAGCCCACAGTGG---GCTTAGCCTGCCTACGCC---C--TTCCATTTCTGTTCTTTGACCGTGCTAGGA-ATTCC-AGGAAAGTGCATT--CCTTCCCTGGCGACCTTTTCCTATTTCTAGGCTCCTTCACGGGTGCTGCTGTTTTGTGAGCTCCGGCTCCTGTTTAGCTTTTAATTCAGT--T--GTATCCTCAGTCCAGAAATGTAGGCGGGGTTGGTTCCCTCTTCAGCCATGGCTACAATACTGTAAATTGCTAGTTT---TAATTT----TTTTAAGTagtgcttcctaaatg---gtttgcatgagagccatctggggtacatgttgaaaattgatttatttggggtctaccccaa-----acctaataaccc-aatttggggatggggtccaggaatatgcattttta-----------aaaagtcagctgcccttcccaggtgattctat-----aagttgtccctcaaccgtacttggaga---aATAGTGTTTT--AAAGcagtggtccacaaa-------gtattctgctcacgtgc-------cccccagaagtattttggaaaatcatgtattcccctcacccatctaagttga------------------------catctaaaatttttcatgggaagttaaatagttgacaaagtatgtatttgctggtgtcgtgtaaatattggtattctaaaataaaaactgttacatcactattttaaacatatccagtacaatttaaatatcgtaacaatttgacacccttcattcatttataaaaataaa----tgagctagttctttagtagttgaacatttcaaatt-------ggcttttctccttc-----tgtatttctatactacttttcagccaagaatcctatcagaatgtaatctattat---
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163369503 2586 + 180432695 CGTTGTTGCAACCTAATGCAGTTGCCATCACTGGTCT-TAAGCTTGCTTTTTCCTGTGCCCACAGAAGTCGAAAGGTGAGAAACCCCAAGCTGCATGCTGAGGGCACGGAGTGTCTCCAAGCCAGCCGGTGCACCTTGCTTGTCCCCGAGGTGAGTGGGGAAGGGGTCGGAAGATCCACAGCATTTGATTCGTTCGTCGTCGGCCTGCCCCTCTGCTGTGTCCCATCCTTCCTCTCTGTTA--GCTAACCCACACACTTAGGCACGTATTGTGTGCCAAGCATTTTGCCAGGCTCTGGGTCATATTAGCGGGGAGCCGAAAAGGATGGCAGAATCCCCTTCGGAGTCATGGATTTAGAGTTGGACTCTTGAAGACTCCCATCATTTTCAAGCCAAGGTTCTTCCCTCAAGTGGTTTTTAggtctc---ct-----tttatttttctatatgtaaataGTGCAGAAGGTGACTACATTAAGAC-----AGAGAATTGTCTAGCTGGCAAATGTTAATAGTTGCT------TttactttaacattttatataaaggatcTGGAAGCAGTTTTCAGTTCAACACTGAATTTTTCTGTATTACAAAATGCCATGCTTAGAAT---AACCTACAtaagtg-----aaaaaaa---tggaaatagaatCTGGAATTGGGAGGTTATTCAATTGGCAATA---CGGAAAA----GAGGCTCT---TCAGAT-------AGCCTTTGAAGACATGTGGCCATTATATTACTGTATTCAGACAAGAC-------TATAGGT-AAAGAGAAGGTAT-CCCCATA-GTGACTGGCATCACAGTTTC--GATAT---AAATGTTGAATTAAATGCATGAGTTATGGAAGCGTTTCATAGACTCTGTAATGATATTAATGTTCGTATACCTTAGGTATATCAAGCTAA---GCAAGTCTT-AGAGAATA---ATGAAAATGATCCAGCAGATATAATAGCTTGTCATAAGAGAATTAGCtgtctttct------------------------ctat-----ttttatttgagaaggaTTAGCATAATATAGAA--GGACTATGTTT----ATGAGTTCCT-----T--AAGACGTTGCAGGACCCTTGCCttttaatacatatttcaaaattataaccATGTTGTTCAAATCCCAAAATACTCTGGGAGGAGATAGgggct------------------------aaaaaaagaaaataaatcctttttcaTGGATGGTAGAATTAGGA-TGTTTCCAGAACCAGCACTGTG-CCATCATAGAGTAGGCACTGAATG-TTTTT--------------GTAAAAGAACGTTAGGGTAA-TCCTCAAGAGAGGATGTTGTTTTCCGTAATGAACTTGTTCTGGTGCTGTTGTGAGACC-CCAACTCCAGTAGGCCACTGATGTGGGTTTGAGCTGTTCTGAATGTTCTCTTC-TCCCAGGGAGCAGGGGGCTCTTTTAGCATTGACAGTGAGGAGTATGAAGCGATGCCTGTGGAGGTGAAACTGCTCCCCAGGAAGCTGCAGTTCTTCTGTGATCCTAGGAAGAGAGAACAGATGCTCGCAAGCCCTACCCAGTGAGCA-GCAGAA-GACAAGCGCTCTGAGACCACACTTTAGGCCACCGGTGGGACCAAAA--GAACAG---GTGCCTCAACCATCCCAACAGTGTCGTCAGAGGGTCCCCAGGGCATTTTCATGGCAAGTACCCCTCTGCCCCCACTCCAGCAGTGCTTCCCAAAG--TGTGCTCTGTCAC---CTGCTTTG----CAATCCGCTTCC-ATTAGTGCATGTTTTATTT-TGGTGTGACGGTTGG-CGCTCCTAAACACGAACTTTCCTCAGGCTGGTTCAAGATGGAAAAggactttcttctgttttc----ttccaaa-tGC--AACCACAGTGGAGAGCCCACAGTGG---GCTTAGCCTGCCTACGCC---C--TTCCATTTCTGTTCTTTGACCGTGCTAGGA-ATTCC-AGGAAAGTGCATT--CTTTCCCTGGCGACCTTTTCCTATTTCTAGGCTCCTTCACGTGTGCTGCTGTTTTGTGAGCTCCGGCTCCTGTTTAGCTTTTATTTCAGT--T--CTATCCTCAGTCCAGAAATGTAGGCGAGGTTGGTTCCCTCTTCAGCCATGGCTACAATACTGCAAAttgctagttt---ttattt----ttttaagtagtgcGTCCTAAATG---GTTTGCATGAGAGCCATCTGGGGTACATGTTGAAAATTGATTTATTTGGGGTCTACCCCAA-----ACCTAATAACCC-AATTTGGGGATGGGGTCcaggaatatgcattttta-----------aaaagtcagctgcccttcccaggtgattctgt-----aAGTTGTCCCTCAACCGTCCTTGGAGA---AATAGTGTTTT--AAAGCAGTGGTCCACAAA-------GTATTCTGCTCACGTGC-------CCCCCAgaagtattttgaaaaatcatgTA-TCCCCTCACCCATCTAAGTTGA------------------------CATCTAAAAGTTTTCATGGGAAGTTAAATAGTTGACAAAGTATGTATTTGCTGGTGTCGTGTAAATATTggtattctaaaataaaaactgttacaTCACTATTTTAAACATATCCAGTACAATTTAAATATCGTAACAATTTGACAcccttcattcatttataaaaataaa----tgagctagtTCTTTAGTAGTTGAACATTTCAAATT-------GGCTTTTCTCCTTC-----TGTATTTCTATACTACTTCTCAGCCAAGAATCCTATCAGAATGTAATCTATTAT---
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110401962 2579 + 127223203 CCTTGTTGCAACCTAATGCAGTTGCCATCACTGGTCT-TAACCTTGCTTTTTCCTGTGCCCACAGAAGTCGAAAGGTGAGAAACCCCAAGCTGCATGCCGAGGGCACGGAGTGTCTCCAAGCCAGCCGGTGCACCTTGCTTGTCCCCGAGGTGAGTGGGGAAGGGGTCGGTAGACCCACAGCATTTGATTCGTTCGTCGTCGGCCTGCCCCTCTGCTGTGTCCCATCCTTCCTCTCTGTTA--GCTAACCCACACACTTAGGCACGTATTGGGTGCCAAGCATTTTGCCAGGCTCTGGGTCATATTAGCGGGGAGCCGAAAAGGATGGCAGAATCCCCTTCGGAGTCATGGATTTAGAGTTGGACTCTTGAAGACTCCCATCGTTTTCAAGCCAAGGTTCTTCCCTAAAGTGGTTTTTAGGTCTC---CT-----TTTATTTTTCCATATGTAAATAACGCAGACGGTGACTACATTAAGAC-----AGAGAATTGTCTAGCTGGCAAATGTTAATAGTTGCT------TTTACTTTAACATTTTATATAAAGGATCTGGAAGCAGTTTTCAGTTCAACACTGAATTTTTCTGTATTACAAAATGCCATGCTTAGAAT---AACCTATATAAGTG-----AAAAAAA---TGGAAATAGAATCTGGAATTGGGAGGTTATTCAATTGGCAATA---CGGAAAA----GAGGCTCT---TCAGAT-------AGCCTTTGAAGACATGTGGCCATTATATTACTATATTCAGAAAAGGTATTCAGACATAGGT-AAAGAGAAGGTAT-CCCCATA-GTGACTGGCATCACAGTTTC--GATAT---AAATATTGAATTAAATGCATGAGTTATGGAAGCGTTTCATAGACTTTGTAATGATATTAATGTTCGTATACCTTAGGTATATCAAGCTAA---GCAAGTCTTAAGAGAATA---ATGAAAATGATCCAGCAGATATAATAGCTTGTCATAAAAGAATTAGCTGTCTTTCT------------------------CTGT-----TTTTATTTGAGAAGGATTAGCATAATATAGAA--GGACTGTGTTT----ATGAGTTCCT-----T--AAGACGTTGCAGGACCCTTGCCTTTTAATACATATTTCAAAATTATAACCATGTTGTTCAAATCCCAAAATACTCTGGGAGGAGATAGGGGCT------------------------AAAAAAAGAAAATAAATCCTTTTTCATAGATGGTAGAATTAGGA-TGTTTCCAGAACCAGCACTGTG-CCATCACAGAGTAGGCACTGAATGTTTTTT--------------GTAAAAGAACGTTAGGGTAA-TCCTCAAGAGAGGATGTTGTTTTCCGTAATGAACTTGTTCTGGTGCTGTTGTGAGACC-CCAACTCCAGTAGGCCACTGATGTGGGTTTGAGCTGTTCTGAATATTCTCTTCTCCCCAGGGAGCAGGGGGCTCTTTTAGCATTGACAGTGAGGAGTATGAAGCGATGCCTGTGGAGGTGAAACTGCTCCCCAGGAAGCTGCAGTTCTTCTGTGATCCTAGGAAGAGAGAACAGATGCTCGCAAGCCCCACCCAGTGAGCA-GCAGAA-GACAAGCGCTCTGAGACCACACTTTAGGCCACCGGTGGGACCAAAA--GAACAG---GTGCCTCAACCATCCCAATAGTGTCGTCAGAGGGTCCCCAGGGCATTTTCATGGCAAGTACCCCTCTGCCCCCACTCCAGCAGTGCTTCCCGAAG--TGTGCTCTGTCAC---CTGCTTTG----CAATCAGCTTCC-ATTAGTGCATGTTTTATTT-TGGTGTGACGGTCGG-CGCTCCTAAACACGAACTTTCCTCAGGCTGGTTCAAGATGGAAAAGGACTTTCTTCTGTTTTC----TTCCAAAGTGC--AA--------------CCACAGTGG---GCTTAGCCTGCCTACGCC---C--TTCCATTTCTGTTCTTTGACCGTGCTAGGA-ATTCC-AGGAAAGTGCATT--CCTTCCCTGGCGACCTTTTCCTATTTCTAGGCTCCTTCACGGGTGCTTCTGTTTTGTGAGCTCCGGCTCCTGTTTAGCTTTTATTTCAGT--T--CTATCCTCAGTCCAGAAATGTAGGCGAGGTTGGTTCCCTCTTCAGCCATGGCTACAATACTGTAAATTGCTAGTTT---TTATTT----TTTTAAGTagtgcttcctaaatg---gtttgcatgagagccacctggggtacgtgttgaaaattg----atttggggtccactccaa-----acctaataaccc-aaattggggatggggtccaggaatatgcattttta-----------aaaagtcagctgcccttcccaggtgattctat-----aagttgtccctcaaccgtacttggaga---aATAGTGTTTT--AAAGcagtggtccacaaa-------gtattctgctcacgtgc-------cccccagaagtattttgaaaaatcatgta-tcccctcacccatctaagttga------------------------catctaaaatttttcatgggaagttaaatagttgacaaagtatgtatttgctggtgtcgtgtaaatattggtattctaaaataaaaactgttacatcactattttaaacatatccagtacaatttaaatatcataacaatttgacacccttcattcatttataaaaataaa----tgagctagttctttagtagttgaacatttcaaatt-------ggcttttctccttc-----tgtatttctatactacttttcagccaagaatcctgtcagaatgtaatctattat---
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23748658 2546 - 128169293 CATTGTTGCAACCTAATGCAGTTGCCATCACTGGTCT-CAAGCTTGCTTTTTCCTGTGCCCGCAGAAGTCGAAAGGTGAGGAACCCCAAGCTGCATGCTGAGGGCACGGAGTGTCTCCAAGCCAGCCAGTGCACTTTGCTTGTCCCCGAGGTGAGTGGGGAAGGGGTCGGTAGTCCCACAGTGTTTGATTCATTCTTCGTCGGCCTGCCCCTCTGTT-TGTCCCCTCCTTC----CTGTTA--GCTGATC--TACACTTAG-----TATTATGTGGCAAGCATTTTTCCAGGCTCTGGCTCATATTAGGGGGGACTTGAAAAGGATGGCAGAATCTCCTT--------TGGATTTAGAGTTGGACTCCTTAAGACTCCCATCATTTTTGAGCCAAGGTTCT---------TGATTTTTAGGTCTC---CTAG--CTTTTATTTTCTGTATGTAAAAAATGCAGAAGTTTACTACATGAAGAT-GTACAGAGAATTGTCTAGCTGGCAAATGTTAATAGTGGCT------TTTACTTTAACATTTTTTACAAAGGATCTGGAAT--GTTTTTAGTTTAACACTGAATTTTTCTGTATTATGAAATGCCATGCTTAGAAT---AATCTATATAAGTG-----AAAAAAATA-TGGAAATAGAATCT-GAATTGTTAGGTTATTCAGCTGGCAATA---TGGAAAA-AAGGAGCCCTT---TCAGAT-------AGCCTTTGAAGACATGTGGCCATTATATTACTATATTCAGACAAGAC-------TA----T-AAACACAAGGTAT-CCCCATA-GCGACTGGCAT--CAGTTTT--GATAC---AAATATTGAATTAAATGCAT-----------GGCTTTCATAGATCCTGTAATGATATTAATGTTGACATACCTTAGGTGTA--AAGCTAA---GCAAGTCTT-AAAGAATA---ATGAAAATGATCCAGCAGATATAATAGCTTGTCATAAGAGAATTAGCTGTCT-------------------------------------TTTTATTTGAGAAGGATTAGCATAATATAGGACTATATTATGTTT----ATGAATTCCT-----T-AAAGATGTGTCAGGACCCTTGCCTTTTAATACATATTTGAAAATTATAACCA---TGTTCAAATCCCAAAATACTCTGGAAGGAGATAGGAGGC------------------------AAAAAAAGGAAGTAAATCCTTTCTGGTGGATGGTAGAATTAGGA-TGTTTCCAGAACCAGCACTGTGCCAAGCAT--AGTAGGCACTGAAGt-tttttttttttttttttttGTAAAAGAACATTAGGATAA-TGCTCAAGAGAGGATATT--TTCCCATAATGAACTTCTTCTGGTGCTGTTGAGAGACTTCCAATTCAAGCAGGCCAC-GATGTGGGTGTGAGCTGTTCTGAATATTCTCTTCTCCCCAGGGAGCCGGGGGCTCTTTTAGCATCGACAGTGAGGAGTATGAAGCAATGCCTGTGGAGGTGAAACTGCTCCCCAGAAAGCTGCAGTTCTTCTGTGATCCTAGGAAGAGAG---AGATGCTGGGAAGCCCCACCCAGTGAGCAGGCAGAA-GATAAGTGCTCTGTGACCACACTTTAGGCCACCGGTGGGACCGAAAGGAAACAG---GTGCCTCAACCATCCCAACAGTGTTGTCAGAGGGTCCCAAGGGCATTTTCA-GGCAAGTACCCCTCTACCCT--CTCCAGCAGTGCTTCCC--AG--TGTGCCCTGTCAC---CTGCTTTG----CAATCGGCTT-T-GTTAGCGCATGTTTTATTT-TGGTGTGATGGTCGA-CCCTCCTAAACACGAACTTTCCTCAGGCTGGTTCAAGATGGAAAAAGACTTTCTTCTGATTTC----TTCTGAAGTGC--AACCACAGTGGAGGGCCCACAGTGG---GCTTAGCCTGCCTAAGCC---CCATTCTTGTTCTGCTCTTTGACCGTGCTAGTA-ATTCCGGGGAAAGTGCCTT--ACTTCCCTGGTGACCCTTTCCTACTTCTAGGCTCTTCCATGGGTGCTGCTATTTTGTGAGCTCCGGCTTCTGTTTAGCTTTTATTTCAGTTCT--CTATCCTCAGTCCAGAAATGTATGTGAGGTTGTTTCCACCTCCAGCCATGGCTACAATACTGTAAAATGCTAGTTT---TTATTT----TTTTAAGTagtgcttcctaaacg---gtttgcatgagagccacctgggatgcatgttgaaaatt----tatttggggtccaccccaa-----acccaataaccc-aatttggggaaggggcccaggagtgtgcatttttt-----------aaaagttggccacccttcccaggtgattctgt-----aagttgtccctcaaccatacttggagaaATAATAGTGTTTTAAAAAAcagtggtccacaaa-------gtattctgctcatgtg--------cccccaaaagtattctgaaaaatcatgta-tcccctcacccatctaagttgc------------------------catctaaaaattttcatgggaagttaaatagttgacaaagtatgtatttgctggtgttgtgtaaatattgttattttaaaataaaaactgttatatcactattttaaacatatccagtaccatttaaatatc--aacaatttgacacccttcattca-ttataaaaataaa----tgagctagtttttta-tagttgaacattttaaatt-------ggcttttctccttc-----tgtatttccataccactt-tcagccaagagtcctgtcataatgtaatctaggat---
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40394549 2366 + 149736546 CTTTTCTGAGGTCTATTGCAGTTGCCATCAAAGATTC-CAACCTTGCTTTTTCTTATACTAATAGAAGTAAGAAGGTGAGAGACCCTGGCCTGCGTGCAGCTGGCACCGAGTGCCTCCAAGCCAGCCACTGTACTCTGGTTCTTCCTGAGGTAAGATGGA---------------CCACA-------AGCTGTTTTGAGTTGATTTGTCTTTTTCTCCATTTTCTTCCTCTTTCCATATTAACGCCTACC-----ATTTAGGTCCCTTCTGTTTAACAA-CTCGTTATCAGG-TCTGAGT-----TAAAGGAGACCAGAAAAGAAAGGCAAA---CGCTTCCATGCTACTGATTTGGAGCAGGCCTCT----GAGGCTTAGCGTCTCTAGGCCAAGGTTCTCCCTCGAAGTGATCCTTAGGTCCCTAACC-----TTTGCTTCTTC--ATGCCAGGAATGCAGAAGATGTTTATGATAGTATTATCTGAAGAATCTTCCATTTGGTGGGTAT------CGGGT------TTTATC------TTTCCTGTAAAG--------------------------------------TATGCTATAGAGTACCATTCTTAGAATAACAACTTTTGTAAATAGGAATAAAGAAG---TGGCGGTA----CTTGAATTG-AAGGTAACTTGACTGCT------------------GCGGCCCCAGGTCAGATTTACTCAGGCCTCTAAAGAGTTATGGCCATGCTGTTGCTGTACTGCATTGAAAC-------TGTAGGC-AAATGCAAGGTGT-TGACATGTGTGGCCAACAT---AATTTCATGGAGC---AAATGCTGAATTGAATG----AGCTATGGCAGGACTGCACAGG--GTCTAATGATACTAGTGTTGGCACATCCAAGTCTGAAGACCCTGA-------GTCTC-AGGGAATA---ATGAAAATGAATCAGTGGACACAA-AGTACCTCTCAGGAGTATCAGCTGCTTTTGCTAAGGAGACTTATTGTCTCTGGCCCTATAATCAATTTATTT--------TTTCCATAGTGGATATCCTGATTATGTTCTTTGACAATTTCATGTATCT--ATAATATGTAAATGCTCTTGCCTTCTGATAAATGTTTTAAAATTCTA---ATATTATTCAAGCTCCAAAGTGTTTCTTGAGATAGAAGGTTTC------------------------AAAGGA-------AAACCCCTCTCTGTGGACTAGAGAGTT--GA-TGCTTCCAGAACC-------------------AGTCAGGACTGAGAG-GTTTT-----------------------TGTTAGGCTGAGTCCTCTGCAGACG-------CTTCC----------------------------------TCA--TCCAGTAAG------------GTCCCAGTTGTGCTCAGTACTCGCCTCTCTCTAGGGAACTGAGGGCTCCTTCAGCATTGACAGCGAGGAGTACGAAGCCATGCCGGTGGAGGTCAAACTACTGCCCAGAAAGCTGCGGTTCTTCTGTGATCCGAGGAAGAGAGAGCAAATGCTGCCGAGCACATCCCAGTGAGCG-ACAGCGTGGCGGGCACTCCCAGGCTGCACTGCAAGCCACCAGTGGGACCACATGGGGGATGTGTGTGCTTCTGTC--CCCAGAGG----GTCACAGGATCCCAAGGGAATTTTCATGGCAAGTACCCC-CAGCC----CTCCTGT-TTGCTTCCTAGAGCACATACCATGTCATGCACTTGTTTG----TGGTCAGTACCCTGTTAACCCTCGCTTTCCTTATGTTGAGGTAGTTGATCCCTCTTACACA-GTGGTTGTCTCAGGCTGGGTCTAGA---------ACGTTCTTGTACTCCCTGAGTTGGGAAGGGCTGGAGTTTTGTGATTGTCCCACAGTGGAGAGTGGAATCTG--TAGACCAAGT--TCCTGTTTCGGTTCTCTGACCGTCCTGGGGCACCCC-GGGGAGGCAGCTG--CTGTCTCCGGGAGCCTCGCCCTCTTTCTGGGCTCTCTCATGGGTGCTGCTCCTTTGTGAGCTC----------------TCTGCTTTGGT--TGGTTGGTCTCATCCGGAAAGCAAATGTGAGGTTG-TTCCCTCTTTAGCCATGGCAGACGTATTGTAAAATGCTATTTT---AAAACA--------AACTagtgcttcctcattgttagtttgcatgtgtacaa-ctgaggcgcatgttgaaaactaactgacctgggacctacccccaggttgactttgtaactc-aacctggca--ggaagctagggttcttcattttta-----------aaaaactg-----cttccccaggtga--------------------atcAACCATACCGGGAGA---AA--GTGTTTT--AAATC--TACTTCATAAACTTAAATGtattatatatatata--------------------ttttttaaaatcacata-------------tttgtgttga------------------------catctattg-tttccatgggaagttaaacacttgtca----gtgtacttactagtattgtgtaaatattg---tttaaaaataaaaactgtttgatcattcttttaaacatatccagtgtaatctaaatg--------------caccccttat----ttataaaaattaactagtaaactagagttttactatttgaaatttttaaatt-------attttttttctcccttgggtatatttctatactactgtgaacaaaggaatttttttcttttttaatataacat---
i mm10.chr6                I 37 I 2750
s canFam3.chr16             52069541 2354 -  59632846 TGCTCTTGCAATTGAATG-AGTTGCCAGCCTTGGTTTCCAAATATGCTTTTTCCTGTACCCACAGAAGCAAAAAGGTGAGGGACCCCGAGCTGCGTGCGGCCGGCACCGAGTGTCTCCAGGCCAGCCAGTGCACTTTGCTGCTTCCTGAGGTGAGCAGGG---GTTCCCGTC---CCGCAGCTTCAGGTTCTTTCTTGGT----------------------CCAT-CTTCCTTTCGAGGA--ACAGACC--CTCATTTGGTTGCCCGGTATGGGCCGCGCCCTCGGCCAGGCTCTGGGTGATGGTGAGGAATACTTGAAAAG-ATGAGAGGACCCCCTTCTGAGTCAGGGGCTAAGCAGGGGACTCCTGAAGATTTCAAGTGTTTTTAAGCCACGATTCT---CTAAAGTGATCTTTACATCTC---CTGAGCCTCTATTTTTCTGAATGTACATTACATAG-AGGTTGCTATGTTATGAC---ACAGGGAATTCTCTAGTTGGCAGGTACT--CAGTGGATCCTACATTCACTTTTTCCTTTTTTATAAAGGATCTGGAA--AATCTTGGGGATGGCATTGAG-TTTTCTGTATTATGAAATGCCATGCTTAGAAT---AACCTATATAAGTG-----GGGAAAATGTTAGGAGTATAATCT-AAATTATATAGTTATTCTGTGCGCCCTGCCTCAGGAAA----GAGCTGCC---ACAGAT-------GGCTTCTGCAGACTTGGGCCCATTAT-CCAAGGTATTCAGAAAGGAT-------TGTAGGTAAAACGGAAGCTCTCCCCCACA-GTGGGTGGCACCGTAGTTTC--AACATAGCAAATGTTGAACTAAATGCATGAATTACGGAAG-GTTTTATAGAGTCTGTA---CCATTAATGTTGCCATATTTGAGG--TATCAAGCTACTATGCAAGTCCT-AAAGAAGAACCATGAACATAAGTGAGTGGACATCATGGCTT-TCCTAAGAG-----------------------------------------------------------GAGGGCTCAGAAGGTCCTAGAA--CATC-----------ATATGTTCCT-----G-AAAGACATGGGAGGACCCCTGTCGTTTAGTAAATATTTTTAAATTATA---GTCTTTCTCAAATCCCAAAATATTCTGGGAGGTGATAGAAGCCCCCCTGCCCCCCGCaaaaaaaaaaaaaaaaaaaaaaaaaa--------GATGGATGGGAGAATTGGGATTAGTTGCAGAAGCAGCACCAGA-CTTTaaa--aaaaaaaaaaaaaaa----------------------aaaaCAGCAGCGGGATCAGGCCTGAGGAGGAG-----------------GGGGTTGTCCAGGGGCAG-------------GACCCCGGCAGCCCATGGCTGGAG---TGAGCGGTCC--ACTCCCCTCTCCTCCACAGGGAACAGGGGGCTCTTTCAGCATCGACAGCGAGGAGTATGAGGCAATGCCGGTGGAGGTGAAGCTGCTCCCCCGGAAGCTGCAGTTCTTCTGCGACCCAAGGAAGAGGGAACAGGTGCTGCCCGGCGCAGCCCAGTGAGCT--------GGC---CGCCCCCACCCTGCACTTTAGGCC-TCGGTGGGACCAGCA-GGCACAG---CCTGCCCTGTCTGCCC------GTTGTCGCAGGATCCC-AGGGCACCTCCGTGGCAAGTACTCCCCCCCCCCCCCCCAAG--GCCCCCCCCAGAG--CATGTGCAGCCTC---C------G----CCGTCACCCTCG-------------------------------------CCCCCTCATCCACCGTGGTTTTCCAGGCAGGTC-----TGGGAGAGGCC---------CCCAC----GCCCCGGCTGC--AA-------------------GAGG---GCCTCCCCGGCCT----C---A--CCCCGGTTCTGTTCCTGCGCCCTCCTGGGA-CTTCA-------GCGCCTTGCCCACCCTCCGCACCTCCATCCTCTTTCCAGGCTTCCCCATTGGTGCTGTGACTTTCTGGGCTCAGATGCAAATTTAGCTTGT-TGGCAGT--T--CACCCTCCATCCTAAAGACACGCACAG---TGTTTCCATCTTCAGCCCGGGCTGAAAAACTATAAAAGGCCAGTTTGTATTATTT----TTTAAAGTAGCGCTTAAGTATTG---GTTtgcatgagaagcacctg-ggtgcatgttgacaatg----gacttggggtccaccccaa-----acctagtcactc-ggcctggggatggggcccaggaatctccatttctaaAAGAAAAAATAAAAGCAGGCACCCTCCCCCAGGTGCTTCTACTCCAGGAGGTG-CCCCCAGCCTCACCT--------GCCAGTGTTGT--A---CAGCATACCACTCC-------CTTTTCTGCTCATGCACCACCCCAccccgaaaaggattttgaaagatcatgta-tcccctcactt-tcta----ga------------------------tatc----------------aacttaagatgttgccaaagtatgtctttcctggtgtcatgtaaatatt---attttaaaat-aaaactgttatatcactcttttaaacatatttggttcaatttaaatgt-atagaaatttgacacttatcctccatttacaaaaataaa---------------------------------caaata-------ggtt------cttt-----ggtatttccattccactt-tcagcaaagaatgctatcacattgtgatctattttcat
i canFam3.chr16            C 0 C 0

a score=47074.000000
s hg38.chr7_GL383534v2_alt     20665 15 +    119183 gcccgacatctttta
s panTro4.chr7             143120915 15 + 161824586 gcccgacatctttta
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138925063 15 + 157549271 gcctgacatctttta
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93062386 15 + 110113093 gcctgacatctttta
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180960762 15 + 198365852 gcctgccatctttta
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174706622 15 + 192294377 gcctgccatctttta
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163372089 15 + 180432695 GCCTGCCATCTTTTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110404541 15 + 127223203 gcctgccatctttta
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23751204 15 - 128169293 gcctgacatctttta
i calJac3.chr8             C 0 I 13
s canFam3.chr16             52071895 12 -  59632846 gcctgaaatttt---
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40396915 2750 + 149736546 I

a score=1693367.000000
s hg38.chr7_GL383534v2_alt     20680 567 +    119183 atcattcaccccatta-cttcttgtcaac-aaaaaatataaatggaa-at-tt-tttttttagctcttgctttaagtgtttgtttgt-tatctcagtccagaaccaatattatcgtaattaattattggtatataatgaaaacggtattaat------------tcttggatgattaaaagttt--tttt-attagaatgttctttatcctaattagttcatttatccaagaatacatgaatgtgatttacagctgag-atgggg---ttcaacctcagctgtattccttg-----tttctgtatagatgtaagcacataaattcgatgg-----aatagaattacgttaacaatgtttttacagttctttggattcctttggcatt--ttgacaaagatcacagtgctct-a----tcatcaagaattattaatgatgatctatca-actaacaaacaacttgattagattctcctttagtctgttgaaagc-agagaactgaaatccacctgatttaccatggctttgccagccagtcattagcaccatttacttt---TACTATCGCTGACA---TTttcctttgttcagtggccctgaggttctt----acactcta
s panTro4.chr7             143120930 569 + 161824586 atcattcaccccatta-cttcttgtcaac-aaaaaatataaatggaa-at-tt-tttttttagctcttgcttt--------gtttgt-tatctcagtccagaaccaatattatcgtaattaattattggtatataatgaaaacggtattaat-------ataattcttggatgattaaaagttt--tttttattagaatgttctttatcctaattagttcatttatccaagaatacatgaatgtgatttacagctgag-atgggg---ttcaacctcagctgtattccttg-----tttctgtatagatgtaagcacataaattctatgg-----aatagaattacgttaacaatgtttttacagttctttggattcctttggcatt--ttgacaaagatcacagtgctct-a----tcatcaagaattattaatgatgatctatca-actaacaaacaacttgattagattctcctttagtctgttgaaagc-agagaactgaaatccacctgatttgccatggctttgccagccagtcattagcaccatttacttt---TACTATCGCTGACA---TTttcctttgttcagtggccctgaggttctttcttacactcta
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138925078 569 + 157549271 atcattcaccccattatcttcttgtcaac-aaaaaatataaatggaa-a--tt-tttttttagctcttgctttaagt----gtttgt-tatctcagtccagaaccaatgttatcataattaattattggtatataatgaaaacggtattaat------------tctttgatgattaaaagttg--tttt-attagaatgttctttatcctaattagttcattgatccaagaatacatgaatgtgatttacagctgag-atgggg---ttcaacctcagctgtattccttgtttcatttctttatagatgtaagcacataaattctatgg-----aatagaattatgttaacaatgtttttacagttctttggattcctttggaatt--ttgacaaagatcacagtgctctaa----tcatcaagaattattaatgatgatctatca-atcaactaacaacttgattagattctcctttagtctgttgaaaga-cgagaactaaaatccacctgatttgccaaggctttgccagccagtcattagcaccatttacttt---TACTATCGCTGACA---TTttcctttgttcagtgcccctgaggttctt----gcactcta
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93062401 545 + 110113093 atcattcaccccatta---tcttgtcaac-aaaaaatataaatggaataa-gt-ttttTTTAGCTC-----TTAAGT----GTTTGT-TAGCTCAGTCCAGAACCAATGTTATCG----TAATTACTGGTATATAATGAAAACGGTATTAAT-------ATAATTCTTTGATGATTAAAAGTTG--TTTT-ATTAGAATGttctttatcctaattagttcatttatcctagaatacatgaatgtgatttacagctgag-atgggg---ttcaacctcagctgtattccttgtttcatttctttataaatataagcacataaattccatgg-----aatcaaattacgttaacaatg-ttatacagttctttggattcctttggaatt--ttgacaaagatcacagtgctct-g----tcatcaagaattattaatgatgatctatca-act----aacaacttgattagattatcctttagtctgttgaaagc-agagaactaaaatccacctgatttgccaaggctttgccagccagtc-------------actTT---TACTACCGCTGATA---TTttcctttgttcagtgcccctgaggttctt----acactcta
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180960777 557 + 198365852 atcattcactccatta---tcttgtcaac-aaaaaatataaatggaa-ataagttttttttagttcttgctttaagt----gtt----tatctcagtccagaacaaatgttatca----taattattggtatataatgaaaacggtattaat-------ataATTCTTTGATGATTAAAAGTTG--TTTT-ATTAGAATGttttttatcctaattagttcatttatccaagaatacatgaatgtgatttacagctgag-atgggg---ttcaacctcagctgtattccttgtttcatttctttatagatgtaagcacataaattctatgg-----aacagaattatgttagcaatg-tcgtacagttctttgaattcctttggaatt--tcgacaaagatcacagtgccct-a----tcatcaagaattattaatgatgatctatca-act----aacaacttgattagattctcctttagtctgttgaaagc-agagaactaaaatccacctgatttgccagggttttgccagcgagtcattagCACC----GTTTT---TACTACCGCAGACA---TTttcctttgttcagtgcccctgaggttctc----acactcta
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174706637 560 + 192294377 atcattcactccatta---tcttgtcaac-aaaaaatataaatggaa-ataag-tttttttagttcttgctttaagt----gtttatctatctcagtccagaacaaatgttatca----taattattggtatataatgaaaacggtattaat-------ataattctttgatgattaaaagttg--tttt-attagaatgttctttatcctaattagttcatttatccaagaatacatgaatgtgatttacagctgag-atgggg---ttcaacctcagctgtattccttgtttcatttctttatagatgtaagcacataaattctatgg-----aacagaattatgttagcaatg-tcgtacagttctttgaattcctttggaatt--tcgacaaagatcacagtgccct-a----tcatcaagaattattaatgatgatctatca-act----aacaacttgattagattctcctttagtctgttgaaagc-agagaactaaaatccacctgatttgccagggctttgccagccagtcattagCACC----GTTTT---TACTACCGCAGACA---TTttcctttgttcagtgcccctgaggttctc----acactcta
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163372104 560 + 180432695 ATCATTCACTCCATTA---TCTTgtcaac-aaaaaatataaatggaa-ataag-tttttttAGTTCTTGCTTTAAGT----GTTTATCTATCTCAGTCCAGAACAAATGTTATCA----TAATTATTGGTATATAATGAAAACGGTATTAAT-------ATAATTCTTTGATgattaaaagttg--tttt-attaGAATGTTCTTTATCCTAATTAGTTCATTTATCCAAGAATACATGAATGTGATTTACAGCTGAG-ATGGGG---TTCAACCTCAGCTGTATTccttgtttcatttctttatagATGTAAACACATAAATTCTATGG-----AACAGAATTATGTTAGCAATG-TCGTACAGTTCTTTGAATTCCTTTGGAATT--TCGACAAAGATCACAGTGCCCT-A----TCATCAAGAATTATTAATGATGATCTATCA-ACT----AACAACTTGATTAGATTCTCTTTTAGTCTGTTGAAAGC-AGAGAACTAAAATCCACCTGATTTGCCAGGGCTTTGCCAGCCAGTCATTAGCACC----GTTTT---TACTACCGCAGACA---TTTTCCTTTGTTCATTGCCCCTGAGGTTCTC----ACACTCTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110404556 558 + 127223203 atcattcaccccatta---tcttgtcaac-aaaaaatataaatggaa-ataag-tttttttagttcttgctttaagt----gtttatctatctcagtccagaacaaatgttatca----taattattggtatataatgaaaacggtattaat-------ataattctttgatgattaaaagttg--tttt-attagaatgatctttatcctaattacttcatttatccaagaatacatgaatgtgatttacagctgag-atgggg---ttcaacctcagctgtattccttgtttcatttctttatagatgtaagcacataaattctatgg-----aacagaat--tgttagcaatg-tcatacagttctttgaattcctttggaatt--tcgacaaagatcacagtgccct-a----tcatcaagaattattaatgatgatctatca-act----aacaacttcattagattctcctttagtctgttgaaagc-ggagaactaaaatccacctgatttgccagggctttgccagccagtcattagcacc----atttt---ttctACCGCAGACA---TTttcctttgttcagtgcccctgaggttctt----acactcta
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23751232 540 - 128169293 atcattcaccccattatcttcttgtcaac-aaaaaatataaatggaa-g-----tttttttagttc---------------ttctgt-tatttaggtccagaacaaatgttatca-------ttattggtatataatgaaaa---tattaat--------------tctgatgattaaaagttg--tttt-attagaatgttccttaacctaattagttcatttgtccaagagtacatgaatgttatttacagctgag-atgggg---ttcaacctcagttgtattccttgtttcatttctttatagacgtaagcacgtaaattctatgggaatagaaagaagtatgttaccaatttttgtgcagttctttgaattcctttggaatt--ttgacaaaaatcacagtgctct-atcagtcatcaagaattattaataatgatctatca-att----aacaacttgattagattctcctttagt-tgttgaaagc-agagaactgaaatccccctgatttgcca----------aGCCTGTCATTCTCACCATTTACTTT---TCCTACCACTCACA---TTttcctttgtttagtgcccctgaggttctt-cttatactcta
i calJac3.chr8             I 13 C 0
s mm10.chr6                 40399665 526 + 149736546 ATCATtta--tcatttgcttttcatcagt-aaaatgtgtaaatctat-a--ac------------------ttaagt----at-----taacttattaccgagcaaatgttttta---acaattattagtatacattagaagaaataattatttgaataattatttttttgtaatt-acagtta--tgtt-attgggatgttcttgttcctaacttgtttatttaccc---aacatgtaaatattagtt-ctggtgag-ataaggatatccagtgtcagttacattcttt-tttaatttat---tatttttgagcccagaaagtagatga-----ctatgaatt---ctaacaact---------tttttataattgctttgaaattagaggggaaaaaccata-----ct-a----tttgc-attacaattaataatgatctttca-gct----aacaatttgattctatcttcctctagtctgctgcaagc-tgagaactgaaag-cacttgcctttctaaggagttgctacctggtctttaggatggtttactttTAATACTAGCATGGACA----TTTCCTTTGCT-AGTGCCC--GAAGGCCTT----GAACTCTA
i mm10.chr6                I 2750 I 34
s canFam3.chr16             52071907 489 -  59632846 atcacttgccttattt---tcttgccaacaaaaaaatataaatggaa-ataat-ttttt---------------aGT----GTTA---TGAGTTAATCCTGTACTGAGG----------TAATTACTGAAATACAACTGATAAAG-AATACT-------GCCAATTTTTGATAATTAAAAATTAACATTT-ATTAGAATGCTCTT-----TAATGAGTTCA--------AGAACAC------GTTGTTTACAGCTGAGAACAGGA---CTCAATGTCATTTATATTCCTTGTTGCGTTTCTG-ATAGTTCTAAGCCCCTAAATTAGACGA-----CAAAGGATTCT------AATG-TC------TTCTTTGAATTCCTTTGGAATT--CC-----AGATCAAAG-------G----t----------------tagtaatctaccacagt----aacagcttaattagatcttcttttagtttgttgaaagcaagagagccagaaactacctgattcgctaatgatttataagccgggctttataaccattcacttt---TACTACTACCGTCAGGATTTTCCAGGgtttggtgcccctgagggttct----gttctcca
i canFam3.chr16            C 0 C 0

a score=110363.000000
s hg38.chr7_GL383534v2_alt     21247 40 +    119183 gggggcagtgcaccacag---gaagatagat---------caatgagggagg
s panTro4.chr7             143121499 36 + 161824586 gggggcagtgcaccacag---gaagat-------------caatgagggagg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138925647 36 + 157549271 aggggcagtgcaccacag---gaagat-------------caatgagggagg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93062946 36 + 110113093 gggggcagtgcaccacag---gaagat-------------caatgagggagg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180961334 36 + 198365852 gggggcagtgcaccacag---gaagat-------------caatgagggagg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174707197 36 + 192294377 gggggcagtgcaccacag---gaagat-------------caatgagggagg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163372664 36 + 180432695 GGGGGCAGTGCACCACAG---GAAGAT-------------CAATGAGGGAGG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110405114 36 + 127223203 gggggcagtgcaccacag---gaagat-------------caatgagggagg
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23751772 36 - 128169293 gagggcagtgcgccacag---gaagat-------------caatgagggaag
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52072396 48 -  59632846 -gtagcaatgcctggaagcgaggagatgtgcaccttttcgtaaagagga---
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40400191 34 + 149736546 I

a score=998913.000000
s hg38.chr7_GL383534v2_alt     21287 332 +    119183 attgcga-gggggaaggggaggaagcagagctggcaggccttagct--acaggctctctctcaggcagatcccttttaag---a----------tacataCACC-ATGCCCACACATCCCAT-------GGAGAG---A---GACCAATGCTTTAGTAGATT----ACAGAACAGCTATGAAAAGTCCATGAATGAAGATCACAAAAAGGAAGGCTTTC---TTATTTCATACTG--TATTCTTCAG------------------------------------------------------------GGTGG---TAAAATTTCTGCTTT---TGGCAAAAA-CATAACAGACGGTTCCAAACATCAGCATAAAGATCACTCATCCCATACCACCCACAGGTAGGGAGGAAGGATGCTGTAGTATATGAAAACAAAAG
s panTro4.chr7             143121535 331 + 161824586 attgcga-gggggaaggggaggaagcagagctggcaggccttagct--acaggctctctc--aggcagatcccttttaag---a----------tacataCACC-ATGCCCACACATCC-------------GAG---A---GACCAATGCTTTAGTAGATT----ACAGAACAGCTATGAAAAGTCCATGAATGAAGATCACAAAAAGGAAGGCTTTC---TTATTTCATACTG--TATTCTTCAGTA---------TTCT-----------------------------------------TCAGGGTGG---TAAAAGTTCTGCTTT---TGGCAAAAAACATAACAGACGGTTCCAAACATCAGCATAAAGATCACTCATCCCATACCACCCACAGGTAGG----AAGGATGCTGTAGTATATGAAAACAAAAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138925683 341 + 157549271 attgcga-gggggaagaggaggaagcagagctggcaggccttagct--acaggctcactctcaggcagatcccttttaag---ataaagtaAAGTACATACACC-ACGCCCACACATCCCAT-------GGAGAG---A---GACCAATGCTTTAGTAGATT----ACAGAACAGCTATGAAAAGTCCATGAATGAAGATCACAAAAAGGAAGGCTTTCTTATTATTTCATACTG--TATTCTTCAG------------------------------------------------------------GGTGG---TAAAAGTTCTGCTTT---TAGCAAAAA-CATAACAGATGGTTCCAAACATCAGCATAAAGATCACTCATCCCATACCACCCACAGGTAGG----AAGAATGCTGTGGTATATGAAAACAAAAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93062982 326 + 110113093 attgcga-ggggga-----tggaagcagagctggcaggccttagct--acaggctcactctcaggcagatcccttttaag---a-----tagagtacataCACC-ATGCCCACACATCCCAT-------GGAGAG---A---GACCAATGCTTTAGTAGATT----ACAGAACAGCTATGAAAAGTCCATGAATGAAGATCACAAAAAGGAAGGC-------TTATTTCACACTG--TATTCTTCAA------------------------------------------------------------GGTGG---TAAAAGTTCTGCTTT---TAGTAAAAA-CATAACAGATGGTTCCAAACATCAGCATAAAGATCACTCCTCCCATACCACCCACAGGTAGGGAGGAAGGATGCTGTGGTATATGAAAAC--AAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180961370 344 + 198365852 attgcca-gggggaaggggaggaagcagagctggcaggccttagct--gcaggctctctctcaggcagatcccttttaag---a-----cagagtacataCACC-AGGCCCCCACATCCCATGGAGATGGGAGAG---A---GACCAATGCTTGAGTAGATT----ACAGAACAGCTATGAAAAGTCCATGAATGAAGATCACAAAAAGGAAGGCTTTC---TTATTTCACACTG--TATTCTTTAG------------------------------------------------------------GGTGG---TAAAAGTTCTGCTTT---TAGCAAAAA-CGTAACAGATGGTTCCAAACATCAGCATAAAGATCACTCATCCCATACCACCCACAGGTAGGGAGGAAGGATGCTGTGGTATATGAAAACAAAAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174707233 344 + 192294377 attgcca-gggggaaggggaggaagcagagctggcaggccttagct--gcaggctctctctcaggcagatcccttttaag---a-----cagagtacataCACC-AGGCCCCCACATCCCATGGAGATGGGAGAG---A---GACCAATGCTTGAGTAGATT----ACAGAACAGCTATGAAAAGTCCATGAATGAAGATCACAAAAAGGAAGGCTTTC---TTATTTCACACTG--TATTCTTTAG------------------------------------------------------------GGTGG---TAAAAGTTCTGCTTT---TAGCAAAAA-CGTAACAGATGGTTCCAAACATCAGCATAAAGATCACTCATCCCATACCACCCACAGGTAGGGAGGAAGGATGCTGTGGTATATGAAAACAAAAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163372700 344 + 180432695 ATTGcca-gggggaaggggaggaagcagAGCTGGCAGGCCTTAGCT--GCAGGCTCTCTCTCAGGCAGATCCCTTTTAAG---A-----CAGAGTACATACACC-ATGCCCCCACATCCCATGGAGATGGGAGAG---A---GACCAATGCTTGAGTAGATT----ACAGAACAGCTATGAAAAGTCCATGAATGAAGATCACAAAAAGGAAGGCTTTC---TTATTTCACACTG--TATTCTTTAG------------------------------------------------------------GGTGG---TAAAAGTTCTGCTTT---TAGCAAAAA-CGTAACAGATGGTTCCAAACATCAGCATAAAAATCACTCATCCCATACCACCCACAGGTAGGGAGGAAGGATGCTGTGGtatatgaaaacaaaag
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110405150 340 + 127223203 attgcga-gggggaaggggaggaagcagagctggcaggccttagct--gcaggctcactctcaggcagatcccttttaag---a-----cagagtacctaGACC-ATGCCCCCACATCCCATGGAGATAGGAGAG---A---GACCAATGCTTGAGTAGATT----ACAGAACAGCTATGAAAAGTCCATGAACAAAGATCACAAAAAGGAAGGCTTTC---TTATTTCACACTG--TATTCTTTAG------------------------------------------------------------GGCGG---TAACAGTTC----TT---TAGCAAAAA-CATAACAGATGGTTCCAAACATCAGCATAAAGATCACTCATCCCATACCACCCACAGGTAGGGAGGAAGGATGCTGTGGTATAGGAAAATAAAAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23751808 405 - 128169293 cctgcgaggggggaaagggaggaagcagagctggcaggcctgagctacacaggcttactctcaggcagatcccatttaag---g-----tagagtacataCACC-ATGCCCACACAACCCAT-------GGAGAG---ACACGACCAATGCTTTAGTGGATT----ACAGAACAGCTATGAAAAGTCCATGAATGAAGATCACAAAATGTAAGGCCTTC---TTATTTCACACTGTATATTCTTCAGGATGGTAAAATTTCTGCTTTTAGCAAAGACGTAACAGATGGTTGCAAACATCAGCATCAGGATGG---TAAAATTTCTGCTTT---TAGCAAAGA-CGTAACAGATGGTTGCAAACATCAGCATAAAGATCACTCATCCCATACCACCCACGGGTAGGGAGAAGGGATGCTGTGATATATGAAAATAAAAG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40400225 293 + 149736546 ATTGTGA-AAGGGAAAG--------------TGACA-CCCTTAGCA--GCAGG---AAGTGCAGAAAGATCAGAGTTAAATATA-----GACAGTA-ATAGACCTTTTCCTATGTGTCCCATT------GGAGTA---A---AACCAGTGTATGAACGGAGTGGACACACAGCACCTACAGAAAGTTCATAATTGAAGATCATGAAAAATAAGGC-TAC---CTATGCAGTTGTG--TGTGCTTATG-------------------------------------------------------------------------------CTTT-------------AGCAACAGAGGAGTCTGAAGGTCGGCGTAGA------CCACTTTGTGCCAAC--TGGGGAGGGAAAGGCACTGCTATGGTGTAAGGAAATAATAG
i mm10.chr6                I 34 I 465
s canFam3.chr16             52072444 304 -  59632846 agcatgg-gggataaagggggtaagtag-gaagcgatgccttggcc--acaggctcatccccaggcagatgggttttagg---a-----cag--TCCGTCTCCCTGTGCCCGTGAATCCCTT-------GGAGAGTGAA---GACCAATGCTTGAAAGCATT----ATGAAGCAGCTACAAAAGGCCAATGAAGGAAGATCACAAAAAACAAGGCTTAC---CTGTTAGGCTCTG--TATTCTTCAG------------------------------------------------------------AGTGGGGTCAAAAGCTGTGCTTTGCCCACCAAAAG-TA----GGTGGGTTCCAACCTGCAGTAGAAGGAG--------------TACCCACAGA-GGGGAGGAGGGA---------------------AAG
i canFam3.chr16            C 0 C 0

a score=1221726.000000
s hg38.chr7_GL383534v2_alt     21619 410 +    119183 TTTTCACCTGAGCTGAGA-GCATTT---AGCATATCGTGGTTCTGTAACAATATCAAGGACCAGTGCAGAATCTGGCTTTCTTTTC----TGATA-------GGCTACCAGTGTGTGTTTATGTGTGCTCATTTTGTGGTTCTAATC------ATAATGGTACATATAATTAGGGAAGGATATGGAAGCCACTTTAGAATCTT--ATTCATTTTTAAATATAAATATGCCTTGTTTCAAACTTTGTTTTCTTGATTCAGGCTTTCTTTCCTGTGAGGGCTTGGTTTCCTTATTGTTGACTGCTTTGTTCTTTGCCTTGTCCTTCCCTATAAAGCCTGCATGGAAGACGTTTAATAGTGCAACTAAAAGAGAGTCAGCTGAGTGAGGCTTGTCAGCCAAAGCTGGAATGCTGAGCTATCTGGAGGAGATCCTAA
s panTro4.chr7             143121866 402 + 161824586 TTTTCACCTGAGCTGAGA-GCATTT---AGCATATCGTGGTTCTGTAACAATATCAAGGACCAGTGCAGAATCTGGCTTTCTTTTC----TGATA-------GGCTACCAGTGTGTGCTTATGTGTGCTCATTTTGTGGTTCTAATC------ATAATGGTACATATAATTAGGGAAGGATATGGAAGCCACTTTAGAATCTT--ATTCATTTTTAAATATAAATATGCCTTGTTTCAAACTTTG--------ATTCAGGCTTTCTTTCCTGTGAGGGCTTGGTTTCCTTATTGTTGACTGCTTTGTTCTTTGCCTTGTCCTTCCCTATAAAGCCTGCATGGAAGACGTTTAATAGTGCAACTAAAAGAGAGTCAGCTGAGTGAGGCTTGTCAGCCAAAGCTGGAATGCTGAGCTATCTGGAGGAGATCCCAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138926024 408 + 157549271 TTTTCACCTGAGCTGAGA-GCATTT---AGCATATCGTGGTTCTGTAACAATATCAAGGACCAGTGCAGAATCTGGCTTTCTTTTC----TGATA-------GGCTACCAGTGTGTGTTTATGTGTGCTCATTTTGTGGTTCTAATC------ATAATGGTACATATAATTAGGGAAGGATATGGAAGCCACTTTAGAATCTT--ATTCATTTTTAAATATAAATATGCCTTGTTTCAAACTTTGTTTTCTTGATTCAGGC--TCTTTCCTGTGAGGGCTTGGTTTCCTTATTGTTGACTGCCTTGTTATTTGCCTTGTCCTTCCCTATAAAGCCTGCATGGAAGACGTTTAACAGTGCAACTAAAAGAGAGTCAGCTGAGTGAGGCTTGTCAGCCAAAGCTGGAATGCTGAGCTATCTGGAGGAGAacctaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93063308 408 + 110113093 TTTTCACCTGAGCTGAGA-GCATTT---AGCATATCCTGGTTCTGTAACAGTATCAAGGACCAGTGCAGAATCTGGCTTTGTGCTC----TGATA-------GGCTACCAGTGTGTGTTTATGTGTGCTCATTTTGTGGTTCTAATC------ATAATGGTACATATAATTAGGGAAGGATATGGAAGCCACTTTAGAATCTT--ATTCATTTTTAAATATAAATAGGCCTTGTTTCAAACTTTGTTTTCTTGATTCAGGC--TCTTTCCTATGAGGGCTTGGTTTCCTTATTGTTGACTGCTTTGTTCTTTGCCTTGTCCTTCCCTATAAAGCCTGCATTGAAGACGTTTAATAGTGCAACTAAAAGAGAGTCGGCTGAGTGAGGCTTGTCAGCCAAAGCTGGAATGCTGAGCTATCTGGAGGAGAACCTAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180961714 395 + 198365852 TTTTCACCTGAGCCGAGATTCATTT---AGCATATCGTGGTTCTGTAACAGTTCCAAGGACCAGTGCAGAATCTGGCTTTCTTCTC----TGATA-------GGCTACCAGTGTGTGTT--TGTGTGCTCATGTTATGGTTCTAATC------ATAATGGTACATATAACTGAGGAAGGATATGGAAGCCACTTTAGAACCCT--ATTCATTTTTAAATATAAAGATGCCTTGTTTC------------CTTGATTCAGGC--TCTTTCCTGTGAGGGCTTGGTTTCCTTATTGTTGACTGCTTTGTTCTTTGCCTTGTCCTTCCCCATAAAGCCTGCATGGAAGACGTTTAACAGTGCAACTAAAAGAGCGTGACCTGAGTGAAGCTTGTCAGCCAAAGCTGGAATGCTGAGCTATCTAGAGGAGAACCTAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174707577 395 + 192294377 TTTTCACCTGAGCCGAGATTCATTT---AGCATATCGTGGTTCTGTAACAGTTCCAAGGACCAGTGCAGAATCTGGCTTTCTTCTC----TGATA-------GGCTACCAGTGTGTGTT--TGTGTGCTCATGTTATGGTTCTAATC------ATAATGGTACATATAACTGAGGAAGGATATGGAAGCCACTTTAGAACCCT--ATTCATTTTTAAATATAAAGATGCCTTGTTTC------------CTTGATTCAGGC--TCTTTCCTGTGAGGGCTTGGTTTCCTTATTGTTGACTGCTTTGTTCTTTGCCTTGTCCTTCCCCATAAAGCCTGCATGGAAGACGTTTAACAGTGCAACTAAAAGAGCGTGACCTGAGTGAGGCTTGTCAGCCAAAGCTGGAATGCTGAGCTATCTAGAGGAGAACCTAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163373044 394 + 180432695 tttTCACCTGAGCCGAGA-GCATTT---CGCATATCGTGGTTCTGTAACAGTTCCAAGGACCAGTGCAGAATCTGGCTTTCTTCTC----TGATA-------GGCTAccagtgtgtgtt--tgtgtgctcATGTTATGGTTCTAATC------ATAATGGTACATATAACTGAGGAAGGATATGGAAGCCACTTTAGAAccct--attcatttttaaatataaagatgccTTGTTTC------------CTTGATTCAGGC--TCTTTCCTGTGAGGGCTTGGTTTCCTTATTGTTGACTGCTTTGTTCTTTGCCTTGTCCTTCCCTATAAAGCCTGCATGGAAGACGTTTACCAGTGCAACTAAGAGAGAGTGACCTGAGTGAGGCTTGTCAGCCAAAGCTGGAATGCTGAGCTATCTAGAGGAGAACCTAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110405490 396 + 127223203 TTTTCACCTGAGCCGAGA-GCATTT---AGCATATCGTGGTTCTGTAACAGTTTCAAGGACCAGTGCAGAATCTGGCTTTCTTCTCTAATTGATA-------GGCTACCAGTGTGTG----TGTGTGCTCATGTAATGGTTCTAATC------ATAATGGTACATATAATTAAGGAAGGATATGGAAGCCACTTTAGAATCTT--ATTCATTTTTAAATATAAATATGCCTTGTTTC------------CTTGATTCAGGC--TCTTTCCTGTGAGGGCTTGGTTTCCTTATTGTTGACTGCTTTGTTCTTTGCCTTGTCCTTCCCTATAAAGCCTGCATGGAAGACGTTTAACAGTGCAACTAAAAGAGAGTGACCTGAGTGAGACTTGTCAGCCAAAGCTGGAATGCTGAGTTATCTAGAGGAGAACCTAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23752213 392 - 128169293 TTTTCACCTGAGCTGAGA-GCATTT---AGCATATCGTGGTTCTGTAACAGTATCAAGGACCAGTGCAGAATCTGGCTT----CTT----TGCTA-------GGCTACCAGTGTGTATATGTGTGTGCTCATTTTTTGGTTCTAATC------ATAATGGTACATATAATTAGGGAAGGATATGGAAGCCACATTAGAATCTT-AATTCAGTTTTAAATATAAATATACCTTGTTTCAAGCTTTGTTT-CTTGATTCAGGC--TCTTTCCTGTGAGGGCTTGGTTTCCTTA---TTGACTGCTTTGTTCTTCGCCTTGTCCTTGCCCGTAAGGCCTGCATGGAAGATGTTTAACAATGCAACTAAAAGA---------GAGTGAGCCTTGTCACACAAAGCTGGAATGCTGAGCTATCTGGAGGAGAACCTAA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52072748 373 -  59632846 TTTCTGTAGGAGCCAGGA-GGGTCCTAAACCATCTTGGGTTTTGGATAGAATGTAAAGGACCAGTGCGGAAGCTGGCTCTCTTCCT----CGGTGATCGGCTGGCTACCAGCA--------TGTGGGTTTACTTAGCGATTCTGAGCCGTCCAGTGATGTTTAATAGA-------------------------TTAATATTTTTAATTCCTTTTGAAATCTGTG-ATCCCCGGTGGGAATCCTTT----CTTGATTCAAGC--TATTTCCTGCAAGAACACGGTTTCCGTATTGTTTATGGCCTTGTCCTTGGCACAGTCCTGGCGCACACCATCCGCATGAAGGACACCCAGCAGTGCAGCT-------------CTGAGAGCACCTTGTCGGCCAGGCTGGGACTGCGGAGGGGTC--GAGGACACCCTGA
i canFam3.chr16            C 0 I 205
e mm10.chr6                 40400518 465 + 149736546 I

a score=340476.000000
s hg38.chr7_GL383534v2_alt     22029 114 +    119183 TAACCCAATTTGGGGATGGGGCCCAGGAATCTGCA-TTGGGAAGTCGGCCACCCTTCCCAGGTGATT--GTTTAGTACAAACTTTTTGACAGATTAATTTCACTCAAATGCAAAGAT
s panTro4.chr7             143122268 114 + 161824586 TAACCCAATTTGGGGATGGGGCCCAGGAATCTGCA-TTGGGAAGTCGGCCACCCTTCCCAGGTGATT--GTTTAGTACAAACTTTTTGACAGATTAATTTCACTCAAATGCAAAGAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138926432 114 + 157549271 taacccaatttggggatggggcccaggaatctgca-ttgggaagtgggccacccttcccaggtgatt--GTTTAGTACAAACTTTTTGACAGATTAATTTCACTCAAATGCAAAGAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93063716 114 + 110113093 TAACCCAAtttggggatggggcccaggaatctgca-ttgggaagtcagccacccttcccaggtgatt--GTTTAGTACAAACTTTTTGACAGATTAATTTCACTCAAATGCAAAGAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180962109 116 + 198365852 TAACCCAATTTGGGGATGGGGCCCAGGAATCTGCA-TCGGGAAGCTGGCCACCCTTCCCAGGTGATTCCGTTTAGTACAAACTTTTTGACAGATTAATTTCACTCAGATGCAAAGAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174707972 116 + 192294377 TAACCCAATTTGGGGATGGGGCCCAGGAATCTGCA-TCGGGAAGCTGGCCACCCTTCCCAGGTGATTCCGTTTAGTACAAACTTTTTGACAGATTAATTTCACTCAGATGCAAAGAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163373438 116 + 180432695 TAACCCAATTTGGGGATGGGGCCCGGGAATCTGCA-TCGGGAAGTCGGCCACCCTTCCCAGGTGATTCCGTTTAGTACAAACTTTTTGACAGATTAATTTCACTCAGATGCAAagat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110405886 116 + 127223203 TAACCCAATTTGGGGATGGGGCCCGGGAATCTGCA-TCGGGAAGTCGGCCACCCTTCCCAGGTGATTCCGTTTAGTACAAACTTTTTGACAGATTAATTTCACTCAGATGCAAAGAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23752605 108 - 128169293 TAACCCAGTTCGGGGATGCGG---------CTGCATTTTTTAAGTCAGCCTCCCTTTCCAGGTGATTCTGTTTAGTACAAACTTTTTGACAGGTTAATTTCACTCAAATGCAAAGAT
i calJac3.chr8             C 0 I 10
e mm10.chr6                 40400518 465 + 149736546 I
e canFam3.chr16             52073121 205 -  59632846 I

a score=624841.000000
s hg38.chr7_GL383534v2_alt     22143 276 +    119183 taatcccagcactttgggaggccaaggaaggtggatcacctgaggtcaggagctcgagaccagcctggccaacgtggtgaaatcccatctctactaaaaatacaaaaattagctgggcatggtggcatgtgcctgtagtcccagctactctggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagccgggatcgcaccactctgcactccagcctgggtgacagagcaaga----------------------------------------------------------ctccgtctcaaaaaaaaaaaa----------a-aaaa
s panTro4.chr7             143122382 276 + 161824586 taatcccagcactttgggaggccaaggaaggtggatcacctgaggtcaggagctcgagaccagcctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagctgggcatggtggcatgtgcctgtagtcccagctactctggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagccaggatcgcaccactctgcactccagcctgggtgacagagcaaga----------------------------------------------------------ctctgtctcaaaaaaaaaaaa----------a-aaaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138926546 286 + 157549271 taatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagctcgagaccagcctggctaacatggtgaaatcccatctctactaaaaatacaaaaattagctgggcatggtggcatgtgcctgtagtcccagctactctggaggctgagacaggagaatcgcttgaacccgggaggcagaggttgcagtgagccgggatcgcaccactctgcactccagcctgggtgacagagcaaga----------------------------------------------------------ctccgtctcaaaaaaaaaaaaacaaacaaaca-aaca
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93063830 274 + 110113093 taatcccagcactttgggaggccgaggcaggtggatcacctgaagtcaggagttcgagaccagcctggccaacatggtgaaatccgatctctactaaaattacaaaaattagctgggcatggtggcatgcgcctatagtcccagctactctggaggctgaggcaggagaatcgcttgaacccgggaagcagaggttgcagtgagccgggatcacacca--ttgcactccagcctgggtaacagagcaaga----------------------------------------------------------ctccgtctcaaaaaaaaaaaa----------a-aaaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180962225 332 + 198365852 taatcccagcactttaggaggccaaggcgggtggatcacctgaggtcaggagttcgagaccagcctcgccaacatggtgaaatcccgtctctactaaaaatgcaaaaattagctgggtgtggtggcaggcgcctgtagtcccagctactctggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagctgggatcacacca--ctgcactccagcctgggtgacagagcaagactccatctcaaaaaaaacaaaaaCCATAGCTGCTTTCTGTAAGATAGAGTTTAAGATGCTCCATCTCAAAAAAAACAAA----------C-AAAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174708088 274 + 192294377 taatcccagcactttaggaggccaaggcgggtggatcacctgaggtcaggagttcgagaccagcctcgccaacatggtgaaatcccgtctctactaaaaatgcaaaaattagctgggtgtggtggcaggcgcctgtagtcccagctactctggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagctgggatcacacca--ctgcactccagcctgggtgacagagcaaga----------------------------------------------------------ctccatctcaaaaaaaacaaa----------c-aaaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163373554 275 + 180432695 taatcccagcactttaggaggccaaggcgggtggatcacctgaggtcaggagttcgagactagcctcgccaacatggtgaaatcccgtctctactaaaaatgcaaaaattggctgggtgcggtggcaggcgcctgtagtcccagctactctggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgggatcacacca--ctgcactccagcctgggtgacagagcaaga----------------------------------------------------------ctccatctcaaaacaaacaaa----------caaaaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110406002 264 + 127223203 taatcccagcactctgggaggccaaggcgggtggatcacctgaggtcaggagttcgagaccagcctcgccaccatggtgaact-ctgtctctactaaaaatgcaaaaattagctgggtgtggtggcaggcgcctgtagtcccagctactctggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccaggatcacacca--ttgtactccagcctgggtgacagagcaaga----------------------------------------------------------ctccatcacaaaa--------------------aaaa
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40400518 465 + 149736546 I
e canFam3.chr16             52073121 205 -  59632846 I
e calJac3.chr8              23752713  10 - 128169293 I

a score=1086409.000000
s hg38.chr7_GL383534v2_alt     22419 377 +    119183 aaaaaaa---CCGTAGTTGCTTTCTATTAAGATAG----GGTTTTAAATAAAGC----------TTTTTTCCTTTCCCTCACAGCTGTTTTGCACATATCTGGATGCAGTTATATTTCCTAAGTGCCagtgcttcacatatgtaactgatgcatcagttctcacaacaaccctaggaagtagctacaggttgagcatccctaatctgaaaaggcgaaatctgaaatgctccaaaatccgaaagtttttgagtgccaccatgatccttaaaggaagtgcccagtggaacattttggattttggatttataatgcaaagattctaaaatcctaaaacatctgaaatctgaaaatacttctaagtcccaagcatttcgaataagggatactcagcct
s panTro4.chr7             143122658 384 + 161824586 aaaaaaaaaaCCGTAGTTGCTTTCTATTAAGATAGATAGGGTTTTAAATAAAGC----------TTTTTTCCTTTCCCTCACAGCTGTTTTGCACATATCTGGATGCAGTTATATTTCCTAAGTGCCagtgcttcacatatgtaactgatgcatcagttctcacaacaaccctaggaagtagctacaggttgagcatccctaatctgaaaaggcgaaatctgaaatgctccaaaatccgaaagtttttgagtgccaccatgatccttaaaggaagtgcccagtggaacattttggattttggatttataatgcaaagattctaaaatcctaaaacatctgaaatctgaaaatacttctaagtcccaagcatttcgaataagggatactcagcct
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138926832 381 + 157549271 aacaaaaaaacCGTAGTTGCTTTCTATTAAGACAG----GATTTTAAATAAAGCT---------TTTTTTCCTTTCCCTCACAGCTGTTTTGCACATATCTGGATGCAGTTATATTTCCTAAGTGCCagtgcttcacatatgtaactgatgcatcagttctcacaacaaccctaggaagtagctacaggttgagtatccctaatctgaaaaggtgaaatctgaaatgctccaaaatccgaaagtttttgagtgccaccatgatgcttaaaggaagtgcccagtggaacattttgggttttggatttataatgcaaagattctaaaatcctaaaacatctgaaatctgaaaatacttctaagtcccaagcatttcgaataagggatactcagcct
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93064104 371 + 110113093 aaTA------CCGTAGTTGCTTTCTA-TGAGATAG----GGTTTAAAATAAAGC----------TTTTTTCCTTTCCCTCACAGCTGTTTTGCACATATTTGGATGCAGTTATATTTCCTAAGTGCCagtgcttcacatatgtaactgatgcatcagttctcacaacaaccctaggaagtagctacaggttgagcatccctaatctgaaaaggtgaaatctgaaatgctccaaaatccg--agtttttgagtgccaccatgatgcttaaaggaagtgcccagtgaaacattttgggttttggatttataatgcaaagattctaaaatcctaaaacgtctgaaatctgaaaatacttctaagtcccaagcatttcgaataagggatactcagcct
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180962557 379 + 198365852 A---------CCATAGTTGCTTTCTG-TAAGATAG----AGTTTAAGATAAAGTTTATAAAGC-TTTTTTCCTTTCCCTCACAGCTGCTTTGCACATATTTGGATGCAGTTATATTTCCTAAGTGCCagtgcttcacatatgtaactgatgcatcggttctcacaataaccctaggaagtaggtacaggttgagcatccctaatctgaaaaggtgaaatctgaaatcctccaaaatccaaaactttttgagtgccaccatgatgcttaaaggaagtgcccagtggaacattttggggtttggatttataatgcaaagattctaaaatcctaaaacatctgaaatctgaaaatacttctaagtcccaagcattttgaataagggatactcagcct
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174708362 379 + 192294377 a---------CCATAGTTGCTTTCTG-TAAGATAG----AGTTTAAGATGAAGTTTATAAAGC-TTTTTTCCTTTCCCTCACAGCTGCTTTGCACATATTTGGATGCAGTTATATTTCCTAAGTGCCagtgcttcacatatgtaactgatgcatcggttctcacaataaccctaggaagtaggtacaggttgagcatccctaatctgaaaaggtgaaatctgaaatcctccaaaatccaaaactttttgagtgccaccatgatgcttaaaggaagtgcccagtggaacattttggggtttggatttataatgcaaagattctaaaatcctaaaacatctgaaatctgaaaatacttctaagtcccaagcattttgaataagggatactcagcct
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163373829 375 + 180432695 a---------ccatagtTGCTCTCTG-TAAGATAG----AGTTTAAGATAAAGTTTATaaagc-ttttttccttt-cctcacaGCTGCTTTGCACATATTTGGATGCAGTTATATTTCCTAAGTGCCAGTGCTTCACATATGTAACTGATGCATCGGTTCTCAC---AACCCTAGGAAGTaggtacaggttgagcatccctaatctgaaaaggTGAAATCTGAAatcctccaaaatccaaaactttttgagtgccaccATGATGCTTAAAGGAAGTGCCCAGTGGAACATTTTGGGGTTTGGATTTATAATGCAAAGATTCTAAAATCCTAAaacatctgaaatctgaaaatacTTCTAagtcccaagcattttgaataagggaTACTCAGCCT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110406266 379 + 127223203 a---------CCACAGTTGCTTTCTG-TAAGATAG----AGTTTAAGATAAAGTTTATAAAGCTTTTTTTCCTTTCCGTCACAGCTGCTTTGCACATATTTGGATGCAGTTATATTTCCTAAGTGCCagtgcttcacacatgtaactgatgcatcggttctcacaataaccctaggaagtaggtacaggttgagcatccctaatctgaaaaggtgaaaactgaaatcctccaaaatccaaaactttctgagtgccaccatgatgcttaaaggaagtgcccagtggaacattttgggg-ttggatttataatgcaaagattctaaaatcctaaaacatctgaaatctgaaaatacttctaagtcccaagcatttcgaataagggatactcagcct
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23752723 364 - 128169293 ---AAAAATACCGTAGTTGCTTTCTC-TAAG--------AGCTTAACATAAAGC----------TTTTTTCTTT--CCTCATAGCTACTTTGCACCTATTTGTATGCAGTTATAATTCCTATGTGCCagtgcttcacacacgtaactgatacatcagttctcacaacaaccctaggaagtagctacaggttgagcatccctaatctgaaaaggcaaaatcggaaatgctccaaaatctgaaactt------tgccaccatgatgcttaaaggaagtgcccagtggaacattttgggttttggatttataatgcagagattctaaaatcctaaaacatgtgaaatctgaaaatacttctaagtcccaagcatttcaaataagggatactcagtct
i calJac3.chr8             I 10 C 0
e mm10.chr6                 40400518 465 + 149736546 I
e canFam3.chr16             52073121 205 -  59632846 I

a score=77210.000000
s hg38.chr7_GL383534v2_alt     22796 25 +    119183 gTAATAATATATG----GTTACATAGCAC
s panTro4.chr7             143123042 25 + 161824586 gTAATAATATATG----GTTACATAGCAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138927213 25 + 157549271 gTAATAATATACg----gttacatagcac
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93064475 25 + 110113093 gTAATAATATATG----GTTACATAGCAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180962936 25 + 198365852 gTAATAATATATg----gttacatagctc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174708741 25 + 192294377 gTAATAATATATg----gttacatagctc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163374204 25 + 180432695 GTAATAATATATG----GTTACATAGCTC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110406645 25 + 127223203 ACAATAATATATG----GTTACATAGCTC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23753087 25 - 128169293 gTAAGATTATATg----gttacacagctc
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52073326 29 -  59632846 GTGATATCATATGGTCAGTCACGTACCTG
i canFam3.chr16            I 205 C 0
e mm10.chr6                 40400518 465 + 149736546 I

a score=397130.000000
s hg38.chr7_GL383534v2_alt     22821 119 +    119183 AGAAAATAGGAACCTGACTTTGAATCCAGGCCATTTGATTTACAGAGCC---ACCGATAGCAATGTA-CTCTATACCGGTTCTAAATACATACTGTAACTCCCCAAGAGGTTAAAAATGAAAT
s panTro4.chr7             143123067 119 + 161824586 AGAAAATAGGAACCTGACTTTGAATCCAGGCCATTTGATTTACAGAGCC---ACCAATAGCAATGTA-CTCTATACCGGTTCTAAATACATACTGTAACTCCCCAAGAGGTTAAAAATGAAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138927238 119 + 157549271 agaaaataggaacctggctttgaatccaggccacttgatttacagagcc---ACCGATAGCAATGTA-CTCTATACCGGTTCTAAATACATACTGTAACTTCCCAAGAGGTTAAAAATGAAAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93064500 119 + 110113093 AGAAAATAGGAACCTGGCTTTGAATCCAGGCCATTTGATTTAGAGAGCC---GCCGATAGCAATGTA-CTCTATACCGGTTCTAAATACATACTGTAACTCCCCAAGAGGTTAAAAATGAAAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180962961 119 + 198365852 agaaaataggaacctggctttgaatccaggccatttgatttacagagcc---agtgATAGCAATGTA-CCCTACACTGGTTCTAAATACATACTCTAACTCCCCAAAAGGTTAAAAATGAAAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174708766 119 + 192294377 agaaaataggaacctggctttgaatccaggccatttgatttacagagcc---agtgatagcaatgta-ccctatactgGTTCTAAATACATACTCTAACTCCCCAAAAGGTTAAAAATGAAAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163374229 119 + 180432695 AGAAAATAGGAACCTGGCTTTGAATCCAGGCCATTTGATTTACAGAGCC---AGTGACAGCAATGTA-CCCTATACTGGTTCTAAATACATACTCTAACTCCCCAAaaggttaaaaatgaaat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110406670 119 + 127223203 AGAAAACAGGAACCTGGCTTTGAATCCAGGCCATTTGATTTACAGAGCC---AGTGATAGCAATGTA-CCCTATACTGGTTCTAAATACATACTCTAACTCCCCAAAAGGTTAAGAATGAAAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23753112 119 - 128169293 agaaagtaggaacccggctttgattccaggccatttgatttatagagcc---GCTGCCAGCAATGTA-CTCTCTACCAGTTCTAAATAAATACTGCAACTCCCCAAAAGGTTAAAAATGAAAT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40400983  71 + 149736546 AGAAAACAGAAACCTAGCTTTGCAACCAG-------------------------TGTTAACAACTCA-CTTTATACTGGTTTAAAAT---------AACTCTCC-----------------CT
i mm10.chr6                I 465 C 0
s canFam3.chr16             52073355  99 -  59632846 GGAAAGGAGGAACCTGGATTTGAACACA---------------AGAGCCCATGACGGTAGGAATTTACCCCTGTACTGCCTTAAAAG---------AACTCCCCAAAAAGTTAAAAATGAAAT
i canFam3.chr16            C 0 C 0

a score=238385.000000
s hg38.chr7_GL383534v2_alt     22940 114 +    119183 AAAAGTTTAGAATA-----TACACATATACC--AAATATATAT-CAAGTACATAAAGTTTTAAACTGAACTTTGATAAGAGAGTTTGTAAAGTAAAAGGGTGGTGGTCTCTGT-GGGATTCTA
s panTro4.chr7             143123186 114 + 161824586 AAAAGTTTAGAATA-----TACACATATACC--AAATATATAC-CAAGTACATAAAGTTTTAAACTGAACTTTGATAAGAGAGTTTGTAAAGTAAAAGGGTGGTGGTCTCTGT-GGGATTCTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138927357 114 + 157549271 AAAAGTTTAGAATA-----TACACATACACC--AAATATATAC-CAAATACATAAAGTTTTAAACTGAACTTTGATAAGAGAGTTTGTAAAGTAAAAGGGTGGTGGTCTCTGT-GGGATTCTA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93064619 112 + 110113093 AAAAGTTTAGAATA-----TACACACACACC--AAATATATAC-CAAATACAT--AGTTTTAAACTGAACTTTGATAAGAGAGTTTGTAAAGTAAAAGGGTGGTGGTCTCTGT-GGGATTCTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180963080 115 + 198365852 AAAAGTTTAGAATA-----TACACATACACC--AAATATATATATATACACATACAATTTTAAACTTAACTTTGATAAGAGAGTATGTAAAGTAAAAGGGTGGTGGTCTCTGT-GGGATTCCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174708885 115 + 192294377 AAAAGTTTAGAATa-----tacacatacacc--aaatatatatatatacacatacaATTTTAAACTTAACTTTGATAAGAGAGTATGTAAAGTAAAAGGGTGGTGGTCTCTGT-GGGATTCCA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163374348 111 + 180432695 aaaagtttagaata-----tacacatac------tatatatatacacacacatacaattttaAACTGAACTCTGATAAGAGAGTTTGTAAAGTAAAAGGGTGGTGGTCTCTGT-GGGATTCCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110406789 113 + 127223203 AAAAGTTTAGAATC-----TACacatacaccaaatatatatatatacacacatacaATTTTAAACTGAACTTTGATAAGAGAGTTTGTA----AAAAGGGTGGTGGTCTCTGT-GGGATTCCA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23753231  58 - 128169293 AAAAGTTTAGAATAAAAGTTACACATATACC--AAA--------TAAATACATACAGTTTTAAACTGG-------------------------------------------------------
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40401054  84 + 149736546 ATAGATATACAATG-----TGCATATTTATC---AATATATAA------------------------TGCTCTGATAAGAGA-TTTCTGAAATAAAA------TATCCTCTTTCTTAAGTCTA
i mm10.chr6                C 0 C 0
e canFam3.chr16             52073454   0 -  59632846 C

a score=12073168.000000
s hg38.chr7_GL383534v2_alt     23054 3371 +    119183 GAAGTTTCCTGATGTAATTAAGGGTACACAGCCCTGGCTCTTCTGGGTGGCGCAGTTATTCCCAACTTTGTTTCCCATTACCTGGAGAAAGTTTGTCCA----GACCGTGGCTTCTAGAAGGACAGGTAGCAG-CTCCCCAATCTCCTCCATCATCACTGTAAGTGAAGTCAGGTTCAGCCCCCACAGGCTCTGCTCATGGAGTAGGCCAC---CAT-TCCTTCCTACCACAAACCACATTTCTCGGACTGGAGAAGGG--ATTGCAGCACGCACGTTCATGTTAAAATGTGAACTTTAATTGTAAAAATCATTTTCTGTAAATATAGTTA-TATCAACCTCTCTGCACACAACTTGGTTCAGATATATACAGATATGATATTCATAGATGTT-ATTTGTACCACAGAACAAAATCAATTCAAGAAACATTTACTTTTAGCTTCAGGATTAACCCCAGCTTTCTTTAGGCC-TTAAAATTAC-CACCACTGGAAACAGAGAGAGAGCACGGCATACCTGGGCACACCAGTATTCAGGGCAAAATCTATGCAGTGTC----TTACTAATTTCATACTATGAGGTAAAGACCCGAAAC-AAAAATAGATTCAGTCTCTCGTATTGCTATAACTCTTAGGCTGGGG-TATTAATCAAAATAGGATTTTTACATTTAAGGCGACA-GGGAGGCTATGCTGATTCTAACTCAGAAAGAAAT--GGGAAAACAGTTTTTCTAAGGCTAC-AACTATTTGTTT----------AGGCTTATTTTCCCGGACCTAT-------ACAAAAATTCAGTCAACAAGTTTTGGGTAAATAAAGGAAATTCATTTTGCTTTCCTCTG--CTCTGTCCCTGAAGTCACTCATCCAGGTTGGCTGCTCAAACACCAAGAATCTCCACCATTCTTCACT-----TGACAGTCTTTGTGGACACGTTAGACCCAAA---CTTTTTTTTGTATAACAC-----CATCTTAAAATTTTTTAGTATACTTTATCTTTCTTTAGTTTACCCAAAGGAAGGAGTTTTCACTCTAATGTCA-----ATATATTTGCAACCATCCAACTCAAAGACCTCTGTGTCGACTGTTCACTTTGTGGAT-CATCTCTGGCTCATTTAAAACATCCTGCCTCATCCCCACATTCGCTGACTGGCCTTAGAAAGCAAAGTAAATTTATTGTTAGTCTAAATAAGCATTCTATAGCAAACATAAGTAATTCACACCTGGCCTACTATGA-------AAATTAAATTTTCTGAATTTAGATCATATTAGCTCTAAAAGCCCCACAGTATGCTAAAAATCGAAAATAAATTCTAAAAAGAGGAAAGCAAGGCTTT-TGTCTC--CATCATCATTTC-TTTATATAGCACT-AG-AAAATTCTTATTCCCCTTCTAAATTTGCAATTTCATCCAACTGCCCCTAAATTCTAGTTCCAAAAACAAATTAAAGTGCCA-GTTATAACACTACC-TCCCACTCCCACCTCTCTC-----AAGAAAGAGGCCT---AAAAATAAGAATGATGACATTTACCCTTTTTTGTACTAGAGCTTTACTGAAGGTTGGTATTTTTATGTCAACCTTCCTAGGACTGTCA-AGTCTGCCTCCTAAAGAGCGCTGTCAGGATTTCATAGCACAATCTCCTTATTCACTCTCCAAATTATT----TACATAGTAAAACTTCTATGGGGTCTCAGCCACCACCAAATTACAAAA-CTGCCCATTTCTTCTAGAATAATAGTTTTAAAATTTCCTTCCA---TTTCAGTATATGCATACTCAGTTCATCACATAGTAATATCAATAAAAAAATAAACTTCCATTTCTTATAAGAAAAACATTAACTTAATTCACAGTTAGCCTTTTCCCACAACACTCAATACTCCAGTAGCTTCTAGGAAGAGAGGTATATTAGTGATAAAAATGGAATATT-AAAAATCCATGACTTGGGAGTAAACGGAGCCCTTAACTCCTCCTCTCCCCCTACCTGAATCACAAAAGGGTTTTCCTGAAATGAGAGGGGATGGGACTGGGGTCAGCAGGATTCTCACCTC--GGTCTAA-------CTACAAGGTAC-GGGGAGAAGACAGGAGGGCTGGCCATTTGGCAGAATCCAAGCCTACTAGCTTGGGATCTACTAGGGAGATAAAAGCCCATGCCTGGCATATTGGTCCCCATTCTAATTGTCTTGCCCATGTTAGACCTGTCATCACACTAAGGCAAGTCCACTGCCAAGCTGAGCATTATCCTA---TTTTATTCATCCACCTGCCC----CTCCTCCTTTACCTCTGCAAGGTTGACCTATACAGGGTC-TGGAGAAAGCATCTCAATCCATTCCCTGGGCTATACAGTTTCGAA--------GGGAAATAAATGGTCCCTCGGGTTTCTGCCTTTTCTCGGAGGGTTGATGTCCTAAAACTGAAAGCCTAATTCATTACTGTCCTTTACAAAAGCTTCCCTGAAGGCCTCAGTTTAAAGATGAGT-GATTTCATCTTT-TACTGTGTTTGAAGGGCTTTCAGTGCATCAAGACTGAGAGCAAATTCATCCTCATAGCCACCAGAAGGAAA--AACAA-TGATTTAGCTAAGATTTAATTTATCT------------TCTAGCTAAAGTGTCATCGGTAGTCACATG-ATCAACAAATGTTCACATGTGGCATCTGGAAGCATGTGCACCTGTGTGCTAT-CTTAACTTTCTTGTCTTGACTTTAAAGTGGAACAAAACAAGGTAAGTTATAGATGCAAGTTCCTAAGCTAAATTACTTCTATTGATACATCAATGATTTCAGCTTCCCTCCCCCTAACCAGGTGGAAGCACAGATGCTATAATGGATGATGGATATGGAAGGCAAAAGCCTTCTAATTCATTGCAATCATAATTTACTGAGGACTGTACA-GGTCCCAGGTGGGACACTGACACTGGAATGG-TCTCTACCAGGCATAGGGAATGGTTCGTGT----TTAAAGGCCAAGCAAATTCTAAACAC-ATAATTTGGGCCATAC-TTTTAG-TCTGGTAGGGGATAAGCCCTACCATTTCAA---ACTCCTTGTG----GAGAGTCCTAAGCCAGGGGCCAACTGGACATTTTCCCAAAGGCTGGGCAGTATCATCTGCTGAGCCTACAGAATTG------AAAATGCCCTCTTGAACAGGCCTT--------------TGTCATATTTTGCATGGATACCAACGAGCCCCAAA----------------CCTGAATTC--------------------CACTCCCACCTGGAACTTCTTC--TGACTT-ATTCAGGAACAACAGGGCAGCCCAGCCAGCATCTCAGGTCAGCAATCATTTCCAAACTGGCACATAGTTCATTTCACAGTGTGGCATGAGATCAGGCTGACAGCTTCACAGGAGAACTAGGCCTGCTCAGGCAGGCGA-GGGCTGAGGCCCGGCAGGAGATGGTGGCAGAAGGTGTCACACCACAGGTATCCAACCCTCCTCCAGGAGGCCGGTGGTCATCATAATGCCCGCCCCT
s panTro4.chr7             143123300 3371 + 161824586 GAAGTTTCCTGATGTAATTAAGGGTACACAGCCCTGGCTCTTCTGGATGGCGCAGTTATTCCCAACTTTGTTTCCCATTACCTGGAGAAAGTTTGTCCA----GACCGTGGCTTCTAGAAGGACAGGTAGCAG-CTCCCCAATCTCCTCCATCATCACTGTAAGTGAAGTCAGGTTCAGCCCCCACAGGCTCTGCTCATGGAGTAGGCCAC---CAT-TCCTTCCTACCACAAACCACATTTCTCGGACTGGAGAAGGG--ATTGCAGCACGCATGTTCATGTTAAAATGTGAACTTTAATTGTAAAAATCATTTTCTGTAAATATAGTTA-TATCAACCTCTCTGCACACAACTTGGTTCAGATATATACAGATATGATATTCATAGATGTT-ATTTGTACCATAGAACAAAATCAATTCAAGAAACATTTACTTTTAGCTTCAGGATTAACCCCAGCTTTCTTTAGGCC-TTAAAATTAC-CACCACTGGAAACAGAGAGAGAGCATGGCATACCTGGGCACACCAGTATTCAGGGCAAAATCTATGAAGTGTC----TTACTAATTTCATAATATGAGGTAAAGACCCGAAAC-AAAAATAGATTCAGTCTCTCGTATTGCTATAACTCTTAGGCTGGGG-TATTAATCAAAATAGGATTTTTACATTTAAGGCGACA-GGGAGGCTATGCTGATTCTAACTCAGAAAGAAAT--GGGAAAACAGTTTTTCTAAGGCTAC-AACTATTTGTTT----------AGGCTTATTTTCCCGGACCTAT-------ACAAAAATTCAGTCAACAAGTTTTGGGTAAATAAAGGAAATTCATTTTGCTTTCCTCTG--CTCTGTCCCTGAAGTCACTCATCCAGGTTGGCTGCTCAAACACCAAGAATCTCCACCATTCTTCACT-----TGACAGTCTTTGTGGACACGTTAGACCCAAA---CTTTTTTTTGTATAACAC-----CATCTTAAAATTTTTTAGTATACTTTATCTTTCTTTAGTTTACCCAAAGGAAGGAGTTTTCACTCTAATGTCA-----ATATATTTGCAACCATCCAACTCAAAGACCTCTGTGTCGACTGTTCACTTTGTGGAT-CATCTCTGGCTCATTTAAAACATCCTGCCTCATCCCCACATTCGCTGACTGGCCTTAGAAAGCAAAGTAAATTTATTGTTAGTCTAAATAAGCATTCTATAGCAAACATAAGTAATTCACACCTGGCCTACTATGA-------AAATTAAATTTTCTGAATTTAGATCATATTAGCTCTAAAAGCCCCACAGTATGCTAAAAATCGAAAATAAATTCTAAAAAGAGGAAAGCAAGGCTTT-TGTCTC--CATCATCATTTC-TTTATATAGCACT-AG-AAAATTCTTATTCCCCTTCTAAATTTGCAATTTCATCCAACTGCCCCTAAATTCTAGTTCCAAAAACAAATTAAAGTGCCA-GTTATAACACTACC-TCCCACTCCCACCTCTCTC-----AAGAAAGAGGCCT---AAAAATAAGAATGATGACATTTACCCTTTTTTGTACTAGAGCTTTACTGAAGGTTGGTATTTTTATGTCAACCTTCCTAGGACTGTCA-AGTCTGCCTCCTAAAGAGCGCTGTCAGGATTTCATAGCACAATCTCCTTATTCACTCTCCAAATTATT----TACATAGTAAAACTTCTATGGGGTCTCAGCCACCACCAAATTACAAAA-CTGCCCATTTCTTCTAGAATAATAGTTTTAAAATTTCCTTCCA---TTTCAGTATATGCATACTCAGTTCATCACATAGTAATATCAATAAAAAAATAAACTTCCATTTCTTATAAGAAAAACATTAACTTAATTCACAGTTAGCCTTTTCCCACAACACTCAATACTCCAGTAGCTTCTAGGAAGAGAGGTATATTAGTAATAAAAATGGAATATT-AAAAATCCATGACTTGGGAGTAAACGGAGCCCTTAACTCCTCCTCTCCCCCTACCTGAATCACAAAAGGGTTTTCCTGAAATGAGAGGGGATGGGACTGGGGTCAGCAGGATTCTCACCTC--GGTCTAA-------CTACAAGGTAC-GGGGAGAAGACAGGAGGGCTGGCCATTTGGCAGAATCCAAGCCTACTAGCTTGGGATCTACTAGGGAGATAAAAGCCCATGCCTGGCATATTGGTCCCCATTCTAATTGTCTTGCCCATGTTAGACCTGTCATCACACTAAGGCAAGTCCACTGCCAAGCTGAGCATTATCCTA---TTTTATTCATCCACCTGCCC----CTCCTCCTTTACCTCTGCAAGGTTGACCTATACAGGGTC-TGGAGAAAGCATCTCAATCCATTCCCTGGGCTATGCAGTTGCAAA--------GGGAAATAAATGGTCCCTCGGGTCTCTGCCTCTTCTCGGAGGGTTGATGTCCTAAAACTGAAAGCCTAATTCATTACTGTCCTTTACAAAAGCTTCCCTGAAGGCCTCAGTTTAAAGATGAGT-GATTTCATCTTT-TACTGTGTTTGAAGGGCTTTCAGTGCATCAAGACTGAGAGCAAATTCATCCTCATAGCCACCAGAAGGAAA--AACAA-TGATTTAGCTAAGATTTAATTTATCT------------TCTAGCTAAAGTGTCATCGGTAGTCACATG-ATCAACAAATGTTCACATGTGGCATCTGGAAGCATGTGCACCTGTGTGCTAT-CTTAACTTTCTTCTCTTGACTTTAAAGTGGAACAAAACAAGGTAAGTTATAGATGCAAGTTCCTAAGCTAAATTACTTCTATTGATACATCAATGATTTCAGCTTCCCTCCCCCTAACCAGATGGAAGCACAGATGCTATAATGGATGATGGATATGGAAGGCAAAAGCCTTCTAATTCATTGCAATCATAATTTACTGAGGACTGTACA-GGTCCAAGGTGGGACACTGACACTGGAATGG-TCTCTACCAGGCATAGGGAATGGTTCATGT----TTAAAGGCCAAGCAAATTCTAAACAC-ATAATTTGGGCCATAC-TTTTAG-TCTGGTAGGGGATAAGCCCTACCATTTCAA---ACTCCTTGTG----GAGAGTCCTAAGCCAGGGGCCAACTGGACATTTTCCCAAAGGCTGGGTAGTATCATCTGCTGAGCCTACAGAATTG------AAAATACCCTCTTGAACAGGCCTT--------------TGTCATATTTTACATGGATACCAACGAGCCCCAAA----------------CCTGAATTC--------------------TACTCCCACCTGGAATTTCTTC--TGACTT-ATTCAGGAACAATAGGGCAGCCCAGCCAGCATCTCAGGTCAGCAATTATTTCCAAACTGGCACATAGTTCATTTCACAGTGTGGCATGAGATCAGGCTGACAGCTTCACAGGAGAACTAGGCCTGCTCAGGCAGGCGA-GGGCTGAGGCCCGGCAGGAGATGGTGGCAGAAGGTGTCACATCACAGGTATCCAACCCTCCTCCAGGAGGCCAGTGGTCATCATAATGCCCGCCCCT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138927471 3357 + 157549271 GAAG-TTCCTGATGTGGTTAAGGGTACACAGCCCTGGCTCTTCTGGGTGGCGCAGTTATTCCCAACTTTGTTTCCCATTACCTGGAGAAAGTCTGTCCA----GACCGTGGCTTCTAGAAGGACAGGTAGCAG-CTCCCCAATCTCCTCCATCATCACTGTAAGTGAAGTCGGGTTCAGCCCCCACAGGCTCTGCTCATGGAGTGGGCCAC---CAT-TCCTTCCTACCACAAACCACATTTCTCGGACTGGAGAAGGG--ATTGCAGCACGCATGTTCATGTTAAAATGTGAACTTTAATTGTAAAAATCATTTTCTGTAAATATAGTTA-TATCAACCTCTCTGCACACAACTTGGTTCAGATATATACAGATATGATATTCATAGATGTT-ATTTATACCACAGAACAAAATCAATTCAAGAAACATTTACTCTTAGCTTTAGGATTAACCCCAGCTTTCTTTAGGCC-TTAAAATTAC-CACCACTGGAAAGAGAGAGAGAGCACGGCATACCTGGGCACACCAGTATTCAGGGCAAAATTTATGAAGTGTC----TTACTAATTTCATAATATGAGGTAAAGACCCACAAC-AAAAATAGATTCAGTCTCTTGTATTGCTATAACTCTTAGGCTGGGT-TATTAATCAAAATAGGATTTTTACATTTAAGGCGACA-GGGAGGCTATGCTGATTCTAACTCAGAAAGAAAT--GGGAAAACAGTTTTTCTAAGGCTAC-AACTATTTGTTT----------AGGCTTATTTTCACAGACCTAT-------ACAAAAATTCAGTCAACAAGCTTTGGGTAAATAAAGCAAATTCATTTTGCTTTCCTCTG--CTCTGTCCCTGAAGTCACTCATCCAGGTTGGCTGCTCAAACACCAAGAATCTCCACCATTCTTCACT-----TGACAGTCTTTGTGGACACGTTAGACCCAAA---CTTTTTTTTGTATAACAC-----CATCTTAAAATTTTTTAGTATACTTTATCTTTCTTTAGTTTACCCAAAGGAAGGAGTTTTCACTCTAATGTCA-----ATATATTTGCAACCATCCAACTCAATGACCTCTGTGTGGACTGTTCACTTTGTGGAT-CATCTCTGGCTCACTTAAAACATCCTGCCTCATCCCCACATTCGCTGACTGGCCTTAGAAAGCAAAGTAAATTTATTATTAGTCTAAATAAGCATTCTATAGCAAACGTAAGTAATTCACACCTGGCCTACTATGA-------AAATTAAATTTTCTGAATTTAGATCATATTAGCTCTAAAAGCCCCACAGTATGCTAAAAATCAAAAATAAATTCTAAAAAGAGGAAAGCAAGGCTTT-TGTCTC--CATCATCATTTC-TTTATATAGCACT-AG-AAAATTCTTATTCCCCTTCTAAATTTGCAATTTCATCCAACTGCCCCTAACTTCTAGTTCCAAAAACAAATTAAAGTGCCA-GTTATAACACTACC-TCCCACTCCCACCTCTCTC-----AAGAAAGAGGCCT---AAAAATAAGAATGATGACATTTACCCTTTTTTGTACTAGAGCTTTACTGAAGGTTGGTATTTTTATGTCAACCTTCCTAGGACTGTCA-AGTCTGCCTCCTAAAGAGCGCTGTCAGGATTTCATAGCACAATCTCCTTATTCACTCTCCAAATTATT----TACATAGTAAAACTTCTATGGGGTCTCAGCCACCACCAAATTACAAAA-CTGCCCATTTTTTCTAGAATAATAGTTTTAAAATTTCCTTCCA---TTTCAGTATATGCATACTCAGTTCATCACATAATAATATCAATAAAAAAATAAACTTCCATTTCTTATAAGAAAAACATTAACTTAATTCACAGTTAGCCTTTTCCCACAACACTCAATACTCCAGTAACTTCTAGGAAGAGAGGTATATTAGTAATAAAAATGGAATATT-AAAAATCCATGACTTGGGAGTAAACGGAGCCCTTAACTCCTCCTCTCCCGCTACCTGAATCACAAAAGGGTTTTCCTGAAATGAGAGGGCACGGGACTGGGGTCAGCAGGATTCTCACCTC--GGTCTAA-------CTACAAGGTTC-GGGGAGAAGACAGGAGGGCTGGCCATTTGGCAGAATCCAAGCCTACTAGCTTGGGATCTATTAGGGAGATAAAAGCCCATGCCTGGCATGTTGGTCCCCATTCTAATTGTCTTGCCCATGTTAGACCTGTCATCACACTAAGGCAAGTTCACTGCCAAGCTGAGCATGATCC--------TATTCATCCACCTGCCC----CTCCTCCTTTACCTCTGCAAGGATGGCCTATACAGGGAC-TGGAGAAAGCATCTTAATCCATTCCCTGGGCTATGCAGTTGCAAA--------GGGAAATAAATGGTCCCTCGGGTCTCTGCCTCTTCTCGGAGGATTGATGTCCTAAAACTGAAAGCCTAATTCATTACTGTCCTTTACAAAAGCTTCCCTGAAGGCCTCAGTTTAAAGGTGAGT-GATTTCATCTTT-TATTGCATTTGAAGGGCTTTCAGTGCATCAAGACTGAGAGCAAATTCATCCTCATAGCCACCAGAACGAAA--AACAA-TGATTTAGCTAAGATTTAATTTATCT------------TGTAGCTAAAGTATCATCGGTAGTCACAGG-ATCAACAAATGTTCACATGTGGCATCTGGAAGCATGTGCACCTGTGTGCTAT-CTTAACTTTCTTGTCTTGACTTTAAAGTGGAATAAAAC-----AAGTTATAGATGCAAGTTCCTATGCTAAATTACTTCTATTGATACATCAATGATTTCAGCTTCCCTCCCCCTAACCAGATGGAAGCACAGATGCTATAATGGATAATGGATATGGAAGGCAAAAGCCTTCTAATTCATTGCAATCATAATTTACTGAGGACTGTACA-GGTCCCAGGTGGGACACTGACACTGGAATGG-TCTCTACAAGGCATAGGGAATGTTTCATGT----TTAAAGGCCAAGCAAATTCTAAACAC-ATAATTTGGGCCATAC-TTTTAG-TCTGGTAGGGGATAAGCCCTA-CATTTCAA---ACTCCTTGTG----GAGAGTCCTAAGCCAGGGGCCAACTGGACATTTTCCCAAAGGCTGGGTAGTATCATCTGCTGAGCCTACAGAATTG------AAAACACCCTCTTGAACAGGCCTT--------------TGTCATATTTTACATGGATACCAACGAGCCCCAAA----------------CCTGAATTC--------------------TACTCCCACCTGGAATTTCTTC--TGACTT-ATTCAGGAACAAGAGGGCAGCCCAGCCAGCATCTCAGGTCAGCAATTATTTCCAAACTGGCACACAGTTCATTT--CAGTGTGGCATGAGATCAGGCTGACAGCTTCAGTGGAGAACTAGGCCTGCTCAGGCAGGCGA-GGGCTGAGGCCTGGCAGGAGATGGTGGCAGAAGGTATCACACCACAGGTTTCCAGCCCTCCTCCAGGAGGCCAAAGGTAATCATAATCCCCGCCCCT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93064731 3337 + 110113093 GAAGTTTCCTGATATAATTAAGGGTACACAGCCCTGGCTCTTCTGGGTGGCACAGTTATTCCCAACTTTGTTTCCCATTACCTGGAGAAAGTTTGTCCA----GACCGTGGCTTCTAGAAGGACAGGTAGCAG-CTCCCCAGTCTCCTCCAT---------------------------------CAGGCTCTGCTCATGGGGTGGGTCAC---CAT-TCCTTTCTACCACAAACCACATTTCTTGGACTGGAGAAGGT--ATTGCAGCACGCTTGTTCATGTTAAAATGTGAACTTTAATTGTAAAAATCATTTTCTGTAAATATAGTTA-TATCAACCTCTCTGCACACAACTTGGTTCAGATATATACAGATATGATATTCAAAGATGTT-ATTTGTACCACAGAACAAAATCAATTCAAGAAACATTTACTCTTAGCTTCAGGATTAACCCCAGCTTTCTTTAGGCC-TTAAAATTAC-CACCACTGGAAACAGAGAGAGAGCACGGCATACCTAGGCACACCAGTATTCAGGGCAAAATTTATGAAGTGTC----TTACTAGTTTCATAATATGAGGTAAAGACCCAAAAC-AAAAATAGATTCAGTCTCTCGTATTGCTATAACTCTTAGGCTGGGG-TATTAATCAAAATAGGATTTTTACATTTAAGGCGACA-GGGAGGCTATGCTGATTCTAACTCAGAAAGAAAT--GGGAAAACAGTTTTTCTAAGGCTAC-AACTATTTGTTT----------AGGCTTATTTTCCCGGACCTAT-------ACAAAAATTCAGTCAACAAGCTTTGGGTAAATAAAGAAAATTCATTTTGCTTTCCTCTG--CTCTGTCCCTGAAGTCACTCATCCAGGTTGGCTGCTCAAACGCCAAGAATCTCCACCATTCTTCACT-----TGACAGTCTTCGTGGACAAGTTAGAACCAAA---CTTTTTTTTGTATAACAC-----CATCTTAAAATTTTTTAGTATACTTTATC-TTCTTTAGTTTACCCAAAGGAAGGAGTTTTCACTCTAATGTCA-----ATATATTTGCAACCATCCAATtcaatgacctctgtgtggactattcactttgtggat-catctctggctaatttaaaacctcctgccTCATCCCCACATTCGCTGACTAGCCTTAGAAAGCAAAGTAAATTTATTATTAGTCTAAATAAGCATTCTACAGCAAACATAAGTAATTCACACCTGGCCTACTATGA-------AAATTAAATTTTCTGAATTTAGATCATATTAGCTCTAAAGGCCCCACAGTATGCTAAAAGTCGAAAATAAATTCTAAAAAGAGGAAAGCAAGGCTTT-TTTCTC--CATCATCATTTC-TTTATATAGCAAT-AG-AAAATTCTTATTCCCCTTCTAAATTTGCAATTTCATCCAACTGCCCCTAAATTCTAGTTCCAAAAACAAATTAAAGTGCCA-GTTATAACACTACC-TCCCACTCCCACCTCTCTC-----AAGAAAGAGGCCT---AAAAATAAGAATGATGACATTTACCCTTTTTTGTACTAGAGCTTTACTGAAGGTTGGTATTTTTATGTCAACCTTCCTAGGACTGTCA-AGACTGCCTCCTAAAGAATGCTGTCAAGATTTCATAGCACAGTCTCCTTATTCACTCTCCAAATTATT----TACATAGTAAAACTTCTATGGGGTCTCAGCCACCACCAAATTACAAAA-CTGCCCATTTCTTCTAGAATAATAGTTTTAAAATTTCCTTCCA---TTTCAGTATCTGCATACTCAGTTCATCACATAGTAATATCAATAAAAAAATAAACTTCCATTTCTTATAAGAAAAACATTAACTTAATTCACAGTTAGCCTTTTCCCACAACACTCAATACTCCAGTAGCTTCTAGGAAGAGAGGTATATTAGTAATAAAAATGGAATATT-AAAAATTCATGACTTGGGAGTAAATGGAGCCCTTAACTCCTCCTCTCCCCCTACCTGAATCACAAAAGGGTTTTCCTGAAATGAGAGGGGACGGGACTGGGGTCAGCAGGATTCTCACCTT--GGTCTAA-------CTACAAGGTAC-GGGGAGAAGACAGGAGGGCTGGCCATTTGGCAGAATCCAAGCCTACTAGCTTGGGATCTATTAGGGAGATAAAAGCCCATGCCTGGCATATTGGTCCCCATTCTAATTGTCTTGCCCATGTTAGACCTGTCATCACACTAAGGCAAGTTCACTGCCAAGCTGAGCATTATCCTA---TTTTATTCATCCACCTGCCC----CTCCTCCTTTACCTCTGCAAGGATGACCTATACAGGGAC-TGGAGAAAGCATCTCAATCCATTCCCTGGGCTATGCAGTTTCAAA--------GGGAAATAAATGGTCCCTCGGGTCTCTGCCTCTTCTTGGAGGGTTGATGTCTTACAACTGAAAGCCTAATTCATTACTGTCCTTTACAAAAGCTTCCCTGAAGGCCTCAGTTTAAAGGTGAGT-GATTTCATCTTT-TATTGTGTTTGAAGGGCTTTCAGTGTATCAAGACTGAGAGCAAATTCATCCTCATAGCCACCAGAACGAAA--AACAA-TGATTTAGCTAAGATTTAATTTATCT------------TCTAGCTAAAGTATCATCGGTAGTCATATG-ATCAACAAATGTTTACATGTGGCATCTGGAAGCATGTGCACCTGTGTGCTAT-CTTAACTTTCTTGTCTTGACTTCAAAGTGGAACAAAACAAGGTAAGTTATAGATGCAAGTTCCTATGCTATATTACTTCTATTGATACATCAATGATTTCAGCTTCCCTCCCCCTAACCAGACGGAAGCACAGATGCTATAATGGATGATGGATATGGAAGGCAAAAGCCTTCTAATTCATTGCAATCATAATATACTGAGGACTGTACA-GGTCCCAGGTGGGACACTGACACTGGAATGG-TCTCTACCAGGCATAAGGAATGTTTCATGT----TTAAAGGCCAAGCAAATTATAAACACTTTAATTTGGGCCATAC-TTTTAG-TCTGGTAGGGGATAAGCCCTACCATTTCAA---ACTCCTTGTG----GAGAGTCCTAAGCC-GGGGCCAACTGGACATTTTCCCAAAGGCTGGGTAGTATCATCTGCTGAGCCTACAGAATTG------AAAACACCCTCTTGAACAGGCCTT--------------TGTCATATTTTACATGGATACCAATGAGCCCCAAA----------------CCTGAATTC--------------------TACTCCCACCTGGAATTTCTTC--TGACTT-ATTCATGAACAACAGGGCGGCCCAGCCAGCATCTCAGGTCAGCAATTATTTCCAAACTGGCACATGGTTCATTTCACAGTGTGGCATGAGATCAGGCTGAAAGCTTCACAAGAGAACTAGGCCTGCTCAGGCAGGCGA-GGGCTGAGGCCCGGCAGGAGATAGTGGCAGAAGGTGTCACGCCACAGGTTTCTAACCCTCCTCCAGGAGGCCAATGGTAATCATAATGCCCGCCCCT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180963195 3362 + 198365852 GAAGTTTCCTGATGTAATTAAGGGTACACAGCCCTGTCTCTTCTGGGTGGCATAGTCATTCCCAACTTTGTTTCCCATTACCTGGAGAAAGTCTGTCCA----GACCGTGGCTTCCAGAAGGACAGGTAGCAG-CTCCCCAATCTCCTCCATCGTCACTGTAAGTGAAGTCAGGTTCAGCCCCCATGGGCTCTGCTCATGGGGTGGGCCAC---CAT-TCCTTCCTACCACAAACCACTTTTCTCGGACTGGAGAAGGG--ACTGCAGCACACGTGTTCATGTTAAAATGTGAACTTTAATTGTAAAAATCATTTTCTGTAAATATAGTTA-TATCAACCTCTCTGCACGCAACTTGGTTCATATATATACAGATATGATATTCATAGATGTT-ATTTGTACCACAGAACAAAATCAATGCAAGAAACATTTACTCTTAGCTTCAGGATTAACCCCAGCTTTCTTTAGGCC-TTAAAATTAC-CACCACTGGAAAC----AGAGAGCACGGCATACCTGGGCACATCAGTGTTCAGGGCAAAATTTATGAAGTGTC----TTACTAATTTCATAATATGAGGTAAAGACCCGAAAC-AAAAATAGATTCAGTCTCTTGTATTGCTGTAACTCTTAGGCTGGGG-TATTAATCAAAATAGGATTTTTACATTTAAGGCGACA-GGCAGGCTATGCTGATTCTAACTCAGAAAGAAAT--GGGGAAACAGTTTTTCTAAGGGTAC-AACTATTTGTTT----------AGGCTTATTTTCCCAGACCTAT-------ACAAAAATTCAGTCAACAAACTTTGGGTAAATAAAGGAAATTCATTTTGCTTTCCTCTGCTCTCTGTCCCTGAAGTCACTCATCTAGGCTGGCTGCTCAAACGCCCAGAATCTCCACCATTCTTCACT-----TGACAGTCTTCATGCACACGTTAGACCCAAATTTTTTTTTTTTGTATAACAC-----CATCTTAACATTTTTCAATATACTGTATCTTTCTTTGGTTTACCCAAAGGAAGGAGTTTTCACTCTAATGTCA-----ATATATTTGCAACCATCCAActcagtgacctctgtgtggactgttcactttgtggat-catctctggctaattGAAAACATCCTGCCTCATCCCCACATTCTCTGACTAGCCTTAGACAGCAAAGTAAATTTATTATTAGTCTAAATAAGCATTCTATAGCAAACATACGTAATTCACACCTGGCCTGCTATGA-------AAATTAAATTTTCTGAATTTAGATCATATTAGCTCTAAAAGCCCCACAGTGTGCTAAAAATCAAGAATAAATTCTAAAAAGATGAAAGCAAGGCTTT-TTTCTC--------CATTTC-TTTATAGAGCACT-AG-AAAATTCTTATTCCCCTTCAAAATTTGCAATTTCATCCAACTGCCCCTAAATTCTAGTTCCAAAAACGAATTAAAGTGCCA-GTTATAACACTACC-TCCCACTCCCACCTCTCTC-----AAGAAAGAGGCCT---AAAAATAAGAATGATGACATTTACCCTTTTTTGTACTAGAGCTTTACTTAAGGTTGGTATTTTTATGTCAACCTTCCTAGGACTGTCA-AGTCTACTTCCTAAAGAGCA-TGTCAAGATTTCATAGCACAATCTCCTTATTCACTCTCCAAATTATT----TACAAAGTAAAACTTCTATGGGGTCTCAGCCACCACCAAATTACAAAA-CTGCCCATTTCTTCTAGAATAATAGTTTTAAAATTTCCTTCCA---TTTCAGTATATGCATACTCAGTTTATCACATAGTAATATCAATAAAAAAATAAACTTCCATTTCTTATAAGAAAAACATTAACTTAATTCACAGTTAGCCTTTTCCCACAACACTCAAGACTCCAGTAGCTTCTAGGAACAGAGGTATATTAGTAATAAAAATGGAATATT-AAAAATCCATGACTTGGGAGTAAACGGAGCCCTTAACTCCTCCTCTCCCCCTACCTGAATCAGAAAAGGGTTTTCCTGAAATGAGAGGGGACGGGACTGGGGTCAGCATGATTCTCACCTC--GGTATAA-------CTACAAGGTACAGGGGAGAAGACAGGAGGGATGGCCATTTGGCAGAATCCAAGCCTACTAGCTTGGGATCTATTAGGGAGATAAAAGCCTATGCCTGGCATATTGGTCCCCAATCTGATTTTCTTGCCCATGTTAGAACTGTCATCACACTAAGGCAAGTTCACTGCCAAGCTGAGCATTATCCTG----TTTATTCATCCACCTGCCC---ACTCCTCCTCTACCTCTGCAAGGATGACCTGTACAGGGAC-TGGAGAAAGCATCTCAATCCATTCCCCGGGCTGTGCAGTTTCAGA--------GGGAAATAAATGGTCCCTTGGGTCTCTGCCTCTTCTCGGAGGGTTGATGTCCTACAACTGAAAGCCTAATTCATTACTGCCCTTTACAAAAGCTTCCCTGAAGGCCTCAGTTTAAAGGTGAGT-GATTTCATCTTT-TATTGTGTTTGAAGGGCTTTCAATGTATCAAGACTGAGAGCAAATTCATCCTTATAGCCACCAGAATGAAA--AACAA-TGATTTAGCTAAGATTTAATTTATCT------------TCTAGCTAAAGTCTCATCGGTAGTTACATG-ATCAACAAATGTTCACATGTGGCATCTGGAAGCATGTGCACCTGTGTGCTAG-CTTAACTTTCTTGTCTTGACTTTAAAGTGGAACAAAACAAGGTAAGTTATAGATGCAAGTTCCTAAACTAAATTACTTCTATTGATACATCAATGATTTCAGCTTCCCTCCCCCTAATCAGATGGAGACACAGATGCTATAATGGATGATGGATATGGAAGACAAAAGCCTTCTAATTCATTGCAATCATAATTTACTGAGGACTGTAGA-GGTCCCAGGTGGGACACTGACACTGGAATTG-TCTCTACCAGGCATAGAGAATGTTTCGTGT----TTAAAGCCCAAGCAAATTCTAAACAC-ATAATTTGGGCCATAC-TTTTAT-TCTGGTAGGGGATAAGCCCTACCATTTGGA---ACTCCTTGTG----GAGAGTCCTAAGCCAGGAGCCAACTGGACATTTTCCCAAAGGCTGAGTAGTATCATCTGCTGAGCCCACAGAATTG------AAAACACCCCCTTGAACAGGCCTT--------------TGTCATATTTTACATGGACACCAACAAGCCCCAAA----------------CCTGAATTC--------------------TCCTCCCACCTGGAATTTCTTC--TGACTT-----AGGAACAACAGGGCAGCCCAGCCAGCGTCTCAGGTCAGCAATTATTTCTCAACTGGCACATGTTTCGTTTCACAGTGTGGCATGAGATCAGGCTGAAAGCTTCACAGGAGAACTAGGCCTGCTCAGGCAGGCCA-GGGCTGAGGCCCAGCAGGAGATAGTGGCAGAAGGTATCACACCACAAGTTTCCAACCCTCCTCCAGGAGGCCAGTGGTAATCATAATGCCCGCCCCT
i rheMac3.chr3             C 0 I 413
s macFas5.chr3             174709000 3355 + 192294377 GAAGTTTCCTGATGTAATTAAGGGTACACAGCCCTGTCTCTTCTGGGTGGCATAGTCATTCCCAACTTTGTTTCCCATTACCTGGAGAAAGTCTGTCCA----GACCGTGGCTTCCAGAAGGACAGGTAGCAG-CTCCCCAATCTCCTCCATCGTCACTGTAAGTGAAGTCAGGTTCAGCCCCCATGGGCTCTGCTCATGGGGTGGGCCAC---CAT-TCCTTCCTACCACAAACCACTTTTCTCGGACTGGAGAAGGG--ACTGCAGCACACGTGTTCATGTTAAAATGTGAACTTTAATTGTAAAAATCATTTTCTGTAAATATAGTTA-TATCAACCTCTCTGCACGCAACTTGGTTCATATATATACAGATATGATATTCATAGATGTT-ATTTGTACCACAGAACAAAATCAATGCAAGAAACATTTACTCTTAGCTTCAGGATTAACCCCAGCTTTCTTTAGGCC-TTAAAATTAC-CACCACTGGAAAC----AGAGAGCACGGCATACCTGGGCACATCAGTGTTCAGGGCAAAATTTATGAAGTGTC----TTACTAATTTCATAATATGAGGTAAAGACCCGAAAC-AAAAATAGATTCAGTCTCTTGTATGGCTGTAACTCTTAGGCTGGGG-TATTAATCAAAATAGGATTTTTACATTTAAGGCGACA-GGCAGGCTATGCTGATTCTAACTCAGAAAGAAAT--GGGGAAACAGTTTTTCTAAGGGTAC-AACTATTTGTTT----------AGGCTTATTTTCCCAGACCTAT-------ACAAAAATTCAGTCAACAAACTTTGGGTAAATAAAGGAAATTCATTTTGCTTTCCTCTGCTCTCTGTCCCTGAAGTCACTCATCTAGGCTGGCTGCTCAAACGCCCAGAATCTCCACCATTCTTCACT-----TGACAGTCTTCATGGACACGTTAGACCCAAA-TTTTTTTTTTTGTATAACAC-----CATCTTAAAATTTTTCAATATACTCTATCTTTCTTTGGTTTACCCAAAGGAAGGAGTTTTCACTCTAATGTCA-----ATATATTTGCAACCATCCAActcagtgacctctgtgtggactgttcactttgtggat-catctctggctaattGAAAACATCCTGCCTCATCCCCACATTCTCTGACTAGCCTTAGACAGCAAAGTAAATTTATTATTAGTCTAAATAAGCATTCTATAGCAAACATAAGTAATTCACACCTGGCCTGCTATGA-------AAATTAAATTTTCTGAATTTAGATCATATTAGCTCTAAAAGCCCCACAGTGTGCTAAAAATCAAGAATAAATTCTAAAAAGATGAAAGCAAGGCTTT-TTTCTC--------CATTTC-TTTATAGAGCACT-AG-AAAATTCTTATTCCCCTTCAAAATTTGCAATTTCATCCAACTGCCCCTAAATTCTAGTTCCAAAAACGAATTAAAGTGCCA-GTTATAACACTACC-TCCCACTCCCACCTCTCTC-----AAGAAAGAGGCCT---AAAAATAAGAATGATGACATTTACCCTTTTTTGTACTAGAGCTTTACTTAAGGTTGGTATTTTTATGTCAACCTTCCTAGGACTGTCA-AGTCTACCTCCTAAAGAGCA-TGTCAAGATTTCATAGCACAATCTCCTTATTCACTCTCCAAATTATT----TACAAAGTAAAACTTCTATGGGGTCTCAGCCACCACCAAATTACAAAA-CTGCCCATTTCTTCTAGAATAATAGTTTTAAAATTTCCTTCCA---TTTCAGTATATGCATACTCAGTTTATCACATAGTAATATCAATAAAAAAATAAACTTCCATTTCTTATAAGAAAAACATTAACTTAATTCACAGTTAGCCTTTTCCCACAACACTCAAGACTCCAGTAGCTTCTAGGAACAGAGGTATATTAGTAATAAAAATGGAATATT-AAAAATCCATGACTTGGGAGTAAACGGAGCCCTTAACTCCTCCTCTCCCCCTACCTGAATCAGAAAAGGGTTTTCCTGAAATGAGAGGGGACGGGACTGGGGTCAGCATGATTCTCACCTC--GGTATAA-------CTACAAGGTACAGGGGAGAAGACAGGAGGGATGGCCATTTGGCAGAATCCAAGCCTACTAGCTTGGGATCTATTAGGGAGATAAAAGCCTATGCCTGGCATATTGGTCCCCAATCTGATTTTCTTGCCCATGTTAGAACTGTCATCACACTAAGGCAAGTTCACTGCCAAGCTGAGCATTATCCTG----TTTATTCATCCACCTGCCC---ACTCCTCCTCTACCTCTGCAAGGATGACCTGTACAGGGAC-TGGAGAAAGCATCTCAATCCATTCCCCGGGCTGTGCAGTTTCAGA--------GGGAAATAAATGGTCCCTTGGGTCTCTGCCTCTTCTCGGAGGGTTGATGTCCTACAACTGAAAGCCTAATTCATTACTGCCCTTTACAAAAACTTCCCTGAAGGCCTCAGTTTAAAGGTGAGT-GATTTCATCTTT-TATTGTGTTTGAAGGGCTTTCAGTGTATCAAGACTGAGAGCAAATTCATCCTTATAGCCACCAGAATGAAA--AACAA-TGATTTAGCTAAGATTTAATTTATCT------------TCTAGCTAAAGTCTCATCGGTAGTTACATG-ATCAACAAATGTTCACATGTGGCATCTGGAAGCATGTGCACCTGTGTGCTAG-CTTAACT---TTGTCTTGACTTTAAAGTGGAACAAAACAAGGTAAGTTATAGATGCAAGTTCCTAAACTAAATTACTTCTATTGATACATCAATGATTTCAGCTTCCCTCCCCCTAACCAGATGGAGACACAGATGCTATAATGGATGATGGATATGGAAGACAAAAGCCTTCTAATTCATTGCAATCATAATTTACTGAGGACTGTAGA-GGTCCCACGTGGGACACTGACACTGGAATTG-TCTCTACCAGGCATAGAGAATGTTTCGTGT----TTAAAGCCCAAGCAAATTCTAAACAC-ATAATTTGGGCCATAC-TTTTAT-TCTGGTAGGGGATAAGCCCTACCATTTGGA---ACTCCTTGTG----GAGAGTCCTAAGCCAGGAGCCAACTGGACATTTTCCCAAAGGCTGAGTAGTATCATCTGCTGAGCCCACAGAATTG------AAAACACCCCCTTGAACAGGCCTT--------------TGTCATATTTTACATGGACACCAACAAGCCCCAAA----------------CCTGAATTC--------------------TCCTCCCACCTGGAATTTCTTC--TGACTT-----AGGAACAACAGGGCAGCCCAGCCAGCGTCTCAGGTCAGCAATTATTTCTCAACTGGCACATGTTTCGTTTCACAGTGTGGCATGAGATCAGGCTGAAAGCTTCAC---AGAACTAGGCCTGCTCAGGCAGGCCA-GGGCTGAGGCCCAGCAGGAGATAGTGGCAGAAGGTATCACACCACAAGTTTCCAACCCTCCTCCAGGAGGCCAGTGGTAATCATAATGCCCGCCCCT
i macFas5.chr3             C 0 I 341
s papAnu2.chr3             163374459 3364 + 180432695 GAAGTTTCCTGATGTAATTAAGGGTACACAGCCCTGTCTCTTCTGGGTGGCATAGTCATTCCCAACTTTGTTTCCCGTTACCTGGAGAAAGTCTGTCCA----GACCGTGGCTTCCAGAAGGACAGGTAGCAG-CTCCCCAATCTCCTCCATCGTCACTGTAAGTGAAGTCAGGTTCAGCCCCCATGGGCTCTGCTCATGGGGTGGGCCAC---CAT-TCCTTCCTACCACAAACCACTTTTCTCGGACTGGAGAAGGG--ACTGCAGCACACATgttcatgttaaaatgtgaactttaattgtaaaaatcattttctgtaaatatagtTA-TATCAACCTCTCTGCACACAACTTGGTtcatatatatacagatatgaTATTCATAGATGTT-ATTTGTACCACAGAACAAAATCAATGCAAGAAACATTTACTCTTAGCTTCAGGATTAACCCCAGCTTTCTTTAGGCC-TTAAAATTAC-CACCACTGGAAAC----AGAGAGCACGGCATACCTGGGCACACCAGTGTTCAGGGCAAAATTTATGAAGTGTC----TTACTAATTTCATAATATGAGGTAAAGacccaaaac-aaaaatagattcaGTCTCTTGTATTGCTGTAACTCTTAGGCTGGgg-tattaatcaaaataggattTTTACATTTAAGGCGACA-GGGAGGCTATGCTGATTCTAACtcagaaagaaat--gggaaaacagTTTTTCTAAGGCTAC-AACTATTTGTTT----------AGGCTTATTTTCCCAGACCTAT-------ACAAAAATTCAGTCAACAAACTTTGGGTAAATAAAGGAAATTCATTTTGCTTTCCTCTGCTCTCTGTCCCTAAAGTCACTCATCCAGGCTGGCTGCTCAAACGCCCAGAATCTCCACCATTCTTCACT-----TGACAGTCTTCATGGACACGTTAgacccaaa--ttttttttttgtataacac-----catcttaaaatttttcaatataCTGTATCTTTCTTTAGTTTACCCAAAGGAAGGAGTTTTCACTCTAATGTCA-----ATATATTTGCAACCATCCAACTCAGTGACCTCTGTGTGGACTGTTCACTTTGTGGAT-CATCTCTGGCTAACTGAAAACATCCTGCCTCATCCCCACATTCTCTGAATAGCCTTAGACAGCAAAGTAAATTTATTATTAGTCTAAATAAGCATTCTACAGCAAACATAAGTAATTCACACCTGGCCtgctatga-------aaattaaattttctgaatttagaTCATATTAGCTCTAAAAGCCCCACAGTGTGCTAAAAATCAAGAATAAATTCTAAAAAGATGAAAGCAAGGCTTT-TTTCTC-----CATCATTTC-CTTATAGAGCACT-AG-AAAATTCTTATTCCCCTTCAAAATTTGCAATTTCATCCAACTGCCCCTAAATTCTAGTTCCAAAAACGAATTAAAGTGCCA-GTTATAACACTacc-tcccactcccacctctcTC-----AAGAAAGAGGCCT---AAAAATAAGAATGATGACATTTACCCTTTTTTGTACTAGAGCTTTACTTAAGGTTGGTATTTTTATGTCAACCTTCCTAGGACTGTCA-AGTCTACCTCCTAAAGAGCA-TGTCAAGATTTCATAGCACAATCTCCTTATTCACTCTCCAAATTATT----TACAAAGTAAAACTTCTATGGGGTCTCAGCCACCACCAAATTACAAAA-CTGCCCATTTTTTCTagaataatagttttaaaattttcttcca---tttcagtaTATGCATACTCAGTTTATCACATAGTaatatcaataaaaaaataaacttccattTCTTATAAGAAAAACATTAACTTAATTCACAGTTAGCCTTTTCCCACAACACTCAAGACTCCAGTAGCTTCTAGGAACAGAGGTATATTagtaataaaaatggaatatt-aaaaatCCATGACTTGGGAGTAAACGGAGCCCTTAACTCCTCCTCTCCCCCTACCTGAATCAGAAAAGGGTTTTCCTGAAATGAGAGGGGACGGGACTGGGGTCAGCAGGATTCTCACCTC--GGTATAA-------CTACAAGGTACAGGGGAGAAGACAGGAGGGATGGCCATTTGGCAGAATCCAAGCCTACTAGCTTGGGATCTATTAGGGAGATAAAAGCCTATGCCTGGCATATTGGTCCCCAATCTGATTTTCTTGCCCATGTTAGAACTGTCATCACACTAAGGCAAGTTCACTGCCAAGCTGAGCATTATCCTG---TTTTATTCATCCACCTGCCC---ACTCCTCCTCTACCTCTGCAAGGATGACCTATACAGGGAC-TGGAGAAAGCATCTCAATCCATTCCCCAGGCTGTGCAGTTTCAGA--------GGGAAATAAATGGTCCCTCGGGTCTCTGCCTCTTCTCGGAGGGTTGATGTCCTACAACTGAAAGCCTAATTCATTACTGCCCTTTACAAAAGCTTCCCCGAAGGCCTCAGTTTAAAAGTGAGT-GATTTCATCTTT-TATTGTGTTTGAAGGGCTTTCAGTGTATCAAGACTGAGAGCAAATTCATCCTTATAGCCAccagaatgaaa--aacaa-tgatTTAGCTAAGATTTAATTTATCT------------TCTAGCTAAAGTCTCATCGGTAGTTACATG-ATCAACAAATGTTCACATGTGGCATCTGGAAGCACGTGCACCTGTGTGCTAG-CTTAACTTTCTTGTCTTGACTTTAAAGTGGAACAAAACAAGGTAAGTTATAGATGCAAGTTCCTAAGCTAAATTACTTCTATTGATACATCAATGATTTCAGCTTCCCTCCCCCTAACCAGATGGAGACACAGATGCTATAATGGATGATGGATATGGAAGACAAAAGCCTTCTAATTCATTGCAATCATAATTTACTGAGGACTGTAGA-GGTCCCAGGTGGGACACTGACACTGGAATTG-TCTCTACCAGGCATAGGGAATGTTTCATGT----TTAAAGCCCAAGCAAATTCTAAACAC-ATAATTTGGGCCATAC-TTTTAT-TCTGGTAGGGGATAAGCCCTACCATTTGGA---ACTCCTTGTG----GAGAGTCCTAAGCCAGGAGCCAACTGGACATTTTCCCAAAGGCTGAGTAGTATCATCTGCTGAGCCCACAGAATTG------AAAACACCCCCTTGAACAGGCCTT--------------TGTCATATTTTACATGGACACCAACAAGCCCCAAA----------------CCTGAATTC--------------------TCCTCCCACCTGGAATTTCTTC--TGACTT-----AGGAACAACAGGGCAGCCCAGCCAGCGTCTCAGCTCAGCAATTATTTCTCAACTGGCACATGTTTCGTTTCACAGTGTGGCATGAGGTCAGGCTGAAAGCTTCACAGGAGAACTAGGCCTGCTCAGGCAGGCCA-GGGCTGAGGCCCAGCAGGAGATAGTGGCAGAAGGTATCACACCACAAGTTTCCAACCCTCCTCCAGGAGGCCAGTGGTAATCAGAATGCCCGCCCCT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110406902 3355 + 127223203 GAAGTTTCCTGATGTAATTAAGGGTACACAGCCCTGTCTCTTCTGGGTGGCATAGTTATTCCCAACTTTGTTTCCCATTACCTGGAGAAAGTCTGTCCA----GACCGTGGCTTCCAGAAGGACAGGTAGCAG-CTCCCCAATCTCCTCCATCATCACTGTAAGTGAAGTCAGGTTCAGCCCCCATGGGCTCTGCTCATGGGGTGGGCCAC---CAT-TCCTTCCTACCACAAACCACTTTTCTCGGACTGGAGAAGGG--ACTGCAGCACACATGTTCATGTTAAAATGTGAACTTTAATTGTAAAAATCATTTTCTGTAAATATAGTTA-TATCAACCTCTCTGCACACAACTTGGTTCATATATATACAGATATGATATTCATAGATGTT-ATTTGTACCACAGAACAAAATCATTGCAAGAAACACTTACTCTT------AGGATTAACCCCAGGTTTCTTTAGGCC-TTAAAATTAC-CACCACTGGAAAC----AGAGAGCACAGCATACCTGGGCACACCAGTATTCAGGGCAAAATTTATGAAGCGTC----TTACTAATTTCATAATATGAGGTAAAGACCCAAAAC-AAAAATAGATTCAGTCTCTTGTATTGCTATAACTCTTAGGCTGGGG-TATTAATCAAAATAGGATTTTTACATTTAAGGCGACA-GGGAGGCTATGCTGATTCTAACTC--AAAGAAAT--GAGAAAACAGTTTTTCTAAGGCTAC-AACTATTTGTTT----------AGGCTTACTTTCCCAGACCTAT-------ACAAAAATTCTGTCAACAAGCTTTGGGTAAATAAAGGAAATTCCTTTTGCTTTCCTCTGCTCTCTGTCCCTGAAGTCACTCATCCAGGTTGGCTGCTCAAACGCCAAGAATCTCCACCATTCTTCACT-----TGACAGCCTTCATGGACACGTTAGACCCAAA--TTTTTTTTTTGTATAACAC-----CATCTTAAAATTTTTCAATATACTGTATCTTTCTTTAGTTTACCCAAAGGAAGGAGTTTTCACTCTAATGTCA-----ATATATTTGCAACCATCCAATtcaatgacctccgcgtggactgttcactttgtggat-catctctggctaattGAAAACATCCTGCCTCA-CCCCACATTCTCTGACTGGCCTTAGACAGCAAAGCAAATTTATTATTAGTCTAAATAAGCATTCTACAGCAAACATAAGTAATTCACACCTGGCCTGCTATGA-------AAATTAAATTTTCTGAATTTAGATCATATTAGCTCTAAAAGCCCCACAGTATGCTAAAAATCAAGAGTAAATTCTAAAAAGATGAAAGCAAGGCTTT-TTTCTC-----CATCATTTC-TTTATAGAGCACT-AG-AAAATTCTTATTCCCCTTCAAAATTTGCAGTTTCACCCGACTGCCCCTAAATTCTAGTTCCAAAAACAAATTAAAGTGCCA-TTTATAACACTACC-TCCCACTCCCACCTCTCTC-----AAGAAAGAGGCCT---AAAAATAAGAATGATGACATTTACCCTTTTTTGTACTAGAGCTTTACTTAAGGTTGGTATTTTTATGTCAACCTTCCTAGGACTGTCA-AGTCTACCTCCTAAAGAGCA-TGTCAAGATTTCATAGCACAATCTCCTTATTCACTCTCCAAATTATT----TACAAAGTAAAACTTCTATGGGGTCTCAGCCACCACCAAATTACAAAA-CTGCCCATTTCTTCTAGCATAATAGTTTTAAAATTTCCTTCCA---TTTCAGTATATGCATACTCAGTTCATCACATAGTAATATCAATAAAAAAATAAACTTCCATTTCTTATAAGAAAAACATTAACTTAATTCACAGTTAGCCTTTTCCCACAACACTCAAGACTCCAGTAGCTTCTAGGAACAGAGGTATATTAGTAATAAAAATGGAATATT-AAAAATCCATGACTTGGGAGTAAACGGAGCCCTTAACTCCTCCTCTCCCCCTACCTGAATCAGAAAAGGGTTTTCCTGAAATGAGAGGGGACGGGACTGGGATCAGCAGGATTCTCACCTC--GGTATAA-------CTACAAGGTACAGGGGAGAAGACAGGAGGGATGGCCATTTGGCAGAATCCAAGCCTACTAGCTTGGGATCTATTAGGGAGACAAAAGCCTATGCCTGGCATATTGGTCCCCCATCTGATTTTCTTGCCCATGTTAGAACTGTCATCACACTAAGGCAAGTTCACTGCCAAGCTGAGCATTATCCTG---TTTTATTCATCCACCTGCCC---ACTCCTCCTCTACCTCTGCAAGGATGACCTATACAGGGAC-TGGAGAAAGCATCTCAATCCATTCCCCGGGCTGTGCAGTTTCAAA--------GGGAAATAAATGGTCCCTCGGGTCTCTGCCTCTTCTCAGAGGGTTGATGTCCTACAACTGAAAGCCTAATTCACTACTGCCCTTTACAAAAGCTTCCCTGAAGGCCTCAGTTTAAAGGTGAGT-GATTTCATCTTT-TATTGTGTTTGAAGGGCTTTCAATGTATCAAGACTGAGAGCAAATTCATCCTTATAGCCACCAGAATGAAA--AACAA-TGATTTAGCTAAGATTTAATTTATCT------------TCTAGCTAAAGTCTCATCGGTAGTTACATG-ACCAACAAATGTTCGCATGTGGCATCTGGAAGCATGTGCACCTGTGTGCTAG-CTTAACTTTCTTGTCTTGACTTTAAAGTGGAACAAAACAAGGTAAGTTATAGATGCAAGTTCCTAAGCTAAATTACTTCTATTGATACATCAATGATTTCAGCTTCCCTCCCCCTAACCAGATGGAGGCACAGATGCTATAATGGATGATGGATATGGAAGACAAAAGCCTTCTCATTCATTGCAATCATAATTTACTGAGGACTGTAGA-GGTCCCAGGTGGGACACTGACACTGGAATGG-TCTCTACCAGGCATAGGGAATGTTTCATGT----TTAAAGCCCAAGCAAATTCTAAACAC-ATAATTTGGACCATAC-TTTTAT-TCTGGTAGGGGATAAGCCCTACCGTTTGGA---ACTCCTTGTG----GAGAGTCCTAAGCCAGGAGCCAACTGGACATTTTCCCAAAGGCTGAGTAGTATCATCTGCTGAGCCCACAGAATTG------AAAACACCCCCTTGAACAGGCCTT--------------TGTCATATTTTACATGGACACCAACAAGCCCCAAA----------------CCCGAATTC--------------------TCCTCCCACCTGGAATTTCTTC--TGACTT-----AGGAACAACAGGGCAGCCCAGCCAGCGTCTCAGGTCAGCAATTATTTCTAAACTGGCACATGCTTCATTTCACAGTGTGGCATGAGATCAGGCTGAAAGCTTCACAGGAGAACTAGGCCTGCTCAGGCAGGCCA-GGGCTGAGGCTCAGCAGGAGATAGTAGCAGAAGGTATCACACCACAAGTTTCCAACCCTCCTCTAGGAGGCCAGTGGTAATCATAATGCCCGCCCCT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23753289 3287 - 128169293 --------------------------------------TCTTCTGGGTGGTGTAGTTATTCCCAACTTTGTTTCCCATTACCTGGAGAAAGTTTGTCCT----GATCGTGGCTTCTAGGAGGACAGGTAGCAG-CTCCCCAATCTCCTCCATCATGACTGTAAGTGAAGTCAGGTTCAGCCCC--ACAGCTCTGCTCGTGGGGTGGGCCAC---CAT-TCCTTCCTACCACAAACCACATTTCTTGGACTAGAGAAGGG--ACTGCAGCACACATGTTCATGTTAAAATGTGAACTTTAATTGTAAAAATCATTTTCTGTAAATATAGTTA-TGTCAACCTCTCTGCACACAACTTGGTTCAGATATATACAGATATGATATTCATAGATGTT-ATTTGTACCACAGAACAAAATCAATTCAAGAAACATTTACTCTTAGCTTCAGGATTAACCCCAGCTTTCTTTAGGTC-TTAAAATTAT-CACCACTGGAAAC----AGAGAGCACGGCATACCTGGGCACACCAGTATTCAGGGCAAAATTTATTAAGTGTC----TTACCAATTTCATAATATGAGGTAAATACCTGAAACAAAAAATAGATTCAGTCTCTCGTATTGCTATAATTCTTAGGCTGGGT-TCTTAATCAAAATAGGAGTTTTACCTTTAAGGCGACA-GGGAGGCTATGCTGATT----CTTAGAAAGAAAT--GGGAAA--AGTTTTTCTAAGGCTAC-AACTATTTGTTT----------AGGCTTATTTTCCCAGACCTGT-------ACAAAAATTCAGTCAACAAGCTTTGGGTAAATACAGGAAATTCATTTTGCTTTCC----------GTCCCTGAAGTCACTCATCCAGGTTGGTTGTTCCAAAGCCAAGAATCTCTACCATTGTTTACT-----TAACAATCTTTGTGGCCACATTAGACCGAAA---CTTTTTTTTG--TAACAT-----CATCTTAAAATTTTT-AGTATACTTT----TTGTTTAGTTTACCCAAAGGAAGGAGTTTTCATTCTAATGTCCATTATATACATTTACAACCATCCAACTCAGTGACCTCTGTGTGAACTGTTCACTCTATGGAT-CATCTCTGGCTAATT-AAAACATCCTGCCTCACTCCCACACTCGCTGACTGGCCTCAGAGAGCAAAGTAAATTTATTATTAGTCTAAATGAGCATTCTACAGGAAACATAAGTAATTCACACCTGGCCTACTAGGA-------AAATTAAATTTTCTGAATTTAGATCATATTAACTCTAAAAGCCCCACAGTATGCTAAAATTCGAG----AATTCTAAAAAGATGAAAGCAAGGCTTT-TTTTTC--CATTGTCATTTCTTTTTTATAGCACT-AG-AAAATTCTTACTCCCTTTCTAAATTTGCAATTTCATCCAACTGCCCCTAAATTCTAGTTCCAAAAATGAATTAAAGTGCCA-GTTATAAATCTCCCATCCCACTCCCACCTCTCTCCAGTTAAGAAAGAGGCCCAAAAAAAAAAAGAATGATGCCATTTACCCTTTTTTGTACTAGAGTTTTACTTAAGGTTG----------GTCAACCTTCCTAGGACTGTCA-AGTCTACCTCCTAAAGAGTGCTGTCAAGATGTTATAGCACAATCTCCTTATTCA--TTCCAAATCATT----TACATAGTAAAACTTCTATGGGGTCTCAGCCACTACCAAATTACAAAA-CTGCCCATTTCCTCTAG---AATAGTTTTAAAATTTCCTTCCA---TTTCAGTATATGCATACTCATTTCATCACACAGTAATATCAATAAAAAAATAAACTTCCATTTCTTATAAGAAAAACATTAACTTAATTCACAGTTAGCCATTTCCCACAACACTCAGTACTCCAGTAGCTTCTAGGAACAGAGGTATATTAGTAATAAAAATGGAATATT-AAAAATCCATGACTTGGGAGTAAATGGAGCCCTTAACTCCTCCTCTCCCCCTACCTGAATCAGAAAAGAGTTCTCCTGAAATGAGAAAGGACGGGAC--GTGTCAGCAGGATTCTCACCCCAAGGTATAA-------CTATAAGGTACAGGGGACAAGACAGGAGCACTGGCCATTTTGCAGAATCCAAGCCCACTAGCTTGGGATCTATTAGGGAGATAAAAGCCCATGCCTCACATATTGGTCCCCATGCTAATTTTCTTGCCTGTGTTAGAACTGTCATCACAATAAGGCAAGTTCACTGCCAAGCTGAGCATTATCCTA---TTTTATTCATCCACCTGCCC---ACTCTTCCTTTACCTCTGCAAGGCTGACCTATACAGCGAC-TGGAGAAAGCATCTCAATCCAGTCCCTGGGATATGCAGTTTCAAA--------AGGAAATAAATGGTCCCTCGGGTCTCTGCCTCTTCTAGGAGGGTTGATGTCCTACGACTGAAAGGCTAATTCATTACTGCCCTTTACAAAAGCTTCCCTGAAGGCCTGAGTTTAAAGGTGAGT-GATTTCATCTTT-TAGTGTGTTTGAATGGCTTTCAGTGTATCAAGACTGATAGCAAATTCATCCTCATAGCCCCCAGAATGAAA--AACAA-TGATTTAGCTACG-----ATTTATGT------------TCTAGCCAAAAGATCATCAGTAGTCACACA-GTCAG-AAATCTTCACATGTGGCATCTGGGAGCATCTGCACC-GTGAGCTAT-CTTAACTT-----TCTTGATTTTCAAGTAGAACAAAACAAGATAAGTTACAAATGCAAGTTCCTATGCTAAATTACTTCTATTGATACATCAGTGATTTCAGCTTCCCTCCCCTTAACCAGATGGAAGCAGAGATGCTGTAACAGATGATGGATATGGAAGGCAAAAGC---CTAATTCACTGTAATCATAATTTACTGAGGATCGTACA-GGTCCCAGGTGGGACACTGACACTGGAATGG-TCTCTACCAGGCGTAGGGCATATTTCACAT----TTAAAGCCCAAGCAAATTCTAAACAC-ATAATTTGGCCCATGCTTTTTAG-TCTGGTAGGAGAGAAGCTCCACTATTTCTA---ACTCCTTGTG----GAGAGTCCTAAGCCAGAGGCCAACTGGACATTTTCCCAAAGACTGAGTAGTATCATCTGCTGAGTCTACAGAATTG------AAAACACCCCCTTTAACAGGCCTG--------------TGTCATATTTTACATGGATACCAACAAGTTCCAAA----------------CATGGATTC--------------------CACTCCCATCTGGGA--TCTTC--TAACTT-ATTCAGGAACAATAGGGCAGCCCAGCCAGCATCTCAGGTGAGCAAGTATTTCCAAACCAGCACATGGTTCA-TTCACAGTATGGCATGCGATCAGGCTTAAAGCTTCACAGGAGAACTAGGCCTGCTTAGGCAGGCGA-GGGCTGAGGCCAGGCAGCAGATAGTGGCAGAAGGTATCACACCACAGGTTTCCAACCCTGCTCCAGGAGGTCAATGGTAATCATCATGCCCACCCCT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40401138 3151 + 149736546 GAAGCTTCCTGTGGGGATTAAAGGTACAAGGTCCTGGTTCT--------------------CTGACTTTAGTTTCCATTATGTGGAGAGTGTTTATCCA-----ACTGCAGCCTCTCACAGGACCAGCTAGAG-CTCCCCAGTGTCTGTCCTTGTGTCTGTGAGTAAAAGCAGCCTTGATCCCT-TGGGCTCTATCCGTGGGCTAGGCCATCGGCAT-TCCTTCCTACCAAAAACTACAT-----------GGTAAAAG--ATCACAGCACACAGGCTCATGTTAAAATGTGAACTTTAATTGTAAAAATT-TCTTTTGTAAATATAGTTATTATCAAC--CTCTGCACATAACTTGGTTCAGATATATACAGATATGATATACACAGGTGTTAACTTGTACCACAGAA-AGAATCAATTCAAGAAACATTTACACTTAGCCTTGGGGTTAAGCCCACCTTCCTTCAGGTC-TGTAAATAATACTCCATTGAGGAC----ACAGAA-AGGATACATCGGTTTGCAGTAGTACCCAGAGCAAAACTTACCAATTATC----CTTCTGACTTTGT--CATGAGGTAAAGACTTGAAAC-AAAAATAGATTAGGGTTCTTTTATTGCTATAACTTTTAGACTGGGGTTGTTTCTCAAAATAGG-TTTTTACATTTAAGGCAACA-GGGACACTATGTTTA----AAAAAAAAAAAAAACTAGGAAAAACAGATTTCCT-TGATTAC-CATGACTTCTTTTTTTCAG-GAAAGATTATATTC-TAGACTTAT-------GCAAAAATTTATC---CAAGTTTTGGGCAAATAAATGAAGTTGATTTTGTTTATCTCTGACCCAAAGCCTGGCAGCCACTTATGCA----GGCAGTTCAAGAGGACAGAATCCC--CCATTTCTCATGGCTGATGGCATTTCTGAAGGGCAAG-GAAAATGAAC---TTTGGGTTTGCCTGACTTTCATATATATATATATATGTAAAAAAACTCT--CCTTGCTTAATTTACCCAGA---------------TACAATGTCAGTTACATATATTTT-------------------CTTTTTTATGGGCTTTTCACTTTGCAGCTCCATCTATGCACAATTTATAAAACCCTGCCCTGTCCCAGTGAGCCCC-AGTATCATTAAGAAGCAAAGTAAACTCA---GCAAACCACACAGGCA-CCTGCTGCAAATGCAAACAA-----ACCC--TCTGCTGTA-------------AACCTGTCAGAATTTAAGTCAACATGGTTCTGAGAG-GCAGCGCCATGCTGACGTTCTAGAGGAATCTCTAAAAGG---------AGTTTTA-TTCCTCCCCATTTTCATTTC-TCTATATAGCACCAAA-AAAAGTCCTATTCCTTTTCTAATTTTACAGTATCACCCAAC----------TTCCAGCCACTAAAATGAATTAAAGTGCCA-GGCAGCAGACTACC-TCCCATTCCCCTCTCTCTCTCTTGATCAAGAAGGACT---AGTCATTGAAAGGCT---ATTTGCGCACTTCTGTTCTACAGATTTGCCCAAGGTCACTGTCCCTCT---CATCTTGCCAGGCCAGTTG-ACTTTCTCTCCTGTAATGGC-TGCTGAAATAATACAGCAGAGAGTGTGTGCTCATGCTTCAAAACCCTGTCACAGACAGCGACATGTCTA-AGGGCCTCCACTGCTATTAAGCCACAAAAGCTGCCCGTTGCTGTTTAGATGATAACTTTGCAATTCCTTTCCAATGCTTCAG--------TACTTAATTCACCATTCAGTAACACTGGTATAAAAATAAACTTCCATTTCCCATAGGAAAAGCATTACCTTAATTCACCGT---CTTTTCCCCACCACACTGGGTACCTCAGTAGCTCCTGGGAACAGAGGTATATTAGCTAT-AAAGTGGCATAGT-CAAAGCCCATGACTTGGGTTTAGAGGGAGCCCTTAACTCCTTCCTTTCCCCTACCTGA--CTGAAAAGGGTTTTCATAAAATGAGAAGGGATGAAATTGGGCTTGCTAAGGTAAGC-TATG--GGCAGAA-------CTATGCGCTAT-GAGGGAGAGATGGGATG--------CTGGACAGCCTATTAGCCTATTAGCCTGGAAGC--CTAAGGGGAAGACGTCCTA----------ATGGA---------TGATGCTCTT------------------CTCATAATAAGGCATGTTCACTGTGAGACCCAGCGTTATCTTACAGCTCTGTTCACCCA--TACCCCATAGCCCTTCTTTACCTCTGCAAGGACCATC-GCACTGGACT-TGGAGGAAGCATCTCAGTCCACTCTCT-GGCTGTGCAGTTT---A--------GGGGAAAAGACAGTTCC-CAAGTCCCTGCATC-TCTAGGAGG-CTGAC-TTCTACCACCAGG----TAATTCACTAGCACTCTTGG-AGAAGTCTCCCCAAAAGCTTCTGTGGAAGGGTAAGTCCATTTTACCTCT---CTGCA-TTGATAGGCTTTCAGTTCCTCAAGAC----AGGAGGTTCGTCCCCCTTGCCTCCAGAATGAAGGCAGCAA-----TTAGCCACGGTTTAATTTACCT-------TATTATCTAGCTAAGATATATTAGGTAATTGTGTA----AGCAAACCTTCCCATGAAGCATCTGGCACTAT-TGTATCTGAGCGTCAC-TCTCAC---CTTTCCGTGGTTTCC-----------AGCAAGGTAAGTTATAGTTTCAGGTTCTTATCCTA----ACTTCTAT---CCCAGCAATGTAACCAGCTCGTCTCC--------------------AGAAGCCAGGGTGGGTGGGAGGTATGGGAGGCAAACACCTCCTGTCGCATTGTACTCCTAACTGATTGA--ACCATATG-GGCCCCAGGTAGGACACCAACATTGGCCTGGATCCATGCCCAGCACAGGGAAGGCTTCATGT----TTAAAGCTAACACTAATACCAGGCA--ATGACTTGGCCTTCCT-TTATAG-ACTGGTAGGAGATAAGCTCTGCTATTTTTACTGCTTCCAAGGA----AAGAGTCCTGAGCCAGGCAACAACTAG---------------CTGGGCATTACCATCTGCTG-----ACAAAACTG------CAAACACCCACTTTAAGAGGCTCTTGTTCTACTCAGTATGTTGTACTTAACATGGATGTCCACGTATCCAAAACCCCAGTGTCGGGCCCCCTGAAGAT--------------------GGTTACCATTGGAAATCTCTTC--TACCTT-----AAAAATGACTGAA-----TAGCCAGCAATGCAAGTCAGCAAGTGCTTCCAGGTTAACACATGGTTCCCAGCATGGTACAGGAGGGGATTAGT------GCTCCCCAGAAGGGTTCTGCCAGCTCTGGCAGGGGT-CTGATGAGAGCCACCAGCAGA--ATGGCAGGA---CCCACATCTGAGATTT-TAGCCCTCTTCCTAGAGGCCAGTGTTTAGAAAAATGCCTGTCTCT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52073454 3270 -  59632846 GAAACTTCCATGTGTGGCT--GTGTGCACAGTCCTGGCCATCCTGGATGGCACGGTTACTCCGAGCTCTGGTTCCCGTTACCTCGAGGTGGTTTATGCAGACAGACCATGGCCTGTAGGAGGGCAGGTCCCAGACTCACTGGGTCACTCTGTTGTT-----------------------------TGTGCTCTGA-CATGG----GGCCAC---CCTCTCCTTCCTCCCATAAAGCACACTTCTCAGACTGGTGAAAGACCACTGCA-CACACATGTTCATGTTAAAATGTGAATTTTAATTGTAAAAATTGTATTCTGTAAATATAGTTA-TATCCAC--CTCTGCACACAGCTTGGTTCAGATATATACAGATATGATATACACGGATGTT-ATTTGTACCACAGAACAAAATCCATT----AAACATTTACTCCTAGCTCCAGGATTAACCCCAGCTTTCTTTAGGCCATTAAAATCAT-TACCATTCACAAC----GGA----ACAACATACCTATATGCACTAGTATTCAGGGTAAAATTTATCAACTGTCAATTTAATTAATTTCATACTATGAGGTAAAGAATTTAAAC-AAAAATAGATTCAGTGTCTCTTATTGCTGTAACTCTTATGCTGGGG-TGTTAATCAAAATAGGGATTTGACACTTAAGGCGACAGGGGGGGCTATGCTGATCCTAAC-AGGAGAAAAAT--AGGAAAACCATTTTTCCAAGACTACAAACTATTCCTTT--TTCAGAAAAGGTTTAT-TTCCCAGACCtataaaaaaaaaaaaaatttaGCCAACAAGC-TTGGGTAAATAA--GAGGTTAATTTTGCTTTCCTCTACTCTGTACCCCTAGAGTCTCCTACCCA----GTCTGTCCAAAAGCACAGAATTGACACCCTCTGTAAGT-----C--TGGTCTTCGTGGGCACTCTACAC--AAA---CTATTCC-----TAATGC-----TGCCTTAAATATTTTTGTCGACTTTTATCTTCTCTTGATTTGGCCAAAGGA---AGTTTTCACTCCAACGTCAATGAACTATATTTGCTACCAGCTAATTCAGTGACCACCG---------------TTGTGGAT-CATCCCAGGCTAATTTCTAAGGCCCTAACCTA--CCCGTGTTCCCCAACTGTCCTCAGAAAGCAGAGTAAATGTATTGTTAGCCTAAACCGGCATTCTACAACAAAC----GTAATTCACACCCATCCTTCTACCATGGTAAGTAAATAAATTTTCTGAATTTAGGCTATGTTAACACTAACAG-CCCATGGGATGCTGAGCTTCTAGAATAAAG-----------------AGGGCTTTATTTCTC--TATTATCATTTA-T-----AAGCACT-AGAAAAACTCTTACTTCCTTTCTAAATGTGCAGTTTCATCCAACTGCCCCTGTATTCCAGCTCCAGAAAAGAATTAAAGTGCCAGGTTATAAAATCACA--------------CCGCTC-----CAGTAAGCAGCTC---ACTAATCAGCATTATCACGTTTACACGCTT-TGTACGGGAATTTTCCCTAAGGTCGGGG--ACTGTGTCATCCACCCCAGGACCGTCACGGTTCATCTCCTAGAGAGTGCGGTTAAGAC--CGCAGCACCGTCTCCTTATTCACACTCGAAAACAAA-------------ACTTTTCTATGGAGTCTCGGTTGCTTCCAGATTACACAA-CTTGGCATTTCTTCAAGGATTATAGTTTTGAAATGTCCTTCCA---TCTCAACATCTGCACACTC----CATCACACAGTAGTATCGATAGAAAAATAAACTCCCATTTCTTATAAGAAAAACATTAACTTAATTCACAGTTGGCCTTTCTCC-CAACACTC------TTAGCAGCTCCTGGGAACAGAGGTATATTCATTCTCACAACGGAATACTAAAAAATCCACGGCTCAGGAGTAAGAGGAGCCCCGGACTCCTCGCCGTCCCCTACCTGAATCAGAAAAGGGTTTTCCTGGAATGAGAAGGGACAGGTC--GCATTTGCAGGAGCCTCACCACAGGGCCTGAAGCAGGGCTGAGAAGGGC-GGTGGGAAGATCCTCGGGCTGG--ACCTCACAGGTTCCCGGCCTGCTGGCGAGGAACCAGACGGTGAGGCGGAAGCCCCTGCGTGATGTGTTGGTCCCGGGT-TGCCTTTCTTGCCTATTTCAGAACCAATATCCTACAGAGCAAAGTTCACTATCAAGCTGACCGTGGCCT-----TTTAATTTTTTCA---GCTC----CTCCTCCCTCATCTCTGCAAGTGTGATCCATATGGGGACTTGGAGAAAGCGTCTCAA-CCATTCCCTGGGCTATACAGTTTTAGAAAAAGAAGGGGGGGGGAAAGTTCCCTGAGGTCCCTGCCTCTTCCCAGAAGGTTTTTGTCCTCCCATTAAAAGTTTAATTCATGACTGCCCTTTACAGAAGGTTCCCAAAAGGCCTCAGTTTAAAGGTGAAT-CATCTCATCTTTTTATTGCGTTGGAAGGGCTTTCAGTGTATCAAGACAAATAGCAAGTTTATCCTCCTAGCCACCAGAATGAAA--AACACCCGACTCAGCTAGGATTTAATTTATCTTTACCTTTGTCTTCTAGCTAAAATGCCA--GGTGGTTACGCGGATACATCAGTCCACACGGGTGGCATTTAGAACGGCCTGTGCCC-TGTGCTACACTTAAAATTCTCATCTTGATTTTCACATGGAACAAAACAAGGTACATTACAGATGCAAGTTC-TGGGCTAATTTATTTCTATCATT--ATCAATGAATTCGGCACCCATTC-CCTGGCCAAATGGAGGA--AGCTGCCATGCTGGACA-------------GCCAGTGCCTTCCAATCCATGGCAGTC--------CTGAGGACGGTGCGTGGCCCCAGGGGGCACACCGGAACGGA------TCCACCCCAGGCCTAGGGCCTGCTCCATGCCTCATTAAAGCCCTAGCTAATTCTAAACAA-A----TTGGCCCATAT-TTTTGGCTCTCATAGGAGATAAATCCTACCATTTCTG---ACTCTTCCTGAAGAAAGAATCCTAAGCCTGAGCACAGTTGGACATTTTCTCCAAGGCTGAATATTAGCGTCTGCCAAGCCTGCAGAATTGAAAAAAAAAAAAACCACTTTAATAGGCCTT--------------AGTCGCAATTTGC-TGGACTTCAATAAACCTCAGG----------------CCTGGATTCTTGCTTGGCCCCATTGGGAATCCTGCCACCTGGCTTTTCTCTGAGGACTTGATTCAGGAATGA--GAGCAGCCCAG---GTGTCTCAGGTCAGCAG-TGTTTCCAGAGGAGCACGTGGCTCA-----CAGCTTGGCATCAGATCAGGCTTCAAA-TTCTTGGAAGGGCCAAGCCAGCTGAGGCAGGGGAGGGGATGAGGTTCAACAGTCCAGGGGGGTCGC---TCCCCGGCCCCAGGCTCCCAGCCCCACTTCAGGAATCCA-TGGTAATC---ATCCCTGCTGCT
i canFam3.chr16            C 0 C 0

a score=312491.000000
s hg38.chr7_GL383534v2_alt     26425 84 +    119183 AAAGAGCTTACAGAC-CTAGAAGTCTGTGA--ACGATGTTCAGCACTTTCTTCTGAACAAAAGCAGATGGTTTCTCAGAAAATATTT
s panTro4.chr7             143126671 84 + 161824586 AAAGAGCTTACAGAC-CTAAAAGTCTGTGA--ACGATGTTCAGCACTTTCTTTTGAACAAAAGCAGATGGTTTCTCAGAAAATATTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138930828 84 + 157549271 AAAAAGCTTACAGAC-CTAGGAGTCTGTGA--ACGATGTTCAGCACTTTCTTCTGAACAAAAGCAGATGGTTTCTCAGAAAATATTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93068068 84 + 110113093 AAAGAGCGTACAGAC-CTAGAAGTCTGTGA--ACGATGTTCAGCACTTTCTTCTGAACAAAAGCAGATGGTTTCTCAGAAAGTATTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180966970 84 + 198365852 aaaGAGCTTACAGAC-CTAGAAGTCTGTGA--ACGATGTTCAGCACTTTCTTCTGAACAAAAGCAGATGGTTTCTCAGAAAATATTT
i rheMac3.chr3             I 413 C 0
s macFas5.chr3             174712696 84 + 192294377 aaaGAGCTTACAGAC-CTAGAAGTCTGTGA--ACGATGTTCAGCACTTTCTTCTGAACAAAAGCAGATGGTTTCTCAGAAAATATTT
i macFas5.chr3             I 341 C 0
s papAnu2.chr3             163377823 84 + 180432695 AAAGAGCTTACAGAC-CTAGAAGTCTGTGA--ACGATGTTCAGCACTTTCTTCTGAACAAAAGCAGATGGtttctcagaaaatattt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110410257 84 + 127223203 AAAGAGCTTACACAC-CTAGAAGTCTGTGA--ACGATGTTCAGCACTTTCTTCTGAACAAAAGCAGATGGTTTCTCAGCAAATATTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23756576 84 - 128169293 AAAGAGCTTACAGAC-CTAGAAGTCTGTGA--ACAATGTTTACCACTTTCTTCTGAACAAAAGCAGATGGCTTCTCAGAAAATATTT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40404289 77 + 149736546 -----GCTAATGGTC---AGAAAGCTATGA--AGGATGTGAACTAACTTCTTCCAAATAAAGCCAGATGGGTTTTCAGAAAGTATTT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52076724 87 -  59632846 CCAGACCTGATGGACCCTACGAGGCAGGAACGAAGATGCTGGCCCAGGTCTTCTGAACAGAAGCAGAAAGGTTTTAAGGAAATCTTT
i canFam3.chr16            C 0 C 0

a score=413385.000000
s hg38.chr7_GL383534v2_alt     26509 403 +    119183 CAAGACTGGCAGAAAAGCAGGTCCACATGGCTCCTAGCTTCTGCTGCCACTGT---GGAATT---------------------------CCCTAGTAGAGAACTGGTAGCAAAGGATCCTAGGTTGTGCCTGTTAATCTGTCATGTTG-----------------GGGAGCAGAATCTGGCATAGAGCAAGGCTTCGAAAGGTGATTTCCGAAGCCACAGGCTC-CACTTCATAGCCCAGGCAAGACATACTCTGAGGATGCTCAACAGTGGCAAAGGTAACTGAAGA-GATAAAGCACACGCTGTTCAGCCAAGCAGAGGCTCTGCACAAGATTTCTGGTCCTATGAAGAAGCTGGCAAGGTAGGGAAGGACCAATTTATTGGAATCTCTCTTAAAG----------------GGAGAAGTTCTGCAT-TGGGGTCAGCTGAGCCCAAGGCCCCTATGACCTGAAACA
s panTro4.chr7             143126755 403 + 161824586 CAAGACTGGCAGAAAAGCAGGTCCACATGGCTCCTAGCTTCTGCTGCCACTGT---GGAATT---------------------------CCCTAGTAGAGAACTGGTAGCAAAGGATCCTGGGTTGTGCCTGTTAATTTGTCATGTTG-----------------GGGAGCAGAATCTGGCACAGAGCAAGGCTTCGAAAGGTGATTTCCGAGGCCACAGACTC-CACTTCATAGCCCAGGCAAGACATACTCTGAGGATGCTCAACAGTGGCAAAGGTAACTGAAGA-GATAAAGCACACGCTGTTCAGCCAAGCAGAGGCTCTGCACAAGATTTCTGGTCCTATGAAGAAGCTGGCAAGGTAGGGAAGGACCAATTTATTGGAATCTCTCTTAAAG----------------GGAGAAGTTCTGCAT-TGGGGTCAGCTGAGCCCAAGGCCCCTATGACCTGAAACA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138930912 403 + 157549271 CAAGACTGGCAGAAAAGCAGGTCCACATGGCTCCTAGCTTCTGCTGCCACTGT---GGGATT---------------------------CCCTAATAGAGAACTGGTAGCAAAGGATCCTGGGTTGTGCCTGTTAATTTCTCATGTTG-----------------GGGAGCAGAATCTGGCACAGAGCAAGGCTTCAAAAGGTGATTTCCGAGGCCACAGGCTC-CACTTCATAGCCCAGGCAAGACATACTCTGAGGATGCTTAACAGTGGCAAAGGTAACCGAAGA-GATAACGCACACGCTGTTCAGCCAAGCAGAGGCTCTGCACAAGATTTCTGGTCCCGTGAAGAAGCTGGCAAGGTAGGGAAGGACCAATTTATTGGAATCTCTCTTAAAG----------------GGAGATGTTCTGCAT-TGGGGTCAGCTGAGCCCAAGGCCCCTGTGACCTGAAACA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93068152 403 + 110113093 CAAGACTGGCAGAAAAGCAGGTCCACATGGCTCCTAGCTTCTGTTGCCACTGT---GGGATT---------------------------CCCTAGTAAAGAACTGGTAGCAAAGGATCCTGGGTTGTGCCTGTTAATTTCTCATGTTG-----------------GGGAGCAGAACCTGGCACAGAGCAAGGCTTCAAAAGGTGATTTCCAAGGCCACAGGCTC-CACTTCATGGCCCAGGCAAGACATACTCTGAGGATGCTCAACAGTGGCAAAGGTAACCGAAGA-GATAACGCACACGCTGTTCAGCCAAGCAGAGGCTCTGCGCAAGATTTCTGATCCTATGAAGAAGCTGGCAAGGTAGGGAAGAACCGATTTATTGGAATCTCTCTTAAAG----------------GGAGAAGTTCTGCGT-TGGGCTCAGCTGAGCCCAACGCCCCTATGACCTGAAACA
i nomLeu3.chr13            C 0 C 0
s calJac3.chr8              23756660 400 - 128169293 CAAGACTGGCAGAAAAGCAGGTCCACATGGCTCCTAGCTTCTGTTGTCACTGT---GGAATT--------------------------CCCCTTGTAGAGAATGGGCAGCAAAGGATCCTGGGTTGTGCCTGCTAATTTCTGATGTGG-----------------GGGAGCAGAATCTGGTACAAAGCAAGCCTT----AGGTGATTTCGGAGGCCACAGCCTC-CACTTCATAGCCCAGGCAGGACATACTCTGAGGATGATCAACGGTGGCAAAAGTAACCAAAGA-GATAACGCACATGCTGTTCAGCCAAGCAGAAACTCTAAGCAAGATTTCTGGCCCTTTGAAGAAGCTGGCAAGGCAGGGAAGGACCAATTTCTTGGGATCTCTCTTAAAG----------------GGAGAAGTTCTGCAT-TGGGGTCAGCTGAGCCCAAGGCCCCTATGACCTGAAATA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40404366 386 + 149736546 CAAGAGTGACGGGCAAGCACATCC-TGTGGCTACTAGCTTCTGCTGTCACTGTAAAGAGATTCCTATAGAGTTCTACACAAACTACTTCCCTTCATAGGAAACTCACAGAATATTATGCAGACTTGCATCTGCCCA-CTGCCACG-GG-----------------GGGAGCAG--TCTGGTAT-------GACTTCATA--GTGATGT-----------GGCTCACATCT-----------CAAGACTTACTCTGCAGCTGATAAAAGGGGGCAAAGGGTACAAGGGGTGCTGACATACACACTG-TCGGCTACACAGACAC-CTGTGCCATG-TTCTGGCCCTATGAGGAAACTGGCAAGGTAAGGAAAGAC--------TGAAGGAGATGTTGAA-----------------CAAGAAGTTCTGCTTCTGGGGGCTAGCAAGCCCAGAG--CCTAAGACCTAACACA
i mm10.chr6                C 0 I 348
s canFam3.chr16             52076811 409 -  59632846 CAACAAGGACTCGAAAGCAGGT----GTGGCTTCTAGCTTCTGCTGTTACTGC--AGGGAGTCCTTCCAGGTATACCTTGCACCAGTTCCCCTCTTAGCGAAGGGGCAGCAAATGATGCCGGG-TGCAGCTGCAACCTGGACATACTGTGGGGGGAGAGGGGGATGGGAGCAGAGTCAGGTCCAAAGTCAGTCTTCGAAAGGTGAGCTCAGAAACTGGAGGCTT-CATATCACAATCCAGGCAAGAAATACTCAGGGGAGGGTGGACAGTGACAAAGGGGAATACAGA-GCCGGGGGGCATGCTG--------------------------GACTTCCGGCCCC-TAAGGAAGCTGGCAGG----GGAAGGACTGAGTCCTTGGGTTCTCTCTGAAAAGGGCTACAGGGTGGCTGGGGGAGTTCTGTGT-GGGGGTCGGCAGAGCCCAGG-------------------
i canFam3.chr16            C 0 C 0
e chlSab2.chr21            110410341   0 + 127223203 C
e papAnu2.chr3             163377907   0 + 180432695 C
e macFas5.chr3             174712780   0 + 192294377 C
e rheMac3.chr3             180967054   0 + 198365852 C

a score=2910.000000
s hg38.chr7_GL383534v2_alt     26912 3 +    119183 TGG
s panTro4.chr7             143127158 3 + 161824586 TGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138931315 3 + 157549271 TGG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93068555 3 + 110113093 TGG
i nomLeu3.chr13            C 0 C 0
s calJac3.chr8              23757060 3 - 128169293 TGG
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40404752 348 + 149736546 I
e canFam3.chr16             52077220 0 -  59632846 C
e chlSab2.chr21            110410341 0 + 127223203 C
e papAnu2.chr3             163377907 0 + 180432695 C
e macFas5.chr3             174712780 0 + 192294377 C
e rheMac3.chr3             180967054 0 + 198365852 C

a score=895472.000000
s hg38.chr7_GL383534v2_alt     26915 297 +    119183 CACTGCCTCACTGGCACGTTCTCCTCTGGGGCCACCCATACCCTGGCCCTCTGCATGAGCAGGAGGGTGGAC---ACGTGGAGATGTGAGACAGAAAGCTACCGAGACAAGCACAAAGTTAAGGGAACCCAGAAGCCCTGACTCACCATTCAAAGG-AAAAAACAGGAACTTCATTCTCACCCTGCTATGTTTACACCAGCACTTCTGAGCTTGCAG-TTAAAACTGC---------------------AGTGTTTGCATATAGAAGG--CTCAGAGCAGAAATGCC--TCAAACAGCTCCTTCCGGCAGATTCCCTAATTCCAGAA
s panTro4.chr7             143127161 297 + 161824586 CACTGCCTCACTGGCACATTCTCCTCTGGGGCCACCCATACCCTGGCCCTCTGCATGAGCAGGAGGGTGGAC---ACGTGGAGATGTGAGACAGAAAGCTACCGAGACAAGCACAAGGTTAAGGGAACCCAGAAGCCCTGACTCGCCATTCAAAGG-AAAAAACAGGAACTTCATTCTCACCCTGCTACGTTTATACCAGCACTTCTGAGCTTGCAG-TTAAAACTGC---------------------AGTGTTTGCATATAGCAGG--CTCAGAGCTGAAATGCC--TCAAACAGCTCCTTCCGGCAGATTCCCTAATTCCAGAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138931318 298 + 157549271 CACTGCCTCACTGGCATATTCTCCTCTGGGGCCACCCGTACCCTGGCCCTCTGCATGAGCAGGAGGGTGGAC---ACGTGGAGATGTGAGACGGAAAGCTACTGAGACAAGCACAAAGTTAAGGGAACGCAGAAGCCCTGACTCACCATTCAAAGGAAAAAAACAGGAACTTCATTCTCACCCTGCTACATTTACACCAGCACTACTGAGCTTGCAG-TTAAAACTGC---------------------AGTGTTTGCATACAGAAGG--CTCGGAGCAGAAATGCC--TAAAACAGCTCCTTCCGGCAGATTCCCTAATTCCAGAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93068558 297 + 110113093 CACTGCCTCACTGGCACATTCTCCTCTGGGGCCCCCCATACCCTGGCCCTCTACATGAGCAAGAGGGTGGAC---ATGTGGATATGTGAGACAGAAAGCTACCGAGACAAGCACAAAGTTAAGGGAACCCAGAAGCCCTGACTCACCATTCAAAGG-AAAATACAGGAACTTCATTCTCACCCTGCTACGTTTACAGCAGCACTTCTGAGCTTGCAG-CTAAAACTGC---------------------AGTGTTTGCATATAGAAGG--CTCAGAGCAGAAATGCC--TAAAACAGCTCCTTCCGGCAGATTCCCTAATTCCAGAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180967054 288 + 198365852 CACTGCCTCACTGGCACATTCTCCTTTGTGGCCACCCATACCCTGACCCTCTGCATGAGCGGGAGGGTGGAC--------------TGAGACAGAAAGCTACCGAGACAAGCACAAAGTTAAGGGAACCCAGAAGCCCTGACTCACCATTCACAGG-AAAATGCAGGAACTTCATTCTCACCCTGCTATGTTTACACCAGCACTTCTGAGCTTGCAG-TTAAACCCGC----------A---------GAGTGTTTGCATATAGAAGG--CTCGGAGCAGAAGTGCC--TAAAACAGCTCCTCCTGGCAGATTCCCTAATTCCAGAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174712780 288 + 192294377 CACTGCCTCACTGGCACATTCTCCTTTGTGGCCACCCATACCCTGACCCTCTGCATGAGCGGGAGGGTGGAC--------------TGAGACAGAAAGCTACCGAGACAAGCACAAAGTTAAGGGAACCCAGAAGCCCTGACTCACCATTCACAGG-AAAATGCAGGAACTTCATTCTCACCCTGCTATGTTTACACCAGCACTTCTGAGCTTGCAG-TTAAACCCGC----------A---------GAGTGTTTGCATATAGAAGG--CTCGGAGCAGAAGTGCC--TAAAACAGCTCCTCCTGGCAGATTCCCTAATTCCAGAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163377907 288 + 180432695 caCTGCCTCACTGGCACATTCTCCTTTGTGGCCACCCATACCCTGGCCCTCTGCATGAGCGGGAGGGTGGAC--------------TGGGACAGAAAGCTACCGAGACAAGCACAAAGTtaagggaacccagaagccctGACTCACCATTCACAGG-AAAATGCAGGAACTTCATTCTCACCCTGCTGTGTTTACACCAGCACTTCTGAGCTTGCAG-TTAAACCCGC----------A---------GAGTGTTTGCATATAGAAGG--CTTGGAGCAGAAGTGCC--TAAAACAGCTCCTCCTGGCAGATTCCCTAATTCCAGAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110410341 288 + 127223203 CACTGCCTCACTGGCACATTCTCCTTTGTGGCCACCCATACCCTGGCCCTCTGCATGAGCGGGAGGGTGGAC--------------TGAGACAGAAAGCTACCGAGACAAGCACAAAGTTAAGGGAACCCAGAAGCCCTGACTCACCATTCAAAGG-AAAATACAGGAACTTCATTCTCACCCTGCTGTGTTTACACCAGCACTTCTGAGCTTGCAG-TTAAACCCGC----------A---------GAGTGTTTGCATATAGAAGG--CTTGGAGCAGAAATGCC--TAAAACAGCTCCTCCTGGCAGATTCCCTAATTCCAGAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23757063 307 - 128169293 CACTGCCTCACTGGCACATTCTCCTCTGGGGCCACCCATACCCTGGCTCTCTACATGAGCGGGAGGGT-AAC---ACATGGAGATGTGAGACAGAAAGCTACCTAGACAAGCACAA-GTTAAGGGAACCCAGAAGCCCTGACTCACCATTCAAAGG-AAAATACAGGAACTTCATTCTCACCCTACTACCTTGATACCAGCACTTCCGAGCTTGCAGTTTAAAACAGCACAGGAAACAA---------AAATGTTTGCATACAGAAAG--CTTGGAGCAGAAATGCC--TAAAGCAGC-CCTCCTGGCAGATTCCCCAAATCCAGAA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52077220 288 -  59632846 ------CTCACCTGCACACTCCCCT------CCACACGCCCCCTG---CTCTGCACGAGTGCGAGGG--GACCACACAGGAGGCCTCGTGGCCGCCAGC--CTGTTAGAGCCACGAGCTGAAAGGAGCCTGGAGCCCC--ACCCAGCATTCAAAGG-AAAATACTGGAACCTCACTTTCACCTTATGACCTTTACATGAGCACCTGTGAACTTGGAG-TTGCAATTCC----------ACACACACACGAGCATTCGCGTGCAGAAGGGCACGGGCGCAGAAGTCCCCTTCCAACAAC------CAACAATGCCCTCAAGTCCTGAG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40404752 348 + 149736546 I

a score=4363015.000000
s hg38.chr7_GL383534v2_alt     27212 1337 +    119183 --AAAGGAGGTCTTCTTGTGTCCTCTAGGAGAATCAGACCTTTCCTTTCACTTCTACTCCTGCCTC-TAACC-ACCTACCCCCAGCTTAAAACACCCTGAACCTCAGGATACCACGAAAAATAACCATTAC-TTGAC-------AGAAAGGACCCCTCAACCCTTGAGAGGCAAGAAGAGAGGGTTGCATGTAAAGGAGAATAAAAGGTGAGGCTTCAACCTCGAAACACAGA-TTTTTTTTTCTTTTGTAAACATACACATTACTGAAATGACAGC--AA-CCCACATTGCAGAGGAG-AAAAGTCTATTAGCTGT-ACAGTTTACATTTCAATGCCCAAACTTATTTATATATTTACAT-AAAGATGCTACCTTGATTAATCAATGTCTATTTGCATTTCCACATGTG----AATTTCTTCAGTTTTGATATTCCATATGAAGGAGCTACAGTGA-AAACACTTTTGAATAAAGCAGTGAACCCTAAGAATCTTATCTTGAGATGAGATGTGT-GAACCA-CCATTTGAATGTTATTTCTCCCTGCTGTGTACATTAGTCTGGCTGGGTGTTGGTCACAGACATGGATG----CACTGACG-GCTATTCCCATAACCGAGCCAGGCGGGAAGGGGGAAAAGGAAGACATTATTTGTCACCAACAACCCAGTATCCCAAGTCAAAATTCTCAACTATGGCCAAAAAGGCCTAAACTCGACCCACAGGAACTGGCTTTCTAA--CTGGTTGACAAACAC--------GTAAGCTGCCCTCC-------TGCAAAAGCCAA-------------CC--AGAGAA-CAG--GCAGGTGGCAACAGGACCCAGCCTAGAGCAGAGCACTTCAGAAGAGGATGGATAAATCCATCAGGGATGCTCAGGGCTTCCTGACCACTGTCCCGGGT-GAAGGCACTGCCACATTTTCTCTCAACAAATCTGTTATGTCCCTGGATCCAATTATTTAGCCTAAGGAATGTCACCTCTGCTAAAGAGAAGTGTGTTTGTGAGGGGTCCAAAATGATAAACCgtcttgttagcatcatgctccaccctctgagttaaccagctcagaTCCTTGCTAGATTTTGGAATCCA--GTAAATCTGTGTTGACCCAGAGGTG-CTGCTGCTAATGCCTCCAGAGAATTCGTGTCCAGATGAAGAGACTTAGAGTGGCTTCTCCATCCTGCTCGAACTT-CAATTGCTCTAT-CCTCCGGTAGTC-CAAACTTCAGCCTTT-AAAAATACCCAACTTAC-TCCAAGAGCATTATTGAACCCTTAA--GAGACTAAACTGGAAAATTAATTTGCTTGCAAGCTCCAAGGCCAGCATTGGCCCTTAGCAATTCACCAATTCATCCCAAGAAGAGGAAGGTTCAGACAAA-GAGGA
s panTro4.chr7             143127458 1337 + 161824586 --AAAGGAGATCTTCTTGTGTCCTCTAGGAGAATCAGACCTTTCCTTTCACTTCTACTCCTGCCTC-TAACC-ACCTACCCCCAGCTTAAAACACCCTGAACCTCAGGATACCACGAAAAATAACCATTAC-TTGAC-------AGAAAGGACCCCTCAACCCTTGAGAGGCAAGAGGAGAGGGTTGCATGTAAAGGAGAATAAAAGGTGAGGCTTCAACCTCGAAACACAGA-TTTTTTTTTCTTTTGTAAACATACACATTACTGAAATGACAGC--AA-CCCACATTGCAGACGAG-AAAAGTCTATTAGCTGT-ACAGTTTACATTTCAATGCCCAAACTTATTTATATATTTACAT-AAAGATGCTACCTTGATTAATCAATGTCTATTTGCATTTCCACATGTG----AATTTCTTCAGTTTTGATATTCCATATGAAGGAGCTACAGTGA-AAACACTTTTGAATAAAGCAGTGAACCCTAAGAACCTTATCTTGAGATGAGATGTGT-GAACCA-CCATTTGAATGTTATTTCTCCCTGCTGTGTATGTTAGTCTGGCTGGGTGTTGGTCGCAGACATGGATG----CACTGACG-GCTATTCCCATAACCGAGCCAGGCGGGAAGGGGGAAAAGGAAGACATTATTTGTCACCAACAACCCAGTATCCCAAGTCAAAATTCTCAACTATGGCCAAAAAGGCCTAAACTCGACCCACAGGAACTGGCTTTCTAA--CTGGTTGACAAACAC--------GTAAGCTGCCCTCC-------TGCAAAAGCCAA-------------CC--AGAGAA-CAG--GCAGGTGGCAACAGGACCCAGCCTAGATCAGAGCACTTCAGAAGAGGATGGATAAATCCATCAGGGATGCTCAGGGCTTCCTGACCACTGTCCCGGGT-GAAGGCACTGCCACATTTTCTCTCAACAAATCTGTTATGTCCCTGGATCCAATTATTTAGCCTAAGGAATGTCACCTCTGCTAAAGAGAAGTGTGTTTGTGAGGGGTCCAAAATGATAAACCGTCTTGTTAGCATCGTGCTCCACCCTCTGAGTTAACCAGCTCAGATCCTTGCTAGATTTTGGAATCCA--GTAAATCTGTGTTGACCCAGAGGTG-CTGCTGCTAATGCCTCCAGAGAACTCGTGTCCAGATGAAGAGACTTAGAGTGGCTTCTCCATCCTGCTCGAACTT-CAATTGCTCTAT-CCTCCGGTAGCC-CAAACTTCAGCCTTT-AAAAATACCCAACTTAC-TCCAAGAGCATTATTGAACCCTTAA--GAGACTAAACTGGAAAATTAATTTGCTTGCAAGCTCCAAGGCCAGCACTGGCCCTTAGCAATTCACCAATTCATCCCAAGAGGAGGAAGGTTCAGACAAA-GAGGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138931616 1336 + 157549271 --AAAGGAGGTCGTCTTGTGTCCTCTAGGAGAATCAGACCTTTCCTTTCACTTCTACTCCTGCCTC-TAACC-ACCTACCCCCAGCTTAAAACACCCTCAACCTCAGGATACCACGAAAAGTAACCATTAC-TTGGCCTAAGTTAGAAAGGACCCCTCAACCCTTGAGGGGCAAGAGGAGAGGGCTGCATGTAAAGGAGAAAAAAAGGTGAGGCTTCAACCTCGAAACACAGA-TTTTTTTTTCTTTTGTAAACACACACATTACTGAAATGACAGC--AA-CCCACACTGCAGAGGAG-AAAAGTCTATTAGCTGT-ACAGTTGACATTTCAATGCCCAAAGTTATTTATATATTTACAT-AAACATGCTACCTTGATTAATCAATGTCTATTTGCATTTCCACATGTG----AATTTCTTCAGTTTTGATATTCCATATGGAAGAGCTACAGTGA-AAACACTTTTGAATAAAGCAGTGAACCCCAAGAAC-----CTTGAGATGAGATGTGT-GACCCA-CCATTTGAATGTTATTTCTCTCTGCTGTGTATGTTAGTCTGGCTGGGTCTTGCTCACAGACATGGATG----CACTGACG-GCTATTCCTATAGACCAGCCAGGTGGGAAGGGGGAAAAGGAAGACATTATTTGTCACCAGCAACTCAGTATCCCAAGTGAAAATTCTCAACTATGGCCAAAAAGGCCTAAACTCGACCCACAGGAACTGGCTTTCTAA--CTGGTTAACAAACAC--------GTAAGCTGCCCTCC-------TGCAAAAGCCAA-------------CC--AGAGAT-CAG--GCAGGTGGCAACAGGACCCAACCTAGAGCAGAGCACTTCAGAAGAGGATGGATAAATCCATCGGGGATGCTCAGGGCTTCCTGACCACTGTCCTGGGT-GAAGGCACTGCCACATTTTCTCTCAACAAATCTGTTATGTCCCTGGATCCAATTATTTAGGCTAAGGAATGTCACCTCTGCTAAAGAGAAGTGTGTTTGTGAGGGGTCCAAAATGATAAACAGTCTTGTTAGCATCGTGCCCCACCCTCTGAGTTAACCAGCTCAGATCCTTGCTAGATTTTGGAATCCA--GTAAATCTGTGTTGACCCAGAGGTG-CTGCTGCTAATGCCTCCAGAGAACTCATGTCCAGATGAAGAGACTTAGAGTGGCTTCTCCATCCTGCTCGAACTT-CAACTGCTCTAT-CCTCCGGTAGCC-CAAACTTCAGCCTTT-AAAAATACCCAACTTAC-TCCAAGAGCA-TATTGAACCCTTAA--GAGACTAAATTGGAAAATTAATTTGCTTGCAAGCTCCAAGGCCAGCATTGGCCCTTAGCAATTCACCAATTCATCCCAAGAGGAGG--GGTTCAGAGAAA-GAGGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93068855 1335 + 110113093 --AAAGGAGGTCTTCTTGTGTCCTCTAGGAGAATCAGACCTTTCCTTTCACTTCTACTCCTGCCTC-TAACC-ACCTACCCCCAGCTTAAAACACCCTGAACCTCAGGATACCACGAAAAGTAACCATTAC-TTGGCCTAAGTTAGAAGGGACCCCTCAACCCTTGAGAGGCAAGAGGAGAGGGTTGCATGTAAAGGAGAAAAAAAGGTGAGGCTTCAACCTCGAAACACAGATTTTTTTTTTCTTTTGTAAACATACACATTACTGAAATGACAGC--AA-CCCACATTGCAGAGGAG-AAAAGTCTATTAGCTGT-ACAGTTTACATTTCAATGCCCAAACTTATTTATATATTTACAT-AAAGATGCTACCTTGATTAATCAATGTCTATTTGCATTTCCACATGTG----AATTTCTTCAGTTTTGATATTCCATATGAAAGAGCTACAGTGA-AAATACTTTTGAATAAAGCAGTGAACCCTAAGAACCTTATCTTGTGATGAGATGTGT-GACCCA-CCATCTGAATGTTATTTCTCCCTGCTGTGTACATTATTCTGGCTGGGTCTTGGTCACAGACATGCATG----CACTGACG-GCTATTCCCATAACCGAGCCAGGCGGGAAGGGGGAAGAGGAAAATATTATTTGTCACCAACAACCCAGTATCCCAAGTCAAAATTCTCAACTATGGCCAAAAAGGCCTAAACTCGACCCACAGGAACTGGCTTTCTAA--CTGGTTGAC-AACAC--------GTAAGCTGCCCTCC-------TGCAGAAGCCAA-------------CC--AGAGAA-CAG--GCAGGTGGCAAAAGGACCCAGCCTAGAGCAGAGCACTTCAGAAAAGAATGGATAAATCCATCAGTGATAATCAGGGCTTCCTAACCACTGTCCTGGGT-GAAGGCACTGCCACATTTTCTCTCAACAAATCTGTTATGTCCCTGGATCCAATTATTTAGCCTAAGGAATGTCACCTCTGCTA-----AAGTGTGTTTGTGAGGGGTCCAAAATGATAAATGGTCTTGTTAGCATCATGCTCCACCCTCTGAGTTAACCAGCTCAGATCCTTGCTAGATTTTGGAATCCA--GTAAATCTGTGTTGACCCAGAGGTG-CTGCTGCTAATGCCTCCAGAGAACTCGTGTCCAGATGAAGAGACTTAGAGTGGCTTCTCCATCCTGCTCGAACTT-CAACTGCTCTAT-CCTCCAGTAGCC-GAAACTTCAGCCTTTAAAAAATACCCAACTTAC-TCCAAGAGCA-TATTGAACCCTTAA--GAGACTAAATTGGAAAATTAATTTGCTTGCAAGCTCCAAGGCCAGCATTGGCCCTTAGCAATTTACCAATTCATCCCAAGAGGAGG--GGTTCAGAGAA---AGGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180967342 1325 + 198365852 --AAAGG---TCTTCCTGTGTCCTCTAGGAGAATCAGATCTTTCCTTTCACTCCTGCTCCTGCTTC-TAACC-ACCTACCCCCAGCTTAAAACACCCTGAACCTCAGGATACCATGAAAAGTAACCATTA----GCCTTAAGTTAGAAAGGACCCCTCAACCCTTGAGAGGCAAGAGGAGA-GGTTGTGTGTAAAGGGGA-AAAAAGATGAGTCTTCAACCTCGAAACACGGA-TGTTTTTTTCTTTTGTAAACATCTACATTACTGAAATGACAGC--AA-CCAACACTGCAGAGGAG---AAGTGTATTAGCTGT-ACAGTTTACATTTCAATGCCCAAACTTATTTATATATTTACAT-AAAGATGCTACCTTGATTAATCAATGTCTATTTGCATGTCCATGTGTG----AATTTCTTCAGTTTTGATATTCCATATGAAGGAGCTACAGTGA-AAATACTTTTGAATAAAGCAGTGAACCCTAAGCACCTTATCTTGAGATGAGATGTGT-GACCCA-CCATTTGAATGTTATTTCTCTCTGCTGTGTACGTTAGTCTGGCTGGGTCTTGGTCACAGACGTAGATG----CACTGACG-GCTATTCCCATAATCGAGCCAGGCGGGAAGGGGGAAGAGGAAGACATTATTTGTCACCAGCAACCCAGTATCCCAAGTCAAAATTCTCAATCATGGCCAAGAAGGCCTAAACTCAACCCACAGGAACTGGCTTTCTAA--CTGGTTGACAAACAC--------GTAAGCTGCCCTCC-------TGCAAAAGCCAA-------------TC--AGAGGA-CAG--GCAGGTGAAAATGGGACCCAGCCTAGAGCAGAGCACTTCAGAAGAGAATGGTTAAATCCATCAGTGATGCTCGGGGCTTCCTCACCACTGTCCTGGGT-GAAGGCACTGCCACATTTTCTCTCAACAAATCTGTTATGTCCCTGGATCCAAAGATTTAGCCTAAGGAATGTCACCTCTGCTAAAGAAAAGTGTGTTTGTGAGGGGTCCAAAATGATGAACGGTCTTGTTAGCATCATGCTCCACCCTCTGAGTTAACCAGCTCAGATCCTTGCTAGATTTCGGAATCCA--GAAAATCTGTGTTGATCCAGAGTTG-CTACTGCTAATGCCTCCAGAGAACTCATGTCCAGATGAAGAG----AGAGTGACTTCTCCATCCTATTCGAACTT-CAACTGCTCTAT-CCTCCAGCAGCC-CAAACTTCAGCCTTT-AAAAATACCC--CTTAC-TCCAAGAGCA-TATTGAACCCTTAA--GAGACTAAATTGGAAAATTAATTTGCTTGCAAGCTCCAAGGCCAGCACTGGCCCTTAACAGTTCACCAATTCATCCCAAGAGGAGG--GGTTTAGAGAAA-GAGGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174713068 1327 + 192294377 --AAAGG---TCTTCCTGTGTCCTCTAGGAGAATCAGATCTTTCCTTTCACTCCTGCTCCTGCCTC-TAACC-ACCTACCCCCAGCTTAAAACACCCTGAACCTCAGGATACCATGAAAAGTAACCATTA----GCCTTAAGTTAGAAAGGACCCCTCAACCCTTGAGAGGCAAGAGGAGA-GGTTGTGTGTAAAGGGGATAAAAAGATGAGTCTTCAACCTCGAAACACGGA-TGTTTTTTTCTTTTGTAAACATCTACATTACTGAAATGACAGC--AA-CCAACACTGCAGAGGAG---AAGTGTATTAGCTGT-ACAGTTTACATTTCAATGCCCAAACTTATTTATATATTTACAT-AAAGATGCTACCTTGATTAATCAATGTCTATTTGCATGTCCATGTGTG----AATTTCTTCAGTTTTGATATTCCATATGAAGGAGCTACAGTGA-AAATACTTTTGAATAAAGCAGTGAACCCTAAGCACCTTATCTTGAGATGAGATGTGT-GACCCA-CCATTTGAACGTTATTTCTCTCTGCTGTGTACGTTAGTCTGGCTGGGTCTTGGTCACAGACATAGATG----CACTGACG-GCTATTCCCATAATCGAGCCAGGCGGGAAGGGGGAAGAGGAAGACATTATTTGTCACCAGCAACCCAGTATCCCAAGTCAAAATTCTCAATCATGGCCAAGAAGGCCTAAACTCAACCCACAGGAACTGGCTTTCTAA--CTGGTTGACAAACAC--------GTAAGCTGCCCTCC-------TGCAAAAGCCAA-------------TC--AGAGGA-CAG--GCAGGTGAAAATGGGACCCAGCCTAGAGCAGAGCACTTCAGAAGAGAATGGTTAAATCCATCAGTGATGCTCGGGGCTTCCTGACCACTGTCCTGGGT-GAAGGCACTGCCACATTTTCTCTCAACAAATCTGTTATGTCCCTGGATCCAAAGATTTAGCCTAAGGAATGTCACCTCTGCTAAAGAAAAGTGTGTTTGTGAggggtccaaaatgatgaacggtcttgttagcatcatgctccaccctctgagttaaccagctcagaTCCTTGCTAGATTTCGGAATCCA--GAAAATCTGTGTTGATCCAGAGTTG-CTACTGCTAATGCCTCCAGAGAACTCATGTCCAGATGAAGAG----AGAGTAACTTCTCCATCCTATTCGAACTTCCAACTGCTCTAT-CCTCCAGCAGCC-CAAACTTCAGCCTTT-AAAAATACCC--CTTAC-TCCAAGAGCA-TATTGAACCCTTAA--GAGACTAAATTGGAAAATTAATTTGCTTGCAAGCTCCAAGGCCAGCACTGGCCCTTAACATTTCACCAATTCATCCCAAGAGGAGG--GGTTTAGAGAAA-GAGGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163378195 1328 + 180432695 --AAAGG---TCTTCCTGTGTCCTCTAGGAGAATCAGACCTTTCCTTTCACTCCTGCTCCTACCTC-TAACC-ACCTACCCCCAGCTTAAAACACCCTGAACCTCAGGATACCATGAAAAGTAACCATTA----GCCTTAAGTTAGAAAGGACCCCTCAACCCTTGAGAGGCAAGAGGAGA-GGTTGTgtgtaaaggagaaaaaaagatgagtCTTCAACCTCgaaaca--aa-tgtttttttcttttgtaaacatCTACATTACTGAAATGACAGC--GA-CCAACACTGCAGAGGAG---AAGTGTATTAGCTGT-ACAGTTTACATTTCAATGCCcaaacttatttatatatttacat-aaagatGCTACCTTGATTAATCAATGTCTATTTGCATGTCCACGTGtg----aatttcttcagttttgaTATTCCATATGAAGGAGCTACAGTGA-AAATACTTTTGAATAAAGCAGTGAACCCTAAGCACCTTATCTTGAGATGAGATGTGT-GACCCA-CCATTTGAATGTTATTTCTCTCTGCTGTGTACGTTAGTCTGGCTGGGTCTTGGTCACAGACATAGATG----TACTGACG-GCTATTCCCATAATCGAGCCAGGtgggaagggggaagaggaagaCATTATTTGTCACCAGCAACCCAGTATCCCAAGTCAAAATTCTCAATCATGGCTAAGAAGGCCTAAACTCAACCCACAGGAACTGGCTTTCTAA--CTGGTTGACAAACAC--------GTAAGCTGCCCTCC-------TGCAAAAGCCAA-------------TC--AGAGGA-CAG--GCAGGTGAAAATGGGACCCAGCCTAGAGCAGAGCACTTCAGAAGAGAATGGATAAATCCATCAGTGATGCTCGGGGCTTCCTGACCACTGTCCTGGGT-GAAGGCACTGCCACATTTTCTCTCAACAAATCTGTTATGTCCCTGGATCCAAAGATTTAGCCTAAGGAATGTCACCTCTGCTAAAGAAAAGTGTGTTTGTGAGGGGTCCAAAATGATGAACGGTCTTGTTAGCATCATGCTCCACCCTCTGAGGTAACCAGCTCAGATCCTTGCTAGATTTCGGAATCCA--GAAAATCTGTGTTGATCCAGAGTTG-CTACTGCTAATGCCTCCAGAGAACTCATGTCCAGATGAAGAGACTTAGAGTGACTTCTCCATCCTGTTCGAACTT-CAACTGCTCTAT-CCTCCAGCAGCC-CAAACTTCAGCCTTT-AAAAATACCC--CTTAC-TCCAAGAGCA-TACTGAACCCTTAA--GAGACTAAATTGGAAAATTAATTTGCTTGCAAGCTCCAAGGCCAGCACTGGCCCTTAACAGTTCACCAATTCATCCCAAGAGGAGG--GGTTTAGAGAAA-GAGGA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110410629 1325 + 127223203 --AAAGG---TCTTCCTGTGTCCTCTAGGAGAATCAGACCTTTCCTTTCACTCCTGCTCCTGCCTC-TAACC-ACCTACCCCCAGCTTAAAACACCCTGAACCTCAGGATACCACGAAAAGTAACCATTA----GCCTTAAGTTAGAAAGGACCCCTCAACCCTTGAGAGGCAAGAGGAGA-GGTTGTGTGTAAAGGAGAAAAAAAGATGAGTCTTCAACCTCGAAACACAGA-TGTTTTTTTCTTTTGTAAACATCTACATTACTGAAATGACAGC--AA-CCAACACTGCAGAGGAG---AAGTGCATTAGCTGG-ACAGTTTTCATTTCAATGCCCAAACTTATTTATATATTTACAT-AAAGATGCTACCTTGATTAATCAATGTCTATTTGCATGTCCACGTGTG----AATTTCTTCAGTTTTGATATTCCATATGAAGGAGCTACAGTGA-AAATACTTTTGAATAAAGCAGTGAACCCTAAGCAC-----CTTGAGATGAGATGTGT-GACCCC-CCATTTGAATGTTATTTCTCTCTGCTGTGTACGTTAGTCTGGCTGGGTCTTGGTCACAGACATAGATG----CACTGACG-GCTATTCCCATAATCGAGCCAGGCGGGAAGGGGGAAGAGGAAGACATTATTTGTCACCAGCAACCCAGTATCCCAAGTCAAAATTCTCAATCATGGCCAAGAAGGCGTAAACTCAACCCACAGGAACTGGCTTTCTAA--CTGGTTGACAAACAC--------GTAAGCTGCCCTCC-------TGCAAAAGCCAA-------------TC--AGAGGA-CAG--GCAGGTGAAAATGGGACCCAGCCTAGAGCAGAGCACTTCAGAAGAGAATGGATAAATCCATCAGTGATGCTCGGGGCTTCCTGACCACTGTCCTGGGT-GAAGGCACTGCCACATTTTCTCTCAACAAATCTGTTATGTCCCTGGATCCAAAGATTTAGCCTAAGGAATGTCACCTCTGCTAAAGAAAAGTGTGTTTGTGAGGGGTCCAAAATGATGAACggtcttgttagcatcatgctccaccctctgagttaaccagctcagaTCCTTGCTAGATTTCAGAATCCA--GAAAATCTGTGTTGATCCAGAGTTG-CTACTGCGAATGCCTCCAGAGAACTCATGTCCAGATGAAGAGACTTGGATTGACTTCTCCATCCTGTTCGAACTT-CAACTGCTCTAT-CCTCCAGTAGCC-CAAACTTCAGCCTTT-AAAAATACCC--CTTAC-TCCAAGAGCA-TATTGAACCCTTAA--GAGACTAAATTGGAAAATTAATTTGCTTGCAAGCTCCAAGGCCAGCACTGGCCCTTAACAGTTCACCAATTCATCCCAAGAGGAGG--GGTTTAGAGAAA-GAGGA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23757370 1330 - 128169293 --AAAGGAAGTCTTCCTGTGTCCTCTAGGAGAATCGGGCCTTTCCTTTCAC-CCCACTCCTGCCTCTTAACC-ACCTACCCCCAGCTTAAAACAACCTGAGCCTCAGGATACCACGAAAAGTAACCATTAC-TTGGCCTAAGTTAGAAAGGACCCATCAACCCTTGAGAGGCAAGAGGAGAGGGTTGCATGTGAAGGAGA-AAAAAGGTGAGGTTTCAACCTCAAAACATGGATTTTTTTTTTCTTTCGTAAACATACACATTACTGAAATGATGGC--AA-CTCACAGTGCAGAG------AAGTGTAGTAGCTGT-ACAGTTTACATTTCAATGCCCAAACTTATTTATATATTTACAT-AAAGATGCTGCCTTCATTAATCAATGTCTATTTGCATTTCCACATATG----AATTTCTTCAGTTTTGATATTCCATATGAAGGAGCTATAGTGAGAAACACTTTTGAATAAAGCA-TGAACCCTAAGAACCTTATCTTGGGATGAGGTGTGT-GACCCA-CCATTTGAATGTTATTTCTCTCTGCTGTGTACATTAGTCTGGCTGGGTCTGGGTCACAGACATGGATGTATTCATTGAGGTGCTATTCCAATAACACAGCCAGGTGGGAAGGGTAAGGAGGAAGAAATTATTTGTTGTCAACAACCCGGTATCCCAAGCCAAAATCCTCAACCATGGCCAAAAAGGCCTAAACTTGACTCACAGGAACTGG----CTAA--CTGGCTGACAAACAC--------ATAAGCTGCCCTCC-------TGCAAAGGCCAA-------------CCAGAGAGAA-CAA--ACCGGTAGCAACGAGACCCAGCCTAAAGCAGAGCACTGCAGAGGAGGATGGATAAATCCATCGCTGATGCTCAGGG-TTCCTGACCAGTGTCCTGGGT-GTGACCACTGCCACATTTTCT---AACAAATCTGTTATGTCCCTGAATCCAATTATTTAGCCTAAGGAATGTCTCCTCTGCTAAAGAGAAGTGTGTTTGTGAGGGGTCCAAAGTGATAAATGCTCTTGTTAGCATCATGCTCCA-CCTCTGAGTTAACCAGCTCAGACGCTTGCTAGATTCTGGAATCCC--GTAAATCTGTGTTGACCCAGAGGTG-TTGGTACTAATGCCTCCAGTGAACTCACGGCCAGATGAAGCGACTTAGAGTGGCCTCTCTATCCTGCTCAAACTT-CAACTGCTCTAT-CCTCTAATGGCC--AAACTTTACCCTTT-AAAAATACCCAACTTAT-TCCAAGAGCA-CAGTGAACCCTTAA--GAGACTAAATTGGAAAATGAATTTGCTTGCAAGCCTCAAGGCCACCATTAGCCCGTAGTAATTCACTAATTCATCCCAAGAAG-----GGTTCAGAGAAA-GAGGA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40405100 1046 + 149736546 --GAAGAGGGGCTTCC--AGTCCCTCAGAAG-------------------------CTCCTATCTC-TGGCT-ATCTACCCCTGACTT---------TGAGCTTTAGCG-ACCAAGGGAAGTTGTTGCTCCATCAGCATCAGGTAGTCCCCACTGCTCAGCCCT---GGGGCAAGAGGAAAAGGTAGCCCT--AAGGACA-AAGCAGGAGAAACTTCAGCCACTGAGCACAGC-TGTTTTCT------GTAAACAT-TGTGTTACTGGAATGATGGCTAAA-CCCACACTGCAGAGGAGAAAAAATCAATTAGATGGAACAGTTT--ATGTCAGTGCCTAAAC----TTATATATTTACAGAAAAGACGTTACCCTGACTCATCAGTGTCTGTTGGCATTCTCACACACACACCAACCTCTTTACTCTTGG-ATTTTTTATCAAGGAGCTACAGTGA---ACATTCTTGAGCTAAGCAATAAGCCTCAAGAAC-----CCAGAACTAAGAGGCATGGACCCT-CTCTTTGA-----AGTTCTCTCTGCTGTGGGCATCAACCTGGCTGCTCTTTAGCTACAGACATGGATG----T-CTGATG-GCT---------GGCTAGCTAG-------------------------------------------------------------------------------------------CTATTCACA-----TGGCTTTCTGAATATGGTTCAC-----------------AGCTGCCCTCCAACATAGTGCATGAGTCCAAAGTATCCCAGCCCC--AAAGAA-CA-----AAGTGACCGCA-GTCCCATCACAGACCAAA-------AGAAGCAGG----------CATGGTTGTTAGTCTGGGATTTCCAGCCATTCTCTTGGATGGGAGGCACTGTTATGTTTTCCCT-GACAAATCTGTTAGGTTCCTTG---------CTTAGCCTAAGGAATGTTGTCTCTACTTCAGAGA----TGTCTGTGGGAGTTTCACATTGGTAAAGAGACCTGTTAACATCACATTGCAAC--CTGAGTTAACCAGCTTGGGCCCTGGCTATATTTCAGAATTCATCAGAAGTATCTGCTG---TAGGACTGACTGTGTACCATCCCTCCACAGAGCTCT--------TAGAGAAACTGGAAACTTCTTCCCTTACCTATTTGAACCT---------------------------------------GTT-A-----------GTTAG-TTCAAGAGGA-TATTCAATGCTTAT--GAGTCTA----------------------TAAGCT-CAGGGCCAGCACCACCCTTCAGCACT-----------GACCAAGAGGA----------------------
i mm10.chr6                I 348 I 68
s canFam3.chr16             52077508 1223 -  59632846 GAAGAGG------ACCTATGTCCACCGAGAGAACGTGACCCTTCCCGCCAGCCCTACCCCTGCTTC-GGGCAGACCAGCCCCTAACTACGCAAACCTTGAGCCTTCAGACAGCAC-------TGCCAT------GACCCAGGTCAGAAAGGCCGCTCCTTCCCC--AGAGACCAGACAT---CGTTGCTCTTCAAGGAAA-GAGGTGGTGAAGCTTC---------------------------TTATGTAAACACATGTATTACCGACACGATGGT--AAGCCCACACTGCAGAGGAG-AGAAGTGTAGTAGTTGT-ACAGTTTATGTGTCAATGCCCGAACTTCTCTATATATTTACATAAAAGAGGTTACTTTGATGAACCAATATGCGTTTGCATTTTTATATGTG----AATTTCTTTAGTCTTGA-ATCCCGCATCAAGGAGCTACAGTGA--AATATTTCTGAATAAAGCAGTGAGCCCTAAAAAGCTAGTCTTGAGATAGGACATGT-GATCCATCCGTCCGAAAGTTATTTCTTTGTG---------------TGGCTGGAACCCAGTCACACACATGGATA----C----GTG-GCGAGGCCAACGACACAGCCAGGCAAGAAGGTCGAAAGGGAACAAA----TCGTCACCAGTAACCCAGGAGCCCGAGTCAAAATTGGAAACTCTGTCCCAAAAGACCTAAGCTCTGCGTGCGAGAGCCGGCTT--CAA---------ACAACTACCGTCTCCTCTAAGTTGGCACCC-------CTGGAATGCCCA-------------GA--AGAGAAGCAGCAGCAGGGCCCCACGGGAGTCGTCCCAGACCAAAACGTGTGAGGGGAATACGGGCAGACTCCCCCCTGAC-CTCAGGGGTTCC-AACCACTTCCCTAGGT-GAAGGCACTGTCAAATTCGCT---GACAAATGTGTTA-GTCTCTGGCCCCAATTACTGAGCTCAGGGAATGTCATCTCTGCCCAAGAGAA----ACTTGTGAAGCCTCCAAA-------------TTGGTAGAGTCTTGCTCTAAACTCTTGAGTAACCAGCTCAGATCCTTGCTCGATTACGGAATCCA--CTGAATCTCTTTTGATCCAGAAGCC-CTGCTAGCAACGTGTCCGGAGGACACATTCTCGGGTGGAGAAACAT-------CTTCTCCATCCTGTTTGAACCC-CAACTGCTCTACACCTTTGGTGGCAACCAACGTTACTCTTT-AAAAATACCTAAATTACTTCCAAGAGAA-TAGTTAGCCCTTAAAGGAAACTAAACGGTAAAGTGAATTTGCTTGCAAGGTCCGGGGCCA-----------------------------TCCCTAGAGGAGGGGGATTCGGAGAGAGGAGGA
i canFam3.chr16            C 0 C 0

a score=481620.000000
s hg38.chr7_GL383534v2_alt     28549 143 +    119183 ACATTACATTGCATGGCCACCATCAAGTTACTTTGAGGAAGGTTTCCAGGCTTCATTCTATAATTTTAGTTTTCAGCTCACTGATAAGCAA------CCTCTTTCATTCTGACCATAAGATAAGCTCATATTTGGTGTCAGAAACATCC
s panTro4.chr7             143128795 143 + 161824586 ACATTACATTGCATGGCCACCATCAAGTTACTCTGAGGAAGGTTTCCAGGCTTCATTCTATAATTTTAGTTTTCAGCTCACTGATAAGCAA------CCTCTTTCATTCTGACCATAAGATAAGCTCATATTTGGTGTCAGAAACATCC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138932952 143 + 157549271 ACATTACATTGCATGGCCACCACGAAGTTACTTTGAGGAAGGTTTCAAGGCTTCATTCTATAATTTTAGTTTTCAGCTCACTGATAAGCAA------CCTCTTTCATTCTGACCATAAGCTAAGCTCATATTTGGTGTCAAAAACATCC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93070190 143 + 110113093 ACATTACATTGCATGGCCACCACGAAGTTACTTTGAGGAAGGTTTCAAGGCTTCATTCTACAATTTTAGTTTTCAGCTCACTGATAAGCAA------CCTCTGTCATTCTGACCATAAGATAACCTCAAATTTGTTGTCACAAACATCC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180968667 143 + 198365852 ACATTACATTGCATGGCCACCATGAAGTTACTTTGAGGAAGGTTTCAAGGCTTCAATCTACAATTTTAGTTTTCAGCTCACTGATAAGCAA------CCTCTGTCATTCTGACCGTAAGATAAGCTCACATTTGGTGTCAGAAGCATCC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174714395 143 + 192294377 ACATTACATTGCATGGCCACCATGAAGTTACTTTGAGGAAGGTTTCAAGGCTTCAATCTACAATTTTAGTTTTCAGCTCACTGATAAGCAA------CCTCTGTCATTCTGACCGTAAGATAAGCTCACATTTGGTGTCAGAAACATCC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163379523 143 + 180432695 ACATTACATTGCATGGCCACCATGAAGTTACTTTGAGGAAGGTTTCAAGGCTTCAATCTACAATTTTAGTCTTCAGCTCACTGATAAGCAA------CCTCTGTCATTCTGACCGTAAGATAAGctcacatttggtgtcagaaacatcc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110411954 143 + 127223203 ACATTACATTGCATGGCCACCATGAAGTTACTTTGAGGAAGGTTTCAAGGCTTCAATCTACAATTTTAGTTTTCAGCTCACTGATAAGCAA------CCTCTGTCATTCTGACCGTAAGATAAGCTCACATTTGGTGTCAGAAACATCC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23758700 131 - 128169293 ACATTACATTGTATGGCCACCATTAAGTTACCTTGAGGAAGGTT------------TCTACAATTTTAGTTTTCAGCTTACTGATAAGCAA------CTTCTGTCATTCTGACTGTAAGATAAAGTCACATTTGATGTCAGAAACATCC
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52078731 145 -  59632846 GTATCACACTGAGTGGCCGCT---AATCTACTCTGAGGAAAGTCTCAAGGCTTCATTCTACAATTTTAGTTTCCAGCTGGCTGGTAAGAGAAGCCTCTTCCTGTCATTCTGTGC-CGAGAGAGGTTCACACTTAGTGAGAGAAACATCC
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40406146  68 + 149736546 I

a score=4029574.000000
s hg38.chr7_GL383534v2_alt     28692 1084 +    119183 TTTTTT-CCCTCTTTGTGGTCCCTACTCAAGTAAACAGAGAAGACATAAAGTTGCCCTAATGAACAAGAAAAGGGATTTGATCCCAAGACTATAgactcctagaactactaaaaaccttaaaagatcatctggtctagtt--tctgcctttaggcagatgaacatc-taaggccaca-ggggacaggtggttgtcttattctcaaatacatcaaggg---ac-aaagaccacacagactttctgaacagtccatcccaatgtttCCAGAGCTCAGCCTACTCCTAGTGATA---------------------------------------------------CAACTCCCATGACCAAGCCCAGAGGACCAGCAGCTCTGGGAGAAAGTGGCAGATTCCAATATCCTAACATGGCAGGACACAAAACCAAGGTGATCTCACCTTATCTCTA------------GGGA-AAAGGGCAGAAAGGAAATTGCAAAAATTATGTTTGTTGGAAAGTATAAACAATATTCCTTTGTGTCAACTTAAT--AAAAAATGAGGCCCTCTGGGGCCCTGGGGTGAACTCCGGGCTGCTGACATCCCACGTGAA-GTGGCTC----CCAGTC-CTGTTGGCTCCTCCTACGGGCAACAGGGGTTGTCGATAACCAGCATGACATCAATGCCATAGGCCTCCAGCAGGTCCAGGAGAAAGCTCCGGTCTCCTTGGGGGTCTAGGCCCATGCCCCGGGCATGCTCTGCTGTCAGAGTTTTGTCTTGACTGGCAGACACCTCCAACAAAGTCTGAAATATCCGGTTGTTTTGTTCTAGGAAAAACCTGCATTTGGAAGACAAGACACAGGAAAGGAAGCGGGGGG--------------------GAATAAAAAGCTCA-CCAGATAATCCACATATGGGGAACCAAAACTATACTGTTTTGTTTAATGTACTTTTCAGTGGATTCG----CAGGTATCTTTT--AAAAAAA-----GAAA--AGAGTAAAAGTT----AATTATTCAAGTGCTACTAAGG-TTAGCAAAGAAACCATTTGGCATTAATTATGGTGTGATTAGGGAAATCTCTAAGCAAG--ATGGCCTGTC-----AAAAT-------------------------------CCATTTTCCTGTT----------------------------GAGGGAAGTGACCTGGGTTTAAACACAG--CCTGAGAAGAGGCCCCCAAACACTGCTTT-----TCTCTCTTTCTG
s panTro4.chr7             143128938 1084 + 161824586 TTTTTT-CCCTCTTTGTGGTCCCTACTCAAGCAAACAGAGAAGACATAAAGTTGCCCTAATGAACAAGAAAAGGGATTTGATCCCAAGACTATAgactcctagaactactaaaaaccttaaaagatcatctggtctagtttctctgcctttaggcagatgaacatc-taaggccaca-ggggacaggtggttgtcttattctcaaatacatcaaggg---ac-aaagaccacacagactttctgaacagtccatcccaatgtttCCAGAGCTCAGCCTACTCCTAGTGATA---------------------------------------------------CAACTCCCATGACCAAGCCCAAAGGACCAGCAGCTCTGGGAGAAAGTGGCAGATTCCAATATCCTAACACGGCAGGACACAAAACCAAGGTGATCTCACCTTATCTCTA------------GGGA-AAAGGGCAGAAAGGAAATTGCAAAAATTATGTTTGTTGGAAAGTATAAACAATATTCCTTTGTGTCAACTTAAT--AAAAAATGAGGCCCTCTCGGGGCCTGGGGTGAACTCCGGGCTGCTGACATCCCACGTGAA-GCGGCTC----CCAGTC-CTGTTGGCTCCTCCTACGGGCAACAGGGGTTGTCGATAACCAGCATGACATCAATGCCATAGGCCTCCAGCAGGTCCAGGAGAAAGCTCCGGTCTCCTTGGGGGTCTAGGCCCATGCCCCGGGCATGCTCTGCTGTCAGAGTTTTGTCTTGACTGGCAGACACCTCCAACAAAGTCTGAAATATCCGGTTGTTTTGTTCTAGGAAAAACCTGCATTTGGAAGACAAGACACAGGAAAGGAAGGAGGGGG--------------------GAATAAAAAGCTCA-CCAGATAATCCACATATGGGGAACCAAAACTATACTGTTTTGTTTAATGTACTTTTCAGTGGATTCG----CAGGTATCTTTT--AAAAGAA-----GAAA--AGAGTAAAAGTT----AATTATTCAAGTGCTACTAAGG-TTAGCAAAGAAACCATTTGGCATTAATTATGGTGTGATTAGGGAAATCTCTAAGCAAG--ATGGCCTGTC-----AAAAT-------------------------------CCATTTTCCTGTT----------------------------GAGGGAAGTGACCTGGGTTTAA--ACAG--CCTGAGAAGAGGCCCCCAAACACTGCTTT-----TCTCTCTTTCTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138933095 1080 + 157549271 TTTTTTCCCCTCTTTGTGGTCCCTACTCAAGTAAACAGAGAAGACATAAAGTTGCCCTAATGAACAAGAAAAGGGATTTGATCCCaagaccatagactcctagaactactaaaaaccttaaaagatcatctggtctagtt--tctgcctttaggcagatgaacatc-taaggccaca-gaggacagatggttgtcttattctcaaatacatcaaggg---ac-aaagaccacacagactttctgaacagtccgtcccaatgtttccagagctcAGCCTACTCCTAGTGATA---------------------------------------------------CAACCCCTATGACCAAGCCCAAAGGACCAGCAGTTCTGGGAGAAAGTGGCAGATTCCAATATCCTAACACGGCAGGACACAAAACCAAGGCGATCTCACCTTATCTCTA------------GGGA-AAAGGGCAGAAAGGAAATTGCAAAAGTTATGTTTGTTGGAAAGTATAAACAATATTCCTTTGTGTCAACTTAAT--AAAAAATGAGGCCCTCTGGGGGCCTGGGGTGAACTCCAGGCTGCTGACATCCCACATGAA-GCGGCTC----CCAGTC-CTGTTGGCTCCTCCTACGGGCAACAGGGGTTGTCGATGACCAGCATGACATCAATGCCATAGGCCTCCAGCAGGTCCAGGAGAAAGCTCCGGTCGCCTTGGGGGTCTAGGCCCATGCCCCGGGCATGCTCTGCTGTCAGAGTTTTGTCTTGACTGGCAGACACCTCCAACAAAGTCTGAAATATCCGGTTGTTTTGTTCTAGGAAAAACCTGCATTTGGAAGACAAGACACAGGAAAGGAAGGGGAGGA------------------------AAAAAGCTCA-CCAGGTAATCCACATATGGGGAACCAAAACTATACTGTTTTGTTTAATGTACTTTTCAGTGGATTCG----CAGGTATCTTTT--AAAAGAA-----GAAA--AGAGTAAAAGTTA---AATTATTCAAGCGCCACTAAGG-TTAGCAAAGAAATCATTTGGCATTAATTATGGTGTGATTAGGGGAGATCTCAAGCAAG--ATGGCCTGTC-----AAAAT-------------------------------CCATTTTCCTGTT----------------------------GAGGGAAGTGACCGGGGTTTAAACACAG--CCTGAGAAGAGGCCCCCAAACACTGCTTT-------TCTCTTTCTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93070333 1083 + 110113093 TTTTTT-CCCTCTTTATGGTCCCTACTCAAGTAAACAGAGAAGACATAAAGTTGCCCTAATGAACAAGAAAAGGGATTTGATCCCAAGACTAcagactcctagaactactaaaaactttaaaagatcatctggtctagtt--tctgcctttaggaagatgaacatc-taaggccaca-ggggacagatggttgtcttattcttaaatacatcaaggg---ac-aaagaccacaaagactttctgaaaagtccatcccagtgtttCCAGAGCTCAGCCTACTCCTAGTGATA---------------------------------------------------CAACTCCCATGACGAAGCCCAAAGGACCAGCAGCTCTGGGAGAAAGTGGCAGATTCCAATATCCTAACACAGCAGGACACAAAACCAAGGCGATCTCACCTTATCTCTA------------GGGA-AAAGGGCAGAAAGGAAATTGCAAAAATTATGTTTGTTGGAAAGTATAAACAATATTCCTTTGTGTCAACTTAAT--AAAAAATGAGGCCCTCTGGGGGTCTGGGGTGAACTCCAGGCTGCTGACATCCCATGTGAA-GCGGCTC----CCAGTC-CTGTTGGCTCCTCCTACGGGCAACAGGGGTTGTCGATGACCAGCATGACATCAATGCCATAGGCCTCCAGCAGGTCCAGGAGAAAGCTCCGGTCTCCTTGGGGGTCTAGGCCCATGCCCCGGGCATGCTCTGCTGTCAGAGTTTTGTCCTGACTGGCAGACACCTCCAACAAAGTCTGAAATATCCGGTTGTTTTGTTCTAGGAAAAACCTGCATTTGGAAGACAAGACACAGGAAAGGAAGCGGGGGG--------------------GAA-ATAAAGCTCA-CCAGGTAATCCACATATGGGGAACCAAAACTATACTGTTTTGTTTAATGTACTTTTCAGTGGATTCG----CAGGTATCTTTT--AAAAGAA-----GAAA--AGAGTAAAAGTTAAACAATTATTCAAGTGCCACTAAGG-TTAGCAAAGAAACCATTTGGCATTAATTATGGTGTGATTAGGGAAATCTCTAAGCAGG--ATGGCCTGTC-----AAAAT-------------------------------CCATTTTCCTGTT----------------------------GAGGGAAGTGACCGGGGTTTAAACACAG--CCTGAGAAGAGGCCCCCACACACTGCT---------TATCTTTCTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180968810 1073 + 198365852 TTTTTT-CCTTCTTTGTGGTCCTTACTCAAGTAAACAGAGAAGACATAAAGTTGCCCCAGTGAACAAGAAAAGGGATTTGATCCCA-------Agactcctagagctactaaaaactttaaaagatcatccagtttagtt--tctgcctttaggcagatgaacatcttaaggccaca-ggggacagatggttgtcttattctcaaatacgtcaaggg---ac-aaagaccgcacaaactttctgaacagtccatcccaatatttCCAGAGCTCAGCCCACTCCTAGTGATA---------------------------------------------------CAACTCCTATGACCAAGCCCAAAGGACCAGCAGCTCTGGGAGAAAGTGGCAGATTCCAATATCCTAACATGGCAGGACACTAAACCAAGGCGATCTCACCTTATCTCTA------------GGGA-AAAGGGCAGAAAGGAAATTGCAAAAATTATGTTTGTTGGAAAGTATAAACAATATTCCTTCGTGTCAACTTAAT--AAAAAATGAGGCCCTCTGGGGGCCTGGGGTGAACTCCAGGCTGCTGACATCCCACATGAA-GCGGCTC----CCAGTC-CTGTTGGCTCCTCCTACGGGCAACAGGGGTTGTCGATGACTAGCATGACATCAATGCCATAGGCCTCTAGCAGGTCCAGGAGAAAGCTCCGGTCTCCTTGGGGGTCTAGGCCCATGCCCCGGGCATGCTCTGCTGTCAGAGTTTTGTCTTGACTGGCAGACACCTCCAACAAAGTCTGAAATATCCGGTTGTTTTGTTCTAGGAAAAATCTGCATTTAGAAGACAAGACACAGGAAAGGAAGGGGGAA----------------------AA-AAAAAACTCA-CTAGATAATCCACATATGGGGAACCAAAACTATACTG--TTGTTTAATGTACTTTTCAGTGGATTCG----CAGGTATCTT----AAAACAA-----GAAA--AGAGTAAAAGTTAAACAATTATTCAAGTGCTACTAAAG-TTAGCAAAGAAACCTTTTGGCATTAATTATGGTGTGATTAGGGAAATCTCTAAACAAG--ATGGCCTGTC-----AAAAT-------------------------------CCATTTTCCTGTT----------------------------GAGGGAAGTGACCGGGGTTTAAACACAG--CCTGAGAAGAGGCCCCCACACACTGCTTT-------TCTCTTTCTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174714538 1073 + 192294377 TTTTTT-CCTTCTTTGTGGTCCCTACTCAAGTAAACAGAGAAGACATAAAGTTGCCCCAGTGAACAAGAAAAGGGATTTGATCCCA-------Agactcctagagctactaaaaactttaaaagatcatccagtttagtt--tctgcctttaggcagatgaacatcttaaggccaca-ggggacagatggttgtcttattctcaaatacgtcaaggg---ac-aaagaccgcacaaactttctgaacagtccatcccaatatttCCAGAGCTCAGCCCACTCCTAGTGATA---------------------------------------------------CAACTCCTATGACCAAGCCCAAAGGACCAGCAGCTCTGGGAGAAAGTGGCAGATTCCAATATCCTAACATGGCAGGACACTAAACCAAGGCGATCTCACCTTATCTCTA------------GGGA-AAAGGGCAGAAAGGAAATTGCAAAAATTATGTTTGTTGGAAAGTATAAACAATATTCCTTCGTGTCAACTTAAT--AAAAAATGAGGCCCTCTGGGGGCCTGGGGTGAACTCCAGGCTGCTGACATCCCACATGAA-GCGGCTC----CCAGTC-CTGTTGGCTCCTCCTACGGGCAACAGGGGTTGTCGATGACTAGCATGACATCAATGCCATAGGCCTCTAGCAGGTCCAGGAGAAAGCTCCGGTCTCCTTGAGGGTCTAGGCCCATGCCCCGGGCATGCTCTGCTGTCAGAGTTTTGTCTTGACTGGCAGACACCTCCAACAAAGTCTGAAATATCCGGTTGTTTTGTTCTAGGAAAAATCTGCATTTAGAAGACAAGACACAGGAAAGGAAGGGGGAA----------------------AA-AAAAAACTCA-CTAGATAATCCACATATGGGGAACCAAAACTATACTG--TTGTTTAATGTACTTTTCAGTGGATTCG----CAGGTATCTT----AAAACAA-----GAAA--AGAGTAAAAGTTAAACAATTATTCAAGTGCTACTAAAG-TTAGCAAAGAAACCTTTTGGCATTAATTATGGTGTGATTAGGGAAATCTCTAAACAAG--ATGGCCTGTC-----AAAAT-------------------------------CCATTTTCCTGTT----------------------------GAGGGAAGTGACCGGGGTTTAAACACAG--CCTGAGAAGAGGCCCCCACACACTGCTTT-------TCTCTTTCTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163379666 1069 + 180432695 tttttt-ccttctttgtggtCCCTACTCAAGTAAACAGAGAAGACATAAAGTTGCCCCAGTGAACAAGAAAAGGGATTTGATCCCA-------AGACTCCTAGAGCtactaaaaactttaaaagatcaTCCGGTCTAGTT--TCTGCCTTTAGGCAGATGAACATCTTAAGGCCACA-GGGGACAGATGGTTGTCTTATTCTCAAATACGTCAAGGG---AC-AAAGACCGCACAAACTTTCTGAACAGTCCATCCCAATATTTCCAGAGCTCAGCCCACTCCTAGTGATA---------------------------------------------------CAACTCCTATGACCAAGCCCAAAGGACCAGCAGCTCTGGGAGAAAGTGGCAGATTCCAATATCCTAACATGGCAGGACACTAAACCAAGGCGATCTCACCTTATCTCTA------------GGGA-AAAGGGCAGaaaggaaa-tgcaaaaattatgttTGTTGGAAAGTATAAACAATATTCCTTCGTGTCAACTTAAT--AAAAAATGAGGCCCTCTGGGGGCCTGGGGTGAACTCCAGGCTGCTGACATCCCACATGAA-GCGGCTC----CCGGTC-CTGTTGGCTCCTCCTACGGGCAACAGGGGTTGTCGATGACTAGCATGACATCAATGCCATAGGCCTCCAGCAGGTCCAGGAGAAAGCTCCGGTCTCCTTGGGGGTCTAGGCCCATGCCCCGGGCATGCTCTGCTGTCAGAGTTTTGTCTTGACTGGCAGACACCTCCAACAAAGTCTGAAATATCCGGTTGTTTTGTTCTAGGAAAAATCTGCATTTAGAAGACAAGACacaggaaaggaagggg-------------------------aa-aaaaaactca-CTAGATAATCCACATATGGGGAACCAAAACTATACTG--TTGTTTAATGTACTTTTCAGTGGATTCG----CAGGTatctt----aaaacaa-----gaaa--agagtaAAAGTTAAACAATTATTCAAGTGCTACTAAAG-TTAGCAAAGAAACCATTTGGCATTAATTATGGTGTGATTAGGGAAATCTCTAAACAAG--ATGGCCTGTC-----AAAAT-------------------------------CCATTTTCCTGTT----------------------------GAGGGAAGTGACCGGGGTTTAAACACAG--CCTGAGAAGAGGCCCCCACacactgcttt-------tctctttctg
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110412097 1067 + 127223203 TTTTTT-CCTTCTTTGTGGTCCCTACTCAAGTAAACAGAGAAGACATCAAGTTGCCCCAGTGAACAAGAAAAGGGATTTGATCCCA-------Agactcctagagctactaaaaactttaaaagatcatcgggtctagtt--tctgcctttaagcagatgaacatcttaaggccaca-ggggacagatggttgtcttattctcaaatacgtcaaggg---ac-aaagaccgcacaaactttctgaacagtccatcccaacatttCCAGAGCTCAGCCCACTCCTAGTGATA---------------------------------------------------CAACTCCTATGACCAAGCCCAAAGGACCAGCAGCTCTGGGAGAAAGTGGCAGATTCCAATATCCTAACATGGCAGGACACTAAACCAAGGCGATCTCACCTTATCTCTA------------GGGA-AAAGGGCAGAAAGGAAACTGCAAAAATTATGTTTGTTGGAAAGTATAAACAATATTCCTTCGTGTCAACTTAAT--AAAAAATGAGGCCCTCTGGGGGCCTGGGGTGAACTCCAGGCTGCTGACATCCCACATGAA-GCGGCTC----CCAGTC-CTGTTGGCTCCTCCTACGGGCAACAGGGGTTGTCGATGACTAGCATGACATCAATGCCATAGGCCTCCAGCAGGTCCAGGAGAAAGCTCCGGTCTCCTTGGGGGTCTAGGCCCATGCCCCGGGCATGCTCTGCTGTCAGAGTTTTGTCTTGACTGGCAGACACCTCCAACAAAGTCTGAAATATCCGGTTGTTTTGTTCTAGGAAAAATCTGCATTTAGAAGACAAGACACAGGAAAGGAAGGGGGA-----------------------AA-AAAAAACTCA-CTAGATAGTCCACATATGGGGAACCAAAACTATACTG--TTGTTTAATGTACTTTTCAGTGGATTCG----CAGGTATCTT---------AA-----GAAA--AGAGTAAAAGTTAAACAATTATTCAAGTGCTACTAAAG-TTAGCAAAGAAACCATTTGGCATTAATTATGGTGTGATTAGGGAAATCTCTAAACAAG--ATGGCCTGTC-----AAAAT-------------------------------CCATTTTCCTGTT----------------------------GAGGGAAGTGACCGGGGTTTAAACACAG--CCTGAGAAGAGGCCCCCACACACTGCTTT-------TCTCTTTCTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23758831 1079 - 128169293 TTTTGT-CTCTCTGTGTGGTCCCTATTCAAGTAAACAGAGAAGATATTGAGTTGCCCTAATGAACAAGAAAAGGGATTTGATCCCaaaaccatagacttctagaattactaaaaaccttaaaagatcatctggtctagtt--tctgcctttagacagatgaacacc-taaggccaca-tgggacagatggttgtcttattctcgaatacatcgaggg---ac-aaagacaacacagactttctgaagagtccatcccaatgtttCCAGAGCTCAGCCCACTCCCAGTGATA---------------------------------------------------CAAAT---ATGACCAAACCCAAAGGACCAGCAGCTCTGGGAGAAAGTGGCAGATTCCAACATCCTAGCATGGCAGGACACAAAACCAAGGCAATCTCACCTTACCTCTA------------GGGA-AAAGGGCAGAAAGGAAATTGCAAAAATTATGTTTGTTGGAAAGTATAAACAATATTCCTTTGTGTCAACTTAATAAAAAAAATGAGGCCCTCTGGGGGCCTGGGGTGAACTCCAGGCTGCTCACATCCCACGTGAG-GCGGCTC----CCAGTC-CTGTCGGCTCCTCCTACGGGCAACAGGGGTTGTCAATAACCAGCATGACGTCAATGCCATAGGCCTCCAGCAGGTCCAGGAGAAAGCTCCGGTCTCCTTGGGGGTCTAGACCCATGCCCCGGGCATGCTCTGCTGTCAGAGTTTTGTCTTGACTGGCAGACACCTCCAACAAAGTCTGAAATATCCGGTTGTTTTGTTCTAGGAAAAACCTGCATTTAGAAGACAAGACACAGGAAAGGAAGGGGA------------------------AA-AAAAAGCTCA-CCAGATAATCCACTTATGAGGAACCAAAACTACACTG--T--TTTAATATACTTTTCAGTGGATTCA----AAGGTATCTTCT--AAAAGAA-----GAAAAGAGAGTAAAAGTT----AATTATTCAAGTGCTACTAACGTTTAGCAAAGAAACCATTTGTCATTAATTATGGTGTCATCAGGGAAATCTCTGAGCAAG--ACGGCCTGTC----AAAAAT-------------------------------CCATTTTCCTGTTA--------------------------AGAGGGAAGTGACCGGGGTTTAAACACAG--CCAGGGTAGAAGCCCCCACACTCTGCTTT-----T-TCTCTTTCTG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40406214  996 + 149736546 TTCTTT-CCTCCTTTGTGGTCC---CTCCATCGAACAGAGAAGGTTCAGACTTGCCCTCT----CACGACTAGG----CGATCCTAACT----TGACTCCTTGAACTTGG-------TGGAAAGATCATCTAAT-TAGTT--TCTGTCTTTAAGCAGATGAACATC-TAAGGCCATACGGGGACACATAGTTATCTTATTTTCATATGCAACAAAGGCAAAC-GAAGAC-ATACAGGTTTTCTGAACAGTTCATCCCAGAGT-------------CTGACTCTGACTCACA---------------------------------------------------GAACTCCTAAGACTAAACCCAAAGAAGCAGCAG---TGGATGACAGT---AGATTCCCACGTCCAACCA----AAGGCTACAAGCCCAGGCAGCCTCACCCCAGCTCCATCCCAGCCCCAGGGCT-GAGGCTCAGAAAGAAAATGGCAAAAGTTTCATGTGTTGGAAAGTATAAACAG---TCCTTTGTGTCAACTTAAT--TAAAACTGAAG-CTGCTGAGGGCCTGGGGTGCACTCCAGGCTCCTGTCACCCTACACGAGTGAGTCTCACCACCAGTC-CTATC-ATGCTTCCTAAGGACAACAGGGGTTGTCAATGACCAGCATGACGTCGATGCCGTAGGCCTCCAGCAGGTCCATGAGAAAGCTCCTGTCTCCCTGGGGATCCAGTCCCATGCCTCGGGCATGCTCCGCTGTTAGAGTTTTATCTTGGCTGGCTGACACCTCCAACAGAGTCTGAAAAATCCGGTTGTTCTGCTCTAGGAAAAACCTGCATTTCCAAGACAGGA------AAAGGAAG----------------------------AC-AAGAAGCTCATCTAGATAACCCAAACAAGCAGAGCCCCGTCTGCGC----TTGGGTAGTGTGCTTTTACAAGCCTTCC----AAA----CTT----GTAACAATTTTTAAGA--GGATTAAAAACT-----GCTATT--AGTGTGAATGAGG-CCAGCAAGGAAGACACACAGCAAGAATTGTAGTGT------------CTCTATGGATG--AGGGCCTGAC-----TG----------------------------------CTGTCTTCCTGCT----------------------------------------------TTAAGCATAGCCCCTTGGAGAGGTTCCATAGACAATGTC---------ACTCCCTCTG
i mm10.chr6                I 68 I 449
s canFam3.chr16             52078876 1196 -  59632846 TTTTGT-TCCTCTTCGAGGGCTCTACTCACATGAACAGAGAAGACGCAGATCTGCCCTACTGAACAGGAGAAAGGATCTGACCTCAACACT--ggactcccagaacagataaaaaccctgaagggtcaggaggtctagct--tccaccttcagg-aggtgcacatc-caaggccact-ccggaca----gttctctcagtctcgagtacctcaaggg---atggaaaatcatagagactttctcaacagtcca-cccagtatttCCAGAGCTCGGCCCGCTCCTAGTGATATATGGCCTCCACCACATTCCCTCAAGTCACTCAATATGGAGAGGAAAGACTCAGCTCTGACAACCAAACC---AGG--CAGCAGTTCTGGGAGAAAGTGGTAGATTCCAACATCGTACCAAAGCAGGACGCAAAACCAAGGTGGTCTCGTCTCACCACTA------------GGGAGGAAGGGAAGAAAGGAGATTGCAAAAATCACATTTGTTGGAAAGTATAAACCATAATCCTTTGCATCAACTTAAT--AAAAAATGAGGTCTTCT-GGGGCCCAGTGTGAAATC--------------CCCAGGTGAGAGCGGCTC---ACCAGCCTCGGCTCACTCTTCCTACGGGCAACAGGGGTTGTCAATGACCAACATGACGTCGATGCCATAGGCCTCCAGCAGGTCCATCAGAAAGCTCCGGTCTCCTTGGGGGTCTAGACCCATGCCGCGGGCATGCTCAGCGGTCAGAGTTTTATCTTGACTGGCAGACACCTCCAACAAAGTCTGAAATATCCGGTTGTTTTGCTCTAGGAAAAACCTGCATTC-----ACAAGACACAGGGAAGGGGGAGGGGGGTGGGGTGCCAGAGGGCAGAAAAA-AAAAAAGTCA-TCAAATAATCCACACACAAAAAACCAAAACTACGT----CCCTTTAATATGCTTTCAAATGGTTTCAAAACCAGAAACCTTTCTGAAAATAA-----GGAAATAGGATCAAAGTTCAAGGGTTATTAAACTAATACCCAGT-TTAGCAAAA----CTATGGACATTAATCA-AGCATGATTAGCAAAGTCTCTGAACGAGCAACGGCCTGCCTGCCAAAGACCAGCCTTCCTGCGTTAAGGTTACTATACATACCATGTTCCCATTCGTGGTGTTCCTCCGTTTCTCAGTCATAAGGGGAAGAGAAAGAAA---AAACAAAA--CC-AAGAAAACCCCCCCAAACCCAACCCTGATAATGTAGTTCTCTG
i canFam3.chr16            C 0 I 9

a score=157764.000000
s hg38.chr7_GL383534v2_alt     29776  59 +    119183 CTTAGTCATAGGAGGAAGCAAAAATT-------------------------------CAACAACAACAACAAAATG---------------------------------------AACGTGAGCCAACG
s panTro4.chr7             143130022  59 + 161824586 CTTAGTCATAGGAGGAAGCAAAAATT-------------------------------CAACAACAACAACAAAATG---------------------------------------AACGTGAGCCAACG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138934175  62 + 157549271 CTTAGTCATAGGAGGAAGTAAAAATT-----------------CAA-----------CAACAACAACAACAAAATG---------------------------------------AACCTGAGCCAACG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93071416  56 + 110113093 CTTAGTCCTAGGAGGAAGCAAAAATT----------------------------------CAACAACAACAAAATG---------------------------------------AACCTGAGCCAACG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180969883  59 + 198365852 CTTAGTCATAGGAGGAAGCAAAAATT-------------------------------CAACAACACCAACAAAATG---------------------------------------AACATGAGCCAACA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174715611  59 + 192294377 CTTAGTCATAGGAGGAAGCAAAAATT-------------------------------CAACAACACCAACAAAATG---------------------------------------AACATGAGCCAACA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163380735  59 + 180432695 ctcagTCATAGGAGGAAGCAAAAATT-------------------------------CAACACCACCAACAAAATG---------------------------------------AACATGAGCCAACA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110413164  59 + 127223203 CTTAGTCATAGGAGGAAGCAAAAATT-------------------------------CAACACCACCAACAAAATG---------------------------------------AACATGAGCCAACA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23759910  59 - 128169293 CTTAGTCATAAGAGGAAGTGAAAATT-------------------------------CAACAATAACAACAAAATG---------------------------------------AACCTGAGCCAACG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52080081 126 -  59632846 CTTA---ATATGAGAAACTAAAATTCACCTTCAGAGTCCCGGCCAGGCCACTGGAGCCAGCAGCAGGGGCAAGCTTTTGTGGGGACAGAGCAGGGCCCTGAAGCCAACTGCCCCCAGCCTGAGCCACCG
i canFam3.chr16            I 9 I 122
e mm10.chr6                 40407210 449 + 149736546 I

a score=841441.000000
s hg38.chr7_GL383534v2_alt     29835 281 +    119183 TTACCCTTGGGTGTTTGCTCT-CCCTTGATGA---------------------CTCTTTGGG--------AGGAGTGAGATTATGCACAGATCAAGATTTAAAAGTCACTGCTTTAGAGTGCTTTATGAACAAACAAGCTCTGTTCAGGACAG-------GGTTCACTGCCTAGTTAGACTAGACAGTCCAGCC---CCATACAGCTCTCAGGT-TGGCAAA-GTGCCTGGTGCCTGAAGCGGCCCTCGGTGCTCAGGAATTTCAG----ACACAGTGGCACATGTCATACCTGGATGAGACTATGGCTGTGCTCAAGTCTCAGATA
s panTro4.chr7             143130081 281 + 161824586 TTACCCTTGGGTGTTTGCTCT-CCCTTGATGA---------------------CTCTTTGGG--------AGGAGTGAGATTATGCACAGATCAAGATTTAAAAGTCACCGCTTTAGAGTGCTTTATGAACAAACAAGCCCTGTTCAGGACAG-------CGTTCACTGTCTAGTTAGACTAGACAGTCCAGCC---CCATACAGCTCTCAGGT-CGGCAAA-GTGCCTGGTGCCTGAGGCGGCCCTGGGTGCTCAGGAATTTCAG----ACACAGTGGCACATGTCATACCTGGATGAGACTGTGGCTGTGCTCAAGTCTCAGATA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138934237 288 + 157549271 ATACCCTTGGGTGTTTGCTCT-CCCTTGATGA---------------------CTCTTTGGG--------AGGAGTGAGATTATGCATAGATCAAGATTTAAAAGTCACCGCTTTAGAGTGCTTTATGAACAAACAAGCCCCGTTCAGAACAAGCAAGCCCCGTCAGTCTAAAGTTGGACTAGACAGTCCAGCC---CCATACAGCTCTCAGGT-CAGCAAA-GTGCCTGGTGCCTGAAGCGGCCCTGGGTACTCAGGAATTTCAG----ACACAGTGGCACATGTCATACCTGGATGAGACTGTGGCTGTGCTCAAGTCTCAGATA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93071472 256 + 110113093 TTACCCTTGGGTGTTTGCTCT-CCCTTGATGA---------------------CTCTGTGGG--------AGGAGTGAGATTATGCACAGATCAAGATTTAAAACTCACTGCTTTAGAGTGCTTTATGAACAAACAAGCCCCGTTCAGGACAG--------------------------------AGTCCAGGC---CCATACAGCTCTCAGGT-CGGCAAA-GTGCCTGGTGCCTGTAGCGGCCCTGGGTGCTCAGGAATTTCAG----ACACAGTGGCACATGTCATACCTGGATGAGACTGTGGCTGTGCTCAAGTCTCACATA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180969942 277 + 198365852 TTACCCTTGGGTGTTTGCTCT-CCCTTGATGA---------------------CTCTTTGGG--------AGGAGTGAG---ATGCACAGATCAAGATTTAAAAGTCACTGCTTTAGAGTGCTTTATGAACAAACAAGCCCCGTTCAGGGCAG-------CGCTCACTGTCTAGTTAGACTAGACAGTCCAGCC---CCATACAGCTCTCAGGT-CTGCAAA-GTGCCCGGTACCTGAAGTGGCCTTGGGTGCTCAGGAATTTCAG----ACACAGTGGTACATGTCATA-CTGGATGAGACTGTGGCTGTGCTCAAGTCTCAGATA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174715670 277 + 192294377 TTACCCTTGGGTGTTTGCTCT-CCCTTGATGA---------------------CTCTTTGGG--------AGGAGTGAG---ATGCACAGATCAAGATTTAAAAGTCACTGCTTTAGAGTGCTTTATGAACAAACAAGCCCCGTTCAGGGCAG-------CGCTCACTGTCTAGTTAGACTAGACAGTCCAGCC---CCATACAGCTCTCAGGT-CTGCAAA-GTGCCCGGTACCTGAAGTGGCCCTGGGTGCTCAGGAATTTCAG----ACACAGTGGTACATGTCATA-CTGGATGAGACTGTGGCTGTGCTCAAGTCTCAGATA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163380794 277 + 180432695 TTACCCTTGGGTGTTTGCTCT-CCCTTGATGA---------------------CTCTTTGGG--------AGGAGTGAG---ATGCACAGATCAAGATTTAAAAGTCACTGCTTTAGAGTGCTTTATGAACAAACAAGCCCTGTTCAGGACAG-------CGCTCACTGTCTAGTTAGACTAGACAGTCCAGCC---CCATACAGCTCTCAGGT-CTGCAAA-GTGCCCGGTACCTGAAGTGGCCCTGGGTGCTCAGGAATTTCAG----ACACAGTGGTACATGTCATA-CTGGATGAGACTGTGGCTGTGCTCAAGCCTCAGATA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110413223 277 + 127223203 TTACCCTTGGGTGTTTGCTCT-CCCTTGATGA---------------------CTCTTTGGG--------AGGAGTGAG---ATGCACAGATCAAGATTTAAAAGTCACTGCTTTAGAGTGCTTTATGAACAAACAAGCCCCGTTCAGGACAG-------CGCTCACTGTCTAGTTAGACTAGACAGTCCAGCC---CCATACAGCTCTCAGGT-CTGCAAA-GTGCCCGGTACCTGAAGTGGCCCTGGGTGCTCAGGAATTTCAG----ACACAGTGGTACATGTCATA-CTGGATGAGACTGTGGCTGTGCTCAAGCCTCAGATA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23759969 280 - 128169293 TTATCCTTGGGTGTTTGCTCTCCCCTTGATGA---------------------CTCTTTGGG--------AGGAGTGAGGTTACGCACAGATCAAGATTTAAAAGCCATGGCTTTAGAGTGCTCTATGAACAAGCAAGCCCTTTTCAGGACAG-------CATTCACCGACTAGTTAGACTAGACGGTCCAGTC---CCCTACAGCTCTCAGGT-CAGCAAA-GGGCCCGGGGCCTGAAGCAGTCCTGGCTGCTCAGGAATTTCAG----ACACAATGGCACATGTCATGCCTGGATGAGACTGTGGCTGTGCTC--GTCTCAGATA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52080329 284 -  59632846 TTATCCTTGGGTATTTGTTTT-CCTTTGATTAGCCttttttttttttttttttttttttGGGTGGTGGTTGGGGGACAGATGATACACAGAACATGATTTAA----------TTTACAGTAGGTACT--ACAGAAGAGTCATATTGAGGAAAG------GCATGAACTGTCT-------CTCAACTTTTTAGCCATACTCCACAGGGCTCAGTCGCAGCAAAGGCACCCGGTGCCCGAAGCAGCTCTAAATGCCCAGGAATTTCAGAGACAGACAGTGGGGGGTGTCAGACCTTGCCCAGGCCGCGG----GCT-------------
i canFam3.chr16            I 122 C 0
e mm10.chr6                 40407210 449 + 149736546 I

a score=3158419.000000
s hg38.chr7_GL383534v2_alt     30116  990 +    119183 ---CTTTCCACCTAAACAGGATGTAGGTTTTA-GAAG----TCCACTATTAGAATCAAGGTGCTACACCTTTGTAGAAATGCCCACA-TTAAG-----------------------TTTTCAGCATC-----------------AAACCA--------------CAA--------------CCTCACCCC-----------TGGAAGACCAAACAGGAAGCTGGGAGAATTCAGTTGATGCCACA-------------------------------------GAAGGCTACTTCACCCAG------CTGTCTAGGAATGAAATCAGTACTGTGAGGTGGAAAGGCCC------TGGCTTCTGCACCTACGGGGCAAAGAGATTTCATTTGATTCAAGAATTAAAATTTCAGA-TTATCCCATAATATTCAGCGCAAGGA--ACTACTCTATTCAAAGGAGGCAATGGAAATGAGAAGTCCCTGAGTCCTGAGGGACAGACAGAGCTTCCAGGCAGTGGACATCCTCGATGTAAAAGCCCAACAAGGAAAGAAACACTAAGACTCCTGTTTTCTCTTAAGGGACCTGCTTCTTTCCCTAAGTCTTCTGG----------------------------------------------------------GTTCCCCCT-------------------AATGGCATTTCAGGGCTCAGGTTTGCCTCTGTAAGGAGCCCGGCTCTAAGTGCCCTTGGCAGCAATAAACGGCATCCCTGGCCCGCAGTGAATGACATGGGAGGGATGCAGGTCACTC---------AGTGCCGAAGGGATCCTCAGGGAGACTCCACATCCACGGCCCCAG--GACTCACAGCACGAAGAGGTCCTCTTCACAAGGGTTGTAGTCTTCTTCTACTTCCTGGGAGTACAACAGCATCTGCCTGTTGGGA---AGATCACCG-TGAGACTCTGGTGCAGGTACCAGGAC----------CGCAGTCACAGGTGAGGCCTCAGC--CAG--------------GCATCTTCAATGGGCCACCACCTCCCAGGAAGCAGCACC-----------------------AGCCAGGAAAGGGATCAacagggtttggactcaaaatccctggggtccagggccagttctgcccctggtaatc------------ttaggcaagtaacaatc--tccta--------------------gttgtctatcagaaggggat-------------------gatgatg----------atgatgatactt-atttcacaggatcaccagattattgacaat
s panTro4.chr7             143130362  991 + 161824586 ---CTTTCCACCTAAACAGGATGTAGGTTTTAGGAAG----TCCACTATTAGAATCAAGGTGCTACACTTTTGTAGAAATGCCCACA-TTAAG-----------------------TTTTCAACATC-----------------AAACCA--------------CAA--------------CCTCACCCC-----------TGGAAGACCAAAAAGGAAGCTGGGATAATTCAGTTGATGCCACA-------------------------------------GAAGGCTACTTCACCCAG------CTGTCTAGGAATGAAATCAGTACTGTGAGGTGGAAAGGCCC------TGGCTTCTGCACCTACGGGGCAAAGAGATTTCATTTGATTCAAGAATTAAAATTTCAGA-TTATCCCATAATATTCAGCGCAAGGA--ACTACTCTATTCAAAGGAGGCAATGGAAATGAGAAGTCCCTGAGTCCTGAGGGACAGACAGAGCTTCCAGGCGGTGGACATCCTCGATGTAAAAGCCCAACAAGGAAAGAAACACTAAGACTCCTGTTTTCTCTTAAGGGCCCTGCTTCTTTCCCTAAGTCCTCTGG----------------------------------------------------------GTTCCCCCT-------------------AATGGCATTTCAGGGCTCAGGTTCGCCTCTGTAAGGAGCCCGGCTCTAAGTGCCCTTGGCAGCAATAAACAGCATCCCTGGCCCGCAGTGAATGACATGGGAGGGATGCAGTTCACTC---------AGTGCCGAAGGGATCCTCAGGGAGACTCCACATCCACGGCCCCAG--GACTCACAGCACGAAGAGGTCCTCTTCACAAGGGTTGTAGTCTTCTTCTACTTCCTGGGAGTACAACAGCATCTGCCTGTTGGGA---AGATCACCG-TGAGACTCTGGTGCAGGTACCAGGAC----------CACAGTCACAGGTGAGGCCTCAGC--CAG--------------GCATCTTCAATGGGCCACCACCTCCCAGGAAGCAGCACC-----------------------AGCCAGAAAAGGGATCAacagggtttggactcaaaatccctggggtccagggccagttctgcccctggtaatc------------ttaggcaagtaacaatc--tccta--------------------gttgtctatcagaagggcat-------------------gatgatg----------atgataatactt-atttcataggatcaccagattattgacaat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138934525  984 + 157549271 ---CCTTCCACCTCAACAGGATGTAGGTTTTAGGAAG----TTCTCTATTAGAATCAAGGTGCTGCACCTTTGTAGAAATGCCCATA-TTAAG-----------------------TTTTCAACATC-----------------AAACCA--------------CAA--------------CCTCATCCC-----------TGGAAGACCAAACAGGAAGCTGGGAGAATTCAGTTGATGCCACA-------------------------------------GAAGGCTACTTCACCCAG------CTGTCTAGGAATGAAATCAGTGCTGTGAGGTGGAAAGGCCC------TGGCTCCTGCACCTACGGGGCAAAGAGATTTCATTTGATTCAAGAATTAAAATTTCAGA-TTATCCCTTAATATTCAGTGCAAGGA--ACTACTCTATTCAAAGGAGGCAATGGAAATGAGGAGTCCCTGAGTCCTGAGGGACAGACAGACCTTCCATGTGGTAGACGTCCTCAGTGTAAAAGCCCAAC---------------AAGACTCCTGTTTTCTCTTAAGGGTCCTGCTTCTTTCCCTAAGTCCTCTGG----------------------------------------------------------GTTCCCCCT-------------------AATGGCATTTCAGGGCTCAGGTCTGCCTCTGTAAGGAGCCCGGCTCTAAGTGCCCTTGGCAGCAATAAAGGGCATCCCTGGCCCGCAGTGAGTGACATCGGAGGGATGCAGGTCACTC-----AGTTAGTACCGAAGGGAT-CTCAGGGAGACCCCACGCCCACGGCCCCAG--GACTCACAGCACAAAGAGGTCCTCTTCACAAGGGTTGTAGTCTTCTTCTACTTCCTGGGAATACAACAGCATCTGCCTGTTGGGAAGGAGATCACCG-TGAGACTCTGGTACAGGTACCAGGAC----------CCCAGTCACAGGTGAGGCCTCAGC--CAG--------------GCATCTTCAATGGGCCACCACCTCCcaggaagcagcacc-----------------------agccagaaaagggatcaacagggtttggactcaaaatccctggggtccagggccagttctgcccctggtaatc------------tcaggcaagtagcaatctttccta--------------------gttgtgtatcagaagcggat-------------------gatgatg----------atgataacattt-atttcacaggatcaccagattattgagaat
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93071728  997 + 110113093 ---CCTTCCACCTAAACAGGATGTAGGTTTTAGGAAG----TCCACTATTAGAATCGAGGTGCTGCACCTTTGTAGAAATGCCCACA-TTAAG-----------------------TTTTCAACATC-----------------AAACCA--------------CAA--------------CCTCACCCC-----------TGGAAGACCAAACAGGAAGCTGGGAGAATTCAGTTGATGCCACA-------------------------------------GAAGGCTGCTTCACCCAG------CTGTCTAGGAATGAAAACAGTACTGTGAGGTGGAAAGGCCC------TGGCTTCTGCACCTACGGGGCAAAGAGATTTCATTTGATTCAAGAATCAAAATTTCAGA-TTATCCCATAATATTCAGTGCAAGGA--ACTACTCTATTCAAAGGAGGCAATGGAAATGAGAAGTCCCTGAGTCCTGAGGGACAGACAGAGCTTCCAGGCGGTGGACATCCTCGATGTAAAAGCCCAACAAGGAAAGAAATACTAAGACTTCTGTTTTCTCTTAAGGGCCCTGCTTCCTTCCCTAAGTCCTCTGG----------------------------------------------------------GTTCCCCCT-------------------AATGGCATTTCAGGGCTCAGGTTTGCCTCTGTAAAGAGCCCGGCTCTAAGTACCCTTGGCAGCAATAAAGGGCATCCCTGGCCCGCAGTGGGTGACATGGGAGGGATGCAGGTCACTC-----AGTTAGTGCTGAAGGGATCCTCAGGGAGACCCCACGCCCACGGCCCCAG--GACTCACAGCACGAAGAGGTCCTCTTCACAAGGGTTGTAGTCTTCTTCTACTTCCTGGGAGTACAACAGCATCTGCCTGTCGGGAAGGAGATCACCGTTGAGACTCTGGTGCAGGTACCAGGAC----------CCCAGTCACAGGTGAGGCCTCAGC--CAG--------------GCATCTTCAATGGGCCACCTCCTCCCAGGAAGCAGCACC-----------------------AGCCAGGAAAGGGATCAacagggtttggactcaaaatccctggggtccagggccagttctgcccctggtaatc------------ttaggcaagtaacaatctttccta--------------------gttgtctatcagaaggagat-------------------gatgatg----------atgataac-----atttcataggatcaccagattattgagaat
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180970219  987 + 198365852 ---CTTTCCACCTAAACAGGATGTAGGTTTTAGGAAG----TCCACTATTAGAATCAAGATGCTACACCTTTGTAGAAATGCCCACA-TTAAG-----------------------TTTTCAACATC-----------------AAACCA--------------CAA--------------CCTCAGCCC-----------TGGAAGACCAAAGAGGAAGCTGGGAGAATTCAGTTCCCAGCACA-------------------------------------GAAGGCTACTGCACCCAG------CTGTCTAGGAATGAAGTCAGTGCTGTGAGGTGGAAAGGCCC------TGGTTCCTACCCCTACGGGGCAAAGAGATTTCATTTGATTCAAGAATTAAAATTTCAGA-TTATCCCATAATACTCAGTGCAAGGA--ACTACTCTATTCAAAGGAGGCAATGGAAAGGAGAAGTCCCTGAATCCTGAGGGACAGACAG--CTTCTATGCAGTGGACATCCTTGATGTAAAAGCCCAACAAGAAAAGAAACACTAAGACTCCTGTTTTCTCTTAAGGGCCCTGCTTCTTTCCGTAAGTCCTCTGG----------------------------------------------------------GTTCCCCC--------------------AATGGCATTTCAGGGCTCAGGTTTGCCTCTGTAAGGAGCCTGGCTCTAAGTGCCCTTGGCAGCAATAAAGGGCATCCCTGGTCTGCAGTGAGTGACATGGGAGGGATGCAGGTCACTC---------AGTGCTGAAGGGATCCTCAGGGAGACCCCACGCCCACGGCCCCAG--GACTCACAGCACGAAGAGGTCCTCTTCACAAGGGTTGTAGTCTTCTTCTACCTCCTGGGAGTACAACAGCATCTGCCTGTTGGGAAGGAGAGAACCA-TGAGACTCTGGTGCAGGTACCAGGAC----------CCCAGTCACAGGTGAGGCCTCAGC--CAG--------------GCATCTTCAATGGGCCACCACCTCCCAGGAAGCAGCACC-----------------------AGCCAGGAAAGGGATCAacagggtttggactcaaaattcctggggtccagggccagttctgcccctggtaatc------------ttaggcaagtaacaatctttccta--------------------gttgtctatcagtgggg-------------------------gatg----------atgataacattt-atttcataggatcaccagattattgagaat
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174715947  987 + 192294377 ---CTTTCCACCTAAACAGGATGTAGGTTTTAGGAAG----TCCACTATTAGAATCAAGATGCTACACCTTTGTAGAAATGCCCACA-TTAAG-----------------------TTTTCAACATC-----------------AAACCA--------------CAA--------------CCTCAGCCC-----------TGGAAGACCAAAGAGGAAGCTGGGAGAATTCAGTTCACAGCACA-------------------------------------GAAGGCTACTGCACCCAG------CTGTCTAGGAATGAAGTCAGTGCTGTGAGGTGGAAAGGCCC------TGGTTCCTACCCCTACGGGGCAAAGAGATTTCATTTGATTCAAGAATTAAAATTTCAGA-TTATCCCATAATACTCAGTGCAAGGA--ACTACTCTATTCAAAGGAGGCAATGGAAAGGAGAAGTCCCTGAATCCTGAGGGACAGACAG--CTTCTATGCAGTGGACATCCTTGATGTAAAAGCCCAACAAGAAAAGAAACACTAAGACTCCTGTTTTCTCTTAAGGGCCCTGCTTCTTTCCGTAAGTCCTCTGG----------------------------------------------------------GTTCCCCC--------------------AATGGCATTTCAGGGCTCAGGTTTGCCTCTGTAAGGAGCCTGGCTCTAAGTGCCCTTGGCGGCAATAAAGGGCATCCCTGGTCTGCAGTGAGTGACATGGGAGGGATGCAGGTCACTC---------AGTGCTGAAGGGATCCTCAGGGAGACCCCACGCCCACGGCCCCAG--GACTCACAGCACGAAGAGGTCCTCTTCACAAGGGTTGTAGTCTTCTTCTACCTCCTGGGAGTACAACAGCATCTGCCTGTTGGGAAGGAGAGAACCA-TGAGACTCTGGTGCAGGTACCAGGAC----------CCCAGTCACAGGTGAGGCCTCAGC--CAG--------------GCATCTTCAATGGGCCACCACCTCCCAGGAAGCAGCACC-----------------------AGCCaggaaagggatcaacagggtttggactcaaaattcctggggtccagggccagttctgcccctggtaatc------------ttaggcaagtaacaatctttccta--------------------gttgtctatcagtgggg-------------------------gatg----------atgataacattt-atttcataggatcaccagattattgagaat
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163381071  982 + 180432695 ---CTTTCCACCTAAACAGGATGTAGGTTTTAGGAG------TCACTA-TAGAATC-AGATGCTGCACCTTTGTAGAAATGCCCACA-TTAAG-----------------------TTTTCAACATC-----------------AAACCA--------------CAA--------------CCTCAGCCC-----------TGGAAGACCAAAGAGGAAGCTGGGAGAATTCAGTTCACAGCACA-------------------------------------GAAGGCTGCTGCACCCAG------CTGTCTAGGAATGAAGTCAGTGCTGTGAGGTGG-AAGGCCC------TGGTTCCTACCTCTACGGGGCAAAGAGATTTCATTTGATTCAAGAATTAAAATTTCCGA-TTATCCCATAATACTCAGTGCAAGGA--ACTACTCTATTCAAAGGAGGCAATGGAAAGGAGAAGTCCCTGAATCCTGAGGGACAGACAG--CTTCTATGCAGTGGACATCCTTGATGTAAAAGcccaacaagaaaagaaacactaaGACTCCTGTTTTCTCTTACGGGCCCTGCTTCTTTCCGTAAGTCCTCTGG----------------------------------------------------------GTTCCCCC--------------------AATGGCATTTCAGGGCTCAGGTTTGCCTCTGTAAGGAGCCTGGCTCTAAGTGCCCTTGGCAGCAATAAAGGGCATCCCTGGTCTGCAGTGAGTGACATGGGAGGGATGCAGGTCACTC---------GGTGCTGAAGGGATCCTCAGGGAGACCCCACGCCCACGGCCCCAG--GACTCACAGCACAAAGAGGTCCTCTTCACAAGGGTTGTAGTCTTCTTCTACCTCCTGGGAGTACAACAGCATCTGCCTGTTGGGAAGGAGAGAACCA-TGAGACTCTGGTGCAGGTACCAGGAC----------CCCAGTCACAGGTGAGGCCTCAGC--CAG--------------GCATCTTCAATGGGCCACCACCTCCCAGGAAGCAGCACC-----------------------AGCCAGGAAAGGGATCAACAGGGTTTGGACTCAAAATTCCTGGGGTCCAGGGCCAGTTCTGCCCCTGTTAATC------------TTAGGCAAGTAACAATCTTTCCTA--------------------GTTGTCTATCAGTGGGG-------------------------GATG----------ATGATGACATTT-ATTTCATAGGATCACCAGATTATTGAGAAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110413500  986 + 127223203 ---CTTTCCACCTAAACAGGATGTAGGTTTTAGGAAG----TCCCCTATTAGAATCAAGATGCTGCACCTTTGTAGAAATGCCCACA-TTAAG-----------------------TTTTCAACATC-----------------AAACCA--------------CAA--------------CCTCAGCCC-----------TGGAAGACCAAAGAGGAAGCTGGGAGAATTCAGTTCACAGCACA-------------------------------------GAAGGCTACTGCACCCAG------CTGTCTAGGAATGAAGTCAGTGCTGTGAGGTGGAAAGGCCC------TGGTTCCTACCCCTACGGGGCAAAGAGATTTCATTTGATTCAAGAATTAAAATTTCAGA-TTATCCCATAATACTCAGTGCAAGGA--ACTACTCTATTCAAAGGAGGCAATGGAAAGGAGAAGTCCCTGAATCCTGAGGGACAGACAG--CTTCTGTGCAGTGGACATCCTTGATGGAAAAGCCCAACAAGAAAAGAAACACTAAGACTCCTGTTTTCTCTTAAGGGCCCTGCTTCTTTCCGTAAGTCCTCTGG----------------------------------------------------------GTTCCCCC--------------------AATGGCATTTCA-GGCTCAGGTTTGCCTCTGTAAGGAGCCTGGCTCGAAGTGCCCTTGGCAGCAATAAAGGGCATCCCTGGTCCACAGTGAGTGACATGGGAGGGATGCACGTCACTC---------AGTGCTGAAGGGATCCTCAGGGAGACCCCACGCCCATGGCCCCAG--GACTCACAGCACGAAGAGGTCCTCTTCACAAGGGTTGTAGTCTTCTTCTACTTCCTGGGAGTACAACAGCATCTGCCTGTTGGGAAGGAGAGAACCA-TGAGACTCTGGTGCAGGTACCAGGAC----------CCCAGTCACAGGTGAGGCCTCAGC--CAG--------------GCATCTTCAATGGGCCACCACCTCCCAGGAAGCAGCACC-----------------------AGCCAGGAAAGGGATCAacagggtttggactcaaaattcctggggtccagggccagttctgcccctggtaatc------------ttaggcaagtagcaatctttccca--------------------gttgtctatcagtgggg-------------------------gatg----------atgataacattt-atttcataggatcaccagattattgagaat
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23760249 1076 - 128169293 ---CCCTCCACCTAAACAGGATATAGGTTTTAGGAAG----TCCTCTATTAGAATCAAGGTGCTGCACCTTTGTAGAAATGCCCACAGTTAAG-----------------------TTTTCAACATC-----------------AAACCAGAAGTGTCACTCCCCAG--------------TCTCACCCC-----------TGGAAGGCCAAATAGGAAGCTGGGAGAATTCAGTTCACGTCACA-------------------------------------GAA-GCTACTTCACCCAG------CTCTCAAGGAATGAAGCCAGTGCTGTGAGGTGTAAAGGCCC------TGGCTCCTGCACTTACGTGGCAAAGAGATTTCATTCGATTCAAGAATTAAAATGTCAGA-TTATCCCGTAATACTCAGTGCAAGGA--CCTACTCTATTCAAAGGAGGCAATGGAAATGAGAAGTCCCTGAGTCCTGAGGGACAGACAGAGCTTCCATGGGGTGGACACCCTCGATGTAAAGGCCCAAC-----AAGAGACACTAAGACTCCTG-TTTCTCTTCAGGGCCCTGCTTCTTTCCCTAAGTCCTCTGGGAAATAACCAGCATGACGTCAATGCCATAGGCCTCCAGCAGGTCCAGGAGAAAGCTCCGGTCTCCTTGGGGGTCCAGACCCATGCCAGTGGCATTTCAGGGCTCA-GTTTACCTCTGTAAGGAGCCTGGCTTGAAGTGCCCTTGGCAGCAATAAAGGGCATCCCTGGCCCGCAGTGAGTGACAAGAGAGGGATGCAGGTCACTC-----AGTTAGTGCCAAAGGGATCCTCAGGGAGACCCCATGCCCACGGCCCCAG--GACTCACAGCACAAAGAGGTCCTCTTCGCAAGGGTTGTAGTCTTCTTCTACTTCCTGGGAGTACAACAGCATCTGCCTGTGGGGAAGGAGATCACCG-TCAGACTCCGGTGCAGGTGCCAGGAC----------CCTGGTCACAGGTGAGGCCTCAGC--CAG--------------GCATCTTCAGTGGGCCACCACCTCCCAGgaagcagcatc-----------------------agtcaggtaagggatccacagggtttggactcaaaatccctggggtccagggccagttctgcccctggtaatt------------ttaggcaagtaacaatctttccta--------------------gttatctat---tgggg-----------------------atgatg----------atgataacattt-atttcacaggatcaccaaatgattga-aat
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40407659 1015 + 149736546 ---CTGCCCATTCGCACAGTATGCATGCATTAGAAAGGAGCCTCAAGAACAGGATCA---------ACCTCTGTAGAGATGCCCTCA-TCAAAACTAGGGCCCCTCCAGGAGATTTGTTTCTACTTC------------------AATTA--------------CAG--------------TTCCACTCT-------------AATTTTGAAACAGGA--CT-------TCCAGT--------------------------------------------------GGCCACTT---------------------GAGTATAATGTGTACTGGAAGGAG--CTGGCCCTTTCCGTGGCTACCAGATCT--GGGGAAGAGAGATTACACTGCATTCAAACGTTGGATTTTCAGA-TGATCTCATAATACTCAGCACAAAAACCCCTGGTCTTTTCAGAGGAGGCAGTG--AGTGAGAGGG---------TGGAGAGATGGACAG-----CTATGTGGT-GACATTCTGGATACAAATGTTTAAT-----ACAATGTACTTTCACGGTCACCACTTCTCCAGGGCCTGCCCTGTCTCTTCAGCCACTCAGG----------------------------------------------------------TTTCACCCT-------------------GATGGCTTTGCAGGACTCAGGT---CACCTCTAAGGA-CAGAGCACTGAGAGCCCAAGG--ATGATGACAGTCA-CCCTCCACTGCAGTGGGATGCATGGAAGGGATGCAAGTTGTTTGCAGAAGTTGGTACTGAAAGCATTCCCAG---AACCCCACAGCTGACACCCCGGCTGACTCACAGCACAAAGAGGTCCTCTTCACATGGGCTGTAGTCTCCTTCAACTTCCTGGGAGTACAACAGCATCTGCCTGTTGGAAGGGGGAACACCA-TCAGACTCCAGTGGACACTACA--------------TCCAGTTA---GCTAATTGGCAGCAACAA--------------GCACCAATGATGG--CTGTATCTCTCAGGAAGCGGCACCTCACAGAGTTGTGCCAGGCCTGAAGTTGAGTAAACAAGGAACAGAACCTGGACTCAAA---CCCAGGATCTATGGCCCATTTTGCTAATGGTCCCCCGCCCTGCCCCATTAGTCATGGGACTGTTTTGTCCACTGACTGGGACAAatattgtattatatattatatacatgtta-------------catatattatatacatattatatacTAACCCTTCATTTTGTAGCATAAACA----ATTGAGAGT
i mm10.chr6                I 449 C 0
s canFam3.chr16             52080613 1036 -  59632846 CTCTGTTCCCCGTCAACACCGGGTAGGCACGGGCGAG----TGCGCTTGGGGA------GTGCCACGCTTTTGTCAAAATGTCAACC-TTTAG-----------------------TTTTCGACCCCTGAGTCCCCCGCAGTTGGAGCTG--------------CAGATGCCCTTCCCGGCCCCCACCCAGGACACAGCGATGGAGCACCCCCCAGGAAGCTGGTGGACCCCAGAAGCTGGCAGACCCATTTCTGCTTCGAGTCCGGCCCTGCCCTCCCCGCTGGCGCCGCTTCACACGGCTGCTCCTGCTCGGAAAGGAGAGCGACACCCCGAGGTGTCGGGACCA------CGGCTCCTGCCCC-----GACCTCCGCCTCTCACTAGGTTCAAAAGTGAAAATGTCTGATTTATCCCGTAACACTGGATGCAAGGA--AGGGCTTGACTTGCACGGGGCGATGG--AGGCCGAGCCCCCGAGGCCCGAAGGACACACAT-----CCACGCAGCGGACGTC---GGAGGTAACGCTCAAC--GGGAAGAAAC---AGGGCTCCTG-GTGCTCTTAA--CCTCTGCTGCTTCCCTCAACTCCTCTGG----------------------------------------------------------GGGCCCCC--------------------GGCGG--------------------ACTCCGTACAG-GCCCCGCTCTCTGTGTCCCCGGCAGCAGTGAAGGACGTCCCTGGGCTGCCGCGGGTGAC--GGGAGGGCTGGAGG-----C-------------CCGAGGGG---------------------CTGGGGCCCGGGCTGACTTACAGCACAAAGAGGTCCTCCTCGCACGGGTTGTAGTCTTCTTCCACCTCCTGGGAGTACAGCAGCATCTGCCTGTGGTGGAGGAGGCC-CCA-TCACGCTCTGGTGCTGCTG-CAGGACACCCCCTGGGCCGGGCACCTGCTGGGCCCCCTGC--CGGGAGGAGCAGCCCCAGCACCCCCCTAGCCCCGCCCCCCTCCCGCAGGGAGAGGC-----------------------GGACAGGAAAGGAATGCACAGGGCCCGGAGGC---CCTCCCGCGGGCCGGGCCCTGT----------GTGACC------------CCAGGCAAGTGGCCATCGTGCTTA--------------------ACTGCCCAGCAATCAGGTGATGATGTTACTTTTTTCGCTGCTGATG------GCAAATGATATCATTT-ATTCCACAGCACAGCCACATTATTGAGAGT
i canFam3.chr16            C 0 I 525

a score=790197.000000
s hg38.chr7_GL383534v2_alt     31106 314 +    119183 gacatcaga---tacatataagcaagctt-ctaatacggcgaccaacacaatgaaggtgctcagtca--aggtGCTTCTAAGCCGCACACACAGGTACATCTAAAGGTCACGTGGAGAGCAGCTGGCAGCTAAGGTAATT------TCCA--------CAGATTCCAAAGTCCATGAGAAGAAATAAACCAGCACCGTGGATCTACTCCCCTCCTATCAGGGCAGCATACAGGGAGCCTGGCCTCTTCTACTGCGGGGCTTCCCTTCATTTCCATCTCCATCCCAGGCAGCATGGAGACTGGGAGAAATGTGTCAGGGAAGGGGCAGAAGACAG
s panTro4.chr7             143131353 314 + 161824586 gacatcaga---tacatataagcaagctt-ctaatatggcgaccaacacaatgaaggtgctcagtca--aggtGCTTCTAAGCCGCACACACAGGTACATCTAAAGGTCACGTGGAGAGCAGCTGGCAGCTAAGGTAATT------TCCA--------CAGATTCCAAAGTCCATTAGAAGAAAGAAACCAGCACCGTGGATCTACTCCCCTCCTATCAGGGCAGCATACAGGGAGCCTGGCCTCTTCTACTGCGGGGCTTCCCTTCATTTCCATCTCCATCCCAGGCAGCATGGAGACTGGGAGAAATGTGTCAGGGAAGGGGCAGAAGACAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138935509 314 + 157549271 gacatcaga---tacatataagcaagctt-ctaatacagcgaccaacacaatgaaggtgctcagtca--aggtgcttctaAGCTGCACACACAGGTATATCTAAAGGTCACGTTGAGAGCATCTGGCAGCTAAGGTAATT------TCCA--------CAGATTCCAAAGTCCATGAGAAGAAAGAAACCAGCACCGTGGATCTACTCCCCTCCTATCAGGCCAGCATACAGGGAGCCTGGCCTCTTCCACTGCGGGGCTTCCCTTCATTTCCATCTCCATCCCAGGCAGCATGGACACTGGGAGAAATGTGTCAGGGAAGGGGCAGAAGACAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93072725 314 + 110113093 ggcatcaga---tacatataagcaagctt-ctaatacagcaaccaacacaataaaggtgctcagtca--aGCTGCTTCTAAGCCGCACACACAGGTACATCTAAAGGTCACGTGGAGAGCATGTGGCAGCTAAGGTAATT------TCCA--------CAGATTCCAAAGTCCATGAGAAGAAAGAAACCAGCACCGTGGATCTACTCCCCTCCTATCAGGGCAGCATACAGGGAGCCTGGCCTCTTCCACTGCGGGGCTTCCCTTCATTTCCATCTCCATCCCAGGCAGCATGGAGACTGGGAGAAATGTGGCAGGGAAGGGGCAGAAGACAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180971206 246 + 198365852 gacatcaga---tacatataagcaagctt-ctaatacagcgaccaacacaatgaaggtgctcagtca--aggtGCT----------------------------------------------------------------------------------CAGATTCCAAAGTCCATGAGAAGAAAGAAACCAGCACCGTGGATCTACTCCCCTCCTATCAGGGCAGCATACAGGGAGCCTGGCCTCTTCCACTGCAGGGCTTCCCTTCGTTTCCATCTCCATCCCAGGCAGCATGGAGACTGGCAGAAATGCGTCAGGGAAGGGACAGAAGACAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174716934 246 + 192294377 gacatcaga---tacatataagcaagctt-ctaatacagcgaccaacacaatgaaggtgctcagtca--aggtGCT----------------------------------------------------------------------------------CAGATTCCAAAGTCCATGAGAAGAAAGAAACCAGCACCGTGGATCTACTCCCCTCCTATCAGGGCAGCATACAGGGAGCCTGGCCTCTTCCACTGCAGGGCTTCCCTTCGTTTCCATCTCCATCCCAGGCAGCATGGAGACTGGCAGAAATGCGTCAGGGAAGGGACAGAAGACAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163382053 246 + 180432695 GACATCAGA---TACATATAAGCAAGCTT-CTAATACAGTGACCAACACAATGAAGGTGCTCAGTCA--AGGTGCT----------------------------------------------------------------------------------CAGATTCCAAAGTCCATGAGAAGAAAGAAACCAGCACCGTGGATCTACTCCCCTCCTATCAGGGCAGCATACAGGGAGCCTGGCCTCTTCCACTGCAGGGCTTCCCTTCGTTTCCATCTCCATCCCAGGCAGCATGGAGACTGGCAGAAATGCGTCAGGGAAGGGACAGAAGACAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110414486 314 + 127223203 gacatcaga---tacatataagcaagctt-ctaatacagcgaccaacacagcgaaggtgctcagtca--aggtGCTTCTACGCCGCACACACAGGTACATCTAAAGGTCACGTGGAGAGCATCTGGCAGCTAAGGTAATT------TCCA--------CAGATTCCAAAGTCCATGAGAAGAAAGAAACCAGCACCGTCGATCTACTCCCCTCCTATCAGGGCAGCATACAGGGAGCCTGGCCTCTTCCACCGCAGGGCTTCCCTTCGTTTCCATCTCCATCCCAGGCAGCATGGGGACTGGCAGAAATGCGTCAGGGAAGGGACAGAAGACAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23761325 311 - 128169293 ggcatcaga---tacatgtaagcaagctt-ctaacacagcggtcgacacaatgaagatgctcagtca--agagggttctaAGCCGCATACACAGGTACATGTAAAGGTCACGCGGAGAGCGTCTGGCAGTGAAGGTAGTT------TCCA--------CAGATTCCAAAGTCCACGAGAAGAAAGAAAACAGCACCATGGACCT-CTCCCCTCCTATCAGAGCAGCACACTGGGAGCCTGGCCTCTTCCACTGCCGAGCTTCCCTACATTTCCATCTGTATCCTGAGCAGCATGGAGACTGGCAGAAATGCATCAGGGAAGG--CAGAAAACAG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40408674 248 + 149736546 TACACGGAACAGTGTACATACACAAGCTTCCTAATG----AGTCCACATAGTGTAGATGCTCAGTCAGTGGGTATTCCAAACATGCAGGCAAAGGTCTTT-------------GGGGTGTTTCTGAAAGGTAGTGTGACTGGTTCCTTCACTGGGGTTTAGAGTCTTAAGCCCATCAGGA------------------------ACCCCCCATGTGTGAGGGCAAGATGGAGGACTGCCAGCCTCCTAAAGCACA--------------------------------------GGAGACTGGGAAA-----GCTCAAGTGGTGATAGA--GTGG
i mm10.chr6                C 0 C 0
e canFam3.chr16             52081649 525 -  59632846 I

a score=1111396.000000
s hg38.chr7_GL383534v2_alt     31420 280 +    119183 GCTTTGCAGAGA---------CCCCCATGCT----------GGAGCTGCCCTGAGGAG---------------GGTG-GAGCCCCT--------GGTTCTCCCCTTAGCTGC---CACT-------------------------------------ACCTCTGCTCGTTGAGCCGGCGGTACTTCTCCCTGTCAGCACTGTTGATCTTCAGCAGCGGCTGCAGGTGGTCGTGGTGTGTCTTCACATTCTGGTTATCCACGTAGACGTCATACAGCTCCCGCTTCTCCTCGAATATCTTCTCTGTGGTGCCTGTGGAACCCGGGGTTAGAGAGGTGGGAACCC---ACCCGACCCCACTGGGAAACA
s panTro4.chr7             143131667 280 + 161824586 GCTTTGCAGAGA---------CCCCCATGCT----------GGAGCTGCCCTGAGGAG---------------GGTG-GAGCCCCT--------GGTTCTCCCCTTAGCTGC---CACT-------------------------------------ACCTCTGCTCATTGAGCCGGCGGTACTTCTCCCTGTCAGCACTGTTGATCTTCAGCAGCGGCTGCAGGTGGTCGTGGTGTGTCTTCACATTCTGGTTATCCACGTAGACGTCATACAGCTCCCGCTTCTCCTCGAATATCTTCTCTGTGGTGCCTGTGGAACCCGGGGTTAGAGAGGTGGGAACCC---ACCCAACCCCACTGGGAAACA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138935823 281 + 157549271 GCTTTGCAGAGAC--------CCCCCACGCT----------GGAGCTGCCCTGAGGAG---------------GGTG-GAGCCCCT--------GGCTCTCCCCTTAGCTGC---CGCT-------------------------------------ACCTCTGCTCGTTGAGCCGGCGGTACTTCTCCCTGTCAGCACTGTTGATCTTCAGCAGCGGCTGCAGGTGGTCGTGGTGTGTCTTCACATTCTGGTTATCCACGTAGACGTCATACAGCTCCCGCTTCTCCTCGAATATCTTCTCTGTGGTGCCTGTGGAACCCGGGGTTAGAGAGGTGGGAACCC---ACCCGACCCCACTGGGAAACA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93073039 280 + 110113093 GCTTGGCAGAGA---------CCCCCAGGCT----------GGAGCTGCCCTAAGGAG---------------GGTG-GAGCCCCT--------GGTTCTCCCCTTAGCTGC---CGCG-------------------------------------ACCTCTGCTCGTTGAGCCGGCGGTACTTCTCCCTGTCAGCACTGTTGATCTTCAGCAGCGGCTGCAGGTGGTCATGGTGTGTCTTCACATTCTGGTTATCCACGTAGACGTCATACAGCTCCCGCTTCTCCTCGAATATCTTCTCTGTGGTGCCTGTGGAACCCGGGGTTAGAGAGGTGGGAACCC---ACCCAACCCCACTGGGAAACA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180971452 278 + 198365852 GCTTTGCAGAGA----------CCCCATGCT----------GGAGCTGCCCTGAGGAG---------------GGTG-GAGCCCC---------GGTTCTCCCCGTAGCTGC---CGCT-------------------------------------ACCTCTGCTCATTGAGCCGGCGGTACTTCTCCCTGTCAGCGCTGTTGATCTTCAGCAGCGGCTGCAGGTGGTCGTGGTGTGTCTTCACATTCTGGTTATCCACGTAGACGTCATACAGCTCCCGCTTCTCCTCAAAGATCTTCTCTGTGGTGCCTGTGGAACCCGGGGTTAGAGAGGCGGGAACCC---ACCCGACCCCACTGGGAAGCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174717180 278 + 192294377 GCTTTGCAGAGA----------CCCCATGCT----------GGAGCTGCCCTGAGGAG---------------GGTG-GAGCCCC---------GGTTCTCCCCGTAGCTGC---CGCT-------------------------------------ACCTCTGCTCATTGAGCCGGCGGTACTTCTCCCTGTCAGCGCTGTTGATCTTCAGCAGCGGCTGCAGGTGGTCGTGGTGTGTCTTCACATTCTGGTTATCCACGTAGACGTCATACAGCTCCCGCTTCTCCTCAAAGATCTTCTCTGTGGTGCCTGTGGAACCCGGGGTTAGAGAGGCGGGAACCC---ACCCGACCCCACTGGGAAGCA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163382299 279 + 180432695 GCTTTGCAGAGA----------CCCCATGCT----------GGAGCTGCCCTGAGGAG---------------GGTG-GAGCCCCT--------GGTTCTCCCCGTAGCTGC---CGCT-------------------------------------ACCTCTGCTCATTGAGCCGGCGGTACTTCTCCCTGTCAGCGCTGTTGATCTTCAGCAGCGGCTGCAGGTGGTCGTGGTGTGTCTTCACGTTCTGGTTATCCACGTAGACGTCATACAGCTCCCGCTTCTCCTCAAATATCTTCTCTGTGGTGCCTGTGGAACCCGGGGTTAGAGAGGCGGGAACCC---ACCCGACCCCACTGGGAAGCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110414800 280 + 127223203 GCTTTGCAGAGA---------CCCCCATGCT----------GGAGCTGCCCTGAGGAG---------------GGTG-GAGCCCCT--------GGTTCTCCCCGTAGCTGC---CGCT-------------------------------------ACCTCTGCTCATTGAGCCGGCGGTACTTCTCCCTGTCAGCACTGTTGATCTTCAGCAGCGGCTGCAGGTGGTCGTGGTGTGTCTTCACATTCTGGTTATCCACGTAGACGTCATACAGCTCCCGCTTCTCCTCAAATATCTTCTCTGTGGTGCCTGTGGAACCCGGGGTTAGAGAGGCGGGAACCC---ACCCGACCCCCCTGGGAAGCA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23761636 277 - 128169293 GCTTTGCAGAGA---------CCCCCTTGCT----------GGAGCTGCCCC---GAG---------------GGTG-GAGCCCCT--------AGCGCTCCCCTTAGCTGC---CGCT-------------------------------------ACCTCTGCTCATTGAGCCGGCGGTACTTCTCCCTGTCAGCACTGTTGATCTTCAGCAGCGGCTGCAGGTGGTCATGGTGTGTCTTCACATTCTGGTTATCCACGTAGACGTCGTACAGCTCCCGCTTCTCCTCGAATATCTTCTCTGTGGTGCCTGTGGAACCAAAGGTTAGAGAGATGGGAACCC---ACCTGACCCCACCAGGAAGCA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40408922 332 + 149736546 GCTTTTCGCAGATTCGCGGGACCATCCTGCTTAG-------GGTGCTGCTGTGACTGG---------------CCTGCAAGTCCCTTTTAGCACAGCACTGGCCTGGGCTGCACTCACTAGCACACAGGACAAGCATCTGGCAGATGAGCCATCTCACCTCTGCTCATTGAGCCGACGGTACTTCTCCCTGTCTGCACTGTTGATCTTCAGCAGGGGTTGCAGGTGGTCATGGTGTGTCTTTACATTCTGGTTGTCCACGTACACATCGTACAGCTCACGCTTCTCTTCAAATATCTTCTCTGTGGTACCTTTGGAGCCCAGGGTAAATGAGGTAAGA------------ACCCCAAGGGGacaca
i mm10.chr6                C 0 I 42
s canFam3.chr16             52082174 325 -  59632846 GCCTGGCAGGAA----GGCAGCCCCCACGCCCCGGTAGGCAGGACAAGCCCCCAGGAGCCCGGCCCGTCACCTGCAG-GCCCCCCT--------GGCTC---CCGGGGCCAC---CGCT----------CCCCGCGCCCCACACCCCGGCTCCC--ACCTCTGCTCGTTGAGCCGCCGGTACTTCTCGCGGTCGGCGCTGTTGATCTTCAGCAGGGGCTGCAGGTGGTCGTGGTGCGTCCTCACGTTCTGGTTGTCCACGTACACGTCATACAGTTCCCGCTTCTCCTCGAAAATCTTCTCGGTGGTGCCTGGGACACCCGAGTTCAGGGC-ATGGGAACCTAGAAGCCGGCCCCGG---------
i canFam3.chr16            I 525 C 0

a score=98114.000000
s hg38.chr7_GL383534v2_alt     31700 33 +    119183 AGGCGCCCAGGAGCCCTGTGTCTGGGAGGAGCA
s panTro4.chr7             143131947 33 + 161824586 AGGCGCCCAGGAGCCCTGTGTCTGGGAGGAGCA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138936104 33 + 157549271 AGGCGCCCAGGAGCCCCATGTCTGGGAGGAGCA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93073319 33 + 110113093 AGGCGCCCACAAGCCCCATGTCTGGGAGGAGCA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180971730 33 + 198365852 AGGCTCCCAGGAGCCCCGCGTCTGGCAGGAGCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174717458 33 + 192294377 AGGCTCCCAGGAGCCCCGCGTCTGGCAGGAGCA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163382578 33 + 180432695 AGGCTCCCAGGAGCCCCGCGTCTGGCAGGAGCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110415080 32 + 127223203 AGGCT-CCAGGAGCCCCGCGTCTGGCAGGAGCA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23761913 33 - 128169293 AGGCACCCAGGAGGCCCGTGTCTGGGAGGAGCA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52082499 29 -  59632846 AGGCACC----AGCCCGACCCCCGGGGGAAGCG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40409254 42 + 149736546 I

a score=287429.000000
s hg38.chr7_GL383534v2_alt     31733 68 +    119183 GGGCTGGGACCTGAGGGCAAGATGAGGGGAGGGCCCCGTACTCACAGGCCACATAGGACACCTCTACC
s panTro4.chr7             143131980 68 + 161824586 GGGCTGGGACCTGAGGGCAAGATGAGGGGAGGGCCCCATACTCACAGGCCACATAGGACACCTCTACC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138936137 68 + 157549271 GGGCTGGGACCTGAGGGCAAGATGAGGGGAGGGCCCCGTACTCACAGGCCACATAGGACACCTCTACC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93073352 68 + 110113093 GGGCTGGGACCTGACGGCAAGATGAGGGGAGGGCCCCGTACTCACAGGCCACATAGGACACCTCTACC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180971763 68 + 198365852 GGGCTGGGACCTGAGGGCAAGATGAGGGGAGGGCCCCGTACTCACAGGCCACATAGGACACCTCTACC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174717491 68 + 192294377 GGGCTGGGACCTGAGGGCAAGATGAGGGGAGGGCCCCGTACTCACAGGCCACATAGGACACCTCTACC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163382611 68 + 180432695 GGGCTGGGATCTGAGGGCAAGATGAGGGGAGGGCCCCGTACTCACAGGCCACATAGGACACCTCTACC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110415112 67 + 127223203 GGGCTGGGACCTGAGGGCAAGATGAGGGG-GGGCCCCGTACTCACAGGCCACATAGGACACCTCTACC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23761946 68 - 128169293 GGGCTGGGACCTGAGGGCAAAATGAGGGGAAGGCCCCATACTCACAGGCCACATAGGACACCTCTACC
i calJac3.chr8             C 0 I 895
s mm10.chr6                 40409296 68 + 149736546 AGAATTAAACATCACAGGGAGAGTTGGGGAGGTCCCCATACTCACAGGCTACATAGGACACCTCAACT
i mm10.chr6                I 42 C 0
s canFam3.chr16             52082528 62 -  59632846 GGG--GGGCCC----GGGAAGCTGGAGGCAGGGCCCCGTACTCACAGGCCACGTAGGACACCTCTACC
i canFam3.chr16            C 0 C 0

a score=759058.000000
s hg38.chr7_GL383534v2_alt     31801 179 +    119183 TCCAGGCTCTCGATGTCAGCCACGTTCACGTAGAAGAAAGGTTTGGACTCAGGAATGGTGCCCCCGATGCCAGGCAGTGAAACGTTGGCCAAGCAGCAGCAGCAGTACACTGTGGGGATAGAGGAGGTGAGCGGGGAGGGTCTGCCCCTCCACAGCCCTTCCTC----CCTCGGAGCCTGCGG
s panTro4.chr7             143132048 179 + 161824586 TCCAGGCTCTCGATGTCAGCCACGTTCACGTAGAAGAAAGGCTTGGACTCAGGAATGGTGCCCCCGATGCCAGGCAGTGAAACGTTGGCCAAGCAGCAGCAGCAGTACACTGTGGGGACAGAGGAGGTGAGCGGGGAGGGTCTGCCCCTCCACAGCCCTTCCTC----CCTCGGAGCCTGCGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138936205 179 + 157549271 TCCAGGCTCTCGATGTCAGCCACGTTCACGTAGAAGAAAGGCTTGGACTCAGGAATGGTGCCCCCGATACCAGGCAGTGAAACGTTGGCCAAGCAGCAGCAGCAGTACACTGTGGGGACAGAGGAGGTGAGCGGGGAGGGTATGCCCCTCCACAGCCCTTCCTC----CCTCGGAGCCTGCGG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93073420 179 + 110113093 TCCAGGCTCTCGATGTCAGCCACGTTCACGTAGAAGAAAGGCTTGGACTCAGGAATGGTGCCCCCGATGCCAGGCAGTGAAACGTTGGCCAAGCAGCAGCAGCAGTACACTGTGGGGACAGAGGAGGTGAGCGGGGAGGGTGTGCCCCTCCACAGCCCTTCCTC----CCTCGGAGCCTGCGG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180971831 178 + 198365852 TCCAGGCTCTCGATGTCGGCCACGTTCACGTAGAAGAAAGGCTTGGACTCAGGAATGGTGCCCCCGATGCCAGGCAGTGAAACGTTGGCCAAGCAGCAGCAGCAGTACACTGTGGGGACAGAGGAGGTGAGCGGGGAGGGTCTGCCCCTCCACC-CCCTTCCTC----CCTTGGAGCCTGCAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174717559 178 + 192294377 TCCAGGCTCTCGATGTCGGCCACGTTCACGTAGAAGAAAGGCTTGGACTCAGGAATGGTGCCCCCGATGCCAGGCAGTGAAACGTTGGCCAAGCAGCAGCAGCAGTACACTGTGGGGACAGAGGAGGTGAGCGGGGAGGGTCTGCCCCTCCACC-CCCTTCCTC----CCTTGGAGCCTGCAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163382679 178 + 180432695 TCCAGGCTCTCGATGTCGGCCACGTTCACGTAGAAGAAAGGCTTGGACTCAGGAATGGTGCCCCCGATGCCAGGCAGTGAAACGTTGgccaagcagcagcagcagtacaCTGTGGGGACAGAGGAGGTGAGCGGGGAGGGTCTGCCCCTCCACC-CCCTTCCTC----CCTTGGAGCCTGCAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110415179 178 + 127223203 TCCAGGCTCTCGATGTCGGCCACGTTCACGTAGAAGAAAGGCTTGGACTCAGGAATGGTGCCCCCGATGCCAGGCAGTGAAACGTTGGCCAAGCAGCAGCAGCAGTACACTGTGGGGACAGAGGAGGTGAGTGGGGAGGGTCTGCCCCTCTACC-CCCTTCCTC----CCTTGGAGCCTGCAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23762909 179 - 128169293 TCCAGGCTCTCGATGTCAGCCACGTTCACGTAGAAGAAAGGCTTGGACTCAGGAATGGTGCCCCCAATGCCAGGCAGTGAGACGTTGGCCAGGCAGCAGCAGCAGTACACTGTGGGGACAGAGGCGGTGAGCTGGGAGGGTCTGTGCCTCCACTGCCCTTCCCC----TCTCAGAGCCTGCGG
i calJac3.chr8             I 895 I 416
s mm10.chr6                 40409364 180 + 149736546 TCCAGGCTCTCAATGTCAGCCACGTTCACATAGAAGAAAGGCTTGGACTCAGGGATGGTGCCCCCAATGCCAGGCAGGGACACATTGGCCAGACAACAGCAACAGTACACTGTAAGA--GGGGGACACCAGAGTGAGGAATTTTCCCTCCTGTT-CCCTTCTCCCCCACCCAAGACCAAGCAG
i mm10.chr6                C 0 C 0
s canFam3.chr16             52082590 158 -  59632846 TCCAGGCTCTCGATGTCGGCCACGTTCACGTAGAAGAAGGGCTTGGACTCGGGAATGGTGCCCCCGATGCCAGGCAGGGACACGTTGGCCAGACAGCAGCAGCAGTACACTG--GGGACGGGAG----------GGCGGGCCGGCC---------TCTGTCCTC----CCTTGTCGCCCGCTG
i canFam3.chr16            C 0 C 0

a score=39580.000000
s hg38.chr7_GL383534v2_alt     31980 11 +    119183 CTCAACACCTC
s panTro4.chr7             143132227 11 + 161824586 CTCAACACCTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138936384 11 + 157549271 CTCAACACCTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93073599 11 + 110113093 CTCAACACCTC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180972009 11 + 198365852 CTCAACACCTC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174717737 11 + 192294377 CTCAACACCTC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163382857 11 + 180432695 CTCACCACCTC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110415357 11 + 127223203 CTCAACACCTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23763504 11 - 128169293 CTCAACACCCC
i calJac3.chr8             I 416 C 0
s mm10.chr6                 40409544 11 + 149736546 GTCGATACCTC
i mm10.chr6                C 0 I 1724
s canFam3.chr16             52082748 11 -  59632846 CCCGCCCCGCC
i canFam3.chr16            C 0 C 0

a score=1492356.000000
s hg38.chr7_GL383534v2_alt     31991 491 +    119183 ---------TGCTCCAGGCTATC--------------TGGTGCTTC----------------------AGGATCCAGGTGGTCCTGGCGTTCTGAGGAGACTGGAGGTGGCAAGCCTTTTGGGGTGCCATGGCAGAAACTGACCCCTCAAGGTGACGTCAACAACGTGCTTCCCAAACCCAATAAACATTTCTCAGTCTTTCTCTAGCTGGTCTTGCTTAGAATTTGACCTTGTCAGAACTCCGGCCTCTGTAACCCTTGTGTCTTCCGGTTCCC-----CCTTCTGCCTGTCC-----CTCCCTAGTCCTT-TCTGTCCTTCCACCTTTCTGGTCCACTTCCTGTGCCTGGAACACCCCTCCACACTTGTACTTTCCCCAGGTAACGCTGTCCATCCTGGATATGAGTGCAGAAATAATCTACCACCCTCAAATCTTTATCTCCAGCTCAAACGCCCAC-AGGTCCCGACCCAGCTAGGCAGGGTGGGCAGACACCCCTGCTGTGAAGGTCTCAAGGCAGCACACCCTCATCACATCCCACACTAAC
s panTro4.chr7             143132238 491 + 161824586 ---------TGCTCCAGGCTATC--------------TGGTGCTTC----------------------AGGATCCAGGTGGTCCTGGCGTTCTGAGGAGACTGGAGGTGGCAAGCCTTTTGGGGTGCCATGGCAGAAACTGACCCCTCAAGGTGACGTCAACAACGTGCTTCCCAAACCCAATAAACATTTCTCAGTCTTTCTCTAGCTGGTCTTGCTTAGAATTTGACCTTGTCAGAACTCCGGCCTCTGTAACCCTTGTGTCTTCCGGTTCCC-----CCTTCTGCCTGTCC-----CTCCCTAGTCCTT-TCTGTCCTTCCACCTTTCTGGTCCACTTCCTGTGCCTGGAACACCCCTCCACACTTGTACTTTCCCCAGGTAACGCTGTCCATCCTGGATATGAGTGCAGAAATAATCTACCACCCTCAAATCTTTATCTCCAGCTCAAACGCCCAC-AGGTCCCGACCCAGCTAGGCAGGGTGGGCAGACACCCCTGCTGTGAAGGTCTCAAGGCAGCACACCCTCATCACATCCCACACTAAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138936395 489 + 157549271 ---------TGCTCTAGGCTATC--------------TGGTGCTTC----------------------AGGAACCAGGTGGTCCTGGCATTCTGAGGAGAC--GACGTGGCAAGCCTTTTGGGGTCCCATGGCAGAAACTGACCCCTCAAGGTGACGTCAACAACGTGCTTCCCAAACCCAATAAACATTTCTCAGTCTTTCTCTAGCTGGTCTTGCTTAGAATTTGACCTTGTCAGAACTCCGGCCTCTGTAACCCTTGTGTCTTCCAGTTCCC-----CCTTCTGCCTGTCC-----CTCCCTAGTCCTT-TCTGTCCTTCTACCTTTCTGGTCCACCTCCTGTGCCTGGAACGCCCCTCCACACTTGTACTTTCCCCAGGTAACACTGTCCATCCTGGATATGAGTGCAGAAATAATCTACCACCCTCAAATCTTTATCTCCAGCTCAAACGCCCAC-AGGTCCCGACCCAGCTATGCAGGGTGGGCAGACACCCCTGCTGTGAAGGTCTCAAGGCAGCACACCCTCATCACATCCTACACTAAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93073610 490 + 110113093 ---------GGCTCCAGGCTATC--------------TGGTGCTTC----------------------AAGAACCAGGTGGTCCTGGCATTCTGAGGAGACTGGAGGTGGCAAGCCTTTTGGGGTCCCATGGCAGAAACTGACCCCTCAAGGTGACGTCAGCAACGTGCTTCCCAAACCCAATAAACATTTCTCAGTC-TTCTCTAGCTGTTCTTGCTTAGAATTTGACCTTGTCAGAACTCCGGCCTCTGTAACCCTTGTGTCTTCTGGTTCCC-----CCTTCTGCCTGTCC-----CTCCCTAGTCCTT-TCTGTCCTTCCACTTTTCTGGTCCACCTCCTGTGCCTGGAACGCCCCTCCACACTTGTACTTTCCTCAGGTAATGCTGTCCCTCCCGGATATGAGTGCAGAAATAATCTACCACCCTCAAATCTTTATCTCCAGCTCAAACGCCCAC-ACGTCCTGACCCAGCTATGCAGGGTGGGCAGACACTCCTGCTGTGAAGGTCTCAAGGCAGCACACCCTCATCACATCCCACACTAAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180972020 491 + 198365852 ---------TGCTCTAGGCTATC--------------TGGTGCCTC----------------------AGGAGCCAGGTGGCCCTGGCATTCCGAGGAGACTGGAGGTAGCAAGCCTCTTTAGGTCCCACAGGAGAAACTGATCCCTCAAGGTGATGTCGGCAACATGCTTCCCAAACCCAATAAACATTTCTCAGTCTCTCTCTAGCTGGTCTTGCTTAGAATTTGACCTTGTCAGAACTCTGGCCTCTATAACCCTTGTGTCTTCTGGTTCCC-----CCTTCTGCCTGTCC-----CTCCCCAGTCCTT-TCTGTCCTTCCACCTTTCTGGTCCACCTCCTGTGTCTGGAACACCCCTCCACACTTGTACTTTCCCCAGGTAATGCTGTCCATCTCAGATATGAGTGCAGAAATAATCTATCTCCCTCAAATCTTTATCTCCAGCTCAAACGCCCAC-AGGTCCTGACCCAGCTATGCAGGGTGGGTGGACACCCCTGCTGTGACGGTCTCAAGGCAGCACACCCTCATCACATCCCACACTAAC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174717748 491 + 192294377 ---------TGCTCTAGGCTATC--------------TGGTGCCTC----------------------AGGAGCCAGGTGGCCCTGGCATTCTGAGGAGACTGGAGGTAGCAAGCCTCTTTAGGTCCCACAGGAGAAACTGATCCCTCACGGTGATGTCAGCAACATGCTTCCCAAACCCAATAAACATTTCTCAGTCTCTCTCTAGCTGGTCTTGCTTAGAATTTGACCTTGTCAGAACTCTGGCCTCTATAACCCTTGTGTCTTCTGGTTCCC-----CCTTCTGCCTGTCC-----CTCCCCAGTCCTT-TCTGTCCTTCCACCTTTCTGGTCCACCTCCTGTGTCTGGAACACCCCTCCACACTTGTACTTTCCCCAGGTAATGCTGTCCATCTCAGATATGAGTGCAGAAATAATCTATCTCCCTCAAATCTTTATCTCCAGCTCAAACGCCCAC-AGGTCCTGACCCAGCTATGCAGGGTGGGTGGACACCCCTGCTGTGAAGGTCTCAAGGCGGCACACCCTCATCACATCCCACACTAAC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163382868 491 + 180432695 ---------TGCTCTAGGCTATC--------------TGGTGCCTC----------------------AGGAGCCAGGTGGTCCTGGCATTCTGAGGGGACTGGAGGTAGCAAGCCTCTTTAGGTCCCACAGGAGAAACTGATCCCTCAAGGTGACGTCAGCAACATGCTTCCCAAACCCAATCAAcatttctcagtctctctctaGCTGGTCTTGCTTAGAATTTGACCTTGTCAGAACTCCAGCCTCTATAACCCTTGTGTCTTCTGGTTCCC-----CCTTCTGCCTGTCC-----CTCCCCAGTCCTT-TCTGTCCTTCCACCTTTCTGGTCCACCTCCTGTGTCTGGAACACCCCTCCACACTTGTACTTTCCCCAGGTAATGCTGTCCATCTCAGATATGAGTGCAGAAATAATCTATCTCCCTCAAATCTTTATCTCCAGCTCAAACGCCCAC-AGGTCCCGACCCAGCTATGCAGGGTGGGCGGACCCCCCTGCTGTGAAGGTCTCAAGGCAGCACACCCTCATCACATCCCACACTAAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110415368 491 + 127223203 ---------TGCTCTAGGCTATC--------------TGGTGCCTC----------------------AGGAGCCAGGTGGTCCTGGCATTCTGAGGAGACTGGAGGTAGCAAGCCTCTTTAGGTCCCACAGGAGAAACTGATCCCTCAAGGTGACGTCGGCAACACGTTTCCCAAACCCAGTAAACATTTCTCAGTCTTTCTCTAGCTGGTCATGCTTAGAATTTGACCTTGTCAGAACTCCGGCCTCTATAACCCTTGTGTCTTCTGGTTCCC-----CCTTCTGCCTGTCC-----CTCCCCAGTCCTT-TCTGTCCTTCCACCTTTCTGGTACACCTCCTGTGTCTAGAACACCCCTCCACACTTGTACTTTCCCCAGGTAATGCTGTCCATCTCAGATATGAGTGCAGAAATAATCTATCTCCCTCAAATCTTTATCTCCAGCTCAAACGCCCAC-AGGTCCTGACCCAGCTATGCAGGGTGGGCGGACACCCCTGCTGTGAAGGTCTCAAGGCAGCACACCCTCATCACATCCCACACTAAC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23763515 479 - 128169293 ---------TGCTCTAGGCCATC--------------TGGTGCCTC----------------------AGGAACCAGGTGGTCCAGGCATTCTGAGGACACTGGAGGTAGCAAGCCTTTTGGGGTCCCACAGCAGAAACTGACCCCTCAAGGTGATGTCAACAACGTGCTTACCAAACCAAATAAACATTTCTCAGTCTTTGTCTAGCTGGTCTTGCTTAGCATTTGACCTTGTTACAACTCCAGCCTCTAT-ACCCTTGTGTCTTCCAGTTCCT-----TCTTCTGCCTGTTC-----CTCCCCAGTCCTT-TCTGTCCTTCCACCTTTCTGATCCACCTCCTGTGCCTGGCACACCCCTCCTCACTTGTACTTTCCCCAGGTGATGCCGTCC----------TGGG-GAAAGTATAATCTATAGCCCTCAAATCTTTATCTCCAGCCCAAACGCCCAC-AGGTCCCAACCCAGCTATGCAGGGTGGACAAACACCCCTGCTGAGAAGGTCTCACGGCAGCACACCCTCGTCACGTCCCACATTAAC
i calJac3.chr8             C 0 I 10
s canFam3.chr16             52082759 440 -  59632846 CGGACAgtcccctccagggtcccctccagggACGCCGTGGAGCCTCTGCGCTCGGCCGGCCCACCCTGAGTCCCCAGCGGGCTCTGG----CCCAGGGGACAGGC----GCGAGCCTCTC-GGGCCCCGC-GCAGCGCCCGATCCC---AGGGGCCTCCCACGGTCCCCGTCCCACGTC------------CCCCGTC-----CTA---GGCCTTGC----------------TCATAGCTCCCGCC---------------TCGCCCGGTTCCCCCCCTCCTCCCGGCTGCCCCAGGTCCCCCAGGTCCGCATCTGTCCTCCCCGTTTGCTGCTTCCCGTCCTGGGGCTGCATCACCTCCCCTCCCTGGCACTCTCCCCGAGGGACGCCACCCCCCCCCCAGGTCACCGCCAG--------GCCGCGCTCAAGTC--TACCTCCAGGCAGCTTTCCCCCAAGGCCCCGACCCCACCGCACCAGAG-----------CCTGGTGT-----------------------TCACCCCGCACAACATCAAG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40409555 1724 + 149736546 I

a score=70743.000000
s hg38.chr7_GL383534v2_alt     32482 32 +    119183 -CTTATCAAGCCAGCCCCCGGCTCCTCCTCCGT--
s panTro4.chr7             143132729 32 + 161824586 -CTTATCAAGCCAGCCCCCGGCTCCTGCTCCGT--
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138936884 32 + 157549271 -CTTATCAAGCCAGCCCCGGGCTCCTCCTCAGT--
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93074100 32 + 110113093 -CTTATCAAGCCAGCCCCCGGCTCCTCCTCAGT--
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180972511 32 + 198365852 -CTTTTCAAGCCAGCCCCCGGCTGCTCCTCAGT--
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174718239 32 + 192294377 -CTTTTCAAGCCAGCCCCCGGCTGCTCCTCAGT--
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163383359 32 + 180432695 -CTTTTCAAGCCAGCCCCCAGCTGCTCCTCAGT--
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110415859 32 + 127223203 -CTTTTCAAGGCAGCCCCCGGCTGCTCCTCAGT--
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52083199 29 -  59632846 GCT------GTCACTCCCCGCTGGCTCCTCTGCGA
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40409555 1724 + 149736546 I
e calJac3.chr8              23763994 10 - 128169293 I

a score=236408.000000
s hg38.chr7_GL383534v2_alt     32514 74 +    119183 CCCCCATCTGGTGGCCCCACCACCCTTGTTATCCTAGACTCTGCTTCCACTGCAACCTCACACACATCAGAACC
s panTro4.chr7             143132761 74 + 161824586 CCCCCATCTGGTGGCCCCACCACCCTTGTTATCCTAGACTCTTCTTCCACTGCAACCTCACACACATCAGAACC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138936916 74 + 157549271 CCCCCATCTGGTGGCCCCACCACCCTTGTTATCCTAGACTCTTCTTCCACTGCAACCTCACACACATCAGAACC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93074132 74 + 110113093 CCCCCATCTGGTGGCCCCACCACCCTTGTTATCCTTGACTCTTCTTCCACTGCAACCTCACACACATCAGAACC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180972543 71 + 198365852 CCCCCATCTGGTGGCCCCACCACCCTTGTTATCCTAGACT---CTTCCGTTGCAGCCTCACACACATCAGAACC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174718271 71 + 192294377 CCCCCATCTGGTGGCCCCACCACCCTTGTTATCCTAGACT---CTTCCGTTGCAGCCTCACACACATCAGAACC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163383391 71 + 180432695 CCCCCATCTGGTGGCCCCACCACCCTTGTTATCCTAGACT---CTTCCGTTGCAGCCTCACACACATCAGAACC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110415891 71 + 127223203 CCCCCATCTGGTGGCCCCACCACCCTTGTTATCCTAGACT---CTTCCGTTGCAGCCTCACACACATCAGAACC
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40411279 70 + 149736546 CCCACTTCCGGTGGCCTCATGATCCTTATCATCCTAGACTCTTCTTCAACCATACCCCTGCATACTTCAG----
i mm10.chr6                I 1724 C 0
s canFam3.chr16             52083228 71 -  59632846 CCCCCACCTGGTGGCCCCACCATCCTCGTCATCCTGGACCCTGCGTCCACC---ACCTCGCACACATCAGAACC
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23763994 10 - 128169293 I

a score=4095.000000
s hg38.chr7_GL383534v2_alt     32588 1 +    119183 T
s panTro4.chr7             143132835 1 + 161824586 T
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138936990 1 + 157549271 T
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93074206 1 + 110113093 T
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180972614 1 + 198365852 T
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174718342 1 + 192294377 T
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163383462 1 + 180432695 T
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110415962 1 + 127223203 T
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23764004 1 - 128169293 T
i calJac3.chr8             I 10 C 0
s canFam3.chr16             52083299 1 -  59632846 T
i canFam3.chr16            C 0 I 242
e mm10.chr6                 40411349 0 + 149736546 C

a score=2158799.000000
s hg38.chr7_GL383534v2_alt     32589 603 +    119183 TTACAACCCAATCAGACAACAAGTTTTGTCCA--GTTTCTCTTAAATCCATCTAGAATGCATCTTCTCTGCTTTAATCCAG-------CCCTAATCTTTGGCCAGGCCACTGATGTG-----TCATCCAACCCATC---TTCTACATTGTCAACAGTGTTCACAGCCAATCAGTTCACTCCCGGGCTTAAAACCCCA--TCCCCTGGATGTGGCCCAAGCTCTTCCAAACTTGGTCAGTGACAGAAAGACTCAAGCAGTTTCTGCTCCAGG-GATTTAAG-CAGCACTCCTGACTCTGGCTTCTGGTTACCTCTATAGCACACCACGCCCACAGGTGGGGGAGAAAATATCAAAATGCGCTTTCGAAGTAAGGCAAATTTCCAGAGGATGAGGATCTGTTCTCCAAAGAACTTTATAAACTGAGACATGCAGCCAGCTGGGTGTGTGATCTGAAAAAATTGAGGGGAATAGG----GAG---GAGAAAGAGT-GAGGAACAGC------TTCTTAGAAATATAGCAAAAGGTATCTAA------------------------------------------------------------------------------------------------------TCTCCTTCT-CTGAAATTCTAAAGTCCATCCAAACAGATACATTAAAGGATGCTTATTTCCAC-ACACAAT--------GATGTTTTTCACTTTAAAAGTCTTACCTTTA
s panTro4.chr7             143132836 600 + 161824586 TTACAACCCAATCAG---ACAAGTTTTGTCCA--GTTTCTCTTAAATCCATCTAGAATGCATCTTCTCTGCTTTAATCCAG-------CCCTAATCTTTGGCCAGGCCACTGATGTG-----TCATCCAACCCATC---TTCTACATTGTCAACAGTGTTCACAGCCAATCAGGTCACTCCCGGGCTTAAAACCCCA--TCCCCTGGATGTGGCCCAAGCTCTTCCAAACTTGGTCAGTGACAGAAAGACTCAAGCAGTTTCTGCTCCAGG-GATTTAAG-CAGCACTCCTGACTCTGGCTTCTGGTTACCTCTATAGCACACCACGCCCACAGGTGGGGGAGAAAATATCAAAATGCGCTTTCGAAGTAAGGCAAATTTCCAGAGGATGAGGATCTGTTCTCCAAAGAACTTTATAAACTGAGACATGCAGCCAGCTGGGTGTGTGATCTGAAAAAATTGAGGGGAATAGG----GAG---GAGAAAGAGT-GAGGAACAGC------TTCTTAGAAATATAGCAAAAGGTATCTAA------------------------------------------------------------------------------------------------------TCTCCTTCT-CTGAAATTCTGAAGTCCATCCAAACAGATACATTAAAGGATGCTTATTTCCAC-ACACAAT--------GATGTTTTTCACTTTAAAAGTCTTACCTTTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138936991 603 + 157549271 TTACAACCCAATCAGACAACAAGTTTTGTCCA--GTTTCTCTTAAATACATCTAGAATGCATCTTCTCTGCTTTAATCCAG-------CCCTAATCTTTGGCCAGGCCACTGATATG-----TCATCCAACCCATC---TTCTACATTGTCACCAGCGTTCACAGCCAATCAGGTCACTCCCAGGCTTAAAACCCCA--TCCCCTGGATGTGGCCCAAGCTCTTCCAAACTTGGTCAGTGACAGAAAGACTCAAGCAGTTTCTGCTCCAGG-GATTTAAG-CAGCACCCCTCACTCTGGCTTCTGGTTACCTCTATAGCACACCACGCCCACAGGTGGGGGAGAAAATATCAAAATGCGCTTTCGAAGTAAGGCAAATTTCCAGAGGATGAGGATCTGTTCTCCAAAGAACTTTATAAACTGAGACATGCAGCCAGCTGGGTGTGTGATCTGAAAAAATTGAGGGGAATAGG----GAG---GAGAGAAAGT-GAGGAACAGC------TTGTTAGAAATATAGCAAAAGGTATCTAA------------------------------------------------------------------------------------------------------TCTCCCCCT-CCGAAATTCTAAAGTCCATCCAAACAGATACATTAAAAGATACTTATTTCCAC-ACAAAAT--------GATGTTTTTCACTTTAAAAGTCTTACCTTTA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93074207 591 + 110113093 TTACAACCCAACCAGACAAGAAGTTTTGTCCA--GTTTCTCTTAAATACATCTAGAATGCATCTCCTCTGCTTTAATCCAG-------CCCTAATCTTTGGCCAGGCCACTGATGTG-----TCATCCAACCCATC---TTCTACATTGTCACCCACGTTCACAGCCAATCAGGTCACTCCTGGGCTTAAAACCCCA--TCCCCTGGATGTGGCCCAAGCTCTTCCAAACTTGGGCAGTGACAGAAAGACTCAAGTGGTTTCTGCTCCAGG-G-------------CCCCTGACTCTGGCTTCTGGTTACCTCTATAGCACACCACGCCCACAGGTGGGGGAGAAAATATCAAAATGCGCTTTCGAAGTAAGGCAAATTTCCAGAGGATGAGGATCTGTTCTCCAAAGAACTTTATAAACTGAGACATGCAGCCAGCTGGGTGTGTGATCTGAAAAAATTGAGGGGAATAGG----GAG---GAGAAAGAGT-GAGGAACAGC------TTGTTAGAAATACAGCAAAAGGTATCTAA------------------------------------------------------------------------------------------------------TCTCTCCCT-CCGAAATTCTAAAGTCCATCCAAACAGATACATTAAAGGATGCTTATTTCCAC-ACACAAT--------GATGTTTTTCACTTTAAAAGTCTTGCCTTTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180972615 601 + 198365852 TTACAATCCAATCTG---ACAAGTTTTGTCCA--GTTTCTCTAAAATACATCTAGAATGCATCTTCTCTGCTTTAATCCAGA------CCCTAATCTTTGGCCACGCCACTGATGTG-----TCATCCAACCCATC---TTCTACATTGTCACCTGCGTTCACAGCCAATCAGGTCATTCCTGGGCTTAAAACCCCA--TCCCCTTGATGTGGCCCAAACTCTTCCAAACTTGATCAGTGACAGAAAGACTCAAGCAGTTTCTGCTCCAGG-GATTTAAG-CAGCACCCCTGACTCTGGCTTCTGGTTACCTCTATAGCACACCACGCCCACAGGTGGGGGAGAAAATATCAAAATGCGCTTTCGAAGTAAGGCAAATTTCCAGAGGATGAGGATCTGTTCTCCAAAGAACTTTATAAACTGAGACATGCAGCCAGCTGGGTGTGTGATCTGAAAAAATTGAGGGGAATAGG----GAG---GAGAAAGAGT-GAGGAACAGC------TTGTTAGAAATAGAGCTAAAGGTATCTAA------------------------------------------------------------------------------------------------------TCCTCACCT-CCGAAATTCTGAAGTCCATCCAAACAGATACATTAAAGGATGCTTATTTCCAC-ACAAAAT--------GATGTTTTTCACTTTAAAAGTCTTACCTTTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174718343 601 + 192294377 TTACAATCCAATCTG---ACAAGTTTTGTCCA--GTTTCTCTAAAATACATCTAGAATGCATCTTCTCTGCTTTAATCCAGA------CCCTAATCTTTGGCCACGCCACTGATGTG-----TCATCCAACCCATC---TTCTACATTGTCACCTGCGTTCACAGCCAATCAGGTCACTCCTGGGCTTAAAACCCCA--TCCCCTTGATGTGGCCCAAACTCTTCCAAACTTGATCAGTGACAGAAAGACTCAAGCAGTTTCTGCTCCAGG-GATTTAAG-CAGCACCCCTGACTCTGGCTTCTGGTTACCTCTATAGCACACCACGCCCACAGGTGGGGGAGAAAATATCAAAATGCGCTTTCGAAGTAAGGCAAATTTCCAGAGGATGAGGATCTGTTCTCCAAAGAACTTTATAAACTGAGACATGCAGCCAGCTGGGTGTGTGATCTGAAAAAATTGAGGGGAATAGG----GAG---GAGAAAGAGT-GAGGAACAGC------TTGTTAGAAATAGAGCTAAAGGTATCTAA------------------------------------------------------------------------------------------------------TCCTCACCT-CCGAAATTCTGAAGTCCATCCAAACAGATACATTAAAGGATGCTTATTTCCAC-ACAAAAA--------GATGTTTTTCACTTTAAAAGTCTTACCTTTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163383463 601 + 180432695 TTACAATCCAATCTG---ACAAGTTTTGTCCA--GTTTCTCTAAAATACATCTAGAATGCATCTTCTCTGCTTTAATCCAGA------CCCTAATCTTTGGCCACGCCACTGATGTG-----TCATCCAACCCATC---TTCTACATTGTCACCAGCGTTCACAGCCAATCAGGTCACTCCTGGGCTTAAAACCCCA--TCCCCTTGATGTGGCCCAAACTCTTCCAGACTTGATCAGTGACAGAAAGACTCAAGCAGTTTCTGCTCCAGG-GATTTAAG-CAGCACCCCTGACTCTGGCTTCTGGTTACCTCTATAGCACACCACGCCCACAGGTGGGGGAGAAAATATCAAAATGCGCTTTCGAAGTAAGGCAAATTTCCAGAGGATGAGGATCTGTTCTCCAAAGAACTTTATAAACTGAGACATGCAGCCAGCTGGGTGTGTGATCTGAAAAAATTGAGGGGAATAGG----GAG---GACAAAGAGT-GAGGAACAGC------TTGTTAGAAATAGAGCTAAAGGTATCTAA------------------------------------------------------------------------------------------------------TCCTCACCT-CCGAAATTCTGAAGTCCATCCAAACAGATACATTAAAGGATGCTTATTTCCAC-ACAAAAT--------GatgtttttcactttaaaagTCTTACCTTTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110415963 601 + 127223203 TTACAATCCAATCTG---ACAAGTTTTGTCCA--GTTTCTCTAAAATACATCTAGAATGCATCTTCTCTGCTTTAATCCAGA------CCCTAATCTTTGGCCACGCCACTGATGTG-----TCATCCGGCCCATC---TTCTACATTGTCACCAGCGTTCACAGCCAATCAGATCACTCCTGGGCTTAAAACCCCA--TCCCCTTGATGTGGCCCAAACTCTTCCAAACTTGATCGGTGACAGAAAGACTCAAGCAGTTCCTGCTCCAGG-GATTTAAG-CAGCACCCCTGACTCTGGCTTCTGGTTACCTCTATAGCACACCACGCCCACAGGTGGGGGAGAAAATATCAAAATGCGCTTTCGAAGTAAGGCAAATTTCCAGAGGATGAGGATCTGTTCTCCAAAGAACTTTATAAACTGAGACATGCAGCCAGCTGGGTGTGTGATCTGAAAAAATTGAGGGGAATAGG----GAG---GAGAAAGAGT-GAGGAACAAC------TTGTTAGAAATATAGCTAAAGGTATCTAA------------------------------------------------------------------------------------------------------TCCTCACCT-CCAAAATTCTGAAGTCCATCCAAACAGATACATTAAAGGATGCTTATTTCCAC-ACAAAAT--------GATGTTTTTCACTTTAAAAGTCTTCCCTTTA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23764005 605 - 128169293 TAATAACCCAATGAGACAACGGGTTTAATCCA--GTTTCTCTTAAATATATCTAGAATGCATCTTCTCTGCTTTAATCCAGA------CCCTAATCTTTGGCCAGACTACTGATGTG-----TCATCCAAGCCATC---TTCTACACCGTCACCACTGTTCACAGCCAGTCAGGTCACTCCTGGGCTCAAAACCCCA--TCCTCTTGATGTGACCCAAGCTCTTCCAAATTTGGTCAATGATACAAAGACTCAAGTAGTGTCTGCGCTCGT-GATTTAAG-CAGCACCCC-GTCTCTGGCTTCTGGTTACCTCTATAGCACACCACACCCACAGGTGGGGGAGAAAATATCAAAATGCGCTTTCGAAGTAAGGCAAATTTCCAGAGGATGAGGATCTGTTCTCCAAAGAACTTAATAAACTGAGACATGCAGCCAGCTGGGTGTGTGATCTGAAAAAATTGAGGGGAATGGG----GAG---GAAGAAGAGTGGAGGAACAGC------TTGTTAGAAATATAGCAGAAGATATCTAA------------------------------------------------------------------------------------------------------TCCCCTCCCACCGAAATTCTAAAGTACAACCAAACAGATACATTAAAGGATGTTTATTTCCAC-ACAAAAT--------GATGTTCTTCACTTTAGAAGTCTTACCTTTA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40411349 541 + 149736546 -------CTAACCTG------------ATCCA--GTTTACCT----CTTACCCACAATCCACCATTCCAGCTTCAACCCAGA------CACTTATCTCTTCGCAGA-TACTAAGGTAAGCCCCCTCCCCATCCATC---TT---CATTGCCTCCAGACTCTATACTC-------TTAATTCCCATCAGAAGCCTTGA--TCCCATTGAAATGGCCCAAACTCTTCCGAAGTTGGTCAACAACTAAAGGATGAGGGCA---TGTGTACTGGG-CATTTAGG-AAAAGCCCC--ACTTGGGCTACGGGTTACCTCTATAGCACACGACACCCACAGGTGGGGGAGAAAATATCAGAATGCGCTTTCGAAGTAAGGCGAACTTCCAAAGAATGAGGATCTGTTCTCCAAAGAACTTAATAAACTGAGACATACAGCCAGCAGGGTGTGTGATCTGGAAACAC------------------------ACAAGGACA-GGTGGACAGC------TTGTTAGA-----GGTTACCACTGTGAAA------------------------------------------------------------------------------------------------------CAGCCTTCTGTAAAAACTCCAAAGCACCAGCAA------GCATTAAGAGATAGTTGCTTCCAC-ACAAAACGATCATCGGATGCTTTACATTTT----------TCTTTA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52083542 722 -  59632846 TTATGACCCAATCACACGCCAACGTTTGCCAGATGTACCTCCTCAATGTATC-AGAATCCATCCTCCCTCCCC--ATCTACGCGCTCTCACCAGCCTCTGGCCGCACC-CCGAGCCA-----CCCTGTGCCCCGCCGGGGCCCACATT----CTAGAATCCACGTCCACCCCTGGCACTCCCAGGCTGAAAACGCAGGCTCCTCCTGCGACGGCCCAAAGTCTTCTGAACTTGGTCAACAATGCAAAGACTTGGGAAGTTTCTGCTCCAGGAGACTTAGGAAAGAAACCCCGGCTTTGGCTGCTACCTACCTCTATAGCACACGACACCCACAGGAGGGGGAGAAAATATCAAAATGCGCTTTCGAAGTAAGGCAAATTTCCAAAGGATGAGGATCTGTTCTCCAAAGAACTTGATAAACTGAGACATGCAGCCAGCCGGGTGTGTGATCTGGAAAAA---AGGGGAAGATGACACGAGCCTGTTAAAAACT-GTGAAAAAACAAAACAACACTAAaaatagataaataaataaataaataaataaataataaataaaaataataaaatttaaaagattaaaaaataaaaaatGTGAAAAACTCTTCAGTACCGCTGTGGGCTAAACCCGCCACCCCAACCCCCTGCCC-CCCAAGCTCCAGAGATCAACCAA-CAGATGCATTAAGGGATGGCTGCTTCCACAACAAAAT--------GGTATTTTTCACTTT-AAAGTCTCCCCTTCA
i canFam3.chr16            I 242 I 524

a score=504516.000000
s hg38.chr7_GL383534v2_alt     33192 157 +    119183 AACTGGATTTCTATAATACAACAGCT-CCCTGATACACTGATGTTTG-AGTTGAGTGATCAT---TATTTT--------ACTCAGGAGAACAATGCAAAGGAAACAAAGCTAAATTTAAATTTAAAAAAACCAGAATAAAAGCATCT---------------GCTTCAATAAGAAAACTCAACTC
s panTro4.chr7             143133436 157 + 161824586 AACTGGATTTCTATAATACAACAGCT-CCCTGATACACGGATGTTTG-AGTTGAGTGATCAT---TATTTT--------ACTCAGGAGAACAATGCAAAGGAAACAAAGCTAAATTTAAATTTAAAAAAACCAGAATAAAAGCATCT---------------GCTTCAATAAGAAAACTCAACTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138937594 172 + 157549271 AACTGGATTTCTATAATACAACAGCT-CCCTGATACACTGATGTTTG-AGTTGAGAGATCAT---TATTTT--------ACTCAGGAGAACAATGCAAAGGAAACAAAGCtaaatttaaatttaaaaaaatCAGAATAAAAGCATCTCTGAAGACACATTCCGCTTCAATAAGAAAACTCAACTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93074798 172 + 110113093 AACTGGATTTCTATAATACAACAGCT-CCCTGATACACTGATGTCTG-AGTTGAGAGATCAT---TATTTT--------ACTCAGGAGAAGAATACAAAGGAAACAAAGCTAAATTTAAATTTTAAAAAATCAGAATAAAAGCATCACTGAAGACACATTCCGCTTCAATAAGAAAACTCAACTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180973216 172 + 198365852 AACTGGATTTCTATAATACAACAGCT-CCCTGATACACTGATGTTTG-AGTTTAGAGATCAT---TCTTTT--------ACTCAGGAGAACAATGCAAAGAAAACAAAGCTAAATTCAAATTTTAAAAAATCAGAATAAAAGCATCTCTGAAGACACATTCTGCTTCAATAAGAAAACTCAACTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174718944 172 + 192294377 AACTGGATTTCTATAATACAACAGCT-CCCTGATACACTGATGTTTG-AGTTTAGAGATCAT---TCTTTT--------ACTCAGGAGAACAATGCAAAGAAAACAAAGCTAAATTTAAATTTTAAAAAATCAGAATAAAAGCATCTCTGAAGACACATTCTGCTTCAATAAGAAAACTCAACTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163384064 172 + 180432695 AACTGGATTTCTATAATACAACAGCT-CCCTGATACACTGATGTTTG-AGTTTAGAGGTCAT---TCTTTT--------ACTCAGGAGAAcaatgcaaagaaaacaaagctaaatttaaattttaaaaaatcagaataaaagcaTCTCTGAAGACACATTCTGCTTCAATAAGAAAACTCAACTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110416564 172 + 127223203 AACTGGATTTCTATAATACAACAGCT-CCCTGATACACTGATGTTTG-AGTTTAGAGATCAT---TCTTTT--------ACTCAGGAGAACAATGCAAAGAAAACAAAGCTAAATTTAAATTTTAAAAAATCAGAATAAAAGCATCTCTGAAGACACATTCTGCTTCAATAAGAAAACTCAACTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23764610 169 - 128169293 CACTGGATTTCTATAATATAATAGCT-CCCTGATACACTGATGTGTG-AGTTTAGGGATCAC---TATTTT--------ACTC---AGAATGGTGCAAAGAAAACAAAGCTGAATTTACATTTTGAAAAATCAGAATAAAAGTGTCTCTAAAGACACAGTCTGCTTCAATAAGAAAACTCAAATC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40411890 168 + 149736546 AACTGGATTTCTCCAATGCATCAGCTCCCCTGACAGAATGAAGTTAGAAATTTAAGGACTATAAACACTTTGGATAAACACTTTGGATAGAAATGAAGAGGAAAC--AGCTGAATTTTATTTCTTAAACtggggggggggggcaccc---------------actaggaaaagaagaagagggtt
i mm10.chr6                C 0 I 484
e canFam3.chr16             52084264 524 -  59632846 I

a score=380521.000000
s hg38.chr7_GL383534v2_alt     33349 130 +    119183 GAAAACATTACTAAGCACTGTTAAGTAATAACATGATGAGCAAACAGTCCCCAGTCAGATCCCAAATCTATGGGGGCTGCTACTGTGCAAAGTGAGGTGTCTGCAGAAGTCACAGGTAGGAAGGAGCCCC
s panTro4.chr7             143133593 130 + 161824586 GAAAACATTACTAAGCACTGTTAAGTAATAACATGATGAGCAAACAGTCCCCAGTCAGATCCCAAATCTATGGGGGCTGCTACTGTGCAAAGTGAGGTGTCTGCAGAAGTCATAGGTAGGAAGGAGCCCC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138937766 130 + 157549271 GAAAACATTACTAAGCACTGTTAAGTAATAACATGATGAGTAAACAGTCGCCAGTCAGATCCCAAGTCTATGGGGGCTGCTACTGTGCAAAGTGAGGTGTCTGCAGAAGTCACAGGTAGGAAGGAGCCCC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93074970 130 + 110113093 GAAAACATTACTAAGCACTGTTAAGTAATAACATGATGAGCAACCAGTCCCCAGTCAGATCCCAAATCTATGGGGGCTGCTACTGTGCAAAGTGGGGTGTCTACAGAAGTCACAGGTAGGAAGGAGCCCC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180973388 128 + 198365852 GAAAACATTACTAAGCACTG-TAAGTAATAACACAATGAGCAAACAGTCCCCAGTCAGATCCCAAATCTAC-AGGACTACTACTGTGCAAAGTGAGGTGTCTGCAGAAGTCACAGGTAGGAAGGAGCCCC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174719116 128 + 192294377 GAAAACATTACTAAGCCCTG-TAAGTAATAACACAATGAGCAAACAGTCCCCAGTCAGATCCCAAATCTAC-AGGACTACTACTGTGCAAAGTGAGGTGTCTGCAGAAGTCACAGGTAGGAAGGAGCCCC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163384236 128 + 180432695 GAAAACATTACTAAGCACTG-TAAGTAATAACACAATGAGCAAACAGTCCCCAGTCAGATCCCAAATCTAC-AGGACTACTACTGTGCAAAGTGAGGTGTCTGCAGAAGTCACAGGTAGGAAGGAGCCCC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110416736 128 + 127223203 GAAAACATTACTAAGCACTG-TAAGTAATAACACAATGAGCAAACAGTCCCCAGTCAGATCCCAAATCTAC-AGGACTACTACTGTGCAAAGTGAGGTGTCTGCAGAAGTCACAGGTAGGAAGGAGCCCC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23764779 129 - 128169293 GAAAACATTACTAAGCCCTG-TAAGTAATAACATGATGAACACGCAGTCCCCAGGCAGATCCCAAGTCTATGGGGACTGCTACTGTGCAAAGTGAGGTGTCTGCAGAGTCACCAGGTAGGTAGGAGCTCC
i calJac3.chr8             C 0 M 10
e mm10.chr6                 40412058 484 + 149736546 I
e canFam3.chr16             52084264 524 -  59632846 I

a score=165722.000000
s hg38.chr7_GL383534v2_alt     33479 65 +    119183 TGGCATAACCCCTGCTGCACTTCACCTCTGACCACTCTTCCttctttttttgagatggagtctga
s panTro4.chr7             143133723 65 + 161824586 TGGCATAATCCCTGCTGCACTTCACCTCTGACCACTCTTCCttctttttttgagatggagtctga
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138937896 65 + 157549271 TGGCATAATCCCTGCTGCACTTCACCTCTGACCACTCTTCCttctttttttgagatggagtctga
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93075100 65 + 110113093 TGGCATAATCCCTGCTGCACTTCACCTCTGACCACTCTTCCttctttttttgagatggagtctga
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180973516 65 + 198365852 TGGCATAATCCCTGCTACACTTCACCTCTGACCACTCTTCCttctttttttgagatggagtctca
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174719244 65 + 192294377 TGGCATAATCCCTGCTACACTTCACCTCTGACCACTCTTCCttctttttttgagatggagtctca
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163384364 65 + 180432695 TGGCATAATCCCTGCTACACTTCACCTCTGAccacccttccttctttttttgagatggagtctca
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110416864 65 + 127223203 TGGCATAATCCCTGCTACACTTCACCTCTGACCACTCTTCCttctttttttgagatggagtctca
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40412058 484 + 149736546 I
e canFam3.chr16             52084264 524 -  59632846 I
e calJac3.chr8              23764908 10 - 128169293 M

a score=712851.000000
s hg38.chr7_GL383534v2_alt     33544 232 +    119183 ctcactctgtcacccaggttggagtgc---tgtggcgtgatcttggctcactgcaacctcta-cctcctgggttt----gattttcctacctcagcctcccaagtagctggaattacaggcatgcaccaccatgcccggctaatttttgtatttttagtacagacagggtttcaccatgttggccaggctggctttgaactcctgacctcaactgattcgcccaccttggcctcccaaag
s panTro4.chr7             143133788 232 + 161824586 ctcactctgtcacccaggttggagtgc---tgtggcgcgatcttggctcactgcaacctcta-cctcctgggttt----gattttcctacctcagcctcccaagtagctggaattacaggcatgcaccaccatgcccggctaatttttgtatttttagtacagacagggtttcaccatgttggccaggctggctttgaactcctgacctcaagtgattcgcccaccttggcctcccaaag
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138937961 232 + 157549271 ctcactctgtcacccaggttggagtgc---tgtggcacgatcttggctcactgcaacctcta-cctcctgggttc----gattttcctacctcagcctcccaagtagctgggattacaggcatgcaccaccatgcccagctaattttcctctttttagtacagacagggtttcaccatgttggccaggctggctttgaactcctgacctcaagtgattcacccaccttggcctcccaaag
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93075165 232 + 110113093 ctcactctgtcacccaggttggagtgc---tgtggcatgatcttggctcactgcaacctcca-cctcctgggttc----aattttcctacctcagcctcccaagtagctgggattacaggcatgcaccaccatgcccggctaatttttgtatttttagtacagacagggtttcaccatgttggccaggctggctttgaactcctgacctcaagtgattcgcccaccttggcctcccaaag
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180973581 233 + 198365852 ctcactctgtcacccaggttggagtgc---tgtggcgtgatcttggctcactgcaacctccaccctcctgggttc----gattttcctccctcagcctctcaagtagctgggattacaggcgtccaccgccaagcccagctaatttttgtatttttagtacaaacagggtttcaacacattggccaagctggctttgaactcctgacctcaagtgattcacccaccttggcctcccaaag
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174719309 233 + 192294377 ctcactctgtcacccaggttggagtgc---tgtggcatgatcttggctcactgcaacctccaccctcctgggttc----gattttcctacctcagcctctcaagtagctgggattacaggcatgcaccgccaagcccagctaatttttgtatttttagtacaaacagggtttcaccacattggccaagctggctttgaactcctgacctcaagtgattcacccaccttggcctcccaaag
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163384429 233 + 180432695 ctcactctgtcacccaggttgaagtgc---tgtggcgtgatcttggctcactgcaacctccaccctcctgggttc----gattttcctacctcagcctcccaagtagctgggattacaggcatgcaccgccaagcccagctaatttttgtatttttagtacaaacagggtttcaccacattggccaagctggctttgaactcctgacctcaagtgattcacccaccttggcctcccaaag
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110416929 233 + 127223203 ctccctctgtcacccaggttggagtgc---tgtggcgtgatcttggctcactgcaacctccaccctcctgggttc----gattttcctacctcagcctcccaagtagctgggattacaggcatgcaccgccaagcccagctaatttttgtatttttagtacaaacagggtttcaccacattggccaagctggctttgaactcctgacctcaagtgattcacccaccttggcctcccaaag
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23764918 238 - 128169293 ctcactctgtcgtccaggctggagtgcagtagtggcatgatcttggctcactgcaacctcta-cctcctgggttcaagagattttcctaccgcagcctcccaagtagctgggattataggcatgcgccaccatgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggctttgaactcctgacctcaagtgacccgcccacttcagcctccc-aag
i calJac3.chr8             M 10 C 0
e mm10.chr6                 40412058 484 + 149736546 I
e canFam3.chr16             52084264 524 -  59632846 I

a score=406022.000000
s hg38.chr7_GL383534v2_alt     33776 130 +    119183 tgctgggattacaggcgtg--agccaccacgactggccCCACTCTTCCTTCTG----------TCACTAA----------CTGGCAACCCCTGAAT--TGCCTTCTAGGAA--CACTGAGCCAAGGAGTATC------ATAGGGGTTaagagcataagctct
s panTro4.chr7             143134020 130 + 161824586 tgctgggattacaggcgtg--agccaccacgactggccCCACTCTTCCTTCTG----------TCACTAA----------CTGGCAACCCCTGAAT--TGCCTTCTAGGAA--CACTGAGCCAAGGAGTATC------ATAGGGGTTaagagcataagctct
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138938193 130 + 157549271 tgctgggattacaggcgtg--atccaccatgactggccCCACTCTTCCTTCTG----------ACACTAA----------CTGGCAACCCCTGAAT--TGCCTTCTAGGAA--CACTGAGCCAAAGagtatc------ataggggttaagagcataagctct
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93075397 130 + 110113093 tgctgggattacaggcgtg--agccaccacaactggccCCACTCTTCCTTCTG----------ACACTAA----------CTGGCAACCCCTGAAT--TGCCTTCTAGGAA--CACTGAGCCAAGGagtatc------ataggggttaagagcataagctct
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180973814 130 + 198365852 ggctgagattacaggcatg--agccaccacgactggccCCACTCTTCCTTCTG----------ACACTAA----------CTGGCAACCCCTGAAT--TGCCTTCTGGGAA--CCCTGAGCCAAGGagtatc------ataggggttaagagcataagctct
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174719542 130 + 192294377 tgctgagattacaggcatg--agccaccacgactggccCCACTCTTCCTTCTG----------ACACTAA----------CTGGCAACCCCTGAAT--TGCCTTCTGGGAA--CCCTGAGCCAAGGagtatc------ataggggttaagagcataagctct
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163384662 130 + 180432695 tgctgagattacagacatg--agccaccacgactggccccACTCTTCCTTCTG----------ACACTAA----------CTGGCAACCCCTGAAT--TGCCTTCTGGGAA--CCCTGAGCCAAGGAGTATC------ATAGGGGTTAAGAGCATAAGCTGT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110417162 130 + 127223203 tgctgagattacaggcatg--agccaccacgactggccCCACTCTTCCTTCTG----------ACACTAA----------CTGGCAACCCCTGAAT--TGCCTTCTGGGAA--CCCTGAGCCAAGGAGTATC------ATAGGGGTTaagagcataagctct
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23765156 139 - 128169293 ttctgggattacaggcgtg--agccatagcg-ctggccCCACTCTTCCTTCTG----------ACACTAACTGCACAGGTCTGGCAACCCCTGAAT--TGCCTTCTAGGAA--CCCTGAGCCAAGGagtatc------agaggggttatgagcggaagctct
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40412542 147 + 149736546 TGCAGCAGTTACAGGCAAGGAGGGTACAACG----GCCCCATGACTCCCTCTGGTAAACTTCAACTCTAA----------CCAACTTCCTTGTAATGATAACTTCAGGGAGGCCCCCTCCCTGAGAGCTACCTTCTGGAAGGGACTTAAGAGTGTAAGCTT-
i mm10.chr6                I 484 C 0
e canFam3.chr16             52084264 524 -  59632846 I

a score=619109.000000
s hg38.chr7_GL383534v2_alt     33906 186 +    119183 gatcccaggaagagctgaattccaatcctggccctgccatttactaacagggagatctggggaaagttagctaatgtttccggttcactatccttaactgtgaaat---acggaatcatcacctacctcgtagggttactttaaggaccgcctgagacaaaacatg-------------aaat----agcacaTA---AAAATAGCCAA
s panTro4.chr7             143134150 186 + 161824586 gatcccaggaagagctgaattccaatcctggccctgccatttactaacagggagatctggggaaagttagctaatgtttccggttcactatccttaactgtgaaat---acggaatcatcacctacctcgtagggttactttaaggaccgcctgagacaaaacatg-------------aaat----agcacaTA---AAAATAGCCAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138938323 183 + 157549271 gatcccaggaagagctgcattccaatcctggccctgccatttactaacagggagatctggggaaagttagctaatgtttccggttcactatccttaactgtgaaat---acagaatcgtcacctacctcgtagggtta---taaggatcgcctgagacaaaacatg-------------aaat----agcacata---aaaagagccAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93075527 196 + 110113093 gatcccaggaagagctgaattccaatcctggccctgccatttactaacagggagatctggggaaagttagctaatgtttccggttcactatccttaactgtgaaat---acggaatcatcacctacctcgtagggtta---taaggaccgcctgagacaaaacatgaaatagcacataaaaat----agcacata---aaaatagccaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180973944 183 + 198365852 gatcccaggaagagctgaattccaatcctggccctgccatttactaacagggagatctggagaaagttagctaatgttttcagttcactatccttaactgtgaact---acggaatcatcacttaccttgtagggcta---taaggactgcatgagacaaaacatg-------------aaat----agcacata---aaaACAGCCAA
i rheMac3.chr3             C 0 I 10
s macFas5.chr3             174719672 183 + 192294377 gatcccaggaagagctgaattccaatcctggccctgccatttactaacagggagatctggagaaagttagctaatgttttcagttcactatccttaactgtgaact---acggaatcatcacttaccttgtagggcta---taaggactgcctgagacaaaacatg-------------aaat----agcacata---aaaacagCCAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163384792 183 + 180432695 GATCCCAGGAAGAGCTGAATTCCAATCCTGGCCCTGCCATTTACTAACAGGGAGATCTGGAGAAAGTTAGCTAATGTTTTCAGTTCACTATCCTTTACTGTGAACT---ACGGAATCATCACTTACCTTGTAGGGCTA---TAAGGACTGCCTGAGACAAAACATG-------------AAAT----AGCACATA---AAAACAGCCAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110417292 183 + 127223203 gatcccaggaagagctgaattccaatcctggccctgccatttactaacagggagatctggggaaagttagctaatgttttcagttcactatccttaactgtgaact---atggaatcatcacttaccttgtagggtta---taaggactgcctgagacaaaacatg-------------aaat----agcacata---AAAACAGCCAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23765295 180 - 128169293 gatcccaggaaaagctgaattccaatcctggcactgccacttactaacagggagatctggggaaagttagctaatgttactggttctctacccttatctatgaaat---aaggaatcatcacctacctcacagggttt---taaggaccgcctgagacaaaacatg-------------aaat----agcacata---aa---aGTCAA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40412689 172 + 149736546 --------GAGAAATTGCACT------CTGCCTCTGAAATCTGCTGACAGGGAAGCCTGGA-AAAGTGACCCAATGTTTCCAGTCTTCTTTCTTAGTCTGTATAATGAGACCAGACCATGGGTTACCTCACCCAGCT----TAAGGACAACCTGAGCCAAGACATG--------------AGT----GACTTACAGCTAGAACAGCCAA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52084788 179 -  59632846 GGCCCCCAGAAAAGCTGGATTCCCAT--GGGCTCTGCCACTCACTAAC-GGGAGGCCTCGGGAGAGC-GGCCAACACCTCGGGTCCACTCCCCTGACCTGCGAAA----GGGGGACCATCCCGTTCCTCACGCGGCT----CTAGGACCAGCTGAG--GACACATG-------------ACCTGCTCAGCGCTCA---GGAGCTGCTGG
i canFam3.chr16            I 524 C 0

a score=-3012.000000
s hg38.chr7_GL383534v2_alt     34092 28 +    119183 TATGGGGTGGCCACTACTGTTGCTTTGA
s panTro4.chr7             143134336 28 + 161824586 TATGGGGTGGCCACTACTGTTGCTTTGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138938506 28 + 157549271 TATGGGATGGCCACTACTGTTGCTCTGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93075723 28 + 110113093 taTGAGGTGGCCACTACTGTTGCTTTGA
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174719855 10 + 192294377 --------AGCTATTTTT----------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163384975 10 + 180432695 --------GGCTATTTTT----------
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110417475 10 + 127223203 --------GGCTATTTTT----------
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23765475 27 - 128169293 TATGGGGCGACCACTGCTGTTACTGGC-
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40412861 26 + 149736546 TACATAGAAAATACCGGCGTCACTGG--
i mm10.chr6                C 0 I 1
s canFam3.chr16             52084967  8 -  59632846 ---AACGGGGC-----------------
i canFam3.chr16            C 0 C 0
e rheMac3.chr3             180974127 10 + 198365852 I

a score=242196.000000
s hg38.chr7_GL383534v2_alt     34120 86 +    119183 AAAACAGAAAGGCTTCAAACCCTGGGCCT---------TGTGAGCTTTGTGAAAGGTCATTTCCATGCCAAAGTGCCAGAAGAA--AGA--GCTCATCA--
s panTro4.chr7             143134364 86 + 161824586 AAAACAGAAAGGCTTCAAACCCTGGGCCT---------TGTGAGCTTTGTGAAAGGTCATTTCCATGCCAAAGTGCCAGAAGAA--AGA--GCTCATCA--
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138938534 86 + 157549271 AAAACAGGAAGGCTTCAAACCCTGGGCCT---------TGTAAGCTTCGTGAAAGGTCATTTCCATGCCAAAGTGCCAGAAGAA--AGA--GCTCATCA--
i ponAbe2.chr7             C 0 I 15547
s nomLeu3.chr13             93075751 85 + 110113093 AAAACAGAAAGGCTTCAAACCCT-GGCCT---------CGTGAGCTTTGTGAAAGGTCATTTCCATGCCAAAGTGCCAGAAGAA--AGA--GCTCATCA--
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180974137 95 + 198365852 AGAACAGAAAGGCTTCAAACCCCAGGCCTCACAAACCCCGTAAGCTTTGTGAAAGGTCACTTCCATGCCAAAGTGCCAGAAGTA--AGA--GCTCATCA--
i rheMac3.chr3             I 10 C 0
s macFas5.chr3             174719865 95 + 192294377 AGAACAGAAAGGCTTCAAACCCCAGGCCTCACAAACCCCGTAAGCTTTGTGAAAGGTCACTTCCATGCCAAAGTGCCAGAAGTA--AGA--GCTCATCA--
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163384985 95 + 180432695 AGAACAGAAAGGCTTCAAACCCCAGGCCTCACAAACCCCGTAAGCTTTGTGAAAGGTCACTTCCATGCCAAAGTGCCAGAAGTA--AGA--GCTCATCA--
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110417485 95 + 127223203 AGAACAGAAAGGCTTCAAACTCCAGGCCTCGCAAACCCCGTAAGCTTTGTGAAAGGTCACTTCCATGCCAAAGTGCCAGAAGTA--AGA--GCTCATCA--
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23765502 77 - 128169293 AAAACAGAAAGGCTTCAAACCCTGTGCCT---------CGTGAGCTTTGTGAAAGGTCACTTCCATGCTGACATGCCAGATGTA--AG-------------
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40412888 85 + 149736546 AGACTAG--AGGCTTCAAGTCAGAGGCCT----------GTGAGTACTTCAGAAAGCTACTTTGATACTTAGCTGTTGGCATTA--AGAGTGTTCATCT--
i mm10.chr6                I 1 C 0
s canFam3.chr16             52084975 72 -  59632846 ------------------CCCCTGGCCCT---------GGGGAGTGCTCGGGGAGGGCCCGTCCACACTCGCGTGTCAGAAGCACTAGT--GCACACCCCC
i canFam3.chr16            C 0 C 0

a score=84564.000000
s hg38.chr7_GL383534v2_alt     34206 27 +    119183 CCCATCAGGGAGGCAGGCAAGAGCACT
s panTro4.chr7             143134450 27 + 161824586 CCCATCAGGGAGGCAGGCAAGAGCACT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138954167 27 + 157549271 CCCTTCAGGGAGGCAGGCAAGAGCACT
i ponAbe2.chr7             I 15547 T 15458
s nomLeu3.chr13             93075836 27 + 110113093 CCCATCAGGGAGGCAGGCAGGAGCACT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180974232 27 + 198365852 CCCATTAGGGAGGCAGGCAAGAGCACT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174719960 27 + 192294377 CCCATTAGGGAGGCAGGCAAGAGCACT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163385080 27 + 180432695 CCCATTAGGGAGGCAGGCAAGAGCACT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110417580 27 + 127223203 CCCATCAGGAAGGCAGGCAAGAGCACT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23765579 19 - 128169293 --------GCAGACAGACAAAAACACT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40412973 27 + 149736546 GCCATACGAAAGGTGGGCCAGCCAAGT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52085047 27 -  59632846 CCCCCCGGGGGCGCTGGCGAGAGCCCC
i canFam3.chr16            C 0 C 0

a score=1454473.000000
s hg38.chr7_GL383534v2_alt     34233 479 +    119183 TCTGAGAGAGGCACCGACTCTCGGGCTGCGTGCTAGGGTTTAACAACCACCAGCCTTCAGAGGCACCTATAC-----CCGAGCCTCAGGGCAGCCTCTGCACTCTGCCTGTCCAAGCCAGGGCTGTCCTGGACCCTCCGAAGCTGTGTCTGCACTACCCGG-AGAGGATTTCCCTTTCCAAGGCA----TCACTCCTGCACTGATACC--ATTCCCCTACCCCATGCCAGGATAAAGGCGACCCTGAA--CTGAACATGTCCTGTTTGCCACCCACGCCTACTCCTCTGCCACCGCAACCCA---AATCATGAGGAGGAGAGGCACCAAGTGACCAAGGCTGGTTGCATCCCTCCAATCGCTATTTCTCTTCAAAGTC-TAACAGCAACCAGATAGGAAAGGGTGCCAAAGCACGTGCCGGTTCCTCCCAGCTTTCCCACTGGTTATCTTCAAGCTCCCAACTTGTTCTTCCACCACACAGAGGCCAGGTGGGGCTT
s panTro4.chr7             143134477 479 + 161824586 TCTGAGAGAGGCACCGACTCTCGGGCTGCGTGCTAGGGTTTAACAACCACCAGCCTTCAGAGGCACCTACAC-----CCGAGCCTCAGGGCAGCCTCTGCACTCTGCCTGTCCAAGCCAGGGCTGTCCTGGGCCCTCCGAAGCTGCGTCTGCACTACCCGG-AGAGGATTTCCCTTTCCAAGGCA----TCACTCCTGCATTGATACC--ATTCCCCTACCCCATGCCAGGATAAAGGCGACCCTGCA--CTGAACATGTCCTGTTTGCCACCCATGCCTACTCCTCTGCCACTGCAACCCA---AATCATGAGGAGGAGAGGCACCAAGTGACCAAGGCTGGTTGCATCCCTCCAATCGCTATTTCTCTTCAAAGTC-TAACAGCAACCAGATAGGAAAGGGTGCCAAAGCACACGCCGGTTCCTCCCAGCTTTCCCACTGGTTATCTTCAAGCTCCCAACTTGTTCTTCCACCACACAGAGGCCAGGCGGGGCTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138938736 477 + 157549271 TCTGAGAGAGGCACTGACTCTCGGGCTGCGTGCTAGGGTTTAACAACTACCAGCCTTCAGGGGCA-CTACA------CTGAGCCTCAGGGCAGCCTCTGCACTCTGCCTGTCCAAGCCAGGGCTGTTCTGGGCCCTCCGAAGCTGCGTCTGCACTACCCGG-AGAGGATTTCCCTTTCCAAGGCA----TCACTCCTGCACTGATACC--ATTCCCCTACCCCATGCCAGGATAAAGGCGACCCTGCA--CTGAACATGTCCTGTTTGCCACCCATGCCTACTCCTCTGCCACCACATCCCA---AATCACGAGGAGGAGAGGCACCAAGTGACCAAGGCTGGTTGCATCCCTCCAATCACTATTTCTCATCAAAGTC-TAACAGCAACCAGATAGGAAAGGGTGCCAAAGCACGCCCCGGTTCCTCCCAGCTTTCCCACTGGTTATCTTCAAGCTCCCAACTTATTCTTCCACGACACAGAGGCCAGGTGGGGCTT
i ponAbe2.chr7             T 15458 C 0
s nomLeu3.chr13             93075863 479 + 110113093 TCTGAGAGAGGCACCGACTCTCAGGCAGCGTGCTAGGGTTTAACAACTACTAGCCTTCAGGGGCACCTACAC-----CCGAGCCTCAGGGCAGCCTCTGCACTCTGCCTGTCCAAGCCAGGGCTATCCTGGGCCCTCCGAAGCTGCGTCTGCACTACCCCG-AGAGGATTCCCCTTTCTAAGGCA----TCACTCCTGCACTGATACC--ATTCTCCTATCCCATGCCAGGATAAAGGCAACCCTGCA--CTGAACATGTCCTGTTTGCCACCCATGCCTACTCCTCTGCCACCACATCCCA---AATCATGAGGAGGAGAGGCACCAATTAACCAAGACTGGTTGCTTCCCTCCAATCACTACTTCTCATCAAAGTC-TAACAGCAACCAGATAGGAAAGGGTGCCAAAGCACGCCCCAGTTCCTCCCAGCTTTCCCACTGGTTATCTTCAAGCTCTCAACTTGTTCTTCCACCACACAGAGGCCAGGCGGGGCTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180974259 478 + 198365852 TCTGAGAGAGGCACCGACTCCCAGGCTGCCTGCTAGGGTTTAACAACTACCAGCCTTCGGGGGCACCTACAC-----CCGAGCCTCAGGGCAGCCTCTGCACTCTGCCTGTCCAGGTCAGGGCTGTCCTGGGCCCTCCGAAGCTGCATCTGCAGTACCCAG-AGAGGATATCCCTTTCCAAGGCA----TCACTCCTGCACTGATACC--ACTTCCCTACCCCATGCCAGGATAAAGGCAACCTTGCG--CTGAGCATG--CCATTTGCCACCCATGCCTACTCCTCTGCCACCACATCCCA---AATCATGAGGAGGAGAGGCACCAAGTGACCAAGGCTGGTTGCATCCCTCCAATCACTATCTCTCATCAAAGTCTTAACAGCAATCAGATAGGAAAGGGCGCCAAAGCATGCCCCGGTTCCTCCCAGCTTTCCCACTGGTTATCTTCAAGCGTCCAACTTGTTCTTCCACCACATGGAGGCCAGGCAGGGCTC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174719987 478 + 192294377 TCTGAGAGAGGCACCGACTCCCAGGCTGCCTGCTAGGGTTTAACAACTACCAGCCTTCGGGGGCACCTACAC-----CCGAGCCTCAGGGCAGCCTCTGCACTCTGCCTGTCCAGGTCAGGGCTGTCCTGGGCCCTCCGAAGCTGCATCTGCAGTACCCAG-AGAGGACATCCCTTTCCAAGGCA----TCACTCCTGCACTGATACC--ACTTCCCTACCCCATGCCAGGATAAAGGCAACCTTGCG--CTGAGCATG--CCATTTGCCACCCATGCCTACTCCTCTGCCACCACATCCCA---AATCATGAGGAGGAGAGGCACCAAGTGACCAAGGCTGGTTGCATCCCTCCAATCACTATCTCTCATCAAAGTCTTAACAGCAATCAGATAGGAAAGGGCGCCAAAGCATGCCCCGGTTCCTCCCAGCTTTCCCACTGGTTATCTTCAAGCGTCCAACTTGTTCTTCCACCACATGGAGGCCAGGCAGGGCTC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163385107 478 + 180432695 TCTGAGAGAGGCACCGACTCCCAGGCTGCCTGCTAGGGTTTAACAACTACCAGCCTTCGGGGGCACCTACAC-----CCGAGCCTCAGGGCAGCCTCTGCACTCTGCCTGTCCAGGTCAGGGCTGTCCTGGGCCCTCTGAAGCTGCATGTGCAGTACCCAG-AGAGGATATCCCTTTCCAAGGCA----TCACTCCTGCACTGATACC--ATTTCCCTACCCCATGCCAGGATAAAGGCAACCTTGCG--CTGAGCATG--CCATTTGCCACCCATGCCTACTCCTCTGCCACCACATCCCA---AATCATGAGGAGGAGAGGCACCAAGTGACCAAGGCTGGTTGCATCCCTCCAATCACCATCTCTCATCAAAGTCTTAACAGCAATCAGATAGGAAAGGGCGCCAAAGCATGCCCCGGTTCCTCCCAGCTTTCCCACTGGTTATCTTCAAGCGTCCAACTTGTTCTTCCACCACATGGAGGCCAGGCAGGGCTC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110417607 478 + 127223203 TCTGAGAGAGGCACCGACTCCCAGGCTGCCTGCTAGGGTTTAACAACTACCAGCCTTCGGGGGCACCTACAC-----CTGAGCCTCAGGGCAGCCTCTGCACTCTGCCTGTCCAGGTCAGGGCTGTCCTGGGCCCTCCGAAGCTGCATCTGCAGTACCCGG-AGAGGATATCCCTTTCCAAGCCA----TCACTCCTGCACTGATACC--ATTTCCCTACCCCATGCCAGGATAAAGGCAACCCTGCG--CTGAGCATG--CCATTTGCCACCCATGCCTACTCCTCTGCCACCACATCTCA---AATCAGGAGGAGGAGAGGCACCAAGTGACCAAGGCTGGTTGCATCCCTCCAATCACTATCTCTCATCAAAGTCTTAACAGCAATCAGATAGGAAAGGGCGCCAAAGCATGCCCTCATTCCTCCCAGCTTCCCCACTGGTTATCTTCAAGCGTCTAACTTGTTCTTCCACCACATGGAGGCCAGGCAGGGCTC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23765598 478 - 128169293 TCTGAGAGAGGCACCGACTCCTGAGCTGCATGCTAGGGTTTCAGAACTACCAGCCTTTAGGGGCACCTACAC-----CCGAGCCTTGAGGCAGCCTCTGCATTCTGCGGGTCCAGGCCAAGGCTGTCCTGGGCCTTCCGAAGCCATGGCTGTACCACACGA-AGAGGATTTCCCTTTCCAAGGTG----CCACTCCTGCACTGATACC--ATTCCCCTACCACATGCCAGGATAAATGTGACCCCGCG--CTGAGCGTGCCCTGTTTGCCACCCATGCCTACTATTCTGCCACCACATCCCA---AATCACGAGGAGGAGAGGCATCAAGTGACCAAGGCTGGTCCCATCCCTCCCATCACTGTCTCTCATCAAAGCC-TAACAGCAACCAGAAAGGTAAGGGTGCCAAAGCACGC-CTGGTTCCTCCCAGCTTTTCCACTGGTTATCTTCAAGCACCCAACTTGTCCTTCCACTACACGGAGGCCACGTGGGGCTC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40413000 474 + 149736546 TCTGAAGGTGG-GCAGCTCTCTAAAGTACACACTGAGTTTAATAGGCTGAGAGATGCGTGGAGCACCCACGCACTAAGCCAGCCCTGGGGCAGCCCCTGCACTCTGCCTCCACTA------ACTGTCCTCCATC-TCCAAAGCTTCGACTAGACTACTTAGTGGAGGAATTTTCCTTTCAAAGCAACCTCCACCCTCCACCTGACACTCAATTCACCAGCCCCATGCTGCATACACAGCCACCCTCCTTCCCAAGCATGACCACTGTGACTCTTGGCCCATTTCCTCT----CCATATGTCATTCAGTCACCAGGAGAGAGGACTCACGTTGAGCAAGACTGGTCAGATCTCTTCAGTCACTATCTTCTATCGAGACA--AACAGCAGACAGACAAG-AAGGCAGCCAGAGCACAACCC-ACTCCTCCCTACCTTCCTTCT-GCCATCTTTAGGCCTTTGGCATA------CATTACACACAGGTCTGATGGGGCTT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52085074 282 -  59632846 ------AGAGG-----------------------------------------------AGCGGCGCCCAC-C-----CCAAG--------------CTGCGCTGGGCTTG--CTGGCTGGGA--GCCCTGGGTCCTCC------------------CGCAG-GGGG----------------------------------------CC--TCCCCCTTGCCCCCCGTCAGCAGAAAGGGGAGATCCCT--C-----------------------------------------CCAGATCTCC-------------GGGGGAGGCGCGGAGCCACCAGCCATCGTCGGGCTCCTCCAATCCCAATCTTGCACCCGAGTC-TGGAGGCCAAGAGACAGGAAGGGGAGGCCGGGC-----CCCCCGCCCCCCAACTT-----ATGTTTTTTTTTA----------TTCTTTTTCTACTGCATTCAAGTCTGGCAGGGTTT
i canFam3.chr16            C 0 I 1187

a score=50275.000000
s hg38.chr7_GL383534v2_alt     34712 17 +    119183 GCCCAATGTATATTtta
s panTro4.chr7             143134956 17 + 161824586 GCCCAATGTATATTtta
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138939213 17 + 157549271 GCCCAATGTATATTtta
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93076342 17 + 110113093 GCCCAATGTATATTtta
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180974737 17 + 198365852 GCCCAGCGTATATTtta
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174720465 17 + 192294377 GCCCAGCGTATATTtta
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163385585 17 + 180432695 GCCCAGCGTATATTTTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110418085 17 + 127223203 GCCCAGCGTATATTtta
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23766076 17 - 128169293 ACCCAATGTTTATTtta
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40413474 16 + 149736546 GGGCAA-GTGTGTCCTA
i mm10.chr6                C 0 I 1652
e canFam3.chr16             52085356 1187 -  59632846 I

a score=491246.000000
s hg38.chr7_GL383534v2_alt     34729 169 +    119183 taggctagtgggaga-----------aagcgattaaaatatagcctgac-agagccatgatgggagaagaatggggcatggtggagcaaactggagggtgcctgatcccactctaggagagacagaaaagacttcctgggggaagtgatgttgaagcttcgacataaagatgaatctgagg
s panTro4.chr7             143134973 169 + 161824586 taggctagtgggaga-----------aagcaattaaaatatagcctgac-agagccatgatgggagaagaatggggcttggtggagcaaactggagggtgcctgatcccactctaggagagacagaaaagacttcctgggggaagtgatgttgaagctttgacataaagatgaatCTGAgg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138939230 180 + 157549271 taggctagtgggagacacaggtaaacacgcaattaaaatatagcctgacgggagccatggtgagatacgaatgggg-ttggtggagcaaactggagggtgcctgattccactctaggagagacagaaaagacttcctgggggaagtgatgttgaagcttcgacataaagatgaatctgagg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93076359 181 + 110113093 taggctactgggagaaacaggtaaacaagcaattaaaatatagcctgacgggagccatgatgggaggagaatgggggttggtggagcaaactggagggtgcctgatcccactctaggagagacagaaaagacttcctgggggaagtgatgttgaagcttcgacataaagatcaatctgagg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180974754 180 + 198365852 taggttagtgggagaaacaggtaaacaagcatttaaaatacagcctgatgggagccgtgatgggagaagaatgggggttggtggagcaaaccaga-ggtgcctcatcccactctaggacagacagaaaagacttcctgggggaagtgatgttgaagctttgacataaagatgaatctgagg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174720482 180 + 192294377 taggttagtgggagaaacaggtaaacaagcatttaaaatacagcctgatgggagccgtgatgggagaagaatgggggttggtggagcaaaccaga-ggtgcctcatcccactctaggacagacagaaaagacttcctgggggaagtgatgttgaagctttgacataaagatgaatctgagg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163385602 180 + 180432695 TAGGTTAGTGGGAGAAACAGGTAAACAAGCATTTAAAATACAGCCTGATGGGAGCCGTGATGGGAGAAGAATGGGGGTTGGTGGAGCAAACCAGA-GGTGCCTCATCCCACTCTAGGACAGACAGAAAAGACTTCCTGGGGGAAGTGATGTTGAAGCTTTGACATAAAGATGAAtctaagg
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110418102 181 + 127223203 taggttagtgggagaaacaggtaaacaagcatttaaaatacagcctgatgggagccgtgatgggagaagaatgggggttggtggagcaaaccagagggtgcctcatcccactctaggagagacagaaaagacctcctgggggaagtgatgttgaagctttgacataaagatgaatctgagg
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23766093 176 - 128169293 taggctagt-ggagatacaggtaaacaagcttttaaaatatagcctgatgggagccgtgatgcgagaagaatgggggttgggggagcaaactggacggtgcctgatcccattcta-gagagacaaaaaagacttcccggaggaagtgatgttg-agctttgacat--agatgaatctgagg
i calJac3.chr8             C 0 I 66
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52085356 1187 -  59632846 I

a score=714949.000000
s hg38.chr7_GL383534v2_alt     34898 308 +    119183 ccgggtgctgtgactcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggagttcaagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggtgtggtgtcgcgtgcctgtaatcccagctacttgggaggctgaggcagaagaattgcttgaatctgggaggcagaggttgcagtcagttgagatcacaccactgccctccagcctgggcaacaatgcgagact--gtctcaaaacaaacaaacaaacaac--aaac---aaaaaca
s panTro4.chr7             143135142 305 + 161824586 ccgggtgctgtgactcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggagttgaagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggtgtggtgtcgcatgcctgtaatcccagctacttgggaggctgaggcagaagaatcgcttgaatctgggaggcagaggttgcagtcagttgagatcgcaccactgccctccagcctgggcaacaatgcgagact--gtctcaaaacaaacaaaca---aac--aaac---aaaAACA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138939410 305 + 157549271 ccgggcgctgtgactcatgcctgttatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggagttcaagaccagcctggtcaacatggtgaaatcccatctctactaaaaatacaaaaaattagccgggtgtggtgtcgcgtgcctgtaatcccagctactcgggaggctgaggcagaagaatcgcttgaacctgggaggcagaggttgcagtcagttgagatcgcaccactgccctccagcctgggtgacaatgcgagact--gtctcaaaacaaacaaata---aac--aaac---aaaaaca
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93076540 307 + 110113093 ccgggcgccgtgactcatgcctgtaatcccagcactttgggaggctgaggtgggtggatcacaaggttaggagttcaagaccagcctggtcaacatggtgaaaccccatttctactaaaaatacaaaaaattagctgggtgtggtgtcgcgtgcctgtaatcccagctactcgggaggttgaggcaggagaatcgcttgaatctgggaggcggaggttgcagtcagttgagattacaccactgccctccagcctgggcgacaatgtgagact--gtctcaaaacaaacaaaca---aacaaaaac---aaaaaca
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180974934 307 + 198365852 ctgggcgctgtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacaaggtcaggagttcaagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggtgtggtgtcgtgtgcctgtaatcccagctacttgggaggctgaggcagaagaatcactagaacctgggaggcagaggttgcagtcagttgagatcgtgccactgaactccagcctgggcgacaatgcaagactccgtctcaaaacaaacaa------aac--aaactaaaaaaaca
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174720662 303 + 192294377 ctgggcgctgtggctcacacctgtaatcccagcactttgggaggccgaggtgggcagatcacaaggtcaggagttcaagaccagcctggtcaacatggtgacaccccatctctactaaaaatacaaaaaattagctgggtgtggtatcgtgtgcctgtaatcccagctacttgggaggctgaggcagaagaatcactagaacctgggaggcagaggttgcagtcagttgagatcgtgccactgcactccagcctgggcgacaatgcaagactccgtctca----aaacaa------aac--aaactaaaaaaaca
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163385782 307 + 180432695 ccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacaaggtcaggagttcaagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggtgtggtgtcatgtgcctgtaatcccagctacttgggaggctgaggcagaagaatcgctagaacctgggaggcagaggttgcagtcagttgagatcgtgccactgcactccagcctgggcgacaatacaagactccgtctcaaaacaaacaa------aac--aaacgaaaaaaaca
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110418283 307 + 127223203 ctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacaaggtcaggagttcaagaccagcctggtcaacatggtgaaaccccacctctactaaaaatacaaaaaattagctgggtgtggtgtcgtgggcctgtaatcccagctacttggtaggctgaggcagaagaatcgctagaacctgggaggcagaggttgcagtcagttgagatcgtgccactgcactccagcctgggcgacaatgcaagactccgtctcaaaacaaacaa------aac--aaactaaaaaaaca
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52085356 1187 -  59632846 I
e calJac3.chr8              23766269  66 - 128169293 I

a score=13752.000000
s hg38.chr7_GL383534v2_alt     35206 4 +    119183 gatg
s panTro4.chr7             143135447 4 + 161824586 GATG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138939715 4 + 157549271 gatg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93076847 4 + 110113093 gatg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180975241 4 + 198365852 gatg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174720965 4 + 192294377 gatg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163386089 4 + 180432695 GATG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110418590 4 + 127223203 gatg
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52086543 4 -  59632846 gatg
i canFam3.chr16            I 1187 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e calJac3.chr8              23766269 66 - 128169293 I

a score=1828117.000000
s hg38.chr7_GL383534v2_alt     35210 606 +    119183 aatctgagggaaggtgttc----------------acatacaaaggcctgcaggtaagaggcaacatggcccttcttgggacctgcaagtagttcagGCCCTGTGCCCAGGCCCATGCCA-GGGAAGCACTGC---------CCACAGGGCCACCTCCTTTCTTCTAAAAGGGTCAGCTCTAGAGACTTCTCACCCCTTCTCAC-------------CTGCACATGCAACAGAAATTCCTCCTGCTTTCATTGAAATCTCTTTCCC-TTTTTCCAGCCTTGTTTCTC--T---GG--CTTTTACAGAGAAATCTCTTTTCTTGATGTCTCCAGTGCGTACCTTCATGTTTTCCCTCCAACCTTTCAAGTCCATACTCCATCCTCTTTTCACTCC--AATTTCTTTTTACTCCCTAACCACTGTCAGTTCAGTGTCCATAGCAGGCTCTGAT-AGACCCATGCCTGCCA--CTAGGGAAGCCCTCCA--CTCCCGGGGCCCAGCCCCCCTCCCCTGTATCCCTCTCCCACTCCCCCATTTTCCTA--AGGGGAGCATTTAGCAGCCAC-ATCTGGACCTCTCAGAGAGGTCTTCCTCTTCCCTCTGCTTCCTTTCCAGTTTA-TTTTTTTCCCTCTGAAACATTCCTATATCTGACTCCTACATT
s panTro4.chr7             143135451 604 + 161824586 AATCTGAGGGAAGGTGTTC--------------------ACAAAGGCCTGCAGGTAAGAGGCAACATGGCCCTTCTTGGGACCTGCAAGTAGTTCAGGCCCTGTGCCCAGGCCCATGCCA-GGGAAGCACTGC---------CCACAGGGCCACCTCCTTTCTTCTAAAAGGGTCAGCTCTAGAGACTTCTCACCCCTTCTCAC-------------CTGCACATGCAACAGGAATTCCTCCTGCTTTCATTGAAATCTCTTTCCC-TTTTTCCAGCCTTGTTTCTCTGT---GG--CTTTTACAGAGAAATCTCTTTTCTTGATGTCTCCAGTGCGTACCTTCATGTTTTCCCTCCAACCTTTCAAGTCCATACTCCATCCTCTTTTCACTCC--AATTTCTTTTTACTCCCTAACCACTGTCAGTTCAGTGTCCATAGCAGGCTCTGAT-AGACCCATGCCTGCCA--CTAGGGAAGCCCTCCA--CTCCCGGGGCCCAGCCCCCCTCCCCTGTATCCCTCTCCCACTCCCCTATTTTCCTA--AGGGGAGCATTTAGCAGCCAC-ATCTGGACCTCTCAGAGAGGTCTTCCTCTTCCCTCTGCTTCCTTTCCAGTTTA-TTTTTTTCCCTCTGAAACATTCCTATGTCTGACTCCTACCTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138939719 620 + 157549271 aatctgagggaaggtgttc----------------acatacaaaggcctgcaggtaagagggaacatggcccttcttgggacctgcaagtagttcagGTCCTGTGCCCAGGCTCATGCCA-GGGAAGCACTGC---------CCACAGGGCCACCTCCTTTCTTCTAAAAGAGTCAGCTCTAGAGACTTCTCACCCCTCCTCACTTTACCAGGCTCACTGCACATGCAACAGAAATTTCTCCTGCTTTCACTGAAATCTCTTTCCC-TTTTTCCAGCCTTGTTTCTCTGT---GG--CTTTTACAGAG--ATCTCTTTTCTTGATGTCTCCAGTGCGCACCTTCATTTTTTCCCTCCAACTTTTCAAGTCCGTACTCCATCCTCTTTTCACTCC--AATTTCCTTTTACTCCCTAACCACCATCAGTTCAGTCTCCATAGCAGGCTCTGAT-AGACCCATGCCTGCCA--CTAGGGAAGCCCTCTA--CTCCTGGGGCCCAACCCCCCTCCCCTATATCCCTCTCCCACTCCCCCATTTTCCTA--AGGGGAGCATTTAGCAGCCAC-ATCTGGACCTCTCAGAGAGGTCTTCCTCTTCCCTCTGCTTCCTTTCCAGTTTATTTTTTTTCCCTCTGAAACAGTCCTATATCTGACTCCTACATT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93076851 621 + 110113093 aatctgagggaaggtgttc----------------acatacagaggcctgcaggtaagagggaacatggcccttcttgggacctgcaagtagttcagGTCCTGTGCCCAGGCCCATGCCA-GGGAAGCACTGC---------CCACAGGGCCACCTCCTTTCTTCTAAAAGAGTCAGCTCTAGAGACTTCTCACACCTCCTCACTTTACCAGGCTCACTGCACATGCAAAAGAAATTTCTCCTGCTTTCACTGAAATCTCTTTCCC-TTTTTCCAGCCTTGTTTCTCTGT---GG--CTTTTACAGAGAAGCCTCTTTTCTTGATGTCTCCAGTGCGTACCTTCCTGTTTTCCCTCCAACCTTTCAAGTCCATACTCCATCCTCTTTTCCCTCC--AATTTCTTTTTACTCCCTAACCACTGTCAGTTCAGTCTCCATAGCAGGCTCTGAT-ACACCCATGCCTGCCA--CTAGGGAAGCCCTCCA--CTCCTGGGGCCCAACCCCCCTCCCCTATATCCCTCTCCCACTCCCTCATTTTCCTA--AGGGAAGCATTTAGCAGCCAC-ATCTGGACCTCTCAGAGAGGTCTTCCTCTTCCCTCTGCTTCCTTTCCAGTTTA-TTTTTTTCCCTCTGAAACAGTCCTATATCTGACTCCTACATT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180975245 621 + 198365852 aatctgggggaaggtgttc----------------acatacaaaggcgtgcaggtaagagggaacatggcccttcttgggacctgcaagtagttcagGTCCTGTGCCCA-GCCCATGCCA--GGAAGCACTGC---------CCATAGGACCACCTCTTCTCTTCTAAAAGAGTCAGCTCTAGAGACTTCTCACCCCTCCTTACTTTACCAGGCTCACTGCACATGCAACAGAAATTTCTCCTGCTTTCATTGACATCTCTTTCCC-TTTTTCCAGCCTTGTTTCTCTGT---GG--CTTTTACAGAGATCTCTCTTTCCTTGATGTCTCCAGTGTGTACCTTCATGTTTTCCCTCCAAGCTTTCAAGTCCGTACTCCATCCTCTTTTCACTCC--AATTTCTTTTTACTCCCTAACCTCTGTCAGCTCAGTCTCCATAGCAGGCTCTGATAAGACCCATGCCTGCCA--CTAGGGAAGCCCTCCA--CTCCTGGGGCCCAACCCTCCTCCCCTATATCCCTCTCCCACTCCCCCATTTTCCTA--AAGGGAGCATTTAGCAGCCAC-ATCTGGATCTCTCGGAGAGGTCTTCCTCTTCCCTCTGCTTCCTTTCCAGTTTATTTTCTTTCCCTCTGAAACAGTCCTATATCTGACTCCTACATT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174720969 621 + 192294377 aatctgggggaaggtgttc----------------acatacaaaggcgtgcaggtaagagggaacatggcccttcttgggacctgcaagtagttcagGTCCTGTGCCCA-GCCCATGCCA--GGAAGCACTGC---------CCATAGGACCACCTCTTCTCTTCTAAAAGAGTCAGCTCTAGAGACTTCTCACCCCTCCTTACTTTACCAGGCTCACTGCACATGCAACAGAAATTTCTCCTGCTTTCATTGACATCTCTTTCCC-TTTTTCCAGCCTTGTTTCTCTGT---GG--CTTTTACAGAGATCTCTCTTTCCTTGATGTCTCCAGTGTGTACCTTCATGTTTTCCCTCCAACCTTTCAAGTCCGTACTCCATCCTCTTTTCACTCC--AATTTCTTTTTACTCCCTAACCTCTGTCAGCTCAGTCTCCATAGCAGGCTCTGATAAGACCCATGCCTGCCA--CTAGGGAAGCCCTCCA--CTCCTGGGGCCCAACCCTCCTCCCCTATATCCCTCTCCCACTCCCCCATTTTCCTA--AAGGGAGCATTTAGCAGCCAC-ATCTGGATCTCTCGGAGAGGTCTTCCTCTTCCCTCTGCTTCCTTTCCAGTTTATTTTCTTTCCCTCTGAAACAGTCCTATATCTGACTCCTACATT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163386093 614 + 180432695 AATCTGGGGGAAGGTGTTC----------------ACATACAAAGGCGTGCAGGTAAGAGGGAACATGGCCCTTCTTGGGACCTGCAAGTAGTTCAGGTCCTGTGCCCA-GCCCATGCCA--GGAAGCACTGC---------CCATAGGACCACCTCTTCTCTTCTAAAAGAGTCAGCTCTAGAGACTTCTCACCCCTCCTCACTTTACCAGGCTCACTGCACATGCAACAGAAATTTCTCCTGCTTTCATTGAcatctctttccc-tttttccagCCTTGTTTCTCTGT---GG--CTTTTACAGAGATCTCTCTTTCCTTGATGTCTCCAGCGTGTACCTTCATGTTTTCCCTCCAACCTTTCAAGTCCATACTCCATCCTCTTTTCACTCC--AATTTCTTTTTACTCCCTAACCTCTGTCAGCT-------CATAGCAGGCTCTGATAAGACCCATGCCTGCCA--CTAGGGAAGccctcca--ctcctggggcccaaccctcctcccctatatccctctcccactcccccaTTTTCCTA--AGGGGAGCATTTAGCAGCCAC-ATCTGGATCTCTCAGAGAggtcttcctcttccctctgcttcctttccagtttattttctttccctctgaaACAGTCCTATATCTGACTCCTACATT
i papAnu2.chr3             C 0 I 321
s chlSab2.chr21            110418594 622 + 127223203 cgtctgacggaaggtgttc----------------acatacaaaggcgtgcaggtaagagggaacatggcccttcttgggacctgcaagtagttcagGTCCTGTGCCCAGGCCCATGCCA--GGAAGCACTGC---------CCATAGGACCACCTCTTCTCTTCTAAAAGAGTCAGCTCTAGAGACTCCTCACCCCTCCTCACTTTACCAGGCTCACTGCACATGCAACAGAAATTTCTCCTGCTTTCATTGACATCTCTTTCCC-TTTTTCCAGCCTTGTTTCTCTGT---GG--CTTTTACAGAGATCTCTCTTTCCTTGATGTCTCCAGTGTGTACCTTCATGTTTTCCCTCCAACCTTTCAAGTCCATACTCCATCCTCTTTTCACTCC--AATTTCTTTTTACTCCCTAACCTCTGTCAGCTCAGTCTCCATAGCAGGCTCTGATAATACCCATGCCTGCCA--CTAGGGAAGCCCTCCA--CTCCTGGGGCCCAACCCTCCTCCCCTATATCCCTCTCCCACTCCCCCATTTTCCTA--AGGGGAGCATTTAGCAGCCAC-ATCTGGATCTCTCAGAGAGGTCTTCCTGTTCCCTCTGCTTCCTTTCCAGTTTATTTTCTTTCCCTCTGAAACAGTCCTATATCTGACTCCTACATT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23766335 596 - 128169293 AATCTGAGGGAAGGTGTTC----------------GCACACAAAGGACT--------GAGGGAACACGGCCCTTCTTGGGACCTGCAAGTAGTTCAGGTCCTGTGCCCAGGCCCACGCCAGGGGAAGCACTGCAGGCAGCCACCACAGGGCTATGTCCTCTGTTCT----GAGGCAGCTCAAGAGATTTCTTTCCCCTCTTCACTCTACCAGGCTCACTGCACATGCAACAGAAATCGCTCCTGCTTTCATCTGAATCTCTTTCCCTTTTTTTCAGCCTTGTTTCTCTGTCCGGGCCCCTTTACAGGTAACTCTCTTTTCTTGATGCCTCCAGTGAGTGCCTTCATGTTTTCTCTCCAACCTTTCAAGTCCACACTCCATCCTCTTTTC------------------ACTCCCTAACCACTGTCAGCTCAGTTTCCATAGTAGGCTCTGAT-------ACGCCTGCCA--CTGGGGAAGCCCTCCA---GCCTGGGGCCCAATCC-CCTCCCCTATATCCCTCTTTCACTCCCCCATTTTCCC---AGGGAAGCATTTAGCAGCCAC-ATTTGGACCTCTCAGAGAGGTCTTC---TTCCCTCTGGTTCCTTTCCAGTTTA-TTTTTTTCCCTCGGAAACATTCCTGTATCTGACT-CTACATT
i calJac3.chr8             I 66 C 0
s canFam3.chr16             52086547 500 -  59632846 aactggagcgacggtgttcttggtagagcaccagcatgtgcaaaggcccggtgtcaagagacaactcgtcatttcctgggaactgccactagctgag-------------GGCGATGT---GGGAAGCG--GC---------------------------------------------------------------------------------------CACATG--ACAGACGGTTCTCCTGCTTCTACCTAAATCCATTTCCT-CCATCTGGGCCTTGTTTTGTTGT---AG--CTTTTATAGGACACTCTCCTCCCT--ACTCGTGCAGCTCCTGCCTTCGCATTTCCCCTCCCAC------AGCAGGTACTCCAGGCTCTCTGGACTCCCTCGGATCCTCTCCATCCCTCGCCTCC----------CCTCCAT-----------------CCCTTGCCCTCCAGCCTTGGGG---CCTCCACGCTCCTGGGGCTCAGTCC-------CTAC-TCTCTCCCCCATGTCCTCACTTCCTGAGGAGGCGGGCATGTACCAGCCACTGTCAGAGCCCCTCAGAGAGGCCTCGAGCCTTCCT-TCCTCCCCTGGCAGT----GATTTTGGTCTCTGCAACCATCTCAGATCTAACCCTGACTTT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I

a score=41011.000000
s hg38.chr7_GL383534v2_alt     35816 12 +    119183 AAAAGCTTACTT
s panTro4.chr7             143136055 12 + 161824586 AAAAGCTTACTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138940339 12 + 157549271 AAAAGCTTACTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93077472 12 + 110113093 AAAAGCTTACTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180975866 12 + 198365852 AAAAGTCTACTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174721590 12 + 192294377 AAAAGTCTACTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163387028 12 + 180432695 aaaagtctactt
i papAnu2.chr3             I 321 C 0
s chlSab2.chr21            110419216 12 + 127223203 AAAAGTCTACTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23766931 12 - 128169293 AAAAGCTTACTT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52087047 12 -  59632846 AAAATTTTATTT
i canFam3.chr16            C 0 I 699
e mm10.chr6                 40413490 1652 + 149736546 I

a score=16704.000000
s hg38.chr7_GL383534v2_alt     35828 5 +    119183 CTTTA
s panTro4.chr7             143136067 5 + 161824586 CTTTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138940351 5 + 157549271 CTTTA
i ponAbe2.chr7             C 0 I 16
s nomLeu3.chr13             93077484 5 + 110113093 CTTTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180975878 5 + 198365852 CTTTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174721602 5 + 192294377 CTTTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163387040 5 + 180432695 cttta
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110419228 5 + 127223203 CTTTA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23766943 5 - 128169293 CTTTA
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52087059 699 -  59632846 I

a score=8030.000000
s hg38.chr7_GL383534v2_alt     35833  7 +    119183 AAG-------tttt
s panTro4.chr7             143136072 14 + 161824586 AAGttttttttttt
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93077489  7 + 110113093 AAG-------tttt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180975883  7 + 198365852 AAG-------tttt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174721607  7 + 192294377 AAG-------tttt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163387045  7 + 180432695 aag-------tttt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110419233  7 + 127223203 AAG-------tttt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23766948  3 - 128169293 AAG-----------
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52087059 699 -  59632846 I
e ponAbe2.chr7             138940356 16 + 157549271 I

a score=38620.000000
s hg38.chr7_GL383534v2_alt     35840 15 +    119183 -ttttttttttttttt
s panTro4.chr7             143136086 15 + 161824586 -ttttttttttttttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138940372 15 + 157549271 -ttttttatttttttt
i ponAbe2.chr7             I 16 C 0
s nomLeu3.chr13             93077496 15 + 110113093 -ttttttttttttttt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180975890 15 + 198365852 -ttttttttttttttt
i rheMac3.chr3             C 0 I 229
s macFas5.chr3             174721614 15 + 192294377 -ttttttttttttttt
i macFas5.chr3             C 0 I 8
s papAnu2.chr3             163387052 15 + 180432695 -ttttttttttttttt
i papAnu2.chr3             C 0 I 1
s chlSab2.chr21            110419240 15 + 127223203 -ttttttttttttttt
i chlSab2.chr21            C 0 I 1
s calJac3.chr8              23766951 15 - 128169293 GTAtttatttttctt-
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52087059 699 -  59632846 I

a score=531511.000000
s hg38.chr7_GL383534v2_alt     35855 230 +    119183 gagagggagtcttgccctgtgtggcccaggctggagtgcagtggcgctatctcagctcactgcaacctccgcctcctgggttcatgcaattatcctgcctcagcctcccaagtagctgggattacaggcgcatgctaccatgcctggctaatttttccatttttagtagagatggggtttcaccatgttggctaggctggttttgaattcctgatctcatgatccacctg
s panTro4.chr7             143136101 230 + 161824586 gagagggagtcttgccctgtgtggcccaggctggagtgcagtggcgctatctcagctcactgcaacctccgcctcctgggttcatgcaattatcctgcctcagcctcccaagtagctgggattacaggcgcatgccaccatgcctggctaatttttccatttttagtagagatggggtttcaccatgttggctaggctggttttgaattcctgatctcatgatccacctg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138940387 228 + 157549271 gagagggagtcttgccc--tgtggcccaggctggagtgcagtggcgctatctcggctcactgcaacctctgcctcctgggttcatgcaattatcctgcctcagcctcccaagtagctgggattacaggcgcatgccaccatgcctggctaatttttccatttttagtagagatggggtttcaccatgttggctaggctggtttcgaactcctgatctcatgatccacccg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93077511 228 + 110113093 gagagggggtctcgccc--tgtggcccaggctggagtgcagttgcgctatctcagctcactgcaacctccgcctcctgggttcatgcaattatcctgcctcagcctcccaagtagctgggattacaggcgcatgccaccatgcctggctaatttttccatttttagtagagatggggtttcaccatgttggctaggctggtttcgaactcctgatcccatgatccaccct
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174721637 228 + 192294377 gagagggagtcttgccc--tgtggcccaggctggagtgcagtggcgctatctcggctcactgcaacctccgcctcccgggttcaagcaattatcctgcctcatcctcccaagtagctggaattacaggcgtgcgccaccatgcctagctaatttttgcatttttagtagagacggggtttcaccatgttggctaggctggtttcgaattcctgatctcatgatccaccca
i macFas5.chr3             I 8 C 0
s papAnu2.chr3             163387068 228 + 180432695 gagagggagtcttgccc--tgtggcccaggctggagtgcagtggcgctatctcagctcactgcaacctccgcctcccgggttcaagcaattatcctgcctcatcctcccaagtagctggaattacgggcgtgcgccaccatgcctagctaatttttgcatttttagtagagacggggtttcaccatgttggctaggctggtttcgaattcctgatctcatgatccaccca
i papAnu2.chr3             I 1 C 0
s chlSab2.chr21            110419256 228 + 127223203 gagagggagtcttgccc--tgtggcccaggctggagtgcagtggcgctatctcggctcactgcaacctccgcctcccgggttcaagcaattatcctgcctcatcctcccaagtagctggaattacaggtgtgcgccactatgcctagctaatttttgcatttttagtagagacggggtttcaccatgttggctaggctggtttcgaattcctgatctcatgatccacccg
i chlSab2.chr21            I 1 C 0
s calJac3.chr8              23766966 228 - 128169293 gagatggagtcttgctc--tgtcacccaggctggggtgcagtggcacgatcttggctcactacagcctccacctccagggttcaagcaattctccttcctcagcctgccaagtagctgggattacaggcacacaccaccacaaccagctaatttttgtattttcagtagacacagggtttcaccatgttggccaggctgatctcaaactcctgatcttgtgatccacctg
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52087059 699 -  59632846 I
e rheMac3.chr3             180975905 229 + 198365852 I

a score=389475.000000
s hg38.chr7_GL383534v2_alt     36085 136 +    119183 ccttggcctcccaaagtgctgggattacaggcatgagccgccgtgctcagACT-AAAGCTTTTCTttatacgtgtgttcatgttgtaaaaattcattgaattatatacgtatgattttt--gaacttatttctataaag
s panTro4.chr7             143136331 136 + 161824586 ccttggcctcccaaagtgctgggattacaggcatgagccgccgtgctcagACT-AAAGCTTTTCTTTATATgtgtgttcatgttgtaaaaattcattgaattatatacgtatgattttt--gaacttatttctataaag
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138940615 136 + 157549271 ccttggcctcccaaagtgctgggattacaggcatgagccgccatgcccagACT-AAAGCTTTTCTttatacgtgtgttcatgttgtaaaaagtcattgaattatatacctatgattttt--gaacttatttctataaag
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93077739 136 + 110113093 ccttggcctcccaaagtgctgggattacaggcatgagctgccatgcccagACT-AAAGCTTTTCTttatacgtgtgttcacgttgtaaaaattcattgaattatatacatatgattttt--gaacttatttctataaag
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180976134 137 + 198365852 ccttggcctcccaaagtgctgggattacaggcatgagctgctgtgcccagACTTAAAGTTTTCCTttatacgtgtgttcatgttgtaaaaattcattgaattatatacatatgattttt--gaacttacttctttaaag
i rheMac3.chr3             I 229 C 0
s macFas5.chr3             174721865 137 + 192294377 ccttggcctcccaaagtgctgggattacaggcatgagctgctgtgcccagACTTAAAGTTTTCCTttatacgtgtgttcatgttgtaaaaattcattgaattatatacatatgattttt--gaacttacttctttaaag
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163387296 131 + 180432695 ccttggcctcccaaagtgctgggattacaggcatgagccgctgtgccc------aaaGTTTTTCTTTATACGTGTGTTCATGttgtaaaaattcattgaattaTATACATATGATTTTT--GAACTtacttctttaaag
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110419484 135 + 127223203 -cttggcctcccaaagtgctgggattacaggcatgagccgctgtgcccagACT-GAAGTTTTTCTttatacgtgtgttcatgttgtaaaaattcattgaattatatacatatgattttt--gaacttacttctttaAAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23767194 134 - 128169293 cctcag-ctcccaaagtgctgggattacaggtatgagcc---aAGCCTGGACT-GAAGTCTTTATTTGTACAtgtgttgatgctgtaaaaattcattgaattatatacatatgattttttaaaacttatttctctaaag
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52087059 699 -  59632846 I

a score=134893.000000
s hg38.chr7_GL383534v2_alt     36221  72 +    119183 ttttatatttcaataaaaagcttaaagaTAT--------------------------ATATATATTATTTTCCATACATGACAAGT-A---TTGTATCATAT
s panTro4.chr7             143136467  70 + 161824586 ttttatatttcaataaaaagcttaaag--aT--------------------------ATATATATTATTTTCCATACATGATAAGT-A---TTGTATCATAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138940751  72 + 157549271 ttttatatttcaataaaaagctcaaaGATAT--------------------------ATATATATTATTTTCCATACATGACAAGT-A---TTGTATCATAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93077875  72 + 110113093 ttttatacttcaataaaaagcttaaagaTAT--------------------------ATATATATTATTTTCCATACATGACAAGT-A---TTATATCATAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180976271  68 + 198365852 ttttatatttcaataaaaagcttaaTGATAT--------------------------ATATACGTTATTTTCCATACATGACAAAT-A-------ATCATAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174722002  68 + 192294377 ttttatatttcaataaaaagcttaaTGATAT--------------------------ATATACGTTATTTTCCATACATGACAAAT-A-------ATCATAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163387427  69 + 180432695 ttttatatttcaaCAAAAAGCTTAATGATAT--------------------------ATATACGTTATTTTCCATACATGACAAATAA-------ATCATAT
i papAnu2.chr3             C 0 C 0
s calJac3.chr8              23767328 101 - 128169293 tgttatagttcaataaaaagcgtaaagaTAtgtgtgtgtgcgtgtgtgtgtgtATACACACACATTATTTTCCATACATGACAAGT-ACTGTTATATCATAT
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52087059 699 -  59632846 I
e chlSab2.chr21            110419619   0 + 127223203 C

a score=160779.000000
s hg38.chr7_GL383534v2_alt     36293 96 +    119183 ATACTATTTTTGAACTTATTCCTATAAAATGTTATATTTCAATAAAAACTGACAGATATATTACATTATTTTCCATCCATGACAAGTATTATTATA
s panTro4.chr7             143136537 96 + 161824586 ATACTATTTTTGAACTTATTCCTATAAAATGTTATATTTCAATAAATACTGACAGATCTATTACATTATTTTCCATCCATGACAAGTATTATTATA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138940823 96 + 157549271 ATACTATTTTTTAACTTACTCCTATAAAATGTTATATTTCAATAAAAACTGACAGATATATTACATTATTTTCCATCTATGACAAGTATTATTATA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93077947 96 + 110113093 ATACTATTTTTGAACTTATTCCTATAAAATGTTATATTTCAATAAAAACTGACAGATATATTACGTTATTTTCCATCCATGACAAGTATTCTTATA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180976339 93 + 198365852 ATACTATTTTTGAACTTATTCCTATTAAATGTTATATTTCAATAAAAACTGAAAGATATATTACATTATTTTCCATCCATGACAAGTATTATA---
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174722070 93 + 192294377 ATACTATTTTTGAACTTATTCCTATTAAATGTTATATTTCAATAAAAACTGAAAGATATATTACATTATTTTCCATCCATGACAAGTATTATA---
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163387496 93 + 180432695 ATACTATTTTTGAACTTATACCtattaaatgttatatttcaataaaaactgaaagatatattacattattttccaTCCATGACAAGTATTATA---
i papAnu2.chr3             C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52087059 699 -  59632846 I
e calJac3.chr8              23767429  0 - 128169293 C
e chlSab2.chr21            110419619  0 + 127223203 C

a score=4649.000000
s hg38.chr7_GL383534v2_alt     36389 14 +    119183 TCATACATGCTAtt
s rheMac3.chr3             180976432 12 + 198365852 TCATACATGCTA--
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174722163 12 + 192294377 TCATACATGCTA--
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163387589 13 + 180432695 TCatacatgcta-t
i papAnu2.chr3             C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52087059 699 -  59632846 I
e calJac3.chr8              23767429  0 - 128169293 C
e chlSab2.chr21            110419619  0 + 127223203 C
e nomLeu3.chr13             93078043  0 + 110113093 C
e ponAbe2.chr7             138940919  0 + 157549271 C
e panTro4.chr7             143136633  0 + 161824586 C

a score=208707.000000
s hg38.chr7_GL383534v2_alt     36403 298 +    119183 ttttttttttttttttttgagacggagtctcg--ctgtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaggctccgccccctggggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccacctcgcccggctaattttttg--tatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
s rheMac3.chr3             180976444 268 + 198365852 -----tttttttttttttgagactgagtctcgctctgttgcccaggctggaatgcagtggcgcgatctcggctcactgcaagctctgcctcct-gggttcatgccattctcctgccttggcctcccgagtagctgggactacaggcgcccaccaccacgcctggctaatttttttgtcttttttagtagagacgggatttcactatgttagccaggatggtctcaatctcctgaccttgtgatccgcccgcctcggcctcccaaagtgctggga----------------------------
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174722175 267 + 192294377 ------ttttttttttttgagacggagtctcgctctgttgcccaggctggaatgcagtggcgcgatctcggctcactgcaagctctgcctcct-gggttcatgccattctcctgccttagcctcccgagtagctgggactacaggcgcccaccaccacgcctggctaatttttttgtcttttttagtagagacggggtttcactgtgttagccaggatggtctcaatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctggga----------------------------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163387602 272 + 180432695 ttttttttttttttttttgagagggagtctcgctctgtcgcccaggctgggatgcagtggcacgatctcggctcactgcaagctctgcctcct-gggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcacccaccaccacgcccgggtaatttttttg-cttttttagtagagacggggtttcactgtgttagccaggatggtctcaatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctggga----------------------------
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110419619 270 + 127223203 ttttttttttttttttttgagagggagtcttgccctgtggcccaggctggagtgcagtggcgctgtctcggctcactgcaacctccacctccc-gggttcaagcaatcatcctgcctcatcctcccaagtagctggaattacaggtgtgcgccactatgcctagctaatttttg---catttttagtagagacggggtttcactgtgttagccaggatggtctcgatctcctgaccccgtgatccgcccgcctcggcctcccaaagtgctggaa----------------------------
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52087059 699 -  59632846 I
e calJac3.chr8              23767429   0 - 128169293 C
e nomLeu3.chr13             93078043   0 + 110113093 C
e ponAbe2.chr7             138940919   0 + 157549271 C
e panTro4.chr7             143136633   0 + 161824586 C

a score=12393.000000
s hg38.chr7_GL383534v2_alt     36701 6 +    119183 TCATAC
s panTro4.chr7             143136633 6 + 161824586 TCATAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138940919 6 + 157549271 TCATAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93078043 6 + 110113093 TCATAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180976712 5 + 198365852 -CATAC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174722442 5 + 192294377 -CATAC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163387874 5 + 180432695 -cataC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110419889 5 + 127223203 -CATAC
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52087059 699 -  59632846 I
e calJac3.chr8              23767429 0 - 128169293 C

a score=1112203.000000
s hg38.chr7_GL383534v2_alt     36707 414 +    119183 ATGCTATTTTTAAGTACTGTCATT--TTTTTTTCCTGGTCCCTGCCTTTTTTGTACATGTAAGCCTTGCCCTACCGCATCCCATACTTTACCTCAT-CCAGGGAATACATAACTTAATAAGCTCATATACACCCATCAATACTTTCCATGTTTATGTCTGGGTGTGTGTGTGTCTCTATCTAGACAGACACTGTGATTGTTTAACAACAGTGTAATCATATCACATGTAcagtcggctggccctctgtatcccctaataccatattctcagattcaaccaactgcatgcagatcaaaaatatttggaagaataaagaataacaataagaaaatttaatacatgtaaaaac-caacatagtataacaactatgtgcgtagcatttccattgtatgaggtattataagtaacctagaaat
s panTro4.chr7             143136639 413 + 161824586 ATGCTATTTTTAAGTGCTGTCATT--TTTTTT-CCTGGTCCCTGCCTTTTTTGTACATGTAAGCCTTGCCCTACTGCATCCCATACTTTACCTCAT-CCAGGGAATACATAACTTAATAAGCTCATATACACCCATCAATACTTTCCATGTTTATGTCTGGGTGTGTGTGTGTCTCTATCTAGACAGACACTGTGATTGTTTAACAACAGTGTAATCATATCACATGTAcagtcggctggccctctgtatcccctaataccgtattctcagattcaaccaactgcatgcagatcaaaaatatttggaaaaataaagaataacaataagaaaatttaatacatgtaaaaac-caacatagtataacaactatgtgcatagcatttccattgtatgaggtattataagtaacctagaaat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138940925 413 + 157549271 ATGCTATTTTTAAGTGCTGTCATT--TTTTTT-CCTGGTCCCTGCCTTTTTTATACATGTAAGCCTTGCCCTACCCCATCCCATACTTTACCACAT-CCGGGGAATACATATCTTAATAAGCTCATATACACCCATCAATACTTTCCATGTTTATGTCTGGGTGTGTGTGTGTCTCTATCTAGACAGACACTGTGATTGCTTAACAACAGTGTAATCATATCACATGTACAGTCGGCTggccctctgtatcccctaataccatattctcagattcaaccaactgcatgcagatcaaaaatatttggaaaaataaagaataacaataagaaaatttaatacatgtaaaaac-caacacagtataacaactatgtgcgtagcatttccattgtatgaggtattataagtaacctagagat
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93078049 411 + 110113093 ATGCTATTTTTAAGTGCTGTCATT--TTTTTT-CCTGGTCCCTGCCTTTTTTATATGTGTAAGCCTTGCCCTACCGCATCCCATACTTTACCTCAT-CCAGGGAATACATATCTTAATAAGCTCATATACACCCATCAATACTTTCCATGTTTATGTCTGGGTGTGTGTGTGTCTCTATCTAGACAGACACTGTGATTGTTTAACAACAGTGTAATCGTATCACATGTAcagtcggccagacctctgtatccc--gataccatactctcagattcaaccaactgcatgcagatcaaaaatatttggaaaaataaagaataacaataagaaaatttaatacgtgtaaaaac-caacacggtataacaactatgtgtgtagcatttccactgtatgaggtattataagtaacctagagat
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180976717 404 + 198365852 ATGGTATTTTTAAGTGTTGTCATTTGTTTTTT-CCTGG-CCCTGCCTTTTTAATACTTGTAAGCCTTGCCCTACCCCATCCCATACTTTACCTCATCCCAGGGAATACATATCT---TAAGCTTGTATATACCCATCAATACTTTCCATGTTTATGTCTGGGTGTGTGTATGTGTCTATCTAGACAGAGACTGTGACTGTTTAACAACAGTGTAATCATATCACATGTACAGTcggccggccctctgtatccc--gataccatatccttagattcaaccaactgcgtgcagataaaaaatatttggaaaaataaagaacaacaataataa------atgtatgtaaaaaa-caacacagtataacaactatgtgcatagcatttccattgtatgaagtattataagtaatctagagat
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174722447 404 + 192294377 ATGCTATTTTTAAGTGTCGTCATTTGTTTTTT-CCTGG-CCCTGCCTTTTTAATACTTGTAAGCCTTGCCCTACCCCATCCCATACTTTACCTCATCCCAGGGAATACATATCT---TAAGCTTGTATATACCCATCAATACTTTCCATGTTTATGTCTGGGTGTGTGTATGTGTCTATCTAGACAGAGACTGTGACTGTTTAACAACAGTGTAATCATATCACATGTATAGTcggccggccctctgtatccc--gataccatatccttagattcaaccaactgcgtgcagataaaaaatatttggaaaaataaagaacaacaataataa------atgtatgtaaaaaa-caacacagtataacaactatgtgcatagcatttccattgtatgaagtattataagtaatctagagat
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163387879 404 + 180432695 ATGCTATTTTTAAGTGTCGTCATTTGTTTTTT-CCTGG-TCCTGCCTTTTTTATACTTGTAAGCCTTGCCCTACCCCATCCCATACTTTACCTCATCCCAGGGAATACATATCT---TAAGCTTGTATATACCCATCAATACTTTCCATGTTTATGtctgggtgtgtgtatgtgtctatctAGACAGAGACTGTGACTGTTTAACAACAGTGTAATCATATCACATGTACAGTCGGCCGGCCCTCTGTATCCC--GATACCATATCCTTAGATTTAGCCAACTGTGtgcagataaaaaatatttggaaaaataaagaataacaataataa------atgtatgtaaaaaa-caacacagtataacaactatgtGCATAGCATTTCCATTGTAtgaagtattataagtaatctagagat
i papAnu2.chr3             C 0 I 207
s chlSab2.chr21            110419894 400 + 127223203 ATGCTATTTTTAAGTGTCGTCATTTGTTTTTT-CCTGG-CCCTGCCTTTTTTATACTTGTAAGCCTTGGCCTACCCCATCCCATACTTTACCTCATCCCAGGGAATACATTTCT---TAAGCTTGTATATACCCATCAATACTTTCCATGTTTCTGTCTGGGTGTGTGTATGTGTCTATCTAGACAGAGACTGTGACTGTTTAACAACAGTGTAATCATATCACATGTACAGTTGgccggccctctgtatccc--gataccatatccttagattcaaccaactgcgtgcagataaaaaatatttggaaaaataaaGAATAACAATAATAA----------ATGTAAAaaa-caacacagtataacaactatgtgcatagcatttccattgtatgaagtattataagtaatctagagat
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23767429 404 - 128169293 GTGCTATTTTTAAGTGATGTCCT---TTTTTT-CCTGGCCCCTGTCTTTTT--TACATATAAGGCTTACCCTACC-CATCCCATATTTTACCTCATCCCAGGGAATACATGTCTTAATAACCTAATATACACTCATCAACAGCTTCCATGATTGTGTCTGGGTGTGTATGTGTCTCTATCTAAACAAAGACTGTGACTGTTTAACAACAGTGTGATCATATCACGTATACAGTcagctggccctttggatcccctgataccacatcctcagattcaaccaactgcatgcagatcaaaaa-atgtggaaaaata------aacaataataaaacataacacatggaaaaaagaaacacagtataacgactatttgcatagcatgtgccttgtatgaggtattgtaagtaattgagcaat
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52087059 699 -  59632846 I

a score=1306771.000000
s hg38.chr7_GL383534v2_alt     37121 447 +    119183 gatttaaagcacagaaggtccctgatttaccatgattcaactcaccaagttttcaactgtatgatgggtttattaggatgtagccccacgttaagtcaagaagcTCCTTAAGACTTTGATGGGATtatggcttctactgaatgtgaattgcttccgcaccatcataaggtcgaaaaatcatacattaagtggacccgtcgtaagtcaaggactgttggctgggttgccagcattaaatgcacttttgacttacaatgttttcaacttacaataggcttatgggggtgtaaccccacagtaagttgaggagtatctgtatatgggaggaactgcataggttatatgcacatactacaccctactacatgggaacgtgagcatctgcagatttgggtatctgagggagggtgcctagaaccaaggccctgcaaataccaaggaatgaTG
s panTro4.chr7             143137052 447 + 161824586 gatttaaagcacagaaggtccctgatttaccatgattcaactcaccaagttttcaactgtatgatgggtttattaggatgtagccccacgttaagtcaagaagcTCCTTAAGACTTTGATGGGATtatggcttctactgaatgtgaattgcttccgcaccatcataaggtcgaaaaatcatacattaagtggacccgtcgtaagtcagggactgttggctgggttgccagcattaaatgcactttggacttacaatgttttcaacttacaataggcttatgggggtgtaaccccacagtaagttgaggagtatctgtatatgggaggatgtgcataggttatacgcacatactacaccctactatatggggacttgagcatctgcagatttgggtatctgagggagggtgcctagaaccaaggccctgcagataccaaggaatgaTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138941338 447 + 157549271 gacttaaagcacagaaggaccctgatttaccctgattcaacttaccaagtttccaactgtatgatgggtttattaggatgtagccctacgttaagtcaagaagcTCCTTAAGACTTTGATGGGATtatggcttttactgaatgcgcattgcttctgcaccatcataaggtcgaaaaatcatacattaaatggacccatagtaagtcagggactgtcGGCTGCGTTGCCAgcattaaatgcacttttgacttacaatgttttcaacttacaatgggcttatgggagtgtaaccccacagtaagttgaggagcatctAtatatgggaggatgtgcataggttatacgcacatactacaccctactatattgggacacgagcatctgcagatttgggtgtctgagggagggtgcctagaaccaaggccctgcagataccaagggatgaTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93078460 439 + 110113093 gatttaaagcacagaaggtccctgatttaccatgattcaacttaccaagttttcaactgtatgacgggtttattaggatgtagccctacgttaagtcaagaagcTCCTTAAGACTTTGATGGGATtatggcttctactgaatgcgcattgcttccgcaccatcataaggtcgaaaaatcacacattaagtggacccatagtaagtcagggactatcGGCTGCATTGCCAgcattaaatgcacttttgacttacaatgttttcaacttaca--------atgggggtgtaaccccacagtaagttgaggagtatctgtatatgggaggatgtgcataggttatatgcacatactacaccctactatatggggacttgggcatctgcagatttggctatctgagggagggtgcctagaaccaaggccctgcagataccaagggatgaTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180977121 447 + 198365852 gatttaaagcacagaaggtccctgatttaccatgattcaacttaccaagttttcaactgtatgatgggtttattaggaggtagccccatggtaagtcaagaagcTCCTTAAGACTTTGATGGGATtatggtttctactgaatgcgcattgcttccacaccatcataaagtcgaaaaatcatacattaagtggacccatcgtaagtcatagactgtcGGCTGCGTTGCCAgcattaaatgcacttttgacttacaatgttttcaacttacaatgggcttaggggggtgtaaacccacagtaagttgaggagtatctgtatatgggaggatgtgcgtaagttacacgcacagactacaccctactatatggggacttcagcatctgcagatttgggtatctgaggcaggtcgcccagaaccacggccctgcagataccaagggatgaTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174722851 447 + 192294377 gatttaaagcacagaaggtccctgatttaccatgattcaacttaccaagttttcaactgtatgatgggtttattaggaggtagccccatggtaagtcaagaagcTCCTTAAGACTTTGATGGGATtatggtttctactgaatgcgcattgcttccacaccatcataaagtcgaaaaatcatacattaagtggacccatcgtaagtcatagactgtcGGCTGCGTTGCCAgcattaaatgcacttttgacttacaatgttttcaacttacaatgggcttaggggggtgtaaacccacagtaagttgaggagtatctgtatatgggaggatgtgcgtaagttacacgcacagactacaccctactatatggggacttcagcatctgcagatttgggtatctgaggcaggtcgcccagaaccaaggccctgcagataccaagggatgaTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163388490 447 + 180432695 aaattaaagcacagaAGGTCCGTGATTTACCATGATTCAACTTACCAAGTTTTCAACTGTATGATGGGTTTATTAGGAGGTAGCCCCATGGTAAGTCAAGAAGTTCCTTAAGACTTTGATGGGattatggtttctactgaatgcgcATTGCTTCCACACCATCATAAAGTCGAAAAATCATACATTAAGTGGACCCATCGTAAGTCAGGGACTGTCGGCTGCGTTGCCAGCATTAAATGCACTTTTGACTTACAAtgttttcaacttacaatgggctTAGGGGGGTGTAAACCCACAGTAAGTTGAGGAGTATctgtatatgggaggatgtgcgtAAGTTACACGCACAGACTACACCCTACTATATGGGGACTTCAGCATCTGCAGATTTGGGTATCTGAGGCAGGTCGCCCAGAACCAAGGCCCTGCAGATACCAAGGGATGATG
i papAnu2.chr3             I 207 C 0
s chlSab2.chr21            110420294 446 + 127223203 gatttaaagcacagaaggtccctgatttaccatgattcaacttaccaagttttcaactgtatgatgggtttattaggaggtagccccatggtaagtcaagaagcTCCTTAAGACTTTGATGGGATtatggtttctactgaatgcgcattgcttccacaccatcataaagtcgaaaaatcatacattaagtggacccatcgtaagtcagagactgtcGGCTGCGTTGCCAgcattagatgcacttttgacttacaatgttttcaacttacaatgggctt-ggggggtgtaaacccacagtaagttgaggagtatctgtatatgggaggatgtgcataagttacacgcacagactacaccctactatatggggacttcagcatctgcagatttgggtatctgaggcaggtcgcctagaaccaaggccctgcagataccaagggatgaTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23767833 417 - 128169293 gatttaaagcacagacggtccctgatttaccatgattcaacttaccaagttttcaactgtgtgatgggtttatcaggatgcaGTCTT-------------AAGTTCCTTAAGACTTTGATGGGATtatggtttctactgaatgcgcattgcttctgtgccatcataaagtagaaaaatcatacattaagtggaaccatcatgagtcagggactgtctgCCGTGCAGCCAGCATTAAGTGtacttttgacttacaatg----------------ggcttatggg-gtggaacctcacggtaagttgaggagcatctgtatatgggaggatgtgcgtaggttacatgcacatactacaccctattgtatggggacttcagcatctgctgatttcggtgtctgaggaaggtcacctagaaccaatgccctgcagacaccaagggatgaTG
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40413490 1652 + 149736546 I
e canFam3.chr16             52087059 699 -  59632846 I

a score=282130.000000
s hg38.chr7_GL383534v2_alt     37568 88 +    119183 AGTTTTCTGCACGTTGCTATTCTCACACAAATGAGATCTGGTGATCCTTCCATGTCACCTTCTTATGCTCTAATTCACTACTCACTAT
s panTro4.chr7             143137499 79 + 161824586 AGTTTTCTGCACGTTGCTATTCTCACACAAATGAG---------TCCTTCCATGTCACCTTCTTATGCTCTAATTCACTACTCACTAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138941785 88 + 157549271 AGTTTTCTGCACCTTGCTATTCTCACACAAATGAGATCTGGTGGTCCTTCCATGTCACCTTCTTATGCTCTAATTCACTATTCACTAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93078899 88 + 110113093 AGTTTTCTGCACCTTGCTATTCTCACACAAATGAGATCTGGTGGTCCTTCCATGTCACCTCCTTATGCTCTAATTCACTATTCACTGC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180977568 88 + 198365852 AGTTTTCTGCACCTTGCTATTCTCACACAAATGAGATCTGGTGGTCCTTCCATGTCGTCATCTTATGCTCTAATTCACTATTCGCCAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174723298 88 + 192294377 AGTTTTCTGCACCTTGCTATTCTCACACAAATGAGATCTGGTGGTCCTTCCATGTCGTCATCTTATGCTCTAATTCACTATTCGCCAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163388937 88 + 180432695 AGTTTTCTGCACCTTGCTATTCTCACACAAATGAGATCTGGTGGTCCTTCCATGTCATCTTCTTATGCTCTAATTCACTATTCACCAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110420740 88 + 127223203 AGTTTTCTGCACCTTGCTATTCTCACACAAATGAGATCTGGTGGTCCTTCCATGTCATCTTCTTATGCTCGAATTCACTATTCACCAC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23768250 88 - 128169293 AGTTTTCTGCGCCTTGCTATTCTCACACAAATTAGACCTTGTGGTCCTTCCATGTCACCTTCTTATGCTCTAGTTCACTATTTACCAT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40415142 79 + 149736546 AGTTTTCTGC-CCTTGCT--------AAAAAACAGACCTAGTAGGACTTTTCTGTTGTTGTCTTATGCTCTGATTTATTATTCATAAT
i mm10.chr6                I 1652 C 0
e canFam3.chr16             52087059 699 -  59632846 I

a score=347482.000000
s hg38.chr7_GL383534v2_alt     37656 113 +    119183 GGCT----------------TTCTAGTTTTCTACCACTGTGAACAATGTTGAATTAAATATTGTTACACATACG------------------------------TCAT-----TCTGATGG--------------ATAGATCCTGAGGAGTAAGGTTGCTGAAACAAAAGGCAC--ATGt
s panTro4.chr7             143137578 111 + 161824586 GACt----------------ttctagttttctaccactgtgaacaatgctgaattaaatattgttacacatacg------------------------------tcat-----tctgatgg--------------atagatcctgaggagtaaggttgctgaaacaaaagccac----gt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138941873 113 + 157549271 GGCA----------------TTCTAGTTTTCTACCACTGTGAACAATGTTGAATTAAATCTTGTTACACATACG------------------------------TCAT-----TCTGGTGG--------------ATAGATCCTGAGGAGTAAGGTTGCTGAAACAAAAGCCAC--ACGT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93078987 113 + 110113093 GGCT----------------TTCTAGTTTTCTACCACTGTGAACAATGTTGAATTAAATATTGTTACACATATG------------------------------TCAT-----TCTGGTGG--------------ATAGATCCTGAGGAGTAACATGGCTGAAACAAAAGCCAC--ATAt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180977656 130 + 198365852 GGCT-TTCAATCCATAGGCCTTCTAGTTTTCTACCACTGTGAACAATGTTGAATTAAATATTGTTACACATACA------------------------------TCAT-----TCTGGTAG--------------ATAGATCTTGAGGAGTAAAGTTGCTGAAACAAAAGCCACGTATGT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174723386 130 + 192294377 GGCT-TTCAATACATAGGCCTTCTAGTTTTCTACCACTGTGAACAATGTTGAATTAAATATTGTTACACATACA------------------------------TCAT-----TCTGGTAG--------------ATAGATCTTGAGGAGTAAAGTTGCTGAAACAAAAGCCACGTATGt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163389025 130 + 180432695 GGCT-TTCAATACATAGGCCTTCTAGTTTTCTACCACTGTGAACAACGTTGAATTAAATATTGTTACACATACA------------------------------TCAT-----TCTGGTAG--------------ATAGATCCTGAGGAGTAAAGTTGCTGAAACAAAAGCcacatatgt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110420828 130 + 127223203 GGCT-TTCAATACACAGGCCTTCTAGTTTTCTACCACTGCGAACAATGTTGAATTAAATATTGTTACACATACA------------------------------TCAT-----TCTGGTAG--------------ATAGATCCTGAGGAGTAAAGTTGCTGAAACAAAAGCCACGTATGt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23768338 130 - 128169293 GGCT-TTTAATACATAGCCTTTCTAGTTTTCTATCACTGTGAACAATGTTGAATTAAATAATGTTTCACATATA------------------------------TCAT-----TCTGGTGG--------------ACAGATCCTGTGGAATGAGGTTGCCAAAACAAAACCCACATATGT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40415221 154 + 149736546 GGCTATTTACTATGTGAATATTCTGGCTCTCTATTGC-GTAAACACTGCAAAATTacacacacacacacacacacacacacacacacacacTCTTCTGGTGTTTTCAT----ATCTAAAGG--------------GCAGATCCC-AGCAGTGCGGCTGCTGAAACAAAAGAAGC------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52087758 132 -  59632846 ----------------GGCGTTCCTATTCCCTACCACTCTATACAAGGCTGTCTTAAATATTCTTAAATAGACA------------------------------CCATTATATTCTGGGGGTTAATGAATAtagagcagaccctaaggagtgggactgctaccgcagagagcgc--gggt
i canFam3.chr16            I 699 I 1

a score=67888.000000
s hg38.chr7_GL383534v2_alt     37769 37 +    119183 ttta-------------tttatttatttatttaga---gaagtctcactctgt
s panTro4.chr7             143137689 37 + 161824586 ttta-------------tttatttatttatttaGA---gaagtctcaccctgt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138941986 50 + 157549271 tttatttatttattcattttatttatttatttaGA---gaagtctcactctgt
i ponAbe2.chr7             C 0 I 16413
s nomLeu3.chr13             93079100 35 + 110113093 ttta-------------tttatttatttatttaga---gaagtctcactct--
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180977786 45 + 198365852 tttatttatttg-----tttgtttatttatttaGA---GAACGctcactctgg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174723516 45 + 192294377 tttatttattta-----tttgtttatttatttaga---gaagtctcactctgg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163389155 45 + 180432695 tttatttattta-----tttgtttatttatttaga---gaagtctcactctgg
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110420958 41 + 127223203 tttattta---------tttgtttatttatttaga---gaagtctcactttgg
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23768468 36 - 128169293 -----------------TTGACTGATTGAtttagaaacgaagtgttgctctgt
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40415375 13 + 149736546 ---A-------------TTTATTT-TTAAT-----------------------
i mm10.chr6                C 0 C 0
e canFam3.chr16             52087890  1 -  59632846 I

a score=433925.000000
s hg38.chr7_GL383534v2_alt     37806 150 +    119183 tgcccaggttggagtgcagtggtgcgatgttggctcactgcaacttctgcctcccgggttcaagcagttctcctgcctcagcctcccaagtatgtgggattataggcacccaccaccaagcctagctaatttttgtatttttagtagaga
s panTro4.chr7             143137726 150 + 161824586 tgcccaggttggagtgcagtggcgcgatgttggctcactgcaacttctgcctcccgggttcaagcagttctcctgcctcagcctcccaagtatgtgggattataggcacccaccaccaagcctagctaatttttgtatttttagtagaga
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138958449 150 + 157549271 tgcccaggttggagtgcagtggtgcgatgttggctcactgcaacttctgcctcccgggttcaagcagttctcctgcctcagcctctcgagtatgtggaattacaggcgcccactaccaagcctggctaatttttgtatttttagtagaga
i ponAbe2.chr7             I 16413 C 0
s nomLeu3.chr13             93079135 150 + 110113093 tgcccaggttgaagtgcagtggtgcgatgttggctcactgcaacttctgcctcccgggttcaagcagttctcctgcctcagcctcctgagtatgtgggattacaggcgcccaccaccaagcctggctaatttttgtatttttagtagaga
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180977831 150 + 198365852 cgtccaggctggagtgcagtggtgcgatgttggctcacggcaacttctgcctcccaggttcaaacaattctcctgcctcagcctcccgagtatgtgggattacaggtgcccaccaccaagcctggctaatttttgtatttttagtagaga
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174723561 150 + 192294377 cgtccaggctggagtgcagtggtgcgacgttggctcacggcaacttctgcctcccaggttcaaacaattctcctgcctcagcctcccgagtatgtgggattacaggtgcccaccaccaagcctggctaatttttgtatttttagtagaga
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163389200 150 + 180432695 cgtccaggctggagtgcagtggtgcgatgttggctcacggcaacttctgcctcccaggttcaaacaattctcctgcctcagcctcccgagtatgtgggattacaggtgcccaccaccaagcctggctaatttttgtattttcagtagaga
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110420999 150 + 127223203 cgtccaggctggagtacagtggtgcgatgttggctcactgcaacttctgcctcccaggttcaaacaattctcctgcctcagcctcccgagtatgtgggattacaggtgcccaccaccaagcctggctaatttttgtatttttagtacaga
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23768504 150 - 128169293 cacccaggctggagtgcagttgtgtgatattggttcactgcaacttctggctaccaggttcaagcgattctcctgcctcagcctcccgaatagctgggactacaggtgcctaccaccacgcctggctaatttttgtatttttagtaggga
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40415388  27 + 149736546 ---------------------------TGTTGGCATGCTG------------------------------------------------------------------------------------------------GTTTTTGATAAAGA
i mm10.chr6                C 0 C 0
e canFam3.chr16             52087890   1 -  59632846 I

a score=355739.000000
s hg38.chr7_GL383534v2_alt     37956 119 +    119183 tggggtttcaccatgttggccaggctggtctcaaactctcgacctcaagtgatctgcccgccttggcctcccaaagtgttgggattacaggcgtgagccaccatgcctggccGT---TTTTT
s panTro4.chr7             143137876 121 + 161824586 tggggtttcaccatgttggccaggctggtctcaaactctcgacctcaagtgatctgcccgccttggcctcccaaagtgttgggattacaggcgtgagccaccatgcctggccgtg-tttttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138958599 121 + 157549271 cggggcttcaccatgttggccaggctggtctcaaactcttgacctcaagtgatctgcccgccttggcctcccaaagtgctgggattacaggtgtgagccaccatgcctggccGTG-TTTTTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93079285 121 + 110113093 tggggtttcaccatgttggccaggctggtctcaaactcttgacctcaagtgatctgcccgccttggcctcccaaagtgctgggattacaggcctaagccaccatgcctggccGTG-TTTTTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180977981 121 + 198365852 caggatttcaccatgttggccaggctggtctcgaactcttgacctcaagtgagccgcccgccttggcctccgtaagtgctgggattacaggcgtgagccaccatgcctggccATG-TTTTTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174723711 121 + 192294377 caggatttcaccatgttggccaggctggtctcgaactcttgacctcaagtgagctgcccgccttggcctccgtaagtgctgggattacaggcgtgagccaccatgcctggccATG-TTTTTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163389350 121 + 180432695 caggatttcaccatgttggccaagctggtctcgaactcttgacctcaagtgagccgcccgccttggcctccgtaagtgctgggattacaggtgtgagccaccatgcctggccatg-tttttt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110421149 121 + 127223203 caggatttcaccatgttggccagcctggactcgaactcttgacctcaagtgagccgcctgccttggcctccgtaagtgctgggattacaggcgtgcgccaccatgcctggccATG-TTTTTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23768654 122 - 128169293 cagagtttcaccatgttggccaggctggtcttgaactcttgacctcaagtgatctgcccatcttggcctcccaaaatgatgggattacaggcgtgagccaccacgcctggccATGTTTTTTT
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40415415   0 + 149736546 C
e canFam3.chr16             52087890   1 -  59632846 I

a score=89392.000000
s hg38.chr7_GL383534v2_alt     38075 24 +    119183 ATTTTGAT--GTGCTGACATATTGTT
s panTro4.chr7             143137997 24 + 161824586 attttgat--GTGCTGACATATTGTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138958720 24 + 157549271 ATTTTGAT--GTGCTGACATACTGTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93079406 24 + 110113093 ATTTTGAT--GTGCTGACATACTGTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180978102 24 + 198365852 ATTTTGAT--GTGCTGACATACTGTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174723832 24 + 192294377 ATTTTGAT--GTGCTGACATACTGTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163389471 24 + 180432695 attttgat--gtgctGACATACTGTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110421270 24 + 127223203 ATTTTGAT--GTGCTGACATACTGTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23768776 24 - 128169293 ATTTTGAT--GTGCTAACATACTGTT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52087891 26 -  59632846 attttgataagtactaacaaattgtt
i canFam3.chr16            I 1 C 0
e mm10.chr6                 40415415  0 + 149736546 C

a score=5239910.000000
s hg38.chr7_GL383534v2_alt     38099 1532 +    119183 --TTGTAAAAAG-AAGACACTCCACTGTTATTTGTATCTGCAACC-ATAACGGTACCCTCTTCCCTGCATCTCCTAGGGTCTAACAGTTATGTTAATGAGC----TGTCCT--------CAAAAGCA-TGGGCCATTTTCTTTTTTCTCTCTTAGTCCCTC-ATCCCTGGACTCTTATGGG--GAAGAATACGAGTACATTTAGGTCAGATGCTGGTCACCTCCCTGTGGATTTGGAGATAATTCCAACAGAAATTGGACTCTGAAGG----AAAAAATGGGTCTAAGTTATGAGCAGACAGAAAGAGAACAGGACTCAGGTCAGTGCAAGCCCAGAGTACCTCTAATGGCCCTCTAACGATTTCTTAATGATTGTCTCTCAGCCTACGCcacggggtt-gggaaacctgcaaatgacaattcctaaactcatacgccaattggcttcctgttagagttcttca-atggagagcatggactgtagattgaaaggcagaaggaa------ATCTCTTCTGTTTCTTGCTCCAGCTAGTAT-TTCTCCAGGAGCAGAAGACACCTATGACTCCAGCCTCCAGCTTTC----CTTAGCATGCAcagcacacgtggagccacacctcctg------agaggtcccagcac----agatgcgcagtgcctccctcagcgatctgagcact-ggctgtgcagggacccctcctgcaggctcccatggttttgctcattctgcttctcttgctttgttaccctagccctaaggaagggtg------gcaggcagcctctaagatagtccccagtgatccccacctcttggtatttacagccttatgcaatcccct-cttgctcttgagtaatttgctt---ct----aagaaaatatggtgacattgcagggctgtcacttcc-atggttaggttacaaagggttctgacttccatcctgctagtatactc-t----cttactggcttagataaagcaagctcacatagtggagagacccacatggctaagaactgaggggagcccccaactaacagccagcaaggtactgaggccttcagttc-aaaacatccctcaagaaattcgatcctgccaacacccacctgatcttag--aggtggatacctccccagtcaaaccttcagatgagcccctaaccctggctgaaacc---------atctcatgagagattgtgacatagagaatctggttaag-ccatgctgggattcctgacttacagaagctgtgaaa-taataaatatgtactgtttt-aaaccattaatttgggg---atttgttccacagcaataaatcactaatatagggtgttagtcaggctattatctataattactaa-atat-gggttac-ctattccttttttactccttcagccttccaactcctatattactgatttcctgtcttaaattagttt-gaaataccta-catggtctc--ttta-cccgg-taagcccctaattggtacTTATTAGGATTCAAGCTCCAGGGTCTACTATTTAAAGCTCTCTACAATCTAATTTCAG--CC-------TATTTCTCCAATCACTTCCCTCAT-GCCAGCTGAC----------AAACATTTAATCCCAGCCAAACTA
s panTro4.chr7             143138021 1532 + 161824586 --TTGTAAAAAG-AAGACACTCCACTGTTATTTGTATCTGCAACC-ATAACAGTACCCTCTTCCCTGCATCTCCTAGGGTCTAACAGTTATGTTAATGAGC----TGTCCT--------CAAAAGCA-TGGGCCATTTTCTTTTTTCTCTCTTAGTCCCTC-ATCCCTGGACTCTTATGGG--GAAGAATACGGGTACATTTAGGTCAGATGCTGGTCACCTCCCTGTGGATTTGGAGATAATTCCAAGAGAAATTGGACTCTGAAGG----AAAAAATGGGTCTAAGTTATGAGCAGACAGAAAGAGAACAGGACTCAGGTCAGTGCAAGCCCAGAGTACCTCTAATGGCCCTCTAACGATTTCTTAATGATTGTCTCTCAGCCTATGCcacggggtt-gggaaacctgcaaatgacaattcctaaactcatacgccaattggcttcctgttagagttcttca-atggagagcatggactgtatattgaaaggcagaaggaa------ATCTCTTCCGTTTCTTGCTCCAGCTGGTAT-TTCTCCAGGAGCAGAAGATACCTATGACTCCAGCCTCCAGCTTTC----CTTAGCATGCAcagcacacgtggagccacacctcctg------agaggtcccagcac----agatgcgcagtgcctccctcagcgatctgagcact-ggctgtgcagggacccctcctgcaggctcccatggttttgatcattctgcttctcttgctttgttaccctagccctaaggaagggtg------gcaggcagcctctaagatagtccccagtgatccccacctcttggtatttacagccttatgcaatcccct-cttgctcttgagtaatttgctt---ct----aagaaaatatggtgacattgcagggctgtcacttcc-atggttaggttacaaagggttctgacttccatcctgctagtacactc-t----cttactggcttagataaagcaagctcacatagtggagagacccacatggctaagaactgagaggagcccccaactaacagccagcaaggtactgaggccttcagttc-aaaacagccctcaagaaatttgatcctgccaacacccacctgatcttag--aggtggatacctccccagtcaaaccttcagatgagcccctaaccctggctgatacc---------atctcatgagagattgtgacatagagaatctggttaag-ccatgctgggattcctgacttacagaagctgtgaaa-taataaatatgtactgtttt-aaaccattaatttgggg---atttgttccacagcaataaatcactaatatagggtgttagtcaggctattatctataattactaa-atat-gggttac-ctattccttttttactccttcagccttccaactcctatattactgatttcctgtattaaattagttt-gaaataccta-catggtctc--ttta-cctgg-taagtccctaattggtacTTATTAGGATTCAAGTTCCAGGGTCTACTATTTAAGGCTCTCTACAATCTAATTTCAG--CC-------TATTTCTCCAATCGCTTCCCTCAT-GCCAGCTGAC----------AAACATTTAATCCCAGCCAAACTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138958744 1510 + 157549271 --TTATAAAAAG-AAGACACTCCAC----ATTTGTATCTGCAACC-ATGACAGTACCCTCTTCCCTGCATCTCCTAGGGTCTAACAGTTATGTTAATGAGC----TGTCCT--------CAAAAGAA-TGGGCCATTTTC---TTTCTCTCTTAGTCCCTC-ATCCCTGGACTCTTATGGG--GAAGAATACGAGTACATTTAGGTCAGATGCTGGTCACCTCCCTGTGGATTTGGAGATAATTCCAATAGAAATTAGACTCTGAAGG----AAAAAATGGGTCTAAGTTATGAGCAG-CAGAAAGAGAACAGGACTCAGGTCAGTGCAAGCCCAGAGTACCTCTAATGGCCCTCTGACCATTTCTTAATGATTGTctctcagcctatgccacggggtt-gggaaacctgcaaatgacaattcctaaactcatatgccaattggcttcctgttagagtttttca-atggagagcatggactgtagattgaaaggcag-------------------TCCTTTCTTGCTCCAGCTAGTAT-TTCTCCAGCAGCAGAAGATACCTATGACTCCAGCCTCCAGCTTTC----CTTAGCATGCACAGCACAGGtggagccacacctcctg------agaggtcccagcat----agatgtgcagtgcctccctcagcgatctgagcact-gactgtgcagggacccctcctgcaggctcccgtggttttgatcactctgcttctcttgctttgttaccctagccctagggaagggtg------gcaggcagcctctaagatagtccccagtgatccccacctcttggtatttacagccttatgcaatcccct-cttgctcttgagtaatttgctt---ct----aagaaaatatggtgacattgcagggctgtcacttccaatgattagattacaaagggttctgacttccatcctgctagtacactc-t----cttactggcttagatgaagcaagctcacatagtggagagacccatatggctaagaactgaggggagcccccagctaacagccagcaaggtactgaggccttcagttc-aaaacagcccttaagaaattcgatcctgccaacaccca--tggtcttag--aggtggatacctccccagtcaaaccttcagatgagcccataaccctggctgatacc---------atctcataagagattgtgccatagagaatctggttaag-ccatgctgggattcctgacttacagaagctgtgaaa-taataaatatgtactgtttt-aaaccattaatttgggg---atttgttccacagcaatagatcactaatatacggtgttagtcaggctattatctataattactaa-atat-gggttac-ctattccttttttactccttcagccttccaactcctatattactgatttcctgtattaaattagttt-gaaataccta-catggtctc--tttt-cccgg-taaatccctaattggtacTTACTAGGATTCAAGTTCCAAGGTCTACTATTTAAGGCTCTCTACAATCTAATTTCAG--CC-------TATTTCTCCAATCACTTCCCTCAT-GCCAGCTGAC----------AAACATTTAATCCCAGCCAAATTA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93079430 1536 + 110113093 --TTGTAAAAAG-AAGACACTCCAC----ATTTGTATCTGCAACT-GTGACAGTACCCTCTTCCCTGCATCTCCTAGGGTCTAACAGTTATGTTAATGAGC----TGCCCT--------CAAAAGTA-TGGGCCATTTTCTTTTTTCTCTCTTAGTCCCTC-ATCCCTGGACTCTTATGGG--GAAGAATACGAGTACATTTAGGTCAGATACTGGTCACCTCTCTGTGGATTTGGAGATAATTCCAACAGAAATTGGACTCTGAAGG----AAAAAATGGGTCTAAGTTATGAGCAGACAGAAAGAGAACAGGACTCAGCTCAGTGCAAGCCCAGAGTACCTCTAATGGCCTTCTGACCATTTCTTAATGATTGTCTCTCAGCCTATGCcacggggtt-gggaaacctgcaaacgacaattcctaaactcatatgccaattggcttcctgttagagttcttca-atggagagcatggactgtagattgaaaggcagaaggaa------atctcttccgtttcttgctccagctagtat-ttctccagcagcagaagatacctatgactccagcctccaGCTTTC----CTTAGCACGCACAGCACAGGtggagccacacctcctg------agaggtcccaggat----agatgcgcagtgcctccctcagagatctgagcact-ggctgtgtggggacccctcctgcaggctcccatggttttgatcattctgcttctcttactttgttaccctagccctagggaagggtg------gcaggcagcctctaagatagtccccagtgatccccacctcttggtatttacagccttatgcaatcccct-cttgctcttgagtaatttgctt---ct----aagaaaatatggtgacattgcagggctgtcacttcc-acgattaggttacaaagggttctgacttccatcctgctagtacactc-t----cttactggcttagataaagcaagcttgcatagtggagagacccacatggctaagaactgaggggagcccccaactaacagccagcaaggtactgaggtcttcagttc-aaaacagccctcaagaaattcgatcctggcaacacccacatgatcttag--aggtggatacctccccagtcaaaccttcagatgagcccctaaccctggctgatacc---------aactcatgagagatcatgacatagagaatctcgttaag-ccatgctgggattcctgacttacagaagctgtgaaa-taataaatatgtagtgtttt-aaaccattaatttgggg---atttcttccacagcaatagatcactaatatagggtgttggtcaggctattatctataattactaa-atat-aggttac-ctattccttttctactccttcagccttccaactcctatattactgatttcctgtattaaattagttt-gaaatactca-cacggtctc--tttt-cccagttaagtccctaattggtacTTATTAGGATTCAAGTTCCAAGGTCTACTATTTAAGGCTCTCTACAAGCTAATTTCAG--CCGAAATAGTATTTCTCCAATCACTTCCCTCAT-GCCAGCTGAC----------AAACATTTAATCCCAGCCAAACTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180978126 1525 + 198365852 --TTGTAAAAAG-ATGACACTCCAC----ATTTGTATCTGCAACC-ATGACAGTACCCTCTTCCCTGCATCTCCTAGGGTCTAACAGTTATGTTAATGAGC----TGTCCT--------GAAAAGCA-TGGGCAGTTTTCTTTTTTCTCCCTTAGTCCCTC-ATCTCTGGACTCTTATGGG--GAGGAATATGAGTACATTTAGGTCACATGCAGGTCACCTCCCTGTAGATTTGGAGATAATTCCAACAGAAATTTGACTCTGAAGG----GAAAAATGGGTCTCAGTTATGAGCAGACAGAAAGAGAACAGGACTCAGGTCAGTGCAAGCCCAGAGTACCTCCAATGGCCCTCTGACCATTTCTTAATGATTGTCTCTCAGCCTATACCATGGGCTT-GGGAAACCTGTAAAGGacaattcctaaactcacacgccaattggcttcctgttagagttcttca-gtggagagcaaggattgtggattgaaaggcagaaggaa------ATCTCTTCAGCTTCttgctccagctagtat-ttctccagcagcagaagacacccacgactccagtctccagctttc----ctcagcatgcacagcacaggtgcagccacacctcctg------agaggtcccagcat----agatgcgcagtgcctccctcagtgatctgagtact-ggctgtgtagggacccctcctgcaggctcccatggttttgatcattctgcttctcttgctttgttaccccagccctaggggagggta------gaaggcagcctctaagatagtccccagtgatacccacctcttggtatttacagccttatgcgatcccct-cgtcctct----taatttgctt---ct----aagaaaatatggtgacattgcagggctgtcacttcc-atgattaggttacaaagggttctgacttccatcctgctagtacactc-t----cttactggcttagataaagcaacctcgcatagtggagagacccacatggctaagaactgaggggagcccccaactaacagctagcaaggtactgaggccttcagttc-aaaacagtcctcaagaaattcaatcctgccaacacccacatgatcttag--aggtggacacctccccagtcaaactttcagatgatcccctaaccctggctgatacc---------atctcatgagagatcatgacatagagaatctggttaag-ccatgctgggattcctgacttacagaagctgtgaaa-taataaatatatactgtttt-aaaacattaatttggggataatttgttccacagcaatagatgactaatatagggtgttagtcaggctattgtctatgattactaatatat-tggctac-ctattccttttctactccttcagccttccaactcctatattactgatttcctgtattaaaatagttt-gaaatacctagcatggtctc--tttt-cctgg-taagtccctaattggtacTTATTAGGATTCAAGTTCCAAGGTCTACTATTTAAGGCTCTCTACAATCTAATTTCAGAACC-------TAGTTCTCCAATCATTTCCCTCGT-GCCGGCTGAC----------------TTAATCCCAGCCAAACTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174723856 1519 + 192294377 --TTGTAAAAAG-ACGACACTCCAC----ATTTGTATCTGCAACC-ATGACAGTACCCTCTTCCCTGCATCTCCTAGGGTCTAACAGTTATGTTAATGAGC----TGTCCT--------CAAAAGCA-TGGGCAGTTTTCTTTTTTCTCCCTTAGTCCCTC-ATCTCTGGACTCTTATGGG--GAGGAATATGAGTACATTTAGGTCACATGCAGGTCACCTCCCTGTAGATTTGGAGATAATTCCAACAGAAATTTGACTCTGAAGG----GAAAAATGGGTCTCAGTTATGAGCAGACAGAAAGAGAACAGGACTCAGGTCAGTGCAAGCCCAGAGTACCTCCAATGGCCCTCTGACCATTTCTTAATGATTGTCTCTCAGCCTATACCATGGGCTT-GGGAAACCTGTAAAGGACAATTCCTAAACTCACACGCCAATTGGCTTCCTGTTAGAGTTCTTCA-ATGGAGAGCAAGGATTGTGGATTGAAAGGCAGAAGGAA------ATCTCTTCAGCTTCTTGCTCCAGCTAGTAT-TTCTCGAGCAGC---AGACACCCACGACTCCAGTCTCCAGCTTTC----CTCAGCATGCACAGCACAGGTGCAGCCACACCTCctg------agaggtcccagcat----agatgcgcagtgcctccctcagtgatctgagtact-ggctgtgtagggacccctcctgcaggctcccatggttttgatcattctgcttctcttgctttgttaccccagccctaggggagggta------gaaggcagcctctaagatagtccccagtgatacccacctcttggtatttacagccttatgcgatcccct-cgtcctct----taatttgctt---ct----aagaaaatatggtgacattgcagggctgtcacttcc-atgattaggttacaaagggttctgacttccatcctgctagtacactc-t----cttactggcttagataaagcaacctcgcatagtggagagacccacatggctaagaactgaggggagcccccaactaacagctagcaaggtactgaggccttcagttc-aaaacagtcctcaagaaattcaatcctgccaacacccacatgatcttag--aggtggacacctccccagtcaaactttcagatgatcccctaaccctggctgatacc---------atctcatgagagatcatgacatagagaatctggttaag-ccatgctgggattcctgacttacagaagctgtgaaa-taataaatatatactgtttt-aaaacattaatttgggg---atttgttccacagcaatagatgactaatatagggtgttagtcaggctattgtctatgattactaatatac-tggctac-ctattccttttctactccttcagccttccaactcctatattactgatttcctgtattaaaatagttt-gaaatacctagcatggtctc--tttt-cccgg-taagtccctaattggtacTTATTAGGATTCAAGTTCCAAGGTCTACTATTTAAGGCTCTCTACAATCTAATTTCAGAACC-------TAGTTCTCCAATCATTTCCCTCAT-GCCGGCTGAC----------------TTAATCCCAGCCAAACTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163389495 1526 + 180432695 --TTGTAAAAAG-ACGACACTCCAC----ATTTGTATCTGCAACC-ATGACAGTACCCTCTTCCCTGCATCTCCTAGGGTCTAACAGTTATGTTAATGAGC----TGTCCT--------CAAAAGCA-tgggcagttttcttttttctcccctagTCCCTC-ATCTCTGGACTCTTATGGG--GAGGAATATGAGTACATTTAGGTCACATGCAGGTCACCTCCCTGTAGATTTGGAGATAATTCCAACAGAAATTTGACTCTGAAGG----AAAAAATGGGTCTCAGTTATGAGCAGACAGAAAGAGAACAGGACTCAGGTCAGTGCGAGCCCAGAGTACCTCCAATGGCCCTCTGACCATTTCTTAATGATTGTCTCTCAGCCTATACCATGGGCTT-GGGAAACCTGTAAAGGACAATTCCTAAACTCACACGCCAATTGGCTTCCTGTTAGAGTTCTTCA-ATGGAGAGCAAGGATTGTGGATTGAAAGGCAGAAGGAA------ATCTCTTCGGCTTCTTGTTCCAGCTAGTAT-TTCTCCAGCAGCAGAAGACACCCACGACTCCAGTCTCCAGCTTGC----CTCAGCATGCACAGCACAGGTGCAGCCACACCTCCTG------AGAGGTCCCAGCAG----AGATGCGCAGTGCCTCCCTCAGTGATCTGAGTACT-GGCTGTGTAGGGACCCCTCCTGCAGGCTCCCATGGTTTTGATCATTCTGCTTCTCTTGCTTTGTTACCCCAGCCCTAGGGGAGGGTA------GAAGGCAGCCTCTAAGATAGTCCCCAGTGATACCCACCTCTTGGTATTTACAGCCTTATGCGATCCCCTCCGTCCTCT----TAATTTGCTT---CT----AAGAAAATATGGTGACATTGCAGGGCTGTCACTTCC-ATGATTAGGTTACAAAGGGTTCTGACTTCCATCCTGCTAGTACACTC-T----CTTACTGGCTTAGATAAAGCAACCTCGCATAGTGGAGAGACCCACACGGCTAAGAACTGAGGGGAGCCCCCAACTAACAGCTAGCAAGGTACTGAGGCCTTCAGTTC-AAAACAGTCCTCAAGAAATTCAATCCTGCCAACACCCACATGATCTTAG--AGGTGGACACCTCCCCAGTCAAACTTTCAGATGATCCCCTAACCCTGGCTGATACC---------ATCTCATGAGAGATCATGACATAGAGAATCTGGTTAAG-CCATGCTGGGATTCCTGACTTACAGAagctgtgaaa-taataaatatgtactgtttt-aaaacattaatttgggGATAATTTGTTCCACAGCAATAGATGACTAATATAGGGCGTTAGTCAGGCTATTGTCTATGATTACTAATATAT-TGGTTAC-CTATTCCTTTTCTACTCCTTCAGCCTTCCAACTCCTATATTACTGATTTCCTGTATTAAATTAGTTT-GAAATACCTAGCATGGTCTC--TTTT-CCCGG-TAAGTCCCTAACTGGTACTTATTAGGATCCAAGTTCCAAGGTCTACTATTTAAGGCTCTCTACAATCTAATTTCAGAACC-------TAGTTCTCCAATCATTTCCCTCAT-GCCGGCTGAC----------------TTAATCCCAGCCAAACTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110421294 1521 + 127223203 --TTGTAAAAAG-ACGACACTCCAC----ATTTGTATCTGCAACC-ATGACAGTACCCTCTTCCCTGCATCTCCTAGGGTCTAACAGTTATGTTAATGAGC----TGTCCT--------CAAAAGCA-CGGGCAGTTTTCTTTTTTCTCCCTTAGTCCCTC-ATCTCTGGACTCTTATGGG--GAGGAATATGAGTACATTTAGGTCACATGCAGGTCACCTCCCTGTAGATTTGGAGATAATTCCAACAGAAATTTGACTCTGAAGG----AAAAAATGGGTCTCAGTTATGAGCAGACAGAAAGAGAACAGGACTCAGGTCAGTGCAAGCCCAGAGTACCTCCAATGGCCCTCTGACCAT---TTAATGATTGTCTCTCAGCCTATACCATGGGCTT-GGGAAACCTGTAAAGGACAATTCCTAAACTCACACGCCAATTGGCTTCCTGTTAGAGTTCTTCA-ATGGAGAGCAAGGATTGTGGATTGAAAGGCAGAAGGAA------ATCTCTTCAGCTTCTTGCTCCAGCTAGTAT-TTCTCCAGCAGCAGAAGACACCCACGACTCCAGTCTCCAGCTTTC----CTCAGCATGCACAGCACAGGTGCAGCCACACCTCCTG------AGAGGTCCCAGCAT----AGATGCgcagtgcctccctcagtgatctgagtact-ggctgtgtagggacccctcctgcaggctcccatggttttgatcattctgcttctcttgctttgctaccccagccctaggggtgggta------gaaggcagcctctaagatagtccccagtgatacccacctcttggtatttacagccttatgcaatcccct-cgtcctct----taatttgctt---ct----aagaaaatatggtgacattgcagggctgtcacttcc-atgattaggttacaaagggctctgacttccatcctgctagtacactc-t----cttactggcttagataaagcaacctcgcatagtggagagacccacatggctaagaactgaggggagcccccaactaacagctagcaaggtactgaggccttcggttc-aaaacagtcctcaagaaattcaatcctgccaacacccacatgatcttag--aggtggacacctccccagtcaaactttcagatgatcccctaaccctggctgatacc---------atctcatgagagatcatgac-tagagaatctggttaag-ccatgctgggattcctgacttacagaagctgtgaaa-taataaatatgtactgtttt-aaaacattaatttggggataatttgttccacagcaatagatgactaatatagggcgttagtcaggctactgtctatgattactaatatat-tggttac-ctattccttttctactccttcagccttccaactcctatattactgattttctgtattaaattagttt-gaaatacctagcatggtctc--tttt-cccag-taagtccctacttggtacTTATTAGGATTCAAGTTCCAAGGTCTACTATTTAAGGCTCTCTACAATCTAATTTCAGAACC-------TAGTTCTCCAATCACTTCCCTCAT-GCCGGCTGAC----------------TTAATCCCAGCCAAACTA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23768800 1528 - 128169293 --TTTTAGAAAG-AAGACATTCCAC----ATTTCTATCTGCAACC-ACGACAGTACCCTTTTCCCTGCATCTCCTGGGGTCTAACAGGTATGTTCATGAGC----TATCCT--------CAAAAGCA-TAGGCAATTTTC-TTTTTCTCCCTTAGTCCCTC-ATCCCTGGACTCTTACGGG--GAGGAATACACATACATTTAGGTCAAATGCTGGTCACCTCCCTGTGTATTTGTTGATAATTCCAACAGAAATTTAGCTCTGAAGG-----AAAAATGGGCCCAAGTTATAAGCAGACAGAAAGAGAACAGGACTCAGGTCAGTGCAAGCCCAGAGTACCTCTAATGGCCCTCTGACCA---CTTAATTATTGTCTCTCAGCCTATGCTATgggcttggggaaacctccaaatgacatttcctaaa--cacatgccaattggcttcctgttagatttcttca-atggaaagcgaggactgcaggttgaaaggcagaaggaa------atctcttcagtttcttgctctggctagtat-ttctccagcagcagaagacacctgtgactccagcctccaGCTTTCCTTACTTAGCATGCACAGCACAGGtggagccacacctcctg------agaggttccagcat----aaatacatggtgcctccctcagagagctgagcact-ggctgtgcagggacccatcctgcaggctcccatgattttgatcatgcggcttctgttgctttgttaccccaaccctaggggagggtg------acgggcaaactctaagatagtcctcagtgatccccgcctcttggtatttacagccttatgcaatcctct-cttcctct-gagtaatttgctt---ct----aagaaaatgtggtgacattgcagggctgtcacttcc-atgattaggttacaaagggttctgacttccatcttgctagtacactc-t----cttactggcttaaataaggcaagcccccatactggagagacccatgtggctaagaactgagggtagcccctaattaacagccagcaaggtactgaagccttcagttcaaaaacagccctcaagaaatttgatcttgccaatacccacatgatcttag--aggtggataccttcccagtcaaaccttcagatgagccccaaaccctggctgatacc---------atctcatgagaga---tgacatagagaacctggttaatcccatgctgggattcctgacttacagaagctgtgaaattaacaaatatgtaatattttaaaaccattagttgggggataatttgttacacagcaatagaagactaatacagggtgttt----ggctcttagctataattactaatagat-tggttac-ctactccttttttactactttggccttccaactcctatattactgatatcctatattaaattagttt-gaattatctagcatggtctt--ttttccCCAG-TAAGTCCCTAATTAGTATTTATTAAGATTCAAGTTCCAA-GTCTACTATTAAAGGTTCTCTACGATCTAATTCCAA--CC-------TATTTCTCCAATCATTTCTCTCATGGCCAGCTGAC----------AAACATTTACTCCCAGCCAAACTA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40415415 1372 + 149736546 --CTGTGGCACT-GAGGCAC---------ATTTGTATCTTCAGCCTATATAAGTATCTTTCTACC-ACATCTGT--GAGTCTGACAGGTCTGTTAATAAGCTAGTTGTCTTTAATGGGGCAAAGCCA-AGTGCAAGTATCTTTTCTCTTTTTTCCCCCCTT----------TGCCTATGGGGTGAGGAAGCTAAGAACATTCAGGTCAAATGTTGGCCACCATCCCCTGGGTTTGGTGATAGC----AGAGTAACTTCATTCAGAAGA----AAA----GGGGCT-----------------------GACAGTGTCCCAATCAATAAATTCTCCAAATCCTTCTGATCATCGTATGCCC----CTTGCCAACCGTCTCTCAACCC-tatcacaggagc-aggaaatctgcatgctccatcccctggactcccaggccacctagtctcttgtta-agttctgcatatggggagccatgaattcagccatgaagaccggaggaaaggTGGATGTC-----CTTCATGTTACAGCTGCTTCATTCTCCAGCAGCAGGGAGCACTTCTCACACTAGCTGCCAGCCTCT----CT---------CAGCACAAGTCGGACCATATATTTAA------ACAGTACCAGGCTC----AGTGGAACACAGCGTCCCTCGGAGATACTGGCACA-GACAATGCAAGG-CCCCTCCTTCCTGCTTCCTGGGCTCTGAGCCTGATGTCACTCCTCCTTG--TGCCCTGGCCCTA----AAtatg------gcaagcagcatccaaggtaaggcct-gtggccc--------tggtatttacagccttgtgcaatcccct-cttcctctcgaggaacttgctt---ctaacaaagagactgtggctata-tacaggcctttcacgtct-acgattaggttac--agcgttctgactt-tattgtgctagcactctctt----tttgctgactttgatgaagcaaactgccaagctagatagccccacatggttgagagctgagggcaaac----actaata--------------gaggccttcagtgt---agcatcccttaagaaacttgctcctgtgggtgctcatacgagcttagaaaaacaggttcttgcctagttgaaccttgtgccgtgtctccaaccctggctggagccctga--aatctctcacagcagacc-cgagatcttggattcagataag-ccatgactggagtcctctc-cacagaaaccatggaa-ccatacacatgcacttctag-aagcttctaatcttgggag-atttggtaggcagcaatagcttgctaatgcGAGGTAGCA-----TCCGTTGTCTGAGATACCGAATGCATAGGGTTACTCTGTTCTCTGACTGCTCCTTCAGCCTC----------------------------TTGAATTCGTTT-TAAATACCCAACACACTCTT-GTTTT-GCTGA-TAACATCTTACTTATTACTTTT--------------------------------------------------------CT-------T-------------TTTCCTCTATGGCCAAATGACATTAAAAAAAAAAAAATCAGTCTCATTTAAA-TA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52087917 1531 -  59632846 ttttttaaaaagaaagaccattcac----atttccatctgcaacccgtcaaagtacccttccccTTGCATCAACCAGAGGTCGACATGTAAGTTAATGAGC----TGCCCTTGATGGAGCAAAGGCAGAAGGCAATTTTGCTTTCTCTCCCTCTGTCCCTCCCTCACTGGA---------G--AGAGGATCCGGGGACACCCAGGTCAGATGCTGGTCACCTCCCTGTGGGTTTG-AGACAGC-CCAGCAGCAATCTGATTCAGAAGGAAGGAAAAAATGGGTCAGAGTTAGGAGTGGTGAGAGAAAGAGCAGG--TTCAGTCAATACAGACCCAGAAGAGCCCTAATGACCCTCTGACCATTTCTTAATTATTGCCTCTCCGGGCATGCCACGGCGCG-GGGAAAccttta--cgctgtgtcctggactcctgtgccagctggcttcctggtatgttcctcct-cggggatgcaatgactggtgattagaaggcagaaggaagggaggagcTC-----------ACTCCTGCTGGTAT-TTTGCCAGCAGCAGAGGACACCTCTGATTCCAGCCTCCAGCTTCT----CCCAGCagccccagctccagctgagccacgccccccgccccccagaggggccagcatcagcaggtgcacggggcct------gagacatgggagcagggctgtgcaggg-cccctcct-caagctcccgtagttttgatagagt--catctctccctgtgttatcccagccct--gggagggtgcacacagcaggcagcctctaagagggccctcagcggtgccccctccttggtatttacagccttatggaatatccc---ttccctggaataattcactttaacc----aacagaacatggcaacaccgcaggactgtcacttcc---cattaggttacagaggattttgatttccatcttgctaggagactt-tttcacttgctgacttcgatgaagcaagtcaccatgtcggagagaccgacctggccatggactgggga-------ccaccaagaggcagc--ggaactgaaggccttagtcc---actagccctcaaggaaaccagccccctc-acaactgcataagcttgg--aagtggctacttccccagtcaagccttccgacaagacctcacccctggttgatgccttgactatgaactcataggagaccatgaagcagaggactagcccaag--catgcctgaattcccagctcacaggaactgtgaga-taataaatatgaactactgt-agaccactgatttgggggtaatttgtgacat-gtagtaaataactaatagaaggtggta--------accgtctagaattacaagtatct-agattcc-ttgctccctttttgctccttcagccttccaatgcctagattagggatctcctgtatcaaagtatcttgggaatatctaacatagtttgtgtttt-cctgg-caagacccccactggtgcTTCTT-GGGTTCAAATTCCATGGTCTAGTATTTACGATTCTCTACGATTTGGTTCCAA--CC-------TATTTTCCCAATCTTTTCTCTCTTGGTCAGTTGAC--------ATAGAAATTCAATCCCAGTCAACCTA
i canFam3.chr16            C 0 I 673

a score=107187.000000
s hg38.chr7_GL383534v2_alt     39631 27 +    119183 GTTTGCTCATGTCTCATGAACTTGTCT
s panTro4.chr7             143139553 27 + 161824586 GTTTGCTCATGTCTCATGAACTTGTCT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138960254 27 + 157549271 GTTTGCTCATGTCCCATGAAATTGTCT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93080966 27 + 110113093 GTTTGCTCATGTCCCATGAACTTGTCT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180979651 27 + 198365852 GTTTGCTCATGTCCCATGAACTTGTCT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174725375 27 + 192294377 GTTTGCTCATGTCCCATGAACTTGTCT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163391021 27 + 180432695 GTTTGCTCATGTCCCATGAACTTGTCT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110422815 27 + 127223203 GTTTGCTCATGTCCCATGAACTTGTCT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23770328 25 - 128169293 GTCTGCTCATGTCCCATGAACCTGT--
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40416787 27 + 149736546 ATTTGCTCTTGACCCATGAGCATGTCT
i mm10.chr6                C 0 I 454
s canFam3.chr16             52090121 27 -  59632846 GCCTGCTCCCGTGCCATGAGCCTGCTT
i canFam3.chr16            I 673 C 0

a score=417918.000000
s hg38.chr7_GL383534v2_alt     39658 126 +    119183 TGCATTTTTCCGTGTCCACATCTCTGCAAAGGCAATGAAgtggggcaggaaacatgcactggctgtggcactagacctctgtttaaatcttagctctaactcctattagctataagacctaaagca
s panTro4.chr7             143139580 126 + 161824586 TGCATTTTTCCGTGTCCACATCTCTGCAAAGACAATGAAgtggggcaggaaacatgcactggctatggcactagacctctgtttaaatcttagctctaactcctattagctataagacctaaagca
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138960281 126 + 157549271 TGCATTTTTCCGTGTCCACATCTCTGTAAAGACAACGAAgtggggcaggaaacatgcactggctgtggcactagacctctgtttaaatcttagctctaacttctattagctataagacctaaagca
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93080993 124 + 110113093 TGCATTTTTCCATGTCCACATCTCTGCAAAGACAATGAAgtggggcaggaaacatgcactggctgtggcactagac--ctgtttaaatcttagctctaactcctattagctataagacctaaagca
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180979678 125 + 198365852 TGCATTTTTCCGTGTCCATATCTCTGCAAAGACAATAAAgtggggcaggacacatgcactggctgtagcactagacctctgtttaaaacttggctgtaactcctattagctataagacctaaagc-
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174725402 125 + 192294377 TGCATTTTTCCGTGTCCATATCTCTGCAAAGACAATAAAgtggggcaggacacatgcactggctgtagcactagacctctgtttaaaacttggctctaactcctattagctataagacctaaagc-
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163391048 125 + 180432695 TGCATTTTTTCGTGTCCACATCTCTGCAAAGACAATAAAGTGAGGCAGGACACATGCACTGGCTGTGGCTCTAGACCTCTGTTTAAACCTTGGCTCTAACTCCTATTAGCTGTAAGACCTAAAGC-
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110422842 125 + 127223203 TGCATTTTTCCGTGTCCCCATCTCTGCAAAGACAATAAAGTGGGGCAGGACACATgcactggctgtagcactagacctctgtttaaaacttggctctaactcctattagctataagacctaaagc-
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23770353 123 - 128169293 ---GTTTTTCCATGTCCATATCTCTGTAAAGACAGTGGAgtggggcaggaaacactcactgactgtggcaccagacctctgttcaaatcttggccctatctcctattagctataagacctaaagca
i calJac3.chr8             C 0 I 645
s mm10.chr6                 40417268  94 + 149736546 tgggtcctttcTTGTCCACATCTT-------------AAgtagggcagagagtgaacactggctttgccac-agtcctgggtttagattctgcctgt------------ct------cccaaagca
i mm10.chr6                I 454 C 0
s canFam3.chr16             52090148 116 -  59632846 TGTGCTTTCTCACATCTACATCTCCATGGGG------GGGTGGGGGGG----CAagcaccggctttggcacgggtcctatgtttaaatcctggccctatctcctactagctgtaaggccttacgta
i canFam3.chr16            C 0 C 0

a score=146550.000000
s hg38.chr7_GL383534v2_alt     39784 48 +    119183 agtcactagccc-----tttataagcctcggttgttttcgctggaaaacaagg
s panTro4.chr7             143139706 48 + 161824586 agtcactagccc-----tttataagcctcagttgctttcgctggaaaacaagg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138960407 41 + 157549271 agtcactagccc-----tttataagcctcggttgcttTCGCTGG-------GG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93081117 48 + 110113093 agtcactagccc-----tttataagcctcggttgcttttgctggaaaacaagg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180979803 48 + 198365852 agtcactagccc-----tttataagctccggttgctttcgctggaaaacaagg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174725527 48 + 192294377 agtcactagccc-----tttataagctccggttgctttcgctggaaaacaagg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163391173 48 + 180432695 AGTCACTAGCCC-----TTTATAAGCTCCGGTTGCTTTCGCTGGAAAACAAGA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110422967 48 + 127223203 agtcactagccc-----tttataagctccggttgctttcactggaaaacaagg
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40417362 53 + 149736546 agtcactaaaccatttattgataagcttcaattgctttaactagaaaacaaag
i mm10.chr6                C 0 C 0
s canFam3.chr16             52090264 48 -  59632846 agtcaccgaacc-----tttacagacctccgttggttcatgtggaaaacaggg
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23770476 645 - 128169293 I

a score=525552.000000
s hg38.chr7_GL383534v2_alt     39832 183 +    119183 aAT----aaaaaaaaaaaaa----------caaaaaaCA----------TTTACTTTTATTTTAGAGAATGCTGCAACAGGTACAGATAAATAGCTGGCACAATGC-ATAACT-CCCAGAAGGTGCTGAGAAAGTGACAGACCATGGTTCTCACTGCTGCTCACACCTTTCCTGGTTCTGGAATCAGCATTCCTCACTTTCCACCTAGC
s panTro4.chr7             143139754 185 + 161824586 atTT--AAAAAAACAAAAAA----------CAAAAAACA----------TTTACTTTTATTTTAGAGAATGCTGCAACAGGTACAGATAAATAGCTGGCACAATGC-ATAACT-CCCAGAAGGTGCTGAGAAAGTGACAGACCATGGTTCTCACTGCTGCTCACACCTTTCCTGGTTCTGGAATCAGCATTCCTCACTTTCCACCTAGC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138960448 187 + 157549271 ATTT-aaaaaaaaaaaaaaa----------aaaaaaaCA----------TTTACTTTTATTTTAGAGAATGCTGCAACAGGTATAGATAAATAGCTGGCACAATGCAATAACT-CCCAGAAGGTGCTGAGAAAGTGACAGACCATGGTTCTCACTGCTGCTCACACCTTTCCTGGTTCTGGAATCAGCATTCCTCACTTTCCACCTAGC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93081165 187 + 110113093 atTTaaaaaaaaaacaaaaa----------acaaaaCCA----------TTTACTTTTATTTTAGAGAATGCTGCAACAGGTATAGATAAATAGCTGGCACAATGC-ACAACT-CCCAGAAGGTGCTGAGAAAGTGACAGACCATGGTTCTCACTGCCGCTCACACCTTTCCTGGTTCTGGAATCAGCATTCCTCACTTTCCACCTAGC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180979851 170 + 198365852 atta---------------------------aaaaaaca----------tttacttttattgtagagaatgctgcgacaggtatagataaatagctggcacaatgc-gtaact-cccagaaggtgctAAGAGAGTGACAGACCATGGTCCTCACTGCTGCTCACACCTTTCCTGGTTCTGGAATCAGCAATCCTCACTCTCCACCTAGC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174725575 170 + 192294377 atta---------------------------aaaaaaca----------tttacttttattgtagagaatgctgcgacaggtatagataaatagctggcacaatgc-gtaact-cccagaaggtgctAAGAGAGTGACAGACCATGGTCCTCACTGCTGCTCACACCTTTCCTGGTTCTGGAATCAGCAATCCTCACTCTCCACCTAGC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163391221 170 + 180432695 ATTg---------------------------aaaaaaca----------tttacttttattgTAGAGAATGCTGCCACAGGTATAGATAAATAGCTGGTACAATGC-GTAACT-CCCAGAAGGTGCTAAGAGAGTGACAGACCATGGTTCTCACTGCTGCTCACACCTTTCCTGGTTCTGGAATCAGCAGTCCTCACTCTCCACCTAGC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110423015 170 + 127223203 atta---------------------------aaaaaaca----------tttacttTTATTTTAGAGAATGCTGCAACAGGTATAGATAAATAGCTGGCACAATGC-GTAACT-CCCAGAAGGTGCTAAGAGAGTGACAGACCATGGTTCTCACTGCTGCTCACACCTTTCCTGGTTCTGGAATCAGCAATCCTCACTCTCCACCTAGC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23771121 186 - 128169293 ------aaaaaaacagaaaaaGCAAGGATTAAAAAAACA----------TTTACTT------TAAAGAATGCTGCAACAAGTACAGAGAAATAGCTGGCACAATGC-CTAACTCCCCAGAAGGTGCTGAGAAAGTGACAGACCATGGTTCTCACTGCTGTTCACACCTTTCCTGGTTCTGGAATGAGCATTTCCCACTTTCCACCTAGC
i calJac3.chr8             I 645 C 0
s mm10.chr6                 40417415 151 + 149736546 ---------------------------attaataaaacaaccttctcctgttaatcttacTTT--------------TAAGTATTGATACAT---TAGCATAATGT-CTAACT-CATAGGCTATGCTAAGAAAGTA--GGACCATGCCCCAC-CTCCAGCCAACA---------GGTCTGGAATTAGCACCCCTTCTTTTCTACATAGG
i mm10.chr6                C 0 C 0
s canFam3.chr16             52090312 138 -  59632846 -------------------------------atgaGACA----------AT--CGTTCACTTTAAAAAGTGCTGCAACGGGTACAGATAACTAGCTAGCAGGATGG---------------GGTGC----AGGGTCACGGACCGTGGTCC---------CACGAGCCCTGCCTCAGTCTGGAATTAGGATCCCTCACCTCTCGCCCAGC
i canFam3.chr16            C 0 I 392

a score=88988.000000
s hg38.chr7_GL383534v2_alt     40015 26 +    119183 CAAATAC-TCAGGGACTGCGTCCTCTC-
s panTro4.chr7             143139939 26 + 161824586 CAAATAC-TCAGGGACCGCGTCCTCTC-
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138960635 26 + 157549271 CAAATAC-TCAGGGACCGCGTCCTCTC-
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93081352 26 + 110113093 CAAATAC-TCGGGGACCGCGTCCTCTC-
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180980021 26 + 198365852 CAAATAC-TCAGGGACCGCATCCTCTC-
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174725745 26 + 192294377 CAAATAC-TCAGGGACCGCATCCTCTC-
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163391391 26 + 180432695 CAAATAC-TCAGGGACCGCATCCTCTC-
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110423185 26 + 127223203 CAAATAC-TCAGGGACCGCATCCTCTC-
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23771307 25 - 128169293 CAAATAC-TCAGAGGCCGCGT-CTCTC-
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40417566 27 + 149736546 CAAATGCTTTAGTGACCATCTCCTGTC-
i mm10.chr6                C 0 I 322
s canFam3.chr16             52090842 28 -  59632846 CAAATACTTTAGGGACCCAACTCTTCTT
i canFam3.chr16            I 392 C 0

a score=2888844.000000
s hg38.chr7_GL383534v2_alt     40041 781 +    119183 CTAAGGCATC-TTCCCAGAGTTCTCCCTTGGACTCTTGGCATAATTTCTCTACCAGGGGAGCCCTAGGTTTCCATGGAAATATCCTGTGACCAACCACAGGAGACAGAGAGGGAAGAGAAAGAGGAGATTCATGTTCTTAGTCATATTTGCACCCTTCCAACACCTAACGCTTTGCTGGGTGTTTTGCTAACTGTAAATAGGCATATTCTAGTACCAAAGCCAAAGTACTTCAGGAACAAATACAGAACGAAGTAACATCAGAAGTGTCTTAACTAAGAAATGTCATACTTCTTCATCAGACT-----CTTCATCTTT--AGTTCAAATGTCTAGTGTTAAAATATCAGAAGCAATCAACAGAATTAAATCTATCTTTT-----------------CACAACTGGCCTAT----------CACACACGCCTTTATACTATGATTACAGAAGTGTCTAGAAAGCATATTGTTTAAGATAACTTGCCTTATGTTTTAAAA-AAA-CC--AAATGCTTATGTTGCAACTCTGTTCTATCAAAAGTAGACATTTTGTATGATCCAAAGACATAAATTTTTTATTCATTAAAA----AGTAATCAACAGCTACTATTCCCAGATACAGATCCAGTATAGTGTAAGAAAAGCAGGGCTAACCTCACCTTCATCTCAGGGTACATGTATCGGTGGATGGAAGGCAGCCAGTAGACAGGGGGCAGGCTGCTGCCTCTGCCGGGACCAGCATGGAGCACCCCCTTTTTGTCCTCATAGAAGGCAGCCAGATGAGAGTAATGTCCTGGCATCTCCAACTGGTGCCTGCAGAAAA
s panTro4.chr7             143139965 781 + 161824586 CCAAGGCATC-TTCCCAGAGTTCTCCCTTGGACTCTTGGCATAATTTCTCTACCAGGGGAGCCCTAGGTTTCCATGGAAATATCCTGTGACCAACCACAGGGGACAGAGACAGAAGAGAAAGAGGAGATTCATGTTCTTAGTCATATTTGCACCCTTCCAACACCTAACGCTTTGCTGGGTGTTTTGCTAACTGTAAATAGGCATATTCTAGTACCAAAGCCAAAGTACTTCAGGAACAAATACAGAATGAAGTAACATCAGAAGTGTCTTAACTAAGAAATGTCATACTTCTTCATCAGACT-----CTTCATCTTT--AGTTCAAATGTCTAGTGTTAAAATATCAGAAGCAATCAACAGAATTAAATCTATCTTTT-----------------CACAACTGGCCTAT----------CACACACGCCTTTATACTATGATTACAGAAGTGTCTAGAAAGCATATTGTTTAAGATAACTTGCCTTATGTTTTAAAA-AAA-CC--AAATGCTTATGTTGCAACTCTGTTCTATCAAAAGTAGACATTTTGTATGATCCAAAGACataaattttttattcattaaaa----attaatCAACAGCTACTATTCCCAGATACAGATCCAGTATCATGTAAGAAAAGCAGGGCTAACCTCACCTTCATCTCAGGGTACATGTATCGGTGGATGGAAGGCAGCCAGTAGACAGGGGGCAGGCTGCTGCCTCTGCCGGGACCAGCATGGAGCACCCCCTTTTTGTCCTCATAGAAGGCAGCCAGATGAGAGTAATGTCCTGGCATCTCCAACTGGTGCCTGCAGAAAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138960661 777 + 157549271 CCAAGGCATC-TTCCCAGAGTTCTCCCTTGGACTCTTGGCATAATTTCTCTACCAGGGGAGCCCTAGGTTTCCATGGAAATATCCTGTGACCAACCACAGGGGACAGAGAGGGAAGAGAAAGAGGAGATTCATGTTCTTAGTCATATTTGCACCCTTCCAACACCTAACGCTTCACTGGGTGTTTTGCTAACTGTAAATAGGCATATTCTAGTACCAAAGCCAAAGTACTTCCGGAACAAATACAGAATGAAGTAACATTAAAAGTGTCTTAACTAAGAAATGTCATACTTCTTCATCAGACT-----CTTCATCTTT--AGTTCAAATGTCTAGTGTTAAAATATCAGAAGCAATCAACAGAATTAA----ATCTTTT-----------------CACAACTGGCCTAT----------CACACACGCCTTTATACTATGATTACAGAAGTGTCTGGAAAGCATATCGTTAAAGATAACTTGCCTTATGTTTTAAAC-AAA-CC--AAATGCTTATGTTGCAACTCTGTTCTATCAAAAGTAGACATTTTGTATGATCCAAAGACataaattttttattcattaaaa----attaatCAACAGCTACTATTCCCAGATACAGATCCAGTATCGTGTAAGAAAAGCAGGGCTAACCTCACCTTCATCTCAGGGTACATGTATCGGTGGATGGAAGGCAGCCAGTAGACAGGGGGCAGGCTGCTGCCTCTGCCAGGACCAGCATGGAGCACCCCCTTTTTGTCCTCATAGAAGGCAGCCAGATGAGAGTAATGTCCTGGCATCTCCAGCTGGTGCCTGCAGAAAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93081378 779 + 110113093 CCAAGGCATC-TTCCCAGAGTTCTCCCTTGGACTTTTGGCTTAATTTCTCTACCAGGGGAGCCCTAGGTTTCCATGGAAATATCCTGTGACCAACCACAGGGGACAGAGAGGGAAGAGAAAGAGGAGATTCATGTTCTTAGTCATATTTGCACCCTTCCAACACCTAATGCTTCGCTGGGTGTTTTGCTAACTGTAAATAGGCATATTCTAGTACCAAAGCCAAAATACTTCAGGAACAAATACAGAACGAAGTAACATCAAAAGTGTCTTAACTAAGAAATGTCATACTTCTTCATCAGACT-----CTTCATCTTT--AGTTCAAATGTCTAGTGTTAAAATATCAGAAGCAATCAACAGAATTAAATCTATCTTTT-----------------CACAACTAGCCTAT----------CACACACGCCTTTATACTATGATTACAGAAGTGTCTAGAAAGCATATTGTTTAAGATAACTTGCCTTATGTTTTAAAC-AAA-CC--AAATGCTTATGTTGCAACTCTGTTCTATCAAAAGTAGACATTTTTTATGATCCAAAGAC--AAATTTTTTATTCATTAAAA----ATTAATCAGCAGCTACTATTCCCAGATACAGATCCAGTATCGTGTAAGAAAAGCAGGGCTAACCTCACCTTCATCTCAGGGTACATGTATCGGTGGATGGAAGGCAGCCAGTAGACAGGGGGCAGGCTGCTGCCTCTGCCGGGACCAGCATGGAGCACCCCCTTTTTGTCCTCATAGAAGGCAGCCAGATGAGAGTAATGTCCTGGCATCTCCAGCTGGTGCCTGCAGAAAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180980047 759 + 198365852 CTAAGACATCTTTCCCAGAGTTCTCCCTTGGACTCTTGGCATAATTTCTCTACCAGAGGAGCCCTAGGTTTCCATGGAAACATCCTGTGGCCAACCACAGGGGACAGAGAAGAAAGAGAAAGAGGAGATTCATGTTCTTAGTCATATTTGCACCCTTCCAACACCTAACGCTTCGCTGGGTGTTTTGCTAACTGTA-------------------CAAAGCCAAAGTACTTCAGAAACAAATACAAAATGAAGTAACATCAAAAGTATATTCACTAAGAAATGTCATACTTATTCATCAAACT-----CTTCATCTTT--AGTTCAAATGTCTGGTGTTAAAATATCAGAAGCAATCAACAGAAGTAAATCCATCTTTT-----------------CACGACTGGCCTAT--------------CACGCCTTTATACTATGATTACAGAAGTGTCTAGAAAGCATATTGTTTAAGATAACTTGCTTTATGTTTTAAAC-AAA-CC--AAATGCCTATGTTGCAACTCTACTCTATCAAAAGTAGATATTTTGTATGATCCAAAGACATAAATGTTTTATTCATTAAAA----ATTAATCGACAGCTACTATTCCCAGATACAGATCCAGTATCGCGTAAGAAAAGCAGGGCTAACCTCACCTTCATCTCAGGGTACATGTATCGGTGGATGGAAGGCAGCCAGTAGACAGGGGGCAGGCTGCTGCCTCTGCCGGGACCAGCATGGAGCACCCCCTTTTTGTCCTCATAGAAGGCGGCCAGATGAGAGTAATGTCCTGGCATCTCCAGCTGGTGCCTGCAGAAAA
i rheMac3.chr3             C 0 I 44
s macFas5.chr3             174725771 759 + 192294377 CTAAGACATCTTTCCCAGAGTTCTCCCTTGGACTCTTGGCATAATTTCTCTACCAGAGGAGCCCTAGGTTTCCATGGAAACATCCTGTGGCCAACCACAGGGGACAGAGAAGAAAGAGAAAGAGGAGATTCATGTTCTTAGTCATATTTGCACCCTTCCAACACCTAACGCTTCGCTGGGTGTTTTGCTAACTGTA-------------------CAAAGCCAAAGTACTTCAGAAACAAATACAAAATGAAGTAACATCAAAAGTATATTCACTAAGAAATGTCATACTTATTCATCAAACT-----CTTCATCTTT--AGTTCAAATGTCTGGTGTTAAAATATCAGAAGCAATCAACAGAAGTAAATCCATCTTTT-----------------CACGACTGGCCTAT--------------CACGCCTTTATACTATGATTACAGAAGTGTCTAGAAAGCATATTGTTTAAGATAACTTGCTTTATGTTTTAAAC-AAA-CC--AAATGCCTATGTTGCAACTCTACTCTATCAAAAGTAGATATTTTGTATGATCCAAAGACATAAATGTTTTATTCATTAAAA----ATTAATCGACAGCTACTATTCCCAGATACAGATCCAGTATCGCGTAAGAAAAGCAGGGCTAACCTCACCTTCATCTCAGGGTACATGTATCGGTGGATGGAAGGCAGCCAGTAGACAGGGGGCAGGCTGCTGCCTCTGCCGGGACCAGCATGGAGCACCCCCTTTTTGTCCTCATAGAAGGCGGCCAGATGAGAGTAATGTCCTGGCATCTCCAGCTGGTGCCTGCAGAAAA
i macFas5.chr3             C 0 I 44
s papAnu2.chr3             163391417 774 + 180432695 CTAAGACATCTTTCCCAGAGTTCTCCCTTGGACTCTTGGCATAATTTCTCTACCAGAGGAGCCCTAGGTTTCCATGGAAACCTCCTGTGGCCAACCACAGgggacagagaagaaagagaaagaggagattcATGTTCTTAGTCATATTTGCACCCTTCCAACACCTAACGCTTCGCTGGGTGTTTTGCTAACCATAAACAGGCGTATTCTAGTACCAAAGCCAAAGTACttcagaaacaaatacaaaatgaagTAACATCAAAAGCATATTCACTAAGAAATGTCA----TATTCATCGAACT-----CTTCATCTTT--AGTTCAAATGTCTGGTGTTAAAATATCAGAAGCAATCAACAGAATTAAATCCATCTTTT-----------------CACGACTGGCCTAT--------------CACGCCTTTATACTATGATTACAGAAGTGTCTAGAAAGCATATTGTTTAAGATAACTTgctttatgttttaaag-aaa-cc--AAATGCTTATGTTGCAACTTTACTCTATCAAAAGTAGATATTTTGTATGATCCAAAGAcataaattttttattcattaaaa----attaatcaacaGCTACTATTCCCAGATACAGATCCAGTATCGCGTAAGAAAAGCAGGGCTAACCTCACCTTCATCTCAGGGTACATGTATCGGTGGATGGAAGGCAGCCAGTAGACAGGCGGCAGGCTGCTGCCTCTGCCGGGACCAGCATGGAGCACCCCCTTTTTGTCCTCATAGAAGGCGGCCAGATGAGAGTAATGTCCTGGCGTCTCCAGCTGGTGCCTgcagaaaa
i papAnu2.chr3             C 0 I 470
s chlSab2.chr21            110423211 777 + 127223203 CTAAGACATCTTTCCCAGGGTTCTCCCTTGGACTCTTGGCATAATTTCTCTACCAGGGGAGCCCTAGGTTTCCATGGAAACATCCTGTGGCCAACCGCAGGGGACAGAGAAGAAAGAGAAAGAGGAGATTCATGTTCTTAGTCATATTTGCACCCTTCCAACACCTAACGCTTCGCTGGGTGTTTTGCTAACTGTAAATAGGCATATTCTAGTACCAAAGCCAAAGTACTTCAGAAACAAATACAAAATGAAGTAACATCAAAAGCATATTCACTAAGAAATGTCATACTTATTCATCGAACT-----CTTCATCTTT--AGTTCAAATGTCTGGTGTTAAAATATCAGAAGCAATCAACAGAAGTAAATCCGTCTTTT-----------------CACGACTGGCCTAT--------------CACGCCTTTATACTATGATTACAGAAGTGTCTAGAAAGCATATTGTTTAAGATAACTTGCTTTATGTTTTAAAC-AAA-CC--AAATGCTTATGTTGCAACTCTACTGTATCAAAAGTAGATATTTTGTATGATCCAAAGACA-AAATTTTTTATTCATTAAAA----ATTAATCAACAGCTACTATTCCCAGATACAGATCCAGTATCGTGTAAGAAAAGCAGGGCTAACCTCACCTTCATCTCAGGGTACATGTATCGGTGGATGGAAGGCAGCCAGTAGACCGGGGGCAGGCTGCTGCCTCTGCCGGGACCAGCATAGAGCACCCCCTTTTTGTCCTCATAGAAGGCGGCCAGATGAGAGTAATGTCCTGGCATCTCCAGCTGGTGCCTGCAGAAAA
i chlSab2.chr21            C 0 I 38
s calJac3.chr8              23771332 777 - 128169293 CCAAGGCATC--TCCCAGGGTTCTCCCCTGGACTCTTGGCATAATTTCTCTACCAGGGGAGGCCTAGGTTTCCACGGAAATATCTTGTGACCAACCACAGGGGAAGCAGAAGGAAGAGAAAGAGGAGATTCATGTTCTTAGTCATATTTGCACCCTTCCGACACCTAACGCTTTGCCGGGTGTTTTGCTAACTGTAAACAGGCATATTCTCGTACCAAAGCCAAAGTACTTCAGAAACAAATATAAAATGAAGTAAAATTTGAAGTATCTTAACTAAGAAATGTCA----TATTCATCAAGCGCTTCACTTCATCTTT--AGTTCAAATGTCTAGTGTTAAAATATCAGAAGAAATCAACAGAATTAAATCCATCTTTT-----------------CACAACTCATCTAT----------CACTCTCACCTTAATACAATGATTACAGAGGTGTCTAGAAAGCATATTGTTTAAGATAACTTGCCTTATGTTTTAAACAAAA-TC--AAATGCTTATGTTGCAACTC-----TATCAAAAGCAGGCATTTTGTATGATCCAAAGACATACTTTTTATATTCATTAAAA----CTTAATCAACAGCTACTATTCCTAGATACAGATCCAATATCATGTAAGAAGAGCAAGGCTAACCTCACCTTCATCTCAGGGTACATGTATCGGTGGATAGAAGGCAGCCAGTAGACAGGTGGCAGGCTGCTCCCTCTTCCAGGACCAGCATGGAGCACCCCCTTTTTGTCTTCATAGAAGGCAGCCAGATGAGAGTAATGTCCTGGCATCTCCAGCTGGTGCCTGCAGAAAA
i calJac3.chr8             C 0 I 12
s mm10.chr6                 40417915 737 + 149736546 ctaagTAATG-TCCCAAGACACCGTCTATAAACTCAT-GCATTATTTCTTTACAAAGGGAGTCCTAAGCTT-CACTGAAATATCTTGTGCCCAGCCACAG--AACAGGGAGAAAGGAGAAATAGTAGATTCGTGTTCTTAGACCCTTTTATATCTTCTGACTACCCACTGTGTGGCCAGATTTCCTGTTGATATTAAACAG--AGATGCTAGTA-TAAATGCAAAGGATGCAATAA--AAATTCCGAATAA---AACGTCAGAAATAACATAGCTAAGAAATATTCCGTCTGCCCTTCAAACT-----CTACATCCTT---------ATGCTTGGCTTTACATTAGCAGACACAATCAAAAGCA-----TCCGCCCTCCTC------AGAGTCCAGCATGAGCGGCCCAG----------CATATGTGGCTCTGTGC-ATGGTTACAGAAG----------GCATATTGTTTAAGATCATTTACCTTATGTTTTAAAT-GAA-CCCAAAATGCTTATATCA-AACCCAATTCTATCAAAGGCAGA-ATTCTGCATGAGGCTGAAGCATAATTTCTTTATCATTTAAAA----ATGAACCCATAATGACTATCCCCAGACACA------------TGAGAGAACA-----GCCAGCCTCACCTTCATCTCTGGATACATATAGCGGTGAATAGAAGGCAACCAGTAGACAGGTGGCAAGCTGCCACCCCTCCCGGGGCCAGCGTGGAGCACCCCTTTCTTGTCTTCATAGAATGCAGCCAGATGAGAGTAATGTCCTGGCATCTCCAGCTGGTGTCTGTGTA---
i mm10.chr6                I 322 C 0
s canFam3.chr16             52090870 764 -  59632846 CCAAGATGCC-TTTCCAGAGTTTTCCCTTAAAGCCCTGGCATGATTTCTCCACCAG-GGAGCCCT--GTATCCCCTGAAGTATCTTGTGACCACCTCCAGGGGA---------GGGAGGAGGAGGAGCTTCCCGTTCATACTCCTCTCTGTACCCTCCCGACACCTAACGC-------------TTGTGAACTGTCAACGAACACATCCAGGTT-CACAGGCAAAGTACTTCAGAAA-AAACACATAGTAAAGGAATATCAGGAATACAAAAACTATGAACTATTGTATCTATTCATCAAATT-----CTTCATCTTTTCAGTTCTGGTGTCTGGTTTTAAAATATC-GAAGCCAACAACAGAATCAAATCCACCTTTTCCCTGCTAGGGACCCACCACGCCTGGCCTGCCTCACATCACCATACATGGCTTTGCACCATGGTCAGAGCAGAGTCTAGAAAGCACATCG-----------TTGCCTTGTGTTTTAAAA-GGATCC--AAATGTTTGGGTCAGAAACC-----TATCAAAGTCAGACTCTGGGCATGAGCCCAAGACATAAATTCCTTATGAATTAAAAAAATAATAATCAACAGCCACCGTAGC-ACACACGAGCCCAGGACCATGTGTG---CGTGTGGCCAGCCCTACCTTCATCTCAGGGTACATGTATCGGTGGATGGAAGGCAACCAGTAGACGGGGGGCAGGCTCCCACCTCTCCCCGGACCGGCATGGAGCACCCCTTTCTTGTCCTCATAGAATGCAGCCAGGTGGGAGTAATGTCCTGGCGTCTCCAGCTGGTGTCTGCAAA---
i canFam3.chr16            C 0 C 0

a score=68825.000000
s hg38.chr7_GL383534v2_alt     40822 29 +    119183 acacacacacacacac------------------------------------------------------acacacacacaca
s panTro4.chr7             143140746 83 + 161824586 acacacacacacacacgcatgcatgcatacacacacacacacacacacacacacacacacacacacacacacacacacacaca
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138961438 29 + 157549271 acacacaggcatgcat------------------------------------------------------acacacacacaca
i ponAbe2.chr7             C 0 I 326
s nomLeu3.chr13             93082157 73 + 110113093 acacacacacacacgcatgcatacacacacacacacacacacacacacacacacacacac----------acacacacacaca
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180980850 29 + 198365852 acacacacacacacac------------------------------------------------------acacaaacacaca
i rheMac3.chr3             I 44 C 0
s macFas5.chr3             174726574 29 + 192294377 acacacacacacacac------------------------------------------------------acacacacacaca
i macFas5.chr3             I 44 C 0
s papAnu2.chr3             163392661 29 + 180432695 acacacacacacacac------------------------------------------------------acacacacacaca
i papAnu2.chr3             I 470 C 0
s chlSab2.chr21            110424026 29 + 127223203 acgaacacacacacac------------------------------------------------------acacacacacaca
i chlSab2.chr21            I 38 C 0
s calJac3.chr8              23772121 29 - 128169293 ATGCATGCGcacacac------------------------------------------------------acacacacacaca
i calJac3.chr8             I 12 C 0
s mm10.chr6                 40418652 13 + 149736546 ----------------------------------------------------------------------ACACACATGCACA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52091634 17 -  59632846 ------------ACAC------------------------------------------------------ACACACACACACA
i canFam3.chr16            C 0 C 0

a score=87190.000000
s hg38.chr7_GL383534v2_alt     40851 31 +    119183 GTGAGAACAGCCCTGGTCACAGCTCTGCTAC
s panTro4.chr7             143140829 31 + 161824586 GTGAGAACAGCCCTGGTCACAGCTCTGCTAC
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93082230 31 + 110113093 GTGAGAACAGCCCTGATCACAGCTCTGCTAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180980879 31 + 198365852 GTGAGAACAGCCCTGGTCACAGCTCTGCTAC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174726603 31 + 192294377 GTGAGAACAGCCCTGGTCACAGCTCTGCTAC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163392690 31 + 180432695 gtgagaaCAGCCCTGGTCACAGCTCTGCTAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110424055 31 + 127223203 GTGAGAACAGCCCTGGTCACAGCTCTGCTAC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23772150 31 - 128169293 GTGAGAACAGACCTGGTCACAGCTCTGCTCC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40418665 27 + 149736546 --GTGAGCAGCTCTG--CCCAGCATAACTAC
i mm10.chr6                C 0 I 1
s canFam3.chr16             52091651 26 -  59632846 GTGAGAAGAGCTCAGGCC-CAG-TCTGC---
i canFam3.chr16            C 0 C 0
e ponAbe2.chr7             138961467 326 + 157549271 I

a score=1196536.000000
s hg38.chr7_GL383534v2_alt     40882 338 +    119183 CACTCCTACCCTCCGCCCACCTCAAGGGGCT---GTAACACTCAGGGGCAAAGGCCCTGACATACTCCAAAGATCCCCATTTGGAGGTTGCTTAGGTCA--CCTCCTTTGAtgttacagaagatccttaggaaaagttcaaacat-gggcctgaaactccctgacaacaccatggaacacattctttttctcatgggaaacagacagaattaacagactatgactaatgtctattgttcttgagcaaggtacgccggagactgggtgccacttcccagagaatggctgcttcctgtgagaa-gggccagcttggaagccta-aaattccctgc----ttaaagccgct---ct
s panTro4.chr7             143140860 337 + 161824586 CACTCCTACCCTCCGCCCACCTCAAGGG-CT---GTAGCACTCAGGGGCAAAGGCCCTGACATACTCCAAAGATCCCCATTTGGAGGTTGCTTAGGTCA--CCTCCTTTGAtgttacagaagatccttaggaaaagttcaaacat-gggcctgaaactccctgacaacaccatggaacacattctttttctcatgggaaacagacagaattaacagactataactaatgtctattgttcttgagcaaggtacgccggagactgggtgccacttcccagagaatggctgcttcctgtgagaa-gggccagcttggaagccta-aaattccctgc----ttaaagccgct---ct
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138961793 337 + 157549271 CACTCCTACCCCCCACCCACCTCAAGGG-CT---GTAACACTCAGGGGCAAAGGCCCTGACATACTCCAAAGATCCCCATTTGGAGGTTGCTTAGGTCA--CCTCCTTTGAtgttacagaagatccttaggaaaacttcaaacat-gggcctgaaactccctgacagcaccatggaacacattctttttctcatgggaaacagacagaattaacagactatgactaatgtctattgttcttgagcaaggtacgccagagactgggtgccacttcccagagaatggctgtttcctgtgagaa-gggccagcttggaagccta-aaattccctgc----ttaaagccgct---ct
i ponAbe2.chr7             I 326 C 0
s nomLeu3.chr13             93082261 334 + 110113093 CACTCCTACCC-CCGCCCACCTCAAGGG-CT---GTAACACTCAGGGCCAAAGGCCCTGACATACTCCAAAA--CCCGATTTGGAGGTTGCTTAGGTCA--CCTCCTTTGAtgttacagaagatccttaggaaaagttcaaacat-gggcctgaaactccctgacagcaccatggaacacattctttttctcatgggaaacagacagaattaacagactatgactaatgtctattgtttttgagcaaggtacgccggagactgggtgccacttcccagagaatggctgcttcctgtgagaa-gggccagcttggaagccta-aaattccctgc----ttaaagccgct---ct
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180980910 337 + 198365852 CACTCCTACCCCCCACCCACCTCAAGGG-CT---GTAGCACTCAGGGGCAAAGGCCCTGACATACTCCAAAGATCCCCATTTGGAGGCTGCTTAGGTCA--CCTCCTTTGAtgctacagaagatcctcaagaaaagttcaaacat-gggcctgaaactccctgacagcaccatggaacacattctttttctcatgggaaacagacagaattaacagactatgactaatgtctattgttcttgagcaaggtacgccgcagactgggtgccacttcccagagaatggccgcgtcctgtgagaa-gggccagcctggaagccta-acattccctgc----ttaaagccgct---ct
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174726634 337 + 192294377 CACTCCTACCCCCCACCCACCTCAAGGG-CT---GTAGCACTCAGGGGCAAAGGCCCTGACATACTCCAAAGATCCCCATTTGGAGGCTGCTTAGGTCA--CCTCCTTTGAtgctacagaagatcctcaagaaaagttcaaacat-gggcctgaaactccctgacagcaccatggaacacattctttttctcatgggaaacagacagaattaacagactatgactaatgtctattgttcttgagcaaggtacgccgcagactgggtgccacttcccagagaatggccgcgtcctgtgagaa-gggccagcctggaagccta-acattccctgc----ttaaagccgct---ct
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163392721 337 + 180432695 CACTCCTACCCCCCACCCACCTCAAGGG-CT---GTAACACTCAGGGGCAAAGGCCCTGACATACTCCGAAGATCCCCATTTGGAGGCTGCTTAGGTCA--CCTCCTTTGATGCTACAGAAGATCCTTAGGAAAAGTTCAAACAT-GGGCCTGAAACTCCCTGACAGCACCATGgaacacattctttttctcatgGGAAACAGACAGAATTAACAGACTATGACTAATGTCTATTGTTCTTGAGCAAGGTACGCCGCAGACTGGGTGCCACTTCCCAGAGAATGGCCGCTTCCTGTGAGAA-GGGCCAGCTTGGAAGCCTA-AAATTCCCTGC----TTAAAGCCGCT---CT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110424086 338 + 127223203 CACTCCTACCCCCCACCCACCTCAAGGG-CT---GTAACACTCAGGGGCAAAGGCCCTGACATACTCCAAAGATCCCCATTTGGAGGCTGCTTAGGTCA--CCTCCTTTGAtgctacggaagatcctgaggaaaagttcaaacat-gggcctgaaactccctgacagcaccatggaacacattctttttctcatgggaaacagacagaattaacagactatgactaatgtctattgttcttgagcaaggtacgccgcacactgggtgccacttcccagagaatggccgcttcctgtgagaaggggccagcttggaagccta-aaattccctgc----ttaaagccgct---ct
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23772181 335 - 128169293 CACTTCTACCC-CTTCCCCTCGCAAAGG-CC---GTAACACTCATGG-CAAAGGCCCTGACATACTCCAAAGATCCCCATCTGGAGGTTGCTTAGGTCA--CCTCCTTTGAtgctacagaggatccttaggaaaagttcaaacat-gggcctgaaactccctgacagcaacacggaacacattctttttctcatgggaaacagacagaattaacagactatgactaatgtctattattcttgagcaaggtatgccggagactggttgccacttcccagagaatggctgcttcctgtgagaa-gggccagcttggaagccta-aaattccctgc----ctaaagccgct---ct
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40418693 288 + 149736546 ------TATCT-----CTACCAAAAGGG-CT------------------AAAGGCCCAGATGCACTCAGAACACCTGCACCTGGAGGTTACCT---TCAAGTCTCCATTACTGTTAGAGAATAGCTTTATGCAAAGCTCAAACACAAGGTCTGAAATTC---AACGGCACCATGTGATGCACATTT-------------------AGAAGGAACAGGCCATGTCTAGTGTCTA--ATTCTTGAGCAATCTATGCTGCAGATCACATGTAACTTCTCAAAGCACTGTT-TATATTGTGAGAA-GAGATAACTCAGAAAACC--ACACTCCATGC----CAACAGTTGCTTTGCT
i mm10.chr6                I 1 C 0
s canFam3.chr16             52091677 303 -  59632846 CACTCACGTCC----CCCACCACAAGGG-CTTCTAGAACCCTCAGGGACGAAG----TGATCAACTGAAAAGACCTCCAT---------------------CCTATACTGGTGTTAGGCAGG----ttagggaaagctcacatgtggggtctgactctccctga---caccacggaacacaccgccctcttcgtgggaaacgcacagaatggacacgcttggactgatgtctaatgttctcgagcaaggcgtgctcaagagtgtgtgccccttcccagaGCACG----------CTGAGACCGGGGCAGTTGGCAAGACCACAAACCCCCGGCTTTATTAAAGCTGCT---CT
i canFam3.chr16            C 0 I 501

a score=3893942.000000
s hg38.chr7_GL383534v2_alt     41220 1243 +    119183 ttgtttagagaactcacgcttgcctgcttgctttgttgttatggaagaatac---ggagctta-ccccaaatgtctcaaataagggaaaa------caattattattggatgtcatc-agggctcataatttctgcatcaagtataataataaagaaataaaaagcatcagaatctcttctctgcccgctccaccagctcgggtcacagagcctggctgtggctg---gccctgctggccaaccc-cagaccccagaa-------cccagaaggcagcaccgaagccctgggccatttcaacagtggagaatcctgccccccagtggagcgcaggagcactgtgaggactgtttgtcactatatttaatggggatgttataggttgaattttgtcccca--caaaaaagatggggccccagcacctcactcagaatgggac-ttttttggatagcatctttacataggtaatcaagttaaaatgaagttactggagtgggccctggtccagtatgaatgctgtccttatagaaaggggacttttggacacatagacacacaca-tacagcaaacag-caggtgaacgtgacgac-agagactgggatgatgcatctacaagccaaggaaccccaaagattgccagcatccaccagcagctc-agggagagtcctggaacggattctcctgcatagccccagagggaactcacactgctgagaccttgactttggg--cttccagcctctagaacagtgagacagtatgtttctgctgttttaagccactcag-ttttggcactttgttatgcagccccggaaaagccctaattgagggaggaataaaaagcgacaaaaccctcttagcccatctttattttctcagtgtcctacaatttccatcaatcaatgaacaaaaagcaaaatatagcttcactgagcaagggaaacatccctaattatggttggccctggaacaGCAGTGATTAAAAATAGGCACTCCCCGCTGCCACACCGCCTCTGCAAACTGCCACGG---TGGCTTACCCCAAACTATGACACAAACTGTT--GAGTCAAGATTTTCATCAACCAACTA-TAGCCTTCTATTCTCCAACCATCTCTACTCCAGAGTGATTTACAGCTCT--TATGTCAAAGTGATGACAAGAGACC-TTCAGACAAATTTATATTTTAAAAAGG--AAAAAAATCATCACTATATTCATATAATGATTACTAATGTAAGATGGATGATAGCGCCAATTTCAGGGCTCCTATGCATTT
s panTro4.chr7             143141197 1237 + 161824586 ttgtttagagaactcacgcttgcctgcttgctttgttgttatggaagaatac---ggagctta-ccccaaatgtctcaaataagggaaaa------caattattattggatgtcatc-agggctcataatttctgcatcaagtataataataaagaaataaaaagcatcagaatctcttctctgcccgccccaccggctcgggtcacagagcctggctgtgcctg---gtcctgctggccaaccc-caga-------a-------cccagaaggcagcaccgaagccctgggccatttcaacagtggagaatcctgccccccagtggagcacaggagcactgtgaggactgtttgtcactatatttaatgggggtgttataggttgaattttgtcccca--caaaaaagatggggccccagcacctcactcagaatgggaccttttttggatagcatctttacataggtaatcaagttaaaatgaagttactggagtgggccctggtccagtatgaatgctgtccttatagaaaggggacttttggacacatagacacacaca-tacagcaaacag-caggtgaacgtgacgac-agagactgggatgatgcatctacaagccaaggaaccccaaagattgccagcatccaccagcagctc-agggagagtcctggaacggattctcctgcatagccccagagggaactcacactgctgagaccttgactttggg--cttccagcctctagaactgtgagacagtatgtttctgctgttttaagccactcag-ttttggcactttgttatgcagccccggaaaagccctaattgagggaggaataaaaagcgccaaaaccctcctagcccatctttattttctcagtgtcctacaatttccatcaatcaatgaacaaaaagcaaaatatagcttcactgagcaagggaaacatccctaattatggttggccctggaacaGCAGTGATTAAAAATAGGCACTCCCCGCTGCCACACCGCCTCTGCAAACTGCCACGG---TGGCTTACCCCAAACTATGACACAAACTGTT--GAGTCAAGATTTTCATCAACCAACTA-TAGCCCTCTATTCTCCAACCATCTCTACTCCAGAGTGATTTACAGCTCT--TATGTCAAAGTGATGACAAGAGACC-TTCAGACAAATTTATATTTTAAAAAGG--AAAAAAATCATCACTATATTCATATAATGATTACTAATGTAAGATGGATGATAGCTCCAATTTCAGGGCTCCTGTGCATTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138962130 1250 + 157549271 ttgtttagagaactcacgcttgcctgcttgctttgttgttatggaagaatac---ggagctta-cccccaatgtctcaaataagggaaaa------caattattattggatgtcacc-agggctcataatttctgcatcaagtataataataaagaaataaaaagcatcagaatctcttctctacccgccccaccggctcgggtcacagagcctggctgtggctg---gccctgctggccaaccc-cagaccccagaa-------cccagaaggcagcaccgacaccctgggccatttcaacagtggagagtcctgccccctagtggagcgcaggagcactgtgaggactgtttgtcactctatttaatgggggtgttataggttgaattttgtcccca--caaaaaagatggggccccagcacctcactcagaatgggaccttatttggatagcatctttacataggtaatcaagttaaaatgaagttactggagcgggccctggtccagtatgaatgctgtccttatagaaaggggacttttggacacatagacacacacactacagcaaacag-cgggtgaacgtgaagac-agagactgggatgatgcatctacaagccaaggaaccccaaagattgccagcatccaccagcagctc-agggagaggcctggaatggattctcccacatagccccagagggaactcacactgctgagaccttgactttggg--cttccagcttctagaactgtgagacagtatgtttctgctgttttaagccacccagtttttggcactttgttatgcagccccggaaaagccctaattgagggaggaataaaaggtgccaaaaccctcttagcccatctttattttctcagtgtcctacaatttccatcaatcaatgaacaaaaagcaaaatatagcttcactgagcaagggaaacatccttaattacggttggccctggaacaGCAGTGATTAAAAATAGGCACTCCCCGCTGCCACACCGCCTCTGCAAACTGCCACAG---TGGCTTACCCCAAACTATGACACAAACTGTTCAGAGTCAAGATTTTCATCAACCAACTA-TAGCCTTCTATTCTCCAACCATCTCCACTCCAGAGTGATTTACAGCTCTTATATGTCAAAGTGATGACAAGAGACC-TTCAGACAAATTTATCTTTTAAAAAGG--AAAACAATCATCACTATATTCATATAATGATTACTAATGTAAGATGGACGATAGCTCCAATTTCAGGGATTCTATACATTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93082595 1241 + 110113093 ttgtttagagaactcacgcttgcctgcttgctttgttgttacggaagaatacagagaagctta-cccccaatgtctcaaataagggaaaa------caattattattggatgtcacc-agggctcataatttctgcatcaagtgtaataataaagaaataaaaagcatcagaatctcgtctctgcccgccccaccggctcgggtcgcagagcctggctgtggctg---gccctgctggccaaccc-cagaccccagaa-------cccagaaggcagcaccgacgccctgggccatttcaacagtggagaaacctgccccccagtggagcgcaggagc---------actgtttgtcactgtatttaatgggggtgttataggttgaattttgtcccca--caaaaaagatggggccccagcacctcactcagaatgggaccttatttggatagcatctttacataggtaatcaagttaaaatgaagttactggagtgggccctggtccaatatgaatgctgtccttatagaaaggggacttttggacacatagacagacaca-tacagcaaacag-cgggtgaacgggaagac-agagactgggatgatgcatctacaagccaaggaaccccaaagatcgccagcatccaccagcagctc-agggagagtcctggaacggattctccctcatagccccagagggaactcacactgctgagaccttgactttggg--cttccagcctctagaactgtgagacagtatgtttccgctgttttaagccacccagtttttggcactttgttatgcagccccggaaaagccctaattgagggaggaataaaaggcgccaaaatcctcttagcccatctttattctctcagtgtcctacaatttccaccaatcaatgaacaaaaagcaaaatatagcttcactgagcaagggaaacatccctaattatggttggccctggaacaGCAGTGATTAAAAATAGGCACTCCCTGCTGCCACACCGCCTCTGCAAACTGCCACAG---TGGCTTACCCCAAACTATGACACAGACCGTTCAGAATCAAGATTTTCATCAACCAACTA-TAGCCTTCTATTCTCCAACTATCTCCACTCCAGAGTGACTTACAGCTCT--TATGTCAACATGATGACAAGAGACC-TTCAGACAAATTTATATTTTAAAAAGG--AAAAAAATCATCACTATATTCATATAATGATTACTAATGTAAGATGGATGATAGCTCCAATTTCAGGGCTTCTATACGTTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180981247 1242 + 198365852 ttgtttagagacctcacgcttgcctgcttgctttgtggttatggaagaatacggagaagctta-cctccaatgtctcaaataaggggaaa------caattattattggatatcatc-agggctcataatttctgcattaagtataataat----aaataaaaagcatcagaatctcttctctgcccgccccactggctcgggtcgcagagcctggctgtggctg---gccctgctggctgaccc-cagaccccagac-------cccagaaggcagca------ccctgggccatttggacagtggagaatcctgccccccagtggagctcaggagcactgtgaggactgtttgtcactatgtttaatgggggtgttataggttgaattttgtcccca--caaaaaagatggggccccagcacctcgctcagaatgggaacttatttggatagcatctttacataggtaatcgagttaaaatgaagtcactggagccggccctggtccagtatgaatgctgtccttatagaaaggggacttttggacacagagacacacaca-cacagcaaacag-caggtgaacatgaagacaagagactgggatgatgcatctacaagccaaggaaccccaaagattgccagcatccaccagcagcta-ggggagaggcctggaacggattctccctcatagccccaaagggaactcacactgctgagaccttgactttgga--cttccagcctctagaactgtgagacactatgtttctgctgttgtaagccacccagtttttggcactttgttatgcaggcccggaaaagccctaattgagggaggaataaaaggcaccaaaaccctcttagcccatcgttattttctcagtgtcctacaatttccatcaatcaatgaacaaaaagcaaaatacggcttcactgagcaagggaaacatccctaattatggttggccctggaacaGCAGTGATTAAAAATAGGCATTCCCCGCTGCCACACTGCCTCTGCAAACTGCCACAG---TGGCTTACCCCAAACTATGACACAAACTGTTCAGAGCCAAGA-TTTCATCAACCAACTA-CAGTCTTCCATTCTCCAACCATCTCCACTCTAGACTGACTTACAGCTCT--TATGTCAAAGTGATGACAACAGACC-TTCAGACAAATTTATATTTTAAAAAGGAAAAAAAAATCATTACTATATTCATATAATGATTACTAATGTAAGATGGATGATAGCTCCAATTTCAGGGCTCCTATACATTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174726971 1246 + 192294377 ttgtttagagacctcacgcttgcctgcttgctttgtggttatggaagaatacggagaagctta-cctccaatgtctcaaataagggaaaa------caattattattggatatcatc-agggctcataatttctgcattaagtataataataaagaaataaaaagcatcagaatctcttctctgcccgccccactggctcgggtcgcagagcctggctgtggctg---gccctgctggctgaccc-cagaccccagac-------cccagaaggcagca------ccctgggccatttggacagtggagaatcctgccccccagtggagctcaggagcactgtgaggactgtttgtcactatgtttaatgggggtgttacaggttgaattttgtcccca--caaaaaagatggggccccagcacctcgctcagaatgggaacttatttggatagcatctttacataggtaatcgagttaaaatgaagtcactggagccggccctggtccagtatgaatgctgtccttatagaaaggggacttttggacacagagacacacaca-cacagcaaacag-caggtgaacatgaagacaagagactgggatgatgcatctacaagccaaggaaccccaaagattgccagcgtccaccagcagcta-ggggagaggcctggaacggattctccctcatagccccaaagggaactcacactgctgagaccttgactttgga--cttccagcctctagaactgtgagacactatgtttctgctgttgtaagccacccagtttttggcactttgttatgcaggcccggaaaagccctaattgagggaggaataaaaggcaccaaaaccctcttagcccatcgttattttctcagtgtcctacaatttccatcaatcaatgaacaaaaagcaaaatacggcttcactgagcaagggaaacatccctaattatggttggccctggaacaGCAGTGATTAAAAATAGGCATTCCCCGCTGCCACACTGCCTCTGCAAACTGCCACAG---TGGCCTACCCCAAACTATGACACAAACTGTTCAGAGCCAAGA-TTTCATCAACCAACTA-TAGTCTTCCATTCTCCAACCATCTCCACTCTAGACTGACTTACAGCTCT--TATGTCAAAGTGATGACAACAGGCC-TTCAGACAAATTTATATTTTAAAAAGGAAAAAAAAATCATTACTATATTCATATAATGATTACTAATGTAAGATGGATGATAGCTCCAATTTCAGGGCTCCTATACATTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163393058 1236 + 180432695 TTGTTTAGAGAACTCACGCTTGCCTGCTTGCTTTGTGGTTATGGAAGAATACGGAGAAGCTTA-CCTCCAATGTCTCAAATAAGGGAAAA------CAATTATTATTGGATATCACC-AGGGCTCATAATTTCTGCATTAAGtataataacaaagaaataaaaagcatcagaATCTCTTCTCTGCCCGCCCCACTGGCTCGGGTCGCAGAGCCTGGCTGTGGCTG---GCCCTGCTGGCTgaccc-cagaccccagaccccagaacccagaAGGCAGCA------CCCTGGGCCATTTGGACAGTGGAGAATCCTGCCCCCCAGTGGAGCTCA-----------------GTTTGTCACTATGTTTCATGGGGGTGTTATAGGTTGAATTTTGTCCCCA--CAAAAAAGATGGGGCCCCAGCACCTCACTCAGAATGGGAACTTATTTGGATAGCATCTTTACATAGGTAATCGagttaaaatgaagtcactgGAGCCGGCCCTGGTCCAGTATGAATGCTGTCCTTATAGAAAGGGGActtttggacacagagacacacaca-tacagcaaACAG-CAGGTGAACATGAAGACAAGAGACTGGgatgatgcatctacaagccaaggaacccCAAAGATTGCCAGCGTCCACCAGCAGCTA-GGGGAGAGGCCTGGAACGGATTCTCCCTCATAGCCCCAAAGGGAACTCACACTGCTGagaccttgactttgga--cttccagcctctagaactgtgagacactATGTTTCTGCTgttgtaagccacccagtttttgGCACTTTGTTATGCAGGCCCGGAAAAGCCCTAATTGAGGGAGGAATAAAAGGCACCAAAACCCTCTTAGCCCATCGTTATTTTCTCAGTGTCCTACAATTTCCATCAATCAatgaacaaaaagcaaaatacgGCTTCACTGAGCAAGGGAAACATCCCTAATTATGGTTGGCCCTGGAACAGCAGTGATTAAAAATAGGCATTCCCCGCTGCCACACTGCCTCTGCAAACTGCCACAG---TGGCTTACCCCAAACTATGACACAAACTGTTTAGAGCCAAGA-TTTCATCAACCAACTA-TAGCCTTCCATTCTCCAACCATCTCCACTCCAGACTGACTGACAGCTCT--TATGTCAAAGTGATGACAACAGACC-TTCagacaaatttatattttaaaaaggaaaaaaaaatcatcactatATTCATATAATGATTACTAATGTAAGATGGATGATAGCTCCAATTTCAGGGCTCCTATACATTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110424424 1244 + 127223203 ttgtttagagaactcacgcttgcctgcttgctttgtggttatggaagaatacggagaagctta-cctccaatgtctcaaataagggaaaa------caattattattggatatcacc-agggctcataatttctgcattaagtataataataaagaaataaaaagcatcagaatctcttctctgcccgccccactggcttcggtcgcagagcctggctgtggctg---gccctgctggctgaccc-cagaccccagaa-------cccagaaggcagca------ccctgggccatttggacagtggagaatcctgccccccagtggagctcaggagcactgtgaggactgtttgtcactatgtttaatggggctgttataggttgaattttgtcccca--caaaaaagatggggccccagcacctcgctcagaatgggaacttatttggatagcatctttacataggtaatcgagctacaatgaagtcactggagccggccctggtccagtatgaatgctgtccttatagaaaggggacttttggacacagagacacacaca-tacagtgaacag-caggtgaacatgaagacaagagactgggatgatacatctacaagccaaggaaccccaaagattgccagcgtccaccagcagcta-ggggagaggcctggaacggattctccctcatagccccaaagggaactcacactgctgagaccttgactttgga--cttccagcctctagaactgtgagacagtatgtttctgctgttgtaagccacccagtttttggcactttgttatgcaggcccggaaaagccctaattgagggaggaataaaaggcaccaaaaccctcttagcccatcgttattttctcagtgtcctacaatttccatcaatcaatgaacaaaaagcaaaatacggcttcactgagcaagggaaacatccctaattatggttggccctggaacaGCAGTGATTAAAAACAGGCACTCCCCGCTGCCACACTGCCTCTGCAAACTGCCACAG---TGGCTTACCCCAAACTATGACACAAACTGTTCAGAGCCAAGA-TTTCATCAACCAACTA-TAGCCTTCCATTCTCCAACCATCTCCACTCCAGACTGACTGACAGCTCT--TATGTCAAAGTGATGACAACAGACC-TTCAGACAAATTTATATTTTAAAAAGG--AAAAAACTCATCACTATATTCATATAATGATTACTAATGTAAGATGGATGATAGCTCCAATTTCAGGGCCCCTATACATTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23772516 1238 - 128169293 ttgttcagcaaactcacgcttgcctgcttgctttgttgttgtagaagaatatggagcagctta-ctcccagtgtctcaaataagcgaaaa------caattattattggatgtcgcc-agggctcataatttgtgcatcaagtataacaataaagaaataaaaagcatcagagtctcttctctgccagccccaccagcttgggttgcagagcctggctgtggctg---gcctagctagctgatcc-cagaccccagaa-------cccagcaggcagcaccaacatcctgggccatttggatagtggaaaatcctgcccctgagtggaacgcaggagcactgtggggactgtttgtcac--tgtttaatgagggtgttataggttgaattttgtcccca--caaaaaagatggggccccagtacctcactcagaatgggaccgtatttggatagcatctttacataggtaatcaagttcaaatgaagttactggagtggtccctagtccagtatgaatgctgtccttatagaaaggggacatttggacacagagacacacaca-tagagcaaacag-caggtgaacatgaagac-agagactgggatgatgcatctccaagccaaggaaccccaaagattgccagcatccaccagcagctatggggagaggcctggaa------------cacagcttcagagggaactcacactgctgagaccctgactttggg--cttccagactctagaaccgtgagacagtatgtttctgctgttttaaaccacccaatgtttggcactttgttatgcagccccggaaaagccctaattgagggaggaatagaaggcgccaaaacccttttagcccatctttattctctcagtgtgctacaatttccatcaatcaatgaacaaaaagcaaaatatagcttcactgagcaagggaaacatccctaattatggttggccctggaacaGCAGTGATTAAAAATAGGCACTCCCCGCTGCCACGCTGCCTCTGCAAACTGCCACTG---TGGCTTACTCCAAACTATGCCACAAACTGCTCAGAGTCAAGATTTTCACTGACCAACTA-TAGCATGCTATTCTCCACCCATCTCCACTCCAGAGTGAGTCACAGCTCT--TATGACAAAGTGATGACAAGAGACC-TTCAGACAAATTTATATTTTAAAAAGA-AACAAAAATCATCACAATATTCATATAACGATTACTAATATAAGATGGATGATAGCTCCAATTTCAGGGCTCCTATACATTT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40418981 1105 + 149736546 TTATGTAGA------ATGTGAGCATGCATGTTCT---GTTACAATAGAACTGAGAGAATCTGAGCCCTCAATGTCTCA---AAGGGAAGAGGGGGTCAGTTATGACTGAAGGTCACTGAGGGCTCAT-ACTTCCACATCAGCT-----------------AAATGAATCCGAATCTCCCCTCC-CCTATTCCACC----CCTGTCTCAGCCTCT-ACTCAGGCTGAGAGCCTTGTCAACCAACCCTCAGA---------------TCAAGACAATGACACTTAGGTCCTAGACCACTTGGGCGACGCAGAATGATGCCACCGGGTCAA---------------------CGCTT-----TATGTTGCATAGGAACAttagaggttgattttgttccttgtccaaagatgctggactcttggtac----caaagaagatggctgtatttggatgg-atcgtaggaca--caattaggttaaagaaaggtcttttgagggagcctggattctatgtgact----------taaaaaggggaaatt---acacatgcacacacaaa-ggcgtggggtagacacgtgaggatgattgc-agacaatgggatgatgcagat----gcccaggaa-cccagagccagccagca-aagcacggagcca-ggagagacgggggaagcg--------------gccct-------gctgaca---ctgacaccttgacttttgactctttaagtctctggaactatgagacagtaagtttcttttgtctaaa------------taaagatactgctacccagtcccagcaagg---taatataAGGATGAATAAAAAGCTCCGATCCCTTCTGAACCCTGGTGTATTTTCTCAGAGCCTTCCAGTGACCACCACACAATGAAAAAGAA----------ACTTCAGAGA-----AGACACATCCCTGACTGTGG------CTGAAACAACACTGATAAGTAATA-----TCCCCGCT-CCTCCCTCCCAC--CAACATGCCATGAATCCTTCCTTCTCCAAGTTGGAATGCAAGCTGCTCAGAGTCAAGATTTCCACTGAAAAGGTAGTAGTAGCTGGT--TTCAGTCACTGCCAGCCCAGAGTGGCTTCCAGCACC--CACAACAAGACGATGGCAGGAGACTATGCGGACAAGTTTGTATTAAAAGCAGAAACACAACATCATCACTGTACTTAAAAAGATACTATTagttgtgtgtaggtgacagtgcacatctataa---tccaagcactt
i mm10.chr6                C 0 I 169
e canFam3.chr16             52091980  501 -  59632846 I

a score=127443.000000
s hg38.chr7_GL383534v2_alt     42463 76 +    119183 TAAGTTTTGACAAGGAGGTAGT--CCTACTATAACAAATATAGTCCTCCTATAACAAATAACTAGTTGGGAGGAGGTT
s panTro4.chr7             143142434 76 + 161824586 TAAGTTTTGACAAGGACGTAGT--CCTACTGTAACAAATATAGTCCTCCTATAACAAATAACTAGTTGGGAGGAGGTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138963380 76 + 157549271 TAAGTTTTGACAAGGTGGTAGT--CCTACTATAACAAATATAGTTCTCCTATAACAAATAACTGGTTGGAAGATGGCT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93083836 63 + 110113093 TAAGTTTTGACAAGGAGGTAGT--CCTACTGTAACAAATATAGTCCTCCTA-------------GTTGGGAGGAGGTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180982489 56 + 198365852 TAAGTTTTGACAAGGAGGCAGT--CCTCCTGTAACAAATA--------------------ACTAGTTGGGAGGAGGGT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174728217 56 + 192294377 TAAGTTTTGACAAGGAGGCAGT--CCTCCTGTAACAAATA--------------------ACTAGTTGGGAGGAGGGT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163394294 56 + 180432695 TAAGTTTTGACAAGGAGGCAGT--CCTCCTGTAACAAATA--------------------ACTAGTTGGGAGGAGGGT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110425668 56 + 127223203 TAAGTTTTGACAAGGAGGCAGT--CCTCCTGTAACAAATA--------------------ACTCGTTGGGAGGAGGGC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23773754 58 - 128169293 TAAGCTTTGACAGAGAGGTAGTGATGTGATAGAATAACAA--------------------ATTAGTTGGAAGCAGGGT
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40420086 169 + 149736546 I
e canFam3.chr16             52091980 501 -  59632846 I

a score=676124.000000
s hg38.chr7_GL383534v2_alt     42539 215 +    119183 GCTTGTAGTCACTTAGTTCA----------CTTTTACAAATGTTCATGAGCTAGACAGGAAACCC--ATGG-T--CTAAGCTGTGTCTGACTATTCTGAGAAGATGGCAGATTTCAGATACTTTTTAGGGAAGTTTGTCAAACTGACGAAAGTCTGATTCACAG-AAAATCATACAAAGGCAATTATGTTCAAAGGTGTTTTTATTAGGATGGAATTTCCCTAAAAAGAAC
s panTro4.chr7             143142510 215 + 161824586 GCTTGTAGTCACTTAGCTCA----------CTTTTACAAATGTTCATGAGCTAGACAGGAAACCC--ATGG-T--CTAAGCTGTGTCTGACTATTCTGAGAAGATGGCAGATTTCAGATACTTTTTAGGGAAGTTTGTCAAACTGACGAAAGTCTGATTCACAG-AAAATCATACAAAGGTAATTATGTTCAAAGGTGTTTTTATTAGGATGGAATTTCCCTAAAAAGAAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138963456 214 + 157549271 GCTTATAATCACTTAGCTCA----------CTTTTACAAATGTTCATAAGCCAGACAGGAAACCC--ATGG-T--CTAAGCTGTGTCTGACTATTCTGAGAAGATGGCAGATTTCAGATACTTTTTAGGGAAGTTTGTCAAAA-GATGAAAGTCTGATTCACAG-AAAATCATACAAAGGCAACTGTGTTCAAAGGTGTTTTTATTAGGATGGAATTTCCCTAAAAAGAAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93083899 215 + 110113093 GCTTATAATCACTTAGCTCA----------CTTTTACAAATGTTCATGAGCTAGACAGGAAACCC--ATGG-T--CTAAGCTGTGTCTGACTATTCTGAGAAGATGGCAGATTTCAGATACTTTTTAGGGGAGTTTGTCAAACTGATGAAAGCCTGATTCACAG-AAAATCATACAAAGTCAACTATGTTCAAAGTTGTTTTTATTAGTATGGAATTTCCCTAAAAAGAAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180982545 215 + 198365852 GCTTATAATCATTTAGTTCA----------CTTTTACAAATGTTCATGAGCTAGACAGGAAACCC--ATGG-T--CTAAGCTGTGTCTGACTATTCTGAGAAGATGGCA-ATTTCAGATACTTTTTAGGGAAGCTGGTCAAACTGATCAAAGTTTGATTCACAGAAAAATCACACAAAGGCAATTATGTTCAAAGGTGTTTTTATTAGGATGGAATTTCCCTAAAAAGAAC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174728273 215 + 192294377 GCTTATAATCATTTAGTTCA----------CTTTTACAAATGGTCATGAGCTAGACAGGAAACCC--ATGG-T--CTAAGCTGTGTCTGACTATTCTGAGAAGATGGCA-ATTTCAGATACTTTTTAGGGAAGCTGGTCAAACTGATCAAAGTTTGATTCACAGAAAAATCACACAAAAGTAATTATGTTCAAAGGTGTTTTTATTAGGATGGAATTTCCCTAAAAAGAAC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163394350 216 + 180432695 GCTTATAATCATTTAGTTCA----------CTTTTACAAATGTTCATGAGCTAGACAGGAAACCC--ATGGTT--CTAAGCTGTGTCTGACTATTCTGAGAAGATGGCA-ATTTCAGACACTTTTTAGGGAAGTTGGTCAAACTGATCAAAGTTTGATTCACAGAAAAATCACACAAAGGCAATTATGTTCAAAGGTGTTTTTATTAGGATGGAATTTCCCTAAAAAGAAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110425724 215 + 127223203 GCTTATAATCATTTAGTTCA----------CTTTTACAAATGTTCATGAGCTAGACAGGAAACCC--ACGG-T--CTAAGCTGTGTCTGACTATTCTGAGAAGATGGCA-ATTTCAGACACTTTTTAGGGAAGTTGGTCAAACCGATCAAAGTTTGATTCACAGAAAAACCACACAAAGGCAATTATGTTCAAAGGTGTTTTTATTAGGATGGAATTTCCCTAAAAAGAAC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23773812 217 - 128169293 GCTTATAATCATTTAGCTCA----------CATTTACAAATGATCATGAGCTAGATAAGAAACCC--ATGG-TGGCTAAGCTGTGTCTGACTATTTGGAGAAGATGGCAGATTTCAGATACTTTTTAGGGATGTTTGTCAAACTGATGAAAGTTTGATTCACAG-AAAATCACACAAAGGCAATTATGTTCAAAGATGTTTTCATTAGGATGGAATTTCCCTAAAAAGAAC
i calJac3.chr8             C 0 I 25
s mm10.chr6                 40420255 192 + 149736546 GCCTTCAGGTGCTTAGAGCAACTGCCGGTGCTCTCAGAAATGCTGCTGGGCTGGACAAGAAAGCCTGATGG-C--TTACAGTCTGGCTGGCTGTTCTGAGAAGGCAGTGGGTTGCAGGTACTCTTCAGGGAAATGTGTCAAGC----------TTGATGCATAG------------------GTGAAGTTCAAAGG--------TTAGGATCCATTTTCCCTTAAAAGCCC
i mm10.chr6                I 169 C 0
e canFam3.chr16             52091980 501 -  59632846 I

a score=43511.000000
s hg38.chr7_GL383534v2_alt     42754 24 +    119183 ACTGAGAATCATTTTATCATATTT
s panTro4.chr7             143142725 24 + 161824586 CCTGAGAATCATTTTATTATATTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138963670 24 + 157549271 ACTGAGAATCATTTTATTATATTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93084114 19 + 110113093 ACTGAGAATCATTT-----TATTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180982760 23 + 198365852 ACTGAGaat-attttattatattt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174728488 23 + 192294377 ACTGAGAAT-ATTTTATTATATTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163394566 23 + 180432695 actgagaat-attttattatattt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110425939 23 + 127223203 ACTGAGAAT-ATTTTATTATATTT
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40420447  9 + 149736546 ACTGAGAAT---------------
i mm10.chr6                C 0 C 0
e canFam3.chr16             52091980 501 -  59632846 I
e calJac3.chr8              23774029 25 - 128169293 I

a score=166512.000000
s hg38.chr7_GL383534v2_alt     42778 60 +    119183 TAATACTACATTTTCTGTGTTATAGGGGGCTGTGTCAAGGGTAATTTATATTTTTTCATT
s panTro4.chr7             143142749 60 + 161824586 TAATACTACATTTTCTGTGTTATAGGGGGCTGTGTCAAGGGTAATTTATATTTTTTCATT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138963694 60 + 157549271 TAATACTACATTTTCTGTGTTATAGGGGGCTGTGTCAAGGGTAATTTATATTTTTTCATT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93084133 60 + 110113093 TAATACTGTATTTTCTGTGTTATAGGGGGCTGTGTCAAGGGTAATTTATATTTTTTCATT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180982783 60 + 198365852 taatactatattttCTGTGTTAAAGGGGGCTGTGTCAGGGGTAATTTATATTTTTTCATT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174728511 60 + 192294377 TAATACTATATTTTCTGTGTTAAAGGGGGCTGTGTCAGGGGTAATTTATATTTTTTCATT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163394589 60 + 180432695 taatactatattttCTGTGTTAAAGGGGGCTGTGTCAggggtaatttatattttttcatt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110425962 60 + 127223203 TAATACTATATTTTCTCTGTTAAAGGGGGCTGTGTCAGGGGTAATTTATATTTTTTCATT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23774054 56 - 128169293 TAATACTCTATCTTCTATGTTAAAGGGGGCTCTGTCAAGGGTA----ACATTTTTTCATT
i calJac3.chr8             I 25 T 81
s mm10.chr6                 40420456 13 + 149736546 ---TTCTACATTGTCT--------------------------------------------
i mm10.chr6                C 0 C 0
e canFam3.chr16             52091980 501 -  59632846 I

a score=79283.000000
s hg38.chr7_GL383534v2_alt     42838 40 +    119183 CAAAGTTGTTTCATTAGTATCAAATTTCCCTAAAAAGAAT
s panTro4.chr7             143142809 40 + 161824586 CAAAGGTGTTTCATTAGTATCAAATTTCCCTAAAAAGAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138963754 40 + 157549271 CAAAGGTGTTTCATTAGGATCAAATTCCCCTAAAAAGAAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93084193 40 + 110113093 CAAAGGTGTTTCATTAGGATCAAATTTCCCCAAAAAGAAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180982843 37 + 198365852 CAAAGGTGTTTCATTAGGATCAAATTTCCCTAAA---AAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174728571 37 + 192294377 CAAAGGTGTTTCATTAGGATCAAATTTCCCTAAA---AAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163394649 37 + 180432695 caaagGTGTTTCATTAGGATCAAATTTCCCTAAA---AAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110426022 37 + 127223203 CAAAGGTGTTTCATTAGGATCAAATTTCCCTAAA---AAT
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40420469  8 + 149736546 -----------------------------TTAAA---AAG
i mm10.chr6                C 0 C 0
e canFam3.chr16             52091980 501 -  59632846 I
e calJac3.chr8              23774110 81 - 128169293 T

a score=155455.000000
s hg38.chr7_GL383534v2_alt     42878 68 +    119183 ACTGAGAATCATTTTATTATA-TTTTTAATACTA---CATTTTCTGTGTTAAAGGGGGCTGTGTCAAGGGA-A
s panTro4.chr7             143142849 68 + 161824586 ACTGAGAATCattttattata-tttttaatacta---tattttCTGTGTTAAAGGGAGCTGTGTCAAGGGA-A
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138963794 68 + 157549271 ACTGAGAATCattttattata-tttttaatacta---tattttCTGTGTTAAAGGGGGCTGTGTCAAGGGT-A
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93084233 68 + 110113093 ACTGAGAATCATTTTATTATA-TTTTTAATACTA---TATTTTCTGTGTTAAAGGGGGCTGTGTCAAGGGT-A
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180982880 70 + 198365852 ACTGAGAATCATTTCATTATA-TTTTTAATACTACTATATTTTCTGTGTTAAAGGGGGCTGTGTCAAGGTA--
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174728608 70 + 192294377 ACTGAGAATCATTTCATTATA-TTTTTAATACTACTATATTTTCTGTGTTAAAGGGGGCTGTGTCAAGGTA--
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163394686 70 + 180432695 ACTGAGaatcatttcattata-tttttaatactacTGTATTTTCTGTGTTAAAGGGGGCTGTGTCAAggta--
i papAnu2.chr3             C 0 I 298
s chlSab2.chr21            110426059 72 + 127223203 ACTGAGAATCATTTCATTATGTTTTTTGCTACTACTATATTTTCTGTGTTAAAGGGGGCTGTGTCAAGGTAA-
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23774029 68 - 128169293 ATTGAGAATCATTTTATTATA-TTTATAATACTC---TATCTTCTATGTTAAAGGGGGCTCTGTCAAGGGT-A
i calJac3.chr8             T 81 C 0
s mm10.chr6                 40420477 11 + 149736546 -----GTAACATTTAA---------------------------------------------------------
i mm10.chr6                C 0 C 0
e canFam3.chr16             52091980 501 -  59632846 I

a score=1942062.000000
s hg38.chr7_GL383534v2_alt     42946 633 +    119183 ATATTTTTTCATTTTCTAGGTTTATTGTTTGCTGATTTGCTGCTCAGTTGT----CTTTTCTGTTTGACTACATTAAACTCTA-TACTTGAACCACGATTCTAAAGAAAAGTTCAGTACAAAAGTTAGAGTCCTTTAGACAAAGAACTA-------------------------------------------------------------------------------ATATG--------------------------AGGATTCTGTCCTTTGATTGCCTCAGATATTACTGACTGATGGGACAGAACAAGGCAAT-------AAT------------ATGGAATCTGAACAT--AGACAAAAATACAAATTGGCAGTTCCTGGATGAATGTTAAGCAACTGCTGTATGAAAGACTCAAAATTTAAACACACTACAGATTTTGCAACAAACAAGATTGTCAAACTACAATATCAAGAAAAACCAAAAAGTACTGACACAAGGCTCAGAGTGCTGGATGATAAGTTAGTCTTCAAAGATGATGTCAAAGCAGCCCTTCCTGGTGAACTTACCTACAAGAATGCAGAAATTGAGAAACCACCACACCGAAATGCATGCCAAACCACCTATGGAAACTGTCCAAGAGCCGTGACACTGTAAAAACTAGAGAATAACCGGCTCAATATATATTATTAATCAGAAGCC-----------------ATAGG--------CTGCTGGGCCAGAGACACTGGGATTCTCCTTAAGCCCACAG-CTCCTTCACTGAT
s panTro4.chr7             143142917 626 + 161824586 ATATTTTTTCATTTTCTAGGTTTATTGTTTGCTGATTTGCTGCTCAGTTGT----CTTTTCTGTTTGACTACATTAAACTGTA-TACTTGAACCACGATTCTAAAGAAAAGTTCAGTACAAAAGTTAGAGTCCTTTAGACAAAGAACTA-------------------------------------------------------------------------------ATATG--------------------------AGGATTCTGTCCTTTGATTGCCTCAGATATTACTGACTGATGGGACAGAACAAGGCAAT-------AAT------------ATGGAATCTGAACAT--AGAGAAAAATACAAATTGGCAGTTCCTGGATGAATGTTAAGCAACTGCTGTATGAAAGACTCAAAATCTAAACACACTACAGATTTTGCAACAAACAAGATTGTCAAACCACAATATCAAGAAAA-CCAAAAAGTACTGACACAAGGCTCAGAGTGCTGGATGATAAGTTAGTCTTCAAAGATGATGTCAAAGCAGCCCTTCCTGGTGAACTTACCTACAAGAATGCAGAAA------AACCACCACACCGAAATGCACGCCAAACCACCTATGGAAACTGTCCAAGAGCCGTGACACTGTAAAAACTAGAGAATAACCGGCTCAATATATATTATTAATCTGAAGCC-----------------ATAGG--------CTGCTGGGCCAGAGACCCTGGGATTCTCCTTAAGCCCACAG-CTCCTTCACTGAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138963862 630 + 157549271 ATATTTTTTCATTTTCTAGGTTTATTGTTTGCTGATTTGCTGCTCAATTGT----CTTTTCTGTTTGACTACATTAAACTGTA-TACTTGAACCACGATTCTAAAGAAAAGTTCAGTACAAAAGTTAGAGTCCTTTAGACAAAGAACTA-------------------------------------------------------------------------------ATATG--------------------------AGGATTCTGTCCTTTGATTGCCTCAGATATTACTGACTGATGGGACAGAACAAGGCAAT-------GAT------------ATGGAATCTGAACAT--AGACACAAATATAAATTGGCAGTTCCTGGATGAATGTTAAGCAACTGTTGTATGAAAGACTCAAAATTTAAACACACTACAGATTTTGCAACAAACAAGACTGTCAAACCACAATATCAAGAAAAACCAAAAAGTACTGACACAAGGCTCAGAGTGCTGGATGATAAGTTAGTCTTCAAAGATGATGTCAAAGCAGCCCTTCCTGGTGAACTTACCTACAAGAATGCAGAAATTGAGAAACCACCACACCGAAATGCATGCCAAACCACCTATGGAAAGTGTCCAAGAGCTGTGACACTGTAAAAACTAGAGAATAACCGGCTCAATATATATTATTAATCTGAAGCC-----------------ACAGG--------CTGCTGGGCCAGAGACACTGGGATTCTC---AAGCCCACAG-CTCTTTCACTGAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93084301 632 + 110113093 ATATTTTTTCATTTTCTAGGTTTATTGTTTGCTGATTTGCTGCTCAATTGT----CTTTTCTGTTTGACTACATTAAACTATA-TACTTGAACCACGATTCTAAAGTAAAGTTCAGTACAAAAGTTAGAGTCCTTTAGACAAAGAACTA-------------------------------------------------------------------------------ATATG--------------------------AGGATTCTGTCCTTTGATTGCCTCAGGTATTACTGACTGATGGGACAGAACAAGGCAAT-------AAT------------ATGGAATCTGAACAT--AGACACAAATATAAATCGGCAGTTCCTGGATGAAT-CTAAGCAACTGTTGTATGAAAGACTCAAAATTTAAACACACTATAGATTTTGCAACAAACAAGATTGTCAAACCACAATATCACGAAAAACCGAAAAGTACTGACACAAGGCTCAGAGTGCTGGATGATAAGTTAGTCTTCAAAGATGATGTCAAAGGAGCCCTTCCTGGTGAACTCACCTACAAGAATGCAGAAGTTGAGAAACCACCACACCGAAATGTATGCCAAACCACCTATGGAAACTGTCCAAGAGCCGTGACACTGCAAAAACTACAGAATAACCGGCTCAATATATATTATCAATCTGAAGCC-----------------ATAGG--------CTGCTGGGCCAGAGACACTGGGATTCTCCTTAAGCCCACAG-CTCCTTCACTGAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180982950 630 + 198365852 ATATTTTTTCATTTTCTATGTTTATTGTTTGCTGATTTGCTGCTCAATTGC----CTTTTCTGTTTGACTACATTAAACTGTA-TACTTGAATCATGATTCTAAAGAAAAGTTCGGTACAAAAGTTAGAGTCATTTAGACAAAGAACTA-------------------------------------------------------------------------------ATATG--------------------------AGGATTCTGTCCTTTGACTGCCTCAGATATTCCTGACTGATGGGACAGAACAAGGCAAT-------AAT------------ATGGAATCTGAACAT--AGACAAAAACAAAAATTGGCAGTTCCTGGATGAATGTTAAGCAACTGTTGTATGAAAGCCTCAAAATTTAAACACACTACAGATTTTGCAACAAACAAGATTGTCAAACCACAATATCAAGAAAGACCGAAAAGTACTGAAACAAGGCTCAGAGTGCTG---GATCAGTTAGTCTTCAAAGATGATGTCAAAGGAGCCCTTCCTGGTGAACTTACCTACAAGAATGCAGAAATTGAGAAACCACCACACTGAAATGTATGCCAAACCACCTATGGAAACCATCCAAGAGCCGCGACACTGTAAAAACTAGAGAACAACTGGCTCAACATATATTATTAATCTGAAGCC-----------------ATAGG--------CTGCTGGGCCAGAGACACTGGGATTCTCCTTAAGCCCACAG-CTCCTTCACTGAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174728678 630 + 192294377 ATATTTTTTCATTTTCTATGTTTATTGTTTGCTGATTTGCTGCTCAATTGC----CTTTTCTGTTTGACTACATTAAACTGTA-TACTTGAATCATGATTCTAAAGAAAAGTTCGGTACAAAAGTTAGAGTCCTTTAGACAAAGAACTA-------------------------------------------------------------------------------ATATG--------------------------AGGATTCTGTCCTTTGACTGCCTCAGATATTCCTGACTGATGGGACAGAACAAGGCAAT-------AAT------------ATGGAATCTGAACAT--AGACAAAAACAAAAATTGGCAGTTCCTGGATGAATGTTAAGCAACTGTTGTATGAAAGCCTCAAAATTTAAACACACTACAGATTTTGCAACAAACAAGATTGTCAAACCACAATATCAAGAAAGACCGAAAAGTACTGAAACAAGGCTCAGAGTGCTG---GATCAGTTAGTCTTCAAAGATGATGTCAAAGGAGCCCTTCCTGGTGAACTTACCTACAAGAATGCAGAAATTGAGAAACCACCACACTGAAATCTATGCCAAACCACCTATGGAAACCATCCAAGAGCCGCGACACTGTAAAAACTAGAGAACAACTGGCTCAACATATATTATTAATCTGAAGCC-----------------ATAGG--------CTGCTGGGCCAGAGACACTGGGATTCTCCTTAAGCCCACAG-CTCCTTCACTGAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163395054 630 + 180432695 atattttttcattttctatgtttattgtTTGCTGATTTGCTGCTCAATTGC----CTTTTCTGTTTGACTACATTAAACTGTA-TACTTGAATCACGATTCTAAAGAAAAGTTCGGTACAAAAGTTAGAGTCCTTTAGACAAAGAACTA-------------------------------------------------------------------------------ATATG--------------------------AAGATTCTGTCCTTTGACTGCCTCAGATATTACTGACTGATGGGACAGAGCAAGGCAAT-------AAT------------ATGGAATCTGAAcat--agacaaaaacaaaaattggcagtTCCTGGATGAATGTTAAGCAACTGTTGTATGAAAGCCTCAAAATTTAAACACACTACAGATTTTGCAACAAACAAGATTGTCAAACCACAATATTAAGACAGACCGAAAAATACTGAAACAAGGCTCAGAATGCTG---GATAATTTAGTCTTCAAAGATGATGTCAAAGGAGCCCTTCCTGGTGAACTTACCTACAAGAATGCAGAAATTGAGAAACCACCACACTGAAATGTATGCCAAACCACCTATGGAAACCATCCAAGAGCCGTGACACTGTAAAAACTAGAGAACAACTGGctcaatatatattattaatctGAAGCC-----------------ATAGG--------CTGCTGGGCCAGAGACACTGGGATTCTCCTTAAGCCCACAG-CTCCTTCACTGAT
i papAnu2.chr3             I 298 C 0
s chlSab2.chr21            110426131 627 + 127223203 -TATTTTTTCATTTTCTATGTTTATTGTTTGCTGATTTGCTGCTCAATTGC----CTTTTCTGTTTGACTACATTAAACTGTA-TACTTGAATCATGATTCTAAAGAAAAGTTCGGTACAAAAGTTAGAATCCTTTAGACAAAGAACTA-------------------------------------------------------------------------------ATATG--------------------------AGGATTCTGTCCTTTGACTGCCTCAGATATTACTGACTGATGGGACAGAACAAGGCAAT-------AAT------------ATGGAATTTGAAC----AGACAAAAACGAAAATTGGCAGTTCCTGGATGAATGTCAAGCAACTGTTGTATGAAAGCCTCGAAACTTAAACACACTACAGATTCTGCAACAAACAAGACTGTCAAACCACAATATCAAGAAAGACCGAAAAGTACTGAAACAAGGCTCAGAGTGCTG---GATAAGTTAGTCTTCAAAGATGATGTCAAAGGAGCCCTTCCTGGTGAACTTACCTATAAGAATGCAGAAATTGAGAAACCACCACACTGAAATGTATGCCAAACCACCCATGGAACCCATCCAAGAGCCGTGACACTGTAAAAACTAGAGAACAACTGGCTCAATATATATTATTAATCTGAAGCC-----------------ATAGG--------CTGCTGGGCCAGAGACACTGGGATTCTCCTTAAGCCCACAG-CTCCTTCACTGAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23774097 630 - 128169293 ACATTTTTTCATTTTCT--GGTTATTGTTTGCTGAGTTGC--------TGT----CTTTTGTGTTTGACTATTTTAAACTGCATTACTTGAA-CAAGATTCTAAAAAAAAGTTCAGTACTAAAGTTGGAGTCCTTTAGACAAAGAGCTA-------------------------------------------------------------------------------ATAGG--------------------------AGAATTCTGCCCTTTGATTGCCTCAGGTATCACTGACTGATGGGACAGAACAAGGCAATAATATGGAAT------------ATGGAATCCGAACAC--AGAAACAAATGTAAGTTGGCAGTTCTTGGATGAATGTTAAGTGACTGTTGTATGAAAGCCTCAACATTTAAAAACACTACAGATATTGCAACAAACAAGATTGTCAAACCACAATATCAAGAAAAACCGAGAAGTATTGAAGCAAGGCTCAGAGTGCGGGATGATAAGTTAGTCTTCAAAGATGGTGTCAAAGGAGCCCTTCCTGGTGAACTTACCTGCAAGGATGCAGAGATGAAGAAACCAACACACTGAAATGTATGCCAAACCACCTATGGAAACTGTCCGAGAGCCATGACGCTGTAAAAACTAGAGAATAATTGGCTCAATATCTACTACTGATCTGAAGCT-----------------CCAGG--------CTGCTGGGCCAGAGACACTGGGGTTCCCCTTATGCACACAG-CTCCTTCACTGAT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40420488 676 + 149736546 -----------------------ATAACTCACT---CCGCTACTCAGTTGTGGGCCTTTACTTTTTGACTACACTCAACACCA-TATCTGGACCAAGATTCTACAGAAAACGTCAGAACTA-----TGAGTCTTTTAGACAAAAAGCTAGAGACAGAGCCggctcttccactaagcccgacaacctgagtttgatccctgatcccacTCCCACACACAGAGGAGATAGATGTGTGATGTAAAGAGAAAACAACTAATTCAGAACTCTGTCCTTTGA-----------GCCACTGCTTGGTAGGACAGGATAA--CAAT-------AACAGACAGTGCAGAAGAGAACATGAACTCGGAGGCATAAATAGAAACTCACAGCTCAGCCATGACTGTTACCCAACTGT----TGAGGGAGCCTGGGTTTAAACACATGGTAGATTTTGTAACAGA--------TGAAGCCACACCACCAAGAAAAAACAAAGGGTCTGAGGGCAA----CAGAGTACTAGAAGACAAGATGTTTTTCAGAGATGG---------------ATATGATGAGGTTATCAGTAAGGGCAGGTAAACTCAAACTTCA------------------CAAGCCAGTCATGTCAACTGAGCAATAGTCCAG-------------TGGGGAATAAATGACTCAGTGAATGCTGCAGATGTGAAGCCTCCGCTGTGTGAACCAGATCGGAGAGTCCCCTGTAGAGCCAGCCACTCTGGGGTTCTCTTGAAGCCCACAGTCCCCTGCGCTGAT
i mm10.chr6                C 0 I 991
e canFam3.chr16             52091980 501 -  59632846 I

a score=1246391.000000
s hg38.chr7_GL383534v2_alt     43579 470 +    119183 AAAACACAGCCATATGTGGCCATGCAGATGCCCAGTGCAACTGACCCTGCCTGTCCCTACCACACTGGCAATAATTCATCCACGATCAGAATCAGAGATGCCTTTGTGCGACAATTACACTTCATCACTCTGGTGTGTTAATTATTGGTCTGAACAggccgggcgtggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcggatcgcttggggccagaagttcgagaccagcctggccaacatggtgaaa-cctgtctctaataaatatcccagctactcgggaggctgaggcacgagaattgcttgaacccaggaggcggaggttgcagtgaaccgagagagatcacgccattgca-tccagcctgggtgacagagcgagactcttgtctc-aaaaaaaaaaaatatatatatatatatatatatacacatatata--------tgtgtgtgtgtgtgtgtatttac
s panTro4.chr7             143143543 458 + 161824586 AAAACACAGCCATATGTGGCCATGCAGATGCCCAGTGCAACTGACCCTGCCTGTCCCTACCACACTGGCAATAATTCATCCACGATCAGAATCAGAGATGCCTTTGTGCGACAATTACACTTCATCACTCTGGTGTGTTAATTATTGGTCTGAACAggccgggcgtggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcggatcgcttggggccagaagttcgagaccagcctggccaacatggtgaaa-cctgtctctactaaatatcccagctactcgggaggctgaggcacgagaattgcttgaacccaggaggcggaggttgcagtgaaccgagagagatcacgccattgca-tccagcctgggtgacagagcaagact---gtctc-aaaaaaaaaaaaaaaaaaaaaa-----atatata----tatata--------tatgtgtgtgtgtgtgtatttac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138964492 443 + 157549271 AAAACACAGCCACATGTGGCCATGCAGATGCCCAGTGCAACTGACCCTGCCTGTCCCTACCACACTGGCAATAATTCATCCACGATCAGAATCAGAGATGTCTTCATGCAACAATTACACTTCACCACTCTGCTGTGTTAATTATTGGTCTGAACAggccgggcatggtggctcacgcctgtaatcccagcactttgggagactgaggtgggcggattgcttggggccagaagttcgagaccagcctggccaacacggtgaaa-cctgtctctactaaatatcccagctattcgggaggctgaggcacgagaattgcttgaacccaggaggcagaggttgcagtgaaccgagagagatcacgccattgca-tccagcctgggtgacagagcgagact---gtctc-aaaaaat--------------------atatata----tatacg--------tgtgtgtgtgtctgtgtatttac
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93084933 467 + 110113093 AAAACACAGCCATATGTGGCCATGCAGATGCCCAGGACAACTGACCCTGCCTGTCCCTACCACACTGGCAATAATTCATCCACAATCAGAATCAGAGATGCCTTTGTGCAACAATTACACTTCATCACTCTGGTGTGTTAATTATTGGTCTGAACAggccaggcgtggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcgtattgcttggggccagaagttcgagaccagcctggccaacatggtgaaa-cctgtctctactaaatatcccagctactcgggaggctgaggcacgagaattgcttgaacccaggaggaggaggttgcagtgaaccgagagagatcacgccattgca-tccagcctgggtgacagagcgagactct-gtctc-aaaaaaaaaatatatatatatatat--atatatatgtgtgtgtg--------tgtgtgtgtgtgtgtgtatttac
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180983580 439 + 198365852 AAAACACAGCCATATGTGGCCATGCAGATGCCCAATGCAACTGACCCTGCCTGTCCCTACCACACCAGCAATAAATCATCCACAATCAGAATCAGAGATGCC-TCGTGCAACAATTACACTTCATCACTCTGGTGTGTTAATTATTGGTCTGAACAggccgggcgtggtggctcatgcctataatcccagcactttgggagggtgaggtgggaaaa------aaagccggaagttccagaccagcctggccaacatggtgaaa-cctgtctctactaaaaatcccagctactaggga-gttgaggcacaagaattgcttgaacccaggaggtgaaggttgcagtgaacc----aagatcacaccattgca-tccagcctgggtgccagagcaagact---gtctccaaaaaaaaaaaa---------at----atatata----tatata--------tgtgtgtgtgtgtgtgtatttac
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174729308 462 + 192294377 AAAACACAGCCATATGTGGCCATGCAGATGCCCAATGCAACTGACCCTGCCTGTCCCTACCACACCAGCAATAAATCATCCACAATCAGAATCAGAGATGCC-TCGTGCAACAATTACACTTCATCACTCTGGTGTGTTAATTATTGGTCTGAACAggccgggcgtggtggctcatgcctataatcccagcactttgggagggtgaggtgggcagatcgcttggggccggaagttccagaccagcctggccaacatggtgaaa-cctgtctctactaaaaatcccagctactaggga-gttgaggcacaagaattgcttgaacccaggaggtgaaggttgcagtgaacc----aagatcacaccattgca-tccagcctgggtgacagagcaagact---gtctccaaaaaaaaaaaaaaaaaaaatat----atatata----tatatatgtgtgtgtgtgtgtgtgtgtgtgtatttac
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163395684 435 + 180432695 AAAACACAGCCATATGTGGCCATGCAGATGCCCAATGCAACTGACCCTGCCTGTCCCTACCACACGGGCAATAATTCATCCACAATCAGAATCAGAGATGCC-TCGTGCAACAATTACACTTCATCACTCTGGTGTGTTAATTATTGGTCtgaacaggccgggcgtggtggctcatgcctataatcccagcactttgggagggtgaggtgggcggatcacttggggccggaagttccagaccagcctggccaacatggtgaaa-cctgtctctactaaaaatcccagctactaggga-gttgaggcacaagaattgcttgaacccaggaggtgaagattgcagtgaacc----aagatcacaccattgca-tccagcctgggtgacagagcaagact---gtctc----------aaa---------at----atatata----tatata--------tatatgtgtgtgtgtgtatttac
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110426758 444 + 127223203 AAAACACAGCCATATGTGGCCATGCAGATGCCCAATGCAACTGACCCTGCCTGTCCCTACCACACGGGCAATAATTCATCCACAATCAGAATCAGAGATGCC-TCGTGCAACAATTACACTTCATCACTCTGGTGTGTTAAGTATTGGTCTGAACAggccgggcgtggtggctcatgcctataatcccagcactttgggagggtgaggtgggcggatcgcttggggccggaagttccggaccagcctggccaacatggtgaaa-cccgtctctactaaaaatcccagctactaggga-gttgaggcacaagaattgcttgaacccaggaggtgaaggttgcagtgaacc----aagatcacaccattgca-tccagcctgggtgacagagcaagact---gtctc-aaaaaaaaaaaa---------aa----atatata----tatata--------tgtgtgtgtgtgtgtgtatttac
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23774727 431 - 128169293 AAAACACAGCCATATATGGCCATGCAGAT------TGCAACTGACCCTGCCTGTCCCTACCACACTACCAATAATTCATCCATGGTCAGAATCAGAGGTGCCTCTGTGCAACAATTATACTTCATCACTCTGGTGTGTTAATTATTGGTCTGAACAggctgggcatggtgactcatgcctgtaatcccgacactttgggaggctgaggtgggtggatcacttggggccaggagtttgagaccaatctggccaacatggtgaaaccctgtctctactaaaaatcccagctactggggaggctgaggcacaagaatcacttgaatccaggaggcggaggttgcagtaaacc----aagatcatgccattgtacttcagcctggttgagagagcaagattct-gtctc-aaaaa----------------------aTA--------tgtgtg--------tgtgtgtgtgtgtgtgCAGCTAC
i calJac3.chr8             C 0 I 672
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52091980 501 -  59632846 I

a score=786615.000000
s hg38.chr7_GL383534v2_alt     44049 327 +    119183 atatgtgtatatatatttatatatatttatatgtgtgtgtgtgtgtgtatatatatatatatatgtgtatatatatatatatCTGTCTGAACAAATCGTCTTCTAGCTCCTGGCTTTGCAAAtgcagaaaactaagcactcccat---ttactgcgggtgcagggatactgtgacaccaccttctgaagggtaacttacagcttgtattaaattgtacattgtacacatcctctgatctaatgattctccttctcggagtgaggcctaaagaactatttctagacatgaacagtcatttactcacaaggatgctgatgttcacaggggtg
s panTro4.chr7             143144001 319 + 161824586 atatgtgtatatatatttatatatattt----gtgtgtgtgtgtgtgtgtatatatatatatatgt----atatatatatatGTGTCTGAACAAATTGTCTTCTAGCTCCTGGCTTTGCAAAtgcagaaaactaagcactcccat---ttactgcgggtgcagggatactgtgacaccaccttctgaagggtaacttacagcttgtattaaattgtacattgtacacatcctctgatctaatgattctccttctcagagtgaggcctaaagaactatttctacacgtgaacagtcatttactcacaaggatgctgatgttcacaggggtg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138964935 307 + 157549271 atatgtgtacatacatttatatatattt--------atgtgtgtgtgtatatatatat------------gtatatatatatCTGTCTGAACAAATCGTCTTCTACCTCCTGGCTTTGCAAAtgcagaaaaataagcactcccat---ttactgcgggtgcagggatactacggcaccaccttctgaagggtaacttacagcttgtattaaattgtacattgtatacatcttctgatccagtgattccccttctcggagtgaggcctaaagcactatttctagatgtgaacagtcatttactcacaaggatgctgatgttcacagtggtg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93085400 283 + 110113093 atatgtgtatatatatttatatttat--------------------------------------------gtatatatatatCTGTCTGAACAAATCGTCTTCTAGCTCCTGGCTTTGCAAAtgcagaaaaataagcactcccat---ttactgcgggtgcagggatactatggcaccaccttctgaagggtaacttacagcttgtattaaattgtacattgtatacatcctctgatccaatgattccctttcttgaagtgaggcctaaagaactatttctagatgtgaacagtcatttactcacaaagatgctgatgttcacagtggtg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180984019 296 + 198365852 atatgtgtatatatg----------------------tgtctgtgtgtgtgtatatat------------atatgtatatATCTGTCTGAACAAATCGCCTCCTAGTTCCTGGCTTTGCAAAtgcagaaaaataagcacccccatttattactgctggtgcagggatacaatggcaccaccttctgtagcgtaacttacagcttgtattaaattgtacattgtatatatcctctgatccaatgattccccttctcggattgtggcctaaagaactatttctagatgtgaacagtcatttactcataaggatgctaatgtgcacggtggtg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174729770 294 + 192294377 atatgtgtatatatg----------------------tgtctgtgtgtgtg--tatat------------atatgtatatatCTGTCTGAACAAATCGCCTCCTAGTTCCTGGCTTTGCAAAtgcagaaaaataagcacccccatttattactgctggtgcagggatacaatggcaccaccttctgaagcgtaacttacagcttgtattaaattgtacattgtatatatcctctgatccaatgattccccttctcggattgtggcctaaagaactatttctagatgtgaacagtcatttactcataaggatgctaatgtgcacggtggtg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163396119 308 + 180432695 atatgtgtgtatatgtgtgtgtgtat----------atgtgtgtgtgtgtgtgtatat------------atatgtatatatctgtctGAACAAATCGCCTCCTAGTTCCTGGCTTtgcaaatgcagaaaaataagcACCCCCATTTATTACTGCTGGTGCAGGGGTACAATGGCACCACCTTCTGAAGCGTAACTTACAGCTTGTATTAAATTGTACATCGTATATATCCTCTGATTCAATGATTCCCCTTCTTGGATTGTGGCCTGAAGAACTATTTCTAGATGTGAACAGTCATTTACTCATAAGGATGCTGATGTGCACGGTGGTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110427202 306 + 127223203 atatgtgtatatatg--tgtgtatat----------gtgtgtatgtgtgtgtgtatat------------atatgtatatatCTGTCTGAACAAATCGCCTCCTAGTTCCTGGCTTTGCAAAtgcagaaaaataagcacccccatttattactgctggtgcagggatacaatggcaccaccttctgaagcgtaacttacagcttgtattaaattgtacattgtatatagcctctgatccaatgattccccttctcggattgtggcctaaagaactatttctggatgtgaacagtcatttactcataaggatgctgatgtgcacggtggtg
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23775830 326 - 128169293 atatatatatattgatttgttcatatatatatatatatatatatatacatatatatatgaacaaatcaatatatatatatTTCTCTCTGAAGAAATCACCTTCTAGCTCCTGGCTTAGCAAAtgtagaaaaataagcactcccat---ttactgctggagcaggaataaaatggcaccaccttctgaagcgtaacttacagtttgtattaaattatacactgtatatgccctctgatccaatgattctacttcttggactgtggcctaaagaactatttctaggtgtgaatag-catttactcacaaggatattgatgttcacagtggtg
i calJac3.chr8             I 672 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52091980 501 -  59632846 I

a score=619217.000000
s hg38.chr7_GL383534v2_alt     44376 182 +    119183 aaaaaaacaaggaacaccctaaaagcccaataacagtgaaacagttaaataaattgtgatgtatctatatact-gaaatgctgtgaaaccacaataatgttgaggac-ataattcatgatacac-cggaaaggttaatataccaagttacaaaatttacatactgaatgacctcaataatct--ttt
s panTro4.chr7             143144320 182 + 161824586 aaaaaaacaaggaacaccctaaaagcccaataacagtgaaacagttaaataaattgtgatgtatctatatact-gaaatgctgtgaaaccacaataatgttgaggac-ataattcatgatacac-cagaaaggttaatataccaagttacaaaatttacatactgaatgacctcaataatct--ttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138965242 181 + 157549271 aaaaaaacaaggaacaccctaaaagcccaatagca-tgaaacagttaaataaattgtgatgtatctatatatt-gaaacgctgtgaaaccacaataatgttgaggac-ataattcatgatacac-cagaaaggttaatataccaagttacaaaatttacatactgaatgacctcaataatcc--ttt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93085683 182 + 110113093 aaaaaaacaaggaacaccctaaaagcccaataacagtgaaacagttaaataaattgtgatgtatctatatatt-gaaatgctgtgaaaccacaataacgttgaggac-ataattcatgatacac-cagaaaggttaatatactaagttacaaaatttacatattgaatgaccttaataatcc--ttt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180984315 183 + 198365852 aaaaaaataaggaacaccctaaaaccccaataacagtgaaacagttaaataaattgtgatgtatctatatatt-gaaatgctgtgaaaccacaataatattgaggactataattcatgatacac-cggaaaggttaatataccaagttacaaaatttacatactaaatgacctcaatAATCC--ttt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174730064 182 + 192294377 aaaaaaataaggaacaccctaaaaccccaataacagtgaaacagttaaataaattgtgatgtatctatatatt-gaaatgctgtgaaaccacaataatattgaggactataattcatgatacac-cggaaaggttaatatgccaagttacaaaatttacatactaaatgacctcaatAATCC---tt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163396427 185 + 180432695 aaaaaaaTAAGGAACACCCTAAAACCCCAATAACAGTGAAACAGTTAAATAAATTGTgatgtatttatatatt-gaaatgctGTGAAACCACAATAATATTGAGGACTATAATTCATGATACAC-CGGAAAGGTTAATATACCAAGTTACAAAATTTACATACTAAATGACCtcaataatccttttt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110427508 184 + 127223203 aaaaaaataaggaacaccctaaaaccccaataacagtgaaacagttaaataaattgtgatgtatctatatatt-gaaatgctgtgaaaccacaataatattgaggactataattcatgatacat-cggaaaGGTTAATATACCAAGTTACAAAATTTACATACTAAATGACCTCAATAATCC-tttt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23776156 183 - 128169293 aaaaaaataaggaacaaactgaaagcccaacaacagtgaaacaattaaatacattgtgatatatctatatact-aaaatgctgtgaaaccacaataatgttgaaaactacaattcatgatgcac-cggaaaggtgaccataccaagttacaaaatttaattaccgaatgacctcaataatta--ttt
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52092481 185 -  59632846 aaaaTaaaaagaaacaacctaaaagtctaatagcagtgatatagttaaatgaatcatgatacatctatacaCCAAAAATGCTTTGAAACCACCATGATGTTGAGAACCATTATGCATGATATTCATGGAAAGGTTATCATACCAGCTTAGACATTTTAGATGCTGAATGACCTCCATATTCT--TTT
i canFam3.chr16            I 501 C 0
e mm10.chr6                 40421164 991 + 149736546 I

a score=31252.000000
s hg38.chr7_GL383534v2_alt     44558 17 +    119183 ttttttttt----cttttgga
s panTro4.chr7             143144502 16 + 161824586 tttttttt-----cttttgga
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138965423 14 + 157549271 tttttt-------cttttgga
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93085865 16 + 110113093 tttttttc-----cttttgga
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180984498 21 + 198365852 tttttttctttcccttttgga
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174730246 21 + 192294377 tttttttctttcccttttgga
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163396612 21 + 180432695 tttttttctttcccttttgga
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110427692 21 + 127223203 ttttttcctttcccttttaga
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52092666 17 -  59632846 TTGTtttgt----ttttaaga
i canFam3.chr16            C 0 I 141
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23776339  0 - 128169293 C

a score=178860.000000
s hg38.chr7_GL383534v2_alt     44575 71 +    119183 aatggagtctcgctctgttgcccaggctggagtgcagtggtgcaatctcagctcaccgcaacctccacctc
s panTro4.chr7             143144518 71 + 161824586 gatggagtcttgctctgttgcccaggctggagtgcagtggtgcaatctcagctcaccgcaacctccacctc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138965437 71 + 157549271 gatggagtctcactctgttgcccaggctggagtgcagtggtgcgatctcagctcaccgcaacctccgcctc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93085881 71 + 110113093 gatggagtctcgctctgttgcccaggctggagtgctgtggtgcgatctcagctcactgcaacctccgcctc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180984519 71 + 198365852 gacggagtctcgctctgttgcccaggctggagtgcagtggcgcgatctcagctcactgcaacctccacctc
i rheMac3.chr3             C 0 I 3
s macFas5.chr3             174730267 71 + 192294377 gacggagtctcgctctgttgcccaggctggagtgcagtggcgcgatctcagctcactgcaacctccacctc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163396633 71 + 180432695 gacggagtctcgctctgttgcccaggctggagtgcagtggcgcgatctcagctcactgcaacctccacctc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110427713 71 + 127223203 gacggagtctcgctctgttgcccaggctggagtgcagtggcgcgatctcagctcactgcaacctccacctc
i chlSab2.chr21            C 0 I 3
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52092683 141 -  59632846 I
e calJac3.chr8              23776339  0 - 128169293 C

a score=3294.000000
s hg38.chr7_GL383534v2_alt     44646 3 +    119183 tgg
s panTro4.chr7             143144589 3 + 161824586 tgg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138965508 3 + 157549271 cgg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93085952 3 + 110113093 tgg
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174730338 3 + 192294377 cGG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163396704 3 + 180432695 cgg
i papAnu2.chr3             C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52092683 141 -  59632846 I
e calJac3.chr8              23776339 0 - 128169293 C
e chlSab2.chr21            110427784 3 + 127223203 I
e rheMac3.chr3             180984590 3 + 198365852 I

a score=98994.000000
s hg38.chr7_GL383534v2_alt     44649 187 +    119183 gttcaagcgattctcctgcctcagcttcccgagtagctgggactacaggtgcacactgccacgcccagctaagtttttgtattttagtagagacggggtttcaccgttgttgctcaggctggtctcgaactcctgagctcaggcaatctgcctgcctcggcctcccaaagtgctaggattacaggcg
s panTro4.chr7             143144592 186 + 161824586 gttcaagcgattctcctgcctcagcctcccgagtagctgggactataggcgcacgctgccacgcccagctaagtttttgtattttagtagagacggggtttcaccgttgttgctcaggctggtctcgaactcctgagctcaggcaatctgcctgcctcagcctcccaaagtgctaggattacag-cg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138965511 187 + 157549271 gttcaatcgattctcctgcctcagcctcctgagtagctgggactacaggcgcacactgccacgcccagctaagtttttgtattttagtagagacggggtttcaccgttgttgctcaggctggtctcgaactcctgagctcaggcaatccgcccgcctcagcctcccaaagtgctaggattacaggcg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93085955 187 + 110113093 gttcaagcgattctcctgcctcggcctcccaagtagctgggactacaggcacatgctgccatgcccagctaagtttttgtattttagtagagacagggtttcaccgttgttgctcaggctggtcttgaactcctgagctcaggcaatccgcctgcctcggcctcccaaagtgctaggattacaggca
i nomLeu3.chr13            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52092683 141 -  59632846 I
e calJac3.chr8              23776339   0 - 128169293 C
e chlSab2.chr21            110427784   3 + 127223203 I
e papAnu2.chr3             163396707   0 + 180432695 C
e macFas5.chr3             174730341   0 + 192294377 C
e rheMac3.chr3             180984590   3 + 198365852 I

a score=18015.000000
s hg38.chr7_GL383534v2_alt     44836 43 +    119183 tgagccactg---cgcccgg------ccaataatcctttttaaaagaaataa
s panTro4.chr7             143144778 42 + 161824586 tgagccaccg---cgcccgg------ccaataatcctttttaaaa-aaataa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138965698 40 + 157549271 tgagccacca---tgcccgg------ccaataatcctttataaaa-aa--aa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93086142 38 + 110113093 tgagccaccg---tacccgg------ccaataatcctttttaaaa-----aa
i nomLeu3.chr13            C 0 C 0
s canFam3.chr16             52092824 45 -  59632846 taaaccgctgacccacccaggGATCCCCCATATTCTTTTTTAAAA-------
i canFam3.chr16            I 141 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23776339  0 - 128169293 C
e chlSab2.chr21            110427784  3 + 127223203 I
e papAnu2.chr3             163396707  0 + 180432695 C
e macFas5.chr3             174730341  0 + 192294377 C
e rheMac3.chr3             180984590  3 + 198365852 I

a score=238934.000000
s hg38.chr7_GL383534v2_alt     44879 245 +    119183 aataaaataaaacgtgtatgtataatatatatttgcacatgggaaaa-gactagaatggtataaaacgaaatgttaacagtagatatgtctggctggtgagatca-------tttttttctttgagcttttctctattttttaaagtttcctataataactatttcttaattttatacttagTCAttttaaacttttcactatgaacattttcaaacatatacacaaaatgtagaaagaagag---aatgaacccc
s panTro4.chr7             143144820 245 + 161824586 aataaaataaaacgtgtatgtataatatatatttgcacatgggaaaa-gactagaatggtataaaacgaaatgttaacagtagatatgtctggctggtgagatca-------tttttttctttgagcttttctctattttttaaagtttcctataataactatatcttaattttgtacttagTCAttttaaacttttcactatgaacattttcaaacatatacacaaaatgtagaaagaagag---aatgaacccc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138965738 244 + 157549271 aat-aaataaaacgtgtatgtataatatatatttgcacatgggaaaa-gactagaatggtataaaatgaaatgttaacattagatatgtctggctggtgagatca-------gttttttctttgagcttttctctattttttaaagtttcctataataactatatgttaattttatacttagtcattttaaacttttcactatgaacattttcaaacatatacacaaaatgtagaaagaacag---aatgaacccc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93086180 242 + 110113093 aat-aaataaaacgtatatgtataatatatatttgcacatgggaaaa-gactagaatggtataaaacgaaatgttaacagtagatatgtctggctggtgagatca-------tttttttctttgagcttttctctatttttt--agtttcctataataactatatgttaattttatacttagTCAttttaaacttttcactatgaacattttcaaacatatacacaaaatgtagaaagaggag---aatgaacccc
i nomLeu3.chr13            C 0 C 0
s calJac3.chr8              23776339 243 - 128169293 aagaaaataaaacgtgtatgtataacatatatttgcacctgggaaaa-tactaggaggatataaaacaaaatgttaacagtagataggtctggctggtgacat---------tttttttttttgagcttttctcta-tttttaaaatttcccataataaCTA--CGGTAATTTCATATTTAGTCATTTTAAACTTTTCACTATGAACATTTTGAAAcatatacacaaaatgtagaaagaagagaataatgaacccc
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52092869 226 -  59632846 ----------ATTGTATATGT-----ATATATTTATACATGGGAAAAGGACTAGAAGGATAT------agatgttaatagcagatacgtctggatggtggaatcacgttctttttattttcttgagcttttgtctctttttc--agtcttctacaataattatatgataattttacatttagtc-ttttacacttttcattatggaaaatt---aaaacttatacaaagagtagaaaaaagaa---tattaagctc
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e chlSab2.chr21            110427784   3 + 127223203 I
e papAnu2.chr3             163396707   0 + 180432695 C
e macFas5.chr3             174730341   0 + 192294377 C
e rheMac3.chr3             180984590   3 + 198365852 I

a score=1842079.000000
s hg38.chr7_GL383534v2_alt     45124 590 +    119183 -atgtatttatcatctagcttcaa-------taatatttgatccatatggttatatctataccctataccctaccattaccac-ttttttcctagaatgtcttaaagaaaatcccacctcataacatttcattgataagtgctttgtaaggcatctctaactgataaagtctgtttaaataacgtaacacataatcaccatgccattatctcattta--acaataataatgccttaatata----aatatctagtccacattcaaaatacagccactgtcccccaaatgctattttaccgttggtttgtttgaattgagatctgagcaaggt---aaaatgtggttatgagtcgtaggtccc-tttattcaataacagtccctcttgcc---tctAATTTAATTTTTTAAATTATGAAATAGTTCTCCAATATCTTCTGAT---TAAGAAATAATCATTAAAAAGACTCTTTAGAGAGATACTGAGGGCAAAAATTGTAGATGAAATACAAGTAAATAGGTTTGGAACATCAGAAGTCAGAAGAAATATAAAACACAGATTAAGTG-TTGCAGAAATGAAGACTAGTGAATTTATGTAAAAGT----------------------------------TGCTGCTGTATTC
s panTro4.chr7             143145065 590 + 161824586 -atgtatttatcatctagcttcca-------caatatttgatccatatggttatatctataccctataccctaccattaccac-ttttttcctagaatgtcttaaagaaaatcccacctcataacatttcattgataagtgctttgtaaggcatctctaactgataaagtctgtttaaataacgtaacacataatcaccatgccattatctcattta--acaataataatgccttaatata----aatatctagtccacattcaaaatacagccactgtcccccaaatgctattttacagttggtttgtttgaattcagatctgagcaaggt---aaaatgtggttatgagtcgtaggtccc-tttattcaataacagtccctcctgcc---tctAATTTAATTTTTTAAATTATGAAATAGTTCTCCAATATCTTCTGAT---TAAGAAATAATCATTACAAAGACTCTTTAGAGAGATACTGAGGGCAAAAATTGTAGATGAAATACAAATAAATAGGTTTGGAACATCAGAAGTCAGAAGAAATATAAAACACAGATTAAGTG-TTGCAGAAATGAAGACTAGTGAATTTATGTAAAAGT----------------------------------TGCTGCTGTATTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138965982 582 + 157549271 -atgtatttatcatctagcttcga-------taatatttgatccatatggttatatctataccctataccctaccatcatcac-ttttttcctagaatgtcttaaagaaaatcccacctcataacatttcattgacaagtgctttgtaaggcatctgtaattgacaaagtctgtttaaataacataacacataatcaccatgccattatctcatt-----caacaataatgccttaatata----aatatccagtccacattcaaaatacagccactgtcccccaaatgctattttacagttggtttgcttgaattgagatctgagcaaggt---AAAATGTGGTTATGAGTTGTAGGTCCC-TTTATTCAATAACAGTCCCTCTTGCC---TC-----TAATTTTTTAAATTATGAAATAGTTCTCCAATATCTTCTGAT---TAAGAAATAATCATTAAAAAGACTCTTTAGAGAGATACTGAGGACAAAAATTGTAGATGAAATACAAGTAAATAGGTTTGGAACATCATAAGTCAGAAGAAATATAAAACACAGATTAAGTG-TTGCAGAAATGAAGACTAGTGAATTTATGTAAAAGT----------------------------------TGCTGCTGTATTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93086422 586 + 110113093 -atgtatttatcatctagcttcaa-------taatatttgatccatatggttatatctataccctatacgctaccatcaccac-ttctttcctagaatgtcttaaacaaaatcccacctcataacatttcattgataagtgctttgtaaagcatctctaactgataaagtctgtt----taacgtaacacgtaatcaccatgccattatctcattta--acaataataatgccttaatata----aatatccagtccacattcaaaatacagccactgtcccccaaatgctattttacagttggtttgtttgaattgagattggagcaaggt---aaaatgtggttatgagtcgtaggtccc-tttattcaataacagtccctcttccc---tctAATTTAATTTTTTAAATTATGAAACAGTTCTCCAATATCTTCTGAT---TAAGAAATAATCTTTAAAAAGACTCTTTAGAGAGATACTGAGGGCAAAAGTTGTAGATGAAATACAAGTAAATAGGTCTGGAACATCAGAAGTCAGAAGAAATATAAAACACAGATTAAGTG-TTACAGAAATGAAGACTAGTGAATTTATGTAAAAGT----------------------------------TGCTGCTGTATTC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180984593 587 + 198365852 -atgtatttatcatctagcttcaa-------taatatttgatccatatggttatatctataccctataccttaccatcaccactttttttcctagaatgtcttaaagaaaatcccacctcataacatttcattgataaatgctttgtaaggcatctctaactgataaaatctgtttaaataac-taacacataatcaccatgccattatctcacc-----taataataatgccttaatata----aatatccagtccacattcaaaatatagccactgtcccccaaactctatttcacagttggt----ttgaatcgagatctgagcaaggt---GAAATGTGGTTATGAGTCATGGGTCCG-TTTCTTCAATAACAGTCCCTCTTGCCTTTTCTAATTTAATTTGTAAAATTATGAAATAGTTCTCCAATATCTTCTGATTCATTAGAAATAATCATTAAAAAGACTCTTT--AGAGATACTGAGGGCAAAAATTGTAGATGAAATACAAGTAAATAGGTTTGGAACATTGGAAGTCAGAAGAAATAAAAAACACAGATTAAGTG-CTGCAGAAATGAAGACTAGTGAATTCATGTAAAAGC----------------------------------TGCTGCTGTATTC
i rheMac3.chr3             I 3 C 0
s macFas5.chr3             174730341 587 + 192294377 -atgtatttatcatctagcttcaa-------taatatttgatccatatggttatatctataccctataccttaccatcaccactttttttcctagaatgtcttaaagaaaatcccacctcataacatttcattgataaatgctttgtaaggcatctctaactgataaaatctgtttaaataac-taacacataatcaccatgccattatctcacc-----taataataatgccttaatata----aatatccagtccacattcaaaatatagccactgtcccccaaacgctatttcacagttggt----ttgaatcgagatctgagcaaggt---AAAATGTGGTTATGAGTCATGGGTCCG-TTTCTTCAATAACAGTCCCTCTTGCCTTTTCTAATTTAATTTGTAAAATTATGAAATAGTTCTCCAATATCTTCTGATTCATTAGAAATAATCATTAAAAAGACTCTTT--AGAGATACTGAGGGCAAAAATTGTAGATGAAATACAAGTAAATAGGTTTGGAACATTGGAAGTCAGAAGAAATAAAAAACACAGATTAAGTG-CTGCAGAAATGAAGACTAGTGAATTCATGTAAAAGC----------------------------------TGCTGCTGTATTC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163396707 586 + 180432695 -atGTATTTATCATCTAGCTTCAA-------TAATATTTGATCCATATGGTTATATCTATACCCTATACCTTACCATCACCAC-TTTTTTCCTAGAATGTCTTAAAGAAAATCCCACCTCATAACATTTCGTTGATAAATGCTTTGTAAGGCATCTCTAACTGATAAAATCTGTTTAAATAAC-TAACACATAATCGCCATGCCATTATCTCACC-----TAATAATAATGCCTTAATATA----AATATCCAGTCCACATTCAAAATATAGCCACTGTCCCCCAAACGCTATTTCACAGTTGGT----TTGAATCGAGATCTGAGCAAGGT---AAAATGTGGTTATGAGTCATGGGTCCG-TTTCTTCAATAACAGTCCCTCTTgccttttctaatttaatttttaaaattatgaaatagttCTCCAATATCTTCTGATTCATAAGAAATAATCGTTAAGAAGACTCTTT--AGAGATACTGAGGGCAAAAATTGTAGATGAAATACAAGTAAATAGGTTTGGAACACTGGAAGtcagaagaaatacaaaacacagaTTAAGTG-CTGCAGAAATGAAGACTAGTGAATTCATGTAAAAGC----------------------------------TGCTGCTGTATTC
i papAnu2.chr3             C 0 I 2245
s chlSab2.chr21            110427787 586 + 127223203 -atgtatttatcacctagcttcaa-------taatatttgatccatatggttatatctataccctataccttaccatcaccac-ttttttcctagaatgtcttaaagaaaatcccacctcataacatttcgttgataaatgctttgtaaggcatctctaactgataaaatctgtttaaataac-taacacataatcgccatgccattatctcacc-----taataataatgccttaatata----aatatccagtccacattcaaaatatagccactgtcccccaaacgctatttcacagttggt----ttgaatcgagacctgagcaaggt---AAAATGTGGTTATGAGTCATGGGTCCG-TTTCTTCAATAACAGTCCCTCTTGCCTTTTCTAATTTAATTTTTAAAATTATGAAATAGTTCTCCAATATCTTCTGATTCATAAGAAATAATCGTTAAAAAGACTCTTT--AGAGATACTGAGGGCAAAAATTGTAGATGAAATACAAGTAAATAGGTTTGGAACACTGGAAGTCAGAAGAAATACAAAACACAGATTAAGTG-CTGCAGAAATGAAGACTAGTGAATTCATGTAAAAGC----------------------------------TGCTGCTGTATTC
i chlSab2.chr21            I 3 C 0
s calJac3.chr8              23776582 595 - 128169293 -atgtatttgtcatctagcttcaacaataatcaatatttgatcaatatggttacatcaataccgt----------accatcac-ttttttcctagaatgtcttaaagaaaatccaacatcattacattt-actgataaatgctttgtaaggcatctctaactgatgaggtctgtttaaataatgtaacacacaaccaccatgccatgatcccaccta--acaggaataatgccttaatataaactaatatccagtccacgttcaaaATATAGCCATTCTCCCCCAGATGCTAGTTTGGAATTGGTGTGTTTAAACTGAGATCTGAGCAAGCT---AAGATGTGGTTACGAGTCACAGGTCCC-ACTATGCAACAACAGTCCCCCTTGCCTTTTCTATTTTAATTTCTC-AATTATAAAATAGTTCTCCAGTATCTTCTGATGAATAAGAAATAATCATTAAGAAGACTCTTTAGAGAGATCCTGAGGGCAAAAGTTGTAGATGAAATACAAATGAATAGGTTCGGAACATCACAAGCCAGAAGAAATCTAAAACACAAATCAAGTG-TTGCAGAAATCAAGATTAGTGAATTTATGTAAAAGT----------------------------------GACTGCTGCAGTC
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52093095 625 -  59632846 cat-catccatcacttagcttcaacaatgatcaatattttgtcaatacggttacatctacatcctgtcccc--ccactgccattcttcttcctggaatgttttaaagtaaatcccttatcataacattttacccatcaacactttggtatacatctttaactgataaagtctatttaaaaaag----agcataaacagcatgccattatctcgcctaacaaaataatgaagcccaaacacaaaataatacccagtccacactcaaattataccaactgtccccaaaatg---ttttaaacttggc-tgtctgaatcatgatctaagcaaggtccagagatgtggctacgtgtcataagtcccttttatttcataacactccctccttctttttctATTT---TTTTTTAAATTATAAGATAGTTCTCCAG---CTTCTGACTAATGAGAACCAGTCACAGAAAGGACTAACTGGAGAAATACTGAAGCCAAGAGTCATGGAGGCAATCT-----AATAAGTTTGGGATATGAGAAATAAGAATGGATAGAAAACACAGATTCAGTGTTTTCAGAAATCAAGTCTGGTTAATTTAAATATAAGTCACCAAAAATCTTTAAAATATATATATATGTCACTGCTGCTGTC---
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I

a score=752739.000000
s hg38.chr7_GL383534v2_alt     45714 228 +    119183 AAGTATTATCCTAAGCTAGACCTAAGCTTATCTAACTGTGCTTCTTTCTTTTCCTCATACTCTGTCATACAAGTCTCTTCTCTTATGTTACCTATAGCCCTCTTTAACCACCAAGCTGCAAAACCTTTCTAGCTATGACTCAAAATCTAGAAGCCATAAAAAGATGCATGAATTCA---AAGAAAAACACCTACATGACAAGAAGGCAATgttaaaagacaaatgaaaaag
s panTro4.chr7             143145655 228 + 161824586 AAGTATTATCCTAAGCTAGACCTAAGCTTATCTAACTCTGCTTCTTTCTTTTCCTCATACTCTGTCATACAAGTCTCTTCTCTTATGTTACCTATAGCCCTCTTTAATCACCAAGCTGCAAAACCTTTCTAGCTATGACTCAGAATCTAGAAGCCATAAAAAGATGAATGAATTCA---AAGAAAAACACCTACATGACAAGAAGGCAATgttaaaagacaaatgacaaag
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138966564 223 + 157549271 AAGTATTATCCTAACCTAGACCTAAGCTTATCTAACTGTGCTTCTTTCTTTTCCTCATACTCTGTCATACAAGTTTCTTC-----TGTTACCTATAGCCCTCTTTAATCACCAAGCTGCAAAACCTTTCTAGCTATGACTCAAAATCTAGAAGCCATAAAAAGATGAATGAATTCA---AAGAAAAACACCTACATGACAAGAAGGTAATgttaaaagacaaatgacaaag
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93087008 224 + 110113093 AAGTATTATCCTAACCTAGACCTAAGCTTATCTAACTGTGCTTCTTTCTTTTCCTCATACTCTGTCATACAAGTCTCTTCTCTTATGTTACCTATAGCCCTCTTTAATCACCAAGCTGCAAAACCTTTCCAGCTATGACTCAAAATCTAGAAGCCATAAAAAG----ATGAATTCA---AAGAAAAACACCTACATGACAAGAGGGTAATgttaaaagacaaatgataaag
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180985180 223 + 198365852 AAGTATTATCCTAACCTAGACCTGAGCTTATCTAACTGTGCTTCCTTCTCTTCCTCATACTCTGTCATGTAAGTCTCTTC-----TGTTACCTATAGCCCTCTTTAATCACCAAGCTGTAAAACTTTTCTAGCTATGACTCAAAATCTAGAAGCCATAAAAAGATGAATGAATTCA---AAGAAAAACACCTATATGACAAGAAGGTAATGTTAAAAGACAAATGACAAAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174730928 223 + 192294377 AAGTATTATCCTAACCTAGACCTGAGCTTATCTAACTGTGCTTCCTTCTTTTCCTCATACTCTGTCATGTAAGTCTCTTC-----TGTTACCTATAGCCCTCTTTAATCACCAAGCTGTAAAACTTTTCTAGCTATGACTCAAAATCTAGAAGCCATAAAAAGATGAATGAATTCA---AAGAAAAACACCTATATGACAAGAAGGTAATGTTAAAAGACAAATGACAAAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163399538 223 + 180432695 aagtattatccTAACCTAGACCTGAGCTTATCTACCTgtgcttccttcttttcctcataCTCTGTCATATAAGTCTCTTC-----TGTTACCTATAGCCCTCTTTAATCACCAAGCTGTAAAACTTTTCTAGCTATGACTCAAAATCTAGAAGCcataaaaagatgaatgaattca---AAGAAAAACACCTATATGACAAGAAGGTAATGTTAAAAGACAAAGGACAAAG
i papAnu2.chr3             I 2245 C 0
s chlSab2.chr21            110428373 223 + 127223203 AAGTATTATCCTAACCTAGACTTGAGCTTATCTAACTGTGCTTCCTTCTTTTCCTCATACTCTGTCATATAAGTCTCTTC-----TGTTACCTATAGCCCTCTTTAATCACCCAGCTGTAAAACTTTTCTAGCTAAGACTCAAAATCTAGAAGCCATAAAAAGATGAATGAATTCA---AAGAAAAACACCTATATGACAAGAAGGTAATGTTAAAAGACAAATGACAAAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23777177 226 - 128169293 AAGAATTACCCCAGCCTAGGCCTGAGCTTATCTAACT-TGCTTCTTTCTTTTCCTCATACTCTGTCATACAAGTCTCTTCTCTTATGTTACCTATAA-CCTCTTTAATCACCAAGCTGCAAAGCCTTTCTAGCTATGACTCAAAATCTGGAAGCCATAAAAAGATTAATGAATTCA---AAGAAAAACACCTACATGCCAAGAAGGTCATGTTGaaagacaaatgacaaag
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52093720 212 -  59632846 AAATACAGCCCTGGCCTGGACCTGGGCTCACCTCACA-TGCTTC--TCTCCCCCTC-TACTC--TCACGGGAGTCCTTCC-----TCTCA-----AGCCCTCTGTAAT--CCAAGCTAGAAAGCCTTTCTAGCTGTGACTCAAATTCTAGAAGCCATGAAAATATTAACGAATTCAATGAAGAAAAACATCCGCATGACAA-AAAGTCATGTGAAAAGATGAATGACAggg
i canFam3.chr16            C 0 I 356
e mm10.chr6                 40421164 991 + 149736546 I

a score=200023.000000
s hg38.chr7_GL383534v2_alt     45942 83 +    119183 tggta-aaatattttcaatttatacaaagaaacaaagaaaaaatttccctattgtacaaactcctagaaattaataagaaaagg
s panTro4.chr7             143145883 78 + 161824586 tggta-aaatattttcaatttatacaa-----caaagaaaaaatttccctattgtacaaactcctagaaattaataagaaaagg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138966787 78 + 157549271 tagta-aaatattttcaatttatacaa-----caaagaaaaaatttccgtattgtacaaactcctagaaattaataagaaaagg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93087232 78 + 110113093 tggta-aaatattttcaatttatacaa-----caaagaaaaaatttccctattgtacaaactcctagaaattaataagaaaagg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180985403 79 + 198365852 TGTTATATAAGTTTTCAATTTATATAA-----CAAAGAAAAAATTTCCCTATCGTACAAACTCCTAGAAATGAATAAGAAAAgg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174731151 79 + 192294377 TGTTATATAAGTTTTCAATTTATATAA-----CAAAGAAAAAATTTCCCTGTCGTACAAACTCCTAGAAATGAATAAGAAAAgg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163399761 79 + 180432695 TGTTATATAAGTTTTCAATttatataa-----caaagaaaaaatttcccTATCGTACGAACTCctagaaattaataagaaaagg
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110428596 76 + 127223203 TGTTATATAAGTTTTCAATTTATATAA-----CAAAGAAAAaatttccctatcgtgcaaactcctagaaattaat---aaaagg
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23777403 74 - 128169293 tggta-aagtattttcaatttacatca-----caaagaacaaatttccctattctacaaactcctaga----aataagaaaagg
i calJac3.chr8             C 0 I 2032
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52093932 356 -  59632846 I

a score=147851.000000
s hg38.chr7_GL383534v2_alt     46025 62 +    119183 ctgggtgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtagatcac
s panTro4.chr7             143145961 62 + 161824586 ctgggtgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtagatcac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138966865 62 + 157549271 tcgggcctggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtaggtcac
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93087310 62 + 110113093 caggacatggtggctcatgcctgtaatcccagcactttgggaggttgaggcgggtagatcac
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180985482 62 + 198365852 ccgggcgcggtggttcatgcctgtaatcccagcactttgggaggccgaggtgggtagatcac
i rheMac3.chr3             C 0 I 15
s macFas5.chr3             174731230 62 + 192294377 ccgggcgcggtggttcatgcctgtaatcccagcactttgggaggccgaggtgggtagatcac
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163399840 62 + 180432695 ccaggtgcggtggttcatgcctgtaatcccagcactttgggaggccgaggtgggtagatcac
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110428672 62 + 127223203 ccgggtgcggtggttcatgcctgtaatcccagcactttgggaggccgaggtgggtagatcac
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52093932 356 -  59632846 I
e calJac3.chr8              23777477 2032 - 128169293 I

a score=20886.000000
s hg38.chr7_GL383534v2_alt     46087 15 +    119183 ccaaggtcgggagtt
s panTro4.chr7             143146023 15 + 161824586 ccaaggtcgggagtt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138966927 15 + 157549271 ccaaggttgggagtt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93087372 15 + 110113093 ccaaggtcaggagtt
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174731292 15 + 192294377 atgaggctgggagtt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163399902 15 + 180432695 atgaGGCTGGGAGTT
i papAnu2.chr3             C 0 I 1
s chlSab2.chr21            110428734 15 + 127223203 atgaggctgggagtt
i chlSab2.chr21            C 0 I 1
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52093932 356 -  59632846 I
e calJac3.chr8              23777477 2032 - 128169293 I
e rheMac3.chr3             180985544 15 + 198365852 I

a score=206425.000000
s hg38.chr7_GL383534v2_alt     46102 162 +    119183 agagaccactctgaccaacatggagaaaccccacctctactaaaaatacagaattagccaggcgtggtgacacatgcctgtaatcccagctactctggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcaatgagctgagatcacacc
s panTro4.chr7             143146038 162 + 161824586 agagaccactctgaccaacatggagaaaccccacctctactaaaaatacagaattagccaggcgtggtgacacatgcctgtaatcccggctactctggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgtgatgagctgagatcacacc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138966942 162 + 157549271 agagactactctgaccaacatggagaaaccccatctctactaaaaatacagaattagccaggcatggtgacacatgcctgtaatcccagctactctggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcgatgagctgagatcacacc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93087387 162 + 110113093 agagaccactcggaccaacatggagaaaccccatctccactaaaaatacagaattagccaggcgtggtgacacatgcgtataaacccagctactctggaggctgaggcaggagaattgcttgaacccgggaggcggaggttgcgatgagctgagatcacacc
i nomLeu3.chr13            C 0 C 0
s papAnu2.chr3             163399918 162 + 180432695 agagaccaccctgaccaacatggagaaaccctatctctactaaaaatacagaatttgccaggcgtggtggcacacgcctgcaatcccagctactcgggaggccgaggcaggacaatcgcttgaacccgggaggcagatgttgtggtgagctgagatcacacc
i papAnu2.chr3             I 1 C 0
s chlSab2.chr21            110428750 162 + 127223203 agagaccaccctgaccaacatggagaaaccctatctctactaaaaatacagaatttgccaggcgtggtggcacacgcctgcaatcccagctactcgggaggccgaggcaggagaatcgcttgaacccgggaggtggatgttgtggtgagccgagatcacacc
i chlSab2.chr21            I 1 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52093932 356 -  59632846 I
e calJac3.chr8              23777477 2032 - 128169293 I
e macFas5.chr3             174731307   0 + 192294377 C
e rheMac3.chr3             180985544  15 + 198365852 I

a score=1098422.000000
s hg38.chr7_GL383534v2_alt     46264 776 +    119183 attgcactccagcctgggacacaagagcgaaacttt------------------aaaaaaaaaaaaaaaaagtaaaagaaattaataagaaaaggtaaacaacaaaatgtagcaaaggctagaaatggttcacagaaaaagaaatacaaatgactcaaacatacataaaggtgcttaacctcacttataagaaaaatacaaattaaaactatactgatgtactgttcttttatccatcaggtt-----agaatgttcaaactttca---------ttttgtgttggcaacgttgaggtgaaacaggcattctcttgcattactactgggcatgc-aaatggcacaacctctatgggaagcaatttgacag-aatctattaaaattacata--catatatcctttgagccatcaatttcatttctgacaatttaatatacagatatacccctcacgtgtgaaatg---------cat-gatattcaatgcagcatcatttgtagcaggaaatggactggaaacaaccaaatgtctattaataatgaacttgat-aaatgctataattctatagaaggcatatgacacagctgaaaacaaggaagaaactctcaacctactgatatgaga--------tctttcatgct-gttgaatgaaaaaggctaggtgcaaaaca--acacaaataacatgctatcttttgcaagaaaagggagacagtaagaatatacatttgtatttgtatatatacacacacacacac----tttgggatgatacatgagaaatgaactgtgattactgagattatttggatggatatgggaactgggtgaag
s panTro4.chr7             143146200 782 + 161824586 attgcactccagcctgggacacaagagcgaaactct---tt-----------taaaaaaaaaaaaaaaaaagtaaaagaaattaataagaaaaggtaaacaacaaaatgtagcaaaggctagaaatggttcacagaaaaagaaatacaaatgactcaaacatacataaaggtgcttaacctcacttataagaaaaatacaaattaaaactatactgatgtactattcttttatccatcaggtt-----agaatgttcaaactttca---------ttttgtgttggcaatgttgaggtgaaacaggcattctcttgcattactgctgggcatgc-aaatggcacaacctctatgggaagcaatttgacag-aatctattaaaattacatatacatatatcctttgagccatcaatttcatttctgaaaatttaatatacagatatacccctcacgcgtgaaatg---------cat-gatattcaatgcagcatcatttgtagcaggaaatggactggaaacaaccaaatgtctattaataatgaacttgat-aaatgctataattctatagaaggcatatgacacagctgaaaacaaggaagaaactctcaacgtactgatatgaga--------tctttcatact-gttgaatgaaaaaggctaggtgcaaaaca--acacaaataacatgctatcttttgcaagaaaagggagacggtaagaatatacatttgtatttgtatatatatacacacacacac----tttgggatgatacatgagaaacgaactgtgattactgagattatttggatggatatgggaactgggtgaag
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138967104 784 + 157549271 attgcactccagcctgggaaacaggagcgaaactctttttt-----------ttttaaaaaaaaaaaaaaagtaaaaga----aataggaaaaggtaaacaacaaaatgtagcaaaggctagaaatggctcacagaaaaagaaatacaaatgactcaaacatatataaaggtgcttaacctcacttataagaaaaatacaaattaaaactatactgagttactgttcttttatccatcaggtt-----agaatgttcaaactttca---------ttttgtgttgacaacgttgagatgaaacaggcattctcttgcattactactgggcatgc-aaatggcacaacctctatgggaagtaatttgacag-aatctattaaaattacatatacatatatcctttgagccatcaatttcatttctgaaaatttaatatacagatatacccctcacatgtgaaatg---------cct-gatattcaatgcagcatcatttgtagcaggaaatggactggaaacaaccaaatgtctattaataatgaacttgat-aaatgctgtaattctatagaaggcatatgacacagctgaaaacaaggaagaaactctcaacgtactgatatgaga--------tctttcatact-gttgaatgaaaaaggctaggtgcaaaaca--acacaaataacatgctatcttttcccagaaaagggagacggtaagaatatacatttgtatttgtatatatatacacacacacacaca-ctttggatgatacatgagaaatgaattatgattacTGAGATTATTTGAATGGATATGGGAACTGGGTGACG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93087549 779 + 110113093 attgcactccagcctgggaaacaagagcgaaactctttttt-----------tt----aaaaaaaaaaaaagtaaaagaaattagtaaga------aaacaacaaaatgtagcaaaggctagaaatggttcacagaaaaggaaatacaaatgactcaaacatatataaaggtgcttaacctcacttataagaaaaatacaaattaaaactatactgatgtactgttcttttatccatcaggtt-----agaatgttcaaactttca---------ttttgtcttggcaatgtagagatgaaacaggcattctcttgcattactactgggcatgc-aaatggcacaacctctatgggaagcaatttgacag-aatctattaaaattacatatacatatatcctttgagccattaatttcatttctaaaaatttaatatacagatatacccctcacgtgtgaaatg---------cat-gatattcaatacagcatcatttgtagcaggaaatggactggaaaaaaccaaatgtctattaataatgaacttgat-aaatgctataattctatagaaggcatatgacacagctgaaaacaaggaagaaactctcaacgtactgataagaga--------tctttcatact-gttgaatgaaaaaggctaggtgcaaaaca--acacgaataacatgctatcttttgcaagaaaagggagacagtaagaatatacatttgtatttgtgtatatatacacacacacacacactttgggatgatacatgagaaatgaattgtgattactgagattatttgaatggatatgggaactgggtgaag
i nomLeu3.chr13            C 0 C 0
s papAnu2.chr3             163400080 794 + 180432695 attgcactccagcctgggcaataagagccaaactccatctc----aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaagaaaagctaAACAACAAAATGTAGCAAAGGCTAGAAATggttcacagaaaaagaaatacacatgacTCAAACATACATAAAGGTGCTCAACctcacttaaaagaaaaataaaaattaaaactatactgATGTACAGTTATTTTATCCATCAGGTT-----AGAATGTCCAAACTCCCAAACTTTCATTTTTGTGTTGGCAATGTTCTGATGAAACAGACATTCTCTTGCATTACTACTGGGCATGC-AAATGGCACAACCTCTATGGGAAGCAATTTGACAG-GATCTATTAAgatgacacacacatatatcctttAAGCCAtcaatttcatttctgaaaatttaatataaaaatatacccCTCCCGTGTGAAATG---------CAT-GATATTCAATGCAGCATCATTTGTAGCAGGAAATGGactggaaacaaccaaatatCTATCAATAATGAACTTGAT-ATATGCTATTATTCTATACAAGGCATATGACACAGCTGAAAACAAGGAAGAAACTCTCAACGTACTGAT--GAGA--------TCTTTCATACT-GTTGAATGAAAAAGGCTAGGTGCAAAACA--ACACGAATAACATGCTGTCTTTTGCAAGAAAAGGGAGACAGTATGAATATACgtttgtatttgtatatatacacacacacac------tttgagaTAATACATGAGAAATGAATTATGATTACCGAG---ATTTGGACGGATATGGGAACTGGGTGAAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110428912 769 + 127223203 attgcactccagcctgggcaacaagagccaaactccatctc----------------------aaaaaaaaaaaaaaaaaaaaattaagaaaagcta---aacaaaatatagcaaaggctagaaatggttcacagaaaaagaaatacaaatgactcaaacatacataaaggtgctcaacctcacttataagaaaaataaaaattaaaactatactgatgtacagttatttcttccatcaggtt-----agaatgtccaaactcccaaactttcatttttgtgttggcaatgttgtgatgaaacagacattcccttgcattactactgggcatgc-aaatggcacaacctctatgggaagcaatttggcag-gatctattaagatgacatacacatatatcctttaagccatcaatttcatttctgaaaatttaatatacaaatatacccctcacgtgtgaaatg---------cat-gatattcaatgcagcatcatttgtagcaggaaatggactggaaacaaccaaatgtctatcaataatgaacttgat-aaatgctattattctatacatggcatatgacacagctgaaaacaaggaagaaactctcaacgtactgat--gaga--------tctttcatact-gttgaatgaaaaaggctaggtgcaaaaca--acacgaataacatgctatcttttgcaagaaaagggagacagtatgaatatac----atatttgtatatatacatacacacac------tttgagataatacatgagaaatgaattatgattaccgag---atttggacggatacgggaactgggtgaag
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52094288 779 -  59632846 ---------aaggaaagaaagaaagaaagaaa---------gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaattggaaccaaggctagaaatggttcacagaagaggaaaagcgaatgactcaa----ataaaaagatgctcaatctcactcataagaaaaatgcaaatcaaaactatactcatgtacca-tgttttacccatccaaatgccaaaaaatctcaagagtttta--------tttttgtgttggcaatgttgtaaggaaactg-cattctcctgcattacagccgggaatgcaaaatggcacaatctttatggaaaacaatttgacaattgtctattaaaattacaaatacctcttccttttgaaccaccaatttcatttctggaaatttaatgtacacatattctgttcatatgtgagatgatacttgaacataggtattcagggcagcattagttgtaatagcaaa-agaccggaaatgcccaaatgtccatcaataagagacttgataaaatgtgattcttctacatagggcacata--------tataagaaattataaactctc--tgtactgatgtgagagcatgatctcctagatattagcccattgaaaaaggcaaggtgtaaaaaatgacatgtataatctgataccttttgcatgaaaagggggg-aataagaatatacatttgtgtttccat--------acacacat------tttggaaagatagatggaaaattaatggtaattactgggagta-ttggatggatataggaactgaatgaag
i canFam3.chr16            I 356 I 200
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I
e macFas5.chr3             174731307   0 + 192294377 C
e rheMac3.chr3             180985544  15 + 198365852 I

a score=276508.000000
s hg38.chr7_GL383534v2_alt     47040 175 +    119183 atttttcactttatGTGAGTGGT--AGTCTGCCATActcttcttcctttagtaacagaaccttccaaattttagatggacacacggacgcccagctaaaggccacatttcccagattgccttgctac-tatgtgtgcctagtaaccaagaactggtcaatggaatgtgaacagaggtg
s panTro4.chr7             143146982 175 + 161824586 atttttcactgtatGTGAGTGGT--AGTCCGCCACActcttcttcctttagtaacagaaccttccaaattttagatggacacgtggacgcccagctaaaggccacatttcccagattcccttgctac-tatgtgtgcctagtaaccaagaactggtcaacggaatgtgagcagaggtg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138967888 175 + 157549271 ATTTTTCACTTTATGTGAGTGGT--AGTCTGCCACActcttcttcctttagtaatagaaccttccaaattttagatggacacatggacgcccagctgaaggccacatttcccagattcccttgctac-tatgtgtgcctagtaatcaagaactggtcaatggaatgtgagcagaggtg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93088328 175 + 110113093 atttttcactttatGTGAGTGGT--AGTCTGCCACActcttcttccttcagtaatagaaccttccaaattttagatggacacatggacacccagctaaaggccacatttcccagattcccttgctac-tatgtgtgcctagtaaccaagaactggtcaatggaatatgagcagaggtg
i nomLeu3.chr13            C 0 I 2765
s papAnu2.chr3             163400874 176 + 180432695 ATTTTTCACTTTATGTGAGTGGT--AGTCTGCCACACTCTTCTTCTTTTAGTAACAGAACCTTCCAAATTTTAGATGGACACATGGATGCCCAGCTAAAGGCCACATTTCCCAGATTCCCTTGCTACTTATGTGTGCCTAGTAACCAAGAACTGGTCAATGGAATGTGAGCAGAGGTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110429681 176 + 127223203 atttttcactttatGTGAGTGGT--AGTCTTCCACActcttcttcttttagtaacagaaccttccaaattttagatggatacatggatgcccagctaaaggccacatttcccagattcccttgctacttatgtgtgcctagtaaccaagaactggtcaatggaatgtgagcagaggtg
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52095267 173 -  59632846 acttttcattttatgccAGTGGTAGAGACTGccactctcttcttctctgagtaacagaactttct-gattgtttctcgtcacacagtcacctagttaaggaccacaactgccaga---ccttgctgc-ttggcatggctagtgacaaagaattggccaatggcatgtaagtagaagtg
i canFam3.chr16            I 200 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I
e macFas5.chr3             174731307   0 + 192294377 C
e rheMac3.chr3             180985544  15 + 198365852 I

a score=325725.000000
s hg38.chr7_GL383534v2_alt     47215 371 +    119183 gtgtgttcaacttccagatcact----------------caagttccagatcccagaagttgaacacagcacctctgctcacattccatggagccaa---------------------------------------------------------------------ggtctttccctcttcctacatgctagaaaatgacaatgtaatggggagacagcttctaccatgtggatgaggacaacaactctagaaaatgacataatgtaagactgaatgactcaggtccaagaatga-ccagtggaacagaaccacctacccacaatgaactactacgactgccatgctggaaaagctgtaattctatcttactgtgtcactgtattgggggtctcttcttcattatagcaacttagcctatactctaaAAGCCAaaaacgatacctggaaatgagtta
s panTro4.chr7             143147157 370 + 161824586 gtgtgttcaacttccagatccct----------------caagttcctgatcccagaagttgaacacaccacctctgctcacattccatggagccaa---------------------------------------------------------------------ggtctttccctcttcctacatgctagaaaatgacaatgtaatggggagacagcttctaccatgtggatgaggacaaca-ctctagaaaatgacataatgtaagactgaatgactcaggtccaagaatga-ccagtggaacagaaccacctacccacaatgaactactacgactgccatgctggaaaagctgtaattctatcttactgtgtcactgtattgggggtctcttcttcattacagcaacttagcctatactctaaAAGCCAaaaacgatacctggaaatgagtta
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138968063 409 + 157549271 gtgtgttcaacttccagATCCCT----------------CAAGTTCCAGATCCCGGAAGTTGAACAC------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCTCTTCCTACATGCTAGAAAATGACAATGTAATGGGGAGGCAGCTTCTACCATGTGGATgaggacaaca-ctctagaaaatgacataacgtaagactgaatgactcacgtccaagaatga-ccagtggaacagaaccacctacccacaatgaactactacgactgccatgctggaaaagctgtaattctatcttactgtgtcactgtattgggggtctcttcttcattacagcaacttagcctatactctaaAAGCCAaaaacgatacctggaaatgagtta
i ponAbe2.chr7             C 0 C 0
s papAnu2.chr3             163401050 385 + 180432695 GTGTGTTCAACTTCCAGATCCCGCAAGTTCCATATCCCAGAAGTTCCAGATCCCGGAAGTTGAACATACCACCTCTGCTCACATTCCTTGGAGCCAA---------------------------------------------------------------------GGTCTTTCCCTCTTCCTACAGGCTGGAAAACGACAATGTAATGGGGAGACAGCTTCTACCATGTGGAT-AAGACAACA-CTCTAGAAAATGACATAATGTAAGACTGAATGACTCGGGTCCAAGAatga-ccagtggaacagaaccaCCTACCCACAATGAACTACTACGACTGCCATGCTGGAAAAGCTATAATTCTATCTTACTGTGTTACAGTATTGGGGGTCTCTTCTTCATTATAGCAAGGTAGCCTATACTCTAAAAGCCAAAAACGATACCTGGAAATGAGTTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110429857 369 + 127223203 gtatgttcaacttccagatcccg----------------gaagttCCAGAtcccggaagttgaacataccacctctgctcacattccatggagccaA---------------------------------------------------------------------GGTCTTTCCCTCTTCCTATAGGCTGGAAAACGACAATGTAATGTGGAGACAGCTTCTACCATGTGGAT-AAGACAACA-CTCTAGAAAATGACATAATGTAAGACTGAATGACTCGGGTCCAAGAATGA-CCAGTGGAACAGAACCACCTACCCACAATGAACTACTACAACTGCCATGCTGGAAAAGCTATAATTCTATCTTACTGTGTCACAGTATTGGGGGTCTCTTCTTCATTATAGCAACGCAGCCTATACTCTAAAAGCCAaaaatgatacctggaaatgagtta
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52095440 286 -  59632846 atgtgtttaactt--------gg----------------ggtgttcct----------------------------------------------------------------------------------------------------------------------GTGTTTTTCCTCTTCCTGCAGGCCGGAACATGACCTGGTAATGGTGAGTCTGCTTCTACCATGAGGATGAGGACAATA-CTCTAGGAGATAGGAGCATATAA--------GACTCAGGTCCCAGGATGACCCAGCAGAACAGAGGCATCTA-CAGCACTGGACTGCTTCTCCAGTGA-----------CTGTGACTC-----CTCTGAGTCACTATATCTTGAGT---TTCTTTGTTGTAGCAACTTAGCCTGTACAGCCAAAGCAGAAGATGGTGCAGAGAAATGAGTTA
i canFam3.chr16            C 0 I 136
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I
e macFas5.chr3             174731307   0 + 192294377 C
e rheMac3.chr3             180985544  15 + 198365852 I
e nomLeu3.chr13             93088503 2765 + 110113093 I

a score=10370.000000
s hg38.chr7_GL383534v2_alt     47586 11 +    119183 ctacagtatca
s panTro4.chr7             143147527 11 + 161824586 ctacagtatca
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138968472 11 + 157549271 ctacagtatca
i ponAbe2.chr7             C 0 C 0
s papAnu2.chr3             163401435 11 + 180432695 CTACAGTATCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110430226 11 + 127223203 ctacagtatca
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52095726 136 -  59632846 I
e calJac3.chr8              23777477 2032 - 128169293 I
e macFas5.chr3             174731307  0 + 192294377 C
e rheMac3.chr3             180985544 15 + 198365852 I
e nomLeu3.chr13             93088503 2765 + 110113093 I

a score=782125.000000
s hg38.chr7_GL383534v2_alt     47597 738 +    119183 aaaaccatatagaga------------------------cactggctttgttgctggaaggggagggtggtgagaaaatagatattgcagactagaaagctggcaacccttgttacacttgtagcaaaacatctgctaaaacttcaataacttgggaga----ccctgtgtcatctgaatttgtagcttt-atgggaagcagttggcagtagaatgctggtgtgtgttgactgccccttgtatgcttttagtgagctactgtaagaataagataaaaacaaacaagaactggctggtttgcaaggaaaaacggaataaaatacagcctactaagggtcatgtgttctaaatttggcaatataaatccactgagattccaacaattt-gggaccccacagggctggaaaagccaa-tgctactgtacaccaaaagcaggagacaggagtctctctcagggcatctatgaaagtctccagtttagtattcttgggcagacaagggagtcagcttatttacaaagatcagatttagggaatcacctcaaggaagttattatgaaaatgagggagaaagggatgggccaaaaagagaggccagtaactataatctagtctgctaa-ttaaaaacaatgacccaaagaagatctttggccatggata-ttttacctggaactgactggaagcaaacaaacgagaagtcaatttagtttttgagagacatgtattgtcacatgcttggcttataaaagcctgtgacttcttgacccc
s panTro4.chr7             143147538 738 + 161824586 aaaaccatatagaga------------------------cactggctttgttgctggaaggggagggtggtgagaaaatagatattgcagactagaaagctggcaacccttgttacacttgtagcaaaacatctgctaaaacttcaataacttgggaga----ccctgtgtcatctgaatttgtagcttt-atgggaagcagttggaagtagaatgctggtgtgtgttgactgccccttgtatgcttttagtgagctactataagaataagataaaaacaaacaagaactggctggtttgcaaggaaaaacggaataaaatacagcctactaagggtcatgtgttcgaaacttggcaatataaatccactgagattccaacaattt-gggaccccacagggctggaaaagccaa-tgctactgtacaccaaaagcaggagacaggagtctctctcagggcatctatgaaagtctccagtttagtattcttgggcagacaagggagtcagcttatttacgaagatcagatttagggaatcacctcaaggaagttattatgaaaatgagggagaaagggatgggccaaaaagagaggccagtaactataatctagtctgctaa-ttaaaaacaatgacccaaagaagatctttggccatggata-ttttacctggaactgactggaagcaaacaaaccagaagtcaatttagtttttgagagacatgtattgtcacatgcttggcttataaaagcctgtgacttcttgacccc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138968483 739 + 157549271 aaaaccatatagaga------------------------cactggctttgttgctggaagggcagggtggtgagaaaatagatattgcagacgagaaagctggcaacccttgttacacttgtagcaaaacaactgctaaaacttcaataacttgggaga----ccctgtgtcatctgaatttgtagcttt-atgggaagcagttggaaatagaatgctggtgtgtgttgactgccccttgtatgcttttagtgagctactataagaataagataaaaacaaacaagaactggctggtttgcaaggaaaaatggaataaaatacagcctactaagggtcatgtgttctaaatttggcaatataaatccattgagattccaacaattt-gggaccccacagggctagaaaagccaa-tgctactgtaccccaaaagcaggagacaggagtctctctcagggcatctatgaaagtctccagtttattattcttgggcagacaagggagttagcttatttacaaagatcacatttagggaatcacctcaaggaagtcattatgaaaatgagggagaaagggatgggccaaaaagagaagccagtaactataatctagtctgctaa-ttaaaaaccatgacccaaagaagatctttggccatggatacttttacctggaactgactggaagcaaacaaaccagaagtcaatttagttttggggggacatgtattgtcacatgcttggcttataaaagcctgtgacttcttgacccc
i ponAbe2.chr7             C 0 C 0
s papAnu2.chr3             163401446 732 + 180432695 AAACCCATATTGAGA------------------------CACTGGCTTTGTTGCTGGAAGGGGAGGGTGGTGAGAAAATAGATACTGTAGACTAGAAAGCTGGCAACCCTTGTTACACTTGTAGCAAAACATCTGCTAAAACTTCAATAACCT--GAGA----CCCTGTGACCTCTGAATTTGTAGCTTTAAGGGGAAGCAGTTGGAAATAGAATGCAAGTGTGTGCTGACTGCCCCTTATATGCTTTTAGTGAGCTATTACAAGAGTAAGATAAAAACAGGGAAGAACTGGCTGGTTTGCAAGGAAAAACGGAATAAAATACAGCCTACTAAGGGTCATGTGTTTTAAATTTGGCAATATAAATCCATTGAGATTTCAACAATTT-GGGACCCCATAGGGCTGGAAAAGTCAA-TGCTACTGTACCCCAAAAGCAGGAGACAGGAGTCTCTCTCAGGGCATCTATGAACGTCTGCAGTTTAGTATTCTTGGGCACACAAGGGAGTCAGCTTATTTACAAAGATCAGATTTAGGGAATCACCTCAAGGAAGTCATTATGAAAATGAGGGAGAAAGGGATCGGCCAAAAAGAGAGGCCAGTAACTATAATTCAGTCTGCTAA-TTAAAATCCATGACCCAAAGAAGATCTTTGGCCATGGATA--GTTACCTGGAACTGACTGGAAG----CAAACCAGAAGTCAATTTAGTTTTTGAGGGACATGTATTGTCACATGCTTGGCTTATAAAAGCCTATGACTTCTTGACCCC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110430237 728 + 127223203 aaaaccatattgaga------------------------cactggctttgttgctggaaggggagggtggtgagaaaatagatactgcagactagaaagctggcaacccttgttacacttgtagcaaaacatctgctaaaacttcaataactt--gaga----ccctgtgtcctctgaatttgtagctttaaggggaagcagttggaaatagaa------tgtgtgctgactgccccttatatgcttttagtgagctactacaagagtaagataaaaacaaggaagaactggctggtttgcaaggaaaaacggaataaaatacagCCTACTAAGGGTCATGTGTTCTAAATTTGGCAATATAAATCCATTgagatttcaacaattt-gggaccccatagggctggaaaagtcca-tgctactgtaccccaaaagcaggagacaggagtctctctcagggcatctatgaacgtctgcaatttagtattcttgggcagacaagggagtcagcttatttacaaagatcagatttagggaatcaccttaaggaagtcattatgaaaatgagggagaaagggatcggccaaaacgagaggccagtaactataattcagtctgctaa-ttaaaatccatgacccaaagaagatctttggccatggatactgttacctggaactgactggaag----caaaccagaagtcaatttagtttttgagggacatgtattgtcacatgcttggcttataaaagcctatgacttcttgacccc
i chlSab2.chr21            C 0 I 6
s canFam3.chr16             52095862 725 -  59632846 aaaatcttaaaaagaaaAaaaaagacaagacactgtggcctttggcttagcatctggcaagggacagtggtgagagaagaggcgttacagaccagaaagctggtagcccttgttacacttctg--caaacacttgctagaacttcagtaccttggaagataggtcctgtgtcacctgaacttgtaacttc-agggggggcacatagaagtagaa----------tgttgactgctgcttat----tttcagtgacatcctaccagaaaaagatgaaaacagggaagagctggccagtccgcaagctgaaatggaaggaaatgcagcct----agggcagcgtgttctgagttctgcaatgtaattaaatggagactccagtggtttggggatcccatgggactggaaaagtcaactgcttttgtac-ccaaaagcaggaggtaagaatttctttcaaagcttctatgaaactctccagttaag---------------agtggagtca-catatttgcaaagatcagatttagggcacagccttgaggcagctgccattaaaatgaggaaaagacggataggccaagaacagacaccagtaactattctgtaatccactgatttaaaaactaagaccccaaaggaatctttggcagtgga-a-------ctggaaccgattggaagcaaacagaccagaagcctagttagttttagagggatctatattgtcacgcgcctagtctataaaagtctgtgacttctcaaccct
i canFam3.chr16            I 136 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I
e macFas5.chr3             174731307   0 + 192294377 C
e rheMac3.chr3             180985544  15 + 198365852 I
e nomLeu3.chr13             93088503 2765 + 110113093 I

a score=8875.000000
s hg38.chr7_GL383534v2_alt     48335 24 +    119183 ttaagaaaccactagacctccaaa
s panTro4.chr7             143148276 24 + 161824586 ttaagaaaccactagacctccaaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138969222 24 + 157549271 ttaagaaaccactagacctccaaa
i ponAbe2.chr7             C 0 C 0
s papAnu2.chr3             163402178  4 + 180432695 ----AAAA----------------
i papAnu2.chr3             C 0 C 0
s canFam3.chr16             52096587 24 -  59632846 taaagaaaccactacacccccaaa
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I
e chlSab2.chr21            110430965  6 + 127223203 I
e macFas5.chr3             174731307  0 + 192294377 C
e rheMac3.chr3             180985544 15 + 198365852 I
e nomLeu3.chr13             93088503 2765 + 110113093 I

a score=57790.000000
s hg38.chr7_GL383534v2_alt     48359 46 +    119183 tctataccagcaggaaaggtgttctaaagctgtacagcctcaagaa
s panTro4.chr7             143148300 46 + 161824586 tctataccagcaggaaaggtgttctaaagctgtacagcctcaagaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138969246 46 + 157549271 tctataccagcaggaaaggtgttctaaagctgtacagcctcaagaa
i ponAbe2.chr7             C 0 C 0
s papAnu2.chr3             163402182 46 + 180432695 TCTATACCAGCAGGAAAGGTGTTCTAAAGCTGTACAGCCTCAAGAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110430971 46 + 127223203 tatataccagcaggaaaggtgttctaaagctgtacagcctcaagaa
i chlSab2.chr21            I 6 C 0
s canFam3.chr16             52096611 46 -  59632846 cctacaccagcaggaaatgtgttctccagcgatgcagcctcaagaa
i canFam3.chr16            C 0 I 106
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I
e macFas5.chr3             174731307  0 + 192294377 C
e rheMac3.chr3             180985544 15 + 198365852 I
e nomLeu3.chr13             93088503 2765 + 110113093 I

a score=277040.000000
s hg38.chr7_GL383534v2_alt     48405 262 +    119183 --------------------------------------------------------------------aggcatgttctccaatgcccactgtagatgtggttatggaggaaaatgaagaaagaatcttctagaagacaaagccaagtgccatggaggacaatggacaa-gggattctacacaacagaacca-aagttgagccaagagcatact------------------gactctgcaattcttgctcagcagaatttcactgttgttatgaactagtgaccatccgtatttctcattcttcc-cttttccaaacagaagcttgtattgtggttcctactttacctcc
s panTro4.chr7             143148346 262 + 161824586 --------------------------------------------------------------------aggcatgttctccaatgcccactgtagatgtggttatggaggaaaatgaagaaagaatcttctagaagacaaagccaagtgccatggaggacaatggacaa-gggattctacacaacagaacca-aagttgagccaagagcatact------------------gactctgcaattcctgctcagcagaatttcactgttgttatgaaccagtgaccatccgtatttctcattcttcc-cttttccaaacagaagcttgtattgtggttcctactttacctcc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138969292 262 + 157549271 --------------------------------------------------------------------aggcatgttctccaatgcccactgtagatgtggttatggaggaaaatgaagaaagaatcttctagaagacaaagccaagtgccatggaggaaaatgaacaa-gggattctacacaacagaacca-aagttgagccaagagcacact------------------gactctgcaattcctgctcagcagaattttactgttgttatgaactagtgaccacccgtatttctcattcttcc-cttttccaaacagaagcttgtattgtggttcctcctttacctcc
i ponAbe2.chr7             C 0 C 0
s papAnu2.chr3             163402228 262 + 180432695 --------------------------------------------------------------------GGGCAGGTTCTCCAATGCCCACTGCAGATGTGGTTatggaggaaaatgaagaaagaatctTCTAGAAGACAAAGCCAAGTACCATGGAGGAAAATGGACAG-GGGGTTCTACACAACAGAACCA-AAGTTGAACCAACAGCATACT------------------GACTCTGCAATTCCTGCTCAGCAGAATTTCACTGTTGTTATGAACTAGTGACCATCCATATTTctcattcttcc-cttttccaaaCAGGAGTTTGTATGGTGGTTCCTACTTCACCTCC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110431017 262 + 127223203 --------------------------------------------------------------------gggcatgttctccaatgcccactgcagatgaggttatggaggaaaatgaagaaagaatcttctagaagacaaagccaagtatcatggaggaaaatggacag-gggattctacacaacagaacca-aagttgaaccaacagcatact------------------gactctgcaattcctgctcagcagaatttcactgttgttatgaactagtgaccatccgtatttctcattcttcc-cttttccaaacaggagtttgtatggtggttcctacttcacctcc
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52096763 351 -  59632846 agggagcctgcttctccctctgcctgtgtctctcatgaataaataaataaaatccttttttaaaaagagatcatgttctccagtgtctgctttggaagtggttatgatggaaaatggacaaagaacctcctcgagggcaaagtcaggagcggtgaaggaaaacgggcaaggggattgtcaataatagaaccacgctttcaataaggaacacactgctctgccaggacaagaagcctccgcagtccctgctcaacagaatttcatcatcattagagactaatggctgtttgggtttctcacccttcctcttttccaaacaggagtttgcactgtggttcttattccACCttt
i canFam3.chr16            I 106 I 278
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I
e macFas5.chr3             174731307   0 + 192294377 C
e rheMac3.chr3             180985544  15 + 198365852 I
e nomLeu3.chr13             93088503 2765 + 110113093 I

a score=207389.000000
s hg38.chr7_GL383534v2_alt     48667 184 +    119183 tatattgcatttgggaggtagggagtagagggacttgtctattcttttataagttttcagggtaagaagaaccatgccctggcctaacgtaaaggactactgcgcactacagagaaatcctagattttagactggaagcatgaactgaatgagactctgtgatgtctcctttggggtgggagga
s panTro4.chr7             143148608 184 + 161824586 tacattgcatttgggaggtagggagtagagggacttgtctattcttttataagttttcagggtaagaagaaccatgccctggcctaacgtaaaggactactgcgcactacagagaaatcctagattttagactggaagcatgaactgaatgagactccgtgatgtctcctttggggtgggagga
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138969554 182 + 157549271 tatattgcatttgggaggtagggagtagagggacttgtctattcttttataagttttcagggtaaaaagaaccatgccctggcctaacataaaggactactgcacactacagagaaatcctagattttagactggaagcatgaactgaatgagact--atgatgtctcctttggggtgggagga
i ponAbe2.chr7             C 0 C 0
s papAnu2.chr3             163402490 184 + 180432695 TTTATTGCATTTGGGAGGTAGGGAGTAGAGGGACTTGTCTATTCTTTCATAAGTTTTCAGGGTAAGAAGAACCATGCCCTGGCCTAATGTAAAGAACTACTGCACACCACAGAGAAATCCTAGATTTTAGACTGGGAGCATGAACTGAATGAGACTCTATGACGTCTCCTTTGGGGTGGGAGGA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110431279 184 + 127223203 tttattgcatttgggaggtagggagtagagggacttgtctattctttcataagttttcagggtaagaagaaccatgccctggcctaatgtaaagaactactgcacaccacagagaaatcctagattttagactgggagcatgaactgaatgagactctatgacgtctcctttggggtgagagga
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52097392 180 -  59632846 tatattgtgtttggaaggtgcggagtgaatggatttgtctattgtttcgtaggattttaggatacgaagaaccatgtgttgatctgatgaaaggacct----tgcatcacccagaaatcctggattttagactagaagcattaaatggatgagcctctatgaggtttctcttggggtgagcagg
i canFam3.chr16            I 278 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I
e macFas5.chr3             174731307   0 + 192294377 C
e rheMac3.chr3             180985544  15 + 198365852 I
e nomLeu3.chr13             93088503 2765 + 110113093 I

a score=1223122.000000
s hg38.chr7_GL383534v2_alt     48851 595 +    119183 atggcctctacaagggggaagaag------agtatacatggatacctgagtggccagaggggcaaacTGAAgcagaagctgctaacttt-ttctcaaagtcaagtcttcccttcttcctgtttgtaaccaatgccccagagttct-aactggtcacagggtcacccacctagt--agtga-------tgcttcccaggctactttgctgttgggtgtgtctctgtgattgaggacttgacaatggaatat------------------gagaagtgagatatgtaaattc-tagtctttccttcttccctatgggctgaaatgcaaacataatagtagtgagcagcttttaacatttgggaaagagcaccttacaatacaaa-accattcttaggatacggtggaataa--caagagatgaa-tgtgggtccctgaacaattgtatggaacagagcaggctacccaacttgaccacctgcctacctctacgctatgacatgagcaataatcttttatcgtaatccggccatagtaattttgggcctctgttcttgccttttagccaggaccctatccaatataatacCACCTTAAAATTTTTGGATTTTGAACCATGAAACTGTATTGCCTACTT
s panTro4.chr7             143148792 593 + 161824586 atggcctctacaagggggaagaag------agtatacacggatacctgagtggccagaggggcaaacTGAAgcagaagctgctaacttt-ttctcaaggtcaagtcttcccttcttcctgtttgtaaccagtgccccagagttct-aactggtcacaggatcacccacctagt--agtga-------tgcttcccagtctactttgctgttgggtgtgtctctgtgattgaggacttgacaatggaatat------------------gagaagtgagatatgtaaattc-tagtctttccttcttccctatgggctgaaatgcaaacataatagtagtgagcagcttttaacatttgggaaagagcaccttacaatacaaa-accactc--aggatatggtggaataa--caagagatgaa-tgtgggtccctgaacaattgtatggaacagagcaggctacccaacttgaccccctgcctacctctacgctatgacatgagcaataatcttttatcgtaatccggccatagtaattttgggcctctgttcttgccttttagccaggaccctatccaatataatacCACCTTAAAATTTTTGGATTTTGAACCATGAAACTGTATTGCCTACTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138969736 601 + 157549271 atggcctctacaagtgggaagaag------agtatacatggatacctgagtggccagaggggcaaacTGAAgcagaagctgctaacttt-ttctcaaagtcaagtattcccttcttcctgtttgtaaccaatgccccagagttct-aaccggtcacagggtcacccacctagtaaagtaa---acactgcttcccagtctactttgctgttgggtgtgtctctgtgattgaggacttgacaatggaatat------------------gagaagtgagatatgtaaattc-tagtgtttccttcttccctatgggctgaaatgcaaacataatagtagtgagcagcttttaacatttgggaaagagcacctcacaatacaaa-accattcttaggatatggtggaataa--caagagatgaa-tgtgggtccctgaaaaattgtatggaacagagcaggctacccaacttgaccgcctgcctacctctacgctatgacacgagcaataatcttttatcttaatcgggccacagtaattttgggcctctgttcttgccttttagccaggaccctatctaatataATACCACCTTAACATTTTTGGATTTTGAACCATGAAACTGTATTGCCTACTT
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             180985559 612 + 198365852 ATGGCCTTTACAAgtgggaagaag------agtacacatggatacctgagtggccagaggggcaaactgaggcagaagctgttgacttt-ttctcaaagtcaagccttcccttcttcctgtctgtaaccaatgccccagagttct-aactggtcacagggtcacccacctagt--agtga-------tgcttcccagtctgctttgctgttgggtgtgtctctgtgattgagaacttgacaatggaatatgagaagtgagataggtaagagaagtgagatatgtaaattc-tagtctttccctcttccctatgagctgaaatgcaaacataatagcagtgagcagctttcaacatttgggaaagagcaccttgcaatacaaa-accattcttaggatatggtagactaa--caagagatgaa-tatgggtccctgaacaattgtatggaacacagcaggctacctaacttgaccacctgcctacctctatgctatgacatgagcaataatcttttatcttaattgggccatagtaattttgggcctctgttcttg-cttttagccaggaccctaactaatataATAACACCTTAAAATttttggattttgaaccatgagactgtgttgcctactt
i rheMac3.chr3             I 15 C 0
s macFas5.chr3             174731307 612 + 192294377 ATGGCCTTTACAAgtgggaagaag------agtacacatggatacctgagtggccagaggggcaaactgaggcagaagctgttgacttt-ttctcaaagtcaagccttcccttcttcctgtctgtaaccaatgccccagagttct-aactggtcacagggtcacccacctagt--agtga-------tgcttcccagtctgctttgctgttgggtgtgtctctgtgattgagaacttgacaatggaatatgagaagtgagataggtaagagaagtgagatatgtaaattc-tagtctttccctcttccctatgagctgaaatgcaaacataatagcagtgagcagctttcaacatttgggaaagagcaccttgcaatacaaa-accattcttaggatatggcagactaa--caagagatgaa-tatgggtccctgaacaattgtatggaacacagcaggctacctaacttgaccacctgcctacctctatgctatgacatgagcaataatcttttatcttaattgggccatagtaattttgggcctctgttcttg-cttttagccaggaccctaactaatataATAACACCTTAAAATttttggattttgaaccatgagactgtgttgcctactt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163402674 588 + 180432695 ATGGCCTTTACAAGTGGGAAGAAG------AGTACACATGGATACCTGAGTGGCCAGAGGGGCAAACTGAGGCAGAAGCTGTTGAC----TTCTCAAAGTCAAGCCTTCCCTTCTTCCTGTCTGTAACCAATGCCCCAGAGTTCT-AACTGGTCACAGGGTCACCCACCTAGT--AGTGA-------TGCTTCCCAGTCTGCTTTGCTGTTGGGTGTGTCTCTGTGATTGAGAACTTGACAATGGAATAT------------------GAGAAGTGAGATATGTAAATTC-TAGTCTTTCCCTCTTCCCTATGAGCTGAAATGCAAACATAATAGCAGTGAGCAGCTTTCAACATTTGGGAAAAAGCACCTTGTAATACAAA-ACCATTCTTAGGATATGGTAG---AA--CAAGAGATGAA-TATGGGTCCCTGAACAATTGTATGGAACAGAGCAGGCTACCTAACTTGACCACCTGCTTACCTCTATGCTATGACATGAGCAATAATCTTTTATCTTAATCGGGCCATAGTAATTTTGGACCTCTGTTCTTG-CTTTTAGCCAGGACCCTAACTAATATAATAACACCTTAAAATTTTTGGATTTTGAACCATGAGACTGTGTTGCTTACTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110431463 590 + 127223203 atggcctttacaagtgggaagaag------agtacacatgtatacctgagtggccagaggggcaaactgaggcagaagctgttgac----ttctcaaagtcaagccttccc-tcttcctgtctgtaaccaatgccccagagttct-aactggtcacagggtcacccacctagt--agtga-------tgcttcccagtctgctttgctgttgggtgtgtctctgtgattgagaacttgacaatggaatat------------------gagaagtgagatatgcaaattc-tagtctttccctcttccctatgagctgaaatgcaaacataatagcagtgagcagctttcaacatttgggaaagggcaccttgcaatacaaa-accattcttaggatatggtagaataa--caagagatgaa-tatgggtccctgaacaattgtatggaacagagcaggctacctaacttgaccacctgcttacctctatgctatgacatgagcaataatcttttaccttaattgggccatagtaattttgggcctctgttcttg-cttttagccaggaccctaactaatataATAACACCTTAAAATttttggattttgaaccatgagactgtgttgcctactt
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52097572 590 -  59632846 atgtcctttacatgtgggaggaagaggaaaagtgcacatagatatctgactagtgagaggggcaATTTGACgctggggctgctaattttgcccccaaatccatctgtcccctttttcctgtttgcaacagaaccaccagatttttcaactgagtacagggtcgctgacctaga--gactacctcctccatcctccagtctccttggctgttaggtgtgtctttgtgatggagaacttgacaatagcatac------------------gagaagtgatg-acgcaatttcACAGGCTTTCTCTCCTCCCTCTGGGCT-AGATGTAAAC-----AGTGGTCAACAGCTCTGAACA-CTGGAGAAGAATATCTTAGAACACAAACATCACTcttagggtatggtagattgatccaagagaagaagtgagggtccctaaacactcgtagggaac--agcagg--------------cacctgcc-accaccagaccattacatgagaaagaatcttctgtttcctttgaaccattgtattttggggcctctgttactgccagttaggtaggactctaactaataGAATACCACCTTAAAATTTTTAACATTTGAGCCACAAGAAAATATCATCTGCTT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I
e nomLeu3.chr13             93088503 2765 + 110113093 I

a score=806209.000000
s hg38.chr7_GL383534v2_alt     49446 307 +    119183 -GGAGAATTAGCTTTTT-AAAAGGAATAATATTGTTTTAA-AAGTGTCAAAATCCCAATAAAATGGTCTTTTT------TAGAACTTCATAATATTACTTCTGAGACAAAAAAAAAAAAAACTGAGGAAATATTTTGAGTACAGAAAAAGACATATGTGCAAATGTATTTTCCACAGCTCCAAAAGGTAGAGGAGCAGCT----AAAAAAATAAACAGTAAATAGAAACATGCTGCATGTTCAGCCACAGAGAATAACCAAGTAAATGTATAGGACAGCTCCAGCATTGAAGAGCTATTAAAATAAGCATCAAAATGACA
s panTro4.chr7             143149385 306 + 161824586 -GGAGAATTAGCTTTTT-AAAAGGAATAATATTGTTTTAA-AAGTGTCAAAATCCCAATAAAATGGTCTTTTT------TAGAACTTCATAATATTACTTCTGAGACCAAAAAAAAAAAAAA-GAGGAAATATTTTGAGTACACAAAAAGACATATGTGCAAATGTATTTTCCACAGCTCCAAAAGGTAGAGGAGCAGCT----AAAAAAATAAACAGTAAATAGAAACATGCTGCATGTTCAGCCACAGAGAATAACCAAGTAAATGTATAGGACAGCTCCAGCATTGAAGAGCTATTAAAATAATCATCAAAATGACA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138970337 305 + 157549271 -GGAAAATTAGCTTTTT-AAAAGGAATAATATTGTTTTAA-AAATGTCAAAATCCCAATAAAATGGTCTTTTT------TAGAACTTCATAATATTACTTCTGGGAT--AAAAAAAAAAAACTGAGGAAATATTTTGAGTACAGAAAAAGATATATGTGCAAATGTATTTTCCACAGCTCCAAGAGGTAGAGGAGCAGCT----AAAAAAATAAACAGTAAATAGAAACATGCTGCATGTTCAGCCACagagaataaccaagtaaatatatgggacagctccagcaatgaagagctattaaaataatcatcaaaatgaca
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93091268 302 + 110113093 -GGAAAATTTGCTTTTT-AAAACGAATAATATTGTTTTAA-AAGTGTCAAAATCCCAATAAAATGGTCTTTTT------TAGAACTTCATAATATTACTTCTGAGAC-----AAAAAAAAACTGAGGAAATATTTTGAGTACAGAAAAAGATATATGTGCAAATGTATTTTCCACAGCTCCAAAAGGTAGAGGAGCAGCT----AAAAAAATAAACAGTAAACAGAAACATGCTGCATATTCAGCCACAGAGAATAACCAAGTAAATGTATGGGACAGCTCCAGCAATGAAGCGCTATTAAAATAATCAtcgaaataaca
i nomLeu3.chr13            I 2765 C 0
s rheMac3.chr3             180986171 303 + 198365852 -ggaaaatTAGCTTTTT-AAAAGGAATAATATTGTTTTAA-AAGTGTCAAAATCCCAATAAAATGGTCTTTTT------TAGAACTTC---ATATTACTTCTGAAAC-AAAAAAGAAAAAACTGAGGAAATATTTTGAATACAGAAAAAAATATATGTGCAAATGTATTTTCCACAGCTCCAAAAGGTAGAGGAGCAGCT---AAAAAAAATAAACAGTTAATAGAAACATGCTGCATGTTCAGCCACAGAGAATAACCAA-TAAATGTATGGGACAGCTCCAGCAATAAAGAGCTATTAAAATAATCATCAAAATGACA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174731919 306 + 192294377 -ggaaaatTAGCTTTTT-AAAAGGAATAATATTGTTTTAA-AAGTGTCAAAATCCCAATAAAATGGTCTTTTT------TAGAACTTCATAATATTACTTCTGAAAC-AAAAAAGAAAAAACTGAGGAAATATTTTGAATACAGAAAAAAATATATGTGCAAATGTACTTTCCACAGCTCCAAAAGGTAGAGGAGCAGCT---AAAAAAAATAAACAGTTAATAGAAACATGCTGCATGTTCAGCCACAGAGAATAACCAA-TAAATGTATGGGACAGCTCCAGCAATAAAGAGCTATTAAAATAATCATCAAAATGACA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163403262 306 + 180432695 -GGACAATTAGCTTTTT-AAAAGGAATgatattgttttaa-aagtgtcAAAATCCCAATAAAATGGTCTTTTT------TAAAACCTCATAATATTACTTctgagac-aaaaaagaaaaaactgaggaaatattttgaatacaGAAAAAGATATATGTGCAAATGTATTTTCCACAGCTCCAAAAGGTAGAGGAGcagct---aaaaaaaataaacagttaataGAAACATGCCGCATGTTCAGCCACAGAGAATAACCAA-TAAATGTATGGGACAGCTCCAGCAATAAAGAGCTATTAAAATAATCATCGAAATGACA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110432053 303 + 127223203 -ggaaaatTAGCTTTTT-AAAAGGAATAATATTGTTTTAA-AAGTGTCAAAATCCCAATAAAATGGTCTTTTT------TAGAACTTC---ATATTACTTCTGAGAC-ACAAAAGAAAAAACTGAGGAAATATTTTGAATACAGAAAAAGATATAAGTGCAAATGTATTTTCCACAGCTCCAAAAGGTAGAGGAGCAGCT---AAAAAAAATAAACAATTAATAGAAACATGCTGCATGTTCAGCCACAGAGAATAACCAA-TAAATGTATGGGACAGCTCCAGCAATAAAGAGCTATTAAAATAATCATCGAAATGACA
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52098162 310 -  59632846 GGGAAAACTGGTTTTTTCAAAAGggacagtaattttttaagaagtgtcagcctcccca-aaaatgtttttttttttttcttaaactccataatattacttcggagac--------ccatcactgaggaaatatttcaaaaacagaaaaagagatctacatgaaggggttcaccacagTTCCAAAATATAAAGGAGCAATTaaaaaaaaaaaaaaaaaagaagaagaaGCATG-TAAGTGCTCAACCATCGGGACCAATCAGGAAAACTTATGGGACGACTCTAACATTACAGAGTTATTAAAATAATCATCAAAATGATA
i canFam3.chr16            C 0 I 3
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I

a score=14449.000000
s hg38.chr7_GL383534v2_alt     49753 7 +    119183 AACAGGG
s panTro4.chr7             143149691 7 + 161824586 AACAGGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138970642 7 + 157549271 aacaggg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93091570 7 + 110113093 aacagga
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180986474 7 + 198365852 AACATGG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174732225 7 + 192294377 AACATGG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163403568 7 + 180432695 AACATGG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110432356 7 + 127223203 AACATGG
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52098472 3 -  59632846 I
e calJac3.chr8              23777477 2032 - 128169293 I

a score=404968.000000
s hg38.chr7_GL383534v2_alt     49760 153 +    119183 AAGACAATGGGAGAAAAACATATGCATCAT--GGGTATTCCTGGAGAAGAAAAAAACAGAATGCAAAAGTTAAATATTTTATTAAAGAAGAAAAAGTTCCTAAAATTAAAAATAAAAGAACTATCTATTGAGCAAAGGGGACAAACTATCCCAGA
s panTro4.chr7             143149698 153 + 161824586 AAGACAATGGGGGAAAAACATATGCATCAT--GGGTATTCCTGGAGAAGAAAAAAACAGAATGCAAAAGTTAAATATTTTATTAAAGAAGAAAAAGTTCCTAAAATTAAAAATAAAAGAACTGTCTATTGAGCAAAGGGGACAAACTATCCCAGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138970649 153 + 157549271 aagacaatggggggaaaacgtatgcataat--ggatattcctggagaagaaaaaaacagaatgcaaaagttaaatattttattaaagaagaaaaagttcctaaaattaaaaataaaagacctatctaTTGAGCAAAGGGGACAAAGAATCCCAGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93091577 153 + 110113093 aagacaatggggggaaaacatatgcataat--gggtattcctggagaagaaaaaaacagaatgcaaaagttaaatattgtattacagaagaaaagtttcctaaaattaaaaataaaagacctatctaTTGAGCAAAGGGGACAAACTATCCCACA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180986481 153 + 198365852 AAGACAATGGGGAGAAAATATATGCATGAC--AGGCATTCCTGGAGAAGGAAAAACCAGAACGCAAAAGTTAAATATTTTATTACAGAAGAAAAAGTTCCTAAAGTTAAAAACAAAAGACCTATCTATTGAGCAAAGGGGACAAACTATCCCAGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174732232 153 + 192294377 AAGACAATGGGGAGAAAATATATGCATGAC--AGGCATTCCTGGAGAAGGAAAAACCAGAACGCAAAAGTTAAATATTTTATTACAGAAGAAAAAGTTCCTAAAGTTAAAAACAAAAGACCTATCTATTGAGCAAAGGGGACAAACTATCCCAGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163403575 153 + 180432695 AAGACAATGGGGAGCAAATATATGCATGAC--AGGCATTCCTGGAGAAGGAAAAACCAGAACgcaaaagttaaatattttgttacagaagaaaaagttcctaaagttaaaaacaaaagaccTATCTATTGAGCAAAGGGGACAAACTATCCCAGA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110432363 153 + 127223203 AAGACAATGAGGAGAAAATATATGCATGAC--AGGCATTCCTAGAGAAGGAAAAACAAGAACGCAAAAGTTAAATATTTTATTACAGAAGAAAAAGTTCCTAAAATTAAAAATAAAAGACCTATCTATTGAGCAAAGGGGACAAACTATCCCAGA
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52098475 155 -  59632846 AGGATGAGGCAGAGAAAACACATGCATAACCAGCGCATAAAAGGAGGGGGGGAAAATGGATTGGAAAAGTTGAGTATTTTTTTACATGTGGAAAGGTTCCTGAAATTAAAAACAAAAGACGTATCTCTAGATCAAAAGGGACAAACGATCCCTGG
i canFam3.chr16            I 3 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I

a score=714092.000000
s hg38.chr7_GL383534v2_alt     49913 325 +    119183 ACATACTGATATGAACTAATAAATATTTGGCAAGTTCAggccaggctcagtggctcatgccggtaatcccagaactctgggaggccgaggtgggcagatcacgaggtcaggagttcgagactagcctgaccaacatggtgaaaccccgtctctacta-aaaaaaaataaataaattagccggctgtggtggcgggcccctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccaagatcacaccactgccctccagcctgggcgacagagtgagactcc--atctcaac
s panTro4.chr7             143149851 324 + 161824586 ACATACTGATATGAACTAATAAATATTTGGCAAGTTCAggccaggctcagtggctcatgccggtaatcccagaactctgggaggccgaggtgggcagatcacgaggtcaggagttcgagactagcctgaccaacatggtgaaaccccgtctctacta-aaaaaaa-taaataaattagccggctgtggtggcgggcccctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccaagatcacaccactgccctccagcctgggcgacagagtgagactcc--atctcaac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138970802 325 + 157549271 ACATACTGATACGAACTAATAAACATTTGGCAAGTTCAggctgggcgcagtggctcatgcctgtaatcccagaactctgggaggccgaggcgggcagatcacgaggtcaggagttcaagactagcctgaccaacatggtgaaaccccgtctttacta-aaaaaaaaataataaattagctggctgtggtggcgggcccctgtaatcccagctactcaggaggttgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccaagatcacaccactgccctccagcctgggcgacagagtgagactcc--atctcaaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93091730 303 + 110113093 AC----------------------ATTTGGCAAGTTCAggccaggcgcagtggctcatgcctgtaatcccagaactctggggggtcaaggcgggcagatcatgaggtcaggagtttaagactagcctgatcaacatggtgaaaccctgtctttacta-aaaaagtaataataaattagccgggcgtggtggtgggcccctgtaatcccagctactcaggagtctgaggcaggagaattgcttgaacccaagaggcagaggttgcagtgagccaagatcgcaccactgcactccagcctgggtgacagattgagactcc--atcccaaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180986634 326 + 198365852 ACATTCTGATATGAACTAATAAACATTTGGCAAGTTCAggccgggcgcagtggctcacacctgtaatcccagagctttgggaggccgaggtgggtggatcacgaggtcaggagttcgagatcagcctgatcaacatgatgaaatcccgtctctacttaaaaaaaaaaaaaaaaattagccaggcatggtggcggacccctgtaatcccagctactaagggggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaagatcacaccactgcactccagcctaggtgacagagcaagactcc--gtctcaaa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174732385 324 + 192294377 ACATTCTGATATGAACTAATAAACATTTGGCAAGTTCAggccgggcgcagtggctcacacctgtaatcccagagctttgggaggccgaggtgggtggatcacgaggtcaggagttcgagatcagcctgatcaacatgatgaaatcccgtctctactt--aaaaaaaaaaaaaaattagccaggcatggtggcggacccctgtaatcccagctactaagggggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaagatcacaccactgcactccagcctaggtgacagagcaagactcc--gtctcaaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163403728 325 + 180432695 ACATTCTGATATGAACTAATAAACATTTGGcaagttcaggccgggcgcagtggctcacacctgtaatcccagagctttgggaggccgaggtgggcggatcacgaggtcaggagttcgagatcagcctgatcaacatgatgaaatcccgtctctactt-aaaaaaaaaaaaaaaattagccaggcatggtggcggacccctgtaatcccagctactcagggggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaagatcacaccactgcactccagcc--agtgacagagcaagactctaagtttaaaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110432516 323 + 127223203 ACATTCTGATACGAACTAATAAACATTTGGCAAGTTCAggccaggcacggtggctcacacctgtaatcccagagctttgggaggctgaggcgggcggatcacgaggtcagcagtttgagatcagcctgatcaacatgatgaaatcccgtctctactt---aaaaaaaaaaaaaattagccaggcatggtggcgggcccctgtaatcccagctactcagtgggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaagatcacaccactgcactccagcccaggtgacagagcaagactcc--gtctcaaa
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52098630   0 -  59632846 C
e calJac3.chr8              23777477 2032 - 128169293 I

a score=47933.000000
s hg38.chr7_GL383534v2_alt     50238 31 +    119183 aaacaaaaacaacaacaacaaaacaaaACAA
s panTro4.chr7             143150175 26 + 161824586 aaacaaaaacaacaa-----aaacaaaacaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138971127 31 + 157549271 aaacaaaaacaacaaaaacaaaacaaaACAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93092033 26 + 110113093 aaacaaaagcaacaa-----aaacaaaacaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180986960 30 + 198365852 aaacaaaaacaaaaaca-aacaacaaaacaa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174732709 30 + 192294377 aaacaaaaacaaaaaca-aacaacaaaacaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163404053 31 + 180432695 aaaaaaaaaaaaaaacctaacaaagaAACAA
i papAnu2.chr3             C 0 I 79
s chlSab2.chr21            110432839 30 + 127223203 aaacaaaaacaaacaca-aacaacaaaaCAA
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52098630 31 -  59632846 AAAGAAAGTTaaaaaaaaaaaaaaaaaaaag
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I

a score=95313.000000
s hg38.chr7_GL383534v2_alt     50269 51 +    119183 AACATTTGGCACGTTCAGAAACAGCACAGACAAAGACAGACTCTATAGGTA
s panTro4.chr7             143150201 51 + 161824586 aACATTTGGCAAGTTCAGAAACAGCACAGACAAAGACAGACTCTATAGGTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138971158 51 + 157549271 AACATTTGGCAAGTTCAGAAACAGCACAGACAAAGACAGACTCTATAGGTA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93092059 47 + 110113093 aACATTTGGCAAGTTCAGAAACAGC----ACAAAGACAGACTCTATAGGTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180986990 51 + 198365852 aaCATTTGGCAATTTCAGAAACAGCACAGACAAAGATAAACTCTATAGGTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174732739 51 + 192294377 aaCATTTGGCAATTTCAGAAACAGCACAGACAAAGATAAACTCTATAGGTA
i macFas5.chr3             C 0 C 0
s chlSab2.chr21            110432869 51 + 127223203 AACATTTGGCAATTTCAGAAACAGCACAGACAAAGATAAACGCTATAGGTA
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52098661 38 -  59632846 ---------aaaGTTCAGAAACTTCACGGATAAAG----AATCTACAGGGA
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I
e papAnu2.chr3             163404084 79 + 180432695 I

a score=530872.000000
s hg38.chr7_GL383534v2_alt     50320 199 +    119183 TCTGGATGG-AGaaacttctccaaaacgactaatttcagataacagtagaacaatatctatagcatcctcaggggaagaagaaagcattcaagaattgtacaaccagcTGAGGATAAAGGGAACAGGCCAATAGTATT---AATCATGCAAGATC-------CTTTCA-----AAGAAAGAAAAGTGCTTGATGGTAAAATTCAACCATTAAGGA
s panTro4.chr7             143150252 199 + 161824586 TCTGGATGG-AGaaacttctccaaaacgactaatttcagataacagtagaacaatatctatagcatcctcaggggaagaagaaagcattcaagaattgtacaaccagctgagGATAAAGGGAACAGGCCAATAGTATT---AATCATGCAAGATC-------CTTTCA-----AAGAAATAAAAGTGCTTGATGGTAAAATTCAACCATTAAAGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138971209 199 + 157549271 TCTGGATGG-AGaaacttctccaaaacgactaatttcagataacagtagaacaatatctatagcatcctgagggaaagaagaaagcattcaagaattgtacaaccagctgaggataaacggaacaggccaatagtatt---aatcatgcaagaTC-------CTTTCA-----AAGAAAGAAAAGTGCTTGATGGTAAAATTCAACCATTCAAGt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93092106 199 + 110113093 TCTGGATGG-AGaaacttctccaaaacgactaatttcagataacagtagaacaacatctatagcatcctgaggggaagaagaaagcattcaagaattgtacgaccagctgagGATAAAGGGAACAGGCCAATAGTATT---AATCATACAAGATC-------CTTTCA-----AAGAAAGAAAAGTGCTTGATGGTAAAATTCAACCATTCAAGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180987041 199 + 198365852 TCTGGATGG-AGAAACTTCTCCAAAAGGACTAATTTCAGATAACAGTAGAACAGTATCTATAGCATCCTGAGGGGAAGAAGAAAGCATTCAAGAACTGTACAACCAGCTGAGGATAAAGGGAACAGGCCAACGGTATT---GATCATGCAAGATC-------CTTTCA-----AAGAAAGAAACGTGTTTGATGGTAAAATTCAACCATTCAAGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174732790 199 + 192294377 TCTGGATGG-AGAAACTTCTCCAAAAGGACTAATTTCAGATAACAGTAGAACAGTATCTATAGCATCCTGAGGGGAAGAAGAAAGCATTCAAGAACTGTACAACCAGCTGAGGATAAAGGGAACAGGCCAACGGTATT---GATCATGCAAGATC-------CTTTCA-----AAGAAAGAAACGTGTTTGATGGTAAAATTCAACCATTCAAGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163404163 199 + 180432695 TCTGGATGG-AGAAACTTCTCCAAAAGGACTAATTTCAGATAACAGTAGAACAGTATCTATAGCATCCTGAGGGGAAGAAGAAAGCATTCAAGAACTGTACAACCAGCTGAGGATAAAGGGAACAGGCCAACGGTATT---GATCATGCAAGATC-------CTTTCA-----AAGAAAGAAACGTGTTTGATGGTAAAATTCAACCATTCaaga
i papAnu2.chr3             I 79 C 0
s chlSab2.chr21            110432920 199 + 127223203 TCTGGATGG-AGAAACTTCTCCAAAAGGACTAATTTCAGATAACAGTAGAACAATATCTATAGCATCCTGAGGGGAAGAAGAAAGCATTCAAGAACTGTACAACCAGCTGAGGATAAAGGGAACAGGCCAACAGTATT---GATCATGCAAGATC-------CTTTCA-----AAGAAACAAACGTGTTTGATGGTAAAATTCCACCATTCAAGA
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52098699 213 -  59632846 TCTAGACATCAGagacttcccc-agacaaccagtatcagaagatagcacagcaatacttacagcatcttgagaggaagaaggaaagattccagaatctt-ctacccacccagaggaaagggattaaatgcacaagacctcagagaaggcaggtcccacgaaactttcacggggaaaagaataaagcgcttgatggcaaaacccaaccagccaaga
i canFam3.chr16            C 0 I 282
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I

a score=745301.000000
s hg38.chr7_GL383534v2_alt     50519 323 +    119183 tttttat--------------ttttttattttttaaacagggtcttgctctatcactcaggctggtgtgcagtggtgcaatcatagctcactgcagcattgaacttctgggctcaagccatcctctcacctcagcctcctaagtagctaggactacaggtgcacaccaccatgcctggctaatttttttgtttttgtagagttggaatcttgctttgttgcccaggctggtcttgaattcctggcttcaactgatcctcctaaattgatcctccttggcctcctaaagtgctgggattacaggcgtgagccaccATTCCTGATCAATTTTAATGTTT
s panTro4.chr7             143150451 323 + 161824586 tttttat--------------ttttttattttttaaacagggtcttgctctatcactcaggctggcgtgcagtggtgcaatcatagctcactgcaacattgaacttctgggctcaagccatcctctcacctcagcctcctaagtagctaggactacaggtgcacaccaccatgcctggctaatttttttgtttttgtagaggtggagtcttgctttgttgcccaggctggtcttgaattcctggcttcaactgatcctcctaaattgatcctccttggcctcctaaagtgctgggattacaggcgtgagccaccATTCCTGATCAATTTTAATGTTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138971408 335 + 157549271 ttttttt--attttttatttattttttattttttaaacagggtcttgctttatcactcaggctggcatgcaatggtgcaatcatagctcactgcagcattgaacttctgggctcaagccatcctctcacctcagcctcctaagtagctaggactacaggtgcacaccatcatgcctggctaatttttttgtttttgtagagttggaatcttgctttgttgcccagactggtcttgaattcccggcttcaactgatcctcctaaattgatcttctttggccttctaaagtgctgggattacaggcgtgagccaccATTCCTGATCAATTTTAATGTTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93092305 337 + 110113093 AttttttttattttttatttattttttattttttaaacagcgccttgctctgtcactgaggctggcgtaaaatgatgcaatcatagctcactgcagcattgaacttctgggctcaagccatcctctcacctcagcctcctaagtagctaggactacaggtgcacaccaccatgcctggctaatttttttgtttttgtagagttggaatcttgctttgttgcccaggctggtcttgaattcctggcttcaactgatcctcctaaattgatcctccttggcctcctaaagtgctgggattacaggcatgagccaccATTCCTGATCAGTTTTAATGTTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180987240 322 + 198365852 Atttatt----tttttattt-acttttatgttttagacagggtcttgctctgttactcaggctggagtgcaatggcacaatcatagctca----------gaacttctgggctcaagccatcgtctcacctcagcctcctaagtagctaggactacaggtgcacaccaccatgcctggctaatttttttgtttctgtagagttggaatcttgctttcttgcccaggctggtcttgaattcctggcttcaactcatcctcctaaattgatcctccttggcctcctaaagtgctgggattacaggcgtaagccaccATTCCTGATCAATTTTAATGTTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174732989 322 + 192294377 Atttatt----tttttattt-acttttatgttttagacagggtcttgctctgttactcaggctggagtgcaatggcacaatcatagctca----------gaacttctgggctcaagccatcgtctcacctcagcctcctaagtagctaggactacaggtgcacaccaccatgcctggctaatttttttgtttctgtagagttggaatcttgctttcttgcccaggctggtcttgaattcctggcttcaactcatcctcctaaattgatcctccttggcctcctaaagtgctgggattacaggcgtaagccaccATTCCTGATCAATTTTAATGTTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163404362 324 + 180432695 attttttta-gtttttattt-acttttatgttttagacagggtcttgctctgttactcaggctggagtgcaatggcacaatcatagctca----------gaactgctgggctcaagccatcgtctcacctcagcctcctaagtagctaggactacaggtgcacaccaccatgcctggctaa-ttttttgtttctgtagagTTGGAatcttgctttcttgcccaggctggtcttgaattcctggcttcaactCATCCTCCTAAATtgatcctccttggcctcctaaagtgctgggattacaggcgtaagccaccattcCTGatcaattttaatgttt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110433119 326 + 127223203 ATttttttatttttttattt-acttttatgttttagacagggtcttgctctgttactcaggctggagtgcaatggcacaatcatagctca----------gaacttctgggctcaagccatcgtctcacctcagccccctaagtagctgggactacaggtgcacaccaccatgcctggctaatttttttgtttctgtggagttggaatcttgctttgttgcccaggctggtcttgaattcctggcttcaactcatcctcctaaattgatcctccttggcctcctaaagtgctgggattacaggcgtaagccaccATTCCTGATCAATTTTAATGTTT
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e canFam3.chr16             52098912 282 -  59632846 I
e calJac3.chr8              23777477 2032 - 128169293 I

a score=50859.000000
s hg38.chr7_GL383534v2_alt     50842 28 +    119183 -ATATATTGTTTCCCAGTAAAGTACTGAC
s panTro4.chr7             143150774 28 + 161824586 -ATATATTGTTTCCCAGTAAAGTACTGAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138971743 28 + 157549271 -ATATATTGTTTCTCAGTAAAGTACTGAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93092642 28 + 110113093 -ATATATTGTTTCTCAGTAAAGTACTGAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180987562 28 + 198365852 -ATATATTGTTTCTCAGTAAACAATTGTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174733311 28 + 192294377 -ATATATTGTTTCTCAGTAAACAATTGTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163404686 28 + 180432695 -atatattgtttCTCAGTAAACAATTGTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110433445 28 + 127223203 -ATATATTGTTTCTCAGTAAACAATTGTT
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52099194 28 -  59632846 aaaaaataaataaaaattaaaaaatgaa-
i canFam3.chr16            I 282 C 0
e mm10.chr6                 40421164 991 + 149736546 I
e calJac3.chr8              23777477 2032 - 128169293 I

a score=1330748.000000
s hg38.chr7_GL383534v2_alt     50870 430 +    119183 AC---------CATATTGTCacgtttttcataattgtttttcttaattttggaggaatatttcaaggaatagtatatcttactgtga-------------------------------aaaaacatttacttgaagtt----------------------------------------ATAAGTCAAATTATGTTTAATATATTTCATTAACACAGCCTGCTATTTGAGAAAATTAAATT--CATAAAATATTAATCCTATTTTTGTAAAGATATTTGTATTCTAGAATTGCATTCATGGAATATTGTCAATGGATATCTGTGAGTGTTAATATATGAGAGGA---TTTTTAAAAATCCTCTGTACTTTCATATAAATT-------------------TTTAAATAAT--AAACG-TGTTTTCCACAAAC----AAGTTCA--TGGGTTCAAAGCT------GAAGAT-CACAATTATGTT-----------------------------GCATAAAAATGTTTACGTAGT------GATAAATTTTAAAAGTATAGACTATAAAAGAGGATATATATTGTATGA
s panTro4.chr7             143150802 426 + 161824586 AC---------CATATTGTCacgtttttcataattgtttttcttaattttggaggaatatttcaaggaatagtatatcttactgtga-------------------------------aaaaatattt----gaagtt----------------------------------------ATAAGTAAAATTATGTTTAATATATTTCATTAACACAGCCTGCTATTTGAGAAAATTAAATT--CATAAAATATTAATCCTATTTTTGTAAAGATATTTGTATTCTAGAATCGCATTCATGGAATATTGTCAATGGATATCTGTGAGTGTTAATATATGAGAGGA---TTTTTAAAAATCCTCTGTACTTTCatataaaat-------------------tttaaataat--aaaCG-TGTTTTCCACAAAC----AAGTTCA--TGTGTTCAAAGCT------GAAGAT-CACAATTATGTT-----------------------------GCATAAAAATGTTTACGTAGT------GATAAATTTTAAAAGTATAGACTATAAAAGAGGATATATATTGTATGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138971771 433 + 157549271 AT---------CATATTGTCacgtttttcataatcgtttttcttaattttggaggaatatctcaaggaatagtatatcttactgtga-------------------------------aaaaatatttacttgaagtt----------------------------------------ATAAGTAAAATTATGTTTAATATATTTCATTAACACAGCCTGCTATTTGAGAAAATTAAATC--CATAAAATATTAATCCTATTTTTGTAAAGATATTTGTATTCTAGAATCGCATTCATGGAATATTGTCAATGGATATCTGTGAGTGTTAATATATGAGAGGA---TTTTTAAAAATCCTTTGTACTTTCATATAAATT-------------------TTTAAATAA---ACATG-TGTTTTCCACAAACAATAAAGTTCA--TGCTTTCAAAGCT------GAAGAT-CACAATAATGTT-----------------------------GCATAGAAATGTTTACATAGT------GATAAATTTTAAAAGTATAGACTATAAAAAAGGATATATATTGTATGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93092670 432 + 110113093 AC---------CATATTGTCACATttttcataatcttttttcttaattttggaggaatatttcaaggaataatatat----ctgtga-------------------------------aaaaatatttacttgaagtt----------------------------------------ATAAGTAAAATTATGTTTAATATATTTCATTAACACAGCCTGCTATTTGAGAAAATTAAATC--CGTAAAATATTAATCCTATTTTTGTAAAGATATTTGTATtctagagtcacattcatggaatactgtcaatggatatctgtgagtgttaatatatgagagga---ttttttaaaatcctttgtactttcatataaatt-------------------tttaaataataaacatg-tgttttccacaaacaataaagttca--tgctttcaaaGCT------GAAGAT-CACAATTATGTT-----------------------------GCATAAAAATGTTTAAACAGT------GATAAATTTTAAAAGTATAGACTATAAAAGAGGATATATATTGCATGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180987590 441 + 198365852 ACATTTTGTCACATATTGTCACATttttcataatcgtttttcttaattttggaggaatatttcaatgaatagtgtatcttactgtga-------------------------------aaaaatatttacttgaagtt----------------------------------------ataagtaaaattatgtttaatatatgtcattaacacagcctgttatttgagaaaattaaatc--tataaaatattaatcctatttttgtcaagatatttgtattctacaatcacattcatggaatattgtcaatggatatctgtgagtgttactatttgagagga---ttttttaaaatcctttgtactttcatataaatt-------------------tttaaataataaacatg-ttttttccacaaacaacaaagtTCA--CACTTTCAAAGCT------GAAGAT-CACAATTATGTT-----------------------------GCATAAAAATGTTTAAATAGT------GATAAATTTTAAAAGTATAGACTATAAAAG----TATATATTGTATAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174733339 441 + 192294377 ACATTTTGTCACATATTGTCACATttttcataatcgtttttcttaattttggaggaatatttcaatgaatagtgtatcttactgtga-------------------------------aaaaatatttacttgaagtt----------------------------------------ATAAGTAAAATTATGTTTAATATATGTCATTAACACAGCCTGTTATTTGAGAAAATTAAATC--TATAAAATATTAATCCTATTTTTGTAAAGATATTTGTATTCTACAATCACATTCATGGAATACTGTCAATGGATATCTGTGAGTGTTACTATTTGAGAGGA---TTTTTTAAAATCCTTTGTACTTTCATATAAATT-------------------TTTAAATAATAAACATG-TTTTTTCCACAAACAACAAAGTTCA--CACTTTCAAAGCT------GAAGAT-CACAATTATGTT-----------------------------GCATAAAAATGTTTAAATAGT------GATAAATTTTAAAAGTATAGACTATAAAAG----TATATATTGTATAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163404714 439 + 180432695 ACATTTTGTCACATATTGTCACATTTTTCATAATcgtttttcttaattttggagGACTATTTCAATGAATAGTGTATCTTactgtga-------------------------------aaaaatatttacttgaagtt----------------------------------------ataagtaaaattatgtttaatatatGTCATTAACACAGCCTGttatttgagaaaattaaatc--tataaaatattaatcctatttttgtaaagatattTGTATTCTACAATCACATTCATGGAATATTGTCAATGGATATCTGTGAGTGTTACTATttgagagga---tttttaaaaatcctttgtactttcatataaatt-------------------tttaaataataaacatg-ttttttcCACAAACAACAAAGTTCA--CACTTTCAAAGCT------GAAGAT-CACAATTAtgtt-----------------------------acataaaaatgtttaa--agt------gataagttttaaaagtatagactataaaag----tatatattatatat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110433473 445 + 127223203 ACATTTTGTCACATGTTGTCACATttttcataacctttgttcttaattttggaggaatatttcaatgaatagtgtatcttactgtga-------------------------------aaaaatatttacttgaagtt----------------------------------------ATAAGTAAAAGTATGTTTAATGTATGTCATTAACACAGCCTGCTATTTGAGAAAATTAAATC--TATAAAATATTAATCCTATTTTTGTAAAGATATTTGTATTCTACAATCACATTCATGGAATATTGTCAATGGATATCTGTGAGTGTTACTACTTGAGAGGA---TTTTTAAAAATCCTTTGTACTTTCATATAAATT-------------------TTTAAATAATAAACATG-TTTTTTCCACAAACAACAAAGTTCA--CACTTTCAAAGCT------GAAGAT-CACAATTATGTC-----------------------------GCATAAAAATGTTTAAATAGT------GATAAATTTTAAAAGTATAGACTATAAAAGAATATACATATTGTATAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23779509 449 - 128169293 AC---------CACATTGTCAGgtttttcataatctttcttcttaattttggagaaatatttcaagtaatagtatatcttactgtga-------------------------------aaaaatatttacttgaagtt----------------------------------------ATAAGTAAAATTATGTTTAATATATTTCATTAACACAGCC---TATTTGAAAAAATTAAACC--TATAAAATATTAATCCTACTTTTGTAAAGGTATTTCTACTCTAGAATGACATTCACGGAATACTGTCAATGGATATCT----GTGTTAATATTTGAGAGAA---TTTTTAAAAATCTTTTGTACTTTCACATAAATTTTAAATAAACACATAAATGTTTAAATAATAAACATGTTTTTTTCCACAAACAATAAAGTTTA--CACTTTCAAAGCT------GAAGAT-CACAATTATGTT-----------------------------ACATAAAAATGTTTGAATAGT------GATAAATTTTAAAAGTATAGGCTATAAAAGAGTATATTTATTGTATGG
i calJac3.chr8             I 2032 C 0
s canFam3.chr16             52099222 542 -  59632846 ac---------tctatctttgtggttttcataatctttttccttaactttgaaggaatatttcaagaaataatgtacctctttgtaaaaacaaaacaaaacaaaaaaaccaaccaaacaaaaccatttacttgaagtttgacaattccttcggtttcattattctttccctctgatccataaggaagattaaattcaatgtatttca--aac-tagcctgctatatgataaaattaaatcctcgtaaagtattaatccgatttttgtaaaaccatttctattttagaatggcattcactgaatattaacaatggatatct--tggtgttaaaattcgggaagatttttttttaaatccatttgtgcttttatatacatt-------------------ttaaa-------agctt-tttttctcataaaaaacaaatttcatgtactttcaaagatgatcaagAAGatataaaaatatattaaaaattataaaaaataaaaaaaaaataaaaataaaaataataaaaaaatatataaaTTAAATTTTAAAGCTATAGGGTATAAAAA--CATATGCAGAGAAAGA
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40421164 991 + 149736546 I

a score=408258.000000
s hg38.chr7_GL383534v2_alt     51300 114 +    119183 TGCCAAATATATATTTTAAACGTACACACATACA-----CAGAAAAG------AAGTGGTAACATTTTGTCAGTGCTTCAGGGATTAGGGATAAATTTTCCCCTCA-------AAATCTGAAATGTAATTAG
s panTro4.chr7             143151228 114 + 161824586 TGCCAAATATATATTTTAAACGTACACACATACA-----CAGAAAAG------AAGTGGTAACATTTTATCAGTGCTTCAGGGATTAGGGATAAATTTTCCCCTCA-------AAATCTGAAATGTAATTAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138972204 114 + 157549271 TGCCAAATATATATTTTAAACATACACACATACA-----CAGAAAAG------AAGTGGTAACATTTTATCAGTGCTTCAGGAATTAGGGATAAATTTTCCCCTCA-------AAATCTGAAATGTAATTAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93093102 114 + 110113093 TGCCAAATATATATTTTAAACGTATACACATACA-----CAGAAAAG------AAGTGATAACATTTTATCAGTGCTTCAGGGATTAGGGATAAATTTGCCCCTCA-------AAATCTGCAATATAATTAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180988031 114 + 198365852 ACTCAAATATGTATTTTAAACGTACTCACATACA-----CAGAAAAG------AAGTGGTAACATTTTGTCAGTGCTTCAGGGATTAGGGATAAATTTTCCCCTCA-------AAATCTGAAATGTAATTAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174733780 114 + 192294377 ACTCAAATATGTATTTTAAACGTACTCACATACA-----CAGAAAAG------AAGTGGTAACATTTTGTCAGTGCTTCAGGGATTAGGGATACATTTTCCCCTCA-------AAATCTGAAATGTAATTAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163405153 121 + 180432695 actcaaatatgtattttaaatgtacacacataca-----cagaaaag------aaGTGGTAACATTTTGTCAGTGCTTCAGGGATTGGGGATAAATTTTCCCctcaaaatctgaaatctgaaatgtaaTTAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110433918 121 + 127223203 ACTCAAATATGTATTTTAAACGTACACACATACA-----CAGAAAAG------AAGTGGTAACATTTTGTCAGTGCTTCAGGGATTAGGGATAAATTTTCCCCTCAAAATCTGAAATCTGAAATGTAATCAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23779958 114 - 128169293 TGCCaaatatatattttaaataaatGTGCAAAAA-----CAGAAAAG------AAGTGGTAACATTTTATCAGTGCTTCAGGGATTAGGGATAAATTTTCCCCTCA-------AAATCTGAAATGTAATTAG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40422155 116 + 149736546 TGTCAAGGATATTTTATCAAAACACACAAATATATGTATCAGAAAAC------AGAC--TAACATTTTAACAATGCTTCTAGGAGTAGAGAAAAAATC-CCCAGCA-------CTGTTTGAAGTTTAATTAG
i mm10.chr6                I 991 C 0
s canFam3.chr16             52099764 121 -  59632846 TACCAAGTATATATTTTTTATATACACATGTATA----CCAGAAAAGCAGCAAATGTGCTAAAATTTTAATAATGCTTCAGGGATCAGGGATAGATTTCTCTCTCA-------AAATCTGAAATGAgggcag
i canFam3.chr16            C 0 I 157

a score=61537.000000
s hg38.chr7_GL383534v2_alt     51414 17 +    119183 GTTACCTGCATGATGAA
s panTro4.chr7             143151342 17 + 161824586 GTTACCTGCATGATGAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138972318 17 + 157549271 GTTACTTGCATGATGAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93093216 17 + 110113093 GTTACTTGCATGATGAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180988145 17 + 198365852 GTTACTTGCATGATGAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174733894 17 + 192294377 GTTACTTGCATGATGAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163405274 17 + 180432695 GTTACTTGcatgatgaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110434039 16 + 127223203 GTTACTTGCATGAT-AA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23780072 17 - 128169293 GTTACTTGCACAATGAA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40422271 17 + 149736546 GTTACCTGCATAATGAA
i mm10.chr6                C 0 C 0
e canFam3.chr16             52099885 157 -  59632846 I

a score=454816.000000
s hg38.chr7_GL383534v2_alt     51431 166 +    119183 AAAAATGTAAAGTAACTAATCGTTTTGCTGCTTCTGTTAAAAATTCTCTTCCTATgccaggcaccttggctcatgcctataatctcagctctttggcaggctgaggcaggaggatcacttgactgcaggagttcaggaccagcctgggcaatatagtaagagcctg
s panTro4.chr7             143151359 166 + 161824586 AAAAATGTAAAGTAACTAATCGTTTTGCTGCTTCTGTTAAAAATTCTCTTCCTATgccaggcaccttggctcatgcctataatctcagctctttggcaggctgaggcaggaggatcacttgactgcaggagttcaggaccagcctgggcaatatagtaagagcctg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138972335 166 + 157549271 AAAAATGTAAAGTAACTAATCATTTTGCTGCTTCTGTTAAAAATTCTCTTCCTATgccaggcaccttggctcacgcctataatctcagctctttggcaggctgaggcaggaggatcacttgactctaggagttcaggaccagcctgggcaatatagtaagagcctg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93093233 166 + 110113093 AAAAATGTAAAGTAACTAATCGTTTTGCGGCTTCTGTTAGAAATTCTCTTCCTATgccaggcaccttggctcacgcctataatctcagctctttggcaggctgaggcaggaggatcacttgactctaggagttcaggaccagcctgggcaatatagtaagagcctg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180988162 166 + 198365852 AAAAATGTAAAGTAACTAATGGTTTTGCTGCTTCTGTTAAAAATTCTCTTCCTATCCCAGGCAACTtggctcatgcctataatcccagctctttggcgggctgaggcaggaggatcacttgactccaggagtccacgaccagcctgggcaatatagtaagagcctg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174733911 166 + 192294377 AAAAATGTAAAGTAACTAATGGTTTTGCTGCTTCTGTTAAAAATTCTCTTCCTATCCCAGGCAACTtggctcatgcctataatcccagctctttggcgggctgaggcaggaggatcacttgactccaggagttcacgaccagcctgggcaatatagtaagagcctg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163405291 147 + 180432695 aaaaatgttaaa-----aatttttttg------ctgTTAAAAATTCTCTTCCTATCCCAGGCAACTTGGCTCACG--------CCAAGCTCTTTggcgggctgaggcaggaggatcacttgactccaggagttcaagaccagcctgggcaatatagtaagagcctg
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110434055 154 + 127223203 AAAAATGTTAAA-----ATTTTTTTTG------CTGTTAAAAATTCTCTTCCTATCCCAGGCAACTtggctcacacctataatcccagctctttggtgggctgaggcaaga-gatcacttgactccaggagttcaagaccagcctgggcaatatagtaagagcctg
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23780089 161 - 128169293 AAAAATGTAAAT-----AATCATTTTGCTGCTTCTGTTAAAAATTCTCTTCCTATGTCACGCACCTtggctcacacctataatcccagctctttggcaggctaagatgggaggatcatttgactccaggagttcaagaccagcctgggcaatatgttaagagcctg
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40422288   0 + 149736546 C
e canFam3.chr16             52099885 157 -  59632846 I

a score=41984.000000
s hg38.chr7_GL383534v2_alt     51597 16 +    119183 tctctaccaaaaaaaa---
s panTro4.chr7             143151525 16 + 161824586 tctctaccaaaaaaaa---
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138972501 16 + 157549271 tctctaccaaaaaaaa---
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93093399 15 + 110113093 tctctaccaaaaaaa----
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180988328 14 + 198365852 --tctaccagaaaaaa---
i rheMac3.chr3             C 0 I 7
s macFas5.chr3             174734077 14 + 192294377 --tctaccaaaaaaaa---
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163405438 16 + 180432695 tctctatcaaaaaaaa---
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110434209 16 + 127223203 tctctaccaaaaacaa---
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23780250 16 - 128169293 tctctacaaaaaaaaa---
i calJac3.chr8             C 0 I 1
s canFam3.chr16             52100042 19 -  59632846 tctttaaaaaaaaAATCTG
i canFam3.chr16            I 157 C 0
e mm10.chr6                 40422288  0 + 149736546 C

a score=500.000000
s hg38.chr7_GL383534v2_alt     51613 10 +    119183 aaaaaaaAat-
s panTro4.chr7             143151541 10 + 161824586 aaaaaaatat-
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138972517  4 + 157549271 aaaa-------
i ponAbe2.chr7             C 0 C 0
s calJac3.chr8              23780267 10 - 128169293 aaaaaaaaaa-
i calJac3.chr8             I 1 C 0
s canFam3.chr16             52100061 10 -  59632846 -AAATGAAATT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40422288  0 + 149736546 C
e chlSab2.chr21            110434225  0 + 127223203 C
e papAnu2.chr3             163405454  0 + 180432695 C
e macFas5.chr3             174734091  0 + 192294377 C
e rheMac3.chr3             180988342  7 + 198365852 I
e nomLeu3.chr13             93093414  0 + 110113093 C

a score=-34428.000000
s hg38.chr7_GL383534v2_alt     51623 29 +    119183 ----------atatatatatatatatatatatatatata-----
s panTro4.chr7             143151551 18 + 161824586 ----------atatatatatatatatat----------------
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138972521 16 + 157549271 ------------aTATATATATATATGT----------------
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93093414 17 + 110113093 -----------tataTATATATATTTTT----------------
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174734091  6 + 192294377 ---------------------TATTTT-----------------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163405454  5 + 180432695 ----------------------aattt-----------------
i papAnu2.chr3             C 0 I 1
s chlSab2.chr21            110434225  5 + 127223203 ----------------------aaTTT-----------------
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23780277  7 - 128169293 ----------aaCCACC---------------------------
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40422288 16 + 149736546 ------------ATATATATGTAAATAT----------------
i mm10.chr6                C 0 I 13
s canFam3.chr16             52100071 33 -  59632846 AGAGTGATGAAAAAATTTAGAAAATCAT-----------GCCTA
i canFam3.chr16            C 0 C 0
e rheMac3.chr3             180988342  7 + 198365852 I

a score=100085.000000
s hg38.chr7_GL383534v2_alt     51652 35 +    119183 tTTTT--------------AAGTTCTCTTTC-TATTATCCCAATCATAGT-
s panTro4.chr7             143151569 32 + 161824586 ---TT--------------AAGTTCTCTTTC-TATTATCCCAATCATAGT-
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138972537 32 + 157549271 ---TT--------------AAGTTATCTTTC-TATTATCCCAATCATAGT-
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93093431 32 + 110113093 ---TT--------------AAGTTCTCTTTC-TATTATCCCAATCATAGT-
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180988349 35 + 198365852 TTTTT--------------AAGTTCTCTTCC-TATTATCCCAATCATAGT-
i rheMac3.chr3             I 7 C 0
s macFas5.chr3             174734097 35 + 192294377 TTTTT--------------AAGTTCTCTTCC-TATTATCCCAATCATAGT-
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163405460 34 + 180432695 -tttt--------------aagttctctTCC-TATTATCCCAATCATAGT-
i papAnu2.chr3             I 1 C 0
s chlSab2.chr21            110434230 35 + 127223203 TTTTT--------------AAGTTCTCTTCC-TATTATCCCAATCATAGT-
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23780284 35 - 128169293 TTTTT--------------AAGTTCTCTTTT-GATTATCCCAATCATAAT-
i calJac3.chr8             C 0 I 313
s mm10.chr6                 40422317 30 + 149736546 TTTTC--------------TGCTTCTGTTACATATTATCCTACT-------
i mm10.chr6                I 13 C 0
s canFam3.chr16             52100104 50 -  59632846 GTTTTGCTGCTTCTGTTAAAAATCCCCTTCC-TATTACCACAAGCAGGAAT
i canFam3.chr16            C 0 C 0

a score=2019866.000000
s hg38.chr7_GL383534v2_alt     51687 513 +    119183 AAGAATCCCAATAATAAAAGAAGTAGGCTTTAAGAAA-GTTTAGGATTTCTTTGCCTACTTGGGGCAAGGAG-GTAACTATTGCGG----CTTTGCATAAACAAAGATCATGTACCTGTCAAAAAATGACTTAATTTTA-AAAAGTGATGGTAGTATTAAATCCAAACTGAAGGCAGA-ATATACCCCAGC-TTTCATTATAGAGTGAAGACTCATC------------ATGCAGGACGTTGGCTGAAACGAAAGGACACCACCCGAGGCGTGAAACATCGCCATGGATGTTCTTGGAAAGACATCTGCTGCTCTGGCACGCAAATGCTGTCTCCGAGGGCTCGTGCCATATGCAC------------------------CAGCTGGTGGAT-CCTGCTGCCTCCCTGCACATGT-----------ACGGAAGCCACGTACCGAACCTGGTTCTCCAAGAAGTGCATGTAGCGGTAAAGCAGTGTGTAGGAGGGAGAGAGGATGCCCACAGACTTCATCCGCGCGCCACGTTCCAGCTCGCTCTCCACGGGCATGTTGGCAAAGCAGGCC
s panTro4.chr7             143151601 513 + 161824586 AAGAATCCCAATAATAAAAGGAGTAGGCTTTAGAAAA-GTTTAGGATTTCTTTGCCTACTTGGGGCAAGGAG-GTAACTATTGCGG----CTTTGCATAAACAAAGATCATGTACCTGTCAAAAAATGACTTAATTTTA-AAAAGTGATGGTAGTATTAAATCCAAACTGAAGGCAGA-ATATACCCCAGC-TTTCATTATAGAGTGAAGACTCATC------------ATGCAGGACGTTGGCTGAAACGAAAGGACACCACCCGAGGCGTGAAACATCGCCATGGATGTTCTTGGAAAGACATCTGCTGCTCTGGCACGCAAGTGCTGTCTCCGAGGGCTCGTGCCATATGCAC------------------------CAGCTGGTGGAT-CCTGCTGCCTCCCTGCACATGT-----------ACGGAAGCCACGTACCGAACCTGGTTCTCCAAGAAGTGCATGTAGCGGTAAAGCAGTGTGTAGGAGGGAGAGAGGATGCCCACAGACTTCATCCGCGCGCCACGTTCCAGCTCGCTCTCCACGGGCATGTTGGCAAAGCAGGCC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138972569 514 + 157549271 AAGAATCCCAATAATAAAAGGAGTAGGCTTTTAAAAA-GTTTAGGATTTCTTTGCCTACTTGACGCAAGGAG-GTAACTATTGCGG----CTTTGCATAAACAAAGATCATGTACCCGTCAACAAATGACTTAATTTTA-AAAAGTGATGGCAGTATTAAATCCAAACTGAAGGCAGA-ATATACCCCAGCTTTTCATTATAGAGTAAAGACTCATC------------ATGCAGGACGTTGGCTGAAACGAAAGGACACCATCCGAGGCGTGAAACATCGCCATGGATGTTCTTGGAAAGACATCTGCTGCTCTGGCACGCAAGTGCTGTCTCCGAGGGCTCGTGCCATATGCAC------------------------CAGCTGGTGGAT-CCTGCTGCCTCCCTGCACATGC-----------ACGGAAGCCACGTACCGAACCTGGTTCTCCAAGAAGTGCATGTAGCGGTAAAGCAGTGTGTAGGAGGGAGAGAGGATGCCCACAGACTTCATCCGCGCGCCACGTTCCAGCTCACTCTCCACGGGCATGTTGGCAAAGCACGCC
i ponAbe2.chr7             C 0 I 216
s nomLeu3.chr13             93093463 513 + 110113093 AAGAATCCCAGTAATAAAAGGAGTAGGCTTTTAAAAA-GTTTAGGATTTCTTTGCCTACTTGGGGCAAGGAG-GTAACTATTGTGG----CTCTGCATAAACAAAGATCATGTACCTGTCAACGAATGACTTAATGTTA-AAAAGTGATGGCAGTATTAAATCCAAACTGAAGGCAGA-ATATACCCCAGC-TTTCATTATAAAGTGAAGACTCATC------------ATGCAGGACGTTGGCTGAAACGAAAGGACACCACCCGAGGCGTGAAACATCGCCATGGATGTTCTTGGAAAGACATCTGCTGCTCTGGCACGCAAGTGCTGTCTCCGAGGGCTCGTGCCATATGCAC------------------------CAGCTGGTGGAT-CCTGCTGCCTCCCTGCACATGT-----------ACGGAAGCCACGTACCGAACCTGGTTCTCCAAGAAGTGCATGTAGCGGTAAAGCAGTGTGTAGGAGGGAGACAGGATGCCCACAGATTTCATCCGCGCGCCACGTTCCAGCTCGCTCTCCACTGGCATGTTGGCAAAGCAGGCC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180988384 513 + 198365852 AAGAATGCCAATAATAAAAAGAGTAGGCTTTTAAAAA-GTTTAGGATTTCTTTGCCAACTTGGGGCGAGGAG-GTAACTATTGTGG----CTTTGAATAAACAAAGATCATGTACCTGTCAACAAATGATTTAATTTAA-AAAAGTGATGGCAGTATTAAATCCAAACTGAAGGCAGA-ATATACCCCGGC-TTTCATTATAGAGTGAAGACTCATC------------ATGCAGGACGTTGGCTGAAATGAAAGGACACTACCCGAGGCGTGAAACATCGCCATGGATGTTCTTGGAAAGACATCTGCTGCTCTGGCACGCAAGTGCTGTCTCCGAGGGCTCGTGCCATATGCAC------------------------CAGCTGGTGGAT-CCTGCTGCCTCCCTGCACATGT-----------ACGGAAGCCACGTACCGAACCTGGTTCTCCAAGAAGTGCATGTAGCGGTAAAGCAGCGTGTAGGAGGGAGAGAGGATGCCCACAGACTTCATCCGCGCGCCACGTTCCAGCTCGCTCTCCACTGGCATGTTGGCAAAGCAGGCC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174734132 513 + 192294377 AAGAATCCCAATAATAAAAAGAGTAGGCTTTTAAAAA-GTTTAGGATTTCTTTGCCAACTTGGGGCGAGGAG-GTAACTATTGTGG----CTTTGAATAAACAAAGATCATGTACCTGTCAACAAATGATTTAATTTAA-AAAAGTGATGGCAGTATTAAATCCAAACTGAAGGCAGA-ATATACCCCGGC-TTTCATTATAGAGTGAAGACTCATC------------ATGCAGGACGTTGGCTGAAATGAAAGGACACTACCCGAGGCGTGAAACATCGCCATGGATGTTCTTGGAAAGACATCTGCTGCTCTGGCACGCAAGTGCTGTCTCCGAGGGCTCGTGCCATATGCAC------------------------CAGCTGGTGGAT-CCTGCTGCCTCCCTGCACATGT-----------ACGGAAGCCACGTACCGAACCTGGTTCTCCAAGAAGTGCATGTAGCGGTAAAGCAGCGTGTAGGAGGGAGAGAGGATGCCCACAGACTTCATCCGCGCGCCACGTTCCAGCTCGCTCTCCACTGGCATGTTGGCAAAGCAGGCC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163405494 513 + 180432695 AAGAATCCCAATAATAAAAAGAGTaggcttttaaaaa-gtttaggaTTTCTTTGCCAACTTGGGGCGAGGAG-GTAACTATTGTGG----CTTTGAATAAACAAAGATCATGTACCTGTCAACAAAtgacttaatttaa-aaaagtgatgGCAGTATTAAATCCAAACTGAAGGCAGA-ATATACCCCGGC-TTTCATTATAGAGTGAAGACTCATC------------ATGCAGGACGTtggctgaaatgaaaggacactaccCGAGGCGTGAAACATCACCATGGATGTTCTTGGAAAGACATCTGCTGCTCTGGCACGCAAGTGCTGTCTCCGAGGGCTCGTGCCATATGCAC------------------------CAGCTGGTGGAT-CCTGCTGCCTCCCTGCACATGT-----------ACGGAAGCCACGTACCGAACCTGGTTCTCCAAGAAGTGCATGTAGCGGTAAAGCAGCGTgtaggagggagagaggatgCCCACAGACTTCATCCGCGCGCCACGTTCCAGCTCGCTCTCCACTGGCATGTTGGCAAAGCACGCC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110434265 513 + 127223203 AAGAATCCCAATAAAAAAAAGAGTAGGCTTTTAAAAA-GTTTAGGATTTCTTTGCCAACTTAGGGCGAGGAG-GTAACTATTGTGG----CTTTGAATAAACAAAGATCATGTACCTGTCAACAAATGACTTAATTTTA-AAAAGTGATGGCAGTATTAAATCCAAACTGAAGGCAGA-ATATACCCCGGC-TTTCATTATAGAGTGAAGACTCATC------------ATGCAGGACGTTGGCTGAAATGAAAGGACACTACCCGAGGCGTGAAACATCGCCATGGATGTTCTTGGAAAGACATCTGCCGCTCTGGCACGCAAGTGCTGTCTCCGAGGGCTCGTGCCATATGCAC------------------------CAGCTGGTGGAT-CCTGCTGCCTCCCTGCACATGT-----------ACGGAAGCCACGTACCGAACCTGGTTCTCCAAGAAGTGCATGTAGCGGTAAAGCAGCGTGTAGGAGGGAGAGAGGATGCCCACAGACTTCATCCGCGCGCCACGTTCCAGCTCGCTCTCCACTGGCATGTTGGCAAAGCAGGCC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23780632 511 - 128169293 aagaaTCCCAATAAT-AAAGGAGTAGACTTTTAAAAA-GTTTAGGATTTCTTTGCCTACCTAGGGCAAGGAG-ATAACTATTGTGG----TTTTGCATAAACAAACATCATGTACCTGTCAATAAATGATTTAATTTTA-AGAAGTGATGGCAGTATTAAATCCAAACTGAAGGTATA-ATATAGCCCAGC-TTTCATTATAGAGTGAAGAATCATC------------ATGCAGGGCGTTGGCTCAAATGAAAGGATACCACCCGAGGCACAAAACCTCGCCATGGATGTTCTT-GAAAGACATCTGCTGCTCTGGCACACAAGTGCTGTCTCCAAGGGCTAGTGCCATATGCAC------------------------CAGCTGGTGGAT-CCTGCTGCCTCCCTGCACATGT-----------ACGGAAGCCACGTACCGAACCTGGTTCTCCAAGAAGTGCATGTAGCGGTAAAGCAGTGTGTAGGAGGGAGAGAGGATGCCCACAGACTTCATCCGCGCGCCACGTTCCAGCTCGCTCTCCACGGGCATGTTGGCAAAGCAGGCC
i calJac3.chr8             I 313 C 0
s mm10.chr6                 40422347 507 + 149736546 ----ACTCCAAAAA--AAAATGATATGTATAAAACAATATTTAAAGTCTGCCTGCCTACCTGGGGGGAAAATCATAAGGATAGCAGCCAACTGAGTGCAAACAAAG---ATGTTCATGTC------TGA-------TTA-AAACGTGATGAGAGTATT-AATAAAAACTGAAAGTAAATATCTTCCCCAGC-CTTCATTATAGGATGAAGAGCTATT------------TTATAATACATTTGCTGAAAGAAAGGAGGGTCACCTGAGGCTTGGCCCAGAGCCACTGATGCTGTAGG-AAGACAGCTGTGGCCCTGGCCCACAGTCCCCATCTCCAGGGACTCACAGCACAGGCAC------------------------CAGGTAACAAAT-CCCGCTGCTGCCCGAAACATATAGAAGCCACTCACAGACGCCACTTACCGAACCTGGTTCTCCAAAAAGTGCATGTAGCGGTAGAGCAGGGTGTAGGATGGAGAGAGGATGCCCACAGACTTCATCCGAGCGCCTCGCTCCAGCTCGCTCTCCACAGGCATGTTGGCAAAGCAGGCC
i mm10.chr6                C 0 C 0
s canFam3.chr16             52100154 525 -  59632846 AACCACCCCAAGTAATACAGGGTTAGGCTTAAGAAGA-GTTCAGAGTCTGTTTGCCTACGTGGGGCGAGGAG-GTATTTACTGTGG----CTTCGGGTAAACAAAGATCACGTAATGGTCAACAGATCGTGTAATTCAACAAAACTGATGACACCA-GAAGCAAACACGGAAGGCA-A-ATCCACCCC-GC-TCTCCCTGCAGCGTGAAGAATCTTCGGGATTTTTCCAAAGCAGGACTTTGGCTGAAA-----------CACCGGAGGTGTGA-------CCATGGATGTGCGTGGCAGGGCATGTG-----CTGGCACACAGCCTTCATCACTGAGGGCCCTacacacacacacacacacacacacacacacacacaGCAGCTGGCCAGTCCCTGTAGCCTCCCCCCGCACGT-----------ATGCAAGCCACGTACCGAACCTGGTTCTCCAAGAAGTGCATGTAGCGGTAGAGCAGGGTGTAGGATGGCGACAGGATGCCCACGGACTTCATACGTGCCCCACGCTCCAGCTCGCTCTCCACGGGCATGTTGGCGAAGCAGGCC
i canFam3.chr16            C 0 C 0

a score=3849128.000000
s hg38.chr7_GL383534v2_alt     52200 1111 +    119183 AGGCCGAAGAAGGGCCCCTTTCGGAAATAGCTAGAAGAGACCAAATACGTAGTGTGGCTCAAGATCAGAGAGGA------------------------------------------ATTTTGAGATGCAATCCTAAACAAAACAAATGAACTGTGTTCGGGGCTGTCA-ATGACAAAGCTCAGCCTCAAGAAAA---------------CAAGCG------GGCCAAGCCACATG---ACCTCACT-----GATGA----------GCTTGAAGAGATTACATAACTTGCC-----------AAGGGTCACTTGGCTGGAGCTGGGACTTAGTCCGTG-------GCAAGCCTGCCGCTCAGCTGCCCACAATCAT-GGACACATCTCTTCTCTCCTGCACCACGACTAATGACTTGGATGGGTGAAGCAGAACCAACATTCCTCTTCAGGCTCCTCTGGAACTTGGACTCTCTTTCGTAGCATAAACCACAGTGATTC-TTCCCTTACTTCCTGAGGCTCTGATATTTTTCACTGAGCTG--------------CCATTTTATTTCCTCCTCTT---------------CTCACACTTGTATCAATCATGAATTAAGCCCCATGAGGAGATTAAAGCCAC-------TTCATTACCCTTAAGCTCTTTCCATT-GTTCCTTCTCGCAAAACTCTCTGAATGCCCCACTACACAGGACT--AAAAAATGGCCTTACTTAAAGCTGAAATTTCAAGGTTGAACACATAGATATCCTCAGTTAACTCACACGGGGCTGAAACTGTGCACTTTCATTAAAACCAAACCTCAAGTGAGGTCCAT---GTAATTTCTGAGAAAGTGAGAGAACCTCTACAGGcagggattcttaagatttgcagg--------tcatgaagcccattgagaatctgatgaaagctaga---catctcactagaaaaatgatgtaaacacaaaactatccatg-tattttcaaggcatttacacacAGCACACGAAG--ACCTCCTAATAAGAGCCCTTCAGCTTTGGGGAAAGT-GTGGAGGTGGGGG-GAATGGTA-CGAAGATGACTCCAGTTCAGAAGTACTTACATGAAATCAGATTGGATTTTATGGGACCCACTGGCCATAGACTTGAACTCAACACCTTCAAGGTCAATATCTTGAGGTAAGCACCATTCTACCATGTTTCCTGCAGGAAAAGGAAGATGCAAGTTAAAAGAAAC-AACATCATTCAAAGAAAATGGGTTA
s panTro4.chr7             143152114 1111 + 161824586 AGGCCGAAGAAGGGCCCCTTTCGGAAATAGCTAGAAGAGACCAAATACGTAGTGTGGCTCAAGATCAGAGAGGA------------------------------------------ATTTTGAGATGCAATCCTAAACAAAACAAATGAACTGTGTTCGGGGCTGTCA-ATGACAAAGCTCAGCCTCAAGAAAA---------------CAAGCG------GGCCAAGCCACGTG---ACCTCACT-----GATGA----------GCTTGAAGAGATTACATAACTTGCC-----------AAGG-TCACTTGGCTGGAGCTGGGACTTAGTCCGTG-------GCAAGCCTGCCGCTCAGCTGCCCACAATCAT-GGACACATCTCTTCTCTCCTGCACCACGACTAATGACTTGGATGGGAGAAGCAGAACCAACATTCCTCTTCAGGCTCCTCTGGAACTTGGACTCTCTTTCGTAGCATAAACCACAGTGATTC-TTCCCTTACTTCCTGAGGCTCTGATATTTTTCACTGAGCTG--------------CCATTTTATTTCCTCCTCTT--------------TCTCACACTTGTATCAATCATGAATTAAGCCCCATGAGGAGATTAAAGCCAC-------TTCATTACCCTTAAGCTCTTTCCATT-GTTCCTTCTCGCAAAACTCTCTGAATGCCCCACTACACAGGACT--AAAAAATGGCCTTACTTAAAGCTGGAATTTCAAGGTTGAACACATAGATGTCCTCAGTTAACTCACACGGGGCTGAAACTGTGCACTTTCATTAAAACCAAACCTCAAGTGAGGTCCAT---GTAATTTCTGAGAAAGTGAGAGAACCTCTACAGGcagggattcttaagatttgcagg--------tcatgaagcccattgagaatctgatgaaagctaga---catctcactagaaaaatgatgtaaacacaaaactatccatg-tattttcaaggcatttacacacAGCACACGAAG--ACCTCCTAATAAGAGCCCTTCTGCTTTGGGGAAAGT-GTGGAGGTGGGGG-GAATGGTA-CGAAGATGACTCCAGTTCAGAAGTACTTACATGAAATCAGATTGGATTTTATGGGACCCACTGGCCATAGACTTGAACTCAACACCTTCAAGGTCAATATCTTGAGGTAAGCACCATTCTACCATGTTTCCTGTAGGAAAAGGAAGATGCAAGTTAAAAGAAAC-AACATCATTCAAAGAAAATGGGTTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138973299 1121 + 157549271 AGGCCGAAGAAGGGCCCCTTTCGGAAATAGCTAGAAGAGACCAAATACGTAGTGTGGCTCAAGATCAGAGAGGA------------------------------------------ATTTTGAGATGCAATCCTAAACAAAACAAATGAACTGTGTTCGGGGCTGTCA-ATGACAAAGCTCAGCCTCAAGAAAA---------------CAAGTG------GGCCAAGCCATGTG---ACCtcact-----gatgagacaagcaaggcttgaagagattacataacttgcc-----------aagggtcactcggctggagctgggacttagtccgtg-------gcaagcctgccgctcAGCTGCCCACGATGAT-GGACACGTCTCTTCTCTCCTGCACTACAACTAATGACTTGGATGGGAGAAGCAGAACCAACATTCCTCTTCAGGCTCCTCTGGAACTAGGACTCTCTTTTGCAGCATAAACCGCAGTGATTC-TTCCCTTACTTCCTGAGGCTCTGATATTTTTCACTGAGCTG--------------CCATTTTATTTCCTCCTCTT--------------TCTCACACTTGTATCAGTCATGAATTCAGCCCCATGAGGAGATTAAAGCCAC-------TTCATTACCCTTAAGCTCTTTCCATT-GTTCCTTCTCACAAAACTCTCTGAATGCCCCACTACACAGGACT--AAAAAATGGCCTTACTTAAAGCTGGAATTTCAAGGTTGAACACATAGCTGTCCTCTGTTAATTCACACGGGGCTGAAACTGTGCACTCTCATTAAAACCAAACCTCAGGTGAGGTCCAT---GTAATTTCCGAGAAAGTGACAGAACCTCTACAGGcagagattcttaagatttacagg--------tcatgaagcccattgagaacctgatgaaagctaga---catctcactagaaaaatgatgtgaacacaaaactatccatg-tattttcaaggcatttacacacagcacatgaag--AGCTCCTGATAAGAGCCCTTCTGCTTTGGGGAAAGT-GTGGAGGCAGGGG-GAATGGTA-CGAAGA-GACTCCAGTTCAGAAGTACTTACATGAAATCAGATTGGATTTTATGGGACCCACTGGCCATAGACTTGAACTCAACACCTTCGAGGTCAATATCTTGAGGTAAGCACCATTCTACCATGTTTCCTGTAGGAAAAGGAAGATGCGAGTTAAAAGAAAC-AACATCATTCAAAGAAAATGGGTTA
i ponAbe2.chr7             I 216 C 0
s nomLeu3.chr13             93093976 1131 + 110113093 AGGCCGAAGAAGGGCCCCTTTCGGAAATAGCTAGAAGAGACCAAATACGTAGTGTGGTTCAAGATCAGAGAGGA------------------------------------------ATTTTGAGATGCAATCCTAAACAAAACAAATGAACTGTGTTTGGGGCTGTCA-ATGACAAAGCTCAGCCTCAAGAAAA---------------CAAGTG------GGCCAAGCCACGTG---ACCTCACT-----GATGAGACAAGCAAGGCTT-----GATTACAGAACTTGCC-----------AAGGGTCACCCAGCTGGAGCTGGGACTTAGTCTCCG-------GCAAGCCTGCCGCTCAGCTACCCACGATCAT-GGACACATCTCTTCTCTCCTGCACCACAAATAATGACTTGGATGGCAGAAGCAGAACCAACATTCCTCTTCAGGCTCCTCTGGAACTAGGACTCTCTTTCGTAGCATAAACTGCAGTGATTC-TTCCCTTACTTCCTGAGGCTCTGATATTTTTCACTGAGCTG--------------CCATTTCATTTCCTCCTCTTCATTTCCTCCTCTTTCTCACACTTGTATCAGTCATGAATTCAGCCCCATGAGGAGATTAAAGCCAC-------TTCATTACCCTTAAGCTCTTTCCATT-GTTCCTTCTCACAAAACTCTCTGAATGCCCCACTACACAGGACT--AAAAAATGGCCTTACTTAAAGCTGGAATTTCAAGGTTGAACACATAGATGTTCTCAGTTAACTCACACGGGGCTGAAACTGTGCACTTCCATTAAAACCAGACCTCAAGTGAGGTCCAT---GTAATTTCTGAGAAAGTGAGAGAACCTCTACGGGTagggattcttaagatttgcagg--------tcatgaagcccattgagaatctgatgaaagctagc---catctcactagaaaaatgatgtaaacacaaaactatccatg-cattttcaaggcatttacacatagcacatgaag--accTCCTAATAAGAGCCCTTCTGCTTTGGGGAAAGT-GTGGAGGTGGGGG-GAATGGTA-CGAAGAAGACTCCAGTTCAGAAGTACTTACATGAAATCAGATTGGATTTTATGGGACCCACTGGCCATTGACTTGAACTCAACACCTTCAAGGTCAATATCTTGAGGTAAGCACCATTCTACCATGTTTCCTGTAGGAAAAGGAAGGTGCAAGTTAAAAGAAAC-AATATCATTCAAAGAAAATGGCTTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180988897 1110 + 198365852 AGGCCGAAGAAGGGCCCCTTTCGGAAATAGCTAGAAGAGACCAAATACATAGCGTGGCTCAAGATCAGAGAGGA------------------------------------------ATTTTGAGATGCATTCCTAAACAAAACAAATGAACCGTGTCTGGAGCTGTCA-ATGACAAAGCTCAGCCTCAAAGAAA---------------CAAGTA------GGCCAAGCCACTTG---ACCTCACC-----GATGAGACGAGCAAGGCTTGAAGAGATTACAGAACTTGCC-----------AAGGGTCACCTGGCTGGAGCTGGGAGTTGGTCCCTG-------GCAGGTCTGCTGCTCAGCTGCCCGCGATCATGGGACACATCTCTTCTCTCCTGCACCACAACTAATGACTTGGATGGGAGAAGCAGAACCAACATTCCTCTTCAGGCTCCTCTGGAACTAGGACTCTCTTTCATAGCATAAACCGTGTTGATTC-TTCCCTCACTTCCTGAGGCTCTGATATTTTTCATTGAGCTG--------------CCGTTTTATTTCCTCCTCTT--------------TCTCACACTTGTATCAGTCATGAATTCAGCCCCATGAGGAGATTAAAGCCAC-------TTCATTACCCTCAAGGTCTTTCCATC-GTTCCTTCTCACAAAACTCTCTGAATGCGCCACTACACAGGACT--GAAAAATGGCCTGACTTGAAGCTGGAATTTCAAGGTTGAACACATAGATGTCCTCAGTTAACTCACACGGGGCTGAAGCCGTGCACTTTCATTAAAACCAAACCCCAGGTGAGGCCCAT---GTAATTTCTGAGACACTGAGAGAACCTCTACAGGTagggattcttaagatttgtagg--------tcatgaagcccattgagaatctgatgaaagctaga---catctcgctagaaaaatgatgtaaacacaaaactatccacgttattttcaaggcatttacacacagcacatgaag--accTCCTAATAAGAGCCCTTCTGCTTTGGGGAGCGT-GTGGAGATGGGGG-GAATGGTA-CGAAGAAGACTCCAGTTCAGAAGTACTTACATGAAATCAGATTGTATTTTATGGGACCCACTGGCCATAGACTTGAACTCAACACCTTCGAGGTCAATATCTTGAGGTAAGCACCATTCTACCATGTTCCCTGTAGGAAAAGGAAGATG--------------C-AACATCATTCAAAGAAAATGGGTTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174734645 1109 + 192294377 AGGCCGAAGAAGGGCCCCTTTCGGAAATAGCTAGAAGAGACCAAATACATAGCGTGGCTCAAGATCAGAGAGGA------------------------------------------ATTTTGAGATGCATTCCTAAACAAAACAAATGAACCGTGTCTGGAGCTGTCA-ATGACAAAGCTCAGCCTCAAAGAAA---------------CAAGTA------GGCCAAGCCACTTG---ACCtcacc-----gatgagacgagcaaggcttgaagagattacagaacttgcc-----------aagggtcacctggctggagctgggagttggtccctg-------gcaggtctgctgctcAGCTGCCCGCGATCATGGGACACATCTCTTCTCTCCTGCACCACAACTAATGACTTGGATGGGAGAAGCAGAACCAACATTCCTCTTCAGGCTCCTCTGGAACTAGGACTCTCTTTCATAGCATAAACCGTGTTGATTC-TTCCCTCACTTCCTGAGGCTCTGATATTTTTCATTGAGCTG--------------CCGTTTTATTTCCTCCTCTT--------------TCTCACACTTGTATCAGTCATGAATTCAGCCCCATGAGGAGATTAAAGCCAC-------TTCATTACCCTCAAGGTCTTTCCATC-GTTCCTTCTCACAAAACTCTCTGAATGCGCCACTACACAGGACT--AAAAAATGGCCTGACTTGAAGCTGGAATTTCAAGGTTGAACACATAGATGTCCTCAGTTAACTCACACGGGGCTGAAGCCGTGCACTTTCATTAAAACCAAACCTCAGGTGAGGCCCAT---GTAATTTCTGAGACACTGAGAGAACCTCTACAGGTagggattcttaagatttgtagg--------tcatgaagcccattgagaatctgatgaaagctaga---catctcgctggaaaaatgatgtaaacacaaaactatccacg-tattttcaaggcatttacacacagcacatgaag--accTCCTAATAAGAGCCCTTCTGCTTTGGGGAGCGT-GTGGAGATGGGGG-GAATGGTA-CGAAGAAGACTCCAGTTCAGAAGTACTTACATGAAATCAGATTGTATTTTATGGGACCCACTGGCCATAGACTTGAACTCAACACCTTCGAGGTCAATATCTTGAGGTAAGCACCATTCTACCATGTTCCCTGTAGGAAAAGGAAGATG--------------C-AACATCATTCAAAGAAAATGGGTTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163406007 1109 + 180432695 AGGCCGAAGAAGGGCCCCTTTCGGAAATAGCTAGAAGAGACCAAATACATAGCATGGCTCAAGATCAGAGAGGA------------------------------------------ATTTTGAGATGCAGtcctaaacaaaacaaatgaactgtGTCCAGGGCTGTCA-ATGACGAAGCTCAGCCTCAAAGAAA---------------CAAGTA------GGCCAAGCCACTTG---ACCTCACC-----GACGAGACGAGCAAGGCTTGAAGAGATTATAGAACTTGCC-----------AAGGGTCACCTGGCTGGAGCTGGGAGTTGGTCCCTG-------GCAAGTCTGCTGCTCAGCTGCCCGCGATCATGGGACACATCTCTTCTCTCCTGCACCACAACTAATGACTTGCATGGGAGAAGCAGAACCAACATTCCTCCTTAGGCTCCTCTGGAACTAAGACTCTCTTTCGTATCATAAACCGCGTTGATTC-TTCCCTCACTTCCTGAGGCTCTGATGTTTTTCATTGAGCTG--------------ccgttttattttctcctctt--------------tctcacaCTTGTATCAGTCATGAATTCAGCCCCATGAGGAGATTAAAGCCAC-------TTCATTACCCTTAAGGTCTTTCCATT-GTTCCTTCTCACAAAACTCTCTGAATGCGCCACTACACAGGACT--AAAAAATGGCCTGACTTAAAGCTGGAATTTCAAGGTTGAACACATAGATGTCCTCAGTTAACTCACACGGGGCTGAAACTGTGCACTTTCATTAAAACCAAACCTCAGGTGAGGCCCAT---GTAATTTCTGAGACACTGAGAGAACCTCTACAGGTAGGGATTCTTAAGATTTGTAGG--------TCATGAAGCCCATTGAGAACCTGATGAAAGCTAGA---CATCTCGCTAGAAAAATGATGTAAACACAAAACTATCCATG-TATTTTCAAGGCATTTACACACAGCACATGAAG--ACCTCCTAATAAGAGCCCTTCTGCTTTGGGGAACGT-GTGGAGATGGGGG-GAATGGTA-CGAAGAAGACTCCAGTTCAGAAGTACTTACATGAAATCAGATTGGATTTTATGGGACCCACTGGCCATAGACTTGAACTCAACACCTTCGAGGTCAATATCTTGAGGTAAGCACCATTCTACCATGTTCCCTGTAGGAAAAGGAAGATG--------------C-AACATCATTCAAAGAAAATGGGTTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110434778 1108 + 127223203 AGGCCGAAGAAGGGCCCCTTTCGGAAATAGCTAGAAGAGACCAAATACATAGCGTGGCTCAAGATCAGAGAGGA------------------------------------------AGTTTGAGATGCAATCCTTAACAAAACAAATGAACTGTGTCCGGGGCTGTCA-ATGACAAAGCTCAGCCTCAAAGAAA---------------CAAGTA------GGCCAAGCCACTTG---ACCTCACC-----GACGAGACGAGCAAGGCTTGAAGAGATTATAGAACTTGCC-----------AAGGGTCACCTGGCTGGAGCTGGGAGTTGGTCCCTG-------GCAAGTCTGCTGCTCAGCTGCCCGCGATCATGGGACACATGTCTTCTCTCCTGCACCACAACTAATGACTTGCACGGGAGAAGCAGAACCAACAATCCTCTTCAGGCTCCTCTGGAACTAAGACTCTCTTTCATATCATAAACCGCGTTGATTC-TTCCCTCACTTCCTGAGGCTCTGATGTTTTTCATTGAGCTG--------------CCGTTTTATTTTCTCCTCTT--------------TCTCACACTTGTATCAGTCATGAATTCAGCCCCATGAGGAGATTAAAGCCAC-------TTCATTACCCTTAAGGTCTTTCCATT-GTTCCTTCTCACAAAACTCTCTGAATGTGCCACTACACAGGACT--AAAAAATGGCCTGACTTAAAGCTGGAATTTCAAGGTTTAACACATAGATGTCCTCAGTTAACCCACACGGGGCTGAAACTGTGCACCTTCATTAAAACCAAACCTCAAGTGAGGTCCAT---GTAGTTTCTGAGAAAGTGAGAGAACCTCTTCTTA-agggattcttgagatttgtagg--------tcatgaagcctattgagaacctgatgaaagctaga---catctcactagaaaaatgatgtcaacacaaaactatccatg-tattttcaaggcatttacacacagcacatgaag--accTCCTAACAAGAACCCTTCTGCTTTGGGGAAAGT-GTGGAGACAGGGG-GAATGGTA-CAAAGAAGACTCCAGTTCAGAAGTACTTACATGAAATCAGATTGGATTTTATGGGACCCACTGGCCATAGACTTGAACTCAACACCTTCGAGGTCAATATCTTGAGGTAAGCACCATTCTACCATGTTCCCTGTAGGAAAAGGAAGATG--------------C-AACATCATTCAAAGAAAATGGGTTA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23781143 1117 - 128169293 AAGCCAAAGAAGGGCCCCTTTCGGAAATAGCTAGAAGAGACCAAATGTGTAGTGTGGCTCAATATCAGAGAGAA------------------------------------------ATTTTGAGATCCAATCCTAAAC-AAACCAATGAACTCTGTCCGG-GCTGTAC-ATGACAAAGCTCAGCCTCAAGGTGA---------------CAGGTA------GGCCAACTCACTTG---ACCACCCC-----GGTGAAATGACCAAGGCCTGAAGAGATTATGGGACTTGCC-----------AAGGGTCACTTGGCTGGAGCCGGGACTTGGTCC-TG-------GCAAGATGGCTGCTTGGCTGCTCATGATCAT-GGACACATCTCTTCTCTCCTGCGCCACCACTAATGACTTGGATGGGAGAAGCAGAACCAACAATCCTCTTCAGGCTCCTCTGGAACTAGGACTCTCTTTCATAGCATAAAGCACAATGATTC-TTCCCTTACTTCCTGAGGCTCTGATATTTTTAACTGAGCTG--------------CCATTTTATTTCCCCCTCTT--------------TCTCACACTTGTATCAGTCATGAATTCAGCCCCATGAGGAGATTAAAGCCAC-------TTCATTACCCTTAAGTTCTTTCCATT-GTTCCTTCTCACAAAACTCTCC-AATACCCCACTGCACAGGAGTAAAAAAAATGGCCTTACTTAAAGCTGGAATTTCAAGGTTGAGCACATAGATGTCCTTGGTTAACTCACACAGGGCTGAAACTGCACACTTTCATTAAAACCAAACCTCAAGTGAGGTCCA-----TAATTTCTGAGAAAGTGAGAGAACCTCTACGGGTAGGGATTCCTAAGATTTTTAGG--------TCATGAAGCCTGTTGAGAACATGATGAATGCTAGA---CATCTCGCTAGAAAAATGATGTAAACACAAAACTAT-CATG-TATTTTCAAGGCATTTATACACGGCACATGAAC--ACCTCCTAACAAGAGCCCCTCTGATTCGGGGAAAGT-GCGGAGGTGGGGG-AAATGGTA-CGAAGAAGACTCCAGTTCAGAAGTACTTACATGAAATCAGACTGGATTTTATGGGACCCACTAGCCATAGACTTGAACTCAACACCTTCAAGGTCAATATCTTGAGGTAAGCACCATTCTACCATGTTTCCTGCAGGAAAAGAAAGATACAAGTTAAAAGAAAC-AACATCATTCAAAGAAAATGGCTTA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40422854 1024 + 149736546 AGGCCAAAGAAGGGACCCTTCCGAAAATAGCTGAAACAGACCAAATATGCACTGCGGCTCTAATTTAGGGAAGATGACttttttt--ctttttttttttgctttttttgcttttttcctttGCAATGCAATCTCATCCCAAAC-----GACCATGTTCAGAGCT--------CCAAAGCTGGGTCATAAAAG---------------------------------AAGCCATTCA---GTCTC-CC-----AAAGA-GTGGCCACGGCTCCAA--GACTCTAGAATGTGCCATCCCAGAGTGAAGGGGGGGTGGTGTAGAGTTAGCTTAAAGTCTCTAAGTCTCTACAAGCATGCAGTTCAAATGCCCACAGCCAG-AGACTGTGGTATCCTCTCTGGC---ACAACTAACAGCTTCAATGGGAGAACCAGAACCAGGGTTGACCTTCTGGCTCCTTTGGGACTCAG--TCTGTTTTCTCTCACAAATCCCAA-------TTCTCTCAGTTCCTTGGCTTCTGACAGCTCCAATGCAGCTG--------------ACATTTCACTTCTTTCTCCC--------------TTTCATGCTTGAATCAGCCTTGGTTTCAGGCCAATGCAGAGATTAAAGCTAC--------AAATTATTCTCAAAGCATATCCATT-GG--CTTCTTACAAAA--TTCAGCAAGCACCATT-TACAGGTCA--CTAAAACTGGCCTGCTTAAAGCTAGTAT-----------------------------TTAACCCACAC------------------------TAAAACCAAACCTCCC-TGAGGTTTGCTCAGTAATAGCTCAG-------------TTGTATGAGCATGGAATATTGGGAC-----------------------CCCACTGAGAACT---CCAGAGCTGGAGCCCTTCTTGCTGGGAAGCTGG-ATAAACACA-------------------CAGAAGACTTACATATACCATCTGAAGACACCTCTCGATAACA-------TGCTCGGGAGAACATAGGAGAGACGGGATCGAGTGGCA-CCAGATAG------GCTCAGAAGTACTCACATGAAATCAGACTGAACTTTATGGGACCCGCTGGCCATAGACTTGAACTCAACACCTTCAAGGTCAATATCTTGAGGTAAGCACCATTCTACCATGTTTCCTGTAGGAACAGGGGGATC-AAGTTAACAGAAACAAAAACCACTCAGAGAGAAGAG----
i mm10.chr6                C 0 C 0
s canFam3.chr16             52100679 1149 -  59632846 AGGCCAAAGAAAGGCCCCTTTCGGAAGTAGCTAGAAAGATCCAAGTGCATGGTGTGGCTCACCATCCGAGAGAGAGAAATCGTTTGGCTTTGTTTCTT------------------AATTTGAGATGCAGTCCCGAGGAAAACAAGT-AACCTTGTCCAGGGCTCTAACATGAGGAAGCTCAGCCTGAAGATGAATTTTTTTAGACCCCCAGGGGAACACTGGTCAAGCCACACACACACCCCCCCCACCAGACGGGACGACCGAGGCGCCAGAAGATGCTGGAAAGCACC-----------AAGGGTCATCCACCAAGAGCCAGGACTTGGCCTCTG-------GCAAGCCTGCTGCTCAACTGCCCATGACCAT-GGACAGATCCCTTCTCTCCTGCAACATGAC--GTGACTC--------------AAACCAAGACTCGACTTGAGGCCCTTCTGGAA-TGGTACTGTCTTAC-TAGCATGAGCCACGTTGATTCTTTCCCCCACTTCCTGAGTCTCCGATACTCTCACTAGGGCGGAGGACCAGGGCTGTCCCTCCTTTTCCCTCCCCTT--------------TCTCACACCTGTCACAGC------TGCGGCCC-----AGAAGTTCAAGCAACCTCCTGCTCCGTTACCTTGACGTTCTCCCCGTTGGCTCCTCCTCACCCGGATCTTAG---------TTACACGGGACT--ATACACCGGCCTTACTTAAAGCCGGGATTTTGGGTTCGGT----TAAAAGTCTTAAGCCAACCCAAACTGAACTGAAAGTCCACTCTTCCAATAAAGCCAGACCTCTAGTGAGGTCTA----GTATTTTCTTA-AAAGGGACAGAACCTCTGATAG------TTCTTA--ATTTGGGGGGAGGGGGATCATGAAACCCACTAAGAACCAAACAAAAGCTGGGGACCTCCTCGGGAGAAAACGGATACAAACACGAAACCACACATC-TATCTTTGGGGCATCTCCACACAGCTTCGGGAG--CCTCCCTGAT--GAGCCCTCGCGCTCCGGGGAAAGG-ATGGG---CGAGG-AAAGGGTACCGACGGGGGC----ATCCTGCCATACTTACATGAAGTCGGACTGAATTTTATGGGACCCACTGGCCATAGACTTGAACTCAACACCTTCAAGGTCAATATCCTGAGGTAAGCACCACTCCACCATGTTCCCTGTGGGAAAGGGGGGATACAAGTTAAAAGAAAC-AAAGTCATTCAGAGAAGAGGTCCTT
i canFam3.chr16            C 0 C 0

a score=261494.000000
s hg38.chr7_GL383534v2_alt     53311 106 +    119183 GTAC-AGGGCTTAGCACACATGGCTTTTCAATAAACCGACTGCTGACTCAGCCTCA-GACAGACCAGCGAGATGCTCAGA--GCTCAGCCCCTCCA----TCACTGGCAGGGGT-----------
s panTro4.chr7             143153225 106 + 161824586 GTAC-AGGGCTTAGCACACATGGCTTTTCAATAAACCGACTGCTGACTCAGCCTCA-GACAGACCAGCGAGATGCTCAGA--GCTCAGCCCCTCCA----TCACTGGCAGGGAT-----------
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138974420 106 + 157549271 GTAC-AGGGCTTAGCACACATGGTTTTTCAATAAACCGACTGCTGACTCAGCCTGA-CACAGACCAGCGAGATGCTCAGA--GCTCAGTTCCTCCA----TCACCGGCAGGGGT-----------
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93095107 106 + 110113093 GTAC-AGGGCTTAGCACACATGGCTTCTCAATAAGCCGACTGCTGACTCAGGCTGA-CACAGACCAGCGAGATGTTCACA--GCTCAGCTTCTCCA----TCACCCACAGGGGT-----------
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180990007 106 + 198365852 GTAC-AGGGCTTAGCACACATGGCTTCTCAATAAACCGACTGCTGACTCAGCCTGA-CACAGACCAGCGAGATGCTCAGA--GCTCAGCTCCTCCA----TCACCGGCAGGGGT-----------
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174735754 106 + 192294377 GTAC-AGGGCTTAGCACACATGGCTTCTCAATAAACCGACTGCTGACTCAGCCTGA-CACAGACCAGCGAGATGCTCAGA--GCTCAGCTCCTCCA----TCACTGGCAGGGGT-----------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163407116 106 + 180432695 GTAC-AGGGCTTAGCACACATGGCTTCTCAATAAACCGACTGCTGACTCAGCCTGA-CACAGACCAGCGAGATGCTCAGA--GCTCAGCTCCTCCA----TCACCGGCAGGGGT-----------
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110435886 106 + 127223203 GTAC-AGGGCTTAGCACACATGGCTTCTCAATAAACCGACTGCTGACTCAGCCTGA-CACAGACCAGCGAGATGCTCAGA--GCTCAGCTCCTCCA----TCACCGGCAGGGGT-----------
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40423878  79 + 149736546 ---C-ATAGCCCAGCATACATCGGTACTCAG-AAATGTGCTGTT-CCTCACACTGATCAAGAACTACTGAGATGCTCAGA----TGAAC------------------------------------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52101828 113 -  59632846 GTCCAAGAGCTGAGGGTCTATGGCTACCCGATAAACGCGCTGTTGAC-----CTGG-------CCACCAAGACGCTCCGGCGGGTCATCTCATCTACCAGCCACCCGCCGGCACTCCTCCCCAGT
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23782260   0 - 128169293 C

a score=822836.000000
s hg38.chr7_GL383534v2_alt     53417 251 +    119183 GACGCCGGAGGACGTGGAGGTGGACACTAAAAGAACCTCCCATTTCTGCCCTCA----AAC-ACTGTTCTCCTCCCTCATGAGGATGCTGCGTTTGCTTCTGTCATTCTGCTCAACCACTTCCAAA---TCTGCTTTTTGTAGCCTCACTTCTCTGCATG---------------TTTTTTTAACCTTCCACCCTCATTTCCTTATCTTGTGTTCTCCCCTTAATCCCTTGAGATCTTGAT--------TCT-ATCT----------ATAGCCACTAATGACTGGGAAAAAAT
s panTro4.chr7             143153331 251 + 161824586 GACGCCGGAGGACGTGGAGATGGACACTAAAGGAACCTCCCATTTCTGCCCTCA----AAC-ACTGTTCTCCTCCCTCATGAGGATGCTGCCTTTGCTTCTGTCATTCTGCTCAACCACTTCCAAA---TCTGCTTTTTGCAGCCTCACTTCTCTGCATG---------------TTTTTTTAACCTTCCACCCTCATTTCCTTATCTTGTGTTCTCCCCTTAATCCCTTGAGATCTTGAT--------TCT-ATCT----------ATAGCCACTAATGACTGGGAAAAAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138974526 246 + 157549271 GACGCCAGAGGATGTGGAGATGGACACTAAAGGAACCTCCCATCTCTGCCCTCA----AAT-ACTGTTCTCCTCCCTCATGA----GCTGCCTTTGATTCTGTCATTCTGCTCAACCACTTTCAAG---TCTGTCTTTTGCGGCCTCACTTCTCTCCATG---------------TTTTTTTAACCTTCCGCCCTCATTTCCTTATCTTGTGTTCTCTCCTTAATCCCTTGAGATCTTGAT--------TCT-ATCT----------ATAGCCACTAATGACTGGG-AAAAAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93095213 247 + 110113093 GATGCCGGAGGACTTGGAGATGGACACCGAAGGAATCTCCCATCTCTGCCCCCA----AAC-ACTGTT---CTCCCTCCTGAGGATGCTGCCTTTGATTCTGTCATTCTGCTCAACCACTTCCAAA---TCTGCCTTTCGCGGCCTCACTTCTCCGCATG---------------TTTTTTTAACCTTCCGCCCTCATTTCCTTATCTTGTGTTCTTTCCTTAATCCCTTGAGATCTTGAT--------TCT-ATCT----------ATAGCCACTAATGACTGGG-AAAAAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180990113 250 + 198365852 GACACCAGAGGACCTGGAGACGGACACTGAAGGAACCTCCCATCTCTGCCCTCA----AAC-ACTGTTCTCCTCCCTCAGAAGGATGCTGCCTTTGATTCTGTCATTCTGCTCAACCACTTCCAAA---TCTGCCTTTCGTGGCCTCACTTCTCTGCATG---------------TTTTTTTAACCTTACGCCCTCATTTCCTTATCTCGTGTTCTCTCCTTAATCCCTTGAGATCTTGAT--------TCT-ATCT----------ATAGCCACTAATGACTGGG-AAAAAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174735860 250 + 192294377 GACACCAGAGGACCTGGAGACGGACACTGAAGGAACCTCCCATCTCTGCCCTCA----AAC-ACTGTTCTCCTCCCTCAGAAGGATGCTGCCTTTGATTCTGTCATTCTGCTCAACCACTTCCAAA---TCTGCCTTTCGTGGCCTCACTTCTCTGCATG---------------TTTTTTTAACCTTACGCCCTCATTTCCTTATCTCGTGTTCTCTCCTTAATCCCTTGAGATCTTGAT--------TCT-ATCT----------ATAGCCACTAATGACTGGG-AAAAAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163407222 250 + 180432695 GACACCAGAGGACCCGGAGATGGACACTGAAGGAACCTCCCATCTCTGCCCTCA----AAC-ACTGTTCTCCTCCCTCAGAAGGATGCTGCCTTTGATTCTGTCATTCTGCTCAACCACTACCAAA---TCTGCCTTTCGTGGCCTCACTTCTCTGCATG---------------tttttttAACCTTACGCCCTCATTTCCTTATCTCGTGTTCTCTCCTTAATCCCTTGAGATCTTGAT--------TCT-ATCT----------ATAGCCACTAATGACTGGG-AAAAAt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110435992 250 + 127223203 GACACCAGAGGATCCGGAGATGGACACTGAAGGAACCTCCCATCTCCGCCCTCA----AAC-ACTGTTCTCCTCCCTCAGGAGGATGCTGCCTTTGATTCTGTCATTCTGCTCAACCACTTCCAAA---TCTGCCTTTTGTGGCCTCACTTCTCTGCATG---------------TTTTTTTAACCTTACGCCCTCATTTCCTTATCTCGTGTTCTCTCCTTAATCCCTTGAGACCTTGAT--------TCT-ATCT----------ATAGCCACTAATGACTGGG-AAAAAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23782260 250 - 128169293 GACGCCAGAGGACCCAGAGATGGACACTAAAGGAATCTCCCATCTCTGCCCTCAAATGAAC-ACTGTTCTCCTCTCTCATGAAGACACTGCCT----TTCTATCATTCTGCTCAACCACTTCCAAA---TCTGCCTTTCATGGCCTCACTTCTCTGCATA---------------TTTTTTTAACCTTCTGCCCTCATTTCCTTATCTTACCTTCTCTCCTTAATCCCTTGAGATCTTGAT--------TCT-ATCT----------ATAGCCACTAATGACTGGG-AAAAAT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40423957 249 + 149736546 TACACCAGAGGACCAGGAGG-GGGCAGTAGAAGGACCT--CATCCCAG-CTTCA----GAT-TCAGTATCCTTTGAGCA-------GCTCCCT-------------TCTGGTCACCC----CCAAA---TCTTCCTCTCATGGCTTCATCTCTCCAAGTAGatttatttatttatttatttaAACCTTAAGCTCCCATTTCTTCATCCTATACTGTTACCTCAATCTCTTGAGATTCTATT--------TTTAATCTTACCATCCAAATAGCCACTAATGTCTGACCAAatat
i mm10.chr6                C 0 I 132
s canFam3.chr16             52101941 245 -  59632846 CACTCTGCAGGGCCAGGAGACGGGCCTTCAAGGAGCCTTCCAGCTCTGCCTTGA----GCTGAGCAGTCTCCTGTCCAGCAAGGATACGGTCTCTGGTGGGTCCATTCTGTGAAGTCATTTCCAAACCTCCTTCCTTTCACAGCCTCACTCCCAAGGGTG---------------TGTTTTTACCCTCTTTTCTCCATTTCCTT-------------TCCCTGACCCCCTGAGATCACGCTCCATCTTGTCC-TCCT----------AGAGCTACCGAC-TCTGGC-AAA---
i canFam3.chr16            C 0 C 0

a score=20826.000000
s hg38.chr7_GL383534v2_alt     53668 6 +    119183 -CCCAAA
s panTro4.chr7             143153582 6 + 161824586 -CCCAAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138974772 6 + 157549271 -CCCAAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93095460 6 + 110113093 -CCCAAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180990363 6 + 198365852 -CCCAAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174736110 6 + 192294377 -CCCAAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163407472 6 + 180432695 -cccaaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110436242 6 + 127223203 -CCCAAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23782510 6 - 128169293 -CCCAAA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52102186 6 -  59632846 CCCCAA-
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40424206 132 + 149736546 I

a score=844295.000000
s hg38.chr7_GL383534v2_alt     53674 241 +    119183 ACATTTTTTA-----AATTC-TCATTCTCGTTTACCTCTAGGTAGCATTTGCTAATTCCTCAAACATTTCTCCTCTTTTTCCTGGATTTTCATGATAGAATACTATTTTAGTGCTTTTCCTACCTCTCTGACCAATGTAACTCTGTTTCCCCTCC------TCTCTCTCTCCTCTCTAAGTGAGGTCCTTCTTCAAGGGACAATGATA-----TTTGCTTCCAGAATTTTGGGactcattcactcat--------cattgattatt
s panTro4.chr7             143153588 241 + 161824586 ACATTTTTTA-----AATTC-TCATTCTCGTTTACCTCTAGGTAGCATTTGCTAATTCCTCAAACATTTCTCCTCTTTTTCCTGGATTTTCATGATAGAATACTATTTTAGTGCTTTTCCTACCTCTCTGACCAATGTAACTCTGTTTCCCCTCC------TCTCTCTCTCCTCTCTAAGTGAGGTCCTTCTTCAAGGGACAATGATA-----TTTGCTTCCAGAATTTTGGGACTCATTCACTCAT--------CGTTGATTATT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138974778 241 + 157549271 ACATTTTTTA-----AATTC-TCATTCTCATTTACCTCTAGGTAGCATTTGCTAATTCCTCAAACATTTCTCCTCTTTTTCCTAGATTTCCATGATAGAATACTATTTTAATGCTTTTCCTACCTCTCTGACCAACGTAACTCTGTTTCCCTCCC------TCTCTCTCTCCTCTCTAAGTGAGGTCCTTCTTCAAGGGACAATGATA-----TTTGCTTCCAGAATTTTGGGactcattcactcat--------cattgattatt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93095466 241 + 110113093 ACATTTTTTA-----AATTC-TCATTCTCGTTTACCTCTAGGTAGCATTTGCTAATTCCTCACACATTCCTCCTCCTTTTCCTAGATTTCCATGATAGAATACTATTTTAGTGCTTTTCCTACCTCTCTGACCAATGTAActctgtttccctccc------tctctctctcctctctAAGTGAGGTCCTTCTTCAAGGGCCAATGTTA-----TTTGCTTCCAGAATTTTGGGACTCATTCACTCAT--------CATTAATTATT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180990369 237 + 198365852 ACATTTTTTA-----AATTC-TCATTCTCATTCACCTCTAGATAGGATTTGCTAATTCCTCAAACATTTCTCCTCTTTTTCCTAGATTTCCATGATAGAATACTATTTTTGTGCTTTTCCTACCTGTTTGACCAATGTAACTCTGTTTCCCTCCC------CCTCTCTC----TCCTAAGTGAGGTCCTTCTTCAAGGGCCAATGATA-----TTTGCTTCCACAATTCTAGGACTCATTCACTCAT--------CATTAATTATT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174736116 237 + 192294377 ACATTTTTTA-----AATTC-TCATTCTCATTCACCTCTAGATAGGATTTGCTAATTCCTCAAACATTTCTCCTCTTTTTCCTAGATTTCCATGATAGAATACTATTTTAGTGCTTTTCCTACCTGTTTGACCAATGTAACTCTGTTTCCCTCCC------CCTCTCTC----TCCTAAGTGAGGTCCTTCTTCAAGGGCCAATGATA-----TTTGCTTCCACAATTCTAGGACTCATTCACTCAT--------CATTAATTATT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163407478 237 + 180432695 acatttttta-----aattc-tcattctCATTCACCTCTAGATAGGATTTGCTAATTCCTCAAacatttctcctctttttcctagATTTCCATGATAGAATACTATTTTAGTGCTTTTCCTACCTCTTTGACCAATGTAACTCTGtttccctccc------cctctctc----tcctaAGTGAGGTCCTTTTTCAAGGGCCAATGATA-----TTTGCTTCCACAATTCTGGGACTCATTCACTCAT--------CATTAATtatt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110436248 239 + 127223203 ACATTTTTTA-----AACTC-TCATTCTCATTCACCTCTAGGTAGGATTTGCTAATTCCTCAAACGTTTCTCCTCTTTTTCCCAGATTTCCATGATAGAATACTATTTTAGTGCTTTTCCTACCTGTTTGACCAGTGTAActctgtttccctccc------tctctctc--ctctctAAGTGAGGTCCTTCTTCAAGGGCCAATGATA-----TTTGCTTCCAGAATTCTGGGactcattcactcat--------cattaattatt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23782516 232 - 128169293 ACATTTTCAA-----AATTC-TCATTTCCATTTACCTCTGGGTAGCATTTGCTAATCCCTCAAACATTTCTCCTCTTTTTCCTAGATTTCCGTGACAGAATACTATTTTGGTGCTTTTCCTACCTCTCTGATTAATGTAATTCTGTTTCCCTCCT------TCTCTCTC-----------TTAAGTCCTTCTTCAAGGTCCAATGATA---TTTTTGCTTCCAGAATTTGGGGACTCATTCACTCAT--------CATTAATTATT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40424338 222 + 149736546 atatattata-----tatTCGTCATTATCACTGACCTCTTTGTGTTATTTGCTAATTCCTCAAAA----CTCCTCTTTCTCTT-GACTTCCTTGAGAGGATGTAATTCTGGCTCTTCTCCTAC---TCTGTGCAGTGTAGCT-------CATCCC------TCTC-CTC--------ACATGTGG-CCATCCTCAAGAACCAACTATC-AGCCTTCACCTCAGGAATTCTGGGACTCATTCACTCCT-------GAACTGATTTCT
i mm10.chr6                I 132 C 0
s canFam3.chr16             52102192 261 -  59632846 ACTCCTTTTATTTTTGATTC-ACATTTTCATTGACCTTTTTGCAGCAGTTGAGAATTCCTCAAAAATTTCT--TCTTTTTCCTTGATTCCCATGATAGAATACTATCTTGGTTCTTTTCCTACTTCTCTGATCTAGGTAGCT--GTTTCCTTCCCGAATTTTTTCTCCTCTCTCCCTAGGTGAGGCCCACATCCAAAGTTCAGCCATCCATTCTTTACTTCCAGAACTTTGGCGCTCACTCAGTCATTCAGTCAGCATTAATTACT
i canFam3.chr16            C 0 I 549

a score=428922.000000
s hg38.chr7_GL383534v2_alt     53915 136 +    119183 cagtttctcctgagctagatgctggagatacaaagtccctgacctcagtgagattagattccagagagaa----atga-ggagagctagaggagatcagcagttacagtgcagtgggatcaatgttatgacagaggataag
s panTro4.chr7             143153829 136 + 161824586 CAGTTTCTCCTGAGCTAGATGCTGGAGATACAAAGTCCCTGACCTCAGTGAGATTAGATTCCAGAGAGAA----ATGA-GGAGAGCTAGAGGAGATCAGCAGTTACAGTGCAGTGGGATCAATGTTATGACAGAGGATAAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975019 136 + 157549271 cagtttctcctgagctagatgctggagatacaaagtccctgacctcagtgagattagattccagaaagaa----atga-ggagaactagaagagatcagcagttacagtacagtgggatcaatgttataacagaggataag
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93095707 136 + 110113093 CAGTTTCTCCCGAGCTAGACGCTGGAGATACAAAGTCCCTGACCTCAGTGAGATTAGATTCCAGAGAGAA----ATGA-GGAGAGCTAGAGGAGATCAGCAGTTACAGTGCAGGGGGATCAATGTTATGACAAAGGATAAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180990606 136 + 198365852 TCATTTCTCCTGAGCCAGATGCTGGAGATACAAAATCCCTGACCTCATTGAGATTAGATTCTTGAGAGAA----ATGA-GGAGATCTAGAGGAGATTAGCAGTTATAGTGCAGGGGGATCAATGTTATGACAGAGGATAAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174736353 136 + 192294377 TCATTTCTCCTGAGCCAGATGCTGGAGATACAAAATCCCTGACCTCATTGAGATTAGATTCTTGAGAGAA----ATGA-GGAGATCTAGAGGAGATTAGCAGTTATAGTGCAGGGGGATCAATGTTATGACAGAGGATAAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163407715 136 + 180432695 tggtttctcctgagcCAGATGCTGGAGATACAAAATCCCTGACCTCAGTGAGATTAGATTCCTGAGAGAA----ATGA-GGAGATCTAGAGGAGATTAGCAGTTATAGTGCAGGGGGATCAATGTTATAACAGAGGATAAg
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110436487 136 + 127223203 tggtttctcctgagccagatgctggagatacaaagTCCCTGACCTCAGTGAGATTAGATTCCGGAGAGAA----ATGA-GGAGATCTAGAGGAGATGAGCAGTTATAGTGCAGGGGGATCAATGTTAGGACAGAGGATAAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23782748 134 - 128169293 CGGTTTCTCCTGAGCTAGATGCTGGAGATGCAAAGCTCCTGACCTCAGTGAGATTAGATTCCAGAGAG------ATGA-GGAGAGCTAGAGGAGACCAGCAGTTACAGTTCAGAGGGATCAATGTTATGACAGAGGGTAAA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40424560 124 + 149736546 GGGTTTCT---AAGCTTGGTGTTGGAAACA---------TGACCAGAGGGAGATGAGAGTCTAAAGCTAACAGGATGACAGAGAT-----GAAGACCAGCAGTTGCAGCTCAGTAAGGTGACTTCTATGACAGAAGGTAGG
i mm10.chr6                C 0 I 22
e canFam3.chr16             52102453 549 -  59632846 I

a score=57892.000000
s hg38.chr7_GL383534v2_alt     54051 21 +    119183 gtgcGAttttttttttttttt
s panTro4.chr7             143153965 21 + 161824586 GTGAGAttttttttttttttt
i panTro4.chr7             C 0 I 3
s ponAbe2.chr7             138975155 21 + 157549271 gtgcgattttttttttttttt
i ponAbe2.chr7             C 0 I 5
s nomLeu3.chr13             93095843 21 + 110113093 GTGGGAttttttttttttttt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180990742 21 + 198365852 GTGTGATTTTTTTTTTTTTTT
i rheMac3.chr3             C 0 I 298
s macFas5.chr3             174736489 20 + 192294377 GTGTGAtttttttttttttt-
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163407851 21 + 180432695 gtgcgattttttttttttttt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110436623 21 + 127223203 GTGTGAttttttttttttttt
i chlSab2.chr21            C 0 I 20
s calJac3.chr8              23782882 21 - 128169293 GTGAGGtttgttttttttttt
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40424684 22 + 149736546 I
e canFam3.chr16             52102453 549 -  59632846 I

a score=205055.000000
s hg38.chr7_GL383534v2_alt     54072 96 +    119183 ctcgagactgagtttcactttgtcgcccaggctggagtgcagtggcacaatctcgggtcactgcaagctccacctcccaggttcaaggcgattctc
s panTro4.chr7             143153989 96 + 161824586 cttgagactgagtttcactttgtcgcccaggctggagtgcagtggcacaatctcgggtcactgcaagctccacctcccaggttcaaggcgattctc
i panTro4.chr7             I 3 C 0
s ponAbe2.chr7             138975181 96 + 157549271 tttgagactgagtctcactttgtcgcccaggctggagtgcagtggcacaatctcgggtcactgcaagctccacctcccaggttcaaggcgatactc
i ponAbe2.chr7             I 5 C 0
s nomLeu3.chr13             93095864 95 + 110113093 -ttgagacagagtctcactttgtcgcccaggctggagtgcagtggcgcaatctcgggtcactgcaagctccacctcccaggttcaaggcgattctc
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174736509 95 + 192294377 -ttgagacggagtctcactttgttgcccaggctggagtgcagtggcacaatctcgggtcactacaagctccacctcccaagctcaaggcgattctc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163407872 95 + 180432695 -ttgagacggagtctcactttgttgcccaggctggagtgcagtggcacaatctcgggtcactacaagctccacctcccaagctcaaggcgattctc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110436664 95 + 127223203 tttgagacggagtctcactttgtcgcccaggctggagtgaaatggcacgattttggctcactgcaacctccacctccccggttcaa-gcgattctc
i chlSab2.chr21            I 20 I 19
s calJac3.chr8              23782903 91 - 128169293 ----agatggagtctcactttgtcacccaggctggagcacagtggcatgattttggcatactggaacctccacctccagggttcaa-gtgattctc
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40424684 22 + 149736546 I
e canFam3.chr16             52102453 549 -  59632846 I
e rheMac3.chr3             180990763 298 + 198365852 I

a score=50632.000000
s hg38.chr7_GL383534v2_alt     54168 30 +    119183 ctgcctcagcctcccacgtagctgggatta
s panTro4.chr7             143154085 30 + 161824586 ctgcctcagcctcccacgtagctgggatta
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975277 30 + 157549271 ctgcctcagcctcccacgtagctgggatta
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93095959 30 + 110113093 ctgcctcagcctcccgagtagctgggacta
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174736604 30 + 192294377 ctgcctcagcctcccgagtagctgagacta
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163407967 30 + 180432695 ctgcctcagcctcccgagtagctgagacta
i papAnu2.chr3             C 0 M 50
s calJac3.chr8              23782994 30 - 128169293 ctgcctcaccctcccaagcagctgggactc
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40424684 22 + 149736546 I
e canFam3.chr16             52102453 549 -  59632846 I
e chlSab2.chr21            110436759 19 + 127223203 I
e rheMac3.chr3             180990763 298 + 198365852 I

a score=17170.000000
s hg38.chr7_GL383534v2_alt     54198 17 +    119183 caggcgcataccagcac
s panTro4.chr7             143154115 17 + 161824586 caggcgcataccagcac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975307 17 + 157549271 caggtgcataacagcac
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93095989 17 + 110113093 caggcgcataccagcac
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174736634 17 + 192294377 caggtgtgtaccaccac
i macFas5.chr3             C 0 C 0
s calJac3.chr8              23783024 17 - 128169293 taggtgcccaccaccac
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40424684 22 + 149736546 I
e canFam3.chr16             52102453 549 -  59632846 I
e chlSab2.chr21            110436759 19 + 127223203 I
e papAnu2.chr3             163407997 50 + 180432695 M
e rheMac3.chr3             180990763 298 + 198365852 I

a score=139075.000000
s hg38.chr7_GL383534v2_alt     54215 186 +    119183 actcggctaatttttttttttttttttttt----gagacagagtcttgctcttgtcacccaggctggagtgcagtggcgcgatctcggctcaatgcaagctccgcctcccaggttcatgccattctcccgcctcagcctccccagtagctgggactacaggcacctgccaccaggcccggctaa-tttttt
s panTro4.chr7             143154132 189 + 161824586 actcggctaatttttttttttttttttttt-tttgagacggagtcttgctcttgtcacccaggctggagtgcagtggcgcgatctcggctcaatgcaagctccgcctcccaggttcgcgccattctcccgcctcagcctccccagtagctgggactacaggcacccgccaccaggcccggctaa-tttttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975324 180 + 157549271 actcggctaatttttttttttttt----------gagatgtagtctcactcttgtcacctagactggagtgcagtggcgcgatctcggctcagtgcaagctccgcctcccaggttcacaccatcctcccgcctcagcctccccagtagctgggactacaggcacccaccaccacgccctgctaa-tttttt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096006 185 + 110113093 actcggttattttttttttttttttttt------gagacggagtctcgctcttgtcgcccaggctggagtacagtgatgcgatctcagctcactgcaagctccgcctcccgggttcataccattctcccgcctcagcctccccagtagctgggactacaggcgcccgccaccacacccagctaattttttt
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174736651 187 + 192294377 acccagctttttttttttttttttttttttttttgagacagagtctcgctc-tgtcacccaggctggagtgcagtggcacgatcttggctcaccgcaagctccgtct-ccgggttcacgccattctcccgcctcagcctccccagtagctgggactacaggcgcccgccaccaggcccagctaa-ttttt-
i macFas5.chr3             C 0 C 0
e mm10.chr6                 40424684  22 + 149736546 I
e canFam3.chr16             52102453 549 -  59632846 I
e calJac3.chr8              23783041   0 - 128169293 C
e chlSab2.chr21            110436759  19 + 127223203 I
e papAnu2.chr3             163407997  50 + 180432695 M
e rheMac3.chr3             180990763 298 + 198365852 I

a score=65457.000000
s hg38.chr7_GL383534v2_alt     54401 128 +    119183 gtatttttagtggagacggggtttcaccatgttagccaggatggtctcaatctcctgaccttgtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgcacccggccat
s panTro4.chr7             143154321 128 + 161824586 gtatttttagtggagaccgggtttcgccatgttagccaggatggtctcgatctcctgaccttgtgatccgcccacctcagcctcccaaagtgctgggattacaggcatgagccaccgcacccggccat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975504 128 + 157549271 gtatttttagtggagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccacctcagtctcctgaagtgctgggattacaggggtgagccaccgcacccagccat
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096191 128 + 110113093 gtatttttagtagagacggggtttcatggtgttagccaggatggtctcaatctcctgacctcgtgatccacccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgagcccggccac
i nomLeu3.chr13            C 0 C 0
e mm10.chr6                 40424684  22 + 149736546 I
e canFam3.chr16             52102453 549 -  59632846 I
e calJac3.chr8              23783041   0 - 128169293 C
e chlSab2.chr21            110436759  19 + 127223203 I
e papAnu2.chr3             163407997  50 + 180432695 M
e macFas5.chr3             174736838   0 + 192294377 C
e rheMac3.chr3             180990763 298 + 198365852 I

a score=5532.000000
s hg38.chr7_GL383534v2_alt     54529 12 +    119183 gcccagcta-----------ttt
s panTro4.chr7             143154449 12 + 161824586 gcccagcta-----------ttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975632 23 + 157549271 gtccagctatttttttttttttt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096319 22 + 110113093 gcccaacta-atttttttttttt
i nomLeu3.chr13            C 0 C 0
s calJac3.chr8              23783041 12 - 128169293 gcccagcta-----------att
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40424684 22 + 149736546 I
e canFam3.chr16             52102453 549 -  59632846 I
e chlSab2.chr21            110436759 19 + 127223203 I
e papAnu2.chr3             163407997 50 + 180432695 M
e macFas5.chr3             174736838  0 + 192294377 C
e rheMac3.chr3             180990763 298 + 198365852 I

a score=7377.000000
s hg38.chr7_GL383534v2_alt     54541 5 +    119183 ttttt
s panTro4.chr7             143154461 5 + 161824586 ttttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975655 5 + 157549271 ttttt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096341 5 + 110113093 ttttt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180991061 5 + 198365852 ttttt
i rheMac3.chr3             I 298 C 0
s chlSab2.chr21            110436778 5 + 127223203 ttttt
i chlSab2.chr21            I 19 C 0
s calJac3.chr8              23783053 2 - 128169293 ---tt
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40424684 22 + 149736546 I
e canFam3.chr16             52102453 549 -  59632846 I
e papAnu2.chr3             163407997 50 + 180432695 M
e macFas5.chr3             174736838 0 + 192294377 C

a score=77977.000000
s hg38.chr7_GL383534v2_alt     54546 34 +    119183 gtatttttagtagagatggggtttcaccaagttg
s panTro4.chr7             143154466 34 + 161824586 gtatttttagtagagatggggtttcaccaagttg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975660 34 + 157549271 gtatttctagtagagatgtggtttcaccaagttg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096346 34 + 110113093 gtatttttggtggagatggggtttcgccatgtgg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180991066 34 + 198365852 gtatttttagtagagatggggtttcaccatgttg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174736838 34 + 192294377 gtatttttagtagagatggggtttcaccatgttg
i macFas5.chr3             C 0 C 0
s chlSab2.chr21            110436783 34 + 127223203 gtatttttagtagagacggggtttcaccatgttg
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23783055 34 - 128169293 gtatttttagtagagacggggtttcaccatgtta
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40424684 22 + 149736546 I
e canFam3.chr16             52102453 549 -  59632846 I
e papAnu2.chr3             163407997 50 + 180432695 M

a score=305750.000000
s hg38.chr7_GL383534v2_alt     54580 100 +    119183 cccaggctggtcttcaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgttgggattacaggtgtgagccaccgctctaggccAAAGTA
s panTro4.chr7             143154500 100 + 161824586 cccaggctggtctccaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgttgggattacaggtgtgagccaccgctccaggccAAAGTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975694 100 + 157549271 cccaggctggtctccaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgttgggattacaggcgtgagccaccgctccaggccaaagta
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096380 100 + 110113093 cccaggctggtctccaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgttgagattacaggcatgagccaccgctccaggccAAAGTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180991100 100 + 198365852 cctaggctggtctccaactcctggcctcaggtgaatcacctgcctcagcctcccaaagtgttgggattacaggcgtgagccaccaccccaggccAAGGTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174736872 100 + 192294377 cctaggctggtctccaactcctggcctcaggtgaatcacctgcctcagcctcccaaagtgttgggattacaggcgtgagccaccaccccaggccAAGGTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163408047 100 + 180432695 cctaggctggtctccaactcctggcctcaggtgaatcacctgcctcagcctcccaaagtgttgggattacaggcgtgagccaccaccccaggccaAGGTA
i papAnu2.chr3             M 50 C 0
s chlSab2.chr21            110436817 100 + 127223203 cccaggctggtctccaactcctggcctcaggtgaatcacctgcctcagcctcccaaagtgttgggattacaggcgtgagccaccaccccaggccAAGGTA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23783089 100 - 128169293 ctcaggctagtctcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggcacgagccacagggcctggccAAGGTG
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40424684  22 + 149736546 I
e canFam3.chr16             52102453 549 -  59632846 I

a score=38970.000000
s hg38.chr7_GL383534v2_alt     54680 13 +    119183 GGATTTTAAA-------AGT
s panTro4.chr7             143154600 13 + 161824586 GGATTTTAAA-------AGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975794 13 + 157549271 ggattttaaa-------agt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096480 13 + 110113093 AGATTTTAAA-------AGT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180991200 13 + 198365852 GGATTTTAAA-------AGT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174736972 13 + 192294377 GGATTTTAAA-------AGT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163408147 13 + 180432695 GGATTTTAAA-------AGT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110436917 12 + 127223203 GGA-TTTAAA-------AGT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23783189 13 - 128169293 GGATTTTAAA-------TGC
i calJac3.chr8             C 0 I 4
s canFam3.chr16             52103002 20 -  59632846 ggattttagaacgaagcagt
i canFam3.chr16            I 549 I 1
e mm10.chr6                 40424684 22 + 149736546 I

a score=582861.000000
s hg38.chr7_GL383534v2_alt     54693 153 +    119183 ACAAGCATGCCTCGGGCTGCGGGAATCAGGGAACTACACAATAGCAGTGTTATCTAGAGTCTTGAGAGAACACTATAGAATACTCCCTGTTGTTTTCATGCAT-ATTCAAAAGGGTTTAAAGC-AAAACACTAAGCTATTTGTGAGATTTCATTT
s panTro4.chr7             143154613 153 + 161824586 ACAAGCATGCCTCGGGCTGCGGTAATCAGGGAACTACACAATAGCAGTGTTATCTGGAGTCTTGAGAGAACACTATAGAATACTCCCTGTTGTTTTCATGCAT-ATTCAAAAGGGTTTAAAGC-AAAACACTAAGCTATTTGTGAGATTTCATTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975807 153 + 157549271 acaagcatgcctcgggctgcgggaatcagggaactacacaatagcagtgtcatctggagtcttgagagaACACTACAGAATACTCCCTGTTGTTTTCATGCAT-ATTCAAAAGGGTTTAAAGC-AAAACACTAAGTTACTTGTGAGATTTCATTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096493 153 + 110113093 ATAAGCATGCCTCAGGCTGCGGGAATCAGGGAACTACACAATAGCAGTGTTATCTGGAGTCTTGAGAGAACACTATAGAATACTCCCTGTTGTTTTCATGCAT-ATTCAAAAGGGTTTAAAGC-AAAACACTAAGCCACTTGTGAGATTTCATTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180991213 153 + 198365852 ACAAGCATGCCTCAGGCTGTGGGAATCAGGGAACTACACAATAGCAGTGTTATCTGGAGTCTTGAGAGAATGCTATAGAATACTCCCTTTTGTTTTCATGCAT-ATTCAAAAGGGTTTAAAGC-AAAACACTAAGCTACTTGTGAGATTTCATTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174736985 153 + 192294377 ACAAGCATGCCTCAGGCTGTGGGAATCAGGGAACTACACAATAGCAGTGTTATCTGGAGTCTTGAGAGAATGCTATAGAATACTCCCTTTTGTTTTCATGCAT-ATTCAAAAGGGTTTAAAGC-AAAACACTAAGCTACTTGTGAGATTTCATTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163408160 153 + 180432695 ACAAGCATGCCTCAGGCTGTGGGAATCAGGGAACTACACAATAGCAGTGTTATCTGGAGTCTTGAGAGAATGCTATAGAATACTCCCTTTTGTTTTCATGCAT-ATTCAAAAGGGTTTAAAGC-AAAACACTAAGCTACTTGTGAGATTTCATTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110436929 152 + 127223203 ACAAGCATGCCTCAGGCTGCGGGAATCAGGGAACTACACAATAGC-GTGTTATCTGGAGTCTTGAGAGAATACTATAGAATACTCCCTGTTGTTTTCATGCAT-ATTCAAAAGGGTTTAAAGC-AAAACACTAAGCTACTTGTGAGATTTCATTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23783206 153 - 128169293 ACAAGCATGCTTCAGGCTATGGGAATCAGGGAACTACACAAAAGCACTGTTATCCAGAGTCTTGAGAGAATACTACACAATACTCCCTGCTGTTCTCATGCAT-ATTCAAAAGGATTTAAAGC-AAAACACTAAGCTACCTGTGAGATTTCATTT
i calJac3.chr8             I 4 C 0
s mm10.chr6                 40424706 141 + 149736546 ATGAGTGTGCCTGAGACAGAGGGGAGGAGAGCACTGCACA--------GTTAGCTATAGG-TGGGCCCAATATCCTAGA--AATCTCTTCTGTTTT-GTGCAT-ATTCAAATGTTTCCAAAGT-GAAAGACTAAGTAACTTGCGAGATTTCATTT
i mm10.chr6                I 22 C 0
s canFam3.chr16             52103023 155 -  59632846 atgagcatccatcagaccgagggaatcagagagaggcACAATAACAGTGTTACCCAGACACTTGACAAAACGGTATGGAATATTCCCTACCGTTTTCTTGCATAATTCAAAATATTTCGAAATAAAAATACTAAGCTACATGTGAGATTTCACCT
i canFam3.chr16            I 1 I 987

a score=122736.000000
s hg38.chr7_GL383534v2_alt     54846 35 +    119183 CAGAACAAACTTCTTATTAACACTCCAAATCCTAA
s panTro4.chr7             143154766 35 + 161824586 CAGAACAAACTTCTTATTAACACTCCAAATCCTAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975960 35 + 157549271 CAGAACAAACTTCTTATTAACACCCCAAATCCTAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096646 35 + 110113093 CAGAACAAACTTCTTATTAACACTCCAAATCCTAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180991366 35 + 198365852 CAGAACAAACTTCTTATTAACACTCCAAATCCTAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174737138 35 + 192294377 CAGAACAAACTTCTTATTAACACTCCAAATCCTAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163408313 35 + 180432695 CAGAACAAACTTCTTATTAACACTCCAAATCCTAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110437081 35 + 127223203 CAGAACAAACTTGTTATTAACACTCCAAATCCTAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23783359 35 - 128169293 CAGAACCAACTTCTTATTAACACTCCAAATCCTAA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40424847 32 + 149736546 TTGAGCAAAT---GTATTAGCACGCCAAGTCCCAG
i mm10.chr6                C 0 C 0
e canFam3.chr16             52103178 987 -  59632846 I

a score=833937.000000
s hg38.chr7_GL383534v2_alt     54881 238 +    119183 TTTGCTAGGCATTAGAAAAACCATCAATGATCCCAGCCAAACAACGCTTTCAGATAATTGTTCAGGGCATCAGGG---------------------AATACACAATCTAGTCTCAGGACATGGTAGATATCATAGAGCATTGTCGAATCTCACACTCAACAGCCCAAGTCACTTTCAAA-TAGTTTATTTT---CAAAAGAGGAATTATGATTCTGATCATTTAGTCAATTCACTA--------AAGT-GAAAAGCATGAAAAA-GGAATTAA
s panTro4.chr7             143154801 238 + 161824586 TTTGCTAGGCATTAGAAAAACCATCAATAATCCCAGCCAAACAACGCTTTCAGATAATTGTTCAGGGCATCAGGG---------------------AATACACAATCTAGTCTCAGGACATGGTAGATATCATAGAGCATTGTCGAATCTCACACTCAACAGCCCAAGTCACTTTCAAA-TAGTTTATTTT---CAAAAGAGGAATTATGATTCTGATCATTTAGTCAATTCACTA--------AAGT-GAAAAGCATGAAAAA-GGAATTAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138975995 238 + 157549271 TTTGCTAGGCATTAGAAAAATCATCAATAATCCCAGCCAAACAACGCTTTAAGATAACTGTTCAGGGCATCAGAG---------------------AATATACAATCTAGTCTCAGGACATGGTAGATATCATAGAGCATTGTCGAATCTCACACCCAACAGCCCAAGTCACTTTCAAA-TAGTTTATTTT---CAAAAGAGGAATCATGATTCTGATCATTTAGTCAATTCACTA--------AAGT-GAAAAGCATGAAAAA-GGGATTAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096681 238 + 110113093 TTTGCTAGGCATTAGAAAAACCGTCAATAATCTCAGCCAAACAATGCTTTCAGATAATTGTTCAGGGCATCAGGG---------------------AATATACAATCTAGTCTCAGGATATGGTAGATATCATAGAGCATTGTCGAATCTCACACTCAACAGCCCAAGGCACTTTCAAA-TAGTTTATTTT---CAAAAGAGGAATGATGATTCTGATCATCTAGTCAATTCACTA--------AAGT-GAAAAGCATGAAAAA-GGAATTAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180991401 235 + 198365852 TTTGCTAGGCATTAGAAAAACCATCAATAATCCCAGTCAAACAACACTTTCAGATAATTGTTCAGGGCATCAGGG---------------------AATATACAATCTAGTCTCAGGACATGGTAGTTATCATACAGCACTGCCGAATCCCACACTCAGCAGCCCAAGGCACGTTCAAA-TAGTTTATTTT---CAAAAGAGGA---ATGATTCCGATCATTTAGTCAATTCACTA--------AAGT-GAAAAGCATGAAAAA-GGAATTAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174737173 235 + 192294377 TTTGCTAGGCATTAGAAAAACCATCAATAATCCCAGTCAAACAACACTTTCAGATAATTGTTCAGGGCATCAGGG---------------------AATATACAATCTAGTCTCAGGACATGGTAGTTATCATACAGCACTGCCGAATCCCACGCTCAGCAGCCCAAGGCACGCTCAAA-TAGTTTATTTT---CAAAAGAGGA---ATGATTCCGATCATTTAGTCAATTCACTA--------AAGT-GAAAAGCATGAAAAA-GGAATTAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163408348 236 + 180432695 TTTGCTAGGCATTAGAAAAACCATCAATAATCCCAGTCAAACAACACTTTCAGATAATTGTTCAGGGCATCAGGG---------------------AATATACAATCTAGTCTCAGGACATGGTAGTTATCATACAGCACTGCCGAATCCCACACTCAGCAGCCCAAGGCACGTTCAAAgtagtttatttt---caaaagagga---aTGATTCCGATCATTTAGTCAATTCACTA--------AAGT-GAAAAGCATGAAAAA-GGAATTAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110437116 235 + 127223203 TTTGCTAGGCATTAGAAAAACCATCAATAATCCCAGTCAAACAACGCTTTCAGATAATTGTTCAGGGCATCAGGG---------------------AATATACAATCTAGTCTCAGGACATGGTAGTTATCATAGAGCATTGTCGAATCCCACACTCAGCAGCCCAAGGCATGTTCAAA-TAGTTTATTTG---CAAAAGAGGA---ATGATTCCGATCATTGAGTCAATTCACTA--------AAGT-GAAAAGCATGAAAAA-GGAATTAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23783394 229 - 128169293 TTTGCTAGGCACTAGGAAAACCATCAATAATCCCAGCC-AACAGTGCTTTCAGATGATTGTTCAGAGCTTCAGGG---------------------AATATACAATCTAGTCTCAGGACACAGTACTGAG--------ACTGGCCAATCCCACATTCGATAGCCCAAGACACTTTCAAA-TAGTTTATTTG---CAAAAGAAGAATCATGATTCCGATCATTTAGCCAATTCACTG--------AAGT-GAAAAGCATGAAAAA-GGAATTAA
i calJac3.chr8             C 0 I 2310
s mm10.chr6                 40424879 247 + 149736546 TTTTCTAGGCATTAAAACCATCAACAACTATCTTAGCC-ACCACCACTTTCAGATCATTGTATGGGACATCAGAG---------------------AAAACATGGTCCTGTCTTATGTCACTGCAGACAGCGAAGAGGATCACCCGGTCCCACACTCAACAACCTAAAGCACTTTCAAG-TATTCTATTTTGGAGAAAAAAAGAATCACAAATCTAACTAACTAATGAATTCACTGAAACAAACAAAC-AAAAAACATGAAAAA--AAATTAA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52104165 251 -  59632846 TTTCCTAGGCCTGAGAAATGCCATCAGTAATC-CAGCC-AGCAGCGCTTGCGGATCATTGCTCGGGGCGTCAGAGAGGTTGCGTATCCAGTCTCCCAATACACGATCCAGTCTCCAAACACAGAACCCATCCCAGAGGGTCACCCAGTCCCGTGTTCA-CAGCCTGAGA-GCTTTCAAA-TAGTTTGCTTT---CAAGAGAGGAATCATGAATCTGACTAA-----CAATGAACTA--------AAACAAAAAAGCATGGGAAGGGGAATTA-
i canFam3.chr16            I 987 C 0

a score=21265.000000
s hg38.chr7_GL383534v2_alt     55119 5 +    119183 GAGTT
s panTro4.chr7             143155039 5 + 161824586 GAGTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138976233 5 + 157549271 GAGTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096919 5 + 110113093 GAGTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180991636 5 + 198365852 GAGTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174737408 5 + 192294377 GAGTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163408584 5 + 180432695 GAGTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110437351 5 + 127223203 GAGTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23785933 5 - 128169293 GAGTT
i calJac3.chr8             I 2310 C 0
s mm10.chr6                 40425126 4 + 149736546 -AGTT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52104416 5 -  59632846 GTATT
i canFam3.chr16            C 0 I 385

a score=134053.000000
s hg38.chr7_GL383534v2_alt     55124 43 +    119183 -CATAAAGCAGAAAGCCTCGAACAATGTTATGTTTGTCAGGGTC
s panTro4.chr7             143155044 43 + 161824586 -CATAAAGCAGAAAGCCTCGAACAATGTTATGTTTGTCAGGGTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138976238 43 + 157549271 -CATAAAACAGAAAGCCTCGAACTATGTTATGTTTGTCAGGGTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096924 43 + 110113093 -CATAAAACAGAAAGCCTTGAACAATGTCATGTTTGTCAGGGTC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180991641 43 + 198365852 -CATAAAACACAAAGCTTTGAACAATGTTATGTTTGTCAGGGTC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174737413 43 + 192294377 -CATAAAACACAAAGCTTTGAACAATGTTATGTTTGTCAGGGTC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163408589 43 + 180432695 -CATAAAACACAAAGCTTTGAACAATGTTATGTTTGTCAGGGTC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110437356 43 + 127223203 -CATAAAACAGAAAGCTTTGAACAATGTTATGTTTGTCAGGGTC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23785938 43 - 128169293 -CATAAAACAGAAAGGGTAGAATGATGTTACGTTTGTCAGGGTC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40425130 43 + 149736546 CCATAAAATAAAAAGGCTAAAATGACATTTTGTTACTT-TGGTT
i mm10.chr6                C 0 C 0
e canFam3.chr16             52104421 385 -  59632846 I

a score=374533.000000
s hg38.chr7_GL383534v2_alt     55167 116 +    119183 AAAGATAAGAAAAAGCACTCAGAAA---GAAAGAGGGGTGACCTTGGGGATAAGACGAGTTTTTTAAGCACCAAGTTCCCCCACGCTTTCCTATATTTTCC-CCTACCATCCATGTCTAT
s panTro4.chr7             143155087 116 + 161824586 AAAGATAAGAAAAAGCACTCAGAAA---GAAAGAGGGGTGACCTTGGGGATAAGACGAGTTTTTTAAGCACCAAGTTCCCCCATGCTTTCCTATATTTTCC-CCTACCATCCATGTCTAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138976281 116 + 157549271 AAAGATAAGAAAAAGCACTCAGAAA---GAAAGAGGGCTGACCTTGGGGATAAGATGAGCTTTTTAAGCACCAAGTTCCCCCACGCTTTCCTATATTTTCC-CCTACCATCCATGTTTAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93096967 116 + 110113093 AAAGATAAGAAAAAGCACTCAGAAA---GAAAGAGGGGTAACCTTGGGGATAAGATGAGTCTTTTAAGCACCAAGTTCCCCCACGCTTTCCTATATTCTCC-CCTACCATCCATGTCTAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180991684 115 + 198365852 AAAGATAAGAAAAAGTACTCAGAAA---GAAAGAGGGGTGACCTTGGGCATAAGATGAGCTTTTTAAGCACCAAGTTCCCCCACGCTTTCTTATATTTTCC-CCTACCGTCCAT-TCTAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174737456 115 + 192294377 AAAGATAAGAAAAAGTACTCAGAAA---GAAAGAGGGGTGACCTTGGGCATAAGATGAGCTTTTTAAGCACCAAGTTCCCCCACGCTTTCTTATATTTTCC-CCTACCATCCAT-TCTAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163408632 115 + 180432695 AAAGATAAGAAAAAGTACTCAGAAA---GAAAGAGGGGTGACCTTGGGCATAAGATGAGCTTTTTAAGCACCAAGTTCCCCCACGCTTTCTTATATTTTCC-CCTACCATCCAT-TCTAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110437399 115 + 127223203 AAAGATAAGAAAAAGCACTCAGAAA---GAAAGAGGGGTGACCTTGGGCATAAGATGAGCTTTTTAAGCACCAAGTTCCCCCACGCTTTCTTATATTTTCC-CCTACCATCCAT-TCTAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23785981 117 - 128169293 AAAGATAAGAAAAAGCAATCAGAAA---CTAAGAGAGGTGACCTTGGGGAAGAGATGAGCTTTTTAAGCACCAGGTTCCCCCACACTTTCCTATATTTCCCATCTGCCATCCATGTCTAT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40425173  98 + 149736546 AAAGATAAGAAAACATGTTCACAAA---GAATGTG----------------AAACTAAGTTTCCTATACATCAAGGCCCCCCGTTCCTGC--ATTTTCTCC-CTTGATATGCATGTACAT
i mm10.chr6                C 0 I 175
s canFam3.chr16             52104806  89 -  59632846 AAAGACAAGAGGGGGCACACTGTACTTTGAAATGGGGGTGAACTTGGGGATAAAGGGA-----------------------------TTCCCATCTTTCCC-CTTA-CATCCGGAGCTCC
i canFam3.chr16            I 385 C 0

a score=1468096.000000
s hg38.chr7_GL383534v2_alt     55283 467 +    119183 TACCTTCACAGTCCAGTCGTTTTTTT--CCTGTGGAATGCATCAGGACAGCTAGGGAGCTTTAAAAGGTGCCAGGGGCTACCCTAGGTCTATAGAATCACCATCTTCCCTGCCCTGCCACA-GGGTGATTCTGCTGATGCATGCCAGCAATAAGAGCCCCTG----CTTGGGCCTCTGTATACACGCTCCTAACGCTTAACAGTGGCAGTATATGGTCAGCAGAGGAAAGGGACTGTCTGGGACAGAGCTACAATGACCCTC-GATAGGCTCTGTCCTCCTCATACTCAACCAACCTGCTTCTTCTAATACTTACTGCCTTGTTTACCCACACGCCACACATTACGGGGTTCAGCTAGCTCAAATTTAGCTTCTTTCCTCCAACCCAGCCTGCCCATGACTACTC-AGTG------TCTTAAAACTTT-ATTTACCCaaatgttat-attgaagtatagcataagtatagaaaagtg--caaagat
s panTro4.chr7             143155203 467 + 161824586 TACCTTCACAGTCCAGTCGTTTTTTT--CCTGTGGAATGCATCAGGACAGCTAGGGAGATTTAAAAGGTGCCAGGGGCTACCCTAGGTCTATAGAATCACCATCTTCCCTGCCCTGCCACA-GGGTGATTCTGCCGATGCATGCCAGCGATAAGAGCCCCTG----CTTGGGCCTCTGTATACACGCTCCTAACGCTTAACAGTGGCAGTATATGGTCAGCAGAGGAAAGGGACAGTCTGGGACAGAGCTACAATGACCCTC-GATAGGCTCTGTCCTCCTCATACTCAACCAACCTGCTTCTTCTAATACTTACTGCCTTGTTTACCCACACGCCACACATTACGGGGTTCAGCTAGCTCAAATTTAGCTTCTTTCCTCCAACCCAGCCTGCCCATGACTACTC-AGTG------TCTTAAAACTTT-ATTTACCCaaatgttat-attgaagtatagcataagtatagaaaagtg--caaagat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138976397 467 + 157549271 TACCTCCACAGTCCAGTGGTTTTTTTTCCCTATGGAATGCATCAGGACAGCTAGGGAGCTTTAAAAGGTGCCA-GGGCTACCCTAGGTCTACAGAATCACCATCTTCCCTGCCCTG-CAGA-GGGCGATTCTGCTGATGCATGCCAGCGATAAGAGCCCCTG----CTTGGGCCTCTGTGTACACACTCCTAACCCTTCACAGCGGCAGTACATGGTCAGCAGAGGAAAGGGACAGTCTGGGACAGAGCTACAATGACCCTC-GATAGGCTCTGTCCTCCTCATGCTCAACCAACCTGCTTCTTCTAATACTTACTGCCTTGTTTACCCACATGCCACACATTACAGGGTTCAGCTAGCTCAAACTTAGCTTCTTTCCTGCAACCCAGCCTGCCCACGACTACTC-AGTG------TCTTAAAACTTT-ATTTACCCaaatgttat-attgaagtatagcataagtatagaaaagtg--caaagat
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93097083 467 + 110113093 TACCTCCACAGGCCAGT-GTTTTTTT--CCTGTGGAATGCATCAGGACAGCTAGGGAGCTTTAAAAGGTGCCAGGGGCTACCCTAGGTCTACAGAATCACCATCTTCCCTGCCCTGCCACA-GGGTGATTCTGCTGCTGCATGCCAGCAATAAGAGCCCCTG----CTTGGGCCTCTGTATACACGCTCCTAACGCGTAACAGCGGCAGTATACGGTCAGCAGTGGCAGTACACAGTCTGGGACAGAGCTACAATGACCCTC-AATAGGCTCTGTCCTCCTCATACTCAACCAACCTGCTTCTTCTAATACTTACTGCCTTGTTTACCCACACGCCACACATTACGGGGTTCAGCTAGCTCAAACTTAGCTTCTTTCCTCCAACCCAGCCTGCCCATGACTACTCAAGTG------TCTTAAAACTTT-ATTTACCGaaatgttat-attgaagtatagcataagtatagaaaagtg--caaagat
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180991799 468 + 198365852 TACCTCCACAGTCCAGTGGATTTTTT-CCCTGTGGCATGTATCAGGACAGCTAGCGAGCTTTAAAAGGTGCCAGGGGCTACCCTAGGTCCACAGAATCACCATCTTCCCTGCCCTGCCACA-GGGTGATTCTGCTGATGCATGGCAGCGATAACAGCCCCTG----CTTGGGCCTCTGTGTACATGCTCCTCACCCTTCACAGTGGCAGTATATGCTCAGCAGACGAAAGGGACAGTCTGGGACAGAGCTACAATGAATCTT-GATAGGCTCTGTCCTCCTCATACTCAACCAACCTGCTTCTTCTAATACTCACTGCCTTGTTTACCCACACACCACAAATTACTGGGTTCAGCTAGCTCAAACTTAGCTTCTTTCCTCCAACCCAGCCCGCTCATGACTACTT-AGTG------TCTTAAAACTTt-atttacccaaatgttat-attgaagtatagcataagtatagaaaagtg--ccaagat
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174737571 466 + 192294377 TACCTCCACAGTCCAGTGGATTTTTT-CCCTGTGGCATGTATCAGGACAGCTAGCGAGCTTTAAAAGGTGCCAGGGGCTACCCTAGGTCCACAGAATCACCATCTTCCCTGCCCTGCCACA-GGGTGATTCTGCTGATGCATGGCA--GATAACAGCCCCTG----CTTGGGCCTCTGTGTCCATGCTCCTCACCCTGCACAGTGGCAGTATATGCTCAGCAGACGAAAGGGACAGTCTGGGACAGAGCGACAATGAATCTT-GATAGGCTCTGTCCTCCTCATACTCAACCAACCTGCTTCTTCTAACACTCACTGCCTTGTTTACCCACACGCCACAAATTACTGGGTTCAGCTAGCTCAAACTTAGCTTCTTTCCTCCAACCCAGCCCGCTCATGACTACTT-AGTG------TCTTAAAACTTt-atttacccaaatgttat-attgaagtatagcataagtatagaaaagtg--ccaagat
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163408747 468 + 180432695 TACCTCCACAGTCCAGTGGATTTTTT-CCCTGTGGCATGTATCAGGACAGCTAGCGAGCTTTAAAAGGTGCCAGGGGCTACCCTAGGTCCACAGAATCACCATCTTCCCTGCCCTGCCACA-GGGTGATTCTGCTGATGCATGGCAGCGATAACAGCCCCTG----CTTGGGCCTCTGTGTACATGCTCCTCACCCTTCACAGTGGCAGTATATGCTCAGCAGATAAAAGGGACAGTCTGGGACAGAGCTACAATGAACCTT-GATAGGCTCTGTCCTCCTCATACTCAACCAACCTGCTTCTTCTAATACTCACTGCCTTGTTTACCCACACGCCACAAATTACTGGGTTCAGCTAGCTCAAACTTAGCTTCTTTCCTCCAACCCAGTCTGCTCATGACTACTT-AGTg------tcttaaaacttt-atttacccaAATGTTAT-ATTGAAGTATAGCATAAGTATAGAAAAGTG--CCAAGAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110437514 468 + 127223203 GACCTCTACAGTCCAGTGGATTTTTT-CCCTGTGGCATGCATCAGGACAGCCGGCGAGCTTTAAAAGGTGCCAGGGGCTACCCTAGGTCTACAGAATCACCATCTTCCCTGCCCTGCCACA-CGGTGATTCCGCTGATGCACAGCAGCGATGACAGCCCCTG----CTCGGGCCTCTGTGGACATGCTCCTCACCCTTCACAGTGGCAGTATATGCTCAGCAGAGGAAACGGACAGTCTGGGACAGAGCTACAATGAACCTC-GATAGGCTCTGTCCTCCTCATACTCAACCAACCTGCTTCTTCTAATACTCACTGCCTTGTTTACCCACACGCCACACATGACTGGGTTCAGCTAGCTCAAACTTAGCTTCTTTCCTCCAACCCAGCCTGCTCATGACTACTC-AGTG------TCTTAAAACTTt-atttacccaaatgttat-attgaagtatagcataagtatagaaaagtg--ccaagat
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23786098 468 - 128169293 TACCTCTACAGTCCAGTGGTTTTGTT-TCCTGTGAAATGCATCAGGACAACTAGGGAGCTTTAAAAGGTGCCAGGGGCTACCCTAAGTCTACACAAACACCATCTTCCCTGTCCTGCCACA-AGGTGATTATGCTGATGCATGACAGAGATAAGAGCCCCTG----CTTGGGCCTCTGTGTACAGGCTCCTAACCCTTTACAGTGGCAGTATATGGTAGGCAGAGGAAAGGGACAGTCTGGGACAGAGCTACAATAACCCTT-GATAGGCTCTGTCCTCCTCATACTCAACTAACCTGCTTCTTCTAATACTTACTGCCTTGCTTACCCACACGCCAC--GTTACTGGGTTCAGTTAGCTCAAACTTAGCTCCTTTCCTCCAGCCcagcctgcccatgactactc-agtg------tcttaaaacttt-atttacctaagtgttgt-actgaagtatagcacaagtacagaaaagtgcacaaagat
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52104895 432 -  59632846 TGTCTCCAGAGTTTAGGGCCCTTCTG--CCTGCGGAGCGCATCAGGACCTCCAGGGGACTGAAAAGGGTGCCAGGGCCCCCCCCAGACATGCAGGATCATGGTCCCCACC-TCGTGCCACATGGGTGAGTC-GCCGGTG---------------AGCTCCTGTGCCCTTGCGCCTCCGCATACGCAGCCCTAACCCCGCACCATGGCAGCAGGTGGCCGGCCTAGG---GGGGCACGAGGGGACGGAGCAGCGATGCCCCGCAGGTGGGCCCCGGCCTCC----GCTCACCGAAGCCGCCTCCTCT--------------------CCCCTCTGCCACTTCGCACCGGGTTCAAAGAGCTCGAACTTCACTTCTTCCCTCCAACCCGGCCGGTCCGGGACAGCTC-AGTAGTAACTCCTTAAAACTTTAATTTCCCTACACTTTGTCACTGAA----AGCG-AAGtacagaagagca--cacgaat
i canFam3.chr16            C 0 I 429
e mm10.chr6                 40425271 175 + 149736546 I

a score=156738.000000
s hg38.chr7_GL383534v2_alt     55750 54 +    119183 gtttattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcct
s panTro4.chr7             143155670 54 + 161824586 gtttattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcct
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138976864 54 + 157549271 gtttattgcagcactattcacaatagcaaagatatggaatcaacccaaatgcct
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93097550 54 + 110113093 gtttattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcct
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180992267 54 + 198365852 gtgcattgcagcactattcacaatagcaaaggcaagcaaccaacccaaatgccc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174738037 54 + 192294377 gtgcattgcagcactattcacaatagcaaaggcaagcaaccaacccaaatgccc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163409215 54 + 180432695 Gtgcattgcagcactattcacaatagcaaaggcaagcaaccaacccaaatgccc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110437982 54 + 127223203 gttcattgcagcactattcacaatagcaaaggcaagcaaccaacccaaatgccc
i chlSab2.chr21            C 0 I 334
s calJac3.chr8              23786566 54 - 128169293 gtttactgcagcactattcacaatagcaaagatacggaatcatcccaaatgcct
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40425271 175 + 149736546 I
e canFam3.chr16             52105327 429 -  59632846 I

a score=87297.000000
s hg38.chr7_GL383534v2_alt     55804 32 +    119183 atcaatggtagaccggataaagaaaatgcggt
s panTro4.chr7             143155724 32 + 161824586 atcaatggtagaccggataaagaaaatgcggt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138976918 31 + 157549271 atcaatggtagactag-taaagaaaatgtggt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93097604 32 + 110113093 atcaatggtagactggatgaagaaaacatggt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180992321 32 + 198365852 accgatggtagactggatgaagaaaacgtggt
i rheMac3.chr3             C 0 I 127
s macFas5.chr3             174738091 32 + 192294377 accgatggtagactggatgaagaaaatgtggt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163409269 32 + 180432695 accgatggtagactggatgaagaaaacgCGGT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110438370 32 + 127223203 atcgatggtagactggataaagaaaacgtggt
i chlSab2.chr21            I 334 C 0
s calJac3.chr8              23786620 32 - 128169293 atcaatggtagactggataaagcaaatgtggt
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40425271 175 + 149736546 I
e canFam3.chr16             52105327 429 -  59632846 I

a score=2583.000000
s hg38.chr7_GL383534v2_alt     55836 2 +    119183 ac
s panTro4.chr7             143155756 2 + 161824586 ac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138976949 2 + 157549271 aa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93097636 2 + 110113093 ac
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174738123 2 + 192294377 ac
i macFas5.chr3             C 0 I 230
s papAnu2.chr3             163409301 2 + 180432695 AC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110438402 2 + 127223203 ag
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23786652 2 - 128169293 ac
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40425271 175 + 149736546 I
e canFam3.chr16             52105327 429 -  59632846 I
e rheMac3.chr3             180992353 127 + 198365852 I

a score=755.000000
s hg38.chr7_GL383534v2_alt     55838 1 +    119183 a
s panTro4.chr7             143155758 1 + 161824586 a
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138976951 1 + 157549271 a
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93097638 1 + 110113093 a
i nomLeu3.chr13            C 0 C 0
s chlSab2.chr21            110438404 1 + 127223203 g
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23786654 1 - 128169293 a
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40425271 175 + 149736546 I
e canFam3.chr16             52105327 429 -  59632846 I
e papAnu2.chr3             163409303 0 + 180432695 C
e macFas5.chr3             174738125 230 + 192294377 I
e rheMac3.chr3             180992353 127 + 198365852 I

a score=15527.000000
s hg38.chr7_GL383534v2_alt     55839 10 +    119183 tatacaccgt
s panTro4.chr7             143155759 10 + 161824586 tatacaccgt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138976952 10 + 157549271 tatacaccat
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93097639 10 + 110113093 tatacaccgt
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174738355 10 + 192294377 tacacgccac
i macFas5.chr3             I 230 C 0
s papAnu2.chr3             163409303  7 + 180432695 ---ACACCAc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110438405  8 + 127223203 --cacaccac
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23786655 10 - 128169293 catacaccgt
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40425271 175 + 149736546 I
e canFam3.chr16             52105327 429 -  59632846 I
e rheMac3.chr3             180992353 127 + 198365852 I

a score=49393.000000
s hg38.chr7_GL383534v2_alt     55849 16 +    119183 agaatactatgcagcc
s panTro4.chr7             143155769 16 + 161824586 agaatactatgcagcc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138976962 16 + 157549271 agactactacgcagcc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93097649 16 + 110113093 agaatactatgcagcc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180992480 16 + 198365852 agaatactatgcagcc
i rheMac3.chr3             I 127 C 0
s macFas5.chr3             174738365 16 + 192294377 agaatactatgcagcc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163409310 16 + 180432695 agaataccatgcagcc
i papAnu2.chr3             C 0 I 230
s chlSab2.chr21            110438413 16 + 127223203 agaataccatgcagcc
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23786665 16 - 128169293 ggaatactatgcagcc
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40425271 175 + 149736546 I
e canFam3.chr16             52105327 429 -  59632846 I

a score=1021912.000000
s hg38.chr7_GL383534v2_alt     55865 345 +    119183 ataaaaaggaatgagatcatgtcctttgcagggacatggatggagctggaagccattatcctcagcaaactaacatgggaacagaaacccaaacacagcatgttctcactcataagtgggagctgaacaatgagaacacatggacacagggaagggaacaacacacaccaggtcctgtcagcagggaaggggaagaaaaagcatcagaataaatagctaacacatgcagggcttaatacctaggtgatgggttgagaggtgcagcaaaccaccatggcacatgtttacctatgtaacaaacctgcacatcctgcacatgtatcctggaacttaaacttttaaaaa
s panTro4.chr7             143155785 344 + 161824586 ataaaaaggaatgagatcatgtcctttgcagggacatggatggagctggaagccattatcctcagcaaactaacatgggaacagaaacccaaacatagcatgttctcactcataagtgggagctgaacaatgagaacacatggacacaaggaagggaacaacacacaccaggtcctgtcagcagggaaggggaagaaaaagcatcagaataaatagctaacacatgcagggcttaatacctaggtgatgggttgagaggtgcagcaa-ccaccatggcacatgtttacctgtgtaacaaacctgcacatcctgcacacgtatcctggaacttaaactttaaaaaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138976978 345 + 157549271 ataaaaaggagcgagatcatgtcctttgcagggacatggatggagctggaagccattatcctcagcaaactaacatgggaacagaaacccaaacactgcatgttctcactcataagcaggagctgaacaatgagaacacatggacactgggaagggaacaacacacaccagggcctgtcggcggggaaggggaagaaaaagcattagaataaatagctaatgcatgcaaggcttcatacctaggtgataggttgagaggtgcagcaaactaccacagcacacatttacctatgtaacaaacctgcacatcctgcacatgtatcctggaacttaaaattttaaaaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93097665 345 + 110113093 ataaaaaggaacgagatcatgtcctttgcagggacatggatggagctggaagccattatcctcagcaaactaacatgggaacagaaacccaaacactgcatgttctcactcataagtgggagctgaacaatgagaacacatggacacagggaagggaacaacacacaccagagcctgtcggtggggaaggggaagaaaaagcatcagaataaatagctaacgcatgcagggcttcatacctaggtgacaggttgagaggtgcagcaaaccaccattgcacacgtttacctatgtaacaaatgtgcacatcctgcacatgtatcctggaacttaaaattttaaaaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180992496 344 + 198365852 ataaaacggaacgagatcacgtcctttgcagggacatggatggagctggaagccattatcctcagcaaactaacatgggaacagaaacccaaacgctccatgttctcactcataagtgggagctgaacagtgagaacacatggacacagggaggggaacaacacataccagggcctgtcggtggggaaggggaagaaaaagcatcagaataaatagctaacgcatgaagggcttaatacctaggtgatgggttgagaggtggagcaaaccaccatggcacacgtttacctatgtaacaaacctgcacat-ctgcacatttatccgggaacttaaaattttaaaaa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174738381 344 + 192294377 ataaaacggaacgagatcacgtcctttgcagggacatggatggagctggaagccattatcctcagcaaactaacatgggaacagaaacccaaacactccatgttctcactcataagtgggagctgaacagtgagaacacatggacacagggaggggaacaacacataccagggcctgtcggtggggaaggggaagaaaaagcatcagaataaatagctaacgcatgaagggcttaatacctaggtgatgggttgagaggtggagcaaaccaccatggcacacgtttacctatgtaacaaacctgcacat-ctgcacatttatccgggaacttaaaattttaaaaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163409556 342 + 180432695 ataaaacagaacgagatcacgtcctttgcagggacatggatggagctggaagccattatcctcagcaaactaacatgggaacagaaacccaaacactccatgttctcactcataagtgggagctgaacagtgagaacacatggacacagggaggggaacaacacataccagggcctgtcggtggggaaggggaagaaaaagcaTCAGAATAAATAGCTAACGCATgaagggcttaatacctaggtgatgggttgagaggtggagcaaaccaccatggcacacgtttacctatgtaacaaacctgcacat-ctgcaCATTTATCCgggaacttaaaattttaaa--
i papAnu2.chr3             I 230 C 0
s chlSab2.chr21            110438429 344 + 127223203 ataaaacggaacaagatcatgtcctttgcagggacatggatggagctggaagccattatcctcagcaaactaacatgggaacagaaacccaaacactgcatgttctcactcataagtgggagctgaacagtgagaacacgtggacacagggaggggaacaccacataccagggcctgtcggtggagaaggggaagaaaaagcatcagaataaatagctaacgcatgaagggcttaatacctaggtgatgggttgagaggtgcagcaaaccaccatggcacacgtttacctatgtaacaaacctgcacat-ctgcacatttatcctggaacttaaaattttaaaaa
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23786681 341 - 128169293 attaaaaggaacaagatcatgtcctttgcagggacacggatgaagctggaagccattatcctcagtaaactaacatgggaacagaaaatcaaatactgcatgttctcactcataagtgggagccaaacaatgaggacacatggacacagggcagggaaaaacacacactagggccttttgagagatagcggggagggagagcatcagaataaatagctaaagcatgcagggcttcatacctaggtgatgggttcacaggtgcagcagaccaccatagtgcatgtttacctatgtaacaaacctgcacatcctgcacatgtatcctggaacttaaaatt----aaa
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40425271 175 + 149736546 I
e canFam3.chr16             52105327 429 -  59632846 I

a score=649953.000000
s hg38.chr7_GL383534v2_alt     56210 209 +    119183 aag-----tgcacaaagtacaactcaatggattttcccaaagtaaacatatttgtg-taagtagcacc--cagatcaagaagctgaaagaacattatttgtacaacagaaacctccctcatagcagctccaagtcattaaccctct--------------ctcat---------------gaattagcttagcctcttctgagtttctacaaaatgtaattatagtttgc----ttttatgtctttta-tg
s panTro4.chr7             143156129 218 + 161824586 aagaaaagtgcacaaagtacaactcaatggattttcccaaagtaaacatatttgtg-taagtagcacc--cagatcaagaagctgaaagaacattatttgtacatcagaaacctccctcatagcagctccaagtcattaaccctct--------------ctcat---------------gaattagcttagcctcttctgagtttctacaaaatgtaattatagtttgcattcttttatgtctttta-tg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138977323 218 + 157549271 aagaaaagtgcacaaagtacaactcaatggattttcccaaagtaaacatacttgtgttaagtaacacc--cagatcaagaagctgaaagaacattatttgtacatcagaaacctctgtcatagagcctccaagtcattaaccctct--------------ctcat---------------gaattagcttagcctcttctgagtttccac-aaatgtaattatagtttgtattcttttatgtctttta-cg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93098010 217 + 110113093 aagaaaagtgcacaaagtacaactcaatggattttcccaaagtaaacatatttgtg-taagtaacacc--cagatcaagaagctgaaagaatattatttgtacatcagaaacctccgtcatagagcctccaaatcattaaccctct--------------ctcat---------------gaattagcttagcctcttctgagtttccac-aaatgtaattatagtttgtattcttttatgtctttta-tg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180992840 217 + 198365852 aagaaaagtgcacaaagtacaactcaatggattttcccgaagtaaacatatttgtg-taagtagcacc--cagattaagaagctgaaagaacattatttgtacatcagaaccctccctcatagagcctccaagtcattaaccctct--------------ctcaT---------------GAATTAGCTTAGCCTCTTCTGAGTTTCTAC-AAATGTAATTATAGTTTATATTCTTttatgtctttta-tg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174738725 217 + 192294377 aagaaaagtgcacaaagtacaactcaatggattttcccgaagtaaacatatttgtg-taagtagcacc--cagattaagaagctgaaagaacattatttgtacatcagaaccctccctcatagagcctccaagtcattaaccctct--------------ctcat---------------gaattagcttagcctcttctgagtttctac-aaatgtaattatagtttatattcttttatgtctttta-tg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163409898 214 + 180432695 ---aaaagtgcaCAAAGTACAACTCAATGGATTTTCCCGAAGTAAACATATTTGTG-TAAGTAGCACC--CAGATTAAGAAGCTGAAAGAACATGATTTGTACATCAGAACCCTCCCTCATAGAGCCTCCAAGTCATTAACCCTCT--------------CTCAT---------------GAATTAGCTTAGCCTCTTCTGAGTTTCTAC-AAATGTAATTatagtttatattcttttatgtctttta-tg
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110438773 217 + 127223203 aagaaaagtgcacaaagtacaactcaatggattttcccaaagtaaacatatttgtg-tgagtagcacc--cagatcaagaagctgaaagaacattatttgtacatcagaaccctccctcataaagcctccaagtcattaaccctct--------------ctcat---------------gaattagcttagcctcttctgagtttctgc-aaatgtaattatagtttatattcttttatgtctttta-tg
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23787022 232 - 128169293 aaaaaaaatgcacaaagtataactcaatgaattttcccaaagtcaacacatttgta-taaccagcacc--cagatcaagaagctggaagaacattatttgtacatcagaaacatccctcatagtgcctccaagtcattaaccctgt--------------ctcatgacttctgaaaccacgaattagcttagcctcttctgagtttctac-aaatgtaattagagcttgtattatcttatgtctttta-tg
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40425446 209 + 149736546 -----AAGTATAAATTATACAACACACCCAGTTTTCCCAGAG--AGCATTCCTGTA-TAGGAAGCAACGGAAGGTCAAGAGGCAGACATAA---GACACACACATAAGAGAACCTCCTGAGAGA----CCAATAAACTCAGCCTCTGATGAGTAATCGTGGTCCT---------------GAAGAAGTTTGGTCT-TTTTGACATTTTAT-AAAAGCAAGGATG----------TCTTCTGCTTATTATTA
i mm10.chr6                I 175 C 0
e canFam3.chr16             52105327 429 -  59632846 I

a score=1067183.000000
s hg38.chr7_GL383534v2_alt     56419 317 +    119183 tcatccatgctgatatgtgtagcaacagtttgttcatctattacttctatcatatgcatgtagcagtttacctgct---taactggtgatgcacatttaggttacttccaatttgaagttacagcaacgggcactgctgtaaacaatcctgtatttgccatctgctgaaatagcgtaaagtggcattgtaatgcattgacctggttgggctgaactatccttctcagaa-ttcccttctttgtatgtttccagctgagat-------ttggaagtgaatcagtagccacgttatgtttgcatctgtaag-------------------------------------------gtcagtgcagaaggt--------------------------------------ccac
s panTro4.chr7             143156347 317 + 161824586 tcatccatgctgatgtgtgtagcaacagtttgttcatctattacttctatcatatgcatgtagcagtttacctgct---taactggtgatgcacatttaggttacttccaatttgaagttacagcaacgggcactgctgtaaacaatcctgtatttgctatctgctgaaatagcgtaaagtggcattgtaatgcattgacctggttgggctgaactatccttctcagaa-ttcccttctttgtatgtttccagctgagat-------ttggaagtgaatcagtagccacgttatatttgcatgtgtaag-------------------------------------------gtcagtgcagaaggt--------------------------------------ccac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138977541 320 + 157549271 tcatccatgctgatgtgtgtagcaatagtttgttcatctattacttctattatatgcatgcagcagtttacctgcttaataactggtgatgcacatttaggttacttccaatttgaagttacagcaacgggcactgctgtaaacaatcctgtatttgtcatctgctgaaatagcataaagtggcattgtaatgtattgacctggttgggctgaactatccttctcagaa-ttcccttctttgtatgtttccagctgagat-------ttggaagtgaatcagtagccatgttacgtttgcatctgtaag-------------------------------------------gtcagtgcagaaggt--------------------------------------ccac
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93098227 317 + 110113093 tcatgcatgctgatgtgtgtagcaatagttcgttcatctattacttctatcatatgcatgtagcagtttacctgct---taactggtgatgcacacttaggttacttccaatctgaagttacagcaacgggcactgctgtaaacaatcctgtatttgccatctgctgaaatagtgtaaagtggcattgtaatgcattgacctcgttgggctgaactatccttctcggaa-ttcccttctttgtatgtttccagctgagat-------ttggaagtgaatcagtagccatgttatgtttgcatctgtaag-------------------------------------------gtcagtgcagaaggt--------------------------------------ctac
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180993057 318 + 198365852 tcatccatgctgatgtgtgtagcaatagtttgttcatttagtacttctatcatatgcatgtagcagtttacctgct---taacTGGTGATGTGCATTCAGGTTACTTCCAATGTGAAGTTACAGCAACGGGCACTGCTGTAAACAATCCTGTATTTGCCATCTGCTGTAATAGTGTAAAgtggcattgtaatgcattggcctggttaggctgaactatcctcctcagaatttcccttctttgcatgcttccagctgagat-------ttggaagtgaatcaatagccacgttatgtttgcatctgtaag-------------------------------------------gtcggtgcagaaggt--------------------------------------ccac
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174738942 318 + 192294377 tcatccatgctgatgtgtgtagcaatagtttgttcatttagtacttctatcatatgcatgtagcagtttacctgct---taactggtgatgtgcattcaggttacttccaatgtgaagttacagcaacgggcactgctgtaaacaatcctgtatttgccatctgCTATAATAGTGTAAAgtggcattgtaatgcattggcctggttaggctgaactatcctcctcagaatttcccttctttgcatgcttccagctgagat-------ttggaagtgaatcaatagccacgttatgtttgcatctgtaag-------------------------------------------gtcggtgcagaaggt--------------------------------------ccac
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163410112 318 + 180432695 tCATCCATGCTGACGTGTGTAGCAATAGTGTGTTCATTTAGTGCTTCTATCATATGCATGTAGCAGTTTACCTGCT---TAACTGGTGATGTACATTCAGGTTACTTCCAATGTGAAGTTACAGCAATGGGCACTGCTGTAAACAATCCTGTATTTGCCATCTGCTGTAATAGTGTAAAGTGGCATTGTAATGCATTGGCCTAGTTAGGCTGAACTATCCTCCTCAGAATTTCCCTTCTTTGCATGCTTCCAGCTGAGAT-------TTGGAAGTGAATCAATAGCCAGGTTATGTTTGCATCTGTAAG-------------------------------------------GTCGGTGCAGAAGGT--------------------------------------CCAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110438990 318 + 127223203 tcatccatgctgatgtgtgtagcaacagtttgttcatttagtacttctatcatatgcatgtagcagtttacctgct---taactagtgatgcacattcgggttacttccaatgtgaagttacagcaacgggcactgctgtaaacaatcctgtatttgccatctgctgaaATAGCTTAAAgtggcattgtaatgcattgacctggttaggctgaactatcctcctcagaatttcccttctttgtatgcttccagctgagat-------ttggaagtgaatcaatagccacgttatgtttgcgtctgtaag-------------------------------------------gtcggtgcagaaggt--------------------------------------ccac
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23787254 302 - 128169293 tcatccatgctactgtgtgtagcaatagcttgttcatctattactt-tatcatatGCATGTAGCAGTTTACCTGCT---TA------GTCGTACATTTAAGTTACTTACAATTTGAAGTTATAGCAACTAGCACTGCTGTAAACAATCCTATATTTGCCATCTGCTGAAATAGCATACAgtggctttgtaacgcactgacctgggcgggctgaactatcctcctcagaa-ttcccttccttgtatgtttccagctgagat-------ttagaagtgaatcagcagccatgttatgtttgcatctg---------------------------------------------------gtgcagaagtt--------------------------------------ccac
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40425655 297 + 149736546 TCACCTACAATGCT---------AATGATGGGTCCGTGTGTCACTTCTATCATTTAGATGTAGCACGATGTCTACT---TCGCTACTGGTGCCCATTTAGGTCAGTGCTCACTAAAAGCTATGGCAACTAGCATTGCGGTAAGCAATTTGTTATCTGTTATCTG--GTAAGTGCCTGGGCTGAGTTTTGATGGCCCTTCcctgagtaggctgaactgcactgctcagaa-ttcccttccatgcatggttccaattgaaag-------ctgaaagtg--------gctatgaagggataacatctggaag-------------------------------------------gttggtgttggagca--------------------------------------cca-
i mm10.chr6                C 0 C 0
s canFam3.chr16             52105756 398 -  59632846 tcattcatgttgacacacagaacaatagtctgtccctgtactacttccatcctgtgcatgtaacacagcagctgtt---gaactgatgatgcacatttagcttatttccaatttgaagctattgccactagaccagctggaaaaatccctacacctgtcatctggtggacaCGtgt--ggtggctccgtaatgcttgaaccaggctgggccgaactccggtgctcagaa-ctcccttcctcttatg-----aggtgagatggggaacgtgggagggaagccgcaggtaccctgcattcccatcagaaggctggtacgggggcacctggtggctcagtggttgagcatctgacttcagttcaggggatgattttggggtcctgggatcgaatcccacatcaggctcccac
i canFam3.chr16            I 429 I 107

a score=655503.000000
s hg38.chr7_GL383534v2_alt     56736 186 +    119183 tgcatagctgcttctctgcaggcttactagagtggtg----aggggcagcagccagccctgatgatgctgcagccaccatccct-tgat--cttccttcagtttctctgactcctaagccaggtgtatgtttagttccataataaagggcatcggcttctcct-tag--gacacccacatcaccaaagctggatac
s panTro4.chr7             143156664 186 + 161824586 tgcatagctgcttctctgcaggcttactacagtggtg----aggggcagcagccagccctgatgatgctgcagccaccatccct-tgat--cttccttcagtttctctgactcctaagccaggtgtatgtttagttccataataaagggcatcggtttctcct-tag--gacacccacatcaccaaagctggatac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138977861 186 + 157549271 tgcatagttgcttctctgcaggctcactacagtgttg----aggggcagcagccagccctgatgatgctgcagccaccatccct-cgat--cttccttcagtttctctgactcctaagccaggcgtatgtttagttccataataaagggcatcagcttctcct-tag--gaaacccacatcaccaaagctggatac
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93098544 186 + 110113093 tgcatagttacttctctgcaggcttactacagtggtg----aggggcagcagccagccctgatgatgctgcagccaccatccct-tgat--cttccttcagtttctctgactcctaagccaggtatgtgtttagttccataataaagggcatcagcttctctt-tag--gacacccacatcaccaaagctggatac
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180993375 188 + 198365852 tgcatagctgcttctctgcaggcttaccacagtggtg----aggggcagcagccagccctgaagatgctgcagccaccatccct-tgat--cttccttcagcttctccgactcctaagccaggtgtgtgtttagttccataataaagggcaacagcttctcct-taggagacacccacatcaccaaagctggatac
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174739260 188 + 192294377 tgcatagctgcttctctgcaggcttaccacagtggtg----aggggcagcagccagccctgacgatgctgcagccaccatccct-tgat--cttccttcagcttctccgactcctaagccaggtgtgtgtttagttccataataaagggcaacagcttctcct-taggagacacccacatcaccaaagctggatac
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163410430 188 + 180432695 TGCATAGCTGCTTCTCTGCAGGCTTACCACAGTGgtg----aggggcagcagccagcccTGATGATGCTGCAGCCACCATCCCT-TGAT--CTTCCTTCAGCTTCTCCGACTCCTAAGCCAGGTGTGTGTTTAGTTCCATAATAAAGGGCAACAGCTTCTCCT-TAGGAGACACCCACATCACCAAAGCTGGATAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110439308 188 + 127223203 tgcgtagctgcttctctgcaggcttaccacagtggtg----aggggcagcagccagccctgacgatgctgcagccaccatccct-tcat--cttccttcagcttctccgactcctaagccaggtgtgtgtttagttccataataaagggcatcagcttctcct-taggagacacccacatcaccaaagctggatac
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23787556 177 - 128169293 tgcatagttgcttctctgcaagcttaccacagtggtg----aggggcagcagccagtcctggtgacgctggagccaccatccct-tgat--c---------cttttctgactcctaagccaggtgtgtgtttagttccataatcaagggcctcagcttctttt-tag--gacacccacatactcaaagctggagac
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40425952 169 + 149736546 ggcactgttgct-------atcctcaccttctgggat----gagaacagcagcccagcctttcatcacagtgacagaaactcta-agacaattgccttgagtt--------tcctaagttaggtgttttctc--ttccata---aagaacatcaacttctcttatag--gacacccacaccactaacactggagac
i mm10.chr6                C 0 I 194
s canFam3.chr16             52106261 183 -  59632846 tgcatcgttgctcatctgcaggccacctcgatcgggggccaggtggtggcagccaggcctgtgaatgctggacccagtctccctgggat--cctctttcagcttctcagactcctaagccaggtgtgtgtttagttccataacaaagggcatcggcttc--at-cag--gacacccgcatcattaaagtc------
i canFam3.chr16            I 107 C 0

a score=204849.000000
s hg38.chr7_GL383534v2_alt     56922 67 +    119183 agtaacagcctgatcc---gcgttcccacctatcttcatgagtttcagc-ttcttactcttccttttcctc
s panTro4.chr7             143156850 67 + 161824586 agtaacagcctgatcc---acgttcccacctatcttcatgagtttcagc-ttcttactcttctttttcctc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138978047 68 + 157549271 agtaacagcctgatcc---acgttcccatctatcttcatgagtttcagctttcttattcttccttttcctc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93098730 67 + 110113093 agtaacagcctgatcc---acgttcccatctatcctcatgagtttcagc-ttcttattcttccttttcctc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180993563 67 + 198365852 agtaacagcctgatcc---aagttcccatctatcttcatgagtttcagc-ttcttattcttcctcttcctc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174739448 67 + 192294377 agtaacagcctgatcc---aagttcccatctatcttcatgagtttcagc-ttcttattcttcctcttcctc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163410618 67 + 180432695 AGTAACAGCCTGATCC---AAGTTCCCATCTATCTTCATGAGTTTCAGc-ttcttattcttcctcttcctc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110439496 67 + 127223203 agtaacagcctgatcc---aagttcccatctatcttcatgagtttcagc-ttcttattcttcctcttcctc
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23787733 67 - 128169293 agtaactgcctgagcc---aagttcccatctaacctcataagtgtcagc-ttcttattcttcctcttccac
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52106444 53 -  59632846 agaggcagcctgaccctctgactttcggtacattcttaagtgtcccagc-ttct-----------------
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40426121 194 + 149736546 I

a score=1347262.000000
s hg38.chr7_GL383534v2_alt     56989 405 +    119183 ctcc-tcctcc----tcttg-ttcagaagtttactctcttcc-ttcat-aactgtctgcccagtagacttcaaactccaacatcagata--caaagaacagccttatatagattgtctaa-cagctcccacag----ttgcataaaaccaaatccctgcaacaaattcctttatgtatctcctagtttttcggttcctctgattgaactttgaccaacacaatatgcac--atttctactgactacatccctaggaatagaattgctttaaaaatgtttgcgtcactgcaaactaagacactttcaatgattcccaaagtagtATTTCCC-AAGCTTAGGTTAATAGGGCTTCTGCAAAAAAGAAAACAAAATTTTGTGAAATGTGTG-----TGTTTTTGGCCAAATTATCTTAGCttaaacaaagc
s panTro4.chr7             143156917 405 + 161824586 ctcc-tcctcc----tcttc-ttcagaagtttactctcttcc-ttcat-aactgtctgcccagtagacttcaaactccaacatcagata--caaagaacagccttatatagattgtctaa-cagctcccacgg----ttgcataaaaccaaatccctgcaacaaattcctttatgtatctcctagtttttctgttcctctgattgaactttgaccaacacaatatgcac--atttctactgactacatccctaggaatagaactgctttaaaaatgtttgcgtcactgcaaaataagacactttcaatgattcccaaagtagtATTTCCC-AAGCTTatgttaatagggcttctgcaaaaaagaaaacaaaattttgtgaaatgtgtg-----tgtttttggccaaattatcttagcttaaacaaagc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138978115 408 + 157549271 ctccttcctcc----tcttctttcacaagtttactctcttcc-ttcataaaccgtctgcccagtagacttcaaactccgacatcagaca--caaagaatagccttatatagattgtctaa-cagctcccacag----ttgcataaaaccaaatccctgcaacaaattcctttgtgtatctcctagtttttctgtttctctgattgaactttgaccaacacaatatgcac--atttctactgactacatccctaggaatagaattgctTTAAAAATGTTTGCATCACTGCAAACTAAGACACTTTCAATGATTCCCAAGGTAGTATTTCCC-AAGCTTATGTTAATAGGGCTTCTGCAAAAAAGAAAACAAAATTTTGTGAAATGTGTG-----TGTTTTTGGCCAAATTATCTtagcttaaacaaagc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93098797 398 + 110113093 ctcc-ttctac----tcttc-ttcacaagtttactcttttcc-ttcat-aactgtctgcccagtagacttcaaactccaacatcagaca--caaagaacagccttatatagattgtctaa-cagctcccacag----ttgcataaaaccaaatccctgcaacaaattcctttatgtatctcctagtttttctgtt--tctgattgaactttgaccaacacaatatgcac--atttctactgactacatccctaggaatagaattgctTTAAAAATGTTTGCATCACTGCAAACTAAGACACTTTAAATGATTCCCAAAGTAGTATTTCCC-AAGCTTatgttaatagggcttctgcaaaaacgaaaacaaaattttgtgaaatgtgtg-----tgtttttggccaaa-----ttagcttaaacaaagc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180993630 404 + 198365852 ctgc-ttctcctct-tcttc-ttcacaggtttactctcttcc-ttcat-aactgtctgcccagtagacttcaaattccaacagcagaca--caaataacagccttatatagattgtctaa-cagctcccacag----ttgcataaaaccaaatccctgcaacaaactcctttatgtatctcctagtttttctgtttctttgattgaactttgacCATCACAATATGCAC--ATTTCT----ACTACATCCCTAGGAATAGAATTGCTTTAAGAATGTTTGCATAACTGCAAACTAAGACACTCTCAATGATTCCCAAAGTAGTATTTCCC-AAGCTTATGTTAATAGGGCTTCTGCAAAAAAGAAAACAAAATTTTGTAAAATGTCTG-----TTTTTTTGGTCAAGTTATCTTAGCttaaacaaagc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174739515 404 + 192294377 ctgc-ttctcctct-tcttc-ttcacaggtttactctcttcc-ttcat-aactgtctgcccagtagacttcaaattccaacagcagaca--caaataacagccttatatagattgtctaa-cagctcccacag----ttgcataaaaccaaatccctgcaacaaactcctttatgtatctcctagtttttctgtttctttgattgaactttgacCATCACAATATGCAC--ATTTCT----ACTACATCCCTAGGAATAGAATTGCTTTAAGAATGTTTGCATAACTGCAAACTAAGACACTCTCAATGATTCCCAAAGTAGTATTTCCC-AAGCTTATGTTAATAGGGCTTCTGCAAAAAAGAAAACAAAATTTTGTAAAATGTCTG-----TTTTTTTGGTCAAGTTATCTtagcttaaacaaagc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163410685 401 + 180432695 ctgc-ttctcc----ccttc-ttcacaggtttactctcttcc-ttcAT-AACTGTCTGCCCAGTAGACTTCAAATTCCAACAGCAGACA--CAAATAACAGCCTTATATAGATTGTCTAA-CAGCTCCCACAG----TTGCATAAAACCAAATCCCTGCAACAAACTCCTTTATGTATCTCctagtttttctgtttctttgactGAACTTTGACCATCACAATATGCAC--ATTTCT----ACTACATCCCTAGGAATAGAATTGCTTTAAGAATGTTTGCGTAACTGCAAACTAAGACACTCTCAATGATTCCCAAAGTAGTATTTCCC-AAGCTTATGTTAATAGGGCttctgcaaaaaagaaaacaaaattttgtgaaatgtctg-----tttttttGGTCAAGTTATCTTAGCTTAAACAAAGC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110439563 404 + 127223203 ctcc-ttctcctct-tcttc-ttcacaggtttactctcttcc-ttcat-aactgtctgcccagtagacttcaaactccaacagcagaca--caagtaacagccttatatagattgtctaa-cagctcccacag----ttgcataaaaccaaatccctgcaacaaattcctttatgtatctcctagtttttctgtttctttgattgaattttgacCACCACAATATGCAC--ATTTCT----ATTACATCCCTAGGAATAGAATTGCTTTAAGAATGTTTGCATAACTGCAAACTAAGACACTCTCAATGATTCCCAAAGTAGTATTTCCC-AAGCTTATGTTAATAGGGCTTCTGCAAAAAAGAAAACAAAATTGTGTGAAATGTCTG-----TTTTTTTGGTCAAGTTATCTTAGCttaaacaaagc
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23787800 394 - 128169293 ctct-----------tcctc-ttcacaaatttactctcctcc-ttcaa-aaccgtctgcccagaagacttcaagctccaacatcacaca--aagacaacagccttatatagatggtctaa-cagctcccacag----ttgcataaaatcaaatccctgcaacaaattcctttatatatctcctagtttttctgtttctctgattgaact----ctaacATAgtatgcac--atttctactggctacattcctaggaatagaattgctTTAAAAATGTTTGCATCACTGCAAACTAAGGAACTTT-AATTATTCCCAAAGTAGTATTTCCC-AAGCTCATGCTAATAGGGATTCTGCAAACAAGAAAACAAAATTTTGTGAAGTGTGTG-----TTTTTTTGGCCAGATTATCTTAGCttaaacaaagc
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40426315 308 + 149736546 -------CCCCTCTGCCTCC-TTCCCAAGATCACTGTCCTCCTTTTAC-ATCCATCTACCCA-TGGATTCCAAGCTCC-----------------------------ATGGACCGGCTAAGTAGTCCTCACAGCACATTACATAAGTTCTAGTGTCTGCAGC-AATCCTTGCATGGCTGTCCTAGCCGTT--GTTCCCCTGTCTGAATCTTGACTAACACGATTCCCAC---------------ACGTTCCTG------------------------TTACTTCACTGCAAACCAAGGAATCTT-------------------------T-AGGCAAATATGAACAGGGCTTCTTTAAAAAA-------------TGTAAAGTATGTGAGACACTTTTATGGCTAAATTTCCTTAGGTGAAACAAAGA
i mm10.chr6                I 194 I 121
s canFam3.chr16             52106497 384 -  59632846 ------------ct-ccgtc-ttcccaaccatactctcctct-tccat-cactgcccgcccaacagagttcaagctccatcatcaggcagcaggacagcagcctcacacagaccgtctacccagctcccccaa----ctgtgtgagactgaattcttgcaataaatcccttcagacatctcctagtggttctgttcctttgattaatttttga----cACAACATGCACACATTTCTGTTGACAACATCCCTGGGAGCAAAACTCCTGCAAAAATGTCTACATCACTACAAACTAAGAAATCTTTAACAATTCCCAAGGCAGTGTTTCCCAAAGCTTACGGTAATAGGGCTTCTGTGAAAAATAAA-------TTTTTAAAAT----------GGACTTTGGCCACATTATCTCAGGTTAAAGGA---
i canFam3.chr16            C 0 C 0

a score=568871.000000
s hg38.chr7_GL383534v2_alt     57394 179 +    119183 tagacacattcctttattgaagtacttctcagagcctttaatatgccactctgc-atcgtgaatctccgtgagatcaatacagtgcttaatgtttccccaaattatc-----------------------------ttttttaaaggagtatctta-----------------------------------aatctttt----------------------taaaaggag----------------------------tatcttaagagactaattttatagaaggcac--------tttTT
s panTro4.chr7             143157322 179 + 161824586 tagacacattcctttattgcagtatttctcagagcctttaatatgccactctgc-atcgtgaatctccatgagatcaatacagtgcttaatgtttccccaaattatc-----------------------------ttttttaaaggagtatctTA-----------------------------------AATCTTTT----------------------TAAAAGGAG----------------------------TATCTTAAGAGACTAATTTTATAGAAGGCAT--------TTTTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138978523 179 + 157549271 tagacacattcctttattgcagaacttctcagagcctttaataagccactctgc-atcatgaatctccatgagatcaatacagtgcttaatgtttccccaaattatc-----------------------------tTTTTTAAAGGAGTATCTTA-----------------------------------AATCTTTT----------------------TTAAAGGAG----------------------------TATCTTAAGAGACTAATTTTATAGAAGGTAT--------TTTTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93099195 179 + 110113093 tagacacattcctttattgcagaacttctcagagcctttcatctgccactctgc-atcgtgaatctccatgagagcaatacagtgcttaatgtttccccaaattgtc-----------------------------ttttttaaaggagtatctta-----------------------------------aatctttt----------------------ttcaaggag----------------------------tatcttaagagactaatTACATAGAAGGCAt--------ttttt
i nomLeu3.chr13            C 0 I 1861
s rheMac3.chr3             180994034 178 + 198365852 tagacacattcctctattgcagaacttctcagagcctttaatatgccactctgc-atcgtgaatctccatgagatcaatacagtgcttaatgtttccccaaattatc-----------------------------ttttttaaaggagtatctTA-----------------------------------AG-ATTTT----------------------TTAAAGGAG----------------------------TCTCTTAAGATACTCATTTTATAGAAGGTAT--------TTTTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174739919 178 + 192294377 tagacacattcctctattgcagaacttctcagagcctttaatatgccactctgc-atcgtgaatctccatgagatcaatacagtgcttaatgtttccccaaattatc-----------------------------ttttttaaaggagtatctTA-----------------------------------AG-ATTTT----------------------TTAAAGGAG----------------------------TCTCTTAAGATACTCATTTTATAGAAGGTAT--------TTTTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163411086 178 + 180432695 TAGACACATTCCTCTATTGCagaacttctcagagcctttaatatgcCACTCTGC-GTCGTGAATCTCCATGAGATCAATACAGTGCTTAATGTTTCcccaaattatc-----------------------------ttttttaaaggagtatctta-----------------------------------ag-atttt----------------------ttaaaggag----------------------------TCTCTTAAGATACTCATTTTATAgaaggcat--------ttttt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110439967 178 + 127223203 tagacacattcctctattgcagaacttctcagagcctttaatatgccactctgt-attgtgaatctccatgagatcagtaaagtgcttactgtttccccaaattatc-----------------------------ttttttaaaggagtatctTA-----------------------------------AG-ATTTT----------------------TTAAAGGAG----------------------------TCTCTTAAGATACTCATTTTATAGAAGGCAT--------TTTTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23788194 180 - 128169293 tagacacattccttcactgcagaacttctcagagcctttaatatgccactccgc-attgtgagtctccatgagatcaattcagtgcttaatgtttccccaagttatc----------------------------tttttttaaaggagtatctta-----------------------------------aatctttt----------------------ttaaaggag----------------------------catcttaagagactaattttATAGGAGATAA--------ATATA
i calJac3.chr8             C 0 I 23
s mm10.chr6                 40426744 293 + 149736546 tacatacatacaCAtattgtaggacttcatggagcatttagtatgccatgttgcaataatgaatctcagagagatcaacac---------tgttttccaaaatcattCCGACACTGCCTCTGAGTTTTGttgttttctgtttgggacagggtcttatactctagcctaagctgaccagacactcactgcccaatccttcaccctcagcccaagagctagagttatgggagtgggtcaatatgcctggTGCAATAGTTCTATTTTTGAGGAGCAGTTTTGGAGAAGGCCTCATTGGTGTTTTT
i mm10.chr6                I 121 C 0
s canFam3.chr16             52106881 154 -  59632846 CAGACACA---ctttaatgcagaacttcgcagaggctttaggatgttactctgc-actgtgaatttctatgagacc----------tcaatgtttcc--aaattttc-----------------------------tgggccaataga----ctta-----------------------------------------tt----------------------tttaagaag----------------------------tatcttaagggactagttttATAGAAGTTTT--------TTTTT
i canFam3.chr16            C 0 I 8

a score=214511.000000
s hg38.chr7_GL383534v2_alt     57573 70 +    119183 AAAAAAAAAAAGAAATACAGGTATATCAGGTG-tgcaagctgtccttccatatccactcttctcttcttat
s panTro4.chr7             143157501 68 + 161824586 TTAAAAAAA--GAAATACAGGTATATCAGGTG-tgcaagctgtccttccatatccactcttcccttcttat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138978702 67 + 157549271 TAAAAAAA---GAAATACAGGTATATCAGGTG-tgcaagctgtccttccatatccactcttcccttcttat
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93101235 70 + 110113093 aaaaaaAAAAAGAAATACAGGTATATCAGGTG-tgcaagctgtccttccatatccactcttcccttcttat
i nomLeu3.chr13            I 1861 C 0
s rheMac3.chr3             180994212 67 + 198365852 TAAAAAAA---GAAATATAGGTATATCAGGTA-TGCAAGCTGTCCTTCAATATCCACTCTTCCCTTCTTAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174740097 67 + 192294377 TAAAAAAA---GAAATATAGGTATATCAGGTA-TGCAAGCTGTCCTTCAATATCCACTCTTCCCTTCTtat
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163411264 67 + 180432695 taaaaaaa---gaaatataggtaTATCAGGTA-TGCAAGCTGTCCTTCAATATCCACTCTTCCcttcttat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110440145 67 + 127223203 TAAAAAAA---GAAATATAGGTATATCAGGTA-TGCAAGCTGTCCTTCAATATCCACTCTTCCCTTCTtat
i chlSab2.chr21            C 0 I 37
s calJac3.chr8              23788397 65 - 128169293 TTTAAAAA---GAAATAGAG--ATATCAGGTA-tgcaagctgtccttcagaatccactcttccctccttat
i calJac3.chr8             I 23 C 0
s mm10.chr6                 40427037 51 + 149736546 ----------AGACATGGTGGtataacagatactgcaagctgcccctcaatatccattctt----------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52107043 60 -  59632846 ----------AAATATGCTAGTATACAaggagctgcaagttaacc-tcagtgtccacccttcctttcttat
i canFam3.chr16            I 8 C 0

a score=4912.000000
s hg38.chr7_GL383534v2_alt     57643 2 +    119183 at
s panTro4.chr7             143157569 2 + 161824586 at
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138978769 2 + 157549271 at
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93101305 2 + 110113093 at
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180994279 2 + 198365852 AT
i rheMac3.chr3             C 0 I 12
s macFas5.chr3             174740164 2 + 192294377 at
i macFas5.chr3             C 0 I 39
s papAnu2.chr3             163411331 2 + 180432695 at
i papAnu2.chr3             C 0 I 39
s calJac3.chr8              23788462 2 - 128169293 at
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52107103 2 -  59632846 ag
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40427088 0 + 149736546 C
e chlSab2.chr21            110440212 37 + 127223203 I

a score=914424.000000
s hg38.chr7_GL383534v2_alt     57645 864 +    119183 gaatcagaacctgttatttttagcttggtgcatggccttccaaatgaaggctatgtttctcagtacctt------------------catgagtgaattctggtcagtgtcatgtggacagaaatgaggtgcatcacttccagaaggtgcctgaaaggcaaggagcacattgcccctttctccaccctgctacctggaatgtggatgtagcatcgtatcacag---agg----ggatgctggagccattggtcaacgtgggtctaggtccctggatgaccctggagatttgggccagtattctagccccaggc-tgctatcacctgatcgttacatgaaaaagaaatagactcctatcttgattatgccactgttgat-ttcggcttctagtattcatgtcc-agcctatgtcctacttagtacaGCTGACCTAGAAGATAAAGTCCCCATTCCTTAGCCTGGTTCTC-AAACCCTCTTCCTTGCTCCTCTGTG--CCTACCAAAT--------CTAATTGCACAGAAATGGAAAGGAACAGAGGGAGCGAATGACATACTGTTAGTTACATCCTTCACTCCTAGGTGGACATAAGCCCATCTGGGTTGGGAAGAAAGGTCCATTAG----AGGCTGGCAAATCAAAGAACAGGGCACAGGCTCCAGAACACCACTCTGGGGAGAGGTATCCTTATCCCATGGCAAGCACATTCCTGCTGACAA-CTCCTTGAATGAAAGGGAAGTAGGTAGAGCTACTATGGCCCTTAT----CTCTACATATGATAATCAT-GTCTTTGACGTCTG---------------TCTCTGCA-GGAGTCTGTTAACTTTTACAAGGTGAGAA-----------------------------------------------TTTTCCTTGTCTTCACATTTCTATATAGTATCATGCCTTGCACAGGACAGAATGGGTATT---------TAAAAAAA-----
s panTro4.chr7             143157571 864 + 161824586 gaatcagaacctgctatttttagcttggtgcatggccttccaaatgaaggctatgtttctcagtacctt------------------catgagtgaattctggtcagtgtcatgtggacagaaatgaggtgcatcacttccagaaggtgcctgaaaggcaaggagcacattgcccctttctccaccctgctacctggaatgtggatgtagcattgtatcacag---agg----ggatgctggagccatcggtcaacgtgggtctaggtccctggatgaccctggagatttgggccagtattctagccccaggc-tgctatcacctgatcgttacatgaaaaagaaatagactcctatcttgattatgccactgttgat-ttgggcttctagtattcatgtcc-agcctatgtcctacttagtacaGCTGACCTAGAAGATAAAGTCCCCATTCCTTAGCCTGGTTCTC-AAACCCTCTTCCTTGCTCCTCTGTG--CCTACCAAAT--------CTAATTGCACAGAAACAGAAAGGAACAGAGGGAGCGAATGACATACTGTTAGTTACATCCTTCACTCCTAGGTGGACATAAGCCCATCTGGGTTGGGAAGAAAGGTCCATTAG----AGGCTGGCAAATCAAAGAACAGGGCACAGGCTCCAGAACACCACTCTGGGGAGAGGTATCCTTATCCCATGGCAAGCACATTCCTGCTGACAA-CTCCTTGAATGAAAGGGAAGTAGGTAGAGCTACTATGGCCCTTAA----CTCTACATATCATAATCAT-GTCTTTGACCTCTG---------------TCTCTGCA-GGAGTCTGTTAACTTTTACAAAGTGAGAA-----------------------------------------------TTTTCCTTGTCTTCACATTTCTATATAGTATCATGCCTTGCACAGGACAGAATGGGTATT---------TTAAAAAA-----
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138978771 863 + 157549271 gaatcagaacctgctagttttagcttggtgcatggtctcccgaatgaaggctatgtttctcagtacctt------------------catgagtgaattctg----gtgtcatgtggacagaagtgaggtgcatcacttcccgaaggtgcctgaaaggcaaggagcacactgcccctttctccaccctgctacctggaatgtggatgtagcatcgtatcacag---aggggatggatgctggagccatcagtcaacgtgggtctaggtccctggatgaccctggagatttgggccagtgttctagccctaggc-tgctatcacctgattgttacatgagaaacaaatcgactcctatcttgatcatgccactgttgat-ttggacttctagtattcatgtcc-agcctatgtcctacttagtacaGCTGACCTAGAAGATAAAGTCCCCATTCCTTAGCCTGGTTCTC-AAACCCTCTTCCTTGCTCCTCTGTG--CCTATCAAAT--------CTAATTGCACAGAAACAGAAAGGAACAGAGGGAGAGAATGACATACTGTTAGTTACATCCTTCACTTCTAGGTGGACATAAGCCCTTCTGGGTTGGGAAGAAAGGTCCATTAG----AGGCTGACAAATCAAAGAACAGGGCACAGGCTCCAGAACACCACTCTGGGGAGAGGTATCCTTATCCCATGGCAAGCACATTCCTGCTGACAA-CTCCTTGAATGAAAGGAAAGCAGGTAGAGctactatggcccttat----ctctacatatcataatcat-gtcttcgatgtctg---------------tctctgca-gaagtctgtgaacttttacaaggtgggaa-----------------------------------------------ttttccttgtcttcacatttctatatagaatcatgccttgcacaggacagaataggtatt---------t-aaaaaa-----
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93101307 860 + 110113093 gaatcagaacctgctatttttagcttggtgcatggccttccaaatgaaggctatgtttctcagtacctt------------------catgagtgaattctggtcagtgtcatgtggacagaaatgaggtgaatcacttccagaaggtgcctgaaaggcaaggagcacactgcccctttctccaccctgctacctggaacgtggatgtagcatcgtatcacgg---agg----ggatgctggagccatcgatcaacgtgggtcttggtccctggatgaccctggagatttgggccaatgttccagccctaggc-tgctatcacctgattgttacatgaaaaagaaatagactcctatcttgattatgccactgttgat-ttgggcttccagtattcatgtcc-agcctatgtcctacttagtacaGCTGACCTAGAAGATAAAGTCCCCATTCCTTAGCCTGGTTCTC-AAACCCTCTTCCTTGCTCCTCTGGG--CCTACCAAAT--------CTAATTGCACAGAAATGGAAAGGAACAGAGGGAGCGAATGACATACTGTTAGTTACATCCTTCACTTCTAGGTGGACATAAGCCCATCTGGGTTGGG----AAGGTCCATTAG----AGGCTGGCAAATCAAAGAATGGGGCACAGGTTCCAGAACACCACTCTAGGGAGAGGTATCCTTATCCCATGGCAAGCACATTCCTGCTGACAA-CTCCTTGAATGAAAGGAAAGTAGACAGAGCTACTATGGCCCTTAT----CTCTACATATCATAATCAT-GTCTTCCATGTCTG---------------TCTCCGCA-GGAGTCTGTGAACTTTTACAAGGTGGGAA-----------------------------------------------TTTTCCTTGTCTTCACATTTCTATATAGTATCACGCCTTGCACAGGACAGAATGGGTATT---------TTAAAAAA-----
i nomLeu3.chr13            C 0 C 0
s calJac3.chr8              23788464 852 - 128169293 gaaccggaacctgctaggtttagtttggtgcatggccttccaaatgaagcct---cttctcagtatctt------------------catgagtaaattctggtcagtgtcatgtggacagaagtgaagtacactgcttccagaatgtgcctgaaaggcaaggagcactcta-ccctttctccaccctgcagcctggaatgtggatgtggtgacgtatcacag---agg----ggatgctggagccataggccgacctgggcctaggtccctggacgaccctggagatctgagccagtgttctagctctaggc-tgctatcacctgactggcacatgaaaaagaaataaaatcctatcttgattacaccactgttgat-ttggCTCTCTGGTGTTCATGTCC-AACGCACGTCCTACTTAGTACAGCTGACCTAGATGATAAAGTCCCTGTTCCTTAGCCTGGCTCTC-AAACCCTCTTCCTTGCTCCTCTGTG--CCTGGCAAAT-------CCTAACTGCACAGAAATGGAAAGAAATGGAGAGAGTGAATGACATACTGTTAGTTACATCCTTCACTTCTAGGTAGGCAGGAGCCAATCTGGA---------AAGGTTCATCAG----AGGCTGGCAAATC-AGGAACAGGGCACAGGCTCCAGAACACCACTCTGGGGAGAGGCATCTTTATTCCATGGGAAGCACATTCCTGCTGACACTCTCCTTGAATGAAAGGAAAGTAAGTATAGctactatggcccttat----ctctatctatcataatcat-gtcttcgatgtctg---------------tctcccca-ggagtctgtgaacttttacaaggtgggaa-----------------------------------------------ttttccttgtcttCACATCTCAACATAATATCAAGCCTTATACAGGACAGAATGGGTATT---------TTTAAAAA-----
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40427088 880 + 149736546 -----aaaacctgccctttttagcttggtacatgacctccc-aatgacggct--gttcctccat-cctt------------------cctgcatgta----ggt--gtgggatccagacagaagtgaggcacatagctaccgaaatggacctgaaagggaagggacacactgcacttttctctgtcatgctacctaacac-tggacggag-gtgatgTCATGATCTGAG----GAACAACGACTCTATAAACCAACAAGACCCCAGGTCTCT-GATGGCCCCACTGATCTGAACTCATATT-TGTCTTTAGGCAAGCTATTAC-------ACACATGAAAAGGGAAGGGA-TTCTATCTTGACTA---CAGTGTAGCTACTGGATACCTGGTATTTATGACCAAGTTCATGTTCTACTTACTACAGCTGAAATAGAGGATAAAGTCCCCATTCTTCAGCCTCGTTCTCAAAACCCTCCTCACTGTAGCTCTGTG--CCTCACCAACGCTCATCACTCATCGTAAGGATGCTGAGAGAAGGAGAGGGTG---------TCCTGTCTGCTGCACCCTTTCCTTTTAGGAAG---CAAGCCCTTCTGGGTTCGG-AGCCAGGCACCTCAGAA-CAGGTAGGTGAGTCATAG-ACAGGACTGGGGCTTCAGAACACCCTGCTGGGCGAAG----------TTCAT----------TTTCTGCTGATACCCTCCTTGAAGAAA----AACCAGGCATAGGCTCCACAGAACCTATCACGCTTTAGATGCC-TAACCTC-GCCCCCCCCCCCCAAACACACACATACACACTCCCCA-GGACTCTGTAAGTCTCTGAACGATGGGAGAGGGGGAATTTTGTTTGAtttttttttttttttttttttttttttttttttttttttGCTCACATCCCAACATAGCTCGGTGCCTAGGACAAGAGAGGAAGGGCAGT---------AAAACCAA-----
i mm10.chr6                C 0 C 0
s canFam3.chr16             52107105 844 -  59632846 gggctagaatatcctatatttagcctggcatgtagccttccaacggacaactatgtttctcagcatcttcttgcatataggtgtgtccacgagtccattctggccagtgggatgcagacag-agtgaggtgtggagttgccaaggagcaccttacagggaa-gagaacactgccccttcctccatcctgctgcctggaatgtggatgtgg-------tgacag---ctg-------------------------tcacgaatctaggtccccggatgaccccatggatctgagccagcattccagctctacaccagctatctcctg----ttgcaggaaagagaaacaaacccctatcttgatgaagccactgttcat-ttgggtccctggtattcccggccaaatcCGTGTGTTACTTAATACCACTGACCTATAGAATCAAGCCCCCATTCCTCAGCCTAGTTCTCAAAGCCGTTATCCTTGCTCCCCTGTGCCCCTGTCCAAT-------CCTCACTGTACAGAAACTGAAAGACTGAGATGGAAGGAATGACATCCTGGTAGTGACATGATTAACTTCGAGATGGATGCAAGTCCCTTAGGG-------GAAAGTTCCATTGGGGTCAGGCTGGCAGATCATGGAAT-GAGCACAAGCTCCA-AACACAGCTCTGGGAATAGTCCTCTTTATGTCGCAGGAAGGACATCTCTGCTTACACACCCCTTGAACTCAAGGAAAGTAAATGAAGCT-CTGTAGTCCTCAC----CCCAGTCTAT-ACAGTCACGGTCTAAGATGTCTA---------------TCTCCGCAGGGACTCCATAAA---------------AA---------------------------------------------------CTTTGTC-TCATATCCCAACACAGCACACTGCTTAGCACAGGACAGGAGGGGTATTAAAGAGTAATAAAAGAAAGAAA
i canFam3.chr16            C 0 C 0
e chlSab2.chr21            110440212  37 + 127223203 I
e papAnu2.chr3             163411333  39 + 180432695 I
e macFas5.chr3             174740166  39 + 192294377 I
e rheMac3.chr3             180994281  12 + 198365852 I

a score=303746.000000
s hg38.chr7_GL383534v2_alt     58509 104 +    119183 AACAGA-------------TTTATTAAGGGCACGCATGTGTT--TA---AAAAAAC----TGAtgaattagtgttaattaccttagcaatagtaataatattgtagttacataggaaa-----------------------------------------------------------------------atgttctt
s panTro4.chr7             143158435 175 + 161824586 AACAGA-------------TTTATTAAGGGCACGCATGTGTT--TA---AAAAAAT----TGATGAATTAGTGTTAATTACCTTAGCAATAGTAATAATATTGTAGTTACATAGGAAATGTTTAAAAAAACTGAtgaattagtgttaattaccttagcaatagtaataatcttgtagttacataggaaaatgttctt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138979634 104 + 157549271 AACAGA-------------TTTATTAAGGGCACGCATGTGTT--TT---AAAAAAC----TGATGAGttagtgttaattaccttagaaatagtaataatattgtagttatataggaaa-----------------------------------------------------------------------atgttcct
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93102167 104 + 110113093 AACAGA-------------TTTATTAAGGGCACGCATGTGTT--TA---AAAAAAC----TGAtgaattagtgttaattaccttagaaatagtaataatattgtagttacacaggaaa-----------------------------------------------------------------------atgttctt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180994293 100 + 198365852 AACAGA-------------TTTATTAAGGGCATGC----ATT--TA---AAAAAAC----TGAtgaattagtgttaattaccctagaaatagtaataatattatagttatataggaaa-----------------------------------------------------------------------atgttctt
i rheMac3.chr3             I 12 C 0
s macFas5.chr3             174740205 100 + 192294377 aacaga-------------tttattAAGGGCATGC----GTT--TA---AAAAAAC----TGAtgaattagtgttaattaccctagaaatagtaataatattatagttatataggaaa-----------------------------------------------------------------------atgttctt
i macFas5.chr3             I 39 C 0
s papAnu2.chr3             163411372 104 + 180432695 aacaga-------------tttattaAGGGCATGCATGTGTT--Ta---aaaaaaC----TGATGAATTAGTGTTAATTACCCtagaaatagtaataatattgtAGTTATATAGGAAA-----------------------------------------------------------------------ATGTTCTT
i papAnu2.chr3             I 39 C 0
s chlSab2.chr21            110440249 104 + 127223203 AACAGA-------------TTTATTAAGGGCATGCATGtgtt--ta---aaaaaac----taacgaattagtgttaattaccctagaaatagtaataatattatagttatataggaaa-----------------------------------------------------------------------atgttctt
i chlSab2.chr21            I 37 C 0
s calJac3.chr8              23789316  94 - 128169293 ACCAG-----------------ATTAAGGAAATGCATGTGTTAAAA---AAAAAAC----TGATAAATTAGGgttaattaccttagaaatagtaataa--------ctatgtaggaaa-----------------------------------------------------------------------atgttctt
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40427968 120 + 149736546 AACAAACTGGACAATCGTTTTTCTTAGGAACAAGCATGTCTT--TATTCAGCTCAT----TGAtgaatcagtggtaattacccgaggcgtgggaatgacactctgcctatacagggaa-----------------------------------------------------------------------gctgcctt
i mm10.chr6                C 0 C 0
s canFam3.chr16             52107949 100 -  59632846 AACACC-------------TTTATTGCAGACTGGAATTTTTT--AA---AGAAAACTAATTGATGAATTAACGTTAATTACTCTAGGGGTA--------ATTGTGGTTATGTAAGAAA-----------------------------------------------------------------------ATGTATTT
i canFam3.chr16            C 0 I 404

a score=4095.000000
s hg38.chr7_GL383534v2_alt     58613 1 +    119183 a
s panTro4.chr7             143158610 1 + 161824586 a
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138979738 1 + 157549271 a
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93102271 1 + 110113093 a
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180994393 1 + 198365852 a
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174740305 1 + 192294377 a
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163411476 1 + 180432695 A
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110440353 1 + 127223203 a
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23789410 1 - 128169293 a
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40428088 1 + 149736546 a
i mm10.chr6                C 0 C 0
e canFam3.chr16             52108049 404 -  59632846 I

a score=1016266.000000
s hg38.chr7_GL383534v2_alt     58614 274 +    119183 tccttagaaggtttatactcaaacgtttaggagtgacatattatcatatctg-tgac----ttactttcaaatggttca-------------------ggaaaaaaaggcatatccatatCTGTATATagtcagttctacttttatcacttactggatttgtgtcaatgcaacagatgtacttgagagcaatttgagcacagggaatttcatattcac---ttatgctatagactcaatgcaatcccaatc-------aaaatcccagcaaattattttgcggatatcgacaagttaattccaaagct
s panTro4.chr7             143158611 274 + 161824586 tccttagaaggtttatactcaaacgtttaggagtgacatattatcatatctg-tgac----ttacttccaaatggttca-------------------ggaaaaaaaggcatatccatatCTGTATATagtcagttctacttttatcacttactggatttgtgtcaatgcaacagatgtacttgagagcaatttgagcacagggaatttcacattcac---ttatgctatagactcaatgcaatcccaatc-------aaaatcccagcaaattattttgcggatattgacaagttaattccaaagct
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138979739 274 + 157549271 tcctcagaaggttaatactcaaacgtttaggagtgacatattgtcatatctg-tgac----ttactttcaaatggttca-------------------ggaaaaaaaggcatatccatatTTGTATATagtcagttctacttttaccacttactggatttatgtcaatgcaacacatgtacttgagagcaatttgagcacaggggatttcccattcac---ttatgctatagactcaatgcaattccaatc-------aaaatcccagcaaattattttgtggatattgacaagttaattccaaagct
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93102272 269 + 110113093 tccttagaaggtttatactcaaacatgtaggagtgaca-----tcatatctg-tgac----ttactttcaaatggttca-------------------ggaaaaaaaggcatatccatatCTGTATATagtcagttctacttttatcacttactggatttatgtcaatgcaacagatgtactcgagagcaatttgagcacagggaatttcacattcac---ttatgctatagactcaatgcaatcccaatc-------aaaatcccagcaaattattttgtgtatattgacaagttaattccaaagct
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180994394 274 + 198365852 tccttagaaggtttatattcaaacatttaggagtcacatattatcatatctg-tgac----ttactttcaaatggttca-------------------ggaaaaaaaggcatatccagaTCTGTATATagtcagttctacttttatcacttactggatttgtgtcaatgcaacagatgtacttgagagcaatttgagcaaagggaatttcatattcac---ttatgctatagactcaatgcaatcccgatc-------aaaatcccagcaaattattctgtggatattgacaagttaattccaaagct
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174740306 274 + 192294377 tccttagaaggtttatactcaaacatttaggagtcacatattatcatatctg-tgac----ttactttcaaatggttca-------------------ggaaaaaaaggcatatccagaTCTGTATATagtcagttctacttttatcacttactggatttgtgtcaatgcaacagatgtacttgagagcaatttgagcaaagggaatttcatattcac---ttatgctatagactcaatgcaatcccgatc-------aaaatcccagcaaattattctgtggatattgacaagttaattccaaagct
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163411477 274 + 180432695 TCCTTAGACGGTTTATACTCAAACATTTAGGAGTCACATATTATCATATCTG-TGAC----TTACTTTCAAACGGTTCA-------------------GGaaaaaaaGGCATATCCAGATCTGTATATAGTCAGTTCTACTTTTATCACTTACTGGATTTGTGTCAATGCAACAGATGTACTTGAGAGCAATTTGAGCAAAGGGAATTTCATATTCAC---TTATGCTATAGACTCAATGCAATCCCgatc-------aaaatcccagcaaattaTTCTGTGGATATTGACAAGTTAATTCCAAAGCT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110440354 274 + 127223203 tccttagaaggtttatactcaaacatttaggagtcacatattaccatatctg-tgac----ttactttcaaatggttca-------------------ggaaaaaaaGGCATATCCAGATCTGTATATagtcagttctacttttatcacttactggatttgtgtcaatgcaacagatgtacttgagagcaatttgagcaaagggaatttcatattcac---ttatgctatagactcaatgcaatcccgatc-------aaaatcccagcaaattattctgtggatattgacaagctaattccaaagct
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23789411 277 - 128169293 ttcttagaaggtttatcctcaaacatttaggaatggcatattatcgtatcta-tgac----ttactttcaaatggttta-------------------ggaaaaaaaGACGTATCCATATCTGTATATagtcagttctacttttaccacttactggatttgtgtcaatgcaacagatgtacttgagagcaatttgggcacaaggaatttcacattcacattctatgcaatagactcaatgcaatcccaatc-------aaaatcccagcaaattattttgtggatattgacaagttaattccaaagct
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40428089 293 + 149736546 ttctgaggaagcatattcttaattatttaggagtgagattcaagcatcattg-caac----ttattttcaaagagttcggGGCGGGGGGAGGCTTGGCGGGGGGAGAGGTATATCTAAATCCATATGATATCAACGCCATTTACAATGTCTGTTTAGCGAGGGCCAAGGCAGCTGAT----TAGGGAACAATCTAGACACAGATATTTGTACATT------TTCTATtacagattcaatgaaaccccaatttttaaaaagcaacccagcttgtcatttaataaataatggcaaattaattctaaagtt
i mm10.chr6                C 0 I 141
s canFam3.chr16             52108453 267 -  59632846 ttcttaggaggtttatactcatgaatttagcagtaaagtgtcatcagacatgatgatgcgattactttcaaatggctca-------------------ggaaaaaaaaa-------atctctgtatatagtcagttctgatggaat-gcttgctgaattagtgtcaacacgactgaaacattagagaacaatctgagcatggggaacttcacatttct---ttatgctgtagatccagtgcaatctcaatc-------aaaatccca---agttatt-tgtggatatagaaaaattaattctaaagtc
i canFam3.chr16            I 404 C 0

a score=1106536.000000
s hg38.chr7_GL383534v2_alt     58888 346 +    119183 tacatggaaaggcaagagaccccaaatagccaacataatactgaagaacaataaaattggaagacgaacaatgcacccaacttcgagactta--tataaa------attaatcaagagagtaggtattggtgaaatatcagacaaatagattaatggaacagaatagagagccttgaaacagacccacacaaatc-aatcacataatctttgccaaaggaacaaaggcaatataatggagaaaagacagtctttacaataaatggtgctgaaacaagtggacatctacatgc-------------aaagcaatgaaactagacacctactttacccctttcacaaaaatttattcaatatggaAAGTA
s panTro4.chr7             143158885 346 + 161824586 tacaaggaaaggcaagagaccccaaatagccaacataatactgaagaacaataaaattggaagacgaacaatgcatccaacttcgagactta--tataaa------attaatcaagagagtaggtattggtgaaatatcagacaagtagattaatggaacagaatagagagccttgaaacagacccacacaaatt-aatcacataatctttgccaaaggaacaaaggcaatacaatggagaaaagatagtctttacaataaatggtgctgaaacaagtggacatctacatgc-------------aaagaaatgaaactagacacctactttatccctttcacaaaaatttattcaatatggaAAGTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138980013 346 + 157549271 tacatggaaaggcaaaagaccccaaatagccaacataatactgaagaacaataaaattggaagacgaacagtgcacccaacttcgagactta--tataaa------attaatcaagagagtaggtattggtgaactatcagacaaatagattaatggaacagaatagacagccttgaaacagacccacacaaatt-aatcacgtaatctttgccaaaggaacaaaggcaatacaatggagaaaagatagtctttacaataaatggtgctgaaacaagtggacatctacgtgc-------------aaagaaatgaaactagacacctactttacccctttcacaaaaatttattcaatatggGAATTA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93102541 344 + 110113093 t-catggaaaggcaaaagaccccaaatagccaacataatactgaagaacaataaaattggaagacgaacagtgcacccaacttcgagactta--cataaa------attaatcaagagagtaagtattgctgaaatatcagacaaatagattaatggaacagaatagagagccttgaaacagacccacacaaatt-aatcacgaaatc-ttgccaaaggaacaaacgcaatacaatggagaaaagatagtctttacaataaatggtgctgaaacaagtggacatctacatgc-------------aaagaaatgacagtagacacctactttatccctttcacaaaaatttattcaatatggaAAGTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180994668 346 + 198365852 tacatggaaaggc-aaagaccccaaatagccaacataatactgaagaaaaataaaattagaagatgaacagtgcacccaacttcaaggcttc-ttataaa------attaatcaagagagtaggtattggtgaaatatcagacaaatagattaatagaacagaatacagaggcttgaaacagacctacacaaata-aatcatgtaatctttgcaaaaggaacaaaggcaacacgatggagaaaagatagtctttacgataaatggtgctgaaacaagtggacatctacatgc-------------aaagatatgaaactagacacctactttacccctttcacaaaaatttattcaatatggaAAGCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174740580 346 + 192294377 tacatggaaaggc-aaagaccccaaatagccaacataatactgaagaaaaataaaattagaagatgaacagtgcacccaacttcaaggcttc-ttataaa------attaatcaagagagtaggtattggtgaaatatcagacaaatagattaatagaacagaatacagaggcttgaaacagacctacacaaata-aatcatgtaatctttgcaaaaggaacaaaggcaacacgatggagaaaagatagtctttacgataaatggtgctgaaacaagtggacatctacatgc-------------aaagatatgaaactagacacctactttacccctttcacaaaaatttattcaatatggaAAGCA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163411751 347 + 180432695 tacatggaaaggcaaaagaccccaaatagccaacataatactgaagaaaaataaaattagaagatgAACAGTGCACCCAACTTCAAGGCttc-ttataaa------attaatcaaGAGAGTAGGTATTGGTGAAATATCAGAcaaatagattaatggaacagaatacagaggcTTGAAACAGACCTACACAAATA-AATCATGTAATCTTTGCCAAAGGAACAAAGGCAACACgatggagaaaagatagtctttacgacaaatggtgctgaaacaagTGGACATCTACATGC-------------AAAGATATGAAACTAGACACCTACTTTACCCCTTTCACAAAAATTTATTCAATATGGAAAGCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110440628 347 + 127223203 tacatggaaaggcaaaagaccccaaatagccaacataatactgaagaaaaataaaattagaagatgaacagtgcacccaacttcaaggcttc-ttataaa------attaatcaagagagtaggtattggtgaaatatcagacaaatagattaatggaacagaatacagaggcttgaaacagacctacacaaata-aatcacgtaatctttgccaaaggaacaaaggcaacacaatggagaaaagatagtctttatgataaatggtgctgaaacaagtggacatctacatgc-------------aaagatatgaaactagacacctactttacccctttcacaaaaatttattcaatatggaAAGCA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23789688 330 - 128169293 tacatggaaaggtaaaagacctaaaatagccaacataatattgaagaacaataaaattagaagacaaacagtgcaccca------agactta-cta------------taatcaacagagtacatattggtgaaatatcagacaaatagattaatggaacagaagagagagccttgaaacagatccacagaaatt-aatcaagtaatctttaccaaaggaacaaaggca-----atggagaaaagatagcctttacaataaatggtgctgaaacaagtggacatctacatgg-------------aaaagaatgaaagtagacacctactatacccctttcacagaaatgtattcaatatggatAGTA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52108720 330 -  59632846 tatatggaaaggc-aaaggccccaaagagtcaacacaa-actgaaaaaaagttgaagtg--agac--------tacccaattccaagacttaactataaaaaccacagtaatcaagacagtg---attagacaaa-attagacaaacagatc-----aacagaatacagagcccagaaatagacccatgcaaatacagtcagctgatctttgccaaaggagcaaaggcaatacaatggagaaaggataatcttttcaacaa----------------tggatgtccacaggcaaaaaaaaagaaaaaaaaaatgaatctagacaca-gccttacatctttcacaaaaagtaattcaatatgaatagta
i canFam3.chr16            C 0 I 215
e mm10.chr6                 40428382 141 + 149736546 I

a score=232519.000000
s hg38.chr7_GL383534v2_alt     59234  94 +    119183 Gctagcctaggcaacatagcgagaccctgtctctacaaaaaatt-aaaaaaaaaaa------ttagccaggca---tggtggtgtgtgcctgtcgtgctagcta
s panTro4.chr7             143159231 100 + 161824586 Gctagcctaggtaacatagtgagaccctgtctctacaaaaaaaa-aaaaaaaaaaaaaaaaattagccaggca---tggtggtgtgtgcctgtcgtgctagcta
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138980359  97 + 157549271 Gctagcctaggtaacatagcgagaccctgtctctacaaaaaatt-aaaaaaaaaaa---aaattagccaggca---tggtagtgtgtgcctgtcgtcctaccta
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93102885  95 + 110113093 Gctagcctaggtaacagagcaagaccctgtctctacaaaaaatt-taaaaaaaaaa-----attagccaggca---tggtggtgtgtgcctgtcgtcctagcta
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180995014  92 + 198365852 Gctagcctaggtaacatagcgagatcctgtctctacaaaaaatt-ttttaaaaaat--------agccaggca---tggtggtatgagcctgtagtcctagcta
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174740926  92 + 192294377 Gctagcctaggtaacatagcgagatcctgtctctacaaaaaaat-ttttaaaaaat--------agccaggca---tggtggtatgagcctgtagtcctagcta
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163412098  92 + 180432695 gctagcctaggtaacatagcgagatcctgtctctacaaaaaatt-ttttaaaaaat--------agccaggca---tggtggtatgagcctgtagtcctagcta
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110440975  93 + 127223203 Gctagcctaggtaacatagcaagatcctgtctctacaaaaaattataaaaaaaaat--------agccaggca---cggtagtatgagcctgtagtcctagcta
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23790018  93 - 128169293 Gctagcctaagtaacatagcgagactttgtttctacaaaaaa---taaaaaaaatt--------agccaggcatggtggtggtgtgtgcctgtagtcctagcca
i calJac3.chr8             C 0 I 312
e mm10.chr6                 40428382 141 + 149736546 I
e canFam3.chr16             52109050 215 -  59632846 I

a score=299478.000000
s hg38.chr7_GL383534v2_alt     59328 124 +    119183 cctgggaggctggggtgggaggatcacttgagcccaggagttcaaggctacaaggagctgtgctcactccactgcatcccaacccaggcaaaagagtgagaccctgtctctaaaaTAATAATAA
s panTro4.chr7             143159331 124 + 161824586 cttgggaggctggggtgggaggatcacttgagcccaggagtttaaagctacaaggagctatgctcactccactgcatcccaacccaggcaaaagagtgagaccctgtctctaaaaTAATAATAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138980456 124 + 157549271 tttgggaggctggggtgggaggatcacttgagcccaggagttgaaggctgcaaggagctatgctcactccactgcatcccaacccgggcaaaagagtgagaccctgcctctaaaataataataa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93102980 124 + 110113093 cttgggaggctgggctgggaggatcacttgagcctaggagttcaaggctgcaaggagctatgctcaatccactgtatcccaacccgggcaaaagagtgagaccctgtctctaaaaTAATAATAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180995106 124 + 198365852 cttgggagagtggagtgggaggatcacttgagcccagaagttcaaggctgcaaggagctatgctcactccactgcatcccagcccaggcaacagagtgagaccctgtctctaaaaTAATAATAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174741018 124 + 192294377 cttgggagagtggagtgggaggatcacttgagcccagaagttcaaggctgcaaggagctatgctcactccactgcatcccagcccaggcaacagagtgagaccctgtctctaaaaTAATAATAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163412190 124 + 180432695 cttgggagagtggactgggaggatcacttgagcccagaagttcaaggctgcaaggAGCTATGCTCACTCCACTGCAtcccagcccaggcaacagagtgagaccctgtctctaaaataataataa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110441068 124 + 127223203 cttgggagaatggagtgggaggatcacttgagcccagaagttcaaggctgcaaggagctatgctcactccactgcatcccagtccgggcaacagagtgagaccctgtctctaaaaTAATAATAA
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40428382 141 + 149736546 I
e canFam3.chr16             52109050 215 -  59632846 I
e calJac3.chr8              23790111 312 - 128169293 I

a score=153520.000000
s hg38.chr7_GL383534v2_alt     59452 63 +    119183 TTTTTTAAAATAT-----GTaaa--ccaaaatgtaaaatgca---gaat---tataaaatttctagaagataacac
s panTro4.chr7             143159455 63 + 161824586 TTTTTTAAAACAT-----GTaaa--ccaaaatgtaaaatgca---gaat---tataaaatttctagaagataacac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138980580 63 + 157549271 ttttttaaaatat-----GTaaa--ccaaaatgtaaaatgcg---gaat---tataaaacttctagaagataacac
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93103104 62 + 110113093 TTTTTTAAAATAT-----GTaaa--cc-aaatgtaaaatgca---gaat---tataaaacttctggaagataacac
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180995230 68 + 198365852 TTTTTTAAaatatggatagtaaa--ccaaaatgtaaaatgca---gaat---tataaaacttctagaagatatcac
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174741142 68 + 192294377 TTTTTTAAaatatggatagtaaa--ccaaaatgtaaaatgca---gaat---tataaaacttctagaagatatcac
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163412314 68 + 180432695 tttttaaaaatatggatagtaaa--ccaaaatgtaaaatgca---gaat---tataaaacttctagaagataacac
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110441192 68 + 127223203 TTTTTAAAaatatggatagtaaa--ccaaaatgtaaaatgca---gaat---tataaaacttctagaagataacac
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52109265 76 -  59632846 tttgtaaaaaggtatgtgataaaggcttaaatccaaaatacacacaaatatataaagaacttctaagacacaacat
i canFam3.chr16            I 215 I 112
e mm10.chr6                 40428382 141 + 149736546 I
e calJac3.chr8              23790111 312 - 128169293 I

a score=243178.000000
s hg38.chr7_GL383534v2_alt     59515 99 +    119183 aggagaaaaatctgggtgactttgggtttagcaatgagtttctagatataatactaacagcacaattcatgaaggaaaaatggatatattggacttcat
s panTro4.chr7             143159518 99 + 161824586 aggagaaaaatctgggtgactttgggtttagcaatgagtttctagatataacactaacagcacaattcatgaaggaaaaatggatacattggacttcat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138980643 99 + 157549271 aggagaaaaatctgggtgactttgggtttagcaatgagtttctagatataacactaacagcacaattcatgaaggaaaaatggatacgctggacttcat
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93103166 99 + 110113093 aggagaaaaatctgggtgactttgggtttagcagtgagtttctagatataacactaacagcacatttcatgaaggaaaaatggatacactggacttcat
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180995298 99 + 198365852 atgagaaaaatctgggtgactttgggtttagcaatgagtttccagatataacactaacagcacaattcatgaaggaaaaatggatacactggacttcat
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174741210 99 + 192294377 atgagaaaaatctgggtgactttgggtttagcaatgagtttccagatataacactaacagcacaattcatgaaggaaaaatggatacactggacttcat
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163412382 99 + 180432695 atGAGAAAAATCTGGGTGACTTTGGGTTTAGCAATGAGTTTCCGGATATAACACTAACAGCACAATTCATGAAGGAAAAATGGATacactggacttcat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110441260 99 + 127223203 atgagaaaaatctcggtgactttgggtttagcaatgagtttccagatataacactaacagcgcaattcatgaaggaaaaatggatacagtgcacttcat
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40428382 141 + 149736546 I
e canFam3.chr16             52109341 112 -  59632846 I
e calJac3.chr8              23790111 312 - 128169293 I

a score=244807.000000
s hg38.chr7_GL383534v2_alt     59614  99 +    119183 taaaatttaaaacttctgatctatg------------------------------agagacactattaagggaacgaaaagacaagccacagactgagaga---------agatatttgcaaaacacatatctgataa
s panTro4.chr7             143159617  99 + 161824586 taaaatttaaaacttctgatctctg------------------------------agagacactattaagggaacgaaaagacaagccacacactgagaga---------agatatttgcaaaatacatatctgataa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138980742  99 + 157549271 taaaatttaaaacttctgatctatg------------------------------agagacactattaagggaacgaaaagacaagccacagactgagaga---------agatatttgcaaaacacatatctgataa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93103265  99 + 110113093 taaaatttaaaacttctgatctatg------------------------------agagacactattaagggaatgaaaacacaagccacagactgagaga---------agatatttgcaaagcacatatctgataa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180995397  99 + 198365852 taaaatgtaaaacttctgatccatg------------------------------aaagacactattaagggaatgaaaagacaagccacagactgagaga---------aggcatttgcaaaacacatatctgataa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174741309  99 + 192294377 taaaatgtaaaacttctgatccatg------------------------------aaagacactattaagggaatgaaaagacaagccacagactgagaga---------aggtatttgcaaaacacatatctgataa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163412481  99 + 180432695 taaaatgtaaaacttctgaTCCATG------------------------------AAAGACACTATTAagggaatgaaaagacaagccacagactgagaga---------aggtatttgcaaaacacatatctgataa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110441359  99 + 127223203 taaaatgtaaaacttctgatccatg------------------------------aaagacactattaagggagtgaaaagacaagccacagactgagaga---------aggtatttgcaaaacacatatctgataa
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52109453 138 -  59632846 tagagcatgtgactcctgatctctgggttgtgagttcaaatcccatattgggggtagagattatatttaagaaaaacaaaaaaaatacatgaatacatatatacataTTTATatatatgaaatacatatatataaaaa
i canFam3.chr16            I 112 I 167
e mm10.chr6                 40428382 141 + 149736546 I
e calJac3.chr8              23790111 312 - 128169293 I

a score=123963.000000
s hg38.chr7_GL383534v2_alt     59713 50 +    119183 aggactgttatctaaaatatacaaagaattcataaaactcaacaataaga
s panTro4.chr7             143159716 50 + 161824586 aggactgttatctaaaatatacaaagaattcataaaactcaacaataaga
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138980841 50 + 157549271 aggactgttatctaaaatatacaaagaactcataaaactcaacaataaga
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93103364 50 + 110113093 aggactgttatctaaaatatacaaagaactcataaaactcaacaataaga
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180995496 50 + 198365852 aggactgttatctaaattatacaaagaactcataaaactcaacaataaga
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174741408 50 + 192294377 aggactgttatctaaattatacaaagaactcataaaactcaacaataaga
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163412580 50 + 180432695 aggactgttatctaAATTATACAAAGAACTcgtaaaactcaacaataaga
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110441458 50 + 127223203 aggactgttgtctaaattatacaaagaactcataaaactcaacaataaga
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40428382 141 + 149736546 I
e canFam3.chr16             52109591 167 -  59632846 I
e calJac3.chr8              23790111 312 - 128169293 I

a score=770437.000000
s hg38.chr7_GL383534v2_alt     59763 279 +    119183 aaacaatccaactttttaaaagggtaaaagatctgaacagacaactgatcaaggaagatacacagatggcaaatga-cat--g------atgttgactattttttcatatgctcattacgcaattgcaaattaaaataacaatgagatatcatgacacacatatcagaatggctaacattc---------aaaacaccaaatgctgatgaggatgtgggacagcagga------attcattgctggtgggaatataaaatggcacaaccactttgaaagacagtttggcagttttttacaaaa
s panTro4.chr7             143159766 279 + 161824586 aaacaatccaactttttaaaggggtaaaagatctgaacagacaactgatcaaggaagatacacagatggcaaacga-cat--g------atgttgactattttttcatatgctcattatgcaattgcaaattaaaataacaatgagatatcatgacacacatatcagaatggctaacattc---------aaaacaccaaatgctgatgaggatgtgggacagcagga------attcattgctggtgggaatataaaatggcacaaccactttgaaagacagtttggcagttttttacaaaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138980891 289 + 157549271 aaacaatccaactttttaaaagggtgaaagatctgaacagacacctgatcaaggaagatacacagatggcaaatga-catacg------atgttgaatattttttcatatgcttattac-cagttgcaaattaaaacaacaatgagatatcatgacacacatatcagaatggctaacattcaaaacatcaaaaacaccaaatgctgatgaggatgtgggatagcagga------attcattgctggtgggaatataaaatggcacaaccactttgaaagacagtttggcagttttttacaaaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93103414 290 + 110113093 aaacaatccaactttttaaaagggtaaaagatctgaacagacacctgatcaaggaagatacacagatggcaaatga-catatg------atgttgaatacttttttatatgcacattacgcaattgcaaattaaaataacaatgagatatcatgacacacatatcagaatggctaacattcaaaacaccaaaaacaccaaatgctgatgaggatgtgggacagcagga------attcattgctggtgggaatataaaatggcacaaccattttgaaagacagtttggcagttttttacaaaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180995546 287 + 198365852 aaacaatccaactttttaaaaggataaaagatctgaactgacacctgatcaaggaagatacacaggtggcaaatga-catatg------atgttgaatattttttcatatgctcattaagcaattgcaaattaaaacaacaatgagatagcatgacacacgtatcagaacggctaacattcaaaacaccaaaaccaccaaatgctgatgaggatgtgggacaacagga------attca---ctggtgggaatataaaatggcacaaccactttgaaagacagtttggcagtttcttacaaaa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174741458 290 + 192294377 aaacaatccaactttttaaaaggataaaagatctgaactgacacctgatcaaggaagatacacaggtggcaaatga-catatg------atgttgaatattttttcatatgctcattaagcaattgcaaattaaaacaacaatgagatagcatgacacacatatcagaacggctaacattcaaaacaccaaaaccaccaaatgctgatgaggatgtgggacaatagga------attcactgctggtgggaatataaaatggcacaaccactttgaaagacagtttggcagtttcttacaaaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163412630 290 + 180432695 aaacaatccaactttttaaaaggataaaagatCTGAACTGACACCTGATCAAGGAAGATACACAGGTGGcaaatga-catatg------atgttgaatattttttcatatgctcattaggcaattgcaaattaaaacaacaatgagatagcATGACACACATATCAGAATGGCTAACATTCAAAACACCAAAAccaccaaatgctgatgaggatgtgggaCAATACga------attcattgctggtgggaatataaaatggcacaaccactttgaaagacagtttggcagtttcctacaAAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110441508 290 + 127223203 aaacaatccaactttttaaaaggataaaagatctgaactgacacctgatcaaggaagatacacagatggcaaatga-catatg------atgttgaatattttttcatatgctcattaggcaattgcaaattaaaacaacaatgagatagcatgacacacatatcagaacggctaacattcaaaacaccaaaaccaccaaatgctgatgaggatgtgggacaatagga------attcattgctggtgggaatataaaaaggcacaaccactttgaaagacagtttggcagtttcttacaaaa
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52109758 294 -  59632846 aaataaataaaaattaaaaatggacaaaagattggaacagtcatcacaccaaagaagctatccagatggcaaatgagcatttgaaaaacatgctcaaaa---tgtcatat---catcagggaattccaaatcaaaacaaca---agattctactacacacctatgagaatagtcaaaatccaaaacacggaaaacaccaaatgctaacaaggatgtgtagccatgggaaatctcattcactgctggtgggaatacaaaatggtatcaccactttggaggacagtttggcaggttcttaaaaaa
i canFam3.chr16            I 167 I 211
e mm10.chr6                 40428382 141 + 149736546 I
e calJac3.chr8              23790111 312 - 128169293 I

a score=3151860.000000
s hg38.chr7_GL383534v2_alt     60042 1265 +    119183 ctaacatgttattatcaaatgacccagcaacgatgcacc-tttgta-tttatccaaatgagctgaaaacttacatccacacaaaa-cctgcacacagatgtttgcagcagctttattcacaatggcccaaaactggaaaacaaccatgatgtccttc-ataggtgaatggataaataaaacgtgagatatccatacaaggaaatactctatagcaatacagaaaaatgagctatcaag--ccatgaagagacatggaggaactttaaatgcatgtagctaaataagagaagccagcctgaaaaggctacatactatatgatttcaactatgtgacattctgggaaaggcaaaattatagagacaataaaaagatcaataggaagggagggatgaataggtcaagcata--ggatctttagggcagtgaaacta-ttctgtatgatactgttatggtggatacataacatcgtgcatgtttcaaaacccattgaactgtacaac------agtgaaccttaatgcaaactatggatttaaataaacaataatgtatcaatattagttcatcaattataacaaatataccacactaatgaaagatgttaa---taaagggaaattatatgtgtatgagtgagggggaggtagtatatgggaa--ctctgtactttctgctcaatttttctgtaaaactaaaattgctctaaaaaata-----aaatacattaattattta-aaaaAACCTAATTGATGAATTAACCTAAATTAACTGCCCTAAGAGtggcaatgatactatggtgatgtagaaaaatagccttattcttaggagatttatactgaag-----ta-ttttat---ttta-ttttatta--------------agagacagggttgcccaggctggagtgcagtggcccaatcatagctcactataacctctaactccagggctcaaatgatccgcccatctcaacctcccaaacagctgggactacaggtatgcgccaccatgccgggctaattttttaaatttttatagagatgaggtctcgccatgttgcccaggctggtcttgaactcctgg--cctcaagaaatccttccacctctgtcttccaaagtgttggtattacaggcgttagTATATGTATTCACGCCCAGCCcatactgaaaaatttagaaatgaaatgccatgacatccacaacttactttcaaatagttcagcaaaaaaaagaaaagtctatttatatctccacacacagtcagttctgctataatgcttgttgaatctgttccaaagcaatcaatg
s panTro4.chr7             143160045 1261 + 161824586 ctaacatgttatcatcaaatgacccagcaatgatgcacc-tttgta-tttatccaaatgagctgaaaacttacatccacacaaaa-cctgcacacagatgtttgcagcagctttattcacaatggccccaaactggaaaacaaccacgatgtccttc-ataggtgaatggataaataaaacgtgagatatccatacaaggaaatactctatagcaatacagaaaaatgagctatcaag--ccatgaagagacatggaagaactttaaatgcatgtagctaaataagagaagccagcctgaaaaggctacatactgtatgatttcaactatgtgacattctgggaaaggcaaaattatagagacaataaaaagatcaataggaagggagggatgaataggtcaagcata--ggatctttagggcagtgaaacta-ttctgtatgatactgttatggtggatacataacatcgtgcatttttcaaaacccattgaactgtacaac------agtgaaccttaatgcaaactatggatttaaataaacaataatgtatcaatattagttcatcaattataacaaatataccacactaatgaaagatgttaa---taaagggaaattatatgtgtatgagtgagggggaggtagtatatgggaa--ctctgtactttctgctcaatttttctgtaaaactaaaattgctctaaaaaata-----aaatacattaattattta-aaaaACCCTAATTGATGAATTCACCTAAATTAACTGCCCTAAGAGtggcaatgataccatggtgatgtagaaaaatagccttattcttaggagatttatactgaag-----ta-ttttat---ttta-ttttatta--------------agagacagggttgcccaggctggagtgcagtggcccaatcatagctcactataacctctaactccagggctcaaatgatccgcccatctcaacctcccaaacagctgggactacaggcatgcgccatcatgccgggctaatttttaaaatttttatagagatgaggtctcgccgtgttgcccaggctggtcttgaactcttgg--cctcaagaaatccttccacctctgtcttccaaagtgttggtattacaggcgttagTATACATATTCATGCCCAGCCcatactgaaaaatttagaaatgaaatgccatgacatccacaacttactttcaaatagttcagcaaaaaaaagaaaagtctat----atctccacacacagtcagttctgctataatgcttgttgaatctgttccaaagcaatcgatg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138981180 1267 + 157549271 ctaacatattattatcatatgacccagcaacgatgcacc-tttgta-tttatccaaatgagctgaaaacttacatccacacaaaa-cctgcatgcagatgtttgcagaagctttattcacaatggcccaaaactggaaaacaaccacgatgtccttc-ataggtgaatggataaacaaaacgtgagatatccatacaatgaaatactctttagccatacagaaaaatgagctatcaagccccatgaagagacatgaaggaactttaaatgcatgtcgctaaataagagaagccagcctgaaagggatacatactgtatgatttcaactatgtgacattctgggaaaggcaaaattatagaaacaataaaaagatcaataggaagggagggatgaataggtcaagcata--ggatctttagggcagtgaaacta-ttctgtatgatactgttatggtggatacataacatcgtgcatttttcaaaacccactgaactgtacaac------agtgaaccttaatgcaaactatggatttaaataaacaataatgtatcaatattagttcatcgattataacaaatataccacactaatgaaagatgttaa---taaagggaaattatatgtgtatgagtgagggggaggtagtatatgggaa--ctctgtactttctgctcaatttttctgtaaaactaaaattgctctaaaaaaca-----aaatat----attattta-aaaaACCCTAATTGATGAATTAACCTAAATTAACTGCCCTAAGAGTGGCAATGATACTATGGTAATGTAGAAAAACAGCCTTCTTCTTAGGCGATTTATACTGAAGtatttta-ttttat---ttta-ttttattA--------------AGAGACAGGgttacccaggctggagtacagtggcccaatcatagctcactataacctctaactccagggctcaaatgatcctcccatctcaacctcccaaacaggtgggactgccggcatgtgccaccacacctggctaattttttaaatttttgtagaggtgaggtctcgccatgttgcccaggctggtcttgaactcctgg--cctcaagaaatccttccgcctctgtcttccaaagtgttgatattacaggcgtTGGTATACATATTCACGCCCAGCCcatactgaataatttagaaatgaaatgccattacatccacaacttactttcaaatagttcagc-aaaaaaagaaaagtctatttatatctctacacacagtcagttctgctataatgcttgtcgaatctgttccaaagcaatccacg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93103704 1259 + 110113093 ctaacatattattatcatatgacccagc-acgatgcaccttttgtattttatccaaatgagctgaaaactgacatccacacaaaa-cctgcacacagatgtttgcagcagctttattcacaatggccccaaactagaaaaccaccacgatgtccttc-ataggtgaatggataaagaaaacgtgagacatccatacactgaaatactctttagcgatacagagaaatgagctatcaag--ccatgaagagacatggaggaactttaaatgcatgtcgctaaataagaaaagccagcctgaaagggctacatactgtatgatttcaactatgtgacattctgggaaaggcaaaattatacagacaataaaaagatcaataggaagggagagatgaataggtcaagcata--ggatctttagggcagtgaagcta-ttctgtatgatactgttatggtggatacacaacatcgtgcatttttcaaaacccattgaactgtacaac------agtgaatcttaatgcaaactatggatttaaataaacaataatgtatcgatattagttcatcaattataacaaatatacaacactaatgaaagatgttaa---taaagggaaattatatgtgtatgagtgagggggaggtagtatatgggaa--ctctgtactttctgctcaattttcctgtaaaactaaaatggctctaaaaaata-----aaatat----attattta-aaaaACCCTAATTGATGAATTAACCTAAAttaactgtcctaagagtggcaatgatactatggtgatgtagaaaaacagccttattctta---gatttatactgaag-----tatttttat---ttta-ttttatta--------------agagacagggttgcccaggctggagtgcagtggcccaatcatagctcactataacctctcactccagggctcaaacgatcctcccatctcaacctcccaaacagctgggactaccggcatgcgccaccacacctggctaattttttaaatttttgtagggctgaggtctcgccatgttgcccaggctagtcttgaactcctgg--cctcaagaaatccttccacctcggtcttccaaagtgttgacattacaggcgtTGGTATACATATTCACGCCCAGCCcatactgaagaatttagaaatgaaatgccatgacatccacaacttactttcaaatagttcagc-aaaaaaagaaaagtctatttatatctctatacacagtcagttctgctataatgcttgttgaatctgttccaaagcaatcgatg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180995833 1252 + 198365852 ctaaca---tatcatcatatgacccagcaaccatgcacc-tttgta-tttatccaaatgagctgaaaacttacattcacacaaaa-cctgcacaaagatgtttagagcagctttattcacaatggcccaaaactggaaaaccaccacgatgtccttc-ataggtgaatggataaacaaaacgtgagacgtccacacaatgaaatactcttcagcaatacagaaaaatgagctctcaag--ccatgaagagacatggaggaactttaaatgcacgtcgctaagtaagagaagccagtctgaaaaggctacatactgtctgatttcaactatgtcacattctgggagaggcaaaattatagagacaaaaaaaagatcaacaggaagggagggatgaataggtcgagcaca---gatctttagggcagtgaaacta-ttctgtatgatactgttagggtggatatataacatcgtgcatttttcaaaacccattgaactgtacaac------agtgaaccttaatgcaaattatggatctaaata---aataaggtatcaatattagttcatcaattataacaaatacaccacactaatgaaagatgttaa---taaagggaaattatttgtgtaacagtgagggggagatagtatatgggaa--ctctgtactttctgctcaatttttctgtcaaattaaagttgctct-aaaaata-----aaatatattagttATGGG-AAAAACCCTAATTGATGAATTAACCTAAATTAACTACTCTAAGAGtggcaatgatactatggtgatgtagaaaaacagccttattcttaggagatttatactgaag-----ta-ttGTAt---tttatttttttta--------------agagacagggttgcccaggctggagtgcagtggcccaatcatagctcactataacctctaactccagggctcaaatgatcctcccatttcaacctcccaaacagctggg-ctacaggcatgcgccaccacacctggctaattttttcattttttgtggaggcaaagtctcgctatgttgcccagggtggtcttgaactcctgg--cctcaagaaatccttctgtctcggtcttccaaagtgtt---attacaggcatTGGTATACATATTCACGCCCAGCCcatactgaagaatttagaaatg-aatgccatgacatccacaacttactttcaaatagtttagc-aaaaaaataaaagtctatttatatctctacagacaatcagttctgctataatgcttgttgaatctgttccaaagcaactgatg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174741748 1252 + 192294377 ctaaca---tatcatcatatgacccagcaaccatgcacc-tttgta-tttatccaaatgagctgaaaacttacattcacacaaaa-cctgcacaaagatgtttagagcagctttattcacaatggcccaaaactggaaaaccaccacgatgtccttc-ataggtgaatggataaacaaaacgtgagacgtccacacaatgaaatactcttcagcaatacagaaaaatgagctctcaag--ccatgaagagacatggaggaactttaaatgcacgtcgctaagtaagagaagccagtctgaaaaggctacatactgtctgatttcaactgtgtcacattctgggagaggcaaaattatagagacaataaaaagatcaacaggaagggagggatgaataggtcgagcaca---gatctttagggcagtgaaacta-ttctgtatgatactgttagggtggatatataacatcgtgcatttttcaaaacccattgaactgtacaac------agtgaaccttaatgcaaattatggatctaaata---aataaggtatcaatattagttcatcaattataacaaatacaccacactaatgaaagatgttaa---taaagggaaattatttgtgtaacagtgagggggagatagtatatgggaa--ctctgtactttctgctcaatttttctgtcaaattaaagttgctct-aaaaata-----aaatatattagttATGGG-AAAAACCCTAATTGATGAATTAACCTAAATTAACTACTCTAAGAGtggcaatgatactatggtgatgtagaaaaacagccttattcttaggagatttatactgaag-----ta-ttgtat---tttatttttttta--------------agagacagggttgcccaggctggagtgcagtggcccaatcatagctcactataacctctaactccagggctcaaatgatcctcccatttcaacctcccaaacagctggg-ctacaggcatgcgccaccacacctggctaattttttcattttttgtggaggcaaagtctcgctatgttgcccagggtggtcttgaactcctgg--cctcaagaaatccttctgtctcggtcttccaaagtgtt---attacaggcatTGGTATACATATTCACGCCCAGCCcatactgaagaatttagaaatg-aatgccatgacatccacaacttactttcaaatagtttagc-aaaaaaataaaagtctatttatatctctacagacaatcagttctgctataatgcttgttgaatctgttccaaagcaactgatg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163412920 1253 + 180432695 CTAACA---tattatcatatgacccagcaaccaTGCACC-TTTGTA-TTTATCCAAATGAGCtgaaaacttacattcacacaaaa-cctgcacaaagatgtttacagcagctttattcacaatggCCCAAAACTGGAAAACAACCACGATGTCCTtc-acaggtgaatggataaacaaaatgtgagacatccacacaatgaaatactctttagcaatacagaaaaatgagctatcaag--ccatgaagaGACATGGAGGAACTTTAAATGCACGTCGCTAAGTAagagaagccagtctgaaaaggctacatactgtctGATTTCAACTATGTCACGTTCTGGGAGAGGCAAAATtatagagacaataaaaagatcaacaggaagggagggatgaataggtcgAGCACA---GATCTTTAGGGcggtgaaacta-ttctgtatgatactgttaTGGTGGATATATAACATCGTGCATTTTTCAAAACCCATTGAACTGTACAAC------AGTGAACCTTAATGCAAATTATGGATCTAAATA---AATAAGGTATCAATATTAgttcatcaattataacaaataCACCACACTAATGAAAGACGTTAA---TAAAGGGAAATTATTTGTGTAACAGTGAGGAGGAGAtagtatatgggaa--ctctgtactttctgctcaatttttctgtcaaATTAAAgttgctct-aaaaata-----aaatatattagttatGGG-AAAAACCCTAATTGATGAATTAACCTAAATTAACTACTCTAAGAGTGGCAATGATACTATGGTGATGTAGAAAAACAGCCTTATTCTTAGGAGATTTATACTGaag-----ta-ttgtat---tttatttttttta--------------agagatagggttgcccaggctggagtgcagtggcccaatcatagctcactataaactctaactccagggctcaaatgatcctcccatttcaacctcccaaacagctgggactacaggcatgcgccaccacacctggctaattttttcattttttgtggaggcgaagtctcaccatgttgcccagggtggtcttgaactcctgg--cctcaagaaatccttccgtctcggtcttccaaagtgtt---aTTACAGGCATTAGTATACATATTCACGCCCAGCCCATACTGAAGAATTTAGAAATG-AATGCCATGACATCCACAACTTACTTTCAAATAgtttagc-caaaaaaaaaaagtctatttataTCTCTACAGACAATCAGTTCTGCTATAATGCTTGTTGAATCTGTTCCAAAGCAACTGATG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110441798 1235 + 127223203 ctaaca---tattatcatatgacccagcaaccatgcacc-tttgta-tttatccaaatgagctgaaaacttacattcacacaaaa-cctgcacaaagatgttcacagcagctttattcacaatggcccaaaactggaaaaccaccacaatgtccttc-acaggtgaagggataaacaaaacgtgagacatccacacaatgaaatactctttagcaatacagaaaaatgagctctcaag--ccatgaagagacatggaggaactttaaatgcacgtcgctaagtaagcgaagccagtctgaaaaggctacatactgtttgatttcaactatgtcacattctgggagaggcaaaattacagagacaataaaaagatcaacaggaagggagggacgaataggtcgagcaca---gatctttagggcagtgaaacta-ttctgtatgatactgttatggtggatatgtaacac--tgcatttttcaaaacccattgaactgtacaac------agtgaaccttaatgtaaactatggatctaaataaacaataacgtatcaatattagttcatcaattataacaaatacaccacactaatgaaagatgttaa---taaagggaaattatttgtgtaacagtgagggggagatagtatatgggaa--ctctgtaatttctgctcaatttttctgtaaaattaaagttgctct-aaaaata-----aaatatattagttATGGG-AAAAACCCTAATTGATGAATTAACCTAAATTAACTACTCTAAGAGTGGCAATGATACTACAGTGATGTAGAAAAACAGCCTTATTCTTAGGAGATTTATACTGAGG-----TA-TTGTAt---tttatttttttta--------------agagacagggttgcccaggctggagtgcagtggcccaatcatagctcactataccctctaactccagggctcaaatgatcctcccatttcaacctcccaaacagctgggactacaggcatgcgccaccacacctggctaattttttcattttttgtggaggcgaagtctcgccatgttgcccagggtggtcttgaactcctgg--cctcaagaaatccttccgtctcggtcttccaaagtgtt---attacaggcatTGGGATACATATTCACGCCCAGCCTatactgaagaatttagaaatg-aatgccatgacatctacaacttactttcaaatagtttagc-aaaaaaataaaagt-------------------caatcagttctgctataatgcttgttgaatctgttccaaagcaattgatg
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52110263 1130 -  59632846 taaacatattcttaccacacaatcaggcactcctgctcc-ttcata-tttatcc-aatgagc-gaaagctcacgtccacacaaaagcctgcacatgaatgtttatagcagctttatttgtaattgtcccaaactgg-aagcaaccaaggtatccttcaacaggtaaatggaaaaacagactgtgcaacatccagacaataaaatcctactcag----------aaatgagctatcaag--ccac--aaaaacatgaaggaaacttaaacacatactgctaagtgaaagaaacccgtctgaaaaggctacattctgtgtaattccagttctgtgacactctggaaaa---caaatt----agatagcaaatagatcagtggctaaggacggatgaacaagtagagcaccgtgaattttcggggcagtaaaactgtttctgtaggataccattactgtggacacataacactgtgcatttttc-aaacccacagaa-ggtacaacacagagagtaaaccctgatgcagaccatgggcttca------gccaatttatcagtatcggttcatcagttgtaacaaataagccacgtgaatgctagatgttaatactacagggaaactg-------------ggtgggaaggtggtagatgggaacgctctgggctttctgctcagtttttctgtaaacctgaaaccggtctaaaaaaaaaagctaaatttattaaTTAAGAATAAATAAACCAATGGATGAATTGACCTTGgttagttaccctaggattgataatgatatggtggttatgtaggaaaatggccttattctta---aattt--------------ta-ttttatttatttattttttttatgatagacatagagagagagagag------agagggagaggcagagacacaggcagag------------------------------------------------------ggacaagcagg-ctccatgcagggagccccatgtggggcgggactc----gatcccagggctccaggatcacgccctggaccaaaggcaggcgccaaaccgctgagccaccgagggatccccttattcttagatttaaaa------------------------------------------------tgaggtattcagaaatgtaatgatatgatgtctggaacttattgtccaatagttcggc-agaaaaagagCCGC--------ACACCAGTCGATagtcagttcggctagaatgtgggctgattttgttccaaagcatttgata
i canFam3.chr16            I 211 I 19
e mm10.chr6                 40428382  141 + 149736546 I
e calJac3.chr8              23790111  312 - 128169293 I

a score=328629.000000
s hg38.chr7_GL383534v2_alt     61307 122 +    119183 tattagggaatttgacatttgcttatgtgtgatttcaatcatgaaaaacacaaagtcaatgtggaaaactacaccc-agctgaatcaagccatgtcggaatatacaaaacaca---cccaccttaa
s panTro4.chr7             143161306 122 + 161824586 tattagggaatttgacatttgcttattcgtgatttcaatcatgaacaacacaaagtcaatgtggaaaactacaccc-agctgaatcaagccatgtcggaatatacaaaacaca---cccaccttaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138982447 122 + 157549271 tattagggaatctgacatttgcttatgcatgatttcaatcataaaaaacacaaagtcaatgtggaaaactacaccc-agctgaatcaagccatgtcggaatatacaaaacaca---cccaccttaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93104963 122 + 110113093 tattagggaatttgacatttgcttatgcacgatttcaatcacgaaaaacacaaagtcaatgtggaaaactacaccc-agctgaatcaagccatgtcggaatatacaaaacata---cccaccttaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180997085 122 + 198365852 tattagggaatttgacgtttgtttatgcatgatttcaatcatgaaaaacacaaagtgaatgtggaaaactacaccc-agctgaatcaagccgtgtgggaatctacaaaacaca---tccaccttaa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174743000 122 + 192294377 tattagggaatttgacgtttgtttatgcatgatttcaatcatgaaaaacacaaagtgaatgtggaaaactacaccc-agctgaatcaagccgtgtgggaatctacaaaacaca---tccaccttaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163414173 122 + 180432695 TATTAGGGAATTTGACGTTTGTTTATGCGTGATTTCAATCATGAAAAACACAAAGTGAATGTGGAAAACTACACCC-AGCTGAATCAAGCCATGTCGGAATCTACAAAACACA---TCCACCTTAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110443033 122 + 127223203 tattagggaatttgacatttgtttatgcgtgatttcaatcatgaaaaacacgaagtgaatgtagaaaactacaccc-agctgaatcaagccatgtcggaatctacaaaacaca---tccaccttaa
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40428523  99 + 149736546 TAGCAGAGAATTTCACAT------------GATTTCGACCATGAGAAATGC-CAGACAATGCAGAACCTTCCA--------AACTCAAGCCATGAAGAAATGTACAGTGTTCA---T---TCTTCA
i mm10.chr6                I 141 C 0
s canFam3.chr16             52111412 126 -  59632846 tcgtaggggatttcctgtttgctgatagacaattttggtcacaagggtagcaacttgaatgctgaaaactgcacccgagcaggaatgagccacacagaaatgcacagaatgcagtccccgctataa
i canFam3.chr16            I 19 I 132
e calJac3.chr8              23790111 312 - 128169293 I

a score=835919.000000
s hg38.chr7_GL383534v2_alt     61429 385 +    119183 gcttct-cctgctacctcaggtcac---------ctcgttctg--------------------------------------ggccatgccatgcacct-ctagcgtcacagttttgcctctgatttcagacagcccccctcccaccacacatagtaattcacaggctcaatcctttcagcactcacctccagatacaaac-accaggtcttt-taaaggtacagttccacatttactaag----tatgtatttcttaaccatttatcatatgcaaaactgtcctatagtt--tttggtaggttcct----------------atcttt-----tttttaaaaaaaatgtgccactgaca------------------------aagtttttctcataagccct--------gtga-tttttacttcatgatttttttttgccgcacag----tgatttttggaacatat-atttcatgttataggggatatgactatgtaa
s panTro4.chr7             143161428 383 + 161824586 gcttct-cctgctacctcaggtcac---------ctcgttctg--------------------------------------ggccatgccatgcacct-ctagcgtcacagttttgcctctgagttcagacagcccccctcccaccacacatagtaattcacaggctcaatcctttcagcactcacctccagatacaaac-accaggtcttt-taaaggtacagttccacatttactaag----tatgtatttcttaaccatttatcatatgcaaaactgtcctgtagtt--tttggtaggttcct----------------atcttt-----ttta-aaaaaaaatgtgccactaaca------------------------aagtttttctcataagccct--------gtga-tttttacttcatgatttttttt-gccgcacag----tgatttttggaacatat-atttcatgttacaggggaagtgactatgtaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138982569 380 + 157549271 gcttctacctgctacctcaggtcac---------ctcgttctg--------------------------------------ggccatgccatgcacct-ctagcatcacagttttgcctctgatttcagacagcccccctcccatcacacatagtaattcacaggctcaatcctttcagcactcacctccagatacaaac-accaggtcttt-taaaggtacagttccacatttactgag----tatgtatttcttaaccatttatcatatgcaaaactgtcctgtagtt--tttggtaggttcct----------------atcttt-----ta---aaaaaaaatgtgccactgaca------------------------aagtttttctcataagccct--------gtga-tttttacttcatgattttttt--gtcgcacag----tgatttttggaacacat-atttcatgttaca-gggaagtgactatgtaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93105085 386 + 110113093 gcttctacctgctacctcaggtcac---------ctcgttctg--------------------------------------ggccatgccacgcacct-ctagtgtcacagttttgcctctgatttcagacagcccccgtcccaccacacatagtaattcacggactcaatcctttcagcactcacttccagatacaaac-accaggtcttt-taaaggtacagttccatatttactgag----tatgtatttcttaaccatttatcatatgcaaaactgtcctatagtt--tttggtaggttcct----------------atcttt-----aaaaaaaaaaaaaagtgccattgaca------------------------aagtttttctcataaggcct--------gtga-tttttacttcat--ttttttt--gccacacagtgattgatttttggaacacac-atttcatgttataggggaagtgactatgtaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180997207 373 + 198365852 gcatcaacccgctacctcaggtcac---------ctcgtactg--------------------------------------agccatgccatgcacct-ccagcgtcacagttttgcctctgatttcagacaaccctcctcccagcacacatagtaattcacaggctcaatcctttcagcactcacctccagatacaaac-accaggtcttt-taaaggtacagttccatgtttactgagtatttatgtatttcttaaccatttatcatatgcaaaactgtcctatagtt--tttggtagggttct----------------atcttt-aaaaaagaaaaaaaaaatgtgccactgaca------------------------aagtttttctcagaagccct--------atga-tttttagttca-------------------------tgatttttggaacacat-atttcatgttatacggggagtgactatataa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174743122 373 + 192294377 gcatcaacccgctacctcaggtcac---------ctcgtactg--------------------------------------agccatgccatgcacct-ccagcgtcacagttttgcctctgatttcagacaaccctcctcccaccacacatagtaattcacaggctcaatcctttcagcactcacctccagatacaaac-accaggtcttt-taaaggtacagttccatgtttactgagtatttatgtatttcttaaccatttatcatatgcaaaactgtcctatagtt--tttggtagggttct----------------atcttt-aaaaaagaaaaaaaaaatgtgccactgaca------------------------aagtttttctcagaagccct--------atga-tttttagttca-------------------------tgatttttggaacacat-atttcatgttatacggggagtgactatataa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163414295 357 + 180432695 GCATCGACCCGCTACCTCAGGTCAC---------CTCGTTCTG--------------------------------------AGCCATGCCATGCACCT-CCAGCGTCACAGTTTTGCCTCTGATTTCAGACAACCCTCCTCCCACCACACATAGTAATTCACAGGCTCAATCCTTTCAGCACCCACCTCCAGATACAAAC-ACCAGTATTTA-T-----------------TATACtgagtatttatgtattttttaaccaTTTATCATATGCAAAACCGTCCTATAGTT--TTTGGTAGggttct----------------atctttaaaaaaaaaaaaaaaaaatgtgccactGACA------------------------AAGTTTTTCTCAGAAGCCCT--------ATGA-TTTTTAGTTCA-------------------------TGATTTTTGGAACACAT-ATTTCATGTTATATGGGGAGTGACTATATAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110443155 369 + 127223203 gcattgacccgctacttcaggtcac---------ctcgttctg--------------------------------------agccatgccatgcacct-ctagcgtcacagttttgcctctgatttcagacaaccctcctcccaccacacatagtaattcacaggctcaatcctttcagcactcacctccagatacaaac-accaggtcttt-taaaggtacagttccatgtttactgagtatttatgtatttcttaaccatttatcatatgcaaaactgtcctatagtt--tttggtagggttct----------------atcttt-----aaaaaaaaaaaaatgtgccactgaca------------------------aagtttttctcagaagccct--------atga-tttttagttca-------------------------tgatttttggaacacat-atttcatgttatacggggagtgactatataa
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40428622 383 + 149736546 GCGTCTGCCTGTTGTGTGGAGCTGC---------CGC------------------------------------------------------TGCCCCTGctggtattacaacttcccctcagatctcatgtagctcttggcctagttcac-tag-aacccaccagatcagacc-accaccatttacctccttaggcaacctgctagg---------aggagtatatcc----ttacttagcatttctgtatttcttacccacctcacagcctgacgactgtcctactgtt--cctgctggcttcctccctcctccttcccccctctct---------------cactgtgttgctgaca-tttttgaggggt-----------gtgtcctcctctcactcttttcatgaaattaa-tttacactgcatgatatttcctagcag---------aagtttctggaacatgtcacttcatattacagaggaattgactgTATga
i mm10.chr6                C 0 C 0
s canFam3.chr16             52111670 435 -  59632846 gcttct-ccctttgcct-gtgtctctgcctctctctcgctctgtgtctctcatgaataaataaataaaatctttaaaagaaaGCTGTGCCTGTcactt-ctagggccaccactgtccatccaatgtcacatagccctccttccacttcac--cataaatcacaagctccacacttctgacatccaccttcctatgcaaa--gtcagctctttcttaaggtgaaatgccacactt--tgagtatttatgtctctcttaattcattaccgtatgtataatcatcctaccattcgtatattcggttccc----------------atcttt-----gcttaaacaa------gtcactgacagtttctgagtgctatgccctgaccccatcttctccatacacctt--------gtgactttttactcca----agtctttcacagcccag----tgatttttagg-------aatgcaGGTTA---AGGatacggctaa----
i canFam3.chr16            I 132 C 0
e calJac3.chr8              23790111 312 - 128169293 I

a score=896196.000000
s hg38.chr7_GL383534v2_alt     61814 256 +    119183 gaataaagcaaatggggcaaaatgt-caataaacggggactctaagtgaaagaca-tacaggttttcactgcactattctttcaacttttc----------aa----------aacatttcaac-------ttacaaattggggaaaataaTTGAAATAATAGCAATGTGAAAAA-------------------------------------------------------AAGGAGAGCATAAAGGACTTTGCAAAAGCCAAAAATAATTGAGGCAATGCACCACAC-TAATAGGGAATGAAGCGCTATCA-GGGCTTGAAGTTATCCT---ACAGAAACATTAC
s panTro4.chr7             143161811 258 + 161824586 gaataaagcaaatggggcaaaatgt-caataaatggggaatctaagtgaaagacaatacaggttttcactgcactattctttcaacttttc----------aa----------aacatttcaac-------ttacaaattggggaaaataaTTGAAATAATAGCAATATGAAAAA-------------------------------------------------------AAGGAGAGCATAAAGGACTTTGCAAAAGCCAAAAATAATTGAGGCAATGTAGCACAGATAATAGGGAATGAAGCGCTATCA-GGGCTTGAAGCTATCCT---ACAGAAACATTAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138982949 261 + 157549271 gaataaagcaaatggggcaaaatgt-caataaactgggactctaagtgaaagaca-tacaggttttcactgtactattctttcaacttttc----------aa----------aacatttcaac-------ttacaaattggggaaaataaTTGAAATAATAGCAATGTCAAAAA---------------------------------------------------ACCTAAGGAGAGCATAAAGGCCTTTGCAAAAGCCAAAAATAATTGAGGCAATGTACCACAGATAATAGGGAATGAAGCGCTATCA-GGGCTTGAGGCTATCCT---ACAGAAACATTAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93105471 261 + 110113093 gaacaaagcaaatggggcaaaatgt-caataaacggggactctaagtgaaagaca-tacaggttttcactgtactattctttcaacttttc----------aa----------aacatttcagc-------ttacaaactggggaaaataaTTGAAATAATAGCAATGTGAAAAA---------------------------------------------------ACCTAAGGAGAGCATAAAGGCCTTTGCAAAAGCCAAAAATAATTGAGGCAATATACCACAGATAATAGGGAATGAAGCGCTATCA-GGGCTTGAGGCTATCCT---ACAGAAACATTAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180997580 261 + 198365852 gaataaagcaaatggggcaaaatgt-caataaacggggactctaagtgaaagaca-tacaggttttcactgtactattctttcaacttctc----------aa----------aacatttcaac-------ttacaaactggggaaaataaCTGAAATAATAGCAACGTGTAAAA---------------------------------------------------ACATAAGGAGAGCATAAAGGACTTTGCAAAAGCCAAAAATAATTGAGGCAATGTACCACAGATAATAGGGAATGAAGAGCTATCA-GGGCTTGAGGCTATCCT---ACAGAAACATTAC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174743495 261 + 192294377 gaataaagcaaatggggcaaaatgt-caataaacggggactctaagtgaaagaca-tacaggttttcactgtactattctttcaacttctc----------aa----------aacatttcaac-------ttacaaactggggaaaataaCTGAAATAATAGCAACGTGTAAAA---------------------------------------------------ACATAAGGAGAGCATAAAGGACTTTGCAAAAGCCAAAAATAATTGAGGCAATGTACCACAGATAATAGGGAATGAAGAGCTATCA-GGGCTTGAGGCTATCCT---ACAGAAACATTAC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163414652 261 + 180432695 GAGTAGAGCAAATGGGGCAAAATGT-CAGTAAACGGGGACTCTAAGTGAAAGACA-TACAGGTTTTCACTGTACTATTCTTTCAAATTCTC----------AA----------AACATTTCAAC-------TTACAAACTGgggaaaataactgaaataatagCAACATGTAAAA---------------------------------------------------ACATAAGGAGAGCATAAAGGACTTTgcaaaagccaaaaataattgAGGCAATGTACCACAGATAATAGGGAATGAAGAGCTATCA-GGGCTTGAGGCTATCCT---ACAGAAACATTAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110443524 261 + 127223203 gaatagagcaaatggggcaaaatgt-gaataaacggcgactctaagtgaaagaca-tacaggttttcactgtactattctttcaaattctc----------aa----------aacatttcaac-------ttacaaactggggaaaataaTTGAAATAATAGCAACGTGTAAAA---------------------------------------------------ACACAAGGAGAGCATAAAGGACTTTGCGAAAGCCAAAAATAATTGAGGCAATGTACCACAGATAATAGGGAATGAAGAGCTATCA-GGGCTTGAGGCTATCCT---ACAGAAACATTAC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23790423 249 - 128169293 GAataaagtaaatggggcaaaatgt-cagtaaatggggtctctaagtgaaagata-gacaggttttcactgtactattat---aacttttc-----------------------ACATTTCAAC-------ATGAGAACTGGGTAAAGTAACTGAAATAATAGCAATGTGAAAAC---------------------------------------------------ACATAAGGCAAGCATAAGAAACTTTGCAAATGCCAAAAATAACTGAGGCAATGTACCGCAGATAATAGGGAATGAAGAGCTATCA-GGGCTTGAGGCTATCCT---------ACATTAC
i calJac3.chr8             I 312 C 0
s mm10.chr6                 40429005 330 + 149736546 gaatgaagccaatatgacaaaatgt-caacagatggggactctacaggaaggata-aacaagttctccctctgcgattctttc-atttctC----------GACCCCTTCCCCAAGGTTTAACCAATCTCATTACAAATCAGGGAAA-CAAATGAAATGCTTGAGatttgcatatatacctatatatgtgtattgtatagatagatgtgtatgtatatattaacatatatgAGGGAAGCATAAAGGACTTTATAAAAACCTCCAGTAATTGAGAAAAGAAACCACACCTGAGGTGGGACAGGGGAATATTA-TGATTTGAGGTAATCTTTTTATAAAAGTATTCT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52112105 262 -  59632846 agataaagcaaatatggcaaaatgtccaagaaatgggggc----------agac--tctaagtttgcactatactattcctctaacttttctgaggtcttaaa----------aaaatgtcaac-------atacaaaTTGGGGAACATAATGTAAATAAAGGCGATGTGGAAAA---------------------------------------------------ACATAAGGTAAGCAGAAAGGACTCTGCAAAAGCAAAATGTAATTGAGGCAGTGTGCAATAAATA--GGGTAATAAAGAGGCATCGTTGGCTAAAGGTCATGCT-TAACAGAAATATTAC
i canFam3.chr16            C 0 I 190

a score=916091.000000
s hg38.chr7_GL383534v2_alt     62070 262 +    119183 AAATGAA----------AACCAGCTTACATATGGAATTTGAGGAGACTTAATGGAAAGTGATTTTGCATAATTAGTAATCCTTATGGGATGCCATTTAATACCAGAAAGAAA--------CTCATCCTG----ACTGCTACTTATCCCAGGCTCAGTCTTCACATTCCATGCTTTTAGGTTTTCCAGATATCCTCACTGTAT--TAAGAACTCAGCCAGGGAGCTGGGGCCTGGA-AG--ATTCAACAAAAGAGGTCATCTCATGGCTAGTCCATCAAAGAGAGGAGGT
s panTro4.chr7             143162069 262 + 161824586 AAATGAA----------AACCAGCTTACATATGGAATTTGAGGAGGCTTAATGGAAAGTGATTTTGCATAATTAGTAATCCTTATGGGATGCCATTTAATACCAGAAAGAAA--------CTCATCCTG----ACTGCTACTTATCCCAGGCTCAGTCTTCACATTCCATGCTTTTAGGTTTTCCAGATATCCTCACTGTAT--TAAGAACTCAGCCAGGGAGCTGGGGCCTGGA-AG--ATTCAACAAAAGAGGTCATCTCATGGCTAGTCCATCAAAGAGAGGAGGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138983210 262 + 157549271 AAATGAA----------AACCAGCTTACATATGGAATTTGAGGAGGCTTAATGGAAAGTGATTTTGCATAATTAGTAATCCTTATGGGATGCCATTTAATATCAGAAAGAAA--------CTCATCCTG----ACTGCTACTTATCCCAGGCTCAGTCTTCACATTCCATGCTTTTAGGTTTTCCAGATATCCTCACTGTAT--TAAGAACTCAGCCAGGGAGCTGGGGCCTGGA-AA--ATTCAACAGAAGAGGTCATCTCACGGCTAGTTCATCAAAGAGAGGAATT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93105732 262 + 110113093 AAATGAA----------AACCAGCTTACATATGGAATTTGAGGAGGCTTAATGGAAAATGATTTTGCATAATTAGTAATCCTTATGGGATGCCATTTAATACCAGAAAGAAA--------CTCATCCTG----ACTGCTACTTATCCCAGGCTCAGTCTTCACATTCCATGCTTTTAGGTTTGCCAAATATCCTCACTGCAT--TAAGAACTCAGCCAGGGAGCTGGGGCCTGGA-AG--ATTCAACAAAAGAGGTCATCTCATGGCAAGTCCATCAAAGAGAGGAATT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180997841 262 + 198365852 AAATGAA----------AACCAGCTTACATATGGAATTTGAGGAGGCTTAATGTAAAGTGATTTTGCATAATTAGTCATCCTTATGGGATGCCATTTAATACCAGAAAGAAA--------CTCATCCTG----ACTGCTACTTATGCCAGGCTCAGTCTTCACATTTCATGCTTTTAGGTTTTCCAAATATCCTCACTGTAT--TAAGAACTCAGCCAGGGAGCTGGGGCCTGGA-AG--GTTCAACAAAAGAGGTCATCTCATGGCTAGTCCATCAAAGAGAGGAGTC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174743756 262 + 192294377 AAATGAA----------AACCAGCTTACATATGGAATTTGAGGAGGCTTAATGTAAAGTGATTTTGCATAATTAGTCATCCTTATGGGATGCCATTTAATACCAGAAAGAAA--------CTCATCCTG----ACTGCTACTTATGCCAGGCTCAGTCTTCACATTTCATGCTTTTAGGTTTTCCAAATATCCTCACTGTAT--TAAGAACTCAGCCAGGGAGCTGGGGCCTGGA-AG--GTTCAACAAAAGAGGTCATCTCATGGCTAGTCCATCAAAGAGAGGAGTC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163414913 262 + 180432695 AAATGAA----------AACCAGCTTACATACGGAATTTGAGGAGGCTTAATGTAAAGTGATTTTGCATAATTAGTCATCCTTATGGGATGCCATTTAATACCAGAAAGAAA--------CTCATCCTG----ACTGCTACTTATGCCAGGCTCAGTCTTCACATTCCATGCTTTTAGGTTTTCCAAATATCCTCACTGTAT--TAAGAACTCAGCCAGGGAGCTGGGGCCTGGA-AG--ATTCAACAAAAGAGGTCATCTCATGGCTAGTCCATCAAAGAGAGGAGTC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110443785 262 + 127223203 AAATGAA----------AACCAGCTTACATGTGGAATTTGAGGAGGCTTAATGTAAAGTGATTTTGCATAATTAGTAATCCTTATGGGATGCCATTTAATACCAGAAAGAAA--------CTCATCCTG----ACTGCTACTTATGCCAGGCTCAGTCTCCACATTTCATGCTTTTAGGTTTTCCAGATATCCTCACTGTAT--TAAGAACTCAGCCAGGGAGCTGGGGCCTGGA-AG--ATTCAACAAAAGAGGTCATCTCATGGCTAGTCCATCAAAGAGAGGAGTC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23790672 262 - 128169293 AAATGAA----------AACCAGCCTACATATGGAACTTGTAGAGGCTTAATGGAAAGTAATTTTGCATAACTAGTAATCCTTATGGGATGCCATTTAATACAAGAAAAAAAAAAAAAACCTCATCCCG----AATGCTACTTATCCCAGGCTCAGTCTTCACACTCCAAGCTTTTAGGTTTTCCGAATATCCTCACTGTAT--TAAGAACTCAGCTAGGGAGCTG------AGA-AG--ATTCAATAAAAAGGGTCATTTCGTGGCTAGTCCA--ACAGAGAGGAGTC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40429335 244 + 149736546 GAATTAA---------GGAATAACTTCTATATGGAATTTGT--AGTTTAAAGAAAAAAAGGTTCTGTAGAAATAGAAATCCTTAAGGGAAATTATTTAATGCCAGAA--AAA--------CTTGACATGTAGTACTCCTACCTATCCCACGCTCGGAATACATACCCCA--CTCTCAAATTCACCAAACATCTTTCCTCTAT--TGAAAAAAGAACAGTGTGGC---AGCCTGGA-AGGAATCCAGCAAGCAGGGACCTT-------------ATAAAAGA---GCCTC
i mm10.chr6                C 0 C 0
s canFam3.chr16             52112557 267 -  59632846 aaatgaaaaaaATTAGAAACCAGTTTACATATAAAACTTGTAGAGGCTTCGAGGAAAGCGATTCTGCAAAAAT-GAAATCATTGCGGTGAGTAATTAAATGCCAGAAA-AAC--------CCCCCACTG----AATG-TAGCCACCCCAGGCCCGGTCTCCCCACTGCAAGCCCTCTAGCCTCCCAAATACCCTCACTGCCCCGTAGGAACTGCGCCAGGAAGCTGGGGCCCCGACGG--ATTCAACAAAAG-GCTCATCTGAGGGGTA----ACCAGAGAAAGAGGGT
i canFam3.chr16            I 190 I 572

a score=342081.000000
s hg38.chr7_GL383534v2_alt     62332 100 +    119183 GCCAGTGACAAGTGCCTTTTTCTCCCCTAACTTGCTCTCTTTCCATCTCTGTGTCCTTTCTCATCTTGGACCATGACTTGGACCTATTACAGGTACTTAC
s panTro4.chr7             143162331 100 + 161824586 GCCAGTGACAAGTGCCTTTTTCTCCCCTAACTTGCTCTCTTTCCATCTCTGTGTCCTTTCTCATCTTGGACCATGACTTGGACCTATTACAGGTACTTAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138983472 100 + 157549271 GCCACTGACAAGTGCCTTTTTCTCCCCTAACTTGCTCTCCTTCCATCTCTGTGTCCTTTCTCATCTTGGACCATGACTTGGGCCTATTACAGGTACTTAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93105994 100 + 110113093 GCCACTGACAAGTGCCTTTTTCTCCCCTAACTTGCTCTCCTTCCATCTCTGTGTCCTTTCTCATCTTGGACCATGACTTGGGCCTATTACAGGTACTTAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180998103 100 + 198365852 GCCACTGACAAGTGCCCTTTTCTCCTCTAACTTGCTCTCCTTCCATCTCCGTGTCCTTTCTCATCTTGCACCATGACTTGGGCCTATTACGGGTACTTAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174744018 100 + 192294377 GCCACTGACAAGTGCCCTTTTCTCCTCTAACTTGCTCTCCTTCCATCTCCGTGTCCTTTCTCATCTTGCACCATGACTTGGGCCTATTACGGGTACTTAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163415175 100 + 180432695 GCCACTGACAAGTGCCCTTTTCTCCCCTAACTTGCTCTCCTTCCATCTCCGTGTCCTTTCTCATCTTGCACCATGACTTGGGCCTATTACGGGTACTTAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110444047 100 + 127223203 GCCACTGACAAGTGCCCTTTTCTCCCCTAACTTGCTCTCCTTCCATCTCCGTGTCCTTTCTCATCTTGCACCATGACTTCGGCCTATTACAGGTACTTAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23790934 100 - 128169293 GCCCCTGACAAGTGCCTTTTTCTCCCCTAACTTTCTCTCCTTCCATCTCTGTGTCCTTTCTCATCTTGGGCCATGCCTTGGGCCTATTACAAGTACTTAT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40429579  97 + 149736546 ATCGCTGGCACATGCCTTTCCCTTC---AGCTTGGTTTCCTTCCAGCTCTGTATCCTCCCAGCTCTTAGGCCACACCTTGGGTCTATCACAGGGCCCGGA
i mm10.chr6                C 0 C 0
e canFam3.chr16             52112824 572 -  59632846 I

a score=1407327.000000
s hg38.chr7_GL383534v2_alt     62432 392 +    119183 AGGCACTTCCTAGCCTCTA-CTGCAAAGACAACTTCTGAGGAGGGATTCAC---ATGACCACGGGAGGCACAAATGTGGCAATATGCATTGTGTACATTCAG-----CTGGTCATTGAACAAATATTGGTGGAGCACAACTTGGCAGCACGGT-GCCTGCCAGGTGCTGAGCTCATGCAAAGGCAAATATGTCTCTGTTTAAAGGAACTTGGACTAACCGACTACGAGGCTGGCAGCTC-AGTTACCCAGGCAAAGCCAGAAGGTCAGTGTCGCGCCTGGCTGAGGATGTACA-GATGGTCTGAACCCTGCCA-------CTTCACAGCTCCAAAGGTCAGCCTGACAGCTCTGTGCA--CCAGGGCCTCCCAGAGCTGGGGTTTTATAAGCCCATGGG--------------CTAGGCCAGAGGTA
s panTro4.chr7             143162431 392 + 161824586 AGGCACTTCCTAGCCTCTA-CTGCAAAGACAACTTCTGAGGAGGGATTCGC---ATGACCACGGGAGGCACAAATGTGGCAATATGCATTGTGTACATTCAG-----CTGGTCACTGAACAAATATTGGTGGAGCACAACTTGGCAGCACGGT-GCCTGCCAGGTGCTGAGCTCATGCAAAGGCAAATATGTCTGTGTTTAAAGGAACTTGGACTAACCGACTATGAGGCTGGCAGCTC-AGTTACCCAGGCAAAGCCAGAAGGTCAGTGTCACGCCTGGCTGAGGATGTACA-GATGGTCTGAACCCTGCCA-------CTTCGCAGCTCCAAAGGTCAGCCTGACAGCTCTGCGCA--CCAGGGCCTCCCAGAGCTGGGGTTTTATAAGCCCACGCG--------------CTAGGCCAGAGGTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138983572 390 + 157549271 AGGCACTTCCTAGCCTCTA-CTGCAAAGACAACTTCTGAGGAGGGATTCAC---ATGACCACGGGAGGCACAAATGTGGCAATATGCATTGTGTACATTCAG-----CTGGTCATTGAACAAATATTGGTGGAG--CAACTTGGCAGCAGGGT-GCCTGCCAGGTGCTGAACTCATGCAAAGGCAAATATGTCTGTGTTTAAAGGAACTTGGACTAACCGACTATGAGGCTGGCAGCTC-AGTTACCCAGGGAAAGCCAGAAGGCCAGTGTCGCACCTGGCTGAGGACATACA-GATGGTCTGAACTCTGCCA-------CTCCACAGCTCCGAAGGTCAGCCTGACAGCTCTGTGCA--CCAGGGCCTCCCAGAGCTGGGGTTTTATAAGCCCATGGG--------------CTAGGCCAGATGTA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93106094 393 + 110113093 AGGCACTTCCTGGCCTCTA-CTGCAAAGAGAACTTCTGAGGAGGGATTCAC---ATGACCACGGGAGGCACAAATGTGGCAATATGCATTGTGTACATTCAG-----CTGGTCATTGAACAAATATTGGTGGAGCACAACTTGGCAGCATGGT-GTCTGCCAGGTGCTGAGCTCATGAAAAGGCAAATATGTCTGTGTTTAAAGGAACTTGGACTAACCGACTATGAGGCTGGCAGCTCAAGTTACCCAGGGAAAGCCAGAAGGCCAGTGTCGCGCCTGGCTGAGGACATACA-GATGGTCTGAACCCTGCTA-------CTCCACAGCTCTGAAGGTCAGCCTGACAGCTCTGTGCA--CCAGGTCCTCCCAGAGCTGGGGTTTTATAAGCCCATGGG--------------CTAGGCCAGATGTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180998203 395 + 198365852 AGGCACTTCCTAGCCTCTA-CTGCAAAGACAACTTCTGAGGAGGGATTCACACGACGACCACGGGTGGTACAAATGTAGCAATATGCATTGTGGACCTTCAG-----CTGGTTATTGAACAAATATTGGTGGGGCACAACCTGGCAGCAGGGT-GCCTGCCAGGTGCTGAGCTCATGCAAAGGCAAGTATGTCTGTGTTTAAAGGAACTTGGACTAACAGACTATGAGGCTGGCAGCTC-AGTTACCCAGGGAAAGACAGAAGACCAGTGCCGCGCCTGGCTGAGGGTGTACA-GATGGTCCGAACCCTGCCA-------CTCCACAGCTCCGAAGGTCAGCCTGACAGCTCTGTGCA--CCAGGGCCTCCCAGAGCTGGGGTTTTATAAGCCCACGGG--------------CTAGGCCAGATGTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174744118 395 + 192294377 AGGCACTTCCTAGCCTCTA-CTGCAAAGACAACTTCTGAGGAGCGATTCACACGACGACCACGGGTGGTACAAATGTAGCAATATGCATTGTGGACCTTCAG-----CTGGTTATTGAACAAATATTGGTGGGGCACAACCTGGCAGCAGGGT-GCCTGCCAGGTGCTGAGCTCATGCAAAGGCAAGTATGTCTGTGTTTAAAGGAACTTGGACTAACAGACTATGAGGCTGGCAGCTC-AGTTACCCAGGGAAAGACAGAAGACCAGTGCCGCGCCTGGCTGAGGGTGTACA-GATGGTCCGAACCCTGCCA-------CTCCACAGCTCCGAAGGTCAGCCTGACAGCTCTGTGCA--CCAGGGCCTCCCAGAGCTGGGGTTTTATAAGCCCACGGG--------------CTAGGCCAGATGTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163415275 395 + 180432695 AGGCACTTCCTAGCCTCTA-CTGCAAAGACAACTTCTGAGGAGGGATTCACACAACGACCACGGGCGGCACAAATGTAGCAATATGCATTGTGGACATTCAG-----CTGGTCATTGAACAAATATTGGTGGGGCACAACCTGGCAGCAGGGT-GCCTGCCAGGTGCTGAGCTCATGCAAAGGCAAATATGTCTGTGTTTAAAGGAACTTGGACTAACAGACTATGAGGCTGGCAGCTC-AGTTACCCAGGGAAAGACAGAAGGCCAGTGCCGCGCCTGGCTGAGGGTGTACA-GATGGTCTGAACCCTGCCA-------CTCCACAGCTCCGAAGGTCAGCCTGACAGCTCTGTGCA--CCAGGGCCTCCCAGAGCTGGGGTTTTATAAGCCCACGGG--------------CTAGGCCAGGTGTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110444147 395 + 127223203 AGGCACTTCCTAGCCTCTA-CTGCAAAGACAACTTCTGAGGAGGGATTCACACAACGACCACGGGCGGCACAAATGTAGCAATATGCATTGTGGACATTCAG-----CTGGTCATTGAACAAATATTGGTGGGGCACAACCTGGCAGCAGGGT-GCCTGCCAGGTGCTGAGCTCATGCAAAGGCAAATATGTCTGTGTTTAAAGGAACCTGGACTAACAGACTATGAGGCTGGCAGCTG-AGTTACCCAGGGAAAGACAGAAGGCCAGTGCCGCGCCTGGCTGAGGATGTACA-GATGGTCTGAACCCTACCA-------CTCCAGAGCTCCGAAGGTCAGCCTGACAGCTCTGTGCA--CCAGGGCCTCCCAGAGCTGGGGTTTTATAAGCCCATGGG--------------CTAGGCCAGATGTA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23791034 384 - 128169293 AGGCACTTCCTAGCTTCTA-CTGCAAAGACAGCTTCTGAGGAGGGATTCAC---ACCACTACAGGAGGAACAAATGTGGTAATCTGCATTGTGTACATTCAG-----CCGGTCATTCAACAAATATTGGTGGAACATAACATGGCAGTACAGTCGCCTGCCAGGTGCTGAGCTCATGCAAAGGCAAATACGTCTGCATTTAAAGGAACTTGGACTAACAGACTATGAAGCTGGCAGCTT-GGTCACCCAGGGAAGGCCAGAC-ACCAGTGCT-------GCTGAGGAGGTACA-GATAGTCTGAAC-CTGCCA-------CTCCACAGCTCTGAAGGTCAGCCTGACAGCTCTGTGCA--CCAGGGCCTCCCACAGCTGGGGTTTTATAAGCCCAGGGG--------------GTAGGCCAGATACA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40429676 395 + 149736546 AGGTCCTGCCTGGCCCCTC-CTGCATAGACAGCTTAGGAGAAGGATTTCAT---ATGGTCACCTAAGGAACAAATGAGGTGATCTGAAATGTGTACATTCAGCTGGTCTGGTCATTCAGTAAATATTGGTAGAGTCTAACTTGGCAGCACAAT-GCCC----AGTGCTGAGCTCATGCAAAGGTAAACATACTCCCATTCAAGGGAAC-TGGAGCGACAAATAATTGGGCTAGCAGCTT-ATGTTCCTAGGGAAAG---------------CGTGTAGGGCTGTGGATGCACACGTTGTTCTGAACTCTGCCATTCCCCCCTCCCCTGACTCTAAGGTGAGCCCAGGGGCTCTTC-----TGAGAGCCTCCCA-AGCTGATGTTTTCAAAACTCTTGAGGGAGGGTTTCTATCCCAAGCTAAGGATA
i mm10.chr6                C 0 I 182
s canFam3.chr16             52113396 367 -  59632846 AGGCCCCACCTTGCCTCCAGCTTCAAAGACAACTT----AGAGGGA--------AGGGCCACAG-----------GTGGCCATCTGCGTTAGGGACATCCAA-----CCAGCCGGTCAATAAATATTGGCAGAACATGACTTGGCAGCA-AGT-----GCCAGGGGCTGGGCTCCTGCAAAGGCAAACATGTCCCTGTTGAAAGGAACGGGGGCTCCCAGCTCCCTGGGCCGGTGGCTC-AGCCACCCAGGGGAAGCCAGAGGGCAAG-GCCGAGCCTGGCTGTGGATGGACA-GATGGTGTGCAC-CTGCCA-------C-CTGCCGTTCTGAAGGTCAGCCTGGCAGCTGCGTACATGCCAGAGCCTCCCAGGGCTGGTGTTTGGGGAGCTCCGGCC--------------CCAGGTGAGTCACC
i canFam3.chr16            I 572 C 0

a score=391325.000000
s hg38.chr7_GL383534v2_alt     62824 132 +    119183 GGCTGTCCTATCTAGGTTGACC---ACTGCCTCTGTCTTCCAAAACTAGTTCTGTTTAAATGAGAAATGACCAAACCCCCAGCTGTCTTAAAATTCATCACTATTTCCTAGGGAGATTGGACATTAACTGCAGTA
s panTro4.chr7             143162823 131 + 161824586 GGCTGTCCTATCTAGGTTGACC---ACTGCCTCTGTCTTCCAAAACTAGTTCTGTTTAAATGAGAAATGACCAAACCCCCAGCTGTCTTAAAAT-CATCACTATTTCCTAGGGAGATTGGACATTAACTGCAGTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138983962 132 + 157549271 GGCTGTCCTATCTAGGTTGACC---ACTGCCTCTGTCTTCCAAAACTAGTTCTGTTTAAATGAGAAATGACCAAACCCCCAGATGTCTTAAAATTCATCACTATTTCCTAGGGAGATTGGACATTAACTGCAGTA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93106487 132 + 110113093 GGCTGTCCTATCTAGGTTGACC---ACTGCCTCTGTCTTCCAAAACTAGTTCTGTTTAAATGAGAAATGACCAAACCCCCAGATGTCTTAAAATTCATCACTATTTCCTAGGGAGATTGGACATTAACTGCAGTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180998598 132 + 198365852 GGCTGTCCTATCTAGGTTGACA---ATTGCCTCTGACTTCCAAAACTACTTCTGTTTAAAGGAGAAATGACCAAACCCCCAGATGTCTTAAAATTCATCACTATTTCCTATGGATAACGAACATTAACTGCAGTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174744513 132 + 192294377 GGCTGTCCTATCTAGGTTGACA---ATTGCCTCTGACTTCCAAAACTACTTCTGTTTAAAGGAGAAATGACCAAACCCCCAGATGTCTTAAAATTCATCACTATTTCCTATGGATAACGAACATTAACTGCAGTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163415670 132 + 180432695 GGCTGTCCTATCTAGGTTGACA---ATTGCCTCTGACTTCCAAAACTACTTCTGTTTAAAGGAGAAATGACCAAACCCCCAGATGTCTTAAAATTCATCACTATTTCCTATGGATAACGAACATTAACTGCAGTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110444542 132 + 127223203 GGCTGTCCTATCTAGGTTGACA---ATTGCCTCTGACTTCCAAAACTACTTCTGTTTAAAGGAGAAATGACCAAAATCCCAGATGTCTTAAAATTCATCACTATTTCCTATGGATAACGAACATTAACTGCAGTA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23791418 132 - 128169293 GGCTGTCCTATCTATGTTGACT---ACTGCCTCTGTCTTCCAAAACTAGTTCTGTTTAAATGAGAAATGACCAAACCCCCAGATGTCTTAAAATTCATCACTATTTCCTAGGGAAAATGGACATTAACTGCTATG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52113763 110 -  59632846 CTCCATCCTGTGAACGACAACCAGGACCGCCTCTGCCTCCT-------TTGCTGCTTCCCCGTGAGGTGGCCTCGGC------------------AACCAGCACTTCTCCGGGAGAACAGACACCAGTGCTAACC
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40430071 182 + 149736546 I

a score=519532.000000
s hg38.chr7_GL383534v2_alt     62956 148 +    119183 ACTGCTGTCT---------------------------GCTAGAAAGTTCACCTCAAAATATTTAAAATAGAGAAAGCAATGATCTTGAACCAAAACAATCTCTTTTTAATAGGAAATATGTGAATTT-CTTCTTCCTCCT-----------CTGTTAGATGGTTCCCAAGCAAGCACTTCCTCCTGA
s panTro4.chr7             143162954 148 + 161824586 ACTGCTGTCT---------------------------GCTAGAAAGTTCACCTCAAAATATTTAAAATAGAGAAAGCAATGATCTTGAACCAAAACAATCTCTTTTTAATAGGAAATATGTGAATTT-CTTCTTCCTCCT-----------CTGTTAGATGGTTCCCAAGCAAGCACTTCCTCCTGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138984094 147 + 157549271 ACTGCTGCCT---------------------------GCTAGAAAGTTCACCTCAAAATA-TTAAAATAGAGAAAGCAATGATCTTGAACCAAAACAATCTCTTTTTAACAGGAAATATGTGAATTT-CTTCTTCCTCCT-----------CTGTTAGATAGCTCCCAAGCAAGCACTTCTTCCTCA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93106619 148 + 110113093 ACTGCTGCCT---------------------------GCTAGAAAGTTCACCTCAAAATATTTAAAATAGAGAAAGCAATGATCTTGAACCAAAACAATCTCTTTTTAATAGGAAATATGTGAATTT-CTTCTTCCTCCT-----------CTATTAGATGGCTCCCAAGCAAGCACTTCCTTCTGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180998730 148 + 198365852 ACTGTGGTCT---------------------------GCTAGAAAGTTCACCTCAAAATATTTAAAATAGAGAAAGCAATGATCTTGAACCAAAACAATCTCTTTTTAATAGGAAATATGTCCATTT-CTTTTTCCTCCT-----------CTGTTAGATGACCCCCAAGCAAGCACTTCCTCCTGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174744645 148 + 192294377 ACTGTGGTCT---------------------------GCTAGAAAGTTCACCTCAAAATATTTAAAATAGAGAAAGCAATGATCTTGAACCAAAACAATCTCTTTTTAATAGGAAATATGTCCATTT-CTTTTTCCTCCT-----------CTGTTAGATGACCCCCAAGCAAGCACTTCCTCCTGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163415802 148 + 180432695 ACTGTGGTCT---------------------------GCTAGAAAGTTcacctcaaaatatttaaaatagagaaagcaaTGATCTTGaaccaaaataatctctttttattaggaaatatgtccattt-ctttttcctcct-----------ctgttagATGACCCCCAAGCAAGCACTTCCTCCTGA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110444674 148 + 127223203 ACTGTGGTCT---------------------------GCTAGAAAGTTCACCTCAAAATATTTAAAATAGAGAAAGCAATGATCTTGAACCAAAACAATCTCTTTTTAATAGGAAATATGTCGATTT-CTTTTTCCTCCT-----------CTGTTAGATGACCCCCAAGCAAGCACTTCCTCCTGA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23791550 146 - 128169293 ACTGCTGCTG---------------------------GCTAGAAAGTTCACCTCCAAATATTTAAAATAGAGAAAGCAATGATATTGAACCAAAACAATTTCTTTTTAATAGGAAATATGTGAATTT-TTTCTTCCTC-------------CTGTTAGGTGACTCTGCAGCAAGCACTTCTTCTTGA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40430253 161 + 149736546 ACTGGTGTCTACAGAGCACAGTCCATATCCACGCCAAACTGGCTGGCCCATCTCAAAGCCTTTGAAGTAGAGAAAAGAACAATCCTGACCC----CAACCTCTTAGAAGTTAGAAATTTG----------GTTCCCCCTT-----------CTTTTGGGTGGCTCC-AGTCAAGTACTTCCTCTTGA
i mm10.chr6                I 182 C 0
s canFam3.chr16             52113873 155 -  59632846 GCTGCTGCCT---------------------------CTTAGAAAGTTCATCTCGAAATAGTCCAAGTAGACAGAACAAGGATCCC-AACCAAAATAATCTCT----AAGGGGAAATACGTGACTTTCCTTCCTCCTCCTCCTCCCCATTCCCGTTGGGTGGTTCCCAATCAAGAATTTCCTCTtga
i canFam3.chr16            C 0 I 281

a score=4500.000000
s hg38.chr7_GL383534v2_alt     63104 1 +    119183 G
s panTro4.chr7             143163102 1 + 161824586 G
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138984241 1 + 157549271 G
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93106767 1 + 110113093 G
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180998878 1 + 198365852 G
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174744793 1 + 192294377 G
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163415950 1 + 180432695 G
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110444822 1 + 127223203 G
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23791696 1 - 128169293 G
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40430414 1 + 149736546 G
i mm10.chr6                C 0 I 297
e canFam3.chr16             52114028 281 -  59632846 I

a score=114200.000000
s hg38.chr7_GL383534v2_alt     63105 36 +    119183 CTCTTCATTTCCTATCCAGAGACTGCCTCAGCTGGA
s panTro4.chr7             143163103 36 + 161824586 CTCTTCATTTCCTATCCAGAGACTGCCTCAGCTGGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138984242 36 + 157549271 CTCTTCATTTCCTATCCAGAGACTGCCTCAGGTGGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93106768 36 + 110113093 CTCGTCATTTCCTATCCAGAGACTGCCTCAGCTGGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180998879 36 + 198365852 CTCTTCATTTCCTATCCAGAGACTGCCTCAGCTGGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174744794 36 + 192294377 CTCTTCATTTCCTATCCAGAGACTGCCTCAGCTGGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163415951 36 + 180432695 CTCTTCATTTCCTATCCAGAGACTGCCTCAGCTGGA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110444823 36 + 127223203 CGCTTCATTTCCCATCCAGAGACTGCCTCAGCTGGA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23791697 36 - 128169293 CTCTTCATTTCCTAAGCAGAGACTGCCTCAGCTGGA
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40430415 297 + 149736546 I
e canFam3.chr16             52114028 281 -  59632846 I

a score=396963.000000
s hg38.chr7_GL383534v2_alt     63141 130 +    119183 GATCCTCTTCCAGCTCC-TCTGACCTCAGGAGTGGAACT--------------CCCACCCCAGCACGTGCCTGAGGTTTTACTCTTTC-----------------------CACGGTTCTCTTCCCATCTGTGTATACATATGCCCTGATTGTAATCAGGAAGTCAAA
s panTro4.chr7             143163139 130 + 161824586 GATCCTCTTCCAGCTCC-TCTGACCTCAGGAGTGGAACT--------------CCCACCCCAGCACGTGCCTGAGGTTTTACTCTTTC-----------------------CACGGGCCTCTTCCCATCTGTGTATACATATGCCCTGATTGTAATCAGGAAGTCAAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138984278 130 + 157549271 GATCCTCCTCCAGCTCC-TCTGACCTCAGGAGTGGAACT--------------CCCACCCCAGCACGTGCCTGAGGTTTTACTCTTTC-----------------------CACGGGCCTCTTCCCATCTGTGTATACATATGCCCTGATTGTAATCAGGAAGTCAAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93106804 130 + 110113093 GATCCTCTTCCAGCTCC-TTTGACCTCAGGAGTGCAACG--------------CCCACCCCAGCAGGTGCCTGAGGTTTTACTCTTTC-----------------------CACGGGCATCTTCCCATCTGTGTATACATATGGCCTGATTCTAATCAGGAAGTCAAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180998915 122 + 198365852 GATCCTCTTCCAGCTCC-TCTGACCTGAGGAGTGGAACT--------------CCCACCCCAGCACGTGCCTGGGTTTTTACTCTTTC-----------------------CACGGGCATCTTCCCATCTGTGTATACA--------GATTCTAATCAGGAAGTCAAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174744830 122 + 192294377 GATCCTCTTCCAGCTCC-TCTGACCTGAGGAGTGGAACT--------------CCCACCCCAGCACGTGCCTGGGTTTTTACTCTTTC-----------------------CACGGGCATCTTCCCATCTGTGTATACA--------GATTCTAATCAGGAAGTCAAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163415987 122 + 180432695 GATCCTCTTCCAGCTCC-TCTGACCTGAGGAGTGGAACT--------------CCCACCCCAGCACGTGCCTGGGTTTTTACTCTTTC-----------------------CACGGGCATCTTCCCATCTGTGTATACA--------GATTCTAATCAGGAAGTCAAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110444859 122 + 127223203 GATCCTCTTCCAGCTCC-TCTGACCTGAGGAGTGGAACT--------------CCCACCCCAGCACGTGCCTGGCCTTTTACTCTTTC-----------------------CACGGGCATCTTCCCATCTGTGTATACA--------GATTCTAATCAGGAAGTCAAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23791733 129 - 128169293 GATCCTCTTCCAGCTCC-TCTGACCTCAGGAGTGGAA-T--------------TCTGCCCCAGCACGTGCCTGGGGTTTTACTCTTTC-----------------------CACGAGCATCTTCCCATCCGTATATACGTATGCCCTGATTCGAATCAGGAAGTCAAA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52114309 166 -  59632846 AATCCTGTTACAGCTCCTTCTGACCTCAAGAGTGGAACTTTGCACCCCTTTGCTCTCCCCCAACAGATTCCTTGAttcttttttttttttttttctttttttcttACCAGGCATCAGCTTCTTTCTAGCAGCATATACATCTGCT--AATTCCAGTCGGGAAGTAAGA
i canFam3.chr16            I 281 C 0
e mm10.chr6                 40430415 297 + 149736546 I

a score=728780.000000
s hg38.chr7_GL383534v2_alt     63271 213 +    119183 ACAAATCCTGTTTCAGG-----------------------------------------AATAAAGGCATGAATCAAAGAGT--ATTCTAGGTCCCAACAATACATTCCCTTCACATAACCA-----CCTAAAGGGGCCATCAGATCCCACAGGTG---GA--AA---CCTCCAAAGAGTA-TTTGGTTCAGAC-CCTAACATCAGAAAAGTAAATAACCCAGGTGAGTTGACTTTGGGTCTTACATGGTT-TG-AAACAGTCTTAAAACCACC
s panTro4.chr7             143163269 211 + 161824586 ACAAATCCTGTTTCAGG-----------------------------------------AATAAAGGCATGAATCA--GAGT--ATTCTAGGTCCCAACAATACATTCCCTTCACATAACCA-----CCTAAAGGGGCCATCAGATCCCACAGGTG---GA--AA---CCTCCAAAGAGTA-TTTGGTTCAGAC-CCTAACATCAGAAAAGTAAATAACCCAGGTGAGTTGACTTTGGGTCTTACACGGTT-TG-AAACAGTCTTAAAACCACC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138984408 213 + 157549271 ACAAATCCTGTTTCAGG-----------------------------------------AATAAAGGCAAGAATCCAAGAGT--ATTCTAGGTCCCAACAATACATTCCCTTCACATAACCA-----CCTAAAGGGGCCACCAGATCCCACAGGTG---GA--AA---CCTCCAAAGAGTA-TTTGGTTCAGAC-CCTAACGCCAGAAAAGTAAATAACCCATGTGAGTTGACTTTGGGTCTTACACGGTT-TG-AAACAGTCTTAAAACCACC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93106934 212 + 110113093 ACAAATCCTGTTTCAGG-----------------------------------------AATAAAGGCATGAATCA--GAGT--ATTCTAGGTCCCAACAATACATTCCCTTCACATAACCA-----CTTAAAGGGGCCACCAGATCCCACAGGTG---GA--AA---CCTCCAAAGAGTA-TTTGGTTCAGAC-CCTAACACCAGAAAAGTAAATAACCCATGTGAGTTGACTCTGAGTCTTACACGGTT-TGAAAACAGTCTTAAAACCACC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180999037 213 + 198365852 ACAAATCCTGTTTCAGG-----------------------------------------AATAAAGGCAGGCAACCAAGAGT--ATTCCAGGTCCCAACACCACATTCCCTTCACATAACCA-----CCTAAAGGGGCCACCAGATCCCACAGATG---GA--AA---CCTCCAAAGAGTA-TTTGGTTCAGAC-CCTAACACCAGAAAAGTAAATAACCCACGTGAGTTGACTTTGGGTCTGACATGGTT-TG-AAACAGTCTTTAAACCACC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174744952 213 + 192294377 ACAAATCCTGTTTCAGG-----------------------------------------AATAAAGGCAGGCAACCAAGAGT--ATTCCAGGTCCCAACACCACATTCCCTTCACATAACCA-----CCTAAAGGGGCCACCAGATCCCACAGATG---GA--AA---CCTCCAAAGAGTA-TTTGGTTCAGAC-CCTAACACCAGAAAAGTAAATAACCCACGTGAGTTGACTTTGGGTCTGACATGGTT-TG-AAACAGTCTTTAAACCACC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163416109 213 + 180432695 ACAAATCCTGTTTTAGG-----------------------------------------AATAAAGGCAGGCAACCAAGAGT--ATTCCAGGTCCCAACACCACATTTCCTTCACATAACCA-----CCTAAAGGGGCCACCAGATCCCACAGATG---GA--AA---CCTCCAAAGAGTA-TTTGGTTCCGAC-CCTAACACCAGAAAAGTAAATAACCCATGTGAGTTGACTTTGGGTCTTACATGGTT-TG-AAACAGTCTTTAAACCACC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110444981 213 + 127223203 ACAAATCCTGTTTCAGG-----------------------------------------AATAAAGGCAGGCAACCAAGAGT--ATTCCAGGTCCCAACAACACATGCCCTTCACATAACCA-----CCTAAAGGGGCCACCAGATCCCACAGATG---GA--AA---TCTCCAAAGAGTA-TTTGGTTCAGAC-CCTAACACCAGAAAAGTAAATAACCCACGTGAGTTGACTTTGGGTTTTACATGGTT-TG-AAACAGACTTTAAACCACC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23791862 216 - 128169293 TCAAATCCTGTTTCAGG-----------------------------------------AATAAATGCACAAATCCAAGAGT--ATTCTAGGTCCCAACAACACATTCCCTTTATGTAACCA-----CCTGAAGGGGCCACCAGATCCCACAGATG---GA--AAACTCCTCCAAAGAGTA-TTTGGTTCAGAC-CCCAACACCAGAAAAGTAAATAACCCATGTGAGCTGACTTGGGGTCTTACACGGTT-TG-AAACAGGCTTAAAACCACC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40430712 249 + 149736546 acagatcctgcctcaaaataacaaaCAAAAACCAAACAAATGACAACAACAACCCAATAATAAAGGCAAGAAGC-AGGAGCCAACTGTTGGTTGCAACAACACATTACTTGAATATAATAATGTTTTTTAAACAAGCCACTAAATCCATGGGATA---GAAGAA---CCATCAAAGAGTGTTTTGGTCCAGTC-CCTGTC--------------CAGCCATTACCAATCGACTTCAGGTCTTCAGTATTT-TG-ATGAAATCTTACATAGCCC
i mm10.chr6                I 297 C 0
s canFam3.chr16             52114475 208 -  59632846 AGGAATCCTGTCTCCAG-----------------------------------------AAGGAAGGCAAGAATCCGGGAAC--ACTTGTAGTCCCAGCACCACATTCCCTC------ATCT-----GCTTAGAGAGCCACCAGATGCCACAGGAGGGAGA--AA---CCTCAAAAGATTA-TTTGGTTCAGACTCCGAACACCAGAGAAGGAAACAGCCTCT----ACTGACTCTTGGTTGTAAATGGTTCTG-GAACAGTTTTTAAACCACC
i canFam3.chr16            C 0 I 208

a score=545299.000000
s hg38.chr7_GL383534v2_alt     63484 142 +    119183 TAGTCTGAGAGCACATCCAAAGCAAAGAGAAAAGCATCAGGATAAAGAATCCTGAGTCAGGAAGAAGCTAATCCTGCTGATTTAAAGTCAGCTATATGCCAATCCATGGCTGAATTCCAATGCATTCACTTTACAAAGAAAG
s panTro4.chr7             143163480 142 + 161824586 TAGGCTGAGAGCACATCCAAAGCAAAGAGAAAAGCATCAGGATAAAGAATCCTGAGTCAGGAAGAAGCTAATCCTGCTGATTTAAAGTCAGCTATATGCCAATCCATGGCTGAATTCCAATGCATTCACTTTACAAAGAAAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138984621 142 + 157549271 TAGGTTGAGAGCACATCCAAAGCAAAGAGAAAAGCATCAGGATAAAGAATTCTGAGTCAGGAAGAAGCTAATCCTGCTGATTTAAAGTCAGCTATATGCCAATCCATGGCTGAATTCCAATGCATTCACTTTACAAAGAAAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93107146 142 + 110113093 TAGGCTGAGAGCACATCCAAAGCAAAGAGAAAAGCATCAGGATAAAGAATCCTGAGTCAGGAAGAAGCTAATCCTGCTGATTTAAAGTCAGCTATATGCCAATCCATGGCTAAATTCCAATGCATTCACTTTACAAAGAAAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180999250 142 + 198365852 TAGGCTGAGAGCACATACAAGGCAAAGAGAAAAGCAACAGGATAAAGAATGCTGAGTCAGGAAGAAGCTAATCCTAGTGATTTAAAGTCAGCTATATGCCAATCCATGGCTGAATTCCAATGCATTCACTTTACAAAGAAAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174745165 142 + 192294377 TAGGCTGAGAGCACATACAAGGCAAAGAGAAAAGCAACAGGATAAAGAATGCTGAGTCAGGAAGAAGCTAATCCTAGTGATTTAAAGTCAGCTATATGCCAATCCATGGCTGAATTCCAATGCATTCACTTTACAAAGAAAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163416322 142 + 180432695 GAGGCTGAGAGCACATAcaaggcaaagagaaaagcaaCAGGATAAAGAATGCTGAGTCAGGAAGAAGCTAATCCTAGTGATTTAAAGTCAGCTATATGCCAATCCATGGCTGAATTCCAATGCATTCACTTTACAAAGAAAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110445194 142 + 127223203 TAGGCTGAGAGCACATACAAGGCAAAGAGAAAAGCAACAGGATAAAGAATGCTGAGTCAGGAAGAAGCTAATCCTAGTGATTTAAAGTCAGCTATCTGCCAATCCATGGCTGAATTCCAATGCATTCACTTTACAAAGAAAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23792078 138 - 128169293 TAGGTTGAGAGCACATCCAAAGCAAAGAGAAAAGCATCAGGATAAAGGATCCTGAGTCAAGAAGAAGCTAATCCTGGTTATTTAAAGTCAGCTACCTGCCAATTCATGACTGAATTCCCACGCATTCACTTTAC----AAAG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40430961 139 + 149736546 TAAA-TGAGAACACAACCAAAGC-ATGAGGCAGACA-CAGAATGGAGAGTTCTGAATCAGGGAGAAATTAATCCTGGTAACTTCAAGGCAGCCATATGTCAGCCCATGGCTGAATGCCAGTGCACCAATTTTACATAGGAAG
i mm10.chr6                C 0 I 56
s canFam3.chr16             52114891 139 -  59632846 TGGGATGAGAGCATGTGCACAGCAAAGG---AAGCATCGGTATAAAGACACCTGAGGCAGGAAGCAATGCATCCTGGGGATCTCAAGTCCGCCCCAGGCCAGTCCAAGACTGAATTCCAGCGCATTAATTCTAGGAGGAGGA
i canFam3.chr16            I 208 C 0

a score=325884.000000
s hg38.chr7_GL383534v2_alt     63626 100 +    119183 -ACCTTCCATTTCACAGATCCCATATCATTCTCCACTGGGTGGTAGTGTGGTGTGGATAAGGGGTG------------CAGGTAGACTTGGGCTCTGGCCCTAACTTTAGACA
s panTro4.chr7             143163622 100 + 161824586 -ACCTTCCATTTCACAGATCCCATATCATTCTCCACTGGGTGGTAGTGTGGTGTGGATAAGGGGTG------------CAGGTAGACTTGGGCTCTGGCCCTAACTTTAGACA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138984763 100 + 157549271 -ACCTTCCATTTCACAGATCCCATATCATTCTCCACTGGGTGGTGGTGTGGTGTGGATAAGGGGTG------------CAGGTAGACTTGGGCTCTGGCCCTAACTTTAGACA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93107288 100 + 110113093 -ACCTTCCATTTCACAGATCCCATATCATTCTCCACTGGGTAGTGGTGTGGTGTGGATAAGGGGTG------------CAGGTAGACTTGGGCTCTGGCCCTAACTTTAGACA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             180999392 100 + 198365852 -ACCTTCCATTTCACAGATCCCATATCATTCTCCACTGGGTGGTGGTGTGGTGTGGATAAGGGGTG------------CAGGTAGACTTGGACTCTGGCCCTAACTTTAGACA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174745307 100 + 192294377 -ACCTTCCATTTCACAGATCCCATATCATTCTCCACTGGGTGGTGGTGTGGTGTGGATAAGGGGTG------------CAGGTAGACTTGGACTCTGGCCCTAACTTTAGACA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163416464 100 + 180432695 -ACCTTCTATTTCACAGATCCCATATCATTCTCCACTGGGTGGTGGTGTGGTGTGGACAAAGGATG------------CAGGTAGACTTGGACTCTGGCCCTAACTTTAGACA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110445336 100 + 127223203 -ACCTTCCATTTCACAGATCCCATATCATTCTCCACTGGGTGGTGGTGTGGTGTGGACAAGGGGTG------------CAGGTAGACTTGGACTCTGGCCCTAACTTTAGACA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23792216 112 - 128169293 -ACCTTCCATTTCACAGATCCCATATCACTCACCACTGGATGGCGGTGTGGTACGGGTAAGAAGTGCAGGCACCGGCACAGGTAGACTTGGGTTCTGGCCCTAATGTCTAACA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52115030  93 -  59632846 ACCCTTCCATTTCCCGGGCCCTGTGTCATGTCACCCTGGGCAGCCGTGTGCAG-----AGGGAGGG------------CAGGC---CCCGGGACCTGGCTCGCCCCTGGGCCG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40431100  56 + 149736546 I

a score=3327915.000000
s hg38.chr7_GL383534v2_alt     63726 1037 +    119183 ----ACTTAATGGCTCTGTGCACCTGTTTTTCTCATGATGATGGTGTAGTCtgttg---ggaggatcagaggcaggtcactgaaacatgtggcacagtccttggcacacagcaggcactcaggaggt-ggtggGTATTACAATTACCATTTTTATTTTCCCCTCCTCAA--TTTTCAAGAGAAGAAACTGACTTCACAGCAGATGGCTACAAACTGATTTCTCCCTGAAAACCACA-AGCAGGTGAATCACCAACAGCCTGGGAAAGATTCTACCCGGGTGGGATT-AAGCAAATGAACCACAATTGTATT--------CCACTGGCATTAGGTGGAAATACAGGGGAA------GGATGGCGA-CATGAC--AGAGTTTCTCTTCCTGCGAGACGTTCTGGCCGGATATCAGAACAGGCTTTTTCTTTGCCTGCATT-TGAGCTGTCCATGCTTACGACTGCTCTTTGCATC-TTAAAATTGTCCTCCAAATTTTCCATTCACATTCTACTTTGTCACTTTCCCACCCATTGCTAGAGCCATTTATTATTTGCCACGAGTCAGATGACCTGGGCAGCGCTCCAAGTGGTGCCTCAGACACCAGACCTAGCCCTATTCTCACTGGGCCTCCATCATCTCCATTGTTTA------------AAAAAA----AA----ATGCTTATGTTTCATAGACTATACAGGGAATCTACAGAG------ATTAAAATTAGTGTGTGTGATTTT-------------------------------------------------------------------------------------------------------------------AAATGTACTCATGTGACATAAACATAGAAGCGCTCGGATACATTAAATTAAATAGGTGTTTAGATGTAATCTGGGCACTGGCTAGAGGCT----GAGGAACAGGTAGAAATTCATTCC--CAAGAAGAAAGGGAGAAACA-----------------TCTTGAAAACCTCAG-----------------------------------------------CAGGTGA--------------------------------------------------------------------------TCTGCCTCTC-------------------------------------------------------ACCTTACCCCTCCTCTTGCAAGCTGCCCCAG-------------------------------------------------------------------------------------TACAAACACAGGGAGCACAGG-AATTTCTCCCAGAC--------ACCCACAATAAAACTC----------TAAACGCAGCAGTGTAAAGTGAATCTCTTAT-AAAGAAACAGTCTAATG-AGGCAGATGCAAA-GATGTC---CAGACATTGTATGTTCAAAGCTTCATCGGCCTCC
s panTro4.chr7             143163722 1036 + 161824586 ----ACTTAATGGCTCTGTGCACCTGTTTTTCTCATGATTATGGTGAAGCCtgttg---ggaggatcagaggcaggtcactgaaacatgtggcacagtccttggcacacagcaggcactcaggaggt-ggtggGTATTACAATTACCATTTTTATTTTCCCCTCCTCAA--TTTTCAAGAGAAGAAACTGACTTCACAGCAGATGGCTACAAACTGATTTCTCCCTGAAAACCACA-AGCAGGTGAATCACCAACAGCCTGGGAAAGATTCTACCCAGGTGGGATT-AAGCAAATGAACCACAACTGTATT--------CCACTGGCATTTGGTGGAAATACAGGGAAA------GGATGGCGA-CACGAC--AGAGTTTCTCTTCCTGTGAGACGTTCTGGCCGGATATCAGAACAGGCTTTTTCTTTGCCTGCATT-TGAGCTGTCCATGCTTACGACTGCTCTTTGCATC-TTAAAATTGTCCTCCAAATTTTCCATTCACATTCTACTTTGTCACTTTCCCACCCATTGCTAGAGCCATTTATTATTTGCCACAAGTCAGATGACCTGGGCAGCGCTCCAAGTGGTGCCTCAGACACCAGACCTAGCCCTATTCTCACTGGGCCTCCATCATCTCCATTGTTTA------------AAAAAA----AA-----TGCTTATGTTTCATAGACTATACAGGGAATCTACAGAG------ATTAAAATTAGTGTGTGTGATTTT-------------------------------------------------------------------------------------------------------------------AAACATACTCATGTGACACAAACATAGAAGCGCTCGGATACATTAAATTAAATAGGTGTTTAGACGTAATCTGGGCACTGGCTAGAGGCT----GAGGAACAGGTAGAAATTCATTCC--CAAGAAGAAAGGGAGAAACA-----------------TCTTGAAAACCTCAG-----------------------------------------------CAGGCGA--------------------------------------------------------------------------TCTGCCTCTC-------------------------------------------------------ACCTTACCCCTCCTCTTGCAAGCTGCCCCAG-------------------------------------------------------------------------------------TACAAACACAGGGAGCACAGG-AATTTCTCCCAGAC--------ACCCACAATAAAACTC----------TAAACGCAGCAGTGTAAAGTGAATCTCTTAT-AAAGAAACAGTCTAATG-AGGCAGATGCAAA-GATGTC---CAGACATTGTATGTTCAAAGCTTCATCGGCCTCC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138984863 1039 + 157549271 ----ACTTAATGGCTCTGTGCACCTGTTTTTCTCGTGATTATGGTGAAGCCTGTCG---GGAGGATCAGAGGCAGGTCGTTGAAACATGTGGCACAGTCCTTGGCACACAGCAGACACTCAGGAGGT-AGTGGGTATTACAATTACCATTTTTATTTTCCCCTCCTCAA--TTTTCAAGAGAAGAAACTGACTTCACAGCAGATGGCTACAAACTGATTTCTCCCTGAAAACCACA-AGCAGGTGAATCACCAACAGCCTGGGAAAGATTCTGCCAGGGTGGGATT-AAGCAAATGAACCACAACTGTATT--------CCACTGGCATTTGGTGGAAATAAAGGGGAG------GGATGGCGA-CATGAC--AGAGTTTCTCTTCCTGCGAGACGTTCTGGCCGGATATCAGAACGGCCTTTTTCTTTGCCTGCATT-TGAGCTGTCCATGCTTACGACTGCTCTTTGCATC-TTAAAATTGTCCTCCAAATTTTCCATTCGCATTCTACTTTGTCACTTTCCCACCCATTGCTGGAGCCATTTATTATTTGCCACGAGTCAGATGACCTGGGCAGCGTTCCAAGTGGTGCCTCAGACACCAGACCTAGCCCTGTTCTCACTGGGTCTCCATCATCTCCATTGTTTA------------AAAAAA----A------TGCTTATGTTTCATAGACTATACAGGGAATCCACAGAG------ATTAATATTAGTGTGTGTGATTTT-------------------------------------------------------------------------------------------------------------------AAATATACTCATGTGACATAAACATAGAAGCGCTCAGATACATTAAATTAAATAGGTGTTTAGATGTAATCTGGGCACTGGCTAGAGGCTGAGGGAGGAACAGGTAGAAATTCATTCC--CAAGAAGAAAGGAAGAAACA-----------------TCTTGAAAACCTCAG-----------------------------------------------CAGGTGA--------------------------------------------------------------------------TCTGCCTCTC-------------------------------------------------------ACCTTATCCCTCCTTTTGCAAGCTGCCCCAA-------------------------------------------------------------------------------------TACAAACACACGGAGCACAGG-GATTTCTCCCAGAC--------ACCCACAATAAAACTC----------TAAACGCAGCAGTGTAAAGTGAATCTCTTAT-AAAGGAACAGTCTAATG-AGGCAGATGCACA-GATGTC---CAGACATTGTATGTTCAAAGTTTCATCGGCCTCC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93107388 1037 + 110113093 ----ACTTAATGGCTCTGTGCAGCTGTTTTTCTCATGATTATGGTGAAGCCtgttg---gaaggatcagaggcaggtcattgaaacatgtggcacagtccttggcacacagcaggcactcaggaggt-ggtggGTATTACAATTACCATTTTTATTTTCC---CCTCAA--TTTTCAAGAGAAGAAACTGACTTCACAGCAGATGGCTACAAACTGATTTCTCCCTGAAAACCACA-AGCAGGTGAATCACCAACAGCCTAGGAAAGATTCTGCCAGGGTGGGATT-AAGCAAATGAACCACAGTTGTATT--------CCACTGGCATTTGGTGGAAATACAGGGGAA------GGATGGCGA-CATGAG--AGAGTTTCTCTTCCTGCGAGACTTTCTGGCCGGATATCAGAACAGGCTTTTTCTTTGCCTGCATT-TGAGCTGTCCATGCTTACAACTGCTCTTTGCATC-TTAAAATCGTCCTCCAAATTTTCCATTCGCATTCTACTTTGTCACTTTCCCACCCATTGCTGGAGCCACTTATTATTTGCCACGAGTCAGATGACCTGGGCAGCGCTCCAAGTGGTGCCTCAGACACCAGACCTAGCCCTATTCTCACTGGGCCTCCATCATCTCCATTGTTTA------------AAAAAA----AA-----TGCTTATGTTTCATAGACTATACAGGGAATCTACAGAG------ATTAAAATTAGTGTGTGTGATTTT-------------------------------------------------------------------------------------------------------------------AAATATACTCATCTGACATAAAGATAGAAGCGCTCAGATACATTAAATTAAATAGGCGTTTAGATGTAATCTGGGCTCTGGCTAGAGGCTGAGGGAGGAAGAGGTAGAAATTCATTCC--CAAGAAGAAAGGCAGAAACA-----------------TCTTGAAAACCTCAG-----------------------------------------------CAGGTGA--------------------------------------------------------------------------TCTGCCTCTC-------------------------------------------------------ACCTTACCCCTCCTCTTGCAAGCTGCCCCAA-------------------------------------------------------------------------------------TACAAACACAGGGAGCACAGG-AATTTCTCCCAGAC--------ACCCACAATAAAACTC----------TAAACGCAGCAGTGTAAAGTGAGTCTCTTAT-AAACAAACAGTCTAATG-AGGCAGATGCAAA-GATGTC---CAGACATTGTATGTTCAAAGCTTCGTCGGCCTCC
i nomLeu3.chr13            C 0 I 73
s rheMac3.chr3             180999492 1038 + 198365852 ----ACTTAATGGCTCGGTGCAGCTGTTTTTCTCATGATTATGGTGAAGTCCgttg---ggaggatcagaggcaggttgttgaaacatgtggcacagtccttggcacacagtaggcactcaggaagt-ggtgggtattaCAATTACCATTTTTATTTTCCCCTCCTCAA--TTTTCAAGAGAAGAAACTGACTTCACAGCAGATGGCTACAAACTGATTTCTCCCTGAAAACCACA-AGCAGGTGAATCACCAACCACCTGGGAAAGATTCTGCCATGGAAGGATT-AAGCAAAAGAACCACAATTGTATT--------CCACTGGCATTTGGTGTAAATACAGGAGAA------GGACGCGGA-CATGAC----AGTTTCTCTTCCTACGAGACTTTCTGGCCGGGTATCAGAACTGGCTTTTTCTTTGCCTGCATT-TGAGCTGTCCATGCTTACGACTGTTGTTTGCATC-TTAAAATTGTCCTCCAAATTTTCCATTCGCATTCTACTTTGTCACTTTCCCACCCATTGCTGGAGCCATTTATTATTTGCCACGAGTCAGATGACCTGGGCAGCGCTCCAAGTCGTGCCTCAGACACCAGACCTAGCCCTAATCTCACTGGGCCTCCATCATCTCCATTGTTTT------------AAAAAA----GAAAAAATGCTTATGTTTCATAGACTATACAGGGAATCTATAGAG------ATTAAAATTAGCGTGTGTGATTTT-------------------------------------------------------------------------------------------------------------------AAATATACTCACCTGACATAAACATAGAAGCACTTAGATAC-----ATTAAATAGGCGTTTAGATGTACTCTGGGCACTGGCTAGAGGCTGAGGGAGGAACAGGTAGAAATTCATTCC--CAAGAAGAAAGGGAGAAACA-----------------GCTTGAAAACCTCAG-----------------------------------------------CAGGTGA--------------------------------------------------------------------------TCTGCCTCTC-------------------------------------------------------ACCTTACCCCTCCTCTTGCAAGCTGCCCCAG-------------------------------------------------------------------------------------TACAAACACACAGAGCACAGG-AATTTCTCCCAGAC--------ACCCACAATAAAACTC----------TAAACGCGGCAGTGTAAAGTTAATCTCTTAT-AAAGAAACAGTCTAATG-AGGCAGATGCACA-GATGCC---CAGACATTATATGTTCAAAGCTTCATCGGCCTCC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174745407 1038 + 192294377 ----ACTTAATGGCTCGGTGCAGCTGTTTTTCTCATGATTATGGTGAAGTCCgttg---ggaggatcagaggcaggttgttgaaacatgtggcacagtccttggcacacagtaggcactcaggaagt-ggtgggtattaCAATTACCATTTTTATTTTCCCCTCCTCAA--TTTTCAAGAGAAGAAACTGACTTCACAGCAGATGGCTACAAACTGATTTCTCCCTGAAAACCACA-AGCAGGTGAATCACCAACCACCTGGGAAAGATTCTGCCATGGAAGGATT-AAGCAAAAGAACCACAATTGTATT--------CCACTGGCATTTGGTGTAAATACAGGAGAA------GGACGCGGA-CATGAC----AGTTTCTCTTCCTACGAGACTTTCTGGCCGGGTATCAGAACTGGCTTTTTCTTTGCCTGCATT-TGAGCTGTCCATGCTTACGACTGTTGTTTGCATC-TTAAAATTGTCCTCCAAATTTTCCATTCGCATTCTACTTTGTCACTTTCCCACCCATTGCTGGAGCCATTTATTATTTGCCACGAGTCAGATGACCTGGGCAGCGCTCCAAGTCGTGCCTCAGACACCAGACCTAGCCCTAATCTCACTGGGCCTCCATCATCTCCATTGTTTT------------AAAAAA----GAAAAAATGCTTATGTTTCATAGACTATACAGGGAATCTATAGAG------ATTAAAATTAGCGTGTGTGATTTT-------------------------------------------------------------------------------------------------------------------AAATATACTCACCTGACATAAACATAGAAGCACTTAGATAC-----ATTAAATAGGCGTTTAGATGTACTCTGGGCACTGGCTAGAGGCTGAGGGAGGAACAGGTAGAAATTCATTCC--CAAGAAGAAAGGGAGAAACA-----------------GCTTGAAAACCTCAG-----------------------------------------------CAAGTGA--------------------------------------------------------------------------TCTGCCTCTC-------------------------------------------------------ACCTTACCCCTCCTCTTGCAAGCTGCCCCAG-------------------------------------------------------------------------------------TACAAACACACAGAGCACAGG-AATTTCTCCCAGAC--------ACCCACAATAAAACTC----------TAAACGCGGCAGTGTAAAGTTAATCTCTTAT-AAAGAAACAGTCTAATG-AGGCAGATGCACA-GATGCC---CAGACATTATATGTTCAAAGCTTCATCGGCCTCC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163416564 1051 + 180432695 ----ACGTAATGGCTCGGTGCagctgtttttctcatgattatggTGAAGCCCGTTG---GGAGGATCAGAGGCAGGTTGTTGAAACATGTGGCACAGTCCtcggcacacagtaggcactcaggaAGT-GGTGGGTATTAcaattaccatttttattttcccctcctCAA--TTTTCAAGAGAAGAAACTGACTTCACAGCAGATGGCTACAAACTGATTTCTCCCTGAAAACCACA-AGCAGGTGAATCACCAACCACCTGGGAAAGATTCTGCCCTGGAAGGATT-AAGCAAATGAACCACAATTGTATT--------CCACTGGCATTTGGTGTAAATACAGGAGAA------GGACGCGGA-CATGAC----AGTTTCTCTTCCTGCAAGACTTTCTGGCCGGGTGTCAGAACTGGCTTTTTCTTTGCCTGCATT-TGAGCTGTCCATGCTTACGACTGTTGTTTGCATCTTTAAAATTGTCCTCCAAATTTTCCATTCGCATTCTACTTTGTCACTTTCCCACCCATTGCTGGAGCCATTTATTATTTGCCACGAGTCAGATGACCTGGGCAGCGCTCCAAGTCGTGCCTCAGACACCAGACCTAGCCCTAATCTCACTGGGCCTCCATCATctccattgttttaaaaaaaaaaaaaaaaaa----aaaaaaaagcttatgttTCACAGACTCTACAGGGAATCTATAGAG------ATTAAAATTAGCGTGTGTGATTTT-------------------------------------------------------------------------------------------------------------------AAATATACTCACCTGACATAAACATAGAAGCACTTAGATAC-----ATTAAATAGGTGTTTAGATGTAATCTGGGCACTGGctagaggctgagggaggaacaGGTAGAAATTCATTCc--caagaagaaagggagaaaca-----------------gCTTGAAAACCTCAG-----------------------------------------------CAGGTGA--------------------------------------------------------------------------TCTGCCTCTC-------------------------------------------------------ACCTTACCCCTCCTCTTGCAAGCTGCCCCAG-------------------------------------------------------------------------------------TACAAACACACAGAGCACAGG-AATTTCTCCCAGAC--------ACCCACAATAAAACTC----------TAAACGTGGCAGTGTAAAGCTAATCTCTCAT-AAAGAAACAATCTAATG-AGGCAGATGCACA-GATGCC---CAGACATTGTATGTTCAAAGCTTCATTGGCCTCC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110445436 1047 + 127223203 ----ACTTAATGGCTCGGTGCAGCTGTTTTTCTCATGATTATGGTGAAGTCCgttg---ggaggaccagaggcaggctgttgaaacatgtggcacagtccttggcacacagtaggcactcaggaatt-ggtgggtattaCAATTACCACTTTTATTTTCCCCTCCTCAA--TTTTCAAGAGAAGAAACTGACTTCACAGCAGATGGCTACAAACTGATTTCTCCCTGAAAACCACA-AGCAGGTGAATCACCAACCACCTGGGAAAGATTCTGCCCTGGAGGGATT-AAGCAAATGAACCACAATTGTATC--------CCACTGGCATTTGGTGTAAATACAGGAGAA------GGACGCCGA-CATGAC----AGTTTCTCTTCCTGCGAGACTTTCTGGCCGGGTATCAGAACTGGCTTTTTCTTTGCCTGCATT-TGAGCTGTCCATGCTTACGACTGTTCTTTGCATC-TTAAAACGGTCCTCCAAATTTTCCATTCGCATTCTACTTTGTCACTTTCCCACCCATTGCTGGAGCCATTTATTATTTGCCACGAATCAGATGACCTGGGCAGCGCTCCAAGTCATGCCTCAGACACCAGACCTAGCCCTAATCTCACTGGGCCCCCATCATCTCCATTGTTTA------------AAAAAATAATAAATAAATGCTTATGTTTCATAGACTATACAGGGAATCTACAGAG------ATTAAAATTAGCATGTGTGATTTT-------------------------------------------------------------------------------------------------------------------AAATATACTCACCTGATATAAACATAGATGCGCTTAGATACACTAAATTAAATAGGTGTTTAGATGTAATCTGGGCACTGGCTAGAGGCTGAGGGAGGAACAGGTAGAAATTCATTCC--CAAGAAGAAAGGGAGAAATA-----------------GCTTGAAAACCTCAG-----------------------------------------------CAGGTGA--------------------------------------------------------------------------TCTGCCTCTC-------------------------------------------------------ACCTTACCCCTCCTCTTGCAAGCTGCCCCAG-------------------------------------------------------------------------------------TACAAACACACAGAGCACAGG-AATTTCTCCCAGAC--------ACCCACAATAAAACTC----------TAAACGCGGCAGTGTAAAGTTAATCTCTTAT-AAAGAAACAGTCTAATG-AGGCAGATGCACA-GATGCC---CAGACATTGTATGTTCAAAGCTTCATCGGCCTCC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23792328 1033 - 128169293 ----ACTTAATGGCTCTCTGCACCTGTTTTTCTCACGATTATGGTGAAGCCTGTTG---GGAGGATCAGAGGCAGCTGGTTGAAACACGTGGCCCAGTCCTTAGCACATAGCTGGCACTCAGGAGGT-GGTGGGTATTACAGTTACCATTCTTATATTCCCCTCCTCAA--TTTT-----AGAGAAACTGACTTTATAGCAGATGGCCACAAACTGACTTCTCCCTGAAAATCACA-AGGAGGTGAGTAACCAACAGCCTGGCAAACATTCTTCCAGGGTGGGATTAAAGCAAATTAATCACAATTGTATT--------CCATCGGCATCTGGTGGAAATACAGGGGAA------GGATGGTGA-CGTGAA--AGAGTTTCTCCTCCTGTGAGACTTCCTTGCTGGATATCAGAATTGGCTTTGTCTTTGCATGCATT-TGAGCTGTCCATTCTTAGGATTGCTCCTCGCATC-TTAAAATTGTCCTCCAAATTTTCCATTTACATTCTACTTCGTCACTTTCCCACCCATTGCTGGAGCCATTTATTATTTGCCACGAGTCAGATGACCTGGGCAGTGCTCCAAGTTGTGCCTCAGACGCCAGACCTAGCCCTAATCTAACTGGGCATCCATCATCTCTATTGTTTA------------AAAAAA----A------TGCTTATATTTCATGTACCAAACAGGGAATCTACAGAG------ATTAAAATTAGTGTG---ATTTTT-------------------------------------------------------------------------------------------------------------------AAATACACCCATTTGACATAAACATAGAAGCACTTAGATACACTAAATGAAATAGGTTTTTAGATGTAATTTTAGCACTGGCTAGAGGAGGAGGGAAGCACAGGTAGAAATTCATTCC--CAAGAAGAAAAGGAGAAACA-----------------TCTTGAAAACCTCAG-----------------------------------------------CAGGTGA--------------------------------------------------------------------------TCTGCCTCTC-------------------------------------------------------ACCCCACCCCTCTTCTTGCAAGCTGCCCCAG-------------------------------------------------------------------------------------TACAAACA----GAGCACAGG-AATTTCTCCCAGACAGAAATTTATCCACAATAAAACTC----------TAAATGCAGCAGTGTAAAGTGAGTATC--AT-AAAGAAACAGTC-AATG-AGGCAGATGCACA-GATGTC---CAGACATTGTATGTCCAAAGCTTCATCGGCCTCC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40431156 1145 + 149736546 ----ACTTCACAGCCCCACACATTTGCTTTTCTC-------TCGTGTAAACTGTTG---CAGGGGCCAGAGGCATGCTCCTAAACACCATGGTACAGGTCCTGAGACCCCAGAAGCACACAGTAAGTGGGTAGGCATTAAAACCACCACCCTTACTTTCCTCTTTGTAGATTTTTCAAGAGAAGAAACTAAATTCCCAACAGATGGCCACATAC----TTGCAGCTTGAAACCACAGAGCAGGTGAATCACCAGCGGCCCAGGAAAGATTCAGCCAGTGTGGCATT-AATCAA--TAACCACAATTGTGTTCTAATCAGCCACTGACAGGTGATGCAAA-ACACCGAAA------GGACAGCGAGTGTGAA----------CCCTCCT--GGGACTTCCCTCTTACCTATCAGAACTGGTTTTCCCTTT-CCTGCTCTGTGAGCTGGTGACTCTCAGGGCGACTGTCTATTTC---------------CAGAGTTTCCATTGGCTTTCCACT--GTCAA-GCCCCTCCCATTTCTGAA-----------------AGGAGTCAGATGGGCTGGGCAGCACTCCAAGTTATG-ATTGGGTGCCAGACCTAGCCCTAATCTCATTATACC-------TTTCCACCTGCTC-----------------------------TGCTTGTATTTCCATGAC-AGACAGGGAGTCTATAAGGTTTAGAATGAAAACTGGTATGAGTGATTTTTTTAAATTAATTTAtttattatttttgagataggttgcaatgcagcccagcatagccttgaattctaggattgtcatgcatgggccACACCTGGCTGCTATGTGTGACTGATTGCAAATATTCCCATTTGACAGATGCAT-----CATTCACACA------GGTGAAGAGATATTTGCA--TAATGTGGGTAAGAGCTACAGGTGGCAAGA-GAACAGGT---GATTCA---A--CAGTAGCCTGGAAAGAAACA-----------------TCTGGAAAACCCCAC-----------------------------------------------CAGGTGA--------------------------------------------------------------------------TGCTCTT--------------------------------------------------------------------TCCCCTTCTGAGCAACCCCAGacacacagacacacacagacacacacacacagacacacagacacacacacatacacagacacacacacacacacacacacacacacacacacacacaGAGCTCAGGAAAATGCCCACAAAT--------GCCCACAAAATAAC-------------------AGCTGCCTAAAGTAACTCTC--AT-AAAGAGAAGGTCTAAAGTAGGCAGATTCACAGGATGCCAGGCAGGAATTG-AGGGGTAAAACTTCATCGGCATCT
i mm10.chr6                I 56 C 0
s canFam3.chr16             52115123 1115 -  59632846 GTGCAGGTGACTG--CAGGGTATCCGCTGTGCTCACCGGTACAGTGATGAGAGGGGGATGAAGGATCAGAGGCCAGCTCCCC----------CACAG---CGGGCACCCCGTAACCACCCCGTAACC--GTGGGGGTGCC---TCCCACCTCTGCCTCACTC-GCTGAG-----TGAGGTGAAGGAAGGGAACCCACAGCAGGTGGCCCCAAACTGGCTTCTCCCTGGAAGCCGCA-AGCAGGTGAATCCCCAGC-ACCCAGGGAAGACTCTGCCCACGTGGGATT-AATGAAATTAACCGCACTCGTGCT--------TCCCCGCCCTCTgagggaccttccaagggaccttccgagggaGGA-TGTGGCCCCCAGGCCATCATTCTG-AGGACCTCCTGGCTGACCGACAGGCC--ACCCTCTCTTTGCCC---TT-GGAGCTGCCCATTCTTAGGACTGCTCTTTGCATC-TCAAAATGATGTTCCAGATCTTCCATTCTCATTCC-----------------------------------------------------------------------------------------------CCCCAGCCCGAATCCCGCTGTGCCCGCCTCGTCTCCACCGCGTA------------AAAGAA----AA-----TGCTGGTGTCGTGTGGACTTTATGGAGACTGCACGGAG------GTTAAGGTTAGTGTG----ATCTC-------------------------------------------------------------------------------------------------------------------AAACACACTCACCTGATACAAACTGAGGAGCATGTAGAGG----AAATGAAACAGGTGTTCAGGGGCAATTTGGGCCGTGGCTA---GTTGAGGGAGGAAGAGGCAGTAATTCATCTCATCAAGAACAATAGGAAGAACGATAGGAAAAGAGCTTATCTTTCAAAACCTCAGCTCTgggacgcctgggtggctcagtggttgagcgtctgccttcagctcaggtcatgatcatggggtcctgggatcgagtcccgcatcgggctccctgcagggagcctgcttctccctccgcctaggtctctgcctctctctgtgtgtctcattaataaataaataaacaaaatcttaaaaaaaaaAAAAAAAAACCTCAGCCCTCCTCCCCTCAACC-CTCCAG-------------------------------------------------------------------------------------GGCAAACACACAATGGATAGG-AATTCCCCCCAAGT--------CCCCACGAAATAACTCGGTGAGGGGGTGGACACAGCATTTTAAAGTGAATCTCTTATAAAAGAAACAGTCCAGTG-------ATTCACT-GGCGT----CAGACACCG--GGTCCAAAGCCTCCTCTGCCACA
i canFam3.chr16            C 0 C 0

a score=112395.000000
s hg38.chr7_GL383534v2_alt     64763  63 +    119183 ATCCTGCCCACACACAAG------------------------------------------------------------------------TCCTCAGCCACACGGTGATACCGCTCTTGCCACCATCTGGGGGCA
s panTro4.chr7             143164758  63 + 161824586 ATCCTGCCCACACACAAG------------------------------------------------------------------------TCCTCAGCCACACGGTGATACCGCTCTTGCCACCATCTGGGGGCA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138985902  63 + 157549271 ATCCTGCCCACACACAAG------------------------------------------------------------------------TCCTCAGCCACACGGTGATACCACTCTTGCCACCATCTGGGGGCA
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181000530  63 + 198365852 ATCCTGCCCACACACACG------------------------------------------------------------------------TCCTCAGCCACACGGTGAAACCGCTCTCGCCACCATCTGGGGGCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174746445  63 + 192294377 ATCCTGCCCACACACACG------------------------------------------------------------------------TCCTCAGCCACACGGTGAAACCGCTCTCGCCACCATCTGGGGGCA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163417615  58 + 180432695 ATCCTGCCCACACACACG------------------------------------------------------------------------TCCTCAGCCACACGGTGAAACCAC-----CACCCATCTGGGGGCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110446483  63 + 127223203 ATCCTGCCCACACACACG------------------------------------------------------------------------TCCTCAGCCACACGGTGAAACCGCTCTTGCCACCATCTGGGGGCA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23793361  62 - 128169293 ATCCTGCCTATACACAAG------------------------------------------------------------------------TCCTCAGTCACACAGTGATATCACTCTTGCCACCATCGGGGGG-A
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40432301  28 + 149736546 ------------------------------------------------------------------------------------------------ATTACTCTGGGGTGACAGCCCTGCCAGC-----------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52116238 131 -  59632846 ----GGCCCACACACAAGCAGGCAGAAAAAAGTAGGAAAATTTTACTAAAAATTCAACAAAATTAAAAATTAAAAATCGGGGCTTgggaaccctgggtggcacagcggtttggcgcctgcctttggcccagggcg
i canFam3.chr16            C 0 I 131
e nomLeu3.chr13             93108425  73 + 110113093 I

a score=24619.000000
s hg38.chr7_GL383534v2_alt     64826 10 +    119183 GGGGTGCTCC
s panTro4.chr7             143164821 10 + 161824586 GGGGTGTTCC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138985965 10 + 157549271 GGGACGTTCC
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181000593 10 + 198365852 GGGGTGTTCC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174746508 10 + 192294377 GGGGTGTTCC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163417673 10 + 180432695 GGGGTGTTCC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110446546 10 + 127223203 GGGGTGTTCC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23793423 10 - 128169293 GGGGTGTTCC
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40432329  0 + 149736546 C
e canFam3.chr16             52116369 131 -  59632846 I
e nomLeu3.chr13             93108425 73 + 110113093 I

a score=206620.000000
s hg38.chr7_GL383534v2_alt     64836 73 +    119183 CCAAGTGTGACAATATCCTCTCCTTTAATTAAGCAGA-CTAAGAACATTTTACTAGAAGCCCAAATAAT-GAAGT
s panTro4.chr7             143164831 69 + 161824586 CCAAGTGTGACAATATCCTCTCCTTTAA----GCAGA-CTAAGAACATTTTACTAGAAGCCCAAATAAT-GAAGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138985975 73 + 157549271 CCAAGTGTGACGATATCCTCTCCTTTAATTAAGCAGA-CTAAGAACATTTTACTAGAAGCCCAAATAAT-GAAGT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93108498 73 + 110113093 CCAAGTGTGACGATATCCTATCCTTTAATTAAGCTGA-CTAAGAACATTTTACTAGAAGCCCAAATAAC-GAAGC
i nomLeu3.chr13            I 73 C 0
s rheMac3.chr3             181000603 74 + 198365852 CCAAGTGTGACAATATCCTTTCCTTTAATCAAGCAGA-CTAAGAAAATGTTACTAGAAACCCAAATAACAAAAGT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174746518 74 + 192294377 CCAAGTGTGACAATATCCTTTCCTTTAATCAAGCAGA-CTAAGAAAATGTTACTAGAAACCCAAATAACAAAAGT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163417683 74 + 180432695 CCAAGTGTGACAATATCCTTTCCTTTAATCAAGCAGA-CTAAGAAAACGTTACTAGAAACCcaaataacaaaagt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110446556 74 + 127223203 CCAAGTGTGACAATATCCTTTCCTTTAATCAAGCAGA-CTAAGAAAATGTTACTAGAAACCCAAATAACAAAAGT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23793433 70 - 128169293 CCAAGTGTGACAATATCCTTTCCTTTAA----GCAGA-CTAGGAAAACCGTATCAGAAACCCAAATAACAAAAGT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40432329 66 + 149736546 CCAAGTGTGAGCATACCTTTCTC---AAAGAAGCAGAGAAAAGGAAATTTTACTAGAAAGTCTAAGAAC------
i mm10.chr6                C 0 C 0
e canFam3.chr16             52116369 131 -  59632846 I

a score=1414064.000000
s hg38.chr7_GL383534v2_alt     64909 407 +    119183 AAAATTAAAATCAAGGCTCTAAATCATGGGGTTGAACAAAATGAAACAGCAATATTCTGGCTTCCAACATCTTCCACCCAGCTTGCAGAGTTAGCATCT-GGGTCTGGTTTCAATAGCAGCTTTGTGGCCCAGATGATCAGCACCACCATCCTA-GGGC----CCCCTGCTCCAGATGAGGACTGAGTGTA-------TGTG--------------------------TAAGCCTCACT----TTGAACCTGAAGC-------------------CCCTAGTTCTTAAGTCACCTGTA----GACTCAGCAACCATAATTTTCAATCCATGAGTCTGA----TGGAAAT---AAGCTTTAAGAC---TCT------TTC---TCTGATTCTTCCCACAGATGGCCAGCCTAGCTTTCCAAAACTTGTATCTAAAAGTGCAAAAGGATTACTCT--TAT--------------------------------------------TTCCACACC-------------------TTAG-----------AGAATCACTGCAT-------------------------------------------------ATATTCCTGC
s panTro4.chr7             143164900 407 + 161824586 AAAATTAAAATCAAGGCTCTAAATCATGGGGTTGAACAAAATGAAACAGCAATATTCTGGCTTCCAACATCTTCCACCCAGCTTGCAGAGTTAGCATCT-GGGTCTGGTTTCAATAGCAGCTTTGTGGCCCAGATGATCAGCACCACCATCCTA-GGGC----CCCCTGCTCCAGATAAGGACTGAGTGTA-------TGTG--------------------------TAAGCCTCACT----TTGAACCTGAAGC-------------------CCCTAGTTCTTAAGTCACCTGTA----GACTCAGCAACCATAATTTTCAATCCATGAGTCTGA----TGGAAAT---AAGCTTTAAGAC---TCT------TTC---TCTGATTCTTCCCACAGATGGCCAGCCTAGCTTTCCAAAACTTGTATCTAAAAGTGCAAAAGGATTACTCT--TAT--------------------------------------------TTCCACACC-------------------TTAG-----------AGAATCACTGCAT-------------------------------------------------ATATTCCTGC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138986048 407 + 157549271 AAAATTAAAATCAAGGCTCTAAATCATGGGGTTGAACAAAATGAAACAGCAATATTCTGGCTTCCAACATCTTCCACCCAGCTTGCAGAGTTAGCATCC-GGGTCTGGTTTCAATAGCAGCTTTGTGGCCCAGATGATCATCACCACCATCCTA-GGGC----CCCCAGCTCCAGATGAGGACTGAGTGTA-------TGTG--------------------------TAAGCCTCACT----TTGAAACTGAAGC-------------------TCCTAGTTCTTAAGTCATCTGTA----GACTCAACAACCATAATTTTCAATCCATGAGTCTGA----TGGAAAT---AAGCTTTAAGAC---TCT------TTC---TCTGATTCTTCCCACAGATGGCCAGCCTAGCTTTCCAAAACTTGTATCTAAAAGTGCAAAAGGATTACTCT--TAT--------------------------------------------TTCCACATC-------------------TTAG-----------AGAATCACTGCAT-------------------------------------------------ATATTCCTGC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93108571 408 + 110113093 AAAATTAAAATCAAGGCTCTAAATCATGGGGTTGAACAAAATGAAATAGCAATATTCTGGCTTCCAACATCTTCCACCCAGCTTGCAGAGTTAGCATCCGGGGTCTGGTTTCAATAGCAGCTTTGTGGCCCAGATGATCAGCACCACCATCCTA-GGGC----CCCCTGCTCCAGATGAGGACTGAGTGTA-------TGTG--------------------------TAAGCCTCACT----TTGAACCTGAAGC-------------------CCCTAGTTCTTAAGTCATCTGTA----GACTCAACAACCATAATTTTCAATCCATGAGTCTGA----TGGAAAT---AAGCTTTAAGAC---TCT------TTC---TCTGATTCTTCCCACAGATGGCCAGCCTAGCTTTCCAAAACTTGTATCTAAAAGTGCAAAAGGATTACTCT--TAT--------------------------------------------TTCCACACC-------------------TTAG-----------AGAATCACTGCAT-------------------------------------------------ATATTCCTGC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181000677 408 + 198365852 AAAATTAAAATCAAGGCTCTAAATCATGGGGTTGAACAAAATGAAAAAGCAATATTCTGGCTTCCAGCATCTTCCACCCAGCTTGCAGAGTTAGCATCT-GGGTCTGGTTTCAATAGCCGCTTTGTGGCCCAGATGATCAGCACCACCATCCGA-GGGC----CCCCTGCTCCAGATAAGGACTGAGTGTA-------CACG--------------------------TAAGCCTCGCT----TTGAACCTGAAGC-------------------CCCT-GTTCTTAAGTCACTTGTA----GACTCAACAACCATAATTTTCAATCCATGAATCTGA----TGGAAAT---AAGCTTTAAG-----ACT------TTC---TCTGATTCTTCCCACAGATGGCCAGCCCAGCTTTCCAAAACTTGTATCTAAAAGTGCAAAAGGATTACTTT--CAT--------------------------------------------TTCCACACCTC---------------AGTCAG-----------AGAATCACTGCAT-------------------------------------------------ATATTCCCGC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174746592 408 + 192294377 AAAATTAAAATCAAGGCTCTAAATCATGGGGTTGAACAAAATGAAAAAGCAATATTCTGGCTTCCAGCATCTTCCACCCAGCTTGCAGAGTTAGCATCT-GGGTCTGGTTTCAATAGCCGCTTTGTGGCCCGGATGATCAGCACCACCATCCGA-GGGC----CCCCTGCTCCAGATAAGGACTGAGTGTA-------CGCG--------------------------TAAGCCTCGCT----TTGAACCTGAAGC-------------------CCCT-GTTCTTAAGTCACTTGTA----GACTCAACAACCATAATTTTCAATCCATGAATCTGA----TGGAAAT---AAGCTTTAAG-----ACT------TTC---TCTGATTCTTCCCACAGATGGCCAGCCCAGCTTTCCAAAACTTGTATCTAAAAGTGCAAAAGGATTACTTT--CAT--------------------------------------------TTCCACACCTC---------------AGTCAG-----------AGAATCACTGCAT-------------------------------------------------ATATTCCCGC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163417757 412 + 180432695 aaaattaaaatcaaggCTCTAAATCATGGggttgaacaaaatgaaaaagcaatattCTGGCTTCCACCATCTTCCACCCAGCTTGCAGAGTTAGCATCT-GGGTCTGATTTCAATAGCCGCTTTGTGGCCCAGATGATCAGCACCACCATCCGA-GGGC----CCCCTGCTCCAGATAAGGACTGAGTGTA-------CGCG--------------------------TAAGCCTCGCT----TTGAACCTGAAGC-------------------CCCT-GTTCTTAAGTCACTTGTA----GACTCAACAACCATAATTTTCAATCCATGAATCTGA----TGCAAAT---AAGCTTTAAGACTA-ACT------TTC---TCTGATTCTTCCCACAGATGGCCAGCCCAGCTTTCCAAAACTTGTATCTAAAAGTGCAAAAGGATTACTTT--TAT--------------------------------------------TTCCACACCTC---------------AGTCAG-----------AGAATCACTGCAT-------------------------------------------------ATATTCCCGC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110446630 412 + 127223203 AAAATTAAAATCAAGGCTCTAAATCATGGGGTTGAACAAAATGAAAAAGCAATATTCTGGCTTCCAACATCTTCCACCCAGCTTGCAGAGTTAGCATCT-GGGTCTGGTTTCAACAGCCGCTTTGTGGCCCAGATGATCAGCACCACCATCCGA-GGGC----CCCCTGCTCCAGATAAGGACTGAGTGTA-------CGTG--------------------------GAAGCCTCGCT----TTGAACCTGAAGC-------------------CCCT-GTTCTTAAGTCACTTGTA----GACTCAACAACCATAATTTTCAATCCATGAATCTGA----TGGAAAT---AAGCTTTAAGACTA-ACT------TTC---TCTGATTCTTCCCACAGATGGCCTGCCCAGCTTTCCAAAACTTGTATCTAAAAGTGCAAAAGGATTACTCT--TAT--------------------------------------------TTCCACACCTC---------------AGTCAG-----------AGAATCACTGCAT-------------------------------------------------ATATTCCTGC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23793503 422 - 128169293 GAAATTAAAGTCAAAGCTCTAAATCATGAGGATGAACAAAATGAAA--------------CTGCCAACATCTTCCACCCAGCTTGCAGAG-TAGCATCT-GGCGCTGGTTTCAATAGCAGCTTTGTGGCCCAGATGATCAGCACCACCATCCTA-GGGC----TCCCTGCTCCAGATAAAGACTGAGTGTATCCTCACTTTA--------------------------CAAGCCTCACT----TTGAACCTGAAGCCTCACTTTGAACTTGAAGACCCTAGTTCTTAAGTCATTTGT------ACTCAGCAACCATAATTTTCAATTCATGAGTCTGA----TGGAAAT---AAGCTTTAAGAC---TCT------TTC---TCTGATTCTTCCCACAGATGCCCAACCCAGCTTTCCAAAACTTGTATCTAAAGGTGCAAAAGGATTACTCTCGTAT--------------------------------------------TCCCACACCTT---------------AGTCAG-----------AGAATCACtgcat-------------------------------------------------acatgcttac
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40432395 572 + 149736546 AGATTTAAAGTCGGGTCT-GAAATCATAGAA-CACACACACAGAGCGAGCAATATTCTGGCTGCCAACCTCTTCTACCCAGCGTGCCAACTTAGCATCT-GTGACTGGTTTCAATAGCAGCTTTGTAGCCCAGATGGCCAGCACCACCACCCTA-CAGCTAGTTCTCGGCTCCAGATAGAGACTCtgtgtg-------tgtgtgtgtgtgtgtgtgtgtgtatttgcatgtgCCTTACC----TTGAACCTGACGC-------------------CCTTGATCTTCCTGCCATTTGTACGCCAACCAACCAACCATAACTTTCCAGCAATAAGTCAGGAATCCAGAGAA---AACTATCACGTCTGTCCT------TTCCTGTCTGATTTTTCAGACAGATGCCCCCAAAAGCTTCCCAACACGTATGTTTAAAAGTGTGAACGAATTTCTCT--CCTCCTTCCCGCCCTAAAACAGGAACTCACATTGTCCCAGGGATCCGCTCCACTCTCCTATTCCTTCtgtgatggttaattttgtctcttagcatcactggatttccagtcatctaagaaacacagccctgggggtgggggtgtctttcggggtgttcctgc
i mm10.chr6                C 0 I 128
s canFam3.chr16             52116500 414 -  59632846 aaaaaaaaAATCGGGGCT-TGACTCAT-GGGCTAAACACAATGAAAAAACAAGATTCTGGCTGCCAACCTCTCCCACCTGGCCTTCGGAGTTAGCATCT-GGGCCTGGTTTCAATAGCAGCTTTGTAGCCCAGATGGCCAGCACCGCCACTCTAGGGGC----TCCCTGCTCCAGGGAGACACTGCACGAG-------GACA--------------------------GAGCCTCTGCTCCACTTGAACCCCAAGT-------------------CCCTAGTCCGCACGTCATTTGTG----GATCTGACCAGCATATTCTTCAGGCCGTGAATCCAA----AGCAAATCCCATTCTTCACACC---TCTCCCCTCTTC---TCCGATTCTTCCTATAGATGCCCAAC--------CGAAAACTTGTCTCCAGAAGCAGAAAAGGACT-CGTT--CCC--------------------------------------------TGCCAGACACC---------------AGTCTG-----------CAAATCGCTGAGC-------------------------------------------------CTTCTCCTGC
i canFam3.chr16            I 131 C 0

a score=161755.000000
s hg38.chr7_GL383534v2_alt     65316  78 +    119183 Tcaa------------------------acacacacacacacac--------------------------CCTTTCTAACAAGGATCCA--CCCCT-CCTTTTCCCTCTTAC--TCT------ACTACCTAATGAATGT---------
s panTro4.chr7             143165307  78 + 161824586 TCAA------------------------ACACACACACACACAC--------------------------CCTTTCTAACAAGGATCCA--CCCCT-CCTTTTCCCTCTTAC--TCT------ACTTCCTAATGAATGT---------
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138986455  76 + 157549271 TCAA--------------------------ACACACACACACCC--------------------------CCTTTCTAACAAGGATCCA--CCCCT-CCTTTTCCCTCTTAC--TCT------ACTTCCTAATGAATGT---------
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93108979  78 + 110113093 TCAA------------------------ACACATACACACACAC--------------------------CCTTTCTAACAAGAATCCG--CCCGT-CCTTTTCCCTCTTAC--TCT------ACTTCCTAACGAATGT---------
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181001085  73 + 198365852 TCAA--------------------------ACGCACACACACAC--------------------------CCCTTCTAACAAGGATCCA--CCTCT-CCTTTTCCTTTTTAC--TCT------GCTTCCTA---AATGT---------
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174747000  73 + 192294377 TCAA--------------------------ACGCACACACACAC--------------------------CCCTTCTAACAAGGATCCA--CCTCT-CCTTTTCCTTCTTAC--TCT------GCTTCCTA---AATGT---------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163418169  73 + 180432695 tcaa--------------------------acgcacacacacac--------------------------cccttctaACAAGGATCca--cctct-ccttttccttcttac--tCT------GCTTCCTA---AATGT---------
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110447042  72 + 127223203 TCAA--------------------------ACGCACACACACAC--------------------------CCCTTCTAACAAGGATCCA--CCTCT-CCTTTTCCTTCTTAC--TCT------ACTTCCT----AATGT---------
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23793925  86 - 128169293 tcacataca------------------tacatatacacacacaC--------------------------CCCTTCTAACAAGAATCCACTCCTCT-CCTTTTCCCTCTTACATGCT------ACCCTCTTA--CATGT---------
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40433095 110 + 149736546 tcat--------------------------gctctcatcagcacgtcttccctgtcacgtctgactgaatctcctcaaaccacaagccaaaccctt-ccttctgtgagttgc--tcttgtcagacaGACAGACAGACAA---------
i mm10.chr6                I 128 C 0
s canFam3.chr16             52116914 103 -  59632846 -------CAGAGGTGCGTCTACCTGTGCGCACACCTGCCCACAC--------------------------ACACCCTGACAAGGACCCA--CTCCTCCCTTCTACCTTTTTT--Ttt------tttttttaa--gattttatttattt
i canFam3.chr16            C 0 I 131

a score=81749.000000
s hg38.chr7_GL383534v2_alt     65394 21 +    119183 ---ACAGCTATGAATtctcttctt
s panTro4.chr7             143165385 21 + 161824586 ---ACAGCTATGAATTCTCTTCTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138986531 21 + 157549271 ---ACAGCTATGAATTCTCTTCTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93109057 24 + 110113093 ACCACAGCTATGAATtctcttctc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181001158 24 + 198365852 ACCACGGCTATGAATtctcttctc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174747073 24 + 192294377 ACCACGGCTATGAATtctcttctc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163418242 24 + 180432695 ACCACGGCTATGaattctcttctc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110447114 24 + 127223203 ACCACAGCTATGAATtctcttctc
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23794011 24 - 128169293 ACCACAGCTGTGAACTCTCTCCTC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40433205 24 + 149736546 GCCACAGCTATGGGTTCTCTCCTC
i mm10.chr6                C 0 C 0
e canFam3.chr16             52117017 131 -  59632846 I

a score=21860.000000
s hg38.chr7_GL383534v2_alt     65415 6 +    119183 cctctt
s panTro4.chr7             143165406 6 + 161824586 CCTCTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138986552 6 + 157549271 CCTCTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93109081 6 + 110113093 cctctt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181001182 6 + 198365852 cctctt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174747097 6 + 192294377 cctctt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163418266 6 + 180432695 cctctt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110447138 6 + 127223203 cctctt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23794035 6 - 128169293 CCTCAA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40433229 6 + 149736546 CCATTC
i mm10.chr6                C 0 I 29
s canFam3.chr16             52117148 6 -  59632846 CCTCTC
i canFam3.chr16            I 131 C 0

a score=43318.000000
s hg38.chr7_GL383534v2_alt     65421 21 +    119183 tcactct---ccctctctctcAGG
s panTro4.chr7             143165412 21 + 161824586 TCACTCT---CCCTCTCTCTCATG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138986558 19 + 157549271 TTACACT-----CTCCCTCTCATG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93109087 24 + 110113093 tcacactctcccttctctctcATG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181001188 23 + 198365852 tcactct-ctccctctctctAATG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174747103 23 + 192294377 tcactct-ctccctctctctAATG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163418272 23 + 180432695 tcactct-ctccctctctctaatG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110447144 23 + 127223203 tcactct-ctccctctctctcATG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23794041 21 - 128169293 TGACGCT---CTCCCTCTCTCATG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52117154 16 -  59632846 TTACATC---CCCTCTCTC-----
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40433235 29 + 149736546 I

a score=2473586.000000
s hg38.chr7_GL383534v2_alt     65442 846 +    119183 CACACA--------------CACTGA-------------------------------------------------TTTGGACACATGCCAACAGTTACCCACATTACATGGGAAGATGCACATAAT-GCCATGGCCTGGGCAGTAAGTGAtggggg---tggcg-gagggttgaggtgggtgtggggtgggggGAGGAAGGATCTCCTAGGAGTGGAAACTGAGGACACAGG-TGGGAGAGACATGGGGAAGTGGCTAAGCAGGC--AGGCCAGCGAGAGAAACTAAACAGCAGACAAA----TCACACCTATGTAAGAACTTCTAAAATATGCTCTAATTTTGGTAAAGAAGTCAATATTCACTTTATCGCTTTTGGCAACACAGGCGAAGGAGGGGCAAAAGTCTG---GGTGGGC--------------------------------------------------------CAATATTAAATAGGAACAAATAGCAGATCTGCCTCAG--CAGTAAA-------------------GGGGGGAAGATG--------------------CTGGGC-CAGT-----GATGG-TCCAGCTCACTGTGCCACTATGGGC------CTCA---------CTCCACCGG--------A--------------ACCATCACACA-AGGG----GTACATCAGGCACTCTCTGAGGGCCCTGTCCTAGTGCTAA-CCTTGAGGCCCTCAGAAGCTCAGTAGCATTCATTCACTACATCTCCTA-CTTTTAAGATATATA-TAAAATAAAATTATATGGTACAAGGTCTATCAGAGTATTTTT-------ACAGGAAGCAAAGTGCCATTTAG--GACTAGGATAGATGACAAAAGAGACAAACACATTTATGGTCAGTAAAGGACTGCTTTCC---CCCCAC-----AAAAAAACACAAAAAAAACAC-AA------GTTACAA-GTGctccctctcaca------------ctg---cgctctctctt-cctccctcctttctcctccat-ccCTGGATA-AGTAAGGATCAG---GTGCCAGGGAGCAGGGGTTCAGGCAGCATAGTATACTAGAAAGACAA
s panTro4.chr7             143165433 847 + 161824586 CACACA--------------CACTGA-------------------------------------------------TTTGGACACATGCCAACAGTTACCCACATTACATGGGAAGATGCACATAAT-GCCATGGCCTGGGCAGTAAGTGATGGGGG---TGGCG-GAGGGTTGAGGTGGGTGTGGGGTGGGGGGAGGAAGGATCTCCTAGGAGTGGAAACTGAGGACACAGG-TGGGAGAGACATGGGAAAGTGGCTAAGCAGGC--AGGCCAGCGAGAGAAACTAAACAGCAGACAAA----TCACACCTATGTAAGAACTTCTAAAATATGCTCTAATTTTGGTAAAGAAGTCAATATTCACTTTACCGCTTTTGGCAACACAGGCGAAGGAGGGGCAAAAGTCTG---GGTGGGC--------------------------------------------------------CAATATTAAATAGGAACAAATAGCAGATCTGCCTCAG--CAGTAAA-------------------AGGGGGAAGATG--------------------CTGGGC-CAGT-----GATGCCTCCAGCTCACTGTGCCACTATGGGC------CTCA---------CTCCACCAG--------A--------------ACCATCACACA-AGGG----GTACATCAGGCACTCTCTGAGGGCCCTGTCCTAGTGCTAA-CCTTGAGGCCCTCAGAAGCTCAGTAGCATTCATTCACTACATCTCCTA-CTTTTAAGatatata-taaaataaaattatatGGTACAAGGTCTATCAGAGTATTTTT-------ACAGGAAGCAAAGTGCCATTTAG--GACTAGGATAGATGACAAAAGAGACAAACACATTTATGGTCAGTAAAGGACTGCTTTCC---CCCCAC-----AAAAAAACACACAAAAAACAC-AA------GTTACAA-GTGCTCCCTCTCACA------------CTG---CGCTCTCTCTT-CCTCCCTCCTTTCTCCTCCAT-CCCTGGATA-AGTAAGGATCAG---ATGCCAGGGAGCAGGGGTTCAGGCAGCATAGTATACTAGAAAGACAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138986577 852 + 157549271 CACACA--------------CACTGA-------------------------------------------------TTTGGACACATGCCAACAGTTACCCACATTACATGGGAAGATGCACATAAT-GCCATGGCCTGGGCAGTAAGTGAT-GGGG---TGGCG-GAGGGTTGAGGTGGGTGTGGGGTGGGGGGAGGAAGGATCTCCTAGGAGTGGAAACTGAGGACACAGG-TGGGAGAGACATGGGGAAGTGGCTAAACAGGC--AGGCCAGTGAGAGAAACTAAACAGCAGACAAA----TCACACCTATGTAAGAACTTCTAAAATATGCTCTAATTTTGGTAAAGAAGTCAATATTCACTTTACCGCTTTTGGCAACACAGGCGAAGGTGGGGCAAAAGTCTG---GGTGGGT--------------------------------------------------------CAATACTAAATAGGAACAAATAGCAGATCTGCCTCAG--CAGTAAA-------------------GGGGGGAAGATG--------------------CTAGGC-CAGT-----GATGCTTCCAGCTCACTGTACCACTATGGGC------CTCA---------CGCCACCGG--------A--------------ACCATCACACA-AGGG----GTACATCAGGCACTCTCTGAGGGCCCTGTCCTAGTGCTAA-CCTTGAGGCCCTCAGAAGCTCAGTAGCATTCATTCACTACATCTCCTA-CTTTTAAGatatata-taaaataaaattatatGGTACAAGGTCTATCAGAGTATTTTT-------ACAGGATGCAAAGTGCCATTTAG--GACTAGGATAGATGACAAAAGAGACAAACACATTTATGGTCAGTAAAGGACTGCTTTCC---CCCCACCaaaaaaaaaaaaaaaaaaaaaaCACAAA------GTTACAA-GTGCTCCCTCTCACA------------CTG---CGCTCTCTCTT-CCTCCCTCCTTCCTCCTCCAT-CCCTGGATA-AGTAAGGATCAG---ATGCCAGGGAGCAGGGGTTCAggcagcatagtatactagaaagacaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93109111 819 + 110113093 ----CA--------------CACTGA-------------------------------------------------TTTGGACACATGCCAACAGTTACTCACATTACGTGGGAAGATGCACAAAAT-GCCATGGCCTGGGCAGTAAGTGAT-gggg---tgggg-gtgggttgaggtgggtgtggggtgggggGAGGAAGGATCTCCTAGGAGTGGAAACCGAGGACACAGG-TGGGAGAGACATGGGGAAGTGGCTAAGCAGGC--AGGCCAGCGAGAGAAACTAAACAGCAGACAAA----TCACACTTATGTAAGAACTTCTACAGTATGCTCTAATTTTGGTAAATAAGTCAATAGTCACTTTACCGCTTTTGGCAACACAGGTGAAGGAGGGGCAAAAGTCTG---GGTGGGC--------------------------------------------------------CAATATTAAATAGTAACAAATAGCGGATCTGCCTCGG--CAATAAA-------------------GAGGGGAAAATG--------------------CTGGGC-CAGT-----GATGCCTCCAGCTCACTGTGCCACTGTGGGC------CTTA---------CTCCACTGG--------A--------------ACCATCACAGA-AAGG----GTACATCAGGCACTCTCTGAGGGCCCTGTCCTAGTGCTAA-CCTTGAGGCCCTCAGAAGCTCAGTAGCATTCATTCACTACATCTCCTA-TGTT------------TAAAATAAAATTATATGGTACAAGGTCTATCAGAGTATTTTT-------ACAGGATGCAAAGTGCCATTTAG--GAGTAGGATAGATGACAAAAGAGACAAACACATTTATGGGCAGGAAAGGACTGCTTCCCCCACCCCACCCCCCAAAAAAA-----AAAAAACA--AA------GTTACAA-GTGCTCCCTCTCACA------------CTG---CACTCTCTCTT-CCTC----------CCTCCAT-CCCTGGA-----TAAGGATCAG---ATGAGAGGGAGCAGGGGTTCagacagtatagtatactagaaagacaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181001211 814 + 198365852 CACACA--------------CACTGA-------------------------------------------------TTTGGACACATGCCAATAGTTATCCACATTACATGGGAAGATGCACAAAAT-ACCATGGCCCGGGCAGTAAGTGAC-gggg---tgg-g-gagggttgaggtgggtgtggggtggggggaggaaggatCTCCTAGGAGTGGAAACCGAGGACACAGG-TGGGAGAGACATGGGGAAGTGGCTAAGCAGGC--AGGTCAGCGAGAGAAACTAAAGGGCAGACAAA----TCACACCTGTGTAAGAACTTCGACAATATG--CTAATTTTGGTAAAGAAGTCAATATTCACTTTACTGCGC------ACACAGGTGAAGGAGAGGCAAAAGTCTG---GGTGGGC--------------------------------------------------------CAATATTAAATAGGAACAAACAGCAGATCTGCCTCAG--CAGTAGA-------------------GAGGGGAAGATG--------------------CTGGGC-CAGT-----GATGCCTCCAGTTCACTGTGCCGCTATGGGC------CTCA---------CTCCACCGG--------A--------------ACCATCACACA-AGGG----GTACATCCCACACTCTCTGA-GGCCCTATTCTAGTGCTAA-CCTTGAGGCTCTCAGAAGCTCAGTAGCATTCATTCACTACATCTCCTA-CTTTTAAGATATATA-CAAAATAAAATTATATGGTACAAGGTCTATCAGAGTATTTTT-------ACAGGATGCAAAGTGCCATTTAG--GACTAGGATAGATGAC--AAGAGACAAACACATTTATGGGCAGGAAAGGACTGCTTTCC---CCCCACCAAAAAAAAAAA-----AAAA------AA------GTTACAA-GTGCTCCCTCTCACA------------CTG---CGCTCGCTCTT-----CCTCCTTCCTCATCCAT-CCCTGGA-----TAAGGATCAG---ATGCCA-------GGGGTTCAGGCAGCATAGTATACTAGAAGGACAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174747126 814 + 192294377 CACACA--------------CACTGA-------------------------------------------------TTTGGACACATGCCAATAGTTATCCACATTACATGGGAAGATGCACAAAAT-ACCATGGCCCGGGCAGTAAGTGAC-gggg---tgg-g-gagggttgaggtgggtgtggggtgggggGAGGAAGGATCTCCTAGGAGTGGAAACCGAGGACACAGG-TGGGAGAGACATGGGGAAGTGGCTAAGCAGGC--AGGTCAGCGAGAGAAACTAAAGGGCAGACAAA----TCACACCTGTGTAAGAACTTCGACAATATG--CTAATTTTGGTAAAGAAGTCAATATTCACTTTACTGCGC------ACACAGGTGAAGGAGAGGCAAAAGTCTG---GGTGGGC--------------------------------------------------------CAATATTAAATAGGAACAAACAGCAGATCTGCCTCAG--CAGTAGA-------------------GAGGGGAAGATG--------------------CTGGGC-CAGT-----GATGCCTCCAGTTCACTGTGCCACTATGGGC------CTCA---------CTCCACCGG--------A--------------ACCATCACACA-AGGG----GTACATCCCACACTCTCTGA-GGCCCTATTCTAGTGCTAA-CCTTGAGGCTCTCAGAAGCTCAGTAGCATTCATTCACTACATCTCCTA-CTTTTAAGATATATA-CAAAATAAAATTATATGGTACAAGGTCTATCAGAGTATTTTT-------ACAGGATGCAAAGTGCCATTTAG--GACTAGGATAGATGAC--AAGAGACAAACACATTTATGGGCAGGAAAGGACTGCTTTCC---CCCCACCaaaaaaaaaaa-----aaaa------aa------GTTACAA-GTGCTCCCTCTCACA------------CTG---CGCTCGCTCTT-----CCTCCTTCCTCATCCGT-CCCTGGA-----TAAGGATCAG---ATGCCA-------GGGGTTCAGGCAGCATAGTATACTAGAAGGACAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163418295 820 + 180432695 CACACA--------------CACTGA-------------------------------------------------TTTGGACACATGCCAATAGTTATCCACATTACATGGGAAGATGCACAAAAT-ACCATGGCCCGGGCAGTAAGTGAC-gggg---tgg-g-gagggttgaggtgggtgtggggtggggggaggaaggaTCTCCTAGGAGTGGAAACCGAGGACACAGG-TGGGAGAGACATGGGGAAGTGGCTAAGCAGGC--AGGTCAGCGAGAGAAACTAAACGGCAGACAAA----TCACACCTGTGTAAGAACTTCGACAATATG--CTAATTTTGGTAAAGAAGTCAATATTCACTTTACTGCGC------ACACAGGTGAAGGAGAGGCAAAAGTCTG---GGTGGGC--------------------------------------------------------CAATATTAAATAGGAACAAACAGCAGATCTGCCTCAG--CAGTAGA-------------------GAGGGGAAGATG--------------------CTGGGC-CAGT-----GATGCCTCCAGTTCACTGTGCCACTATGGGC------CTCA---------CTCCACCGG--------A--------------ACCATCACACA-AGGG----GTACATCCCACACTCTCTGAGGGCCCTATCCTATTGCTAA-CCTTGAGGCTCTCAGAAGCTCAGTAGCATTCATTCACTACATCTCCTACCTTTTaagatatata-caaaataaaattatatggtaCAAGGTCTATCAGAGTATTTTT-------ACAGGATGCAAAGTGCCATTTAG--GACTAGGATACATGAC--AAGAGACAAACGCATTTATGGGCAGGAAAGGACTGctttcc---ccccacc----aaaaaaa-----aaaa------aa------gttacaaggtGctccctctcaca------------ctg---cgctctctctttcctccctccctcctcatccatcccctGGA-----TAAGGATCAG---ATGCCAG------GGGGTTCAGGCAGCATAGTATACTAGAAAGACAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110447167 812 + 127223203 CACACA--------------CACTGA-------------------------------------------------TTTGGACACATGCCAACGGTTATCCACATTACATGGGAAGATGCACAAAAT-ACTATGGCCCGGGCAGTAAGTGAC-Aggg---tgg-g-gagggttgaggtgggtgtggggtgggggGAGGAAGGATCTCCTAGGAGTGGCAACCGAGGACACAGG-TGG--GAGACATGGGGAAGTGGCTAAGCAGGC--AGGTCAGCGAGAGAAACTAAACGGCAGACAAA----TCACACCTGTGTAAGAACTTCGACAACATG--CTAATTTTGGTAAAGAAGTCAATATTCACTTTACTGCGC------ACACAGGTGAAGGAGAGGCAAAAGTCTG---GGTGGGC--------------------------------------------------------CAATATGAAATAGGAACAAACAGCAGATCTGCCTCAG--CAGTAGA-------------------GAGGGGAAGATG--------------------CTGGGC-CAGT-----GATGCCTCCAGTTCACTGTGCCACTATGGGC------CTCA---------CTCCACCGG--------A--------------ACCATCACACA-AGGG----GTACATCCCACACTCTCTGAGGGCCCTATCCTAGTGCTAA-CCTTGAGGCTCTCAGAAGCTCAGTAGCATTCATTCACTACATCTCCTA-CTTTTAAGATATATA-CAAAATAAAATTATATAGTACAAGGTCTATCAGAGTATTTTT-------ACAGGATGCAAAGTGCCATTTAG--GACTAGGATAGATGAC--AAGTGACAAACACATTTATGGGCAGGAAAGGACTGCTTTCC---CCCCACC-----AAAAAA-----AAAA------AA------GTTACAA-GTGctccctctcaca------------ctg---cgctctctctt-cctccctccctcctcatccat-ccctGGA-----TAAGGATCAG---ATGCCA-------GGGGTTCAGGCAGCACAGTATACTAGAAAGACAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23794062 835 - 128169293 --CACA--------------CACTGA-------------------------------------------------TTAGGACACCTGCCGACAGTTACCCACATGATGTGGGAAAATGCACAAAAT-GCCATGGCCTGGGCGGTAAGTGAT-GGGGAGTTGGTGCGGGGGTTGGGGTTGGCCTGGGGT--GGGGAGGAAGTATCTTCTAGGAGTGGAAACTGAGG--ACAGG-TGGGAAAGACATGGGGAAGCCGCTAAGCAGGC--AGGCCAGCGAGAGAAACTAAACTGCAGAAAAA----TCACACCTAGGTAAGAACTTCTACAGTATGCTCTAATTTTGGTAACGAAGTCAATATTCACTTTACTGCTTTTGGCAACACAGGCAAAGGAGGGGCACAAGTCTG---GATGGGC--------------------------------------------------------CAATATTAAATAGAAACAAA---CAGATCTGCCTCAG--CAGTAGA-------------------GAGGGGAAGGTG--------------------CTGGAC-CAGT-----GACGCCTCCAGCTCACTGTGCCACTGTGGGC------CTCA---------CTCCACGGG--------A--------------------ACACA-AGGGGTACGTACATCAGGCA--TTCTGAGGGCCCTGTCCTGGTGCTAACCCTTGAGGCCCTGGGAAACTCAGTAGCATTCATTAACTACATATCCTA-CTTTTAAGATATATA-CAAAA-AAAATTATATGCTACAAGGTCTATCAGAGAATTTTA-------ACAGGATGCAAAGTGCCATTTAG--GACTAGGATAGATGACAAAAGAGACAAACACATTTACAGGCAGGAAAGGACTGCTTTCC---CACCAC-----AAAAATA-----AAAA------AA------GTTACAA-GTGCTCCCTCTCACACTGCTGGCACTCCTG---CGCTCTCTCTT-CCTCCCTCCCTCCTCCTACAT-CCCTGGA-----TAAGGATCAG---ATGCCAGAAAGCAGGGGTTCAGGCAGCATAGTATATTAGAAAGATGA
i calJac3.chr8             C 0 I 275
s mm10.chr6                 40433264 775 + 149736546 CCTACA--------------CACTGA-------------------------------------------------CTTGTAGATATGCCCAAGGTAACCCATATCGGGTGAGAGGACACACGAAAT--CCACTGCCTGG-------------GTGG---TGA---CTGGGTTGATTTAG------------------------CTCCTAAAAATGAAAAGTGAGGACAGAGGACAGGAAGGACATGGGGAAGTGAT------GTC--AGGGCAGAGGAAGAACCCGAA------ACAAAACCCTCACACCTATG---AAGTTAAGGTGACTCGTTCTGATTTGTGTACAGCAGCC-TTATCTACTTGACTACTTCTGGTAATGCAGGCTGAGG---------AACCTGCCTGGTGGCC--------------------------------------------------------CAGTATTAATTAGGAACACGTGGCAGATGGGACTCAGGAAAGTAGAGAAGACCCTAGATTAAGATGAGAAGACAATA--------------------CTGGTCACGGT-----GATGGCGCCAGCTTGCAGGACAACAGCAGGC------CTCACGATCCTTTCTCAACTGGCCACCCTCA--------------ACCACCATACACAGGG----GCA----AGGCAGTC--------CTCTTTCCT-----TTG-TCCTGGGGC-----GGAGGTGTGTGAC-TTCACACAGT-CCTTGGCTA-CTTCTAAGAGATGTG-CTATAAAACTTTATTTTACACAGGAACTCCCAGTATATTTC--------ACAGGATGAGAGGAGCCATATAGAAGGCTGGCATAGCTTAG--AGGAAAAGAG-------GTGGGCAGGAAACAGCTGCTTTCT-----CCACC----AAAACTA-----AACC------AA------GTTAACA-ATGCTCACCC---AA------------GTG---CACACAC-CTT-----CCTCTCTGCAGATCC---CCAAGGG-----AAGTGACCAGGCAATGTGAGGGGCC-AAGGTTCAGGCAGTGGAGTGTGCTAGAAAGATAT
i mm10.chr6                I 29 C 0
s canFam3.chr16             52117170 940 -  59632846 CACACAGACTCCTCATGCCCCACTGATGCACCGCAGCTGGGGACCCTCTTTTCCTACATCTCTCTCGCCCTCCTGTGTGCACAGGTGCCCACAGTTCCTCAGATGGGGTGGGAAGCTGAATGAAACGGCTGTGGGCCTGGCAGTAAATGAC-TCGG---TAG-G----------------TCTGGGGAGGAGGAAGA-----------AGGGGAGGAAAT----GATGCAGG-TGGAAGAAACA--GGAAAGTGGAGAGGAAGAAAGAGGTAAACAAGAGAAAGAAAAGTCTAGACTAT---CTGCCACCTG----AGAAGATCTGTGATATGTTCTGATTTTTGTAAAGAAGCCAGTCTGCGCTCTACTGTTTGTGGTATCCGAGACTAAGGAAGGGCCAAAGTCTT---GGTGGACAAGGTCACGGGCACTAGGCTCTAACCAGCTGAGCTACCCGGCCCCTCTTGGCAAAGCTGGATTAAATAGTTACACGT----GATCTGCCTCCA--CAGCAGA-------------------GTCAGGAGGATACTGAACTCAAACCAGGAGACCTGGCC-CAGTCCCCAGAGGTCTCCAGCTCACCGGGCAACTGAGGACCGGCCTCTCA---------CGTCGCCAG--------ACGATGACTTCCTCGCCTGTCACACA-AGGG----G----------ACACCACAGGAGCTCT--------GCTAC-CCTTGGAAGATCCAAAATCTCAGGAGCATTCATTC----CAACTTCCA-CGTT-AGGAGATGGACCATAGCATTATCACTTTCTAGAGGTACTATCAGAGGTTTTTTCTTTTTAACATGACACAAAGTGCCATCTTG--GACTGTGATAGATGAC--AAGAGAGAGGTAAGTTAATGGGCAGGGAA---CAGTTTTAA--------------AAAAAAA-----AAAC------AAACGCCTATAACCA-AAACCACCAACCAAA------------GTGAAACACATTCTCCT------CCCGGTCCTCTCCACT-CCCTGGGTACAGTAATGATAAA---AAGTTGGGGGACAGAGTTTCAGGCAACGCAGTACACTAGAAAGAC--
i canFam3.chr16            C 0 C 0

a score=839175.000000
s hg38.chr7_GL383534v2_alt     66288 331 +    119183 TGGGACTTACAGTCAAGTATTTATTGGCTACTTAATATTCCCAAATTACCTAACCATCCCTGGTATGTTCC-CTCATTTAC-AAATTGGGTAT-AAATGATCATCAAATTACAGAGCAGTGATCA-GAATAAATCAAACAGCATTATAGTAAAATGCCTGCACAAAATGTCTAAATG--TGTTACAATCCCT-TCTTTGCACAGTAGCCTTAGTCTGAAAACCAT----------CACTc----------------------------------------------------------------acacacacacacacacacacacacacac------------TCGGTATACACAAATTCACAAAGCCATGCTCACTGCCTGTGACTGACAAGGAATGGGGGCAGGTACTAGCCCTCTGGCGC
s panTro4.chr7             143166280 343 + 161824586 TGGGACTTACAGTCAAGTATTTATTGGCTACTTAATATTCCCAAATTACCTAACCATCCCTGGTATGTTCC-CTCATTTAC-AAATTGGGTAT-AAATGATCATCAAACTACAGAGCAGTGATCA-GAATAAATCAAACAGCATTATAGTAAAATGCCTGCACAAAATGTCTAAATG--TGTTACAATCCCT-TCTTTGCACAGTAGCCTTAGTCTGAAAACCAT----------cactc----------------------------------------------------------------acacacacacacacacacacacacacacacacacacacacTCCGTATACACAAATTCACAAAGCCATGCTCACTGCCTGTGACTGACAAGGAATGGGGGCAGGTACTAGCCCTCTGGCGC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138987429 329 + 157549271 caggacttacagtcaagtatttattggctacttaatattccgaaattacctaaccatccctcgtatgttcc-ctcatttat-aaattgggtat-aaatgatcatcaaattacacagcagtgatca-gaataaatcaaacagcattatagtaaaatgcctgcacaAAATGTCTAAATATCTGTTACAATCCCT-TCTTTGCACAGTAGCCTTAGTCTGAAAACCAT----------CTCTC----------------------------------------------------------------TCATGCACACACACACACACACAC----------------TCTGTATACACAAATTCACAAAGCCATGCTCACTGCCTGTGACTGACAAGGAATGGGGGCAGGTACTAGCCCTCTGGTGC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93109930 323 + 110113093 cgggacttacagtcaagtatgtattggctacttaatattcccaaattacctaaccatccctggtatgttcc-ctcatttat-aaattgggtat-aaATGATCATCAAATTACAGAGCAGTGACCA-GAATAAATCAAACAGCATTATAGTAAAATGCCTGCACAAACTGTCTAAGTATCTGTTACAACCCCT-TCTTTGCACAGTAGCCTTGGTCTGAAAACCAT----------CTCTc----------------------------------------------------------------acacacacacacacacac----------------------tccatatacacaaattcacaAAGCCATGCTCACTGCCTGTAACTGACAAGGAATGGGGGCAGGTACTAGTCCTCTGATGC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181002025 319 + 198365852 TGCGACTTACAGTCAAGTATTTATTGGCTACTTAATATTCCcaaattacctaagcatccctggtatgttcc-ctcatttat-aaattgagcat-aaatgatcctcaaattacagagcagtgatca-gaataaatcgaacagcattatagtaaaatgcctgcacagagtgtctAAGTA--TGTTACAATCCCT-TCTTCACACAGCAGCCTTAGTCTGAAAACCAT------------------------------------------------------------------------------------cacacacacacacacacacac--------------TCCGTATACACAAATTCACAAAGCCATGCTCACTGCCTGTGACTGACAAGGAATGGGGGCAGGTACTAGCCTTTTGGTGT
i rheMac3.chr3             C 0 I 41
s macFas5.chr3             174747940 329 + 192294377 TGCGACTTACAGTCAAGTATTTATTGGCTACTTAATATTCCcaaattacctaagcatccctggtatgttcc-ctcatttat-aaattgagcat-aaatgatcctcaaattacagagcagtgatca-gaataaatcaaacagcattatagtaaaatgcctgcacaaagtgtctAAGTA--TGTTACAATCCCT-TCTTCGCACAGCAGCCTTAGTCTGAAAACCAT----------cacac----------------------------------------------------------------acacacacacacacacacacacacac--------------TCCGTATACACAAATTCACAAAGCCATGCTCACTGCCTGTGACTGACAAGGAATGGGGGCAGGTACTAGCCTTTTGGTGT
i macFas5.chr3             C 0 I 22
s papAnu2.chr3             163419115 323 + 180432695 TGCAACTTACAGTCAAGTATTTATTGGCTACTTAATATTCCCAAATTACCTAAGCATCCCTGGTATGTTCC-CTCATTTAT-AAATTGAGCAT-AAATGATCCTCAAATTACAGAGCAGTCATCA-GAATAAATGAAACACCATTATAGTAAAATGCCTGCACAAAGTGTCTAAGTATCTGTTACAATCCCT-TCTTTGCACTGCAGCCTTAGTCTGAaaaccat----------------------------------------------------------------------------------cacacacacacacacacacacac--------------tccgtATACACAAATTCACAAAGCCATGCTCACTGCCTGTGACTGACAAGGAATGGGGGCAGGTACTAGCCTTTTGGTGt
i papAnu2.chr3             C 0 I 22
s chlSab2.chr21            110447979 341 + 127223203 TGCGACTTACAGTCAAGTATTTATTGGCTACTTAATATTCCcaaattacctaagcatccctggtatgttcc-ctcatttat-aaattgagcac-aaatgatcctcaaattacagagcagtgatca-gaataaatcaaacagcattatagtaaaatgcctgcacaaagtgtctAAGTATCTGTTACAATCCCT-TCTTTGCACAGCAGCCTTAGTCTGAAAACCATCACTcacacacacac----------------------------------------------------------------acacacacacacacacacacacacac--------------acCGTATACACAAATTCACAAAGCCATGCTCACTGCCTGTGACTAACAAGGAATGGGGGCAGGTACTAGCCTTTTGGTGT
i chlSab2.chr21            C 0 I 15
s mm10.chr6                 40434039 359 + 149736546 ---------TGGTTAAG------CTGG---CTCATTATTTCcaaaatatgtaaccatccttggtgcctttc-ctcataagc-aaactaggtataaaataatcagcaaattgcag---agtggtta-gaatgaa---------atcagagtaaaatgcttgcacaaa-tgtcacagtattagtaacagctcTTGCCTTTTCATAGTAACCTTAGTATAAAAACCAA----------CCCCCCtctctgtctctgtctctgtctctgtctctgtctgtctgttggtctgtctgtgtctgtGTCTGTCCCCCCTCCTCCCCCCTCACACACAG--------------ACAGTATAAAC-----CAGAAAGCCAG--TCACCAGCTGTGAATGGAAAGATATGGGAGCCCCTACAAGGGCCTCAATCT
i mm10.chr6                C 0 I 1
s canFam3.chr16             52118110 308 -  59632846 -GGGACTTAGAGTCAAGTGT-CATTGGCTACTTAGTATTTCCAAATCACTCACTCAGCCTTGGTCTGTTTTGCTCACGGAGAAAACTGGGTGG-AAACGACGCTCCAGTTAGTGAG----GACCACGATTACATGAAACACCATTGAGAGTAAAGACCTGCCCGG--TGTCTGGGTATCACTTACAATCCCT-TCTGTCCACACTAACCTTAATTTGAAAACTGT----------TCTGT----------------------------------------------------------------CTacacacacacacacacacacacac--------------acC------------TGGCCAAATGATGGTCGCAG-CTGGGACTGACGCGAAGAAGGATC-----CCAGGCCTGCCGTGC
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23794897 275 - 128169293 I

a score=3241.000000
s hg38.chr7_GL383534v2_alt     66619 19 +    119183 TTTTATCAATTGATAGATA
s panTro4.chr7             143166623 19 + 161824586 TTTTATCAATTGATAGATA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138987758 19 + 157549271 TTTTATCAATTTATAGATA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93110253 19 + 110113093 TTTtatcaattgataaata
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174748291 19 + 192294377 ttgtaataaatatcaaatg
i macFas5.chr3             I 22 C 0
s papAnu2.chr3             163419460 15 + 180432695 TTGT----AATATCAAATG
i papAnu2.chr3             I 22 C 0
s chlSab2.chr21            110448335 19 + 127223203 ttgtaataaatatcaaata
i chlSab2.chr21            I 15 C 0
s mm10.chr6                 40434399 13 + 149736546 ----CGTAATCAATGAG--
i mm10.chr6                I 1 C 0
s canFam3.chr16             52118418  3 -  59632846 -TCT---------------
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23794897 275 - 128169293 I
e rheMac3.chr3             181002344 41 + 198365852 I

a score=77022.000000
s hg38.chr7_GL383534v2_alt     66638 36 +    119183 TCAATTGGCCAATATCAATAATTGATCAATTATCAG
s panTro4.chr7             143166642 36 + 161824586 TCAATTGGCCAATATCAATAATTGATCAATTATCAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138987777 36 + 157549271 CCAATTGGCCCATATCAATAACTGATCAATTATCAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93110272 34 + 110113093 tcaattggccaatatcaataattgatcaattatc--
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181002385 36 + 198365852 TCAATTGGCCAATATCAATAATTGATCAATTATCAG
i rheMac3.chr3             I 41 C 0
s macFas5.chr3             174748310 36 + 192294377 tcaattggccaatatcaataattgatcaattatcag
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163419475 36 + 180432695 TCAATTGGCCAATATCAATAATTGATCAATTATCAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110448354 36 + 127223203 tcaattggccaatatcaatacttgatcaattatcag
i chlSab2.chr21            C 0 I 15
s mm10.chr6                 40434412 20 + 149736546 ----------------AGTAATGGATCGATAATCCA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52118421  4 -  59632846 --------CCAG------------------------
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23794897 275 - 128169293 I

a score=15186.000000
s hg38.chr7_GL383534v2_alt     66674 14 +    119183 TATTATCCACCCTA
s panTro4.chr7             143166678 14 + 161824586 TATTATCCACCCTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138987813 10 + 157549271 TATTATCCAC----
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93110306  9 + 110113093 -attatcCAC----
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181002421 13 + 198365852 -ATTATCAACTATC
i rheMac3.chr3             C 0 I 2
s macFas5.chr3             174748346 13 + 192294377 -attatcaactatc
i macFas5.chr3             C 0 I 2
s papAnu2.chr3             163419511 13 + 180432695 -ATTATCAACTATC
i papAnu2.chr3             C 0 I 2
s mm10.chr6                 40434432 14 + 149736546 TTTTATCAGCTCTA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52118425 14 -  59632846 GTTTATCAACTCCA
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23794897 275 - 128169293 I
e chlSab2.chr21            110448390 15 + 127223203 I

a score=451566.000000
s hg38.chr7_GL383534v2_alt     66688 166 +    119183 TCTGTCTGTAATTAGTATAAAACTT-CTTTTCTCTTTCCCTTCCCTAAGACTCTACCACTGG--AGCTACCAATACTAAATCAGACCG-TGTGAATGTGCCCTTTCTATTCCTTCTAGTTACTCTGAAATATTTCCCAGGATAAGTCAAATGCTGGTAGCTGTTTACCTG
s panTro4.chr7             143166692 166 + 161824586 TCTGTCTGTAATTAGTATAAAACTT-CTTTTCTCTTTCCCTTCCCTAAGACTCTACCACTGG--AGCTACCAATACTAAATCAGACCG-TGTGAATGTGCCCTTTCCATTCCTTCTAGTTACTCTGAAATATTTCCCAGGATAAGTCAAATGCTGGTAGCTGTTTACCTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138987823 162 + 157549271 ----TCTGTAATTAGTATAAAACTT-CTTTGCTCTTTCCCCTCCCTAAGACTCCACCACTGG--AGCTACCAATACTAAATCAGACCG-TGTGAatgtgctctttccattccttctagttactctgaaatatttcccaggataagtcaaatgctggtagctgtttacctg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93110315 166 + 110113093 TCTGTCTGTGATTAGTATAAAACTTCCTTTTCTCTTTCCCTTCCCTAAGAC-CTGCCACTGG--AGCTACCAATACTAAATCTGACCG-TGTGAATGTGCTCTTTCCATTCCTTCTAGCTACTCTGAAATATTTCCCAGGGTGAGTCAAATGCTGGTAGCTGTTTACCTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181002436 167 + 198365852 TCTGTCTGTGATTAGTATAAGACTTTCTTTTCTCTTTCCCTTCCCTAAGACTCTACCACTGG--AGCTACCAATATTAAATCAGATCG-TGTGAATGTGCCCTTTCCATTCCTTCTAGCTACTCTGAAATACTTCCCAGGATAAATCAAATGCTGGTAGCTGTTTACCTG
i rheMac3.chr3             I 2 C 0
s macFas5.chr3             174748361 167 + 192294377 TCTGTCTGTGATTAGTATAAGACTTTCTTTTCTCTTTCCCTTCCCTAAGACTCTACCACTGG--AGCTACCAATATTAAATCAGATCG-TGTGAATGTGCCCTTTCCATTCCTTCTAGCTACTCTGAAATACTTCCCAGGATAAATCAAATGCTGGTAGCTGTTTACCTG
i macFas5.chr3             I 2 C 0
s papAnu2.chr3             163419526 162 + 180432695 TCTGTCTGTGATTAGTATAagac-----tttctctttcccttccctaaGACTCTACCACTGG--AGCTACCAATATTAAATCAGATCG-TGTGAATGTGCCCTTTCCATTCCTTCTAGCTACTCTGAAATACTTCCCAGGATAAATCAAATGCTGGTAGCTGTTTACCTG
i papAnu2.chr3             I 2 C 0
s chlSab2.chr21            110448405 167 + 127223203 TCTGTCTGTGATTAGTATAAGACTTTCTTTTCTCTTTCCCTTCCCTAAGACTCTACCACTGG--AGCTACCAATATTAAATCAGACCG-TGTGAATGTGCCCTTTCCATTCCTTCTAGCTACTCTGAAATACTTCCCAGGATAAATCATATGCTGGTAGCTGTTTACCTA
i chlSab2.chr21            I 15 C 0
s mm10.chr6                 40434446 146 + 149736546 ----CCTGTGACTAGTGTGAGATTT-CCTTCCCCCCTCCTTTCCCT-AGACTCTATCACCAGACAGCTACCATTATGCAGTCAGAAAGCCATTAATGTCTCGTTCCCAGT------------TCTGAA------CCTCGGGTGACTCTCAAGCTTGCCTCGATTTACCTG
i mm10.chr6                C 0 I 17
s canFam3.chr16             52118439 155 -  59632846 ----TCTGGGGTTC-TGTAGGATCT-CCTTTCCCCCTCCCTCTCCCTACCCTCTACTGTCCG--AGCTAGCCCTGCAGAACCAGACCC-TGTTAACGTCCCCTTGCTGTTTCTTC----TGTCCTTCAGCCTTTCCCAGAATGGCTC--ATGCCAGCATCTCTTTACCTG
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23794897 275 - 128169293 I

a score=325340.000000
s hg38.chr7_GL383534v2_alt     66854 127 +    119183 TAAATGATGGGGTACAGTATAAGCAATATGATTAGTTACAAAGTATTGGTTTTTGTCTAGCATTACGGGTA----ACTTTGGTCAAAAAAGACCAATACTTTTCAAACTACTGG---TATCTAGGAATCTCAAA--
s panTro4.chr7             143166858 127 + 161824586 TAAATGATGGGGTACAGTATAAGCAATATGATTAGTTACAAAGTATTGGTTTTTGTCTAGCATTACGGGTT----ACTTTGGTCAAAAAAGACCAATACTTTTCAAACTACTGG---TATCTAGGAATCTCAAA--
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138987985 127 + 157549271 TAAATGATGGGGTATGGTATAAGCAATATGATTAGTTACAAAGTATTGGTTTTTGTCTAGCATTATGGGTT----ACTTTGGTCAAAAAAGACCAATATTTTTCAAACTATTGG---TATCTAGGAATCTCAAA--
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93110481 127 + 110113093 TAAATGATGGGGTATGGTATAAGCAATATGATTAGTTACAAAGTATTGGTTTTTGTCTAGCATTACAGGTT----ACTTTGGTCAAAAAAGACCAATATTTTTCAAACTACTGG---TATCTAGGAATCTCAAA--
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181002603 126 + 198365852 TAAATGATGGGGTATGGTATAAGGAATATGATTAGTTACAAAGTATTGGTTTTTGTCTAGTATTACGGGTT----ACTTTGGTCAAAAAAGACCAATATTTTTCAAACTACTGG---TAT-TAGGAATCTCAAA--
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174748528 127 + 192294377 TAAATGATGGGGTATGGTATAAGGAATATGATTAGTTACAAAGTATTGGTTTTTGTCTAGTATTACGGGTT----ACTTTGGTCAAAAAAGGCCAATATTTTTCAAAGTACTGG---TATCTAGGAATCTCAAA--
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163419688 127 + 180432695 TAAATGATGGGGTATGGTATAAGGAATATGATTAGTTACAAAGTATTGGTTTTTGTCTAGTATTACGGGTT----ACTTTGGTCAAAAAAGACCAATATTTTTCAAACTACTGG---TATCTAGGAATCTCAAA--
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110448572 127 + 127223203 TAAATGATGGCGTATGATATAAGGAATATGATTAGTTACAAAGTATTGGTTTTTGTCTAGTATTACGGGTT----ACTTTGGTCAAAAAAGACTAATATTTTTCAAACTACTGG---TATCTAGGAATCTCAAA--
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52118594 126 -  59632846 TAGGTGATGGGGTATAGGGC----------CTAAGTTACAAAGTTTCTGCTTTTGTCTAGCGATAAGGATTGACCAGTTTGGCCCAAAGAGCGGTATCCAATTGGATCCACAGACTCCATCTGGGAGTCCCAACCG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40434592  17 + 149736546 I
e calJac3.chr8              23794897 275 - 128169293 I

a score=113009.000000
s hg38.chr7_GL383534v2_alt     66981 50 +    119183 TGCGAGTCA-ACCAGCATGTGTGATGAACACTTAAAAAAAA--GAGAAAAGAg
s panTro4.chr7             143166985 52 + 161824586 TGCGAGTCA-ACCAGCATGTGTGATGAACACTTAAAAAAAAAAGAGAAAAGAg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138988112 48 + 157549271 TGCAAGTCA-ACCAGCATGTGTGATGAACACTTAAAAAAAA----GAAAAGAg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93110608 50 + 110113093 TGCGAGTCA-ACCAGCATGTGTGATGAACACTTAAAAAAAA--GAGAAAAGAg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181002729 49 + 198365852 TGCGAGTCA-ATCAGCATGTCTGATGAACACTTAAGAAAAG---AGAAAAGAg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174748655 49 + 192294377 TGCGAGTCA-ATCAGCATGTCTGATGAACACTTAAGAAAAG---AGAAAAGAg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163419815 49 + 180432695 TGCGAGTCA-ATCAGCATGTCTGATGAACacttaagaaaag---agaaaagag
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110448699 39 + 127223203 TGCGAGTCA-ATCAGCATGTCTGATGAACACTT-------------AAAAGAg
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40434609 49 + 149736546 TATGAGTCAGGGCAGTATGTGTGATGACCA-TTAATAAGCA---CGGAGGGGG
i mm10.chr6                I 17 C 0
s canFam3.chr16             52118720 37 -  59632846 CGCGAGTCA-ACCAACGTG------------TTAGAGAAAG---AGAAAATAC
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23794897 275 - 128169293 I

a score=26785.000000
s hg38.chr7_GL383534v2_alt     67031 7 +    119183 ccactgc
s panTro4.chr7             143167037 7 + 161824586 ccactgc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138988160 7 + 157549271 ccactgc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93110658 7 + 110113093 ccactgc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181002778 7 + 198365852 ccactgc
i rheMac3.chr3             C 0 I 2
s macFas5.chr3             174748704 7 + 192294377 ccactgc
i macFas5.chr3             C 0 I 2
s papAnu2.chr3             163419864 7 + 180432695 ccactgc
i papAnu2.chr3             C 0 I 2
s chlSab2.chr21            110448738 7 + 127223203 ccactgc
i chlSab2.chr21            C 0 I 2
s calJac3.chr8              23795172 7 - 128169293 ccactgc
i calJac3.chr8             I 275 C 0
s mm10.chr6                 40434658 7 + 149736546 CCAATAC
i mm10.chr6                C 0 I 37
s canFam3.chr16             52118757 1 -  59632846 ------C
i canFam3.chr16            C 0 C 0

a score=303306.000000
s hg38.chr7_GL383534v2_alt     67038 139 +    119183 attccagcctaggcgacagagtgagacactgtctc------aaaaaaaaaaaaaga-----------gagagaaaaaagaatgcattacatgtagaaggagtcagcactacttcatgaaatgtctatttcagttacataagtactgtacgtgtatg
s panTro4.chr7             143167044 138 + 161824586 attccagcctaggcgacagagtgagacactgtctc------aaaaaaaaaaaaaaa------------agagagaaaagaatgcattacatgtagaaggagtcagcactacttcatgaaatgtctatttcagttacataagtaccgtacgtgtatg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138988167 147 + 157549271 attccagcctaggcaacagagtgagacactgtctc------aaaaaaaaaaaaaaaaaaaga-gacagagaaaaaaaagaatgcattacatgtagaaggagtcagcactacttcatgaaatgtctatttcagttacataagtactgta--tgtatg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93110665 143 + 110113093 attccagcctacgcgacagagtgag--actgtctc------aaaaaaaaaaaaaaaaaaaaaCGAGAGAGAGAGAAAagaatgcattacacgt---aggagtcagcactacttcatgaaatgtctgtttcagttacataagtactgta--tgtatg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181002787 124 + 198365852 attccagcctgggcgacagagtgag--actgtctc---------aaaaaaaaaaaa-------------------aaaaaatgcattacatgtagaaggagtcagcactacttcatgaaatgtctgtttcagttacgtaagtactgta--tgtatg
i rheMac3.chr3             I 2 C 0
s macFas5.chr3             174748713 127 + 192294377 attccagcctgggcgacagagtgag--actgtctc------aaaaaaaaaaaaaaa-------------------aaaaaatgcattacatgtagaaggagtcagcactacttcatgaaatgtctgtttcagttacgtaagtactgta--tgtatg
i macFas5.chr3             I 2 C 0
s papAnu2.chr3             163419873 133 + 180432695 attccagcctgggcgacagagtgag--actgtctcaaaaaaaaaaaaaaaaaaaaa-------------------aaagaatgcattacATGTAGAAGGAGTCAGCACTACTTCATGAAATGTCTGTTTCAGTTACGTAAGTACTGTA--TGTATG
i papAnu2.chr3             I 2 C 0
s chlSab2.chr21            110448747 120 + 127223203 attccagcctgggcgacagagtgag--actgcctc----------aaaaaaaaaaa-------------------aaagaatgcattacatgt---aggagtcagcactacttcatgaaatgtctgtttcagttacgtaagtaccgta--tgtatg
i chlSab2.chr21            I 2 C 0
s calJac3.chr8              23795179 124 - 128169293 actccagcctgggcga------gac--tccatcta------aaaaaaaaaaaaaaa------------aaaaagaaaataatgcattacatgtagaaaatattagcactatttcatgaa----ctgtttcagttacgtaagtactgca--tgtatg
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52118758  64 -  59632846 -----------------------------------------------------------------------------AGTATACACCACGTGTGGACGGGGTTAGTACTAGCTCGTGACACTTCTG--CCAGTGACACACGCG-------------
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40434665  37 + 149736546 I

a score=1971733.000000
s hg38.chr7_GL383534v2_alt     67177 644 +    119183 tgagcatattggttgtgatgtaaaattaacttcacatgatagatca--gtca-----------aaagagtttgaaagccaTGG-AATGTGGCAAAGAAACAAGCAGAAGTCACAAAGGC-----CTGAATTGT-CCCCACAAACTCTGTCCCTGCAAATGGAGCTCCACAGTGAATCCCACATTCT-----TCCTGTGTCCTACAGCTGAGAACC-----CCAAAATTA------CCGGCCTGGAACCCATCATCAGCTGCCATA-CCGGATTCCCCTTCTCCAGATCCTAACCCCTTTTTTTCTCCAC-------------------TCCATCCCACCTC-------------------------ATC---------CCAGAAAGCAGCCAATATT--TTCCCGC----ACGAACAGGCACTCCACACTCCAGCAGCTGCCCTGGA------GACATTGACAGTCACACCTGCGTTTCCT-TAAGCCCTGAC--------ACCACGACT--------CCTGCGATGA-----CACCTC---CTTCCC--------------CCAACCCCGAACAGCAGAGCCACTCTCAGAGTCAGAAGTCCCTAG---CTGACCCTCCAAGGCT--TCCTGGGCGCGCAGGGTCGTTCTTCCACCTTCTGTCCCCCGTGGA--------CTCTCACCTGGAAAACGCACACCCCCCTGC----CGGGTGGTTAGGCT-A-AGATTATGTGGGATAAGACTTTAATTCTCC--AAGCATCTCCGAAAGACAGCCTATCCGGGGAGGCTTCTCCTT
s panTro4.chr7             143167182 640 + 161824586 tgagcatactggttgtgatgtaaaattaacttcacatgat----ca--gtca-----------aaagagtttgaaagccaTGG-AATGTGGCAAAGGAACAAGCAGAAGTCACAAAGGC-----CTGAACTGT-CCCCACAAACTCTGTCCCTGCAAATGGAGCTCCACAGTGAATCCCACATTCT-----TCCTGTGTCCTACAGCTGAGAACC-----CCAAAATTA------CCGGCCTGGAACCCATCATCAGCTGCCATA-CCGGATTCCCCTTCTCCAGATCCTAACCCCTTTTTTTCTCCAC-------------------TCCATCCCACCTC-------------------------ATC---------CCAGAAAGCAGCCAATATT--TTCCCGC----ACGAACAGGCACTCCACACTCCAGCAGCTGCCCTGGA------GACATTAACAGTCACACCTGGGTTTCCT-TAAGCCCTGAC--------ACCACGACT--------CCTGCGATGA-----CACCTC---CTTCCC--------------CCAACCCGGAACAGCAGAGCCACTCTCAGAGTCAGAAGTCCCTAG---CTGACCCTCCAAGGCT--TCCTGGGCGCGCAGGGTCGTTCTTCCACTTTCTGTCCCCCGTGGA--------CTCTCACCTGGAAAACGCACACCCCCCTGC----CGGGTGGTTAGGCT-A-AGATTATGTGGGATAAGACTTTAATTCTCC--AAGCATCTCCGAAAGACAGCCTATCCGGGGAGGCTTCTCCTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138988314 645 + 157549271 tgagcatattggttgtgatgtaaaattaacttcacatgataggtca--gtca-----------aaaaagtttgaaagccaTGGAAATGGGGCAAAGGAACAAGCAGAAGTCACAAAGGC-----CTGAATTGT-CCCCACAAACTCTGTCCCTGCAAATGGAGCTCCACAGTGAATCCCACATTCT-----TCCTGTGTCCTACAGCTGAGAACC-----CCAAAGTTA------CCGGTCTGGAACCCATCATCAGCTGCCATA-CCGGATTCCCCTTCTCCAGATCCTAACCCCTTTTTTTCTCCAC-------------------TCCATCCCACCTC-------------------------ATC---------CCAGAAAGCAGCCAATATT--TTCCCGC----ACGAACAGGCACTCCACACTCCAGCAGCTGCCCTGGA------GACACTGACAGTCACACCTGGGTTTCCT-TAAGCCCTGAC--------ACCACGACT--------CCTGCGATGA-----CACCTC---CTTCCC--------------CCAACACCGAACAGCAGAGCCGCTCTCAGTGTCAGAAGTCCCTAG---CTGACCCTCCAAGGCT--TCCTGGGCGCGCAGGGTCGTTCTTCCACTTTCTATTCCCCGTGGA--------CTCTCACCTGGAAAACGCACACCCCCCTGC----CGGGTGGTTAGGCT-A-AGATTATGTGGGATAAGACTTTAATTCTCC--AAGCATCTCCGAAAGACAGCCTATCCGGGGAGGCTTCTCCTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93110808 641 + 110113093 tgagcatattggttgtgatgtaaaattaacttcacatgataggtca--gtca-----------aaaaagtttgaaagccaTGGAAATGGGGCAAAGGAACAAGCAGAAGTCACAAAGGC-----CTGAATTGT-CCCCACAAATTCTGTCCCTGCAAATGGAGCTCCACAGTGAATCCCACATTCT-----TCCTGTGTCCTACAGCTGAGAACC-----CCAAAGTTA------CCGGCCCGGAACCCATCATCAGCTGCCATA-CCGGATTCCCCTTCTCCAGATCCTAACCCCTTTTTTTCCCCAC-------------------TCCATCCCACCTC-------------------------ATC---------CCAGAAAGCAGCCAATATT--TTCCTGC----ACGAACAGGCACTCCACACTCCAGCAGCTGCCCTGGA------GACATTGACAGTCACACCTGGGTTTCCT-CAAGCCCTGAC--------ACCACGACT--------CCTGCGATAA-----CACTTC---CTTCCC--------------CCAACACCGAACAGCAGAGCCGCTCTCAGAGTCAGAAGTCCCCAG---CTGACCCTCCAAGGCT--TCCTGGGCGCGCAGGGTCGTTCTTCCACTTTCTATCCCCCGTGGA--------ATCTCACCTGGAAAAC---TAATCACCTGC----CGGGT-GTTAGGCT-A-AGATTATGTGGGATAAGACTTCAATTCTCC--AAGCATCTCCGAAAGACAGCCTATCCGGGGAGGCTTTCTCTT
i nomLeu3.chr13            C 0 M 645
s rheMac3.chr3             181002911 643 + 198365852 tgagcatattggttgtgatgtaaaattaatttcacatgataggtca--gtca-----------aaaaagtttgaaagccaTGGAAATGGGGCAAAGGAATAAGCAGAAGTCACAAAGGC-----CTGAATTCT-CCCCACAAACTCTGTCCCTACAAATGGAGCTCCACAGTGAATCCCACATTCT-----CCCTGTGTCCCACAGCTGAAAACC-----CCAAAGCTA------CCGGCCTGGAACCCATCCTCAGCTGCCATA-CTGGATTCCCCTTCTCCAGATCCTAACCCC-TTTTTTCCCCAC-------------------TCCATCCCACCTC-------------------------ATC---------CCAGAAAGCAGCCAATATT--TTCCTGC----ACGAACAGGCACTCCACACTCCAGCAGCTGCCCTGGA------GACATTGACCGTCACACCTGGGTTTCCT-TAAGCCCTGAC--------ACCACGACT--------CCTGCGATGA-----CACCTC---CTTCCC--------------CCAACACCGAACAGCACAGCCGCTTTCAGAGTCAGAAGTCCCTAG---CTGACCCTCCAAGGCT--TCCTGGGCGCGCAGGGTCATTCTTCCACTTTCTATCCCCCGCGGA--------CTCCCACCTGGAAAATGCACACCTCTCTGC----TGGGTGGCTAGACT-A-AGATTATGTGGGCTAAGGCTTTAATTCTCC--AAGCATCTCCGAAAGACAGCCTAT-CGGGGAGGCTTCTCCTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174748840 643 + 192294377 tgagcatattggttgtgatgtaaaattaatttcacatgataggtca--gtca-----------aaaaagtttgaaagccaTGGAAATGGGGCAAAGGAATAAGCAGAAGTCACAAAGGC-----CTGAATTCT-CCCCACAAACTCTGTCCCTACAAATGGAGCTCCACAGTGAATCCCACATTCT-----CCCTGTGTCCCACAGCTGAAAACC-----CCAAAGCTA------CCGGCCTGGAACCCATCCTCAGCTGCCATA-CTGGATTCCCCTTCTCCAGATCCTAACCCC-TTTTTTCCCCAC-------------------TCCATCCCACCTC-------------------------ATC---------CCAGAAAGCAGCCAATATT--TTCCTGC----ACGAACAGGCACTCCACACTCCAGCAGCTGCCCTGGA------GACATTGTCCGTCACACCTGGGTTTCCT-TAAGCCCTGAC--------ACCACGACT--------CCTGCGATGA-----CACCTC---CTTCCC--------------CCAACACCGAACAGCACAGCCGCTTTCAGAGTCAGAAGTCCCTAG---CTGACCCTCCAAGGCT--TCCTGGGCGCGCAGGGTCATTCTTCCACTTTCTATCCCCCGCGGA--------CTCCCACCTGGAAAATGCACACCTCTCTGC----TGGGTGGCTAGACT-A-AGATTATGTGGGCTAAGGCTTTAATTCTCC--AAGCATCTCCGAAAGACAGCCTAT-CGGGGAGGCTTCTCGTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163420006 643 + 180432695 TGAGCATATTGGTTGTGatgtaaaattaatttcacatgATAGGTCA--gtca-----------aaaaagtttgaaagccatGGAAATGGGGCAAAGGAACAAGCAGAAGTCACAAAGGC-----CTGAATTCT-CCCCACAAACTCTGTCCCTACAAATGGAGCTCCACAGTGAATCCCGCATTCT-----CCCTGTGTCCCACAGCTGAAAACC-----CCAAAGCTA------CCGGCCTGGAACCCATCCTCAGCTGCCATA-CTGGATTCCCCTTCTCCAGATCCTAACCCC-TTTTTTCCCCAC-------------------TCCATCCCACCTC-------------------------ATC---------CCAGAAAGCAGCCAGTATT--TTCCTGC----ACGAACAggcactccacactccagcagCTGCCCTGGA------GACATTGACCGTCACACTTGGGTTTCCT-TAAGCCCTGAC--------ACCACGACT--------CCTGCGATGA-----CACCTC---CTTCCC--------------CCAACACCGAACAGCACAGCCGCTTTCAGAGTCAGAAGTCCCTAG---CTGACCCTCCAAGGCT--TCCTGGGCGCGCAGGGTCATTCTTCCACTTTCTATCCCCCGCGGA--------CTCCCACCTGGAAAATGCACACCtccctgc----tgggtggctagact-a-AGATTATGTGGGCTAAGGCTTTAATTCTCC--AAGCATCTCCGAAAGACAGCCTAT-CGGGGAGGCTTCTCCTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110448867 645 + 127223203 tgagcatattggttgtgatgtaaaattaatttcacatgataggtca--gtca-----------aaaaagtttaaaagccaTGGAAATGGGGCAAAGGAACAAGCAGAAGTCACAAAGGC-----CTGAATTCTCCCCCACAAACTCTGTCCCTACAAATGGAGCTCCACAGTGAATCCCACATTCT-----CCCTGTGTCCCACAGCTGAAAACC-----CCAAAGCTA------CCGGCCTGGAACCCATCCTCAGCTGCCATA-CTGGATTCCCCTTCTCCAGATCCTAACCCC-TTTTTTCCCCAC-------------------TCCATCCCACCTC-------------------------ATC---------CCAGAAAGCAGCCAATATT--TTCCTGC----ACGAACAGGCACTCCACACTCCAGCAGCTGCCCTGGA------GACACTGACAGTCACACCTGGGTTTCCT-TAAGCCCTGAC--------ACCACGACT--------CCTGCGATGA-----CACCTC---CTTCCC--------------CCAACACCGAACAGCACAGCCGCTTTCAGAGTCAGAAGTCCCTAG---CTGACCCTCCAAGGCT--TCCTGGGCGCGCAGGGTCATTCTTCCACTTTCTATCCCCCGCGGA--------CTCCCACCTGGAAAATGCACACCTCCCTGC----CGGGTGGCTAGACT-A-AGATTATGTGGGCTAAGACTTTAATTCTCC--ACGCATCTCCGAAAGACAGCCTATCCGGGGAGGCTTCTCCTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23795303 624 - 128169293 tgagcgttgtggttggaatataaaattaacttcatatgataggtca-----a-----------aaaaagtttgaaagccaTGGAAATGGGGCAAAGGAACAAGCAGAAGTCAGAAAGGC-----CTGACTTCT-CCCCACAAACCTTGTTCCTACAAA-AGAGCTCCACAGTGAGTCCCACATTCT-----TC------CCTACAGCTGAGAACC-----CCAAAGTTA------CCGGCCTGGAAACCATCATCATCTGCCATA-CCGGATTCCCCTTCTCCAGATCCTAATCCCTTTTTCCCCCCAC-------------------TCCATCCCACCTC-------------------------ATC---------CCAGAAAGCAGCCAATATT--TTCCTCC----ACCAACAGGCATCCCACACTCCAGCAGCTGCTCTGGA------GACACTGACAGTCACACCTGGGTTTCCT-TAAGCCCTGAC--------ACC-TGATT--------CCAGCGATGACCTCCCCCCTC---CTTCCC--------------CCAACCCGGAACAGCAGAGCGGCTCT-GCAGTCAGAAGTCCCTGG---CTGACCCGCCAAGGCT--TCCTGGGCGCGTAGGGTCGTTCTTCCACTTTCTATCCCCCTTAAA--------CTCTCACCCGGAAAATGCACACCTCCTTAC----CGGGTGGTTAGGCT-G-AGATTACGTGGGATGAGACTTTAATTCTCC--AAGCA--------------CCTATCCGGGGAGGCTTCTCCTT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40434702 608 + 149736546 TGAATGTTCTGGTTGTGATGCAAATTTAATTCGATATGGCAGGTTAAAGTCA-----------GAAAAGTTTGAAAGAC-----TGTGGGATAAGGCAACAAGTAGACGGGATGGGGGTGGGGGCTGAGTTCT-TCCCACAAGTCCTGCCGCTAGGAATAGGGC----------ATTCGCCTTTGTAAGGAGCCTGTTTGCT--GGCTCAGAATCGTTGACCATGGTTAAGCCACCCACCCTAGAAGCCACCAGCATCCATCATCTCTGAAGTACCTGGCACATAATCCTATT----TCTTCTTCCTAG-------------------CCCATCCATCCTCTCAGGGTTGGAAGACTGGCTGGGAACTT---------CCAGAAGGAAGAAAACCATCCTTCCCTC----ACAAACACCAGCTCCTCACGCTAGCAGCT-CAAAGGA------GAAATCGAGG-----------------------------------------AAGAAG--------CATCCGAGCA-----TTCCT----CTTCCT--------------CAAATA-----------AGCAGCTGGGGGATTCCAATGCCTTAAG---CT---------------------GGAGCCCACAGCCATTCGTTCACTTTTATCCCCTCGCGGA------ACCGCCTACTGTTGCAACGCACTCCCCACCCCGGAGTGGGTGGCTAGGGT-AGAGACGGTGTGACAC-AGCCAGTGAGTCT---------TCCCAGAAAGGCAGCCTGCCAGCGAAAGCTTCTCC--
i mm10.chr6                I 37 C 0
s canFam3.chr16             52118822 665 -  59632846 AGAGCA------CTGTGATGTAAAATTACCTTCCAACACTGGGTTG--GACACACAGCCAAAGAAAAAGTTTGAAGGCC--------------GAGGGACACACAGGAGTCAGAAGGGC-----C--GAGTCC-CTCCAC-----CTGTTGGCACTGGT-----------------------TTCC-----TTCCGCGTCTCGCTGCTTTATCAT-----CCCTGGCCAGGTCACCCGGCCTGGACACTTGGACCGCCCGCCAC--TTGGA-------------GAGTCCAACCCT-TTCTCCTCCCACCGCGTGGCAACCCTTGGGGTCCACCAGAACCC-------------------------ATCCAGGGAGGACCAGGAGGAAGCGGGTCTC--TCCCTTCACCGACGGGCAGGCACTCCACACTCCGG-GGCTCGGCTGGGGTGTCCGGCTCAGAGGGAAACACCTGGGCTTCCTAGGAGCCCCGACCCGGGAGGACCAGGCCTGCGCCTTCACTGCCAGGG-----CAGCCCAGGCAGCCCGCTCTGGCTGGAGGCCGCTAGcgagcacccgagcacccg--agcacccgagcacccgagcacccgagcaccTGAGGCCCGCCCCGAGCGCACAGG------CGCCCACTTTTGAACCGCCGTGAAGTTCTGGCCGCTCGCTCGGA-------CCCTTCCTCCC----TGGGCGGCTAAGCTGA-AGACTATTTTCGGGGACCCTTTAATCCTCCCAAGCCACCATCAGGAGTCTCCCTGC----GGCCGCCGCTCCTC
i canFam3.chr16            C 0 C 0

a score=326327.000000
s hg38.chr7_GL383534v2_alt     67821 164 +    119183 TAATCAGC-CTTCAGCTGAATCCCTCAGCCCCATCCCTTAATGCTCCCGGCGTTAATTCCTC-AAAATAATGCAGTCAGAG--------------------AAAGTGAACTTGGCC-GCTAGGAAA-----------GTTACCCCAGAGGAAGCGACCgggagctagggcgagcggggagcgg---gg-------gacggggtggggg
s panTro4.chr7             143167822 164 + 161824586 TAATCAGC-CTTCAGCTGAATCCCTCAGCCCCATCCCTTAATGCTCCCGGCGTTAATTCCTC-AAAATAATGCAGTCAGAG--------------------AAAGTGAACTTGGCC-GCTAGGAAA-----------GTTACCCCAGAGGAAGCGACggggagctagggcgagcggggagcgg---gg-------gacggggtggggg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138988959 158 + 157549271 TAATCAGC-CTTCAGCTGAATCCCTCAGCCCCATTCCTTAATGCTCCTGGCGTTAATTCCTC-AAAATAATGCAGTCAGAG--------------------AAAGTGAACTTGGCC-GCTAGGAAA-----------GTTACCCCAGAGGAAGCGACGGGGAGCTAGGGCGAGCGGGGAGCGG---GG-------GACGGGG------
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181003554 164 + 198365852 TAATCAGC-CTTCTGCTGAAACCCTCTGCCCCATCCCTTAATGCTCCCGGCGTTAATTCCTC-AAAATAATGCAGTCAGAG--------------------AAAGTGAACTTGGCC-GCTAGGAAA-----------GTTACCCAGGAGGAAGCTACGGGGAGCTAGAGCGAGCagggcgagg---gg-------gagggggaggggg
i rheMac3.chr3             C 0 I 4
s macFas5.chr3             174749483 153 + 192294377 TAATCAGC-CTTCTGCTGAAACCCTCTGCCCCATCCCTTAATGCTCCCGGCGTTAATTCCTC-AAAATAATGCAGTCAGAG--------------------AAAGTGAACTTGGCC-GCTAGGAAA-----------GTTACCCAGGAGGAAGCTACGGGGAGCTAGAGCGAGCagggcgagg---ga-------ga-----------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163420649 153 + 180432695 TAATCAGC-CTTCAGCTGAAACCCTCTGCCCCATCCCTTAATGCTCCCGGCGTTAATTCCTC-AAAATAATGCAGTCAGAG--------------------AAAGTGAACTTGGCC-GCTAGGAAA-----------GTTACCCaggaggaagctatggggagctagagcgagcagggcgagg---gg-------ga-----------
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110449512 150 + 127223203 TAATCAGC-CTTCAGCTGAATCCCTCAGCCCCATCCCTTAATGCTCCCGGCGTTAATTCCTC-AAAATAATGCAGTCAGAG--------------------AAAGTGAACTTGGCC-GCTAGGAAA-----------GTTACCCAGGAGGAAGCTACGGGGAGCTAGAGCGAGCAGGGCGGGG---G---------------------
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23795927 158 - 128169293 TAATCAGCTCTTCAGCTGAATCCCTCAGTCCGATCACTTAATACTCCCAGCGTTAATTCCTCAAAAATAACGCAGTCAGAG--------------------AAAGTGAACTTGGTCGGCTAGGAAANNNNNNNNNNGGT---------------------GAGCGAGGGCGATCAGGCTGGGGACCGG-------GAAAGCTCAGG--
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40435310 136 + 149736546 --------------------------AGCCCCATCCCCTAACGCTCTCA-CGTTAATTCCTA-AAAATGAAGCCTTCGGAG--------------------AAAGTGAACTAGGCG-GCTGGGAAA-----------GTTACGGCGCAGGGAGCAATCCGGAGCAAGGGCAGGCGCAGAGCAG---GGTCGTTCTGAAC---------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52119487 133 -  59632846 -CACCAGT-CTCGAGCTCCATCTC----------CCCCCGCGGCTCCCCGCACGA--CCCCC-CGGACGGCGCTggcggaggcggaggcggaggcggagtcggagCGAACTTGGCC-GCGCGCAAA-----------GTTACCGCGC-------------GGGTTggggcggg-----------------------------------
i canFam3.chr16            C 0 C 0
e nomLeu3.chr13             93111449 645 + 110113093 M

a score=-14041.000000
s hg38.chr7_GL383534v2_alt     67985 16 +    119183 gcgagc---ggggagcggg------
s panTro4.chr7             143167986 10 + 161824586 gcgagc---gggg------------
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138989117  8 + 157549271 --GAAC---GGAG------------
i ponAbe2.chr7             C 0 C 0
s macFas5.chr3             174749636  2 + 192294377 -----------gg------------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163420802  2 + 180432695 -----------gg------------
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110449662  4 + 127223203 ---------TAGG------------
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23796085 13 - 128169293 GCGCACCAGTGGG------------
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52119620 12 -  59632846 -------gcgggg------ccccgg
i canFam3.chr16            C 0 I 23
e mm10.chr6                 40435446  0 + 149736546 C
e rheMac3.chr3             181003718  4 + 198365852 I
e nomLeu3.chr13             93111449 645 + 110113093 M

a score=-10248.000000
s hg38.chr7_GL383534v2_alt     68001 49 +    119183 ggacggggtggggggcgagcggggagcgggggacgggatggggggcgag
s panTro4.chr7             143167996 48 + 161824586 -gacggggtggggggcgagcggggagcgggggacggggtggggggCGCC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138989125 10 + 157549271 ---------------------------------------GGGGGGCGCC
i ponAbe2.chr7             C 0 C 0
s macFas5.chr3             174749638  7 + 192294377 ---------------------------------------gggaggc---
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163420804  7 + 180432695 ---------------------------------------gggaggc---
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110449666  7 + 127223203 ---------------------------------------GGGAGGC---
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23796098  7 - 128169293 ---------------------------------------GAGGGGC---
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40435446 31 + 149736546 --------------CCTCGTGGGAGGCGACGTACGCGGGAGGGGG----
i mm10.chr6                C 0 C 0
e canFam3.chr16             52119632 23 -  59632846 I
e rheMac3.chr3             181003718  4 + 198365852 I
e nomLeu3.chr13             93111449 645 + 110113093 M

a score=12885.000000
s hg38.chr7_GL383534v2_alt     68050 7 +    119183 cggggag
s panTro4.chr7             143168044 7 + 161824586 CGGGGAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138989135 7 + 157549271 CGGGGAG
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181003722 7 + 198365852 CGGAGAG
i rheMac3.chr3             I 4 C 0
s macFas5.chr3             174749645 7 + 192294377 cggagag
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163420811 7 + 180432695 cggagag
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110449673 7 + 127223203 CGGAGAG
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40435477 0 + 149736546 C
e canFam3.chr16             52119632 23 -  59632846 I
e calJac3.chr8              23796105 0 - 128169293 C
e nomLeu3.chr13             93111449 645 + 110113093 M

a score=263631.000000
s hg38.chr7_GL383534v2_alt     68057 106 +    119183 cTCAGGGCGCTCGCCCGG-GGGG-TTTCCTCCGCAC----AACGT---GAAAAATCTTCTAGCCC-CCAAGAAA----AGAAAACAAAACCCAACGTG------GCCACAAACCGGATGCCCTGTC
s panTro4.chr7             143168051 106 + 161824586 CTCAGGGCGCTCGCCCGG-GGGG-TTTCCTCCGCAC----AACGT---GAAAAATCTTCTAGCCC-CCAAGAAA----AGAAAACAAAACCCAACGTG------GCCACAAACCGGATGCCCTGTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138989142 106 + 157549271 CTCAGGACGCTCGCCCGG-GGGG-TTTCCTCCGCTC----AACGT---GAAAAATCTTCTGGCCC-CCAAGAAA----AGAAAACAAAACCCAACGTG------GCCACAAACCGGATGCCCTGTC
i ponAbe2.chr7             C 0 M 1178
s rheMac3.chr3             181003729 107 + 198365852 CTCAGGGCGCTCGCCTGGCGGGG-TTTCCTCCGCTC----AACGT---GAAAAACCTTCTAGCCC-GCAAGAAA----AGAAAACAAAACCCAACGCG------GCCACAAACCGGATCTCCTGTC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174749652 107 + 192294377 ctcagggcgCTCGCCTGGCGGGG-TTTCCTCCGCTC----AACGT---GAAAAACCTTCTAGCCC-GCAAGAAA----AGAAAACAAAACCCAACGCG------GCCACAAACCGGATCTCCTGTC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163420818 107 + 180432695 ctcagggCGCTCGCCTGGCGGGG-TTTCCTCCGCTC----AACGT---GAAAAACCTTCTAGCcc-gcaagaaa----agaaaacaaaacccaacgCG------GCCACAAACCGGATCTCCTGTC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110449680 107 + 127223203 CTCAAGGCGCTCGCCTGGCGGGG-TTTCCTCCGCTC----AACAT---GAAAAACCGTCCAGCCC-GCAAGAAA----AGAAAACAAAACCCAACGCG------GCCACAAACCGGATCTCCTGTC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23796105 103 - 128169293 -----GGCGCTCGCCCGGGGGGGCTTTCCTCCCCTC----ATTTT---GAAAAACCTTCTCGCCC-CCCAGATA----AGAAAACAAAAGCCAACGTG------GCCACAAACCGGATCCCCTGTC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40435477 102 + 149736546 ------------------GGGGG-TGTCTTCCTCTC----GGCGTCTATAAGAACCTTTCAGCCCAGCAGGAAAACAGAGAAAACAAAAGCCAATGTGCCCGCTGCCGCAAACCAATCCTCCCGC-
i mm10.chr6                C 0 C 0
s canFam3.chr16             52119655 113 -  59632846 CTTGCAGCGTTCACCTGGGGGGC-GTCCCTCCTCTCCGGGGGGGT---GGGGGGCCGCTCAGCCA-----AGCC----ACAAAACAAAAGCCCGCGCGCCCGGGGCTGCAAACAGGATTCCCCGGC
i canFam3.chr16            I 23 C 0
e nomLeu3.chr13             93111449 645 + 110113093 M

a score=11800.000000
s hg38.chr7_GL383534v2_alt     68163 4 +    119183 ACTG
s panTro4.chr7             143168157 4 + 161824586 ACTG
i panTro4.chr7             C 0 C 0
s rheMac3.chr3             181003836 4 + 198365852 ACTG
i rheMac3.chr3             C 0 M 586
s macFas5.chr3             174749759 4 + 192294377 ACTG
i macFas5.chr3             C 0 I 3
s papAnu2.chr3             163420925 4 + 180432695 ACTG
i papAnu2.chr3             C 0 I 3
s chlSab2.chr21            110449787 4 + 127223203 ACTG
i chlSab2.chr21            C 0 I 3
s calJac3.chr8              23796208 4 - 128169293 ACTG
i calJac3.chr8             C 0 I 3
s mm10.chr6                 40435579 4 + 149736546 ACTG
i mm10.chr6                C 0 C 0
s canFam3.chr16             52119768 4 -  59632846 GCCG
i canFam3.chr16            C 0 I 3
e nomLeu3.chr13             93111449 645 + 110113093 M
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=34162.000000
s hg38.chr7_GL383534v2_alt     68167 27 +    119183 AAGT---GCGAACACCACTGTG-----------GGG--CTGGG
s panTro4.chr7             143168161 27 + 161824586 AAGT---GCGAACACCACTGTG-----------GGG--CTGGG
i panTro4.chr7             C 0 C 0
s macFas5.chr3             174749766 27 + 192294377 AAGT---GCGAACACCACTGTG-----------GGG--CTGGG
i macFas5.chr3             I 3 M 1891
s papAnu2.chr3             163420932 27 + 180432695 AAGT---GCGAACACCACTGTG-----------GGG--CTGGG
i papAnu2.chr3             I 3 C 0
s chlSab2.chr21            110449794 27 + 127223203 AAGT---GCGAACACCACTGTG-----------GGG--CTGGG
i chlSab2.chr21            I 3 C 0
s calJac3.chr8              23796215 29 - 128169293 AAAT---GCAAACACCACTGTG-----------GGGGCCCGAG
i calJac3.chr8             I 3 C 0
s mm10.chr6                 40435583 25 + 149736546 AAGCGGAGCAAATAGGAGAGCG-----------GCG-------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52119775 38 -  59632846 AAGT---GCGAACGAGGCTGCGGGAgggcgcgcggg--ctgcg
i canFam3.chr16            I 3 C 0
e rheMac3.chr3             181003840 586 + 198365852 M
e nomLeu3.chr13             93111449 645 + 110113093 M
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=69088.000000
s hg38.chr7_GL383534v2_alt     68194 79 +    119183 ACTC-----agaggaga----ggaggggaggggaga----------ggagGTCGGCGGGGCTGGAACAAAGCCCTCGGGGCCGCTCCGAGAGGCCGCG
s panTro4.chr7             143168188 79 + 161824586 ACTC-----agaggaga----ggaggggaggggaga----------ggagGTCGGCGGGGCTGGAACAAAGCCCTCGGGGCCGCTCCGAGAGGCCGCG
i panTro4.chr7             C 0 C 0
s papAnu2.chr3             163420959 94 + 180432695 Actcagaagagaggaga----ggagaggaggggagaggaggggaggggaggtcgGCGGGGCTGAAACAAAGCCCTCGGGGCCGCTCCGAGAGGCCGCG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110449821 84 + 127223203 ACTCagaagagaggaga----ggaggggaggggaga----------ggagGTCGGCGGGGCTGAAACAAAGCCCTCGGGGCCGCTCCGAGAGGCCGCG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23796244 69 - 128169293 ACTC-----AGAGGGGA----GGGGC--------------------GGGGGTAGACGGGGCCGAAACAAAGCGCTCGGGGCCGCTCCGAGAGGCCGCG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40435608 76 + 149736546 ACTAGGC--GGCGGAGC----GGAGCTGAGAGCGGCGGCG------GGACGGAGCAGGGGGCGGAACAAAGCCCCCGGGATCCCTC----------GG
i mm10.chr6                C 0 C 0
s canFam3.chr16             52119813 80 -  59632846 gctc-----cgcggggacccgggcgcgggggggcgg----------ggggggcggc--gccTGGAACAAAGCCC-CGCGTCCTcgccggggccccgcg
i canFam3.chr16            C 0 I 678
e macFas5.chr3             174749793 1891 + 192294377 M
e rheMac3.chr3             181003840 586 + 198365852 M
e nomLeu3.chr13             93111449 645 + 110113093 M
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=43292.000000
s hg38.chr7_GL383534v2_alt     68273 63 +    119183 CGCCAGCACCCAGCTGCGCCCCGAGGGAGAGAGCTGAGGACTGGCCGACCCCCGCCCTTCCCC
s panTro4.chr7             143168267 63 + 161824586 CGCCAGCACCCTGCTGCGCCCCGAGGGAGAGAGCTGAGGACTGGCCGACCCCCGCCCTTCCCC
i panTro4.chr7             C 0 C 0
s papAnu2.chr3             163421053 63 + 180432695 CGCCAGGACCCGGCTGCGCCCCGAGGCAGGGAGCTGGGGACGCGCCGACGCCCGCCCTTCCCC
i papAnu2.chr3             C 0 M 428
s chlSab2.chr21            110449905 63 + 127223203 CGCCAGCACCCGGCTGCGCCCCGAGGCAGGGAGCTGGGGACGCGCCGACCCCCGCCCTTCCCC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23796313 63 - 128169293 CTCCCGCACCCAGCTGCGCCCCGAGGGAGGGAGATGGGGACGCGCCGCCTCTTGCCTTTCCCC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40435684 30 + 149736546 CTCCAGT--------------------------CTGGAGACACAGCG-CCCCCGTGC------
i mm10.chr6                C 0 C 0
e canFam3.chr16             52119893 678 -  59632846 I
e macFas5.chr3             174749793 1891 + 192294377 M
e rheMac3.chr3             181003840 586 + 198365852 M
e nomLeu3.chr13             93111449 645 + 110113093 M
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=191402.000000
s hg38.chr7_GL383534v2_alt     68336 271 +    119183 AAgcccgggagcccggggccggccctggtgcggggtgcggggccgggagggcaggtgcgcgCGCAGCGAGCCCCTCCCCCGCGCCCCCAAAGCTC-GGGGGCA--------CCCCGACCCTCCCCACGCGCCTGGCCCCGGCGCGGCCCTCACCCGAGCGGGGGTCGAAGGTGACCACGAACACGGCCACCACCTGGTCCTCCTCCACGTCGCCCAGCTCCAGGCGCCCGGGCTGCAGCAGCACCTCCGGGGCGGCCGGCTCCTCGGGCTCCCGCCTCCG
s panTro4.chr7             143168330 271 + 161824586 AAGCCCGGGAGCCCGGGGCCGGCCCTGGTGCGGGATGCGGGGCCGGGAGGGCAGGTGCGCGCGCAGCGAGCCCCTCCCCCGCGCCCCCAAAGCCC-GTGGGCA--------CCCCGACCCTCCCCACGCGCCTGGCCCCGGCGCGGCCCTCACCCGAGCGGGGGTCGAAGGTGACCACGAACACGGCCACCACCTGGTCCTCCTCCACGTCGCCCAGCTCCAGGCGCCCGGGCTGCAGCAGCACCTccggggcggccggctcctcgggctcccgcctccg
i panTro4.chr7             C 0 C 0
s chlSab2.chr21            110449968 263 + 127223203 --------GAGCTCGGGGCCGCCGCTGGTGCGGGGTGCGGGGCTGGGAGGGCAGGTGCGCGCGCACCGAGCCCCTCCCCCGCGCCCCCAAAGCTC-GGGGACA--------CCCCGACCCTCCCCGAGCCCCCGGCCCTGGCGCGGCCCTCACCCGAGCGGGGGTCGAAGGTGACCACGAACACGGCCACCACCTGGTCCTCCTCCACGTCGCCCAGCTCCAGGCGCCCGGGCTGCAGCAGCACCTCCGGGGCGGCCGGCTCCTCGGGCTCCCGCCTCCG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23796376 261 - 128169293 AAGCCGGGGAGCCCGGGACCCGCGC-------GTGTGCGGGGCCCGGAGGGCAGGTGCGCGCGCAGCGAGCCCCTCCCCCGCGCCCCCAAGGCCC-GGGGGCA--------TCCCGGCCCT---AAcgccccgggcccccgcgcggcTCTCACCCGATCGGGGGTCGAAGGTGACCACGAACACGGCCGCCACCTGGTCCTCCTCCACGTCGCCCAGCTCCAGGCGCCCGGGCTGCAGCAGCACCTCCGGGGCAGCCGGCTCCTCGGGCTCCCGCCTCTG
i calJac3.chr8             C 0 I 408
s mm10.chr6                 40435714 270 + 149736546 ---CCCGGGACCCCCGGGCAGG-------GAGGGATGCAGGTGTGTGGGTGCGAGTGCGTGCGCAGCGAGTCCCTCCCCCGCGCCCCCGAAACCCAGTGTGCAGTCTCCCCCACCGCCCCCCCCCAATCCTTCCATCCCTAAGTGGCTCTCACCGGAGCGAGGATCGAAGGTGACCACGAACACGGCCACCACCTGGTCCTCCTCTACGTCGCCTAGCTCTAGGCGCCCCGGCTGCAGCAGCACTTCGGGGGGAGCTGGCTCGTCGGGTTCCCGCCTTCG
i mm10.chr6                C 0 C 0
e canFam3.chr16             52119893 678 -  59632846 I
e papAnu2.chr3             163421116 428 + 180432695 M
e macFas5.chr3             174749793 1891 + 192294377 M
e rheMac3.chr3             181003840 586 + 198365852 M
e nomLeu3.chr13             93111449 645 + 110113093 M
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=49715.000000
s hg38.chr7_GL383534v2_alt     68607 76 +    119183 GGGCGGCTCCGCGGCCGG-CCGGGCGCCCCC--GCCGCCGCCCCGGCCCCAGCCTCCCGCCTGCGGCTGCGGGGCCTGC
s panTro4.chr7             143168601 76 + 161824586 gggcggctccgcggccgg-ccgggcgccccc--gccgccgccccggccccAGCCTCCCGCCTGCGGCTGCGGGGCCTGC
i panTro4.chr7             C 0 C 0
s chlSab2.chr21            110450231 76 + 127223203 CGGCGGCTCCGCGGCCGG-CCGGGCGCCCCC--GCCGCCGCCCCGGCCCCAGCCTCCCGCCTGCGGCTCCGGGGCCTGT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23797045 76 - 128169293 gggcggctccgcggtcggcccgggcgccccccgcctgccggcccggccccAGCCTCCCG-CTGCGGCTCCGGG--CTGC
i calJac3.chr8             I 408 C 0
s mm10.chr6                 40435984 76 + 149736546 GGGCGCCTCCGCGGCCAC-TCGGCCCTCCCC--ACTGCCGCCCCGGACCCATCCTCCAGCTTGCAGCGCGGGGTCCTGC
i mm10.chr6                C 0 C 0
e canFam3.chr16             52119893 678 -  59632846 I
e papAnu2.chr3             163421116 428 + 180432695 M
e macFas5.chr3             174749793 1891 + 192294377 M
e rheMac3.chr3             181003840 586 + 198365852 M
e nomLeu3.chr13             93111449 645 + 110113093 M
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=157916.000000
s hg38.chr7_GL383534v2_alt     68683 122 +    119183 GGCAGGGAGACGGCGGGGCCCTCGGCCCAGCGCAGCAGCGGCGCCGCGTCTCCCTGCTCCACCATGGCTAggcgaggcggagccgcgggcgcgaggggcggggcgggcgggctgcgggAACC
s panTro4.chr7             143168677 122 + 161824586 GGCAGGGAGACGGCGGGGCCCTCGGCCCAGCGCAGCAGCGGCGCCGCGTCTCCCTGCTCCACCATGGCTAGGCGAGGCGGAgccgcgggcgcgaggggcggggcgggcgggctgcgggaacc
i panTro4.chr7             C 0 C 0
s macFas5.chr3             174751684 122 + 192294377 GGCAGGGAGACGGCGGGGCCCTCGGCCCAGCGCAGCAGCGGCGCCGCGTCTCCCTGCTCCACCATGGCGAGGCGAGGCGGAGTCGCGGGCGCGAGGGGCGGGGCGGGCTGGCTACGGGAACC
i macFas5.chr3             M 1891 C 0
s chlSab2.chr21            110450307 122 + 127223203 GGCAGGGAGACGGCGGGGCCCTCGGCCCAGCGCAGCAGCGGCGCCGCGTCTCCCTGCTCCACCATGGCGAGGCGAGGCGGAGCCGCGGGCGCGAGGGGCGGGGCGGGCTGGCTACGGGAACC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23797121 121 - 128169293 GGCAGAGAGACGGC-GGGCCCTCGGCCCAGCGCAGCAGCGGCGCCGCGTCTCCCTGCTCCACCATGGCGAGGCGAGGCGGAgccgccggcgcgaggggcggggcgggcggtctgcgggaacc
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40436060 117 + 149736546 GGCACAGAGACCGCGGGGCCCTCGGCCCAGCGCAGCAGCGGCGCCGCGTCTCCCTGCTCCACCATGGCGAGGCGAGGCGGAGCCG-GGGCGCGAGGGGCGGGGCAGG----CTGCGGGCACT
i mm10.chr6                C 0 C 0
e canFam3.chr16             52119893 678 -  59632846 I
e papAnu2.chr3             163421116 428 + 180432695 M
e rheMac3.chr3             181003840 586 + 198365852 M
e nomLeu3.chr13             93111449 645 + 110113093 M
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=37274.000000
s hg38.chr7_GL383534v2_alt     68805 33 +    119183 CCCCTC---GCCTGgccgcgccaacgccgccgccgc--------------------
s panTro4.chr7             143168799 33 + 161824586 cccctc---gcctggccgcgccaacgccgccgccgc--------------------
i panTro4.chr7             C 0 C 0
s macFas5.chr3             174751806 33 + 192294377 CCTTTC---GCCTGgccgcgccaatgccgccgccgc--------------------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163421544 33 + 180432695 CCTTTc---gcctggccgcgccaacgccgccgccgc--------------------
i papAnu2.chr3             M 428 C 0
s chlSab2.chr21            110450429 33 + 127223203 CCCCTC---GCCTGgccgcgccaacgccgccgccgc--------------------
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23797242 33 - 128169293 cccctc---gccgggcccggccgccgcTTCCGCCGC--------------------
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40436177 56 + 149736546 CCCCTCCGGGCCTGCCCGCCCTGCCGCTTTCTGCGGTGCGGAGGCTCTCTGGGTGC
i mm10.chr6                C 0 C 0
e canFam3.chr16             52119893 678 -  59632846 I
e rheMac3.chr3             181003840 586 + 198365852 M
e nomLeu3.chr13             93111449 645 + 110113093 M
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=111143.000000
s hg38.chr7_GL383534v2_alt     68838 66 +    119183 ccgccgggtctggcgctgcccggggccccgccgcGGA----GGCGC-----CTTTCCCACGGAGCCAGAGCAGGC
s panTro4.chr7             143168832 66 + 161824586 ccgccgggtctggcgctgcccggggccccgccgcggA----GGCGC-----CTTTCCCACGGAGCCAGAGCAGGC
i panTro4.chr7             C 0 C 0
s rheMac3.chr3             181004439 66 + 198365852 CCGCCGGGTCTGGCGCTGCCCGGGGCCCCGCCGCGTA----AGCGC-----CTTTCCCACGGAGCCGGAGCAGGC
i rheMac3.chr3             M 586 C 0
s macFas5.chr3             174751839 66 + 192294377 ccgccgggtctggcgctgcccggggccccgccgcGTA----AGCGC-----CTTTCCCACGGAGCCGGAGCAGGC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163421577 66 + 180432695 ccgccgggtctggcgctgcccggggccccgccgcgta----agcgc-----cTTTCCCACGGAGCCGGAGCAGGC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110450462 66 + 127223203 ccgccgGGTCTGGCGCTGCCCGGGGCCCCGTCGCGTA----AGCGC-----CTTTCCCACGGAGCCGGAGCAGGC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23797275 56 - 128169293 CCAGCGGCTCTCGCGCTG-CCGGGGGCCTGCTGCGGA----GGCGC-----CTTTCCCACTGAGCT---------
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40436233 72 + 149736546 CCGCTGGGCTTGGCCACACCT---GCCCCTGCTCGGACACCAGCGCACTTGCTTGGTCCCGGAGCTCTGGAAGGT
i mm10.chr6                C 0 I 1
e canFam3.chr16             52119893 678 -  59632846 I
e nomLeu3.chr13             93111449 645 + 110113093 M
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=437876.000000
s hg38.chr7_GL383534v2_alt     68904 179 +    119183 GTCCGCGGAGCCGGCTTCGGGAACCGCGAGCCTATTCGGAGGCGCCCGTGTGCACGTCCGTGTGTGGG-------------ACGCGTGCGGC-CGGAACGTTCATCCTTGCG-TCCATACACCTGTGTGCGGGTGGAGGTGCCTTCTCACCTAGGGTTCCGTGGTATAGCTACCACTGTGAGTTTTT--ATGTCAC
s panTro4.chr7             143168898 179 + 161824586 GTCCGCGGAGCCGGCTTCGGGAACCGCGAGCCTGTTCGGAGGCGCCCGTGTGCACGTCCGTGTGTGGG-------------ACGCGTGCGGC-CGGAACGTTCATCCTTGCG-TCCATACACCTGTGTGCGGGTGGAGGTGCCTTCTCACCTAGGGTTCCGTGGTATAGCTACCACTGTGAGTTTTT--ATGTCAC
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93112096 179 + 110113093 GTCCGATGAACCGGGTTCGGGAACCGAGAGCCTGTTCGGAGGCGCCCGTCTGCACGTCCGTGTGTGGG-------------ACGCGTGCGGC-CGGAACGTCCATCCTTGGG-TCCATACACCTGTGTGCGGGTGGAGGTGCCTTCTCACCTAGGGTTCCGTGGTATAGATACCACTGTGAGTTTTT--ATGTCAC
i nomLeu3.chr13            M 645 C 0
s rheMac3.chr3             181004505 179 + 198365852 GTCCGCGGAACCGGCTTCGGGAACCGCCAGCCAGTTGGGAGGCGCCGGTGTGCGCGTCCGTGTGTGGG-------------ACGCGTGCGGC-CGGAACGTTCATCCTTGCG-TGCATGCACCTGTGTGCGGGTGGCGGTGCCTTCTCACCTAGGGTTCCGTGGTATAACTACCACTGTGAGTTTTT--ATGTCAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174751905 179 + 192294377 GTCCGCGGAACCGGCTTCGGGAACCGCCAGCCAGTTGGGAGGCGCCGGTGTGCGCGTCCGTGTGTGGG-------------ACGCGTGCGGC-CGGAACGTTCATCCTTGCG-TGCATGCACCTGTGTGCGGGTGGCGGTGCCTTCTCACCTAGGGTTCCGTGGTATAACTACCACTGTGAGTTTTT--ATGTCAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163421643 179 + 180432695 GTCCGCGGAACCGGCTTCGGGAACCGCCAGCCAGTTGGGAGGCGCCGGTGTGCGCGTCCGTGTGTGGG-------------ACGCGTGCGGC-CGAAACGTTCATCCTTGCG-TGCATGCACCTGTGTGCGGGTGGCGGTGCCTTCTCACCTAGGGTTCCGTGGTATAACTACCACTGTGAGTTTTT--Atgtcat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110450528 179 + 127223203 GTCCGCGGAACCGGCTTCGGGAACCGCGAGCCAGTTGGGAGGCGCCGGTGTGCGCGTCCGTGTGTGGG-------------ACGCGTGCGGC-CGGAACGTTCATCCTTGCG-TGCATGCACCTGTGTGCGGGTGGAGGCGCCTTCTCACCTAGGGTTCCGTGGTATAGCTACCACTGTGAGTTTTT--ATGTCAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23797331 176 - 128169293 ----GCGGAACCGGCTTTGGGAATCGCGAGCCTGTTCGGAGGCGTCCGGGTGCACGTCCACGTGTGGG-------------ACGCGTGCGGC-CGGAACGCTCTTCCCCGCGACCCGTGCACCTGAGTGCGGGTGGAGACGCCTTCTCACCTAGGGTTCCGTGGTGTAGCTACCAGTGTGAGTTTTT--ATGTCAC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40436306 176 + 149736546 GCCCGCA----CGGGTTCAGCGCCCCGTGGCCTGGTCCGGGCTTCAGCTCTGCATCTCTGTATGTGGGTGCTCTTGATCCATAGTGTAGGGTGCAGGACGCGCATCCCTTAG-TCTGT-CACCTGCGCGTGGGTTGAAGAGCCTTCCCAACTAGGATT--------------CCACTGTGAATTTTTGAACGTCAC
i mm10.chr6                I 1 C 0
e canFam3.chr16             52119893 678 -  59632846 I
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=352238.000000
s hg38.chr7_GL383534v2_alt     69083 125 +    119183 CATTATTTTTTAAAGTCCGCTGGTCCTGTGGACCGTGACAGATATGTATTACATAATCCTGGATGTGTGGCAGAAGCTGCTTCTAAGCAGAGGAGTGAA--GCAGAGGCGCTCTGGCTACCCAGGTG
s panTro4.chr7             143169077 125 + 161824586 CATTATTTTTTAAAGTCCGCTGGTCCTGTGGACCGTGACAGATATGTATTACATAATCCTGGATGTGTGGCAGAAGCTGCTTCTAAGCAGGGGAGTGAA--GCGGAGGCGCTCTGGCTACCCAGGTG
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93112275 125 + 110113093 CATTATTTTTTAAAGTCCCCTGGTCCTGTGGACCGTGACAGATATGTATTACATAATCCTGGATATGTGGCAGAAGCTGCTTCTAAGTAGCGGAGTGAA--GTAGAGGGGCCCTGGCTACCCAGGTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181004684 125 + 198365852 CATTATTTTTTAAAGTCCCCTGGTCCTGTGGACCGTGACAGATATGTATTACATAACCCTGGATGTGTGGCAGAATCTGCTTCTAAGCAGCGGAGTGAA--GCAGAGGCGCCCTGGCTACGCAGGTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174752084 125 + 192294377 CATTATTTTTTAAAGTCCCCTAGTCCTGTGGACCGTGACAGATATGTATTACATAACCCTGGATGTGTGGCAGAATCTGCTTCTAAGCAGCGGAGTGAA--GCAGAGGCGCCCTGGCTACGCAGGTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163421822 125 + 180432695 cattattttttaaagtccccTGGTCCTGTGGACCGTGACAGATATGTATTACATAACCCTGGATGTGTGGCAGAATCTGCTTCTAAGCAGCGGAGTGAA--GCAGAGGCGCCCTGGCTACCCAGGTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110450707 125 + 127223203 CATTATTTTTTAAAGTCCCCTGGTCCTGTGGGCCGTGGCAGATATGTATTACATAACCCTGGATGTGTGGCAGAATCTGCTTCTAAGCAGCGGAGTGAA--GCAGAGGCGCCCTGGCTACCCAGGTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23797507 123 - 128169293 CAT--TTTTTTTAAGTCCCCTGGTCCTGTGGACCGTGACAGATATGCATTACATAATCCTGGATGTGTGGCAGAAGCTGCTTACAAGCAGGGGAGTGAA--GCAGAGGCGCCCTGGCTACCCAGGTG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40436482  93 + 149736546 CATTA-----------------------TGGAGCGGAGCACATAT--ATTATATAATCCCGAGAGCTTGGTGAAAACTGCCTCCAAGTCAGGAAGTGAA--GCAGAG-------GACATCCCAAGTG
i mm10.chr6                C 0 C 0
s canFam3.chr16             52120571 127 -  59632846 CATTATTTTTTGCAACCCCCTGGGGGCGGGGACCGGGGCAGAAATGTGTTCCATCATCCTGGAAGCGCGGCCGGCGCTGGCGCTGGTCCGGGAAGGCAGCCGCAGAGGCGGCCCCGCTGCCCCGCTG
i canFam3.chr16            I 678 I 580
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=12540.000000
s hg38.chr7_GL383534v2_alt     69208 5 +    119183 TTTGC
s panTro4.chr7             143169202 5 + 161824586 TTTGC
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93112400 5 + 110113093 TTTGC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181004809 5 + 198365852 TTTGC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174752209 5 + 192294377 TTTGC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163421947 5 + 180432695 TTTGC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110450832 5 + 127223203 TTTGC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23797630 5 - 128169293 TCTGC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40436575 5 + 149736546 TTTCA
i mm10.chr6                C 0 C 0
e canFam3.chr16             52120698 580 -  59632846 I
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=58311.000000
s hg38.chr7_GL383534v2_alt     69213 25 +    119183 AATATACTCATCAATAAACACTGAA-
s panTro4.chr7             143169207 25 + 161824586 AATATACTCATCAATAAACACTGAA-
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93112405 25 + 110113093 AATATAATCATCTATAAACACTGAA-
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181004814 25 + 198365852 AATATAGCCATCAATACACACTGAA-
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174752214 25 + 192294377 AATATAGCCATCAATACACACTGAA-
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163421952 25 + 180432695 AATATAGTCATCAATACACACTGAA-
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110450837 25 + 127223203 AATATAGCCATCAATAAACACTGAA-
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23797635 25 - 128169293 AATAGACACATCAGTGAACACTGAG-
i calJac3.chr8             C 0 I 1
s mm10.chr6                 40436580 25 + 149736546 AATACACACACAAATCAAGATCAAA-
i mm10.chr6                C 0 C 0
s canFam3.chr16              7511247 26 +  59632846 AACATATACATAAATGGAGACTGGGA
i canFam3.chr16            n 580 C 0
e ponAbe2.chr7             138989248 1178 + 157549271 M

a score=398911.000000
s hg38.chr7_GL383534v2_alt     69238 127 +    119183 AAGGCCATAGGGTTAAAGTTTGGGAATTTTGTTCTTCCTTTTATATTACAAACT---GAT--------------TAGGATGGAGATTATGAGTTTATTTCCTGGTATATATACAACTTGAGGGTATTAAAT-TAGGAGGTGCTGG
s panTro4.chr7             143169232 127 + 161824586 AAGGCCATACGGTTAAAGTTTGGGAATTTTGTTCTTCCTTTTATATTACAAACT---GAT--------------TAGGATGGAGATTATAAGTTTATTTCCTGGTATATATACAACTTGAGGGTATTAAAT-TAGGAGGTGCTGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7              18558009 128 - 157549271 AAGGCCATAGGCTTAAAGTTTGGAAATTTTGCTTTTCTGTTTATATAAAAAACT---GAT--------------TGGGAGGGGAATTATGAGCTTATTTCCTGGTATATACACAGCTTGAGGGTATTAAATCTAGGATGTGCTGG
i ponAbe2.chr7             n 0 n 0
s nomLeu3.chr13             93112430 126 + 110113093 -AGGCCATAGGGTTAAGGTTTGAGAATTTTGCTCTTCCTTTTCTATTACAAACT---GAT--------------TAGGATGGAGATTATGAGTTTATTTTCTGGTATATATACAACTTGAGGGTATTAAAT-TAGGAGGTGCTGG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181004839 120 + 198365852 AAGGCCATGGGGTTAAGGTTTGGGAATTTTGCTCTTCCTTGTATATTGCAAACT---GAT--------------TAGGATGGAG--TATGAGTTTATTTCCTGGTATATATACAACTTGAGGG-----AAT-TAGGAGATGCTGG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174752239 120 + 192294377 AAGGCCATAGGGTTAAGGTTTGGGAATTTTGCTCTTCCTTGTATATTGCAAACT---GAT--------------TAGGATGGAG--TATGAGTTTATTTCCTGGTATATATACAACTTGAGGG-----AAT-TAGGAGATGCTGG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163421977 120 + 180432695 AAGGCCATAGGGTTAAGGTTTGGGAATTTTGCTCTTCCTTGTATATTGCAAACT---GAT--------------TAGGATGGAG--TATGAGTTTATTTCCTGGTATGTATACAACTTGAGGG-----AAT-TAGGAGATGCTGG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110450862 120 + 127223203 AAGGCTATAGGGTTAAGGTTTGGGAATTTTGCTCTTCCTTGTATATTGCAAACT---GAT--------------TAGGATGGAG--TATGAGTTTATTTCCTGGTATATATACAACTTGAGGG-----AAT-TAGGAGATGCTGG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23797661 122 - 128169293 AGGGCCGTAGGGTTAGGGTTTGGGGATTTTGCACTTCCCTTTATGTTACAAACT---AAT--------------TGGGGTGGAGATTATGAGTTTATTTCCTGGCGTATATACAGCATGAGGG-----TAT-TAGGAGGTGCTGG
i calJac3.chr8             I 1 C 0
s mm10.chr6                 40436605 121 + 149736546 AGGACTGTAAGGTTGCCA-TTGGGCATTTAACTTT---ATTTATATAACAGGCT---GGT--------------CGAGATAGTGATCATTAATTTATTTCCTTGCATATATGCAGTTTGGAGATATTAAGC-TGGAGG--GCTGG
i mm10.chr6                C 0 C 0
s canFam3.chr16              7511273 143 +  59632846 AAGGCTCTGGGTTTAAAGTTTGGACATTTTGGTCTTCTGTTTATCTAGCAGATTACAGATAGGGTGAATATATATAGGATGGAGACTATGAGTTTATTTCTCGGTACATACACAACTTGATAGTATTATAC-T-GGGGGTTCAGG
i canFam3.chr16            C 0 C 0

a score=682674.000000
s hg38.chr7_GL383534v2_alt     69365 266 +    119183 AGCATTTGTGGGACGAGGG-ATATTCC---CTCAGAAGATCAGGAAAAG-GAAGTTGCTCAGGGGAGAAAGAGGAAAGTCAGCTCTAAAGC----TGATGGCTTTGGAAATGGATTAGGGGTTTTCTGTGAACCCCCA-TTTTATATTTAAAAAT-AA-ATTTTACATGCCTCAATCCTT-----GAGGTAAATCTAGCAGCT-AAGTAACTCTTTAAGAGGAGATGTGTATAAAAATAGGAATAGCTATTAAAAT----AG-AAAGAAGGAGGTGGCAAGAGAAGGAG---------
s panTro4.chr7             143169359 266 + 161824586 AGCATTTGTGGGACGAGGG-ATATTCC---CTCAGAAGATCAGGAAAAG-GAAGTTGCTCAGGGGAGAAAGAGGAAAGTCAGCTCTAAAGC----TGATGGCTTTGGAAATTGATTAGGGGTTTTCTGTGAACCCCCa-ttttatatttaaaaat-aa-attttaCATGCCTCAATCCTT-----GAGGTAAATCTAGCAGCT-AAATAACTCTTTAAGAGGAGATGTGTATAAAAATAGGAATAGCTATTAAAAT----AG-AAAGAAGGAGGTGGCAAGAGAAGGAG---------
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93112556 270 + 110113093 AGCATTTGTGGGGTGAGGG-ATATTCC---CTCAGAAGATCAGGAAAAG-GAAGTTGCTTAGGGGAGAAAGAGGAATGTCAGCTCTAAAGC----TGATGGCTTTGGAAATTGATTAGGGGTTTTCTATGAACCTCCA-TTTTATATTTAAAAAT-AA-AATTTAAATGCCTCAATCCTT-----GAGGTAAATCTAGCAACT-AAGTAACTCTTTAAGAGGAGATGTGTATAAAAATAGGAATAGCTGTTAAAATAGTAAG-AAAGAAGGAGGTGGCAAGAGAAGGAG---------
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181004959 263 + 198365852 AGCGTTTGTGGGGCGAGGG-ATATTCC---CTCAGAAGATCAGGAAAAT----GTTGCTCAGGGGAGAAAGAGAAAAGTCAGCTCTAAAGC----TGATGGCTTTGGAAATTGATTAGGGGTTTTCTATGAACCCCCa-ttttatatttaaaaat-aa-attttaaatGCCTCAATCCTT-----GAGGTAAATCTAGCAGCT-AAGCAACTCTTTAAGAAGAGATGTGTATAAAAATAGGAAGAGCTATTAAAAT----GG-AAAGAAGGAGGTGGCAAGCGGAGGAG---------
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174752359 263 + 192294377 AGCGTTTGTGGGGCGAGGG-ATATTCC---CTCAGAAGATCAGGAAAAT----GTTGCTCAGGGGAGAAAGAGAAAAGTCAGCTCTAAAGC----TGATGGCTTTGGAAATTGATTAGGGGTTTTCTATGAACCCCCA-TTTTATATTTAAAAAT-AA-ATTTTAAATGCCTCAATCCTT-----GAGGTAAATCTAGCAGCT-AAGCAACTCTTTAAGAAGAGATGTGTATAAAAATAGGAAGAGCTATTAAAAT----GG-AAAGAAGGAGGTGGCAAGCGGAGGAG---------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163422097 263 + 180432695 AGCGTTTGTGGGACGAGGG-ATATTCC---CTCAGAAGATCAGGAAAAT----GTTGCtcaggggagaaagagaaaagtcagCTCTAAAGC----TGATGGCTTTGGAAATTGATTAGGGGTTTTCTATGAACcccca-ttttatatttaaaaat-aa-attttaaatgcctCAATCCTT-----GAGGTAAATCTAGCAGCT-AAGGAACTCTTTAAGAAGAGATGTGTATAAAAATAGGAAGAgctattaaaat----gg-aaagaaggagGTGGCAAGCGGAGGAG---------
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110450982 263 + 127223203 AGCGTTTGTGGGGCGAGGG-ATATTCC---CTCAGAAGATCAGGAAAAG----GTTGCTCAGGGGAGAAAGAGGAAAGTCAGCTCTAAAGC----TGATGGCTTTGGAAATTGATTAGGGGTTTTCTATGAACCCCCA-TTTTATATTTAAAACT-AA-ATTTTAAATGCCTCAATCCTT-----GAGGTAAATCTAGCAGCT-AAGCAACTCTTTAAGAGGATATGTGTATAAAAATAGGAAGAGCTATTAAAAT----GG-AAAGATGGAGGTGGCAAGCGGAGGAG---------
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23797783 259 - 128169293 AGCATTTGTGGGGTGAGGGAATATTCC---CTCATAAGATCAGGAAAAG-GAAGTTGCTCAGGGGAGAGAA---------AGCCCTAAAGC----TGATGGTTTTGGAAATTAATTAGAGATTTTCTATGAACCCCCA-TTTTATACTGAAAAA--AA-TTTTTAAATGACTCAATCCAT-----GAGGTAAATCTAGCAGCTAAAGTAACTCTTTCAGAGGAGATGTGTATAAAAATAGTAATAGCTATTAATAT----AGTACTAAAGGAGGTGGCAAGAGGAAGAG---------
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40436726 241 + 149736546 GGTG-----GGGGTGGGGG-GCATTCTACATTAAAATAAGCAGGAAAAA----GT-------------GAGTAGGAAAGCAGCCCTTAAGCCTGTCTGTGGCTTTGG----TAAGTAAGGATTGCCAATGAATTCCCT-CTGAATATTTACAAATAAA-AATTTGAATTTCTCAGTTCTTGGAAGGGGGTAAATCTGGTGACT-AA------CTT-----AGAGGTATGCATAAGA-----AATATCCATTAAAATTAT-GA-AAAAAATAAGATAGCAAGAGACAATT---------
i mm10.chr6                C 0 C 0
s canFam3.chr16              7511416 250 +  59632846 ----------------GTG-GGGTTCA---CACAAAAGATCAGGGAAAAAGTGGTCCCTCAGCGGAGAAAGAGAAAAGTCAGAACTGAAGC----TGATGGCTTTCAAAATCGGCTAAGGATTGTCTATGAACCCCCACTTTTATATTTAGAAAT-ACTATTTTGAATGCCTCAACCCTT-----GA-GTGCACCCGGAGACT-AA---------TCGGAGGAGGTGGGAATAA---TAGGAATAGCCGTTAAAAT----CGTAAGAAAGCACGATTCAAGGAGAGAAACTTGTTCAG
i canFam3.chr16            C 0 C 0
e ponAbe2.chr7              18558137   0 - 157549271 I

a score=1670797.000000
s hg38.chr7_GL383534v2_alt     69631 525 +    119183 GTACACAGTTCATCCAGGGTTCAGCAAGGCTCCATGGTTTGCCTGTTCGCAAAAGGACCCAGTAGAG-CTATGTGCT-------GGGTGCTACTCCACGGGATGTTTATGAACCTCCGTGTCCTACACGTCAGCACTGCAATGATAATGTGATTTAACCCC--TATCCCTAAGAAGATAATCAATGACTGCCC-TAGGCTGCCACTTCTAATCTAAAATCTATGA-------TATAACAATAAAGAATGTACTTATGCAGCATTTTACCCCCAAGAACAGGGTCTACTTTCATTATTTACATATTTAGTTCAGCCTTTC--CTCTACCTTACAAGGGCAAGTTTATAAGGGCAA-TAAGTGACCATTCAACGCTCACTCCCTGGAGTATGTAGACAGTCACTGAAATAGATGGGGAGGCCCAGGCATGGTCCAG---CCAACACCAGGGCCACGGCATT-ATCTGGCTC--ATTCAAAGGCACACCAGACTAGGCTATATCCAAACTACTCCAAGCTGGATTCCAAAGCCCTCTACTTCATAGGATCAGGCC
s panTro4.chr7             143169625 526 + 161824586 GTACACAGTTCATCCAGGGTTCAGCAAGGCTCCATGGTTTGCCTGTTCGCAAAAGGACCCAGTAGAC-CTATGTGCT-------GGGTGCTACTCCACGGGATGTTTATGAACCTCCGTGTCCTACACGTCAGCACTGCAATGATAATGTGATTTAACCCC--TATCCCTAAGAAGATAATCAATGACTGCCC-TAGGCTGCCACTTCTAATCTAAAATCTATGA-------TATAACAATAAAGAATGTACTTATGCAGCATTTTACCCCCAAGAACAGGGTCTACTTTCATTATTTACATATTTAGTTCAGCCTTTC--CTCGACCTTACAAGGGCAAGTTTATAAGGACAAGTAAGTGACCATTCAACGCTCACTCCCTGGAGTATGTAGACAGTCACTGAAATAGATGGGGAGCCCCAGGCATGGTCCAG---CCAACACCAGGGCCACGGCATT-ATCTGGCTC--ATTCAAAGGCACACCAGACTAGGCTATATCCAGACTACTCCAAGCCGGATTCCAAAGCCCTCTACTTCATAGGATCAGGCC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138990426 522 + 157549271 GTACACAGGTCATCCAGGGTTCAGCAAGGCTCCACGGTTTGCCTGTTCGCAAAAGGACCCAGTAGAG-CTAGGTGTT-------GGGTGTTACTCCAGGGGATGTTTATGAACCTCCGTGTCCTACATGCCAGCAGTGCAATGATAATGTGATGTAACCCC--TATCCCTAAGGAGATAATCAATGACTGCCC-TAGGCTGCCACTTCTAGTCTAAAATCTATGA-------TATAACAAT----AATGTACTTATGCAGCATTTTACCCCCAAGAACAGGGTCTACTTTCATTATTTACGTATTTAGTTCAGCCTTTC--CCCGACCTTACAAGGGCAAGCTTATAAGGGCAAGTAAGTGACCATTCAACACTCACTCCCTGGAGTATGTAGACAGTCACTGAAATAGATGGGGAGCCCCAGGCATGGTCCAG---CCAACACCAGGGCCAGGGCATT-ATCTGGCTC--ATTCAAAGGCACACCAGACTAGGCTATATCCAAACTACTCCAAGCCGGATTCCAAAGCCCGCTACTTCAGAGGATCAGGCC
i ponAbe2.chr7             M 1178 C 0
s nomLeu3.chr13             93112826 523 + 110113093 GTACACAGTTCATCCAGGGTTCAGCAAGGCTCCACGGTTTGCCCGTTCGCAAAAGGACCCAGTATAG-CTATGTGTT-------GGGTGTTACTCCAGGGGATGTTTATGAACCTCCGTGTCCTACACGCCGG-AGTGCAATGATAATGTGATTTAACCCC--TATCCCTAAGGAGAAAATCAATGACTGCCC-TACGCTGCCACTTCTAGTCTAAAATCTATGA-------TATAAGAATAAAGAATGTACTTATGCACCATTTTACCCCCAAGAACACGGTCTACTTTCATTATTTACATATTTAGTTCAGCCTTCC--CC--GACTTACAAGGGCAAGTCTATAAGGGCAAGTAAGTGACCATTCAGCGCTCACTCCCTGGAGTATGTAGACAGTCACTGAAATAGATGGGGAGCCCCAGGCATGGTCCAG---CCAACACCAGGGCCGGGGCATT-ATCTGGCTC--ATTCAAAGGCGCACCAGACTGGACTATATCCAAACTACTCCAAGCCGGATTCCAAAGCCCGCTACTTCAGAAGAGCAGGCC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181005222 525 + 198365852 GTACACAGTTCATCCAGGGTTCAGCAAGTCTCCACGGTTTGCCTGTTCTCAAAAGGACTCAGTAGAG-CTATGTGTT-------GGGTGTTACTCCAGGGGATGTTTATGAACATCCATGTCCTACACGCCAGCAGTGCAATGATAATGTGATTTAACCCG--TATCCCTAAGGAGATAACCAACGACTGCCC-TAGGCCGCCATTTCTAGTCTAAAATCTGTGA-------TATAACAATAAAGAATGTACTTATGCAGCATTTTACACCCAAGAACAGGGTCTACTTTCATTATTTACGTATTTAGTTCAGCCTTTT--CCCGACCTTACAAGGGCAAGTTTACAAGGGCAAGTAAGTGACCATTCAACGCTCGCTCCCTGGAGTATGTAGACAGTCACTGAAATAGATGAGGAGCCCCAGGTATGGTCCAG---CCAACACCAGGGCCAGGGCATT-ATCTGGCTC--ATTCAAA-GCACACCAGACTAGACTATATCCAAACTACTCCAAGCCAGATTCCAAAGCCCACTACTTCAGAAGATCAGGCC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174752622 525 + 192294377 GTACACAGTTCATCCAGGGTTCAGCAAGTCTCCACGGTTTGCCTGTTCTCAAAAGGACTCAGTAGAG-CTATGTGTT-------GGGTGTTACTCCAGGGGATGTTTATGAACATCCATGTCCTACACGCCAGCAGTGCAATGATAATGTGATTTAACCCG--TATCCCTAAGGAGATAACCAACGACTGCCC-TAGGCCGCCATTTCTAGTCTAAAATCTGTGA-------TATAACAATAAAGAATGTACTTATGCAGCATTTTACACCCAAGAACAGGGTCTACTTTCATTATTTACGTATTTAGTTCAGCCTTTT--CCCGACCTTACAAGGGCAAGTTTACAAGGGCAAGTAAGTGACCATTCAACGCTCGCTCCCTGGAGTATGTAGACAGTCACTGAAATAGATGAGGAGCCCCAGGTATGGTCCAG---CCAACACCAGGGCCAGGGCATT-ATCTGGCTC--ATTCAAA-GCACACCAGACTAGACTATATCCAAACTACTCCAAGCCAGATTCCAAAGCCCACTACTTCAGAAGATCAGGCC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163422360 525 + 180432695 GTACACAGTTCATCCAGGGTTCAGCAAGTCTCCACGGTTTGCCTGTTCTCAAAAGGACTCAGTAGAG-CTATGTGTT-------GGGTGTTACTCCAGGGGATGTTTATGAACATCCATGTCCTACACGCCAGCAGTGCAATGATAATGTGATTTAACCCG--TATCCCTAAGGAGATAACCAATGACTGCCC-TAGGCCGCCATTTCTAGTCTAAAATCTGTGA-------TATAACAATAAAGAATGTACTTATGCAGCATTTTACCCCCAAGAACAGGGTCTACtttcattatttacttatttagctCAGCCTTTT--CCCGACCTTACAAGGGCAAGTTTACAAGGGCAAGTAAGGGACCGTTCAACGCTCGCTCCCTGGAGTATGTAGACAGTCACTGAAATAGATGAGGAGCCCCAGGCATGGTCCAG---CCAACACCAGGGCCAGGGCATT-ATCTGGCTC--ATTCAAA-GCACACCAGACTAGACTACATCCAAACTACTCCAAGCCAGATTCCAAAGCCCGCTACTTCAGAAGATCAGGCC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110451245 526 + 127223203 GTACACAGTTCATCCAGGGTTCAGCAAGTCTCCACGGTTTGTCTGTTCTCAAAAGGACTCAGTAGAG-CTATGTGTT-------GGGTGTTACTCCAGGGGATGTTTATGAACATCCGTGTCCTACACGCCAGCAGTGCAATGATAATGTGATTTAACCCG--TATCCCTAAGGAGATAACCAATGACTGCCC-TAGGCTGCCACTTCTAGTCTAAAATCTATGA-------TATAACAATAAAGAATGTACTTATGCAGCATTTTACCCCCAAGAACAGGGTCTACTTTCATTATTTACATATTTAGTTCAGCCTTTT--CCCGACCTTACAAGGGCAAGTTTACAAGGGCTAGTAAGTGACCATTCAACGCTCACTCCCTGCAGTATGCAGACAGTCACTGAAATAGATGAGGAGCCCCAGGCATGGTCCAG---CCAACACCAGGGCCAGGGCATT-ATCTGGCTC--ATTCAAAGGCGCACCAGGCTAGACTATATCCAAACTACTCCAAGCCAGATTCCAAAGCCCGCTACTTCAGAAGATCAGGCC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23798042 505 - 128169293 GTACACAATTCATCCAGGGTTCAGGAAGGCCCCACGATTTCCCGATTCTCAAAAGGACTCAGCAGAG-TTGTGTGTT-------GGGAGTCACTCCAGGGGACGTTTATGGACATCTGTGTCCTACACGCCAGCAATGCAATGACAATGTGACTTAGCCCC--TATCCCTAAGGAGATTATCAATGACTGCCC-TAGACTGCCACTTCTATTCTAAAATCTGTGA-------TGTAACAACAAAGAATGTACTTATGCAGCATTTTACCCCGAAGAACAGGGTCTACTTTCATTATTTACGTATTTAGTTCAGCCTCTC--CCCAACCTCACAAGGGCAAG--------------TAAGTAACCAT-----------TCCCTGGAGTATGTAGACAGTCACTGAAATAGATGGGGAGACCCAGGAATGGTCCAGAAAAAAACACCAGGGCCAGGACATTCATGTGGTTC--ATTCGAGGGTACACCAGCCTAGGCTATATTCGAAATACTCCAGGCCAGATTCCAAAGCCCACTACTACAGAAGACCAGGCC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40436967 442 + 149736546 -----ATTTTTAGATAGAATTCA------CCTCATG--------TTTCTGACAAGGACTTGGTAAAATTTTTGTGTT-------ACCTGTTAACTCCAGGGAC-TTTGTGAA-GCCCAGGTCTCCC-----------------------TGCTTTGATCC---TGTTCCCAAGAGGATCATCAATGACTGCCTACCCACAGCTGCTGCTAGTTCCAAATATGTGACTCACGCCTTAACAGTAA---------------AACGTTTTA--CCAAAAAGTAGTGATTGCTGTCATCATC--ATTAGTTAGTTCACCCTAAC--CCCCATCCCCTAAAGACATGT-------------TAAGTGACTACCT--CACTCAATTAATGGAGT--------AATTACTGAAAT-----GGGAGTCTGGGGAAT-GTACAG---TCCAAGCCAGGGCTAGGGCACA-ATCCAGTTTAAATTCAAGGGCACATCTGCTTGAGTTTTGCACAAACT-CTGAAGGCCAGACAACAAAGCCCACTACTTCAGAAACTGAGG-C
i mm10.chr6                C 0 C 0
s canFam3.chr16              7511666 470 +  59632846 ACACCAAATTTATC------TCAGCA--------------GTCTGCTCTCAGAAGGACCCAGTGGAT-TTATGATTTATGCAGCAGGTGTCGC-CCAGGGGGTGTTGATAAAGATCCATACCCCATGTGCCCGAGACACAGTGGTGATACAGTTTAACCCCATCTTCCCAAGGGAGATGGTCCGGGACTGCCC-AGGACTGCAGGTTTCAGGCCAAAATCCATGA-------CAAAACAAT----AATCTGTTTATGCCGCATTTTGC-CTAAAGGAGGGGGACTCCTTTCGTTATTTATATGTTTAGCGCGACCTCCCGGCTCCTCACCCCAAGGGCAAG--------------CAAGAGGCCATCC--CCCAGGCTCTGTGGGGGCT-----TGGTCACCTAAACGGATGGGG-GCCCCGGGCAGGGTCCGG------------GGG--GGGCCACT-GTACAGCGG--GTTCAAGGGCGCAGCCGGAGACACGGCGCCC--------CGAGGCCCGACGCCAGGGCCCGCAGCTGCGGGGGGCCGGGCC
i canFam3.chr16            C 0 n 0

a score=54190.000000
s hg38.chr7_GL383534v2_alt     70156 17 +    119183 ATAGCCAAAGCTTTTCA
s panTro4.chr7             143170151 17 + 161824586 ATAGCCAAAGTTTTTCA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138990948 17 + 157549271 ATAGCCAAAGCTTTTCA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93113349 17 + 110113093 ATAGCCAAAGCTTTTCA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181005747 17 + 198365852 ATAGCCAAAGCTTTTCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174753147 17 + 192294377 ATAGCCAAAGCTTTTCA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163422885 17 + 180432695 ATAGCCAAAGCTTTTCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110451771 17 + 127223203 ATAGCCAAAGCTTTTCA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23798547 15 - 128169293 ATAGCCAAA--TTCTCA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40437409 14 + 149736546 ACAGCCAAAGCTG---A
i mm10.chr6                C 0 C 0
e canFam3.chr16              7512136  0 +  59632846 I

a score=110815.000000
s hg38.chr7_GL383534v2_alt     70173 27 +    119183 GGTTGAGGCATTCAAAATTTTATTTTT
s panTro4.chr7             143170168 27 + 161824586 GGTTGAGGCATTCaaaattttattttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138990965 27 + 157549271 GGTTGAGGCATTCaaaattttattttt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93113366 27 + 110113093 GGTTGTGGCATTCAGAATTTTATTTTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181005764 27 + 198365852 GGTTGAGGCATTCaaaattttattttt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174753164 27 + 192294377 GGTTGAGGCATTCAAAATTTTATTTTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163422902 27 + 180432695 GGTTGAGgcattcaaaattttattttt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110451788 27 + 127223203 GGTTGAGGCATTCAAAATTTTATTTTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23798562 27 - 128169293 GGCTGAGACATTCAAtttttttttttt
i calJac3.chr8             C 0 I 310
s mm10.chr6                 40437423 27 + 149736546 AGTTGAGAAGTACAAGATTCTATTTTT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52121278 27 -  59632846 GGTTGAGGCATTCAAAATAGTATTTCT
i canFam3.chr16            I 580 C 0

a score=888558.000000
s hg38.chr7_GL383534v2_alt     70200 295 +    119183 AAATAT-AAAGTAGAGGTTCGTAGAGAA----TAAACAATTTCCAAAGCCATTGGCTTTAGGGCTGATGGA-------------------CTTTCTCTTTCTCCC-----------------------------------------------------------------------------------TGGAGGGACTTCCT---------------TGT-CCTGAT----CTTTTGTAG----GAATAGCC------------ACCTTC---------------------------------------CACCACCCCCACCC---------------------------------------------------------------------------------------------CCCAGCACATCCTAGATTTAATACCCTCAAGCTGTGTATATACCAGGAAATAAGCTCATAATTCCCCTCCCA--------------ATC---AGTTTTTTATATAAACAGAAAAGCAAAATTTCCAAACCTTAAGGCTATGGCCTTCTCCAGTCTTCATTTGTGTGTATAT
s panTro4.chr7             143170195 295 + 161824586 aaatat-aaaGTAGAGGTTCGTAGAGAA----TAAACAATTTCCAAAGCCATTGGCTTTAGGGCTGATGGA-------------------CTTTCTCTTTCTCCC-----------------------------------------------------------------------------------TGGAGGGACTTCCT---------------TGT-CCTGAT----CTTTTGTAG----GAATAGCC------------ACCTTC---------------------------------------CACCACCCCCACCC---------------------------------------------------------------------------------------------CCCAGCACATCCTAGATTTAATACCCTCAAGCTGTGTATATACCAGGAAATAAGCTCATAATTCCCCTCCCA--------------ATC---AGTTTTTTATATAAACAGAAAAGCAAAATTTCCAAACCTTAAGGCTATGGCCTTCTCCAGTCTTCATTTGTGTGTATAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138990992 293 + 157549271 aaatat-aaaGTAGAGGTTCATAGAGAA----TAAACAATTTCCAAAGCCATTGGCTTTAGGGCTGATGGA-------------------CTTTCTCTTTCTCCC-----------------------------------------------------------------------------------TGGAGGGACTTCGT---------------CAT-CCTGAT----CTTTTGTAG----GAATAGCC------------ATCTTC---------------------------------------CACCACCCCCACCC---------------------------------------------------------------------------------------------CCCAGCACATCCTAGATTTAATACCCTCAAGCTGTGTATATACCAGGAAATAAGCTCATAATTCCCCTCCCA--------------ATC---AGTTTTTTATATAAACAGAAAAGCAAAATTTCCAAACTTTAAGCCTATGGCCTTCTCCAGTCTTCATT--TGTGTATAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93113393 295 + 110113093 AAATAT-GAAGTAGAAGTTCATAGAGAA----TAAACAATTTCTAAAGCCATTGGCTTTAGGGCTGATGGA-------------------CTTTCTCTTTCTCCC-----------------------------------------------------------------------------------TGGAGGGACTTCCT---------------TGT-CCTGAT----CTTTTGTAG----GAATAGCC------------ATCTTC---------------------------------------CACCGCCCCCACCC---------------------------------------------------------------------------------------------CCCAGCACATCCTAGATTTAATACCCTCAAGCTGTGTATATACCAGGAAATAAGCTCATAATTCCCCTCCCA--------------ATC---AGTTTTTTATATAAACAGAAAAGCAGAATTTCCAAACCTTAAGCCTATGGCCTTCTCCAGTCTTCATTTGTGTGTATAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181005791 295 + 198365852 aaatat-aaaGTAGAGGTTCATAGAGAA----TAAACAATTTCCAAAGCCATTAGCTTTAGGGATGATGGA-------------------CTTTCTCCTTCTCCC-----------------------------------------------------------------------------------TGAAGGGACTTCCT---------------TGT-CCTGAG----CTTTTGTAG----GAATAGCC------------ATCTTC---------------------------------------CACCGCCCCCACCC---------------------------------------------------------------------------------------------CCCAGCACATCCTAGATTTAATACTCTCAAGCTGTGTATATACCAGGAAATAAACTCATAATTCCCCTCCCA--------------ATC---AGTTTTTTATATAAACAGAAAAGCAAAATTTCCAAACCCTAAGCCTATGGTCTTCTCCAGTCTTCATTTGTGTGTATAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174753191 295 + 192294377 AAATAT-AAAGTAGAGGTTCATAGAGAA----TAAACAATTTCCAAAGCCATTAGCTTTAGGGATGATGGA-------------------CTTTCTCCTTCTCCC-----------------------------------------------------------------------------------TGAAGGGACTTCCT---------------TGT-CCTGAG----CTTTTGTAG----GAATAGCC------------ATCTTC---------------------------------------CACCGCCCCCACCC---------------------------------------------------------------------------------------------CCCAGCACATCCTAGATTTAATACTCTCAAGCTGTGTATATACCAGGAAATAAACTCATAATTCCCCTCCCA--------------ATC---AGTTTTTTATATAAACAGAAAAGCAAAATTTCCAAACCCTAAGCCTATGGTCTTCTCCAGTCTTCATTTGTGTGTATAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163422929 295 + 180432695 aaatat-aaagtagaGGTTCATAGAGAA----TAAACAATTTCCAAAGCCATTAGCTTTAGGGATGATGga-------------------ctttctccttctccc-----------------------------------------------------------------------------------tgaaGGGACTTCCT---------------TGT-CCTGAG----CTTTTGTAG----GAATAGCC------------ATCTTc---------------------------------------caccgcccccaccc---------------------------------------------------------------------------------------------cccagcacATCCTAGATTTAATACCCTCAAGCTGTGTACATACCAGGAAATAAACTCATAATTCCCCTCCCA--------------ATC---AGttttttatataaacagaaaagcaaaatttcCAAACCCTAAGCCTATGGTCTTCTCCAGTCTTCATTTGTGTGTATAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110451815 292 + 127223203 AAATAT-AAACTAGAGGTTCATAGAGAA----TAAACAATTTCTAAAGCCATTAGCTTTAGGGATGATGGA-------------------CTTTCTC---CTCCC-----------------------------------------------------------------------------------TGGAGGGACTTCCT---------------TGT-CCTGAT----CTTTTGTAG----GAATAGCC------------ATCTTC---------------------------------------CACCGCCCCCACCC---------------------------------------------------------------------------------------------CCCAGCACATCCTACATTTAATACCCTCAAGCTGTGTATATACCAGGAAATAAACTCATAATTCCCCTCCCA--------------ATC---AGTTTTTTATATAAACAGAAAAGCAAAATTTCCAAACCCTAAGCCTATGGCCTTCTCCAGTCTTCATTTGTGTGTATAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8             104371379 278 + 128169293 CAGTAT-AAAATGGGGGTTCATAGAAAATCTCTAATTAATTTCCAAAACCATCAGCTTTAGGG-------------------------------CTTTCTCTCCC-----------------------------------------------------------------------------------CTGAGCAACTTCCT---------------TTT-CCTGAT----CTTATGAGG----GAATAT---------------TCCCT---------------------------------------CACCCCACAAATGC---------------------------------------------------------------------------------------------TCCAGCACCTCC------TAATACCCTCATGCTGTATATACGCCAGGAAATAAACTCATAATCTCCACCCCA--------------ATT---AGTTTGTAACATAAAGGGAAGTGCAAAATCCCCAAACCCTAACCCTACGGCCCTTCTCAGTGTTCACTGATGTGTCTAT
i calJac3.chr8             n 310 n 310
s mm10.chr6                 40437450 540 + 149736546 AGATAC-AAAAC-TCGGTTGATAGATAATCCTTAACCACTTTCCAAAGTCACCGGTTTTAGGGCAAATGGGTTGGTCGGttctttcttttctttttctttcttccttccttccttccttcctttctctttttTAATAGTTGTGTTGTTTGTTTTTGGTGTTTTTCTTCTTGTTTTTGttttgttttgtttgaggcactttctctatgtagtcctggctgt-cctgggactctctctatagaccaggctagcctggaactcagagatcctcctgcctttgcctcccaaatgctgggattaaaggtgtgggcaccatcaccgtccggctGGTATTTTTCTTTCTTACTTGAGAAAAATACTTTCCTGGgttgttgttgttgttgttgttgttgttgttgttTGGCAATGTCTACCTCTCCCACCACCCCCTA-ATTTAATGTC------CTACATATATACCGATAAATCAACTTGTAATGTCCATACCA--------------ACC---ACCTCTCTGT----ACATAAAAGCAG--TTTTCAAACT-------GACAGCCATGTTCTGTCTTCA-------GCATAT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52121305 293 -  59632846 AAATATAAAAGTGGGGGTTCATAGACAATCCTTAGCCGATTTTGAAAGCCATCAGCTTCAGTTCTGAC----------------------TTTTCTCTTTCTCCG-----------------------------------------------------------------------------------CTGAGGGACCACTT---------------TTTCCCTGAT----CTTTTGTGT----GAA--------------------------------------------------------------CCCCACCCTGAACC---------------------------------------------------------------------------------------------CCCAGTA-----------TAATACTATCAAGTTGTGTATGTACCGAGAAATAAACTCATAGTCTCCATCCTATATATATTCACCCTATCTGTAATCTGCTAGATAAACAGAAGACCAAAATGTCCAAACTTTAAACCCAGAGCCTTTCCCAGTCTCCATTTATGTATATGT
i canFam3.chr16            C 0 C 0

a score=1058653.000000
s hg38.chr7_GL383534v2_alt     70495 367 +    119183 CCTGGCTTATGAACCACAATGTCTATCTTTAAATTCCTAG-----TGCATAATA----AGTGCCCAA-AAATACTTGTCAATTAAATATATGAATGAAAGTAGAG----ACAATTCTGTGCAATGGGCCCTCTTGTCAGACTTTATCTAATATCTTGGACATAGTAGGTGTTGGAAAGTGTTAATGACAGTGATGACATCCCTCTTAG--CACATGCATTCACAGTCTGATTGAGGTA-GTATACCTGACCATCAGAGTTATCTCCTCTTTGATGACTGAATT-TCACAAGATGATAGGGAGGGAACTAATTGAATTTAGCTATTAGAACAGCTCTGC-----------TGTTGACGAAAAGAAG-----------AGAGGAAG----GGGCAATCTTATTCAGGGACCCT
s panTro4.chr7             143170490 367 + 161824586 CCTGGCTTATGAACCATAATGTCTATCTTTAAATTCCTAG-----TGCATAATA----AGCGCCCAA-AAATACTTGTCAATTAAATATATGAATGAAAGTAGAG----ACAATTCTGTGCAATGGGCCCTCTTGTCAGACTTTATCTAATATCTTGGACATAGTAGGTGTTGGAAAGTGTTAATGACAGTGATGACATCCCTCTTAG--CACATGCATTCACAGTCTGATTGAGGTA-GTATACCTGACCATCAGAGTTATCTCCTCTTTGATGACTGAATT-TCACAAGATGATAGGGAGGGAACTAATTGAATTTAGCTATTAGAACAGCTCTGC-----------TGTTGACGAAAAGAAG-----------AGAGGAAG----GGGCAATCTTATTCAGGGACCCT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138991285 371 + 157549271 CCTGGCTTACGAACCACAATGTCTATCTTTAAATTCCTAG-----TGCCTAATA----AGTGCCCAA-AAATACTTGTCAATTAAATATATGAACGAAAGTAGAGACTTACAATTCTGTGCAATGGGCCCTCTTGTCAGGCTTTATCTAATATCTTGGACATAGGAGGTGTTCAAAAATGTTAATGACAGTGATGACATCCCTCTTGG--CACATGCATTCACAGTCTGATTGAGGTA-GTATACCTGACCATCAGAGTTATCTTCTCTTTGATGACTGAATT-TCACAAGATGATAGGGAGAGAACTAATTGAATTTCGCTGTTAGAATAGCTCTGC-----------TGTTGACGAAAAGAAG-----------AGAGGAAG----GGGCAATCATATTTAGGCACCCT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93113688 367 + 110113093 CCTGGCTCATGAACCGCAATGTCTATCTTTAAATTCCTAG-----TGCATAATA----AGTGCCCAA-AAATACTTGTCAATTAAATATATGAATGAAAGTAGAG----ACAATTCTGTGCAATGGGCCCTCTTGTCAGGCTTTATCTAATATCTTGGACATAGTAGGTGTTCAAAAATGTTAATGACAGTGATGACATCCCTCTTAG--CACATGCATTCACAGTCTGATTGAGGTA-GTATACCTGACCATCAGAGTTATCTCCTCTTTGATGACTGAATT-TCACAAGATGATAAGGAGGGAACTAATTGAATTTAGCTATTAGAATAGCTCTGC-----------TGTTGACGAAAAGAAG-----------AGAGGAAG----GGGCAATCATACTCAGGGACCCT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181006086 368 + 198365852 CCTGGCTTATCAGCCACAATGTC--TCTTTAAATTCCTAG-----TGCATAACA----AGTGTCCAACGAATACTTGTCAATTAAATATATGAATGAAAGTAGAGACTTACAATTCTGTGCAATGGGCCCTCTTGTCAGGCTTTATCTAACATCTTGGACCTAGTAGGTGTTCAAAAATGTTAATGACAGTGATGACATCCCTCTTAG--CACATGCATTCACAGTCTGATGGAGGTA-TTATACCTGACCATC--AGTTATCTCCTCTTTGGTGACTGAATT-TCACAAGATGATAGGGAGGGAACTAATTGAATTTAGCTATTAGAATAGCTCTGC-----------TGTTGACGAAAAGAAG-----------AGAGGAAG----GAGCCATCATATTCAGGGACCCT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174753486 368 + 192294377 CCTGGCTTATCAGCCACAATGTC--TCTTTAAATTCCTAG-----TGCATAACA----AGTGTCCAACGAATACTTGTCAATTAAATATATGAATGAAAGTAGAGACTTACAATTCTGTGCAATGGGCCCTCTTGTCAGGCTTTATCTAACATCTTGGACCTAGTAGGTGTTCAAAAATGTTAATGACAGTGATGACATCCCTCTTAG--CACATGCATTCACAGTCTGATGGAGGTA-TTATACCTGACCATC--AGTTATCTCCTCTTTGGTGACTGAATT-TCACAAGATGATAGGGAGGGAACTAATTGAATTTAGCTATTAGAATAGCTCTGC-----------TGTTGACGAAAAGAAG-----------AGAGGAAG----GAGCCATCATATTCAGGGACCCT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163423224 370 + 180432695 CCTGGCTTATCAGCCACAATGTCTATCTTTAAATTCCTAG-----TGCATAACA----AGTGTCCAACGAATACTTGTcaattaaatatatgaatgaaagtACAGACTTACAATTCTGTGCAATGGGCCCTCTTGTCAGGCTTTATGTAACATCTTGGACCTAGTAGGTGTTCAAAAATGTTAATGACAGTGATGACATCCCTCTTAG--CACATGCATTCACAGTCTGATGGAGGTA-TTATACCTGACCATC--AGTTATCTCCTCTTTGGTGACTGAGTT-TCACAAGATGATAGGGAGGGAACTAATTGAATTTAGCTATTAGAATAGCTCTGC-----------TGTTGacgaaaagaag-----------agaggaag----gagccATCATATTCAGGGACCCT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110452107 366 + 127223203 CCTGGCTTATCAGCCACAATGTCTATCTTTAAATTCCTAG-----TGCATAATA----AGTGTCCAACGAATACTTGTCAATTAAATATATGAATGAAAGTAGAG----ACAATTCTGTGTAATGGGCCCTCTTGTCAGGCTTTATGTAACATCTCGGACCTAGTAGGTGTTCAAAAATGTTAATGACAGTGATGACATCCCTCTTAG--CACATGCATTCACAGTCTGATTGAGGTA-TTATACCTGACCATC--AGTTATCTCCTCTTTGGTGACTGAATT-TCACAAGATGATAGGGAGGGAACTAATTGAATTTAGCTATTAGAATAGCTCTGC-----------TGTTGACGAAAAGAAG-----------AGAGGAAG----GAGCAATCATATTCAGGGACCTT
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40437990 374 + 149736546 TCTAGTTCACCAACCATGGAGCCTAATAATATATTCCTGG-----TGCTTTGCATAATATTGCTCAACAGGTATCTGTCAGCTCAGGA----AGTGGAAGCAGAAACTTACACTCCGATGCTGCAGGCCCTC-TGCCAGGCTTTATCTAGTATTGTGCCCATGGTAGGTGCTCAAAACTGTTTGTGAGGGCGATAACA-CTCTTTTAGCACACACACATTCACAATCTGAAAGAGGCCTTTATACCTGACCCCCAGATTAA---CCTTTGTATCTACTGAATTGTCACATGATGATAGAGA-------CATTGAGTCTGGCTGTTAGAACACTTCTGCTTGGGAACAAGTGTTTGAGATGAGATG-----------GGAGAAAG----G-TCACTTATTTTCAAAGATACT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52121598 364 -  59632846 TCTAGCTCACCAGCCTCTATGTCTATCTTCAGATTCCTGGAGCCTTGCATAACA----GGTGCAACACGGACATTCATCAACTAGGCAGGTgaa------tagagac--tcatgtctgtaccaccggctccttctgcaggcttaacctagtatcttgcacataacaggtgctcaaaaaGGTTAATGATGGTGATGACAGGCCTCTTAA--CACA--CATTCACGGCCTGAAACTGGCT-CTATACCTGACTATCAGATTTATCTTCTATCT----ACTGAATT-TCATAAAATGATAGA---------AACTAAAATTAGCTATTAGAACAGCTCTCC-----------TG-----GGAAAGGAGTGTGAAGGGCAAGAGGAAGTGCAGAGCAGTCACATTCAAAGACCCT
i canFam3.chr16            C 0 I 128
e calJac3.chr8             104371657 310 + 128169293 I

a score=1428673.000000
s hg38.chr7_GL383534v2_alt     70862 522 +    119183 AGTCT-------------------------------------------------------------------------GATGTAATATTTCAAAATGATTTCACCTAGGACACTATATGTGTAAAACTGA----------------AAATTTATTTTACTTTCCCAAATACTAAATATGTCTATGTTATATCAAATAC----------------------------------------------------------------------AGAAAAATACCTTTGATCTATAATCTCACCACTGAATTGGCCACTGTTAAGATTTTGCTGATCCTATTTCATCAATTCTAGGATGCAAAAATTTTTAGTTTTTA-ATGTTGCCATAGTGACTCATGATCGCTGCTGGTCCCCGCTGAGGTCTAGTTCTcacagaggacattttgacttgcttttgtcagccatctggaggcaccaccaacctga-----gactgctttgaat-aaattctccac-tgaggttc-------------attcaaccacgc----------------------aacctagcttcaatactgacttgtagttcacattcttggacaagacttttttc-tc-ctttca-----cctagtgacccagttgagacaagcatgttttcttgcttgtcaaatctctccgtgtgggaggtttACTTGCCA-AGTTTATTCATGGTACCCCTATT
s panTro4.chr7             143170857 522 + 161824586 AGTCT-------------------------------------------------------------------------GATGTAATATTTCAAAATGATTTCACCTAGGACACCATACGTGTAAAACTGA----------------AAATTTATTTTACTTTCCCAAATACTAAATATGTCTATGTTATATCAAATAC----------------------------------------------------------------------AGAAAAATACCTTTGATCTATAATCTCACCACTGAGTTGGCCACTGTTAAGATTTTGCTGATCCTATTTCATCAATTCTAGGATGCAAAAATTTTTAGTTTTTA-ATGTTGCCATAGTGACTCACAATCGCTGCTGGTCCCCGCTGAGGTCTAGTTCTcacagaggacattttgacttgcttttgtcagccatctggaggcaccaccaacctga-----gactgctttgaat-aaattctccac-tgaggtgc-------------attcaaccacgc----------------------aacctagcttcaatactgacttgtagttcacattcttggacaagacttttttc-tc-ctttca-----cctagtgacccagttgagacaagcacgttttcttgcttgtcaaatctctccgtgtgggaggtttACTTGCCA-AGTTTATTCATGGTACCCCTATT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138991656 517 + 157549271 AGTCT-------------------------------------------------------------------------GATGTAATATTTCAAAATGATTTCACCTAGGACACCATATGTGTAAAACTGA----------------AAATTTATTTTACTTTCCCAAATGCTAAATATGTC--TGTTATATCAAATAC----------------------------------------------------------------------AGAAAAATACTTTTGAT---TAATCTCACCACTGAGTTGGCCACTGTTAAGATTTTGCTGATCCTATTTCATCAATTCTAGGATGCAAAAATTTTTAGTTTTTA-ATGTTGCCATAGTGACTCACGATCGCTGCTGGTCCCTGCTGAGGTCTAGTTCTCAcagaggacattttgacttgcttttgtcagccatctggaggcaccaccaacctga-----gactgctttgaat--aattctccac-tgaggttc-------------attcaaccacgc----------------------aACCTAGCTTCAGTACTGACTTGTAGTTCACGTTCTTGGGCAAGCCTTTATTC-TC-CTTTCA-----TCTAGTGACCCAGTTGAGACAAGCACGTTTTCTTGCTTGTCAAATCTCTCCGTGTGGGAGGTTTACTTGCCACAGTTTATTCATGGTACCCCTATT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93114055 520 + 110113093 AGTCT-------------------------------------------------------------------------GATGTAATATTTCAAAATGATTTCACCTAGGACACCATATGTGTAAAACTGA----------------AAATTTATTTTACTTCCCCAAATACTAAATATTTT--TGTTATATAAAATAC----------------------------------------------------------------------AGAAAAATACCTTTCATCTATAATCTCACCACTGAGTTGGCCACTGTTAAGATTTTGCTGATTCTATTTCATCAATTCTAGGATGCAAAAATTTTTAGTTTTTA-ATGTTGCCATAGTGACTCACGATCGCTGCTGGTCCCCACtgaggtctagttctcacagaggacattttgacttgcttttgtcagccatctggaggcaccaccaacctga-----gactgctttgaat--aattctccac-tgaggttc-------------attcaaccatgc----------------------aacctagcttcaatactgacttgtagttcacattcttgggcacgactttattc-tc-ctttca-----tctagtgacccagttgagacaagcacgttttcttgcttgtcaaatctctccgtgtgggaggtttACTTGCCACAGTTTATTCATGGCACCCCTATT
i nomLeu3.chr13            C 0 I 1770
s rheMac3.chr3             181006454 524 + 198365852 AGTAT-------------------------------------------------------------------------GATGTAATATTTCAAAATGATTTCACCTAGGACACCGTATGTGTAAAACTGA----------------AAATTTATTTTACTTTCCCAAATACTGAATATGTCTATGTTATATCAAATAC----------------------------------------------------------------------AGAAAACTATCTTTGATCTATAATCTCACCACTGAGCTGGCCACTGTTAAGATGTTGCTGATCCTATTTCATCAATTCTAGGATGCAAAAATGTTTAGTTTTTATTTGTTGCCATAGTGACTCACGATTGCTGCTAGTCCCTGCTGAGGTCTAGTTCTcatagaggacattttgacttgctttttttagccatctggaggcaccaccaacctaa-----gactgccttgaat-aaattctccac-tgaggttc-------------attcaaccacac----------------------aacctagcttcaatactgacttgtagttcacattcttaggcaagatttttttc-tc-ctttca-----cctagtgacccagttgagacaagcacgttttcttgcttgtcaaatctctccgtgtgggaggtttactggccacagtttcTTCATGGTACCCCCATT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174753854 524 + 192294377 AGTAT-------------------------------------------------------------------------GATGTAATATTTCAAAATGATTTCACCTAGGACACCGTATGTGTAAAACTGA----------------AAATTTATTTTACTTTCCCAAATACTGAATATGTCTATGTTATATCAAATAC----------------------------------------------------------------------AGAAAACTATCTTTGATCTATAATCTCACCACTGAGCTGGCCACTGTTAAGATGTTGCTGATCCTATTTCATCAATTCTAGGATGCAAAAATGTTTAGTTTTTATTTGTTGCCATAGTGACTCACGATTGCTGCTAGTCCCTGCTGAGGTCTAGTTCTCATAGAGGACATTTTGACTTGCTTTTTTTAGCCATCTGGAGGCACCACCAACCTAA-----GACTGCCTTGAAT-AAATTCTCCAC-TGAGGTTC-------------ATTCAACCACAC----------------------AACCTAGCTTCAATACTGACTTGTAGTTCACATTCTTAGGCAAGATTTTTTTC-TC-CTTTCA-----CCTAGTGACCCAGTTGAGACAAGCACGTTTTCTTGCTTGTCAAATCTCTCCGTGTGGGAGGTTTACTGGCCACAGTTTCTTCATGGTACCCCCATT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163423594 523 + 180432695 AGTCT-------------------------------------------------------------------------GatgtaatatttcaaaatgatttcacCTAGGACACTGTAtgtgtaaaactga----------------aaatttattttactttcccaAATACTAAATATGTCTATGTTATATCAAATAC----------------------------------------------------------------------AGAAAACTATCTTTGATCTATAATCTCACCACTGAGTTGGCCACTGTTAAGATGTTGCTGATCCTATTTCATCAATTCTAGGAtgcaaaaatgtttcattttta-atgttgcCATAGTGACTCATGATTGCTGCTAGTCCCTGCTGAGGTCTAGTTCTCATAGAGGACATTTTGACTTGCTTTTGTTAGCCATCTGGAGGCACCACCAACCTGA-----GACTGCCTTGAAT-AAATTCTCCAC-TGAGGTTC-------------ATTCAACCACAC----------------------AACCTAGCTTCAGTACTGACTTGTAGTTCACATTCTTAGgcaagatttttttc-tc-ctttca-----cctAGTGACCCAGTTGAGACAAGCACGTTTTCTTGCTTGTCAAATCTCTCCGTGTGGGAGGTTTACTGGCCACAGTTTCTTCATGGTACCCCCATT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110452473 521 + 127223203 AGTCT-------------------------------------------------------------------------GATGTAATATTTCAAAATGATTTCACCTAGGACACCGTATGTGTAAAACTGA----------------AAATTTATTTCACTTTCCCAAATACTAAATATGTCTATGTCATATCAAATAC----------------------------------------------------------------------AGAAAACTCTCTTTGATCTATAATCTTACCACTGAGTTGGCCACTGTTAAGATGTTGCTGATCCTATTTCATCAAT--TAGGATGCAAAAATGTTTCATTTTTA-ATGTTGCCATAGTGACTCACGATTGCTGCTAGTCCCTGCTGAGGTCTAGTTCTCATAGAGGACATTTTGACTTGCTTTTGTTAGCCATCTGGAGGCACCACCAACCTGA-----GACTGCCTTGAAT-AAATTCTCCAC-TGAGGTTC-------------ATTCAACCACAC----------------------AACCTAGCTTCAATACTGACTTGTAGTTCACATTCTTAGGCAAGATTTTTTTC-TC-CTTTCA-----CCTAGTGACCCAGTTGAGACAAGCACGTTTTCTTGCTTGTCAAATCTCTCCGTGTGGGAGGTTTACTGGCCACAGTTTCTTCATGGTACCCCCATT
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40438364 504 + 149736546 CAGCT-------------------------------------------------------------------------GGCAGAGTATTTTGAAATGTGTTCACTTAGAACACCATGTCTACATTTTAAA----------------TAAAATCTTTTGGTCTCCCAAATACTAAATATATCTCCATCACATAAAATAC----------------------------------------------------------------------AGAA---TATTTTTAGTCTACCATGTCATCACATAGATGTAAAGTCTTAAATTG-------TCTTAGCTCATCAGTTCTAGAGCACAGAACGCAACTGTGTATA-AACATGTTGTGGTGTCTGACAGTTG----------TCACTGAGGTCTGGTTGTCACAGAAGAGATTCCTGGTGGC-ATTGTCAGAAGTGGGAAGGAACCACCAACCCAACCAGGGACTACGCTGAGT-AAAAGCCATGCTTGAAGTTC-------------CCTGGAAGCTGCTGGTGCTGTGACTTCAAAGGAAAAACTATCTGAATCAGCAGCCTGCGATCCAAAGTCTTAGCTGGGAGTTTTTTC-TCACCCCCAGCCCCTCTAGTGACAAATTCAAAACAAGAA-ATTTCCTTATCT-----AGCTCTCTCTGTAGGAGGCTGCTTTAC--------------------------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52122090 686 -  59632846 agtctgcctctctctctctctgtgtctctcatgaataaataattaaaatcttaaaaaaaaaAAAAACAAAGTCCCTAAGATGTTATATTTCAAAATGAGTTC-CCTAGAACCCCATCTATCttttattaatttttttctaagttttaaaataaaattatCTTCCCAAATAGTGAATATATCTACATTATATAAAGTACattatataaagcatatctacattatataaatatatttataatatataaaaatgtatataaaagacattatataaaagcaattttgatctataatctcaccattgagttggccactgttaagattttgCTTATCCTGCTTTACCAATTCTGGGGTGCAG--CTTTTCACTGGGTA-ACATTGCTACCGAGACTCATAATTGCTGCCAG-CCCTGCTGAGGTCGAGTTCTCACAGAGGAGATTTgtgtttgcttttgtcagccatctggaggcaccaccaacctgA-----CATTACTTTGAGTGAAATTCTCTGCTTGAGGTTCTTTGGTAGTGGCAATTCAAA-ATGC----------------------AGACTATCGCAAAGACTGGCTTATAGTTCAAATTCTTGGGGGCGATGCTTTTCTTC-CCTCTA-----GCTGATGACAAAGTGGAGATGAGCAAGTTGCCCTGCCTGGC---TCTTTCC-TGTGGGAGATACATTTGCCGCAGCTGCATATGGGTTATGCT---
i canFam3.chr16            I 128 C 0
e calJac3.chr8             104371657 310 + 128169293 I

a score=210666.000000
s hg38.chr7_GL383534v2_alt     71384 149 +    119183 AGACTTCTC-----------ATTTTTTTAATCTGAA-GGCACATAAATATAATAGAACAGTGGGCCCTCCACCTTCACAGGTTCATCATCGGTGGTAATGTTACCTTGT-------TGCTGACAGGTACTATGTAGTTAGGCCTAggaaggttgcatctgcactgaac
s panTro4.chr7             143171379 149 + 161824586 AGACTTCTC-----------ATTTTTTAAATCTGAA-GGCACATAAATATAATAGAACAGTCGGCCCTCCACCTTCACAGGTTCATCATCGGTGGTAATGTTACCTTGT-------TGCTGACAGGTACTATGTAGTTAGGCCTAggaaggttgcatctgcactgaac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138992173 149 + 157549271 AGACTTCTC-----------ATTTTTTTATTCTGAA-GGCACACAAATATAATAGAACAGTCGGCCCTCCACCTTCACAGGTTCATCATGGGTGGTAATGTTACCTTGT-------TGCTGACAGGTACTATGCAGTTAGGCCTAAgaaggctgcatctgcactgaac
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181006978 159 + 198365852 AGACTTCTCTTTTT--TTTTTTTTTTTTATGATGAATGGCACATAAATATAATAGAACAGTCAGCCCTCCACATTCACAGGTTCAGCATTGGTGGCAACGTTACCTTGT-------TGCCGACATGTACTATGTAGTTAGGCCTAggaaggttgcatctgcactgaac
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174754378 153 + 192294377 AGACTTCTC--------ATTTTTTTTTTATGATGAATGGCACATAAATATAATAGAACAGTCAGCCCTCCACATTCACAGGTTCAGCATTGGTGGCAACGTTACCTTGT-------TGCCGACATGTACTATGTAGTTAGGCCTAggaaggttgcatctgcactgaac
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163424117 152 + 180432695 agacttctc---------atttttttttatgatgaatGGCACATAAATATAATAGAACAGTCAGCCCTCCACATTCACAGGTTCAGCATCGGTGGCAACGTTACCTTGT-------TGCCGACATGTACTATGTAGTTAGGCCTAGGAAGGTTGCATCTGCACTGAAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110452994 151 + 127223203 AGACTTCTC----------ATTTTTTTTATGATGAATGGCACATAAATATAATAGAAcagtcagccctccacattcacaggttcagcatcggtggcaacgttaccttgt-------tgccaacatgtactatgtagttaggcctaggaaggttgcatctgcactgaac
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40438868  68 + 149736546 --------------------TGTTTTATATG------GGGCTATACCAGCAAGGGAA----------------TTCAATGG-----------------------CTTGT-------CTTAAACAGATATTTATTAGATAG----------------------------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52122776 114 -  59632846 GGACTCCTCATCTTGGGGGTATTTTAAAATTCTTGGTGGCATGGAAAAATAAT--------------------------GCTATATCTTAAATGATATAATTGTTTTCTCTGTTTATGttgaaatataccatatatcaat----------------------------
i canFam3.chr16            C 0 C 0
e calJac3.chr8             104371657 310 + 128169293 I
e nomLeu3.chr13             93114575 1770 + 110113093 I

a score=144468.000000
s hg38.chr7_GL383534v2_alt     71533 75 +    119183 atacgcagactttttcttgtcattattccttaaataatacagtagaatgactgtttacattgtattaggtattgt
s panTro4.chr7             143171528 75 + 161824586 atacgcagactttttcttgtcattattccttaaataatacagtagaatgactgtttacattgtattaggtattgt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138992322 74 + 157549271 atacgtgga-tttttcttgtcacttttccctaaataatacagtagaatgactgtttacattgtattaggtattct
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181007137 75 + 198365852 atatgcagcctttttcttgtcatttttccctaaataatactatagaatgactgtttacattttattaggtattgt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174754531 75 + 192294377 atatgcagcctttttcttgtcatttttccctaaataatactatagaatgactgtttacattttattaggtattgt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163424269 75 + 180432695 ATATGCAgcctttttcttgtcatttttcccTAAATAATACAGTAGAATGactgtttacattttattaggtattat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110453145 74 + 127223203 atatgcagcc-ttttcttgtcatttttccctaaataatacagtagaatgactgtttatattttattaggtattgt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23798899 74 - 128169293 acatgcagactttttcttgtcattatttcctaaataatacagtataaggactgtttacattgtatta-gtattgt
i calJac3.chr8             I 310 C 0
s mm10.chr6                 40438936 23 + 149736546 ---------TTTCTTTCTGTGTTTGTT------------------------TGTTT-------------------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52122890 60 -  59632846 ------------tttattattttttttcttagcatcagaccatgaaca---ttttcccatcctattaggaagttt
i canFam3.chr16            C 0 I 300
e nomLeu3.chr13             93114575 1770 + 110113093 I

a score=33008.000000
s hg38.chr7_GL383534v2_alt     71608 13 +    119183 aagtagtctagag
s panTro4.chr7             143171603 13 + 161824586 aagtagtctagag
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138992396 13 + 157549271 aagtagtctagag
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181007212 13 + 198365852 aagtagtctaaag
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174754606 13 + 192294377 aagtagtctaaag
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163424344 13 + 180432695 aagcagtctaaag
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110453219 13 + 127223203 aagtagtctaaag
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23798973 13 - 128169293 aagtagtcttgag
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40438959  8 + 149736546 -----GTTTAGAG
i mm10.chr6                C 0 C 0
e canFam3.chr16             52122950 300 -  59632846 I
e nomLeu3.chr13             93114575 1770 + 110113093 I

a score=382026.000000
s hg38.chr7_GL383534v2_alt     71621 162 +    119183 attatttaaagtatataggatgatgtgcctaggttacatgtaaatactatgccattttatatcaaggccttgagcatccatggattttagtatccatgggagtcctggaaccagtccccacagatatcaaggaaggactgTATATCTTAAAATAGAtatatt
s panTro4.chr7             143171616 162 + 161824586 attatttaaagtatataggatgatgtgcctaggttacatgtaaatactatgccattttatatcagggccttgagcatccatggattttggtatccatgggagtcctggaaccagtccccacagatatcaaggaaggactgTATATCTTAAAATAGATATATT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138992409 162 + 157549271 attatttaaagtatatacgatgatgtacctaggttacatgtaaatactatgccaatttatatcaaggccatgagcatccatggattttaatatccacaggggtcctggaaccagtccccacagataccgaggaaggactgTATATCTTAAAATAGATATATT
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181007225 162 + 198365852 attatttaaagtatataggatgatacgcctaggttacatgtaaatactatgccattttatatcaaggccttgagcatccatggattttggtatccatgggggtcctggaaccaattcccacagataccgagggaggactATATATCTTAAAATAGATGTATT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174754619 162 + 192294377 attatttaaagtatataggatgatacgcctaggttacatgtaaatactatgccattttatatcaaggccttgagcatccatggattttggtatccatgggggtcctggaaccaattcccacagataccgagggaggactATATATCTTAAAATAGATGTATT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163424357 162 + 180432695 attatttaaagtatataggatGATATGCCTAAGTTACAtgtaaatactatgccattttatatcaaggccttgagcatccatggattttggtatccatgggggtcctggaaccaattcccacAGATACCGAGGGAGGACTATATATcttaaaatagatatatt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110453232 162 + 127223203 attatttaaagtatataggatgatatgcctaggttacatgtaaatactatgccattttatatcaaggccttgagcatccatggattttggtatccatgggggtcctggaaccaattcccacagataccgagggaggactATATATCTTAAAATAGATGTATT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23798986 161 - 128169293 attatttaagatatagagggtgatgtgcctagcttacatgtaaatactatgccattttatatcaaggacttgagcatccatggattttggtatccacggg-gtcctggaactaatccccatagttactgagggaagactgTATATCTTAAAATAGATATATT
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40438967   0 + 149736546 C
e canFam3.chr16             52122950 300 -  59632846 I
e nomLeu3.chr13             93114575 1770 + 110113093 I

a score=312401.000000
s hg38.chr7_GL383534v2_alt     71783 132 +    119183 tatgtttacatgttgaatttatgttctatatCCATTTTGTGTTCTTTTTACCCTTAACATCAGAATATGAACATTTTGAGATCCGATTTAGAAACTTTTTATATGCATCCT---------TTTTTTTTGAGATGGAGTGTC
s panTro4.chr7             143171778 132 + 161824586 TATGTTTACATGTTGAATTTATGTTCTATATCCATTTTGTGTTCTTTTTACCCTTAACATCAGAATATGAACATTTTGAGATCCGATTTAGAAACTTTTTATATGCATCCT---------TTTTTTTTGAGATGGAGTGTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138992571 133 + 157549271 TATGTTTACATGTTGAAATTATGTTCTATATCCATTTTGTGTTCTTTTTACCCTTAACATCAGAATATGAACATTTTGAGATCCAATTTAGAAACTTTTTATATGCATCCT--------CTTTTTTTTGAGATGGAATGTC
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181007387 135 + 198365852 TATGTTTACATGTTGAAATTATGCTCTATATCCATTTTGTGTTATTTTTACCCTTAACATCAGAATATTAACAATTTGAGATCTGATTTAGAAACTTTTTATATGCATC--TTTT----TTTTTTTTTGAGATGGAGTGGC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174754781 137 + 192294377 TATGTTTACATGTTGAAATTATGCTCTATATCCATTTTGTGTTATTTTTACCCTTAACATCAGAATATGAACAATTTGAGATCTGATTTAGAAACTTTTTATATGCATCTTTTTT----TTTTTTTTTGAGATGGAGTGGC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163424519 137 + 180432695 tatgtTTACATGTTGAAATTATGCTCTATAtccattttgtgttatttttaccCTTAACATCAGAATATGAACAATTTGAGATCTGATTTAGAAACTTTTTAtatgcatccttttt----tttttttttgagatggagtggc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110453394 137 + 127223203 TATGTTTACATGTTGAAATTATGCTCTATATCCATTTTGTGTTATTTTTACCCTTAACATCAGAATATGAACAATTTGAGATCTGATTTAGAAACTTTTTATATGCATACTTTTT----TTTTTTTTTGAGATAGAGTGGC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23799147 141 - 128169293 TATGTTTACATGTTGAAATTATGCTCTATATCCATTTTGTGTTCTTTTTATCCTTAACATCAGAATATGAACATTTTGAGATCCTACTTAGAAACCTTTTATATGCATCCTTTTTGTTGTTGTTTTTTGAGACGGAGTCTC
i calJac3.chr8             C 0 I 2
s mm10.chr6                 40438967  98 + 149736546 -------------------TATGCTCAATGTTAGATTTGTTTTCTTTTCTCCCTT-ACATCAGATCATGAACATTTTGGTATCCTATCACGGAAAA--CTACATGAATTATTTTT---------------------GTGGC
i mm10.chr6                C 0 C 0
e canFam3.chr16             52122950 300 -  59632846 I
e nomLeu3.chr13             93114575 1770 + 110113093 I

a score=192154.000000
s hg38.chr7_GL383534v2_alt     71915  97 +    119183 CGG-----CATCATTCTTATGTATGTTTTCCATTGTATGTGTGTTTGATAATTTACTTAGCCATCTTTCATTGCTAGATAGTCAAGACCCTCCCTTTTTGTT
s panTro4.chr7             143171910  97 + 161824586 TGG-----CATCATTCTTATGTATGTTTTCCATTGTATGTGTGTTTGATAATTTACTTAGCCATCTTTCATTGCTAGATAGTCAAGACCCTCCCTTTTTGTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138992704  97 + 157549271 CTG-----CATCATTCTTATGTACGTTTTCCATTGTATGTGTGTTTGATAATTTACTTAGCCATCTTTCATTGCTAGATAGTCAAGACCCTCCCTTTTTATT
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181007522  97 + 198365852 CTG-----TATCATTCTTATGTATGTTTTCCGTTGTATGTGTGTTTGATCATTTACTTAGCCATCTTTCATTGCTAGATAGTCAAGACCCTCCCTTTTTGTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174754918  97 + 192294377 CTG-----TATCATTCTTATGTATGTTTTCCGTTGTATGTGTGTTTGATCATTTACTTAGCCATCTTTCATTGCTAGATAGTCAAGACCCTCCCTTTTTGTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163424656  97 + 180432695 CTG-----CATCATTCTTATGTATGTTTTCCGTTGTATGTGTGTTTGATCATTTATTTAGCCATCTTTCATTGCTAGATAGTCAAGACCCTCCCTTTTTGTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110453531 102 + 127223203 CTGCACTCTATCATTCTTATGTATGTTTTCCGTTGTATGTGTGTTTGATCATTTACTTAGCCATCTTTCATTGCTAGATAGTCAAGACCCTCCCTTTTTGTT
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40439065  75 + 149736546 ---------------------------TAGTGTTATGTGAGAGTCGGATCATTTATATCACCATCTGCCATTGCTGGAAAGTAAAGCTCTTCCCCTTCTGTT
i mm10.chr6                C 0 C 0
e canFam3.chr16             52122950 300 -  59632846 I
e calJac3.chr8              23799288   2 - 128169293 I
e nomLeu3.chr13             93114575 1770 + 110113093 I

a score=583847.000000
s hg38.chr7_GL383534v2_alt     72012 256 +    119183 GTGCCTAAAGTTTTGACCAAATATCTTTC----ttact---aagccctgtgata--ctaagccctgcgcatagcactgggacagctgggaagaaaacaga--cgctccttctcatcaggctcacagccaggcagggaagacagcttcaaggcaagaaatgaaatatagaatgaggggtgacaggtagggcAAATGTGATCTGCCATTCAGGTGGCTGGCTTAtgggatagcttgctaaaggtggcaatgctgggttaaagtgcgttc
s panTro4.chr7             143172007 256 + 161824586 GTGCCTAAAGTTTTGACcaaatatcattc----ttact---gagccctgtgata--ctaagccctgcgcatagcactgggacagctgggaagaaaacaga--cgctccttctcatcaggctcacagccaggcagggaagacagcttcaaggcaagaaatgaaatatagaacgaggggtgacaggtagggcAAATGTGATCTGCCATTCAGGTGGCTGGCTTAtgggatagcttgctaaaggtggcaatgctgggttaaagtgcgttc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138992801 254 + 157549271 GTGCCTAAAGTTTTGACCAAATATCATTC----TTACT---AAGCCCTGCGATA--CTAAGCCCTGCGCATAGCACTGGGACAGCTGGGAAGAAAACAGA--CGCTCCTTCTCATCAGGCACACAGCCAGGCAGGGAAGACAGCTTCAAGGCAAGAAATGAAATATAGAACGAAGGGTGACAGGTAAGGCAAATGTGATCTGCCATTCAGGTGGCTGGcttat--gatagcttgctaaaggtggtaatgctgggttaaagtgcgttc
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181007619 246 + 198365852 GTGCCTAAAGTTTTGACCAAATATCATTt----ttact---aagccctgtgata--ctaagccccgcgcatagcactgggacagctgggaagaaaacaga--cgttccttctcatcaggctcacagccaggcaggaaagacagcttcaaggcaagaaatgaaatatagaatgaggggagacaggtagggcAAATGTGATCTGCCATTCAGGTGGCTGGCTTAT----------GAtaaaggtggcaatgctgggttaaagtgcgttc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174755015 246 + 192294377 GTGCCTAAAGTTTTGACCAAATATCATTt----ttact---aagccctgtgata--ctaagccccgcgcatagcactgggacagctgggaagaaaacaga--cgttccttctcatcaggctcacagccaggcaggaaagacagcttcaaggcaagaaatgaaatatagaatgaggggagacaggtagggcAAATGTGATCTGCCATTCAGGTGGCTGGCTTAT----------GAtaaaggtggcaatgctgggttaaagtgcgttc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163424753 246 + 180432695 GTGCCTAAAGTTTTGACCAAATATCATTC----TTACT---AAGCCCTGTGATA--CTAAGCCCTGCGCATAGCACTGGGACAGCTGGGAAGAAAACAGA--TGTTCCTTCTCATCAGGCTCACAGCCAGGCAGGAAAGACAGCTTCAAGGCAAGAAATGAAATATAGAATGAGGGGAGACAGGTAGGGCAAATGTGATCTGCCATTCAGGTGGCTGGCTTAT----------GATAAAGGTGGCAATGCTGGGTTAAAGTGCGTTC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110453633 246 + 127223203 GTGCCTAAGGTTTTGACCAAATATCATTC----ttact---aagccctgtgata--ctaagccccgcgcatagcactgggacagctgggaagaaaacaga--cgttccttctcatcaggctcacagccaggcaggaaagacagcttcaaggcaagaaatgaaatacagaatgaggggagacaggtagggcAAATGTGATCTGCCATTCAGGTGGCTGGCTTAT----------GAtaaaggtggcaatgctgggttaaagtgcgttc
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40439140 233 + 149736546 GTGTCGTAAGTTTTGCCCGAATTTCACTc----ttactgtaaagctctgtaacc--ttcagccctgagcaca-taatgggagagatataaaaaagacagatgcgtctcttctc-tcaaactcacaacccagcaggaaaagc-------agacaataaataaaACATGGGGTAAGGGAGGGCAG---------------TCAGCCATTCTGGTTGCTGACTTGT--GATAACT-GCCGGACGTGGCCA-ACTGGGTTCAAGTGCATTC
i mm10.chr6                C 0 I 39
s canFam3.chr16             52123250 254 -  59632846 aaaaaTAAAGTGTTGGCAAAATTTCACCCTGAATTAAT---agtaccaattatatgtcatgccctgcacacagtgctggggcagccaggaagaagacaga--catcccttctcatcaggcctagagcccatcaaggagggcagctatcaggcaaggaatgaaatctagaaggaggggtGACCAGCAGGAACAA-----TCAGCTATTTGGGTTGTTGGTTTAT--GCCACAGTGCCAAAGG-GGCAATACTGGGTCAAAATGTATTG
i canFam3.chr16            I 300 C 0
e calJac3.chr8              23799288   2 - 128169293 I
e nomLeu3.chr13             93114575 1770 + 110113093 I

a score=15790.000000
s hg38.chr7_GL383534v2_alt     72268 8 +    119183 acaatttt
s panTro4.chr7             143172263 8 + 161824586 acaatttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138993055 8 + 157549271 acagtttt
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181007865 8 + 198365852 acaatttt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174755261 8 + 192294377 acaatttt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163424999 8 + 180432695 ACAATTTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110453879 8 + 127223203 acaatttt
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52123504 8 -  59632846 GTGTTTTT
i canFam3.chr16            C 0 I 1164
e mm10.chr6                 40439373 39 + 149736546 I
e calJac3.chr8              23799288 2 - 128169293 I
e nomLeu3.chr13             93114575 1770 + 110113093 I

a score=773501.000000
s hg38.chr7_GL383534v2_alt     72276 424 +    119183 aaggttctgttgattgtgctgccaaattgttgattcaccagtgtatatgagaatcaatttcatttcacccttgtctaaatgaggtattgccacttaaaattctttttgccaatttgtcagatgaaaataacattttgtttc-tgtttctgttttgtaattaaatctctaataatgttttcaaactacatattggcgaattgtggttcctcttcagcacaccgtctgtccatcatgccctttgctcgctttGTCCTTTGCTCATTTGCACCATCTGTCTGTGATGCCCAATACTCATTACCAATTTGTATGAGTTCTTTATGCAAAAGAATATTAATCTTTTGTCTGCCATAATACTTAATATTATTTAATTGTTAATATAAAGTGTTGTATGTTTCCAGTGCCATTTATTTGCTACAGAATCAGT
s panTro4.chr7             143172271 423 + 161824586 aaggttctgttgattgtgctgccaaattgttgattcaccagtgtatatgagtatcaatttcatttcacccttgtctaaatgaggtattgccacttaaaattctttttgccaatttgtcagatgaaaataacattttgtttc-tgtttctgttttgtaattaaatctctaataatgttttcaaactacatattggcgaattgtggttcctcttcagcacaccgtctgtccatcatgccctttgctcgctt-gtcctttgctcatttgcaccatctgtctgtgatgcccaatactcattaccaatttgtatgagttctttatGCAAAAGAATATTAATCTTTTGTCTGCCATAATACTTAATATTATTTAATTGTTAATATAAAGTGTTGTATGTTTCCAATGCCATTTATTTGCTACAGAATCAGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138993063 424 + 157549271 aaggttctcttgattgtgctgccaaattgttgattcaccagtgtatatgagtatcaatttcatttcacccttgtctaaatgaggtattgccacttaaaattctttttgccaatttgtcagatgaaaataacattttgtttcatgtttatgttttgtaattaaatctctaatcatgttttcaaactacatattggcgaactgtggttcctcttcagcgcaccgtctgtccgtgatgccctttgctcgctt-gtcctttgCTCATTTCCACCATCTGTCTGTGATGCCCAATACTCATTACCAATTTGTATGAGTTCTTTATGCAAAAGAATATTAATCTTTTGTCTGGCATAATACTTAATATTATTTAATTGTTAATATAATGTGTTGTATGTTTCCAGTGCCATTTATTTGCTACATAATCAGT
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181007873 424 + 198365852 aaggttctcttgattgtgctgccaaattgttgattcaccagtgtatatgagtatcagtttcatttcacccttgtctaaatgaggtattgccacttaaaattgtttttgccaatttgtcagaggaaaataacattttgtttcatgtttatgttttgtaattaaatctctgatcatgttttcaaactacatgttggcgaattgtggttcctcttcagcacaccgtctgtccgtgatgccctttgctcgctt-gtcctttgctcatttgcactgtctttctgtgatgcccgatactcattaccaatctgtatgagttctttatgcataagaatattaaTCTTTTGTCTGGCataatatttaatattatttaattgttaatataatGTATTGTATGTTTCCAATGCCATTTATTTGCTACATAATCAGT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174755269 424 + 192294377 aaggttctcttgattgtgctgccaaattgttgattcaccagtgtatatgagtatcagtttcatttcacccttgtctaaatgaggtattgccacttaaaattgtttttgccaatttgtcagaggaaaataacattttgtttcatgtttatgttttgtaattaaatctctgatcatgttttcaaactacatgttggcgaattgtggttcctcttcagcacaccgtctgtccgtgatgccctttgctcgctt-gtcctttgctcatttgcactgtctttctgtgatgcccgatactcattaccaatctgtatgagttctttatgcataagaatattaaTCTTTTGTCTGGCATAATATTTAATATTATTTAATTGTTAATATAATGTATTGTATGTTTCCAATGCCATTTATTTGCTACATAATCAGt
i macFas5.chr3             C 0 I 333
s papAnu2.chr3             163425007 424 + 180432695 AAGGTTCTCTTGATTGTGCTGCCAAATTGTTGATTCACCAGTGTATATGAGTATCAGTTTCATTTCACCCTTGTCTAAATGAGGTATTGCCACTTAAAATGGTTTTTGCCAATTTATCagaggaaaataacattttgtttcatgtttatGTTTTGTAACTAAATCTCTAATCATGTTTTCAAACTACATGTTGGCGAATTGTGGTTCCTCTTCAGCACACCGTCTGTCCGTGATGCCCTTTGCTCACTT-GTCCTTTGCTCATTTGCACTGTCTTTCTGTGATACCCGATACTCATTACCAATCTGTATGAGTTCTTTATGCGTAAGAATATTAATCTTTTGTCTggcataatatttaatattatttaattgttAATATAATGTATTGTATGTTTCCAATGCCATTTATTTGCTACATAATcagt
i papAnu2.chr3             C 0 I 325
s chlSab2.chr21            110453887 424 + 127223203 aaggttctcttaattgtgctgccaaattgttgattcaccagtgtatatgagtatcagtttcatttcacccttgtctaaatgaggtattgctacttaaaattgtttttgccaatttgtcagaggaaaataacattttgtttcatgtttatgttttgtaattaaatctctaatcatgttttcaaactacatgttggtgaattgtggttcctcttcagcacaccgtctgtccgtgatgccctttgcttgctt-gtccttcgctcatttgcactgtctttctgtgatgcccgatactcattaccaatctgtatgagttctttatgcataagaatattaaTCTTTTGTCTGGCATAATATTTAATATTATTTAATTGTTAATATAATGTATTGTATGTTTCCAATGCCATGTATTTGCTACATAATCAGT
i chlSab2.chr21            C 0 I 301
e mm10.chr6                 40439373  39 + 149736546 I
e canFam3.chr16             52123512 1164 -  59632846 I
e calJac3.chr8              23799288   2 - 128169293 I
e nomLeu3.chr13             93114575 1770 + 110113093 I

a score=28920.000000
s hg38.chr7_GL383534v2_alt     72700 16 +    119183 TTTCTTGTGACTTTTT
s panTro4.chr7             143172694 16 + 161824586 TTTCTTGTGACTTTTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138993487 16 + 157549271 TTTCTTGTGACTTTTT
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181008297 16 + 198365852 TTTTTTGTGAtttttt
i rheMac3.chr3             C 0 M 525
s macFas5.chr3             174756026 16 + 192294377 TTTTTTGTGACTTTTT
i macFas5.chr3             I 333 C 0
s papAnu2.chr3             163425756 16 + 180432695 ttttttgtgacttttt
i papAnu2.chr3             I 325 C 0
s chlSab2.chr21            110454612 16 + 127223203 ttttttgtgacttttt
i chlSab2.chr21            I 301 C 0
e mm10.chr6                 40439373 39 + 149736546 I
e canFam3.chr16             52123512 1164 -  59632846 I
e calJac3.chr8              23799288  2 - 128169293 I
e nomLeu3.chr13             93114575 1770 + 110113093 I

a score=261353.000000
s hg38.chr7_GL383534v2_alt     72716 207 +    119183 ATGTTGCTTTGACATTTAGAAAGTTGGTCCCCCA-CAAAAATTTGATCAACATTCACTTCA-------tttttatttttttgagacggagtcttgctctgttgcccaggctggggtgcactggcacgatctcgactcactgcaacctccgcatcccaggttcaagtgattctcctgccttagcctccctagcagctgggattacaggtgtatgcc
s panTro4.chr7             143172710 207 + 161824586 ATGTTGCTTTGACATTTAGAAAGTTGGTCCCCCA-CAAAAATTTGATCAACATTCACTTCA-------tttttatttttttgagatggagtcttgctctgttgcccaggctggggtgcactggcacgatcttgactcactgcaacctccgcatcccgggttcaagtgattctcctgccttagcctccctagcagctgggattacaggtgtacgtc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138993503 207 + 157549271 ATGTTGCTTTGACATTTAGAAAGTTGATCCCCCA-CAAAAATTTGATCAACATTCACttta-------tttttatttttttgagacgaagtcttgctctgttgcccaggctggggtgcactggcacgatctaggcttactgcaacctccgcatccagggttcaagttattctcctgccttagcctccctaatagctgggattacaggtgtacacc
i ponAbe2.chr7             C 0 C 0
s macFas5.chr3             174756042 215 + 192294377 ATGTTGCTTTGACATTTAGAAAGTTGGTCCCCCACCAAAAATTTGATCAACATTTACtttatttttattttttattttttcgagacagagtcttgctctgttgcccaggctggagtgcagtggcacgatcttgggtcactgcaacctccgcatcccgggttcaagcaattctcctgccttagccccactagtagctgggattacaggtgtacgcc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163425772 215 + 180432695 atgtTGCTTTGACATTTAGAAAGTTGGTCCCCCACCAAAAATTTGATcaacatttactttatttttattttttattttttcgagacagagtcttgctctgttgcccaggctggagtgcagtggcacgatcttggctcactgcaacctccgcatcccgggttcaagcaattctcctgccttagccccactagtagctgggattacaggtgtacgcc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110454628 215 + 127223203 atgttgctttgacatttagaaagttggtcccccaccaaaaatttgatcaacatttactttatttttattttttattttttcgagacagagtcttgccctgttgcccaggctggagtgcagtggcacgatcttggctcactgcaacctctgcatcccaggttcaagcaattctcctgccttagccccactagtagctgggattacaggtgtatgcc
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40439373  39 + 149736546 I
e canFam3.chr16             52123512 1164 -  59632846 I
e calJac3.chr8              23799288   2 - 128169293 I
e rheMac3.chr3             181008313 525 + 198365852 M
e nomLeu3.chr13             93114575 1770 + 110113093 I

a score=91463.000000
s hg38.chr7_GL383534v2_alt     72923 52 +    119183 accatgtccagctaattgatgta-tttttaatagagatggggttttgccatgc
s panTro4.chr7             143172917 52 + 161824586 accatgtccagctaattgatgta-tttttaatagagatggggttttgccatgt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138993710 53 + 157549271 accatgcccagctaatttatgtattttttagtagagacggggttttgccatgt
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181008856 52 + 198365852 accatgcccagctaatttatgta-tttttagtagagacggggttttgccttgt
i rheMac3.chr3             M 525 C 0
s macFas5.chr3             174756257 52 + 192294377 accatgcccagctaatttatgta-tttttagtagagacggggttttgccttgt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163425987 52 + 180432695 accatgcccagctaatttatgta-tttttagtagagacggggttttgccttgt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110454843 52 + 127223203 accatgcccagctaatttatgta-tttttagtagagacggggttttgccttgt
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40439373 39 + 149736546 I
e canFam3.chr16             52123512 1164 -  59632846 I
e calJac3.chr8              23799288  2 - 128169293 I
e nomLeu3.chr13             93114575 1770 + 110113093 I

a score=219649.000000
s hg38.chr7_GL383534v2_alt     72975 91 +    119183 tggccaggctggtctcg-aactcctgacctccagtgatctgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgtgcc
s panTro4.chr7             143172969 91 + 161824586 tggccaggctggtctcg-aactcctgacctccagtgatctgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgtgcc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138993763 91 + 157549271 tggccaggctggtctgg-aactcctgacctccagtgatctgcctgcctcagcgtcccaaagtgctgggattacaggtgtgaaccaccgcgcc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93116345 92 + 110113093 tggccaggctggtcttgaaactcctgagctcaagtgatctgcccgcctcagcctcccaaagtgctgggattataggtgtgagccaccatgcc
i nomLeu3.chr13            I 1770 C 0
s rheMac3.chr3             181008908 91 + 198365852 tggccaggctggtctcg-aactcctgacctcaagtgatctgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgcacc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174756309 91 + 192294377 tggccaggctggtctcg-aactcctgacctcaagtgatctgcccgcctcagcctcccaaactgctgggattacaggtgtgagccactgcacc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163426039 91 + 180432695 tggccaggctggtctcg-aactcctgacctcaagtgatctgcccacctcagcctcccaaagtgctgggattacaggtgtgagccactgcacc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110454895 91 + 127223203 tggccaggatggtctcg-aactcctgacctcaagtgatctgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgcacc
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40439373 39 + 149736546 I
e canFam3.chr16             52123512 1164 -  59632846 I
e calJac3.chr8              23799288  2 - 128169293 I

a score=10339.000000
s hg38.chr7_GL383534v2_alt     73066 5 +    119183 tagcT
s panTro4.chr7             143173060 5 + 161824586 cagcT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138993854 5 + 157549271 tggcc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93116437 5 + 110113093 cggcc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181008999 5 + 198365852 cggcc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174756400 5 + 192294377 cggcc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163426130 5 + 180432695 cggcc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110454986 5 + 127223203 cggcc
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40439412 5 + 149736546 TGGTT
i mm10.chr6                I 39 C 0
e canFam3.chr16             52123512 1164 -  59632846 I
e calJac3.chr8              23799288 2 - 128169293 I

a score=725314.000000
s hg38.chr7_GL383534v2_alt     73071 261 +    119183 CAC------ttttttttttttt-tttggttat---ttataaattgatttcctacatttaatttcttaatctattCAATGCCTATATTGAT-AT---------GTGGTAAGAAGTGAGACTAAAAATTTT-GCGTTGAACAGTTAATCAATAATTCCTGCATGACTTATTGAATAGTTATTTCACTTCCTATGACTTGTAATTCTCCTTTAAGT-ACAATAGTAAATTTCTG-------------TATGT----ATCACTCACCGCTGAC-CCgtctgttcttacactagtaccacactaat
s panTro4.chr7             143173065 258 + 161824586 CAC------TTTTTTTTTTTTT----GGTTAt---ttataaattgatttcctacatttaatttcttaatctattcaatgcctatattgat-at---------gtggtaagaagtgagactaaaaatttt-gcattgaacagttaatcaataattcctgcatgacttattgaatagttatttcacttcctatgacttgtaattctcctttaagt-acaatagtaaatttctg-------------tatgt----atcactcaccgctgac-ccgtctgttcttacactagtaccacactaat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138993859 262 + 157549271 CAC------TTTTTTTTTTTTTTTTTGGTTAT---TTATAAATTGATTTCCTACATTTAATTTCTTAATCTATTCAATGCCTATATTGAT-AT---------GTGGTAAGAAGTGAGACTAAAAATTTT-GCATTGAACAGTTAATCAATAATTCCTGCATGACTTACTGAATAGTTATTTCACTTCCTATGACTTGTAATTCTCCTTTAAGT-ACAATAGTAAATTTCTG-------------TATGT----ATCACTCATCACTGAC-CCgtctgttcttacactagtaccacactaat
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93116442 262 + 110113093 CAC------TTTTTAAATTTTTTTTTGGTTAT---TTATAAATTGATTTCCTACATTTAATTTCTTAATCTATTCAATGCCTATATTGAT-AT---------GTGGTAAGAGGTGAGACTAACAATTTT-GCATTGAACAGTTAATCAATAATTCCTACATGACCTATTGAATAGCTATTTCACTTCCTATGACTTATAATTCTCCTTTAAGT-ACAATAGTAAATTCCTG-------------TATGT----ATCACTCAccattgac-ctgtctgttcttacactagtaccacactaat
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181009004 264 + 198365852 CTC----TTTTTTTTTTTTCTTTTTTGGTTAT---TTATAAATTGATTTCCTACATTTAATTTCTTAATCTATTCAATGCCTATATTGAT-AT---------GTGGTAAGAAGTAAGACTAAAAATTTT-GCATTGAACAGTTAATCAATAATTCCTACATGACTTATTGAATAGTTATTTCACTTCCTATGACTTATAATTCTCCTTTAAAT-ACAATAGTAAATTTCTG-------------TATGT----ATCACTCAccattgac-ctgtctgttcttacactagtaccacactaat
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174756405 268 + 192294377 CTCttttttttttttttttcttttttggttat---ttataaattgatttcctacatttaatttcttaatctattCAATGCCTATATTGAT-AT---------GTGGTAAGAAGTAAGACTAAAAATTTT-GCATTGAACAGTTAATCAATAATTCCTACATGACTTATTGAATAGTTATTTCACTTCCTATGACTTATAATTCTCCTTTAAAT-ACAATAGTAAATTTCTG-------------TATGT----ATCACTCAccattgac-ctgtctgttcttacactagtaccacactaat
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163426135 262 + 180432695 ctc------ttttttttttcttttttggttat---ttataaattgatttcctacatttaatttattaatctATTCAATGCCTATATTGAT-AC---------GTGGTAAGAAGTAAGACTAAAAATTTT-GCATTGAACAGTTAATCAATAATTCCTACATGACTtattgaatagttatttcacTTCCTATGACTTATAATTCTCCTTTAAAT-ACAATAGTAAATTTCTG-------------TATGT----ATCACTCACCATTGAC-CTGTCTGTTCTTACACTAGTACCACACtaat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110454991 258 + 127223203 ctc------ttttttttttcttttttggttat---ttataaattgatttcctacatttaatttcttaatctattcaatgcctatattgat-ac---------gtggtaag----aagactaaaaatttt-gcattgaacagttaatcaataattcctacatgacttattgaatagttatttcacttcctatgacttataattctcctttaaat-acaatagtaaatttctg-------------tatgt----atcactcaccattgac-ctgtctgttcttacactagtaccacactaat
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40439417 270 + 149736546 GAA------TTTCATTTTTTTT-TCAAAATATGTGCTAGAAATTTGTCTTTCCTCTTTAGACCAT--GCCTGTCCATTAACTGTCTTCAT-CTTACCCAGTCTTGCTATGATGTGATGCTTACCATTTTCTCACTGACCAGCTTAT-----ATTTGTGTGTG-CTTATAGAATTATTCCTTTACTTTCTCTGAGTTGTAA-TCCACTTAGAGC-ACAATGTTAAATTACTA-------------CGTTTGCTGATTAGGCATTTTAGCTGTTGTCTATTTTTCCACGACATCCACACTAat
i mm10.chr6                C 0 I 97
s canFam3.chr16             52124676 262 -  59632846 -------cattcacttttattctttaaggtat---ttatacattggttttgcacatttaatttcttaatctaatcagtgtctatattgataat---------gtgatatgaagtgagactctaaaattt-ttattgaatagttaaccaataattgctataccac-tattgagtaattctttcaattcctatgatttataattcccctttaaatgataatattgaattattggtatttactaatttatgt----attcttcaccattgat-atgtctattcct----------caaagt---
i canFam3.chr16            I 1164 C 0
e calJac3.chr8              23799288   2 - 128169293 I

a score=959533.000000
s hg38.chr7_GL383534v2_alt     73332 384 +    119183 tattatacatatattttaaacttttatttccacgacaagtagtcttgttcctttactgtc--ttttaa-aaaaa-ttattcaccta-ttctttgactattatttttccatgtgaa----ctttaaaatcattttatctaatttctcaaaaaa-----gtgagag--ttttcattcaaattgcatgagaaatatatatttactgtatataaagaaagaaga--aacagcatctttctatcattgagtcatttcattctatCTTGCAGGAACAGTGTTCCATAGAGATAAGGAATAGGTAGCTCTGCATTCATAATTAATATGCATAATTAGTTGACCAAGACAAATACTG-GTGATCCAGACAAGAATCCAAACTGTGAGACAAGCCGAGGTGTTGCAGGGATG
s panTro4.chr7             143173323 385 + 161824586 tattatacatatattttaaacttttatttccacgacaagtagtcttgttcctttactgtc--ttttaa-aaaaaattattcaccta-ttctttgactattatttttccatgtgaa----ctttaaaatcattttatctaatttctcaaaaaa-----gtgagag--ttttcattcaaattgcatgagaaatatatatttactgtatataaagaaagaaga--aacagcatctttctatcattgagtcatttcattctatCTTGCAGGAACAGTGTTCCATAGAGATAAGGAATAGGTAGCTCTGCATTCATAATTAACATGCATAATTAGTTGACCAAGACAAATACTG-GTGATCCAGACAAGAATCCAAACTGTGAGACAAGCCGAGGTGTTGCAGGGATG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138994121 382 + 157549271 tattatacatatattttaaacttttatttccatgacaagtagtcttgttcctttactgtc--ttttaa-aaaaa-ttattcaccta-ttctttgactattatttttccatgtgaa----ctttaaaatcattttatctaatttctcaaaaaa-----gt--gag--ttttcattcaaattgcatGAGAAATATATATTTACTGTATATAAAGAAAGAAGA--AACAGCATCTTTCTATCATTGAGTCATTTTATTCTATCTTTCAGGAACAGTGTTCCATAGAGGTAAGGAATAGGTAGCTCTGCATTCATAATTAATATGCACAATTAGTTGACCAAGACAAATACTG-GTGATCCAGACAAGAATCCAAATTGTGAGACAAGCCGAGGTGTTGCAGGGATG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93116704 380 + 110113093 tgctatac----attttaaacttttatttccaggacaagtagtcttgttcctttactctcttttttaa-aaaaa-ttattcagcta-ttctttgactattatttttccatgtgaa----ctttaaaatcgttttatctaatttctcaaaaaa-----gt--gag--ttttcattcaaattgcatGAGAAATATATATTTACTGTATGTAAAGAAGGAAGA--AACAGCATCTTTCTATCATTGAGTCATTTTGTTCTATCTTGCAGGAACAGTGTTCCATAGAGGTAAGGAATAGGTAGCTCTGCATTCATAATTAATATGCATAATTAGTTGAGCAAGACAAATACTG-GTGATCCAGACAGGAATCCAAATTGTGAGACAAGCCAAGGTGTTGCAGGGATG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181009268 364 + 198365852 tattatacatatattttaaacttttatttccatgacaagtagtcttgttcctttactctc--t------aaaaa-ttattcagcca-ttctttgactattatttttccatgtgaa----ctttaaaatcattttatctaatttctcaaaaaa-----gt--gag--ttttcattcaaattgcatGAGAAATACATATTCACCGTATGTAAGGCAGGAAGA--AACAGCGTCTTTCTATCACTGAGTCATTTTATTCTATCTTGCAGGAATAGTGTTCCATACAGGTAAGGAATAGGTAGCTCTGCATTCATCATTAATATGCATAATTAGT-------------TCCTG-ATGATCCAGACAGGAATCCAAATTGTGAGGCAAGCTGAGGTGTTACAGGGATG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174756673 364 + 192294377 tattatacatatattttaaacttttatttccatgacaagtagtcttgttcctttactctc--t------aaaaa-ttattcagcca-ttctttgactattatttttccatgtgaa----ctttaaaatcattttatctaatttctcaaaaaa-----gt--gag--ttttcattcaaattgcatGAGAAATACATATTCACCGTATGTAAGGCAGGAAGA--AACAGCGTCTTTCTATCACTGAGTCATTTTATTCTATCTTGCAGGAATAGTGTTCCATACAGGTAAGGAATAGGTAGCTCTGCATTCATCATTAATATGCATAATTAGT-------------TCCTG-ATGATCCAGACAGGAATCCAAATTGTGAGGCAAGCTGAGGTGTTACAGGGATG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163426397 362 + 180432695 tattatacatatattttaaacttttatttccatGACAAGTAGTCTTGTTCCTTTACTCTC--T------AAAAA-TTATTCAGCCA-TTCTTTGACTATTAtttttccatgtgaa----ctttaaaatcattttatctaATTTCTCAAAAAA-----GT--GAG--TTTTCATTCAAATTGCATGAGAAATACATATTCACCGTATGTAAGGCAGGAAGA--AACAGCATCTTTCTATCACTGAGTCATTTTATTCTATCTTGCAGGAATAGTGTTCCATAGAGGTAAGGAATAGGTAGCTCTGCATTCATCATTAATATGCATAATTAGT-------------TCCTG-ATGATCCAGACAGGAATCCAAATTGTGAGGCAAGCTGA-GTGTTACA-GGATG
i papAnu2.chr3             C 0 I 305
s chlSab2.chr21            110455249 384 + 127223203 tattatacatatattttaaacttttacttccatgacaagtagtcttgttcctttactctc--ttaaaaaaaaaa-ttattcagcca-ttctttgactattacttttccatgtgaa----ctttaaaatcattttatctaatttctcaaaaaa-----gt--gag--ttttcattcaaattgcatGAGAAATACATATTCACCATATGTGAGGCAGGAAGATTAACAGCGTCTTTCTATCACCAAGTCATTTTATTCTATCTTGCAGGAATAGTGTTCCATAGAGGTAAGGAATAGGTAGCTCTGCATTCATCATTAATATGCATAATTAGTTG-CCAAGACAAATACTG-ATGATCCAGACAAGAATCCAAATTGTGAGGCAAGCTGAGGTATTACAGGGATG
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52124938 369 -  59632846 ------------tttgtaagtttttatttctagcagaggtagtcttctcttttcactctt--t---aa-aaaaa-ttcttcagctatttctttgacaattatttctccatgtgaaaattatttaaaatgattctatccagtttaaaaaaaaaaacctgt--gagctttttcactcaaactgcacgagttttacatatttact----------agggaaaa--accagtatctgtatgtgactaagccatttaattcTCTCTTTGAGGATTAGTCTTCCATCCAGCTAAGGAATAGGTTACACTGCCTCCGTGATCAAGCTGCATAGTTAGTTGACCGGAGTCAATATTGAGTGGTCCAGACAGGAGTCCAGACTGTGGGACAAACTGAAGTGTAACA-GGATG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40439687  97 + 149736546 I
e calJac3.chr8              23799288   2 - 128169293 I

a score=11244.000000
s hg38.chr7_GL383534v2_alt     73716 5 +    119183 AAATT
s panTro4.chr7             143173708 5 + 161824586 AAATT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138994503 5 + 157549271 AAATT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93117084 5 + 110113093 AAATT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181009632 5 + 198365852 AAATT
i rheMac3.chr3             C 0 I 307
s macFas5.chr3             174757037 5 + 192294377 AAATT
i macFas5.chr3             C 0 I 304
s papAnu2.chr3             163427064 3 + 180432695 aaa--
i papAnu2.chr3             I 305 C 0
s chlSab2.chr21            110455633 5 + 127223203 AAATT
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52125307 5 -  59632846 AAATT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40439687 97 + 149736546 I
e calJac3.chr8              23799288 2 - 128169293 I

a score=6552.000000
s hg38.chr7_GL383534v2_alt     73721 2 +    119183 AA
s panTro4.chr7             143173713 2 + 161824586 AA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138994508 2 + 157549271 AA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93117089 2 + 110113093 AA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181009944 2 + 198365852 aa
i rheMac3.chr3             I 307 C 0
s macFas5.chr3             174757346 2 + 192294377 aa
i macFas5.chr3             I 304 C 0
s papAnu2.chr3             163427067 2 + 180432695 aa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110455638 2 + 127223203 AA
i chlSab2.chr21            C 0 I 307
s canFam3.chr16             52125312 2 -  59632846 AA
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40439687 97 + 149736546 I
e calJac3.chr8              23799288 2 - 128169293 I

a score=341231.000000
s hg38.chr7_GL383534v2_alt     73723 136 +    119183 GAATGGACA-----AGATGAAGAAAATAATCTTTGTAGTGGTCTAAGGA--ATATCTATACCCTTATCTGTCCTGTGAATTGAAGTTCCGCAGTCAAGATTCTGAGAGGACCCAAAGCCCAGTGCCTACAGGGACATCCTGGG
s panTro4.chr7             143173715 136 + 161824586 GAATGGACA-----AGATGAAGAAAATAATCTTTGTAGTGGTCTAAGGA--ATATCTATACCCTTATCTGTCCTGTGAATTGAAGTTCTGCAGTCAAGATTCTGAGAGGACCCAAAGCCCAGTGCCTACAGGGACATCCTGGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138994510 114 + 157549271 GAATGGACA-----AGATGAAGAAAATAATCTTCGTAGTGGTCTAAGGA--ATATCTATGCCCTTATCTGTCCCGTGAATTGAAGTTCTGCAGTC-AGATTCTGAGAGGACCCGAAGCCC---------------------GG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93117091 135 + 110113093 GAATGGACA-----AGATGAAGAAAATAATCTTTGTAGTGGTCTAAGGA--ATATCTATACCCTTATCTGTCCTGTGAATTGAAGTTCCACAGTC-AGATTCTGAGAGGACCCAAAGCCCAGTGCATCCAGGGACATCCTGGG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181009946 134 + 198365852 gaaTGGACA-----AGATGAAG-AAATAATCTTTGTAGTGGTCTAAGGA--ATATCTATACCCTTATCTGTCCTGGGAATTGAAGTTCCACAGTC-AGATTCTGAGAGTACCAAAAGCCCAGTGCATCCAGGGACTTCCTGGG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174757348 134 + 192294377 gaaTGGACA-----AGATGAAG-AAATAATCTTTGTAGTGGTCTAAGGA--ATATCTATACCCTTATCTGTCCTGGGAATTGAAGTTCCACAGTC-AGATTCTGAGAGTACCAAAAGCCCAGTGCATCCAGGGACTTCCTGGG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163427069 134 + 180432695 gaatggaca-----agATGAAG-AAATAATCTTTGTAGTGGTCTAAGGA--ATATCTATACCCTTATCTGTCCTGGGAATTGAAGTTCCACAGTC-AGATTCTGAGAGTACCAAAAGCCCAGTGCATCCAGGGACTTCCTGGG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110455947 134 + 127223203 GAATGGACA-----AGATGAAG-AAATAATCTTTGTAGTGGTCTAAGGA--ATATCTATACCCTTATCTGTCCTGGGAATTGAAGTTCCACAGTC-AGATTCTGAGAGTACCAAAAGCCCAGTGCATCCAGGGACTTCCTGGG
i chlSab2.chr21            I 307 C 0
s canFam3.chr16             52125314 135 -  59632846 GAATGTGCATAAAGGGATAAAA-AAATAGTCTTCCTAATGGTGTAAGGAGGATCTCTATATGCTTATCTCTCCTGTGAACTTAAGTCCCAC-----ATATCCT--GAGGACCCAAAGCTCTGAGCATCCAGAGACATCCTGGG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40439687  97 + 149736546 I
e calJac3.chr8              23799288   2 - 128169293 I

a score=763994.000000
s hg38.chr7_GL383534v2_alt     73859 227 +    119183 -----TGCATCCGCTCCAGTCTCCCTATTTCCTAACATCCACTTTATACATTAGACCACACTAGTTGTAGTATCAGCCCTGTCTGCACTAGTATTTCCT--------TC-------CCAAGTCATCTGTGCTACAGGTGCTTGTTGGTGTGGCCCAAGTTTAAAGCACAGTAAATCATATCCCGCAGAGGTTATATTCAAGTTGTGCCAGAAATGGTATAGAGATTCATAGAATGACGCAGATTTTA
s panTro4.chr7             143173851 227 + 161824586 -----TGCATCCGCTCCAGTCTCCCTATTTCCTAACATCCACTTTATACATTAGACCACACTAGTTGTAGTATCAGCCCTGTCTGCACTAGTATTTCCT--------TC-------CCAAGTCATCTGTGCTACAGGTGCTTGTTGGTGTGGCCCAAGTTTAAAGCACAGTAAATCATATCCCGCAGAGGTTATATTCAAGTTGTGCCAGAAATGGTATAGAGATTCATAGAATGACGTAGatttaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138994624 227 + 157549271 -----TGCATCCGCTCCAGTCTCCCTATTTCCTAACATCCACTTTATACATTAGACCACACTAGTTGTAATATCAGCCCTGTCTGCACCAGTATTTCCT--------TC-------CCAAGTCATCTGTGCTACAGGTGCTTGTTGGTGTGGCCCAAGTTTAAAGCACAGTAAATCATATGCCGCAAAGGTTACATTCAAGTTGTGCCAGAAATGGTATAGAGATTCATAGAATGACGTAGatttta
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93117226 227 + 110113093 -----TGCATCTGCTCCAGTCTCCCTGTTTCCTAACATCTACTTTATACATTAGACCACACTAGTTGTAATATCAGCCCTGTCTGCACTAGTATTTCCT--------TC-------CCAAGTCATCTGTGCTACAGGTGCTTGTTGGTGTGGCCCAAATTTAAAGCACAGTAAATCATATCCCGCAGAGCTTACATTCAAGTTGTGCCAGAAATGGTATAGAGATTCATAAAATGATGTAGATTTTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181010080 227 + 198365852 -----TGCATCTGCTCCAGTCTCCCTATTTCCTAACATCTACTTTACACATTAGACCACACTAGTCATAATATCAGCCCTGTCTGCACTAGTATTTCTT--------TC-------CCAAGTCATCTGTGCTACAGGTGCTTGTTGGCGTGGCCCAAGTTTAAAGCACAGTAAATCATATCCTGCAGAGGTTACATTCAGGTTGTGCCAGAAATGGTATAGGGATTCATAAAATGATGTAGATTTTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174757482 227 + 192294377 -----TGCATCTGCTCCAGTCTCCCTATTTCCTAACATCTACTTTACACATTAGACCACACTAGTCATAATATCAGCCCTGTCTGCACTAGTATTTCTT--------TC-------CCAAGTCATCTGTGCTACAGGTGCTTGTTGGCGTGGCCCAAGTTTAAAGCACAGTAAATCATATCCTGCAGAGGTTACATTCAGGTTGTGCCAGAAATGGTATAGGGATTCATAAAATGATGTAGATTTTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163427203 227 + 180432695 -----TGCATCTGCTCCAGTCTCCCTATTTCCTAACATCTACTTTATACATTAGACCACACTAGTCATAATATCAGCCCTGTCTGCACTAGTATTTCTT--------TC-------CCAAGTCATCTGTGCTACAGGTGCTTGTTGGCGTGGCCCAAGTTTAAAGCACAGTAAATCATATCCTGCAGAGGTTACATTCAGGTTGTGCCAGAAATGGTATAGGGATTCATAAAATGATGTAGATTTTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110456081 227 + 127223203 -----TGCATCTGCTCCAGTCTCCCTATTTCCTAACATCTACTTTCTACATTAGACCACACTAGTCATAATATCAGCCCTGTCTGCACTAGTATTTCTT--------TC-------CCAAGTCATCTGTGCTACAGGTGCTTGTTGGCGTGGCCCAAGTTTAAAGCACAGCAAATCATATCCCGCAGAGGTTACATTCAGGTTGTGCCAGAAATGGTATAGGGATTCATAAAATGATGCAGATTTTA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23799290 234 - 128169293 -----TGCATCTGCTCCAGCCTCCCTGTTTCCTAACATCGCAGTTGTACGTTAGAGCACATCAGTTGTAGTATCAGCCCTGTCTGCACTAGTATTTCCT--------TCAGCCCCACCAACTCATCTGTGCTACAGGTGCTTGTTGGTGTGGCCCAAGTTTAAAGCACAGTATGTCACATCCTGCAGAGATTACATTTATGTTGTGTCAGAAATGGCATAGGGATTCATAAAATGACGTAGACTTTC
i calJac3.chr8             I 2 I 303
s canFam3.chr16             52125449 230 -  59632846 AAATCTG-ATCTGTTTCAGATTCCTGCCTTCCTCGCGTCTACTGTATGCATTAGACCATAATAGCTATAACTGCAGCCTCACCTGCTC---TATTTCCTTTCACTCCTC-------CCAGATTGTCTGTGCTGCAGGAATTTCTTGGTTTGGCCCAAGCTGAAAACACGTTAAATCATACACCACAGAGGCTGAGCTCAGGTTGAGGCAGAAATGCT-TAGGGGTTAACAGAATGA-ATAGTT----
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40439687  97 + 149736546 I

a score=90086.000000
s hg38.chr7_GL383534v2_alt     74086 26 +    119183 AAAATTAATACATTATTTAAAATCAG
s panTro4.chr7             143174078 26 + 161824586 aaaattaatacattatttaaaatCAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138994851 26 + 157549271 aaaattaatacattatttaaaatCAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93117453 26 + 110113093 AAAATTAACACATTATTTAAAATCAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181010307 26 + 198365852 AGAATTAATACATTATTTAAAATCTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174757709 26 + 192294377 AGAATTAATACATTATTTAAAATCTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163427430 26 + 180432695 AGaattaatacattatttaaaatctg
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110456308 26 + 127223203 AGAATTAATACATTATTTAAAATCTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23799827 26 - 128169293 AAAATTACTACATTATTTAAAATCAG
i calJac3.chr8             I 303 C 0
s canFam3.chr16             52125679 26 -  59632846 AAAATTACTGAGTTATCTAAAATCAg
i canFam3.chr16            C 0 I 198
e mm10.chr6                 40439687 97 + 149736546 I

a score=50476.000000
s hg38.chr7_GL383534v2_alt     74112 18 +    119183 CACATCCCTCCCTTTTAG
s panTro4.chr7             143174104 18 + 161824586 CACATCCCTCCCTTTTAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138994877 18 + 157549271 CACATCCCTCCCTTTTAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93117479 18 + 110113093 GACATCCCTCCCTTTTAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181010333 18 + 198365852 CAAATCCCTCCCTTTTAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174757735 18 + 192294377 CAAATCCCTCCCTTTTAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163427456 18 + 180432695 CAAATCTCTCCCTTTTAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110456334 18 + 127223203 CAAATCCCTCCCTTTTAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23799853 18 - 128169293 TATATACCTTCCTTTTAG
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40439687 97 + 149736546 I
e canFam3.chr16             52125705 198 -  59632846 I

a score=681901.000000
s hg38.chr7_GL383534v2_alt     74130 206 +    119183 TCCTTTTAAATTTGTATTGGGGCTGAAAATT--AAGTTTGAAACCTCATAAAAGCTATCCATTCTGCAGTGGTGTACATCATGGGGATAGATAGAATATTTAACATACttgattcactctggacatatttattgagtctaccgtgtgccaagacttgatccaagtaatggaaatagagcatcgaataagagttaagcccctctcctca
s panTro4.chr7             143174122 206 + 161824586 TCCTTTTAAATTTGTATTGGGGCTGAAAATT--AAGTTTGAAACCTCATAAAAGCTATCCATTCTGCAGTGGTGTACATCATGGGGATAGATAGAATATTTAACATACttgattcactctggacatatttattgagtctaccgtgtgccaagacttgatccaagtaatggaaatagagcatcgaataagagttaagcctctctcctca
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138994895 206 + 157549271 TCCTTTTAAATTTGTATTGGGGCTGAAAATT--AAGTTTGAAACCTCATAAAAGCTATCCATTCTGCAGTGGTGTACATCATGGGGATAGATAGAATATTTAACATACttgattcactctggacatatttattgagtctactgtgtgccaagacttgatccaggtaatggaaatagagcaccgaataagagttaagcccctctcctca
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93117497 206 + 110113093 TCCTTTTAAATTTGTATTGGGGATGAAAATT--AAGTTTGAAACCTCATAAAAGCTATCCATTCTGCAGTGGTGTCCATCATGGGGATAGATAGAATATATAACATACttgattcactctggatgtatttattgagtctaccgtgtgccaagacttgatccaggtaatggaaatagagcatcgaataagagttaagcccctctcctca
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181010351 206 + 198365852 TCCTCTCCAATTTGTATTGGGGCTGAAAATT--AAGTTTGAAACCTCATAAAAGCTATCCATTCTGCAGTGGTGTCCATCATGGGGATAGATAGAATATATAACATACttgattcactctggacatgtttattgagtctaccatgtgccaagacttgatccagataatggagatagagcatcgaataagagttaagcccctctcctca
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174757753 206 + 192294377 TCCTCTTCAATTTGTATTGGGGCTGAAAATT--AAGTTTGAAACCTCATAAAAGCTATCCATTCTGCAGTGGTGTCCATCATGGGGATAGATAGAATATATAACATACttgattcactctggacatgtttattgagtctaccatgtgccaagacttgatccagataatggagatagagcatcgaataagagttaagcccctctcctca
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163427474 206 + 180432695 TCCTCTTCAATTTGTATTGGGGCTGAAAATT--AAGTTTGAAACCTCATAAAAGCTATCCATTCTGCAGTGGTGTCCATCATGGGGATAGATAGAATATATAACATACTTGATTCACTCTGGACATGTTTATTGAGTCTACCATGGGCCAAGACTTGATCCAGATAATGGAGATAGAGCATCGAATAAGAGTTAAGCCCCTCTCCTCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110456352 206 + 127223203 TCCTCTTCAATTTGTATTGGGGCTGAAAATT--AAGTTGGAAACCTCATAAAAGCTATCCATTCTGCAGTGGTGTCCATCATGGGGATAGATAGAATATATAACATACttgattcactctggacatgtttattgagtctaccatgtgccaagacttgatccagataatggaaatagagcatcgaataagagttaagcccctctcctca
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23799871 204 - 128169293 TCATCTTAAATTTGCGCTGGAGTTGAAAATT--AAGTTTGAAATCTCATAAAAGCTATTGATTCTGCAGTGGTGTCCATCAGGGGGATAAATAGAATACATAACATGCttgattcactctggaaa--tttgtagagtctactgtgtgccaagacttgatccagataatggaaatagagcatccaataagagttaagcccctctcctca
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52125903 179 -  59632846 TCCTCTGGAATATGTGCTGGAGTTGAAAACTTAAAATTTGAAACCTCATGAAAGATATTCATT--------GTATTCATTGTGCAAGCAAACA-------------CCTTGACT--CCCAGCACCTATT------GTGCACCACACCCTGTTCCCTGTTCCAGGTCATGAAAATAGAGCCCCAAACAAGAGTTAAAATCCTGTCCTCA
i canFam3.chr16            I 198 I 830
e mm10.chr6                 40439687  97 + 149736546 I

a score=1873551.000000
s hg38.chr7_GL383534v2_alt     74336 640 +    119183 tggaatttagattctattgggggcggggtgagggagacagacaatattaaaaatgaaccattaaatatataatgcatgatttaaggattcctgctgtgaagggacgtgacacaaggcaaggggccagtgaatgagtg-tgggtactcttcagggttatcaaggaagacctctcggacaagtgacctttgagcacacacctgcaggaagggatggggcgagtgagatgtggagaaagggcatgccagcaggagcaaaggttctggggcacaaaagattttggcatctgaaggaatagtgagaagactagagcagaatgccggatggggaagacggcaggagtcagacaggctggagatggaccatgtggcccatgggccttggtgtgggggctggctctgtc----ttctgagtgaattgggaggcactggaggatttgagtccaggaatgtcagcatctgacttactttttattttta----ttatttatttatttaataataataaca---attattatttttgagatggagtctcacgctatcg----ggctggagtgcagtgccgccacctcagctcattgcaacctctgcctcccgggttcaagtgattttcgtgcctcagcctccccagtagctgggattgcaggttccca
s panTro4.chr7             143174328 644 + 161824586 tggaatttagattctattgggggtggggtgagggagacagacaatattaaaaatgaaccattaaatatataatgcatgatttaaggattcttgctgtgaagggacatgacacaaggcaaggggccagtgaatgagtg-tgggtactcttcagggttatcagggaagacctctctgacaagtgacctttgagcacacacctgcaggaagggatggggcgagtgagatgtggagaaagggcatgccagcaggagcaaaggttctggggcacaaaagattttggcatctgaaggaatagtgagaagactagagcagaatgcctgatggggaagacggcaggagtcagacaggctggagatggaccatgtggcccatgggccttggtgtgggggctggctctgtc----ttctgagtgaattgggaggcactggaggatttgagtccaggaatgtcagcatctgacttactttttattttta----ttatttatttatttaataataataaca---attattatttttgagatggaggctcacgctatcacccaggctggagtgcagggccgccacctcagctcattgcaacctctgcctcccgggttcaagagattttcgtgcctcagcctccccagtagctgggattgcaggtaccta
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138995101 646 + 157549271 tggaatttagattctattgggagtggggtgagggagacagacaatattaaatatgaaccattaaatatataatgcatgatttaaggattcttgctgtgaagggacgtgacacagggcaaggggccagtgaatgagtg-tgggtactcttcagggttatcagggaagacctctctgacaactgacctttgagcacacacctgcaggaagagatggggtgagtgaggtgtggagaaagggcatgccagcaggagcaaaggttctggggcaaaaaagattttgacatctgaaggaatagtgagaagactagagcagaatgcctgatggggaaggtggcaggagtcagacaggctggagatggaccatgtggcccatgggccttggtgtgggggctggctctgtc----ttctgagtgaattaggaggcactggaggatttgagtccaggaatgtcagcatctggcttacttttt-ttttta----ttatttatttatttaataataataataattattattatttttgagatggagtctcatgctatcacccaggctggagtgcagtgccgccacctcagctcactgcaacctctgcctcccgggttcaagtgattttcgtgcctcagccaccccagtagctgggattgcaggtaccca
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93117703 646 + 110113093 tggaatttagattctattgggggtggagtgagggagacagacaatattaaaaatgaaccattaaatatataatgcatgatttaaggattcttgctgtgaagggacgtgacacaggacaaggggccagtgaatgagtg-tgggcattcttcagggttatcagggaagacctctctgacaagtgacctttgagcacacacctgcaggaagggatggggcgagtgagatttggagaaagggcatgccagcaggagcaaaggttctggggcaaaaaggattttggcatctgaaggaatagtgagaagactagagcagaatgcctgatggggaagatggcaggagtcagacaggctggagatggaccatgtggcccatgggccttggtgtgggggctggctctgtc----ttctgagtgaattgggaggcactggaggattggag-ccaggaatgtcagcatctggcttaccttttattttta----ttatttagttatttcataataataattattattattatttttgagacggagtctcaggatatcacccaggctggagtgcagtgccgccacttcagctcactgcaacctctgcctcccaggttcaagcaattttcgtgcctcagcctccccagtagctgggattgcaggtattca
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181010557 644 + 198365852 tggaatttagattctgttgggggtggggtgggggagacagacaaaattaaaaatgaatcattaaatatataatgtatgatgtaaggattcttgctgtgaagggacatgacaca--gcaaggggccagtgaatgagtg-tgggtactctttagggttctcatggaagacctctctgacaagtgacctttgagcacacacctgcaggaagggacagggcgagtgagatgtggagaaagggcatgccaggaggagcaaaggttctggggcaaaaaagattttggcatctgaaggaatagtgaggagactagagcgg-atgcctgatggggaagatggcaggagtcagacaggctggagatggaccatgtggcctatgggccttggtgtgagggctggctctgtc----ttctgagtgaattgggaggcactggaggatttgactccaggaatgtcagcatctggcttactttctattttta----ttatttatttatttaataataataattattattattatttttgagatggagtctcatgctgtcatgcaggctggagtgcagtgccgccacctcagctcattgcaacctctgcctcccgggttcaagggattttcatgcctcagcctcccaagtagctgggattgcaggTACCCA
i rheMac3.chr3             C 0 M 700
s macFas5.chr3             174757959 644 + 192294377 tggaatttagattctgttgggggtggggtgggggagacagacaaaattaaaaatgaatcattaaatatataatgtatgatgtaaggattcttgctgtgaagggacatgacaca--gcaaggggccagtgaatgagta-tgggtactctttagggttctcatggaagacctctctgacaagtgacctttgagcacacacctgcaggaagggacagggcgagtgagatgtggagaaagggcatgccaggaggagcaaaggttctggggcaaaaaagattttggcatctgaaggaatagtgaggagactagagcgg-atgcctgatggggaagatggcaggagtcagacaggctggagatggaccatgtggcctatgggccttggtgtgagggctggctctgtc----ttctgagtgaattgggaggcactggaggatttgactccaggaatgtcagcatctggcttactttctaTTttta----ttatttatttatttaataataataataattatTATTAtttttgagatggagtctcatgctgtcatgcaggctggagtgcagtgccgccacctcagctcattgcaacctctgcctcccgggttcaagggattttcatgcctcagcctcccaagtagctgggattgcaggtaccca
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163427680 649 + 180432695 AGGAATTTAGAttctgttgggggtggggtgggggagacagacaaaattaaaaatgaatcattaaatatatactgtatgatgTAAGGATTCTTGCTGTGAAGGGACGTGACACA--GTAAGGGGCCAGTGAATGAGTA-TGGGTACTCTTTAGGGTTATCATGGAAGACCTCTCTGACAAGTGACCTTTGAGCACACACCTGCAGGAAGGGACAGGGCGAGTGAGATGTGGAGAAAGGGCATGCCAGGAGGAGCAAAGGTTCTGGGGCAAAAAAGATTTTGGCATCTGAAGGAATGGTGAGGAGACTAGAGCGGAATGCCTGATGGGGAAGATGGCAGGAGTCAGACAGGCTGGAGATGGACCATGTGGCCCATGGGCCTTGGTGTGAGGGCTGGCTCTGTC----TTCTGAGTGAATTGGGAGGCACTGGAGGATTTGACTCCAGGAATGTCAGCATCTGgcttactttctatttttattatttatttatttatttaataagaataataataattattatttttgagatggagtctcatgctgtcacgcaggctggagtgcagtgccgccacctcagctcattgcaacctctgcctcccgggttcaagggattttcatgcctcagcctcccaagtagctgggattgcaggtaccca
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110456558 648 + 127223203 tggaatttagattctgttgggggtggggtgggggagacagacaaaatttaaaatgaatcattaaatatataatgtatgatgtaaggattcttgctgtgaagggacatgacaca--gcaaggggccagtgaatgagta-tgggtactctttagggttatcatggaagacctctctgacaagtgacctttaagcacacacctgcaggaagggacagggcgagtgagatgtggagaaacgacatgccaggaggagcaaaggttctggggcaaaaacgattttggcatctgaaggaatagtgaggagactagagcagaatgcctgatggggaagatggcaggagtcagacaggctggagatggaccatatggcccatgggccttggtgtgagggctggctctgtcagaaatctgagtgaattgggaggcactggaggatttgactccaggaatgtcagcatctggcttactttctattttta----ttatttattta-ataataataattattattattATTAtttttgagacggagtctcatgctgtcacgcaggctagagtgcagtgccgccacctcagctcattgcaacctctgcctcccgggttcaagggattttcatgcctcagcctcccaagtagctgggattgcaggtaccca
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23800075 600 - 128169293 tggaatttagattctgttgcgggtggggtgggggagacagacaatattaaaaatgaaccattaaacatataatgtatgatttaagtattcttgctgtgaaggaatgtatcacagggcaaggggccagtgaatgaatgatgggtgctctttagggttatcagggaagacctctctgataaatgaccttggagcacacacctgcaggaagggatggggtgagtgaggtgtggagaaagggtgtgcctgcaggagcaaaggttctagggcaa----------------------aacagtgaggagactagagcagaatgcctgatgaggaagatggcaggagtcagacaggctggagatggaccatgt--------ggccttggtgtgggagctggctctgtc----ttctgagtgaattggaaggcactggaggatttgagtccaggaatgtcagcatctggcttatttgaa----tta----ttatttgttttattatt-----------ttatta--atttttgagacagaatctcattcagttgcccaggctgga-tgcagtgccaccacctcagctcactgcaacctccgcctcccaggttcaagcgattctcatgcctcagccttcccagtagctgggattacaggcaccca
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40439687  97 + 149736546 I
e canFam3.chr16             52126082 830 -  59632846 I

a score=145652.000000
s hg38.chr7_GL383534v2_alt     74976 66 +    119183 ccaccatgcccagctaatttttgtatttttagtagagacagggtttcaccatattggccaggctgg
s panTro4.chr7             143174972 66 + 161824586 ccaccatgcccagctaatttttgtatttttagtagagacagggtttcaccatattggccaggctgg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138995747 66 + 157549271 ccaccatgcccggctaatttttgtatttttagtagagacagcgtttcaccatgttggccaggctgg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93118349 66 + 110113093 ccaccatgcccggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctgg
i nomLeu3.chr13            C 0 T 3740
s macFas5.chr3             174758603 66 + 192294377 acaccacacctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctgc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163428329 66 + 180432695 acaccacacctggctaatttttgcatttttagtagagacagggtttcgccatgttggccaggctgc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110457206 66 + 127223203 acactacacctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctgc
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23800675 65 - 128169293 ccaccatgcttggctaatttttgta-ttttagtagaaatgggcttttaccatgttggccaagctgg
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40439687 97 + 149736546 I
e canFam3.chr16             52126082 830 -  59632846 I
e rheMac3.chr3             181011201 700 + 198365852 M

a score=41265.000000
s hg38.chr7_GL383534v2_alt     75042 22 +    119183 tctcaaactcctgacctcaagt
s panTro4.chr7             143175038 22 + 161824586 tctcaaactcctgacctcaagt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138995813 22 + 157549271 tctcaaactcctgacctcaagt
i ponAbe2.chr7             C 0 C 0
s macFas5.chr3             174758669 22 + 192294377 tctcagactcctgacctcaagt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163428395 22 + 180432695 tctcagactcctgacctcaagt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110457272 22 + 127223203 tctcagactcctgacctcaagt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23800740 22 - 128169293 tctccaactcctgacctcaagt
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40439687 97 + 149736546 I
e canFam3.chr16             52126082 830 -  59632846 I
e rheMac3.chr3             181011201 700 + 198365852 M
e nomLeu3.chr13             93118415 3740 + 110113093 T

a score=177934.000000
s hg38.chr7_GL383534v2_alt     75064 72 +    119183 gatctgcctgcctcagcctcacgaagtgctgggattacaggtatgagccaccgcacctggccttggcttact
s panTro4.chr7             143175060 72 + 161824586 gatctgcctgcctcagcctcacgaagtgctgggattacaggtatgagccaccgcacctggccttggcttact
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138995835 72 + 157549271 gatctgcctgcctcagcctccggaagtgctgggattacaggtatgagccgccgcacctggccttggcttact
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181011901 72 + 198365852 gatctgcctgcctcagcctcccaaagtgctgggattacaggtatgagccaccacacctggccTtggcttact
i rheMac3.chr3             M 700 C 0
s macFas5.chr3             174758691 72 + 192294377 gatctgcctgcctcagcctcccaaagtgctgggattacaggtatgagccaccacacctggccttggcttact
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163428417 72 + 180432695 gatctgcctgcctcagcctcccaaagtgctgggattacaggtatgagccaccacacctggccttggcttact
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110457294 72 + 127223203 gatctgcctgcctcagcctcccaaagtgctgggattacaggtatgagccactgcacctggccttggcttact
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23800762 72 - 128169293 gatctgcccacctcagcctcccaaaatgctgggattacaggcatgagccaccacacccagctttggcttact
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40439687 97 + 149736546 I
e canFam3.chr16             52126082 830 -  59632846 I
e nomLeu3.chr13             93118415 3740 + 110113093 T

a score=311198.000000
s hg38.chr7_GL383534v2_alt     75136 123 +    119183 ttttaaaaggatcccactggttactaggtgtggaatagaaagcaacaaggcaa---ggggaag--agcaggagatgcccatgaagaggaggctgttgccttc-----agaggcaggataggactgaaaggatc
s panTro4.chr7             143175132 123 + 161824586 ttttaaaaggatcccactggttactaggtgtggaatagaaagcaacaaggcaa---ggggaag--agcaggagatgcccatgaagaggaggctgttgccttc-----agaggcaggataggactgaaaggatc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138995907 123 + 157549271 ttttaaaaggatcccactggttactaggtgtggaatagaaagcaacaaggcaa---ggggaag--agcaaaagatgcccatgaagaggaggctgtttccttc-----agaggcaggataggactgaaaggatc
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181011973 128 + 198365852 ttttaaaaggatcccactggttactaggtgtagaatagaaatcaatgaggcaa---gggcaag--agcaggggatgcccgtgaagaggaggctgttgccttcagggaagaggcaggataggactgaaaggatc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174758763 127 + 192294377 ttttaaaaggatcccactggttactaggtgtagaatagaaatcaatgaggcaa---gggcaag--ag-aggggatgcccgtgaagaggaggctgttgccttcagggaagagGCAGGATAGGACTGAAAGGATC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163428489 128 + 180432695 ttttaaaaggatCCCACTGGTTACTAGGTGTAGAATAGAAATCAATGAGGCAA---GGGCAAG--AGCAGGGGATGCCCGTGAAGAGGAGGCTGTTGCCTTCAGGGAAGAGGCAGGATAGGACTGAAAGGATC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110457366 128 + 127223203 ttttaaaaggatcccactggttactagatgtagaatagaaatcaatgaggcaa---gggcaag--agcaggggatgcccgtgaagaggaggctgttgccttcagggaagaggcaggataggactgaaaggatc
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23800834 128 - 128169293 ttttaaaaggatcccactggttactaggtgtagaatggaaagcaatgaggcaa---gggtgag--agtaggggatgtccttgaggaggaggctattgcctccagggaagaggcaggataggactgaaaggatt
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52126912 109 -  59632846 TTTCAGAAGGACCCCA-TGCCTACTGTGTGCAGAACAGACTGCCCGGAGGCCAGCTGGGCAGGGAAGCAGGAGATG-CCGTTAGGAGGAGGTC--------------AGGG--------gaactgaaagggtt
i canFam3.chr16            I 830 C 0
e mm10.chr6                 40439687  97 + 149736546 I
e nomLeu3.chr13             93118415 3740 + 110113093 T

a score=296405.000000
s hg38.chr7_GL383534v2_alt     75259 112 +    119183 tcttatggatttgatgtggggttgcagagaaagagaggagtactcact---------------tgtttccatttcctgacata-gtaaacatcacaggaggagt-gatgtgatggggaagttttgga-------------ca
s panTro4.chr7             143175255 112 + 161824586 tcttatggatttgatgtggggttgcagagaaagagaggagtactcact---------------tgtttccatttcctgacata-gtaaacatcacaggaggagt-gatgtgatggggaagttttgga-------------ca
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138996030 113 + 157549271 tcttatggatttgatgtggggttgcagagaaagaaaggagtactcact---------------tgtttccatttcctgacata-gtaaacatcacaggaggagtggatgtgatggggatgttttgga-------------ca
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181012101 113 + 198365852 gcttacggatttgatgtggggttgcagagaaagagaggagtactcact---------------tgtttccatttcctgacata-gtaaacgtcacaggaggagtggatgtgatggggaagttttgga-------------ca
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174758890 111 + 192294377 GCTTACGGATTTGATGTGGGGTTGCAGAGAA--AGAGGAGTACTCACT---------------Tgtttccatttcctgacata-gtaaacatcacaggaggagtggatgtgatggggaagttttgga-------------ca
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163428617 113 + 180432695 GCTTACGGATTTGATGTGGGGttgcagagaaagagaggagtaCTCACT---------------TGTTTCCATTTCCTGACATA-GTAAACATCACAGGAGGAGTGGATGTGATGGGGAAGTTTTGGA-------------CA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110457494 113 + 127223203 gcttatggatttgatgtggggttgcagagaaagagaggagtactcact---------------tgtttccatttcctgacata-gtaaacatcacaggaggagtggatgtgatggggaagttttgga-------------ca
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23800962 109 - 128169293 tcttatggatttgatgtggggttgcagag---gagaggaatacttact---------------tgtttccatttcccgacata-gtaaatatcacaggatgagtggatgtgat-acgaagttttgga-------------ca
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40439784 110 + 149736546 TCTTTAGGGATGGATATTCGATTTCAGAGAAAGTGAGTCGTTCCCATT---------------CATGTC--TTTACTGAGATGTGACAACAACGCAGGAGGAG--GATGTGAGGGGGAGACTTGCGA-------------CA
i mm10.chr6                I 97 C 0
s canFam3.chr16             52127021 142 -  59632846 tctcctagactggatgcagggtcacagagagagcagtcagtgatgacttacagatgtttggcatgtttctgtttatagagaaatgaggaaactgcgggaggagcaggtttggtaggagaggttgggagcttgggttcagcca
i canFam3.chr16            C 0 C 0
e nomLeu3.chr13             93118415 3740 + 110113093 T

a score=1170277.000000
s hg38.chr7_GL383534v2_alt     75371 377 +    119183 tgttaagactgaag-cct-----tgttagaca---------tccagaggcaa-------tttgataaggcagttgcaaatctgaagtgtaagttaaagttctgtg----acttggatgtaaattcagaggctaccagcttactg--ttggtgtttcaagctgtgggctgactgatattccaagacagagagtgcatacagagaagaggaaaatttgggggaactgagcccagagg---c-------ctccagagtttagag-gtcaggaaatgaagatgagggagcaaaaagattCAAGCACTTTATTCGCCAGTTTAAAAAAATATGTGCATTT--------------------------------------------------------------------------------------------------------CTGTGTTT-GCTTGATTA-------------------------------CA----------TTTAAAAAGT---------TTATTTTAA------------------ACATTTTAATAAGTATGTGTTTATGGCAAAAAGTTAAATGATC
s panTro4.chr7             143175367 371 + 161824586 tgttaagactgaag-cct-----tgttagaca---------tccagaggcaa-------tttgataaggcagttgcaaatctgaagtgtaagttaaagttctgtg----acttggatgtaaattcagaggctaccagcttactg--ttggtgtttcaagctgtgggctgagtgatattccaagacagagagtgcatacagagaagaggaaaatttgggggaactgagcccagagg---c-------ctccagagtttagag-gtcaggaaatgaagatgagggagcaaaACGATTCAAGCACTTTATTCGCCAGTTTAAAAAAA-ATGTGCATTT--------------------------------------------------------------------------------------------------------CTGTGTTT-GCTTGATTA-------------------------------CA----------TTTAAAAAAT---------TTA-----A------------------ACATTTTAATAAGTATGTGTTTATGGCAAAAAGTTAAATGATC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138996143 378 + 157549271 tgttaagactgaag-cct-----tattagaca---------tccagaggcaa-------tttgataaggcagttgcaaatctgaagagtaagttaaagttctgtg----acttggatataaattcagaggctaccagcttataaattcagtgtttcaagctgtgggctgagtgatattccaagacagagagtgcatacagagaagaggaaaatttgggggaactgagcccagagg---c-------ctccagagtttagag-gtcaggaaatgaaaatgagggagcaaaaagattCAAGCACTTTATTCGCCAGTTTAAAAAAATATGTGCATTT--------------------------------------------------------------------------------------------------------CTGTGTTT-GCTTGATTA-------------------------------CA----------TTTAAAAAGT---------TTATTTTAA------------------ACATTTTAATGAGTATGTA-TTATGGCAAAAAGTTAAATGACC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93114675 376 + 110113093 tgttaagactgaag-cct-----tgttagacg---------tccagaggcaa-------tttgataaggcagttgcaaatctgaagtgtaagttaaagttctgtg----acttggatacaaattcagaggttaccagcttacgg--ttggtgtttcaagctgtgggctgagtgatatcccaagacagagagtgcatacagagaagaggaaaatttgggggaactgagctcagagg---c-------ctccagagtttagag-gtcaggaaatgaagatgagggagcaaaaagattCAAGCACTTTATTCACCAGTTTAAAAAAA-ATGTGCATTT--------------------------------------------------------------------------------------------------------CTGTGTTT-GCTTGATTA-------------------------------CA----------TTTAAAAAGT---------TTATTTTAA------------------ACATTTTAATGAGTATGTATTTATGGCAAAAAGTTAAATGATC
i nomLeu3.chr13            T 3740 C 0
s rheMac3.chr3             181012214 374 + 198365852 tgttaagactgaag-cct-----tgttagaca---------tccagaggcaa-------tttgatatggcagttgcaaatctgaagtgtaagttaaagttctgtg----acttggacataaattcagaggctaccagcttacag--ttggtgtttcaagctgtgggctaagtgatattccaagaaacagagtgtatacagagaagaggaaaatttgggggaac--agcccagagg---c-------ctccagagtttagag-gtcaggaaatgaagatgaaggagcaaaaagattCAAGCACCTTATGGGCCAGTTTAAAAAAT-ATGTGCATTT--------------------------------------------------------------------------------------------------------CTGTGTTT-GCTTGATTA-------------------------------CA----------TTTTAAAAGT---------TGATTTTAA------------------ACATTTTAATGAGTATGTATTTATAGCAAAAAGTTAAATGATC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174759001 374 + 192294377 tgttaagactgaag-cct-----tgttagaca---------tccagaggcaa-------tttgatatggcagttgcaaatctgaagtgtaagttaaagttctgtg----acttggacataaattcagaggctaccagcttacag--ttggtgtttcaagctgtgggctaagtgatattccaagaaacagagtgtatacagagaagaggaaaatttgggggaac--agcccagagg---c-------ctccagagtttagag-gtcaggaaatgaagatgaaggagcaaaaagattCAAGCACCTTATGGGCCAGTTTAAAAAAT-ATGTGCATTT--------------------------------------------------------------------------------------------------------CTGTGTTT-GCTTGATTA-------------------------------CA----------TTTAAAAAGT---------TGATTTTAA------------------ACATTTTAATGAGTATGTATTTATAGCAAAAAGTTAAATGATC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163428730 374 + 180432695 TGTTAAGACTGAAG-CCT-----TGTTAGACA---------TCCAGAGGCAA-------TTTGATATGGCAGTTGCAAATCTGAAGTGTAAGTTAAAGTTCTGTG----ACTTGGACATAAATTCAGAGGCTACCAGCTTACAG--TTGGTGTTTCAAGCTGTGGGCTAAGTGATATTCCAAGAAACAGAGTGTatacagagaagaggaaaatttgGGGGAAC--AGCCCAGAGG---C-------CTCCAGAGTTTAGAG-GTCAGGAAATGAAGATGAAGGAGCAAAAAGATTCAAGCACCTTATGGgccagtttaaaaaat-atgtgcattt--------------------------------------------------------------------------------------------------------ctgtgttt-gcttgatta-------------------------------ca----------tttaaaaagt---------tgattttaa------------------acattttaatgagtATGTATTTATAGCAAAAAGTTAAATGATC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110457607 374 + 127223203 tgttaagactgaag-cct-----tgttagaca---------tccagaggcaa-------ttttatatggcagttgcaaatctgaagtataagttaaagttctgtg----acttggacataaattcagaggctaccagcttacag--ttggtgtttcaagctgtgggctaagtgatattccaagaaagacagtgtatacagagaagaggaaaatttgggggaac--agcccagagg---c-------ctccagagtttagag-gtcaggaaatgaagatgagagagcaaaaagattCAAGCACCTTATGGGCCAGTTTAAAAAAT-ATGTGCATTT--------------------------------------------------------------------------------------------------------CTGTGTTT-ACTTGATTA-------------------------------CA----------TTTAAAAAGT---------TTATTTTAA------------------ACATTTTGATGAGTATGTATTTATGGCAAAAAGTTAAATGATC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23801071 383 - 128169293 tgtgaagactgcagtccc-----tgttagaca---------tctagaggcaa-------tttgatcaggcagttgcaaatctaaagtctaagagaaagtttggtg----acttggatatacattcagaggctaccagcttatag--ttggtgtttcaaactgtaggctgagtgatattccaagaaagagagggtatacagagaagaggaaaatttaggggaactgaacccagagg---tctctagactctagactctagag-gtcaggaaataaagatgagtgagcaaaAATATTCAAGTACTTTATGGGCCAGTTTAAAAAAT-ATGTGTATTT--------------------------------------------------------------------------------------------------------CTGTGTTT-GCTTGATTA-------------------------------CA----------TTTAAAAAGT---------TTATTTTAA------------------ACATTTTAATGAGTCAGTATTTGGGGC-AAAAGTTAAGTGATG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40439894 387 + 149736546 TGT-GAGACAGGAG-CCTCTTCCTGTGAGACAGGAGCCTCTTCCGTAGGCGGAGCGAGCTGCAATAAGATCAATGACAAGCTGAAGACCGAGAAGGAGGACTGTG----GTATACTTGTAAATCCCAAGGCTGGTGGC-TGTAG--GTAGCGTCTTCAGC---------AATGGCGCTCTAGGGAAGCGA----ATTCAGATCAAAGTGCA------GGGGACTGAGCCGAGGGA---A-------CTCCATGTTTTATAGAGGCTGGGACTGGAGA---------GAAGTCATCCCAGCACTTTATGGATCAGAGTTTAAGAT-ACATGCATTC--------------------------------------------------------------------------------------------------------ATTTGTAT-ATTTGATTA-------------------------------TAGGTAGTTTATTTTAAACATTACTTGAACATTATTTTAG------------------ACACTTTAATAAGTAGATATTAATGGCAAAagattaatcagtc
i mm10.chr6                C 0 I 440
s canFam3.chr16             52127163 523 -  59632846 cgttaagatcgagatgcc-----tgttgcaca---------tccagggggagg------ctgggtcagggagctgcagacctgaagttcaggagtggagtctggacaccatgcagatgtccctccagggcgcacccggttacag----agggtttacaactgtgggctgcgtgctactgcagga-agtgaatgcccccag------ggagaagctggggagactgagcccagggagacc-------ctcgtgagcttagag-gtcagcagatgcagagcagtgagtggaggCATTCAAGCACTTTATGGACCAGT---AAAAAA-ATATACATTTATTgggatgcctgggtggctcagcagttaagcgtctgcattaggctcagggtgtgatcccagggtcctgggatcgagtcccacatcgagtcacctgcagggtgcctgtgtctctcttgaataaataaataaaatctttTTTTTTAAATGCATTTA----------TTTATAATTT---------TCATTTAAATTCTTGGAAATTATTTTGACATTTTAAT---TAGATCTCCATGGC-AAAGATGAAACAATC
i canFam3.chr16            C 0 C 0

a score=1230037.000000
s hg38.chr7_GL383534v2_alt     75748 407 +    119183 AAATTGCACGCAAGACACACTGT--GCAGCAACCACCTCCTCTAACCCCGCCATCC---CTTTCTCCATCCTTAGAAACAGCCACTTTTGACAGTTTATCTTC----AGTTTCTAGTAGTTACCTACTGCGGAAGAGCTTAAATTCTTCTTTACCACATTTCAAAAAAATCACAAAA--------------TGTTTTATGAAG-----GTAAAACTTCAGCATAGG----AATCTCTTGATTGGATCAGAAGGATGAAGAAGTAGCTGTGGATGTTTGACCAAGTTACTGATGACCTCCAGAG-CTCATCCCTTGGAGCACTGACAGCAAATAAGTCAAGACGGA-GCACAGTAG--AGATCCATCTCTGAGAATGTCTCCTCCATACCTGCTCATTTCTTCCCAGTGAGGCACtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
s panTro4.chr7             143175738 403 + 161824586 AAATTGCACGCAAGACACACTGT--GCAGCAACCACCTCCTCTAACCCCGccatcc---ctttctccatccttagaaacagccacttttgacagtttatcttc----agtttctagtagttaccTACTGCGGAAGAGCTTAAATTCTTCTTTACCACATTTCAAAAAAATCACAAAA--------------TGTTTTATGAAG-----GTGAAACTTCAGCGTAGG----AATCTCTTGATTGGATCAGAAGGATGAAGAAGTAGCTGGGGATGTTTGACCAAGTTACTGATGACCTCCAGAG-CTCATCCCTTGGAGCACTGACAGCAAATAAGTCAAGACGGA-GCACAGTAG--AGATCCATCTCTGAGAATGTCTCCTCCATACCTGCTCATTTCTTCCCGGTGAGGCACtgtgtgtgtgtgtgtgtgtgtgtgt----
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138996521 404 + 157549271 AAATTGCACGCAAGACACACTGT--GCAGCAACCACCTCCTCTAACCCCTCCATCC---CTTTCTCCATCCTTAGAAACAGCCACTTTTGACAGTTTATCTTC----AGTTTCTAGTAGTTACCTCCTGCAAAAGAGCTTAAATTCTTCTTTACCACA-TTCAAAAAAATCACAAAA--------------TGTTTTATGAAGTTTTTGTAAAACTTCAGTGTAGG----AATCTCTTGATTGGATCAGAAGGAT---GAAGTAGGTGGGGATGTTTGACCAAGTTACTGGTGACCTCCAGAG-CTCATCCCCTGGAGCACTGACAGCAGATAAGTCAAGACTGA-GCACAGTAG--AGATCCATCTCTGAGAATGTCTCTTCCATACCTGCTCATTTCTTCCCAGTGAGGTGCtgtgtgtgtgtgtgtgtgtgtgtgt----
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93115051 402 + 110113093 AAATTGCACGCAAGACACACTGT--GCAGCAACCACCTCCTCTAACCCCGCCATCC---CTTTCT-CATCCTTAGAAACAGCCACTTTTGACAGTTTATCTTC----AGTTTCTAGTAGTTACCTCCTGCGGAAGAGCTTAAATTCTTCTTTACCACATTTCAAAAAAATCACAAAA--------------TGTTTTATGAAG-----GTAGAACTTCAGTGTAGG----AATCTCTTGATTGGATCAGAAGGATGAAGAAGTAGCTGGGGATGTTTGACCAAGTTACTGGTGACCTCCAGAG-CTCATCCCTTGGAGCACTGACAGCAAATAAGTCAAGACTGA-GCACAGTAC--AGATCCATCTCTGGGAATGTCTCTTCCATACCTGCTCATTTCTTCCCAGCGAGGCGgtgtgtgtgtgtgtgtgtgtgtgtgt----
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181012588 404 + 198365852 AAA-TGCATGCAAGACACACCGT--GCagcaatcacctcttctaaccctgccatcc---ctttctccatccttagagacagccacttttcacagtttatcatc----agtttctagtagttaccTCCTGTGGAAGAGCTTACATTCTTCTTTACCATACTT--AAAAAATCATAAAA--------------TGTTTTATGAAG-----GTAAAACTTCAGTGTAGGAACCAACCTCGTGACTGGATCAGAAGGATGAAGAAGTAGCTGGGGATGTGTGACCAAGTTACTGGTGACTTCCAGAG-CTCATCCCTTGGAGCACTGACAGTGAATAAGTCAAGACTGA-GCACAGTAG--AGATCCATCTCTGAGAATGTCTCTTCCATATCTGCTCATTTCTTCCCAGCGAGGCAgtgtgtgtgtgtgtgtctgtgtgtgt----
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174759375 404 + 192294377 AAA-TGCATGCAAGACACACCGT--GCagcaatcacctcttctaaccctgccatcc---ctttctccatccttagagacagccacttttcacagtttatcatc----agtttctagtagttaccTCCTGTGGAAGAGCTTATATTCTTCTTTACCATACTT--AAAAAATCATAAAA--------------TGTTTTATGAAG-----GTAAAACTTCAGTGTAGGAACCAACCTCGTGACTGGATCAGAAGGATGAAGAAGTAGCTGGGGATGTGTGACCAAGTTACTGGTGACTTCCAGAG-CTCATCCCTTGGAGCACTGACAGTGAATAAGTCAAGACTGA-GCACAGTAG--AGATCCATCTCTGAGAATGTCTCTTCCATATCTGCTCATTTCTTCCCAGCGAGGCAgtgtgtgtgtgtgtgtctgtgtgtgt----
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163429104 397 + 180432695 AAA-TGCATGCAAGACACACTGT--GCAGCAATCACCTCTTCTAACCCTGCCATCC---CTTTCTCCATCCTTAGAGACAGCCACTTTTCACAGTTTATCATC----AGTTTCTAGTAGTTACCTCCTGTGGAAGAGCTTAAATTCTTCTTTACCATACttc-aaaaaatcataaaa--------------tgttttatgaag-----GTAAAACTTCAGTGTAGG----AACCTCGTGACTGGATCAGAAGGATGAAGAAGTAGCTGGGGATGTGTGACCAAGTTACTGGTGACTTCCAGAG-CTCATCCCTTGGAGCACTGACAGTGAATAAGTCAAGACTGA-GCACAGTAG--AGATCCATCTCTGAGAATGTCTCTTCCATACCTGCTCATTTCTTCCCAGCGaggcggtgtgtgtgtgtgtgtc----tgtgt----
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110457981 399 + 127223203 AAA-TGCATGCAAGACACACTGT--GCAGCAATCACCTCCTCTAACCCCGccatcc---ctttctccatccttagagacagccacttttcacagtttatcatc----agtttctagtagttaccGCCTGTGGAAGAGCTTAGATTCTTCTTTACCACACTTC-AAAAAATCATAAAA--------------TGTTTTATGAAG-----GTAAAACTTCAGTGTAGG----AACCTCATGACTGGATCAGAAGGATGAAGAAGTAGCTGGGGATGTTTGACCAAGTTACTGGTGACTTCCAGAG-CTCATCCCTTGGAGCATTGACAGTGAATAAGTCAAGACTGA-CCACAGTAG--AGATCCATCTCTGGGAATGTCTCTTCCATACCTGCTCATTTCTTCCCAGTGAGGCG--gtgtgtgtgtgtgtctgtgtgtgt----
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23801454 387 - 128169293 AAATTGCACACAGGACACACTGT--GCCGCAGTCGCCTCCTCTAACCCCGCCATCC---CTTTCTCCATCCTTAGAGACAGCCACTTTTGACAGTTTAGCTTC----AGTTTCTAGCAGTTACCTCCTGTGGAAGAGCTTAAATTCTTCTTTACCACATTTC-AAAAAATCATAAAACAT----TTTATTTTGTTTTATGAAG-----GTAAAACTTCAATGTGGG----AACCTTTTGATTGGATCAGAAGGATGAAGAAGTAGCTGGAGATGTTTGACCAAGTTACCAGGGACTTCCAGAG-CTCATCCCGTGGAGCACAGACAG----TAAGTCAAGACTGA-GCATGGCAGACAGATCCAGCCCTGAGAATGTCTTTTTCATACCTG-TCATTTCTTCCCAGTGAGGCG----------------------GTAT----
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52127686 391 -  59632846 acattacacacaggacatacagtgagcagcaatctcctccccagaccctccc--ccaggccctctccctccctggggacagtcacttttgacagtttctctctttggagcttctggtggttaccc------------ttTACTTTCTTCCTTATCACACTTCCCCAAAATCATTAAGCGTTTGCTTCTTTTTGTTTGAGGAAG-----ATAAACCTTCAGTGTGGG----GATCTTGTAATTGGGTCAGAAGCATAAAGCAATGGCTGGCAACGTTTGACCAAGTAACTAGTGACTTCTTGAGCCCCGGCCCTGGGAGCAGAGAGAC------AGTCAAGATCAAGGCACACC----AGATCCAGC----------TCTTTGCCATTCCTATGAATTCCTTCCTGTGAGAGTAATGTGTGTGTGTGTGCGTGAG---------
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40440281 440 + 149736546 I

a score=84682.000000
s hg38.chr7_GL383534v2_alt     76155 85 +    119183 gtgtgtgtgtgtATGTATGTATGTGATGTGGgagaggcagaaacag------------acatacacacatacatacac------------acacagagacagacagaga
s panTro4.chr7             143176141 73 + 161824586 ------------atgtatgtgtgtgatgtgGGAGAGGCAGaaacag------------acatacacacatacatacac------------acacagagacagacagaga
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138996925 63 + 157549271 --------------------gtgAGATGTGGGAGAGGCAGAAATAG------------acatacacacatacatacac------------acac--acacaGAGAGAGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93115453 63 + 110113093 ----------gtgtgtgtgtgtgtgatgtgGGAGAGGcagaaacag------------acatacacacatacatacac------------------------agggaca
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181012992 77 + 198365852 --------------------gagtgATGTGGGAGAGGCAGAAacagacatacacacatacacacacacacacacacac------------acacacacacaGAGAGAGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174759779 63 + 192294377 --------------------gagtgatgtgGgagaggcagaaac--------------atatacacacacacacacac------------acacacacacagagagaga
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163429501 71 + 180432695 --------------------gagtgatgtgGGAGAGGCAgaaacagacatac------acacacacacacacacacac------------acacacacacacacagaga
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110458380 69 + 127223203 --------------------gagtgatgtgGgagaggcagaaacagacac--------acacacacacacacacacac------------acacacacacagagacaga
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23801841 83 - 128169293 --------------------GTGTGATGTAGGAAAGGCAAacacacacacac------acacacacacacacacacaccccgtaccacacacacatgcacacacacaca
i calJac3.chr8             C 0 I 306
s mm10.chr6                 40440721 51 + 149736546 --------------GTGTTTATGTGTCTGGGTATATGCAAAGAT--------------GTGTACATTCATAGATAGAG------------T------------------
i mm10.chr6                I 440 C 0
s canFam3.chr16             52128077 15 -  59632846 ----------------------------AGAGAGGAACAGGGA------------------------------------------------------------------
i canFam3.chr16            C 0 C 0

a score=1082170.000000
s hg38.chr7_GL383534v2_alt     76240 311 +    119183 gagagagagaTCTTATTTCTGTGGCCGGGGGCGGTGG--------GGCTGGCCTTGGTGCAGGTCACACAGGTGACCCATTACCTGTTCTAATCTTAGGGACTCCGGGAATGACCA--------------------------------------------CAGCCCAACTGTGACTAACAGAGAAAAGGTCA---GACTAGTGGGTCTGTACCATCGTTTTAAAATGTCTGCTCC-TTAAAGTATCGGTAGGATATCATCAATCTCTAAATTACTG-----------GGACATCAAATCAGAGATCTATTCCTATTCTAAGTAT-GCTATGTGTTGTGTGTGTAG------ACAAGTGGTATGTTTCTACTGTCACAGCTATTTT
s panTro4.chr7             143176214 311 + 161824586 gagagagagaTCTTATTTCTGTGGCCGGGGGCGGTGg--------ggctggccttggtgcaggtcacacaggtgacccattacctgttctaatcttagggactccaggaaTGACCA--------------------------------------------CAGCCCAACTGTGACTAACAGAGAAAAGGTCA---GACTAGTGGGTCTGTACAATCGTTTTGAAATGTCTGCTCC-TTAAAGTATTGGTAGGATATCATCAATCTCTAAATTACTG-----------GGACATCAAATCAGAGATCTATTCCTATACTAAGTAT-GCTATGTGTTGTGTGTGTAG------ACAAGTGGTATGTTTCTACTGTCACAGCTATTTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138996988 311 + 157549271 AAGAGAGATATCTTATTTCTGTGGCCGGGGGTGGTGG--------GGCTGGCCTTGGTGCAGGTCACACAGGTGACCCATTACCTGTTCTAATCTTAGGGAATCTGGGAATGACCA--------------------------------------------CAGCCTAACTGTGACTAACAGAGAAAAGGTCA---GACTAGTGGGTCTGTACCATCGTTTTAAAATGTCTGCTCC-TGAAAGTATCAGTAGGATATCATCAATCTCTAAATTACTG-----------GGACATCAAATCAGAGATCTATTCCTATTCTAAGTAC-GCTATGTCTTGTGTGAGTGG------ACAAGTGGTGTGTTTCTACTTTCACAGCTATTTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93115516 311 + 110113093 gagagagagaTCTTATTTCTGTGGCCGGGGGCAGTGG--------GGCTGGCCTTGGTGCAGGTCACAAAGGTGACCCATTACCTGTTCTAATCTTAGGGAATGTGGGAATGACCA--------------------------------------------CAGCCCAACTGTGACTAACAGAAAAAAGGTCA---GACTAGTGGGTCTGTACCATCGTTTTAAAATGTCTGCTCC-TCAAAGTATCGGTAGGATATCATCAATCTCTAAATTACTG-----------GGACATCAAATCAGAGATCTATTCCTATTCTAAGTAT-GCTATGTCTTGTGTGAGCAG------ACAAGTGGTGTGTTTCTACTGTCACAGCTATTTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181013069 311 + 198365852 GAGAGAGAGATCTTATTTCTGTGGCTGGGGGCTGTGG--------GGCTGGTCTTGGTGCAGGTCACACAGGTGACCTATTACCTGTTCTAATGTTAGGGAATCTGGGAATGACCA--------------------------------------------CAGCCCAACTGTGACTAACAGAGAGAAGGTCA---GACTAGTGGGTCTATACCATCGTTTTAAAATGTATGCTCC-TTAAACTATTGGTAGGATATCATCAATCTCTAAATTACTG-----------GGACATCAAATCAGAGACCTATTCCTAGTCTAAGAAT-GCTATGTCTTGTGTGAGTAG------ACAAGTGGTGTGTTTCTACTGTCACAGCTATTTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174759842 311 + 192294377 gagagagagaTCTTATTTCTGTGGCTGGGGGCTGTGG--------GGCTGGTCTTGGTGCAGGTCACACAGGTGACCTATTACCTGTTCTAATGTTAGGGAATCTGGGAATGACCA--------------------------------------------CAGCCCAACTGTGACTAACAGAGAGAAGGTCA---GACTAGTGGGTCTATACCATCGTTTTAAAATGTATGCTCC-TTAAACTATTGGTAGGATATCATCAATCTCTAAATTACTG-----------GGACATCAAATCAGAGACCTATTCCTAGTCTAAGAAT-GCTATGTCTTGTGTGAGTAG------ACAAGTGGTGTGTTTCTACTGTCACAGCTATTTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163429572 311 + 180432695 gagagagagatcttatTTCTGTGGCTGGGGGCTGTGG--------GGCTGGTCTTGGTGCAGGTCACACAGGTGACCTATTACCTGTTCTAATGTTAGGGAATCTGGGAATAACCA--------------------------------------------CAGCCCAACTGTGACTAACAGAGAGAAGGTCA---GACTAGTGGGTCTATACCATCGTTTTAAAATGTATGCTCC-TTAAACTATTGGTAGGATATCATCAATCTCTAAATTACTG-----------GGACATCAAATCAGAGACCTATTCCTAGTCTAAGAAT-GCTATGTCTTGTGTGAGTAG------ACAAGTGGTGTGTTTCTACTGTCACAGCTATTTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110458449 311 + 127223203 gagagagagaTCTTATTTCTGTGGCTGGGGGCTGTGG--------GGCTGGTCTTGGTGCAGGTCACGCAGGTAACCTATTACCTGTTCTAATGTTAGGGAATCTGGGAATGACCA--------------------------------------------CAGCCCAACTGTGACTAACAGAGAGAAGGTCA---GACTAGTGGGTCTATACCATCGTTTTAAAATGTCTGCTCC-TTAAACTATTGGTAGGATATCATCAATCTCTAAATTACTG-----------GGACATCAAATCAGAGACCTATTCCTAGTCTAAGAAT-GCTATGTCTTGTGTGAGGAG------ACAAGTGGTGTGTTTCTACTGTCACAGCTATTTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23802230 309 - 128169293 GAGAAAGATATCTTATTCCTGTG--CTGTGGCTGGGG--------GGCTGGCCTTGGTGTGGGTCAGGCAGGTGACCCATTACCTGTTCTAATTTTAGGGAATCTGCGAATGATCA--------------------------------------------CAGCCCAACTGTTACTAACAGAGGAAAGGTCA---GACTAGTGGGTCCATACCATAGTTTTAAAGTATCTGCTCC-TTAAATTATCGCTGGGATATCACCAATCTCTATATTGCTG-----------GGACATCAGATCAGAAATCTGTTCCTATTCTAAGAAT-GCTATGTTTTGTATGAGTAG------ACAAGGGGTGTATTTCTATTGTCACAGCTATTTT
i calJac3.chr8             I 306 C 0
s mm10.chr6                 40440772 309 + 149736546 GAGGGAGG--------------AGCCCGGAGCTCTCGCCTCCAACTGCTAGCTGAGGTGTCAGTGACCTGGGCGAGCCATTACCTGCTGTAATTTTAGGGAAACTGAAAATGCTCA--------------------------------------------CAGCT-------------AAGGGAAATGACCA---GGGGAGTGACTCCAAGGAATGATTTTAAAATATCTGCTCTGTGGAGAAATGGGCAGCAGATGATGGATGCCTAAATCATTGTCAAAATAATTGTGCGCCAGTTTGGAAGTGTGTTCCTGCTCCAGGAAT-GCTGTCTCTACTGTCCGTGGCTTGGAAAACATCAT-TCTTTCTACCTCAACAGTTATTTT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52128092 342 -  59632846 GACACAGAGATCTCATCTCTGTG----------------------GAATGGCATTGGACCAGGTCACACGGGCGACCCAT---CTGCTCTAATTCTGGAGAATCTGGGAATGGCCAAGCGCCACATAAATTCTGTTACCCACATAAATAAATTCTGTTACCCACATAAATGTGGGTAACAGAAAACAGATCAGTGGACTAAGGAGTCTAGACCATTGTTTCAAAATAACTGCTCC-TTAAAATATGGGCAGTACATCAATGGTCTCTGAATTAGTG-----------GGATGTCAGGTTAGCAATCTGTTCTTATTCTAAGAAGAACAGTGTGTTTTGTGAGGGG------ACAGGCAGTGTGTCTCTATTATAACAGCTATTtt
i canFam3.chr16            C 0 I 195

a score=233824.000000
s hg38.chr7_GL383534v2_alt     76551 68 +    119183 GATGAATAATCTCTAGTTCTAGCAAATGGGAAACTTTGGCAAGAGAAGCAATTTGTT-AAAATCTGTTT
s panTro4.chr7             143176525 68 + 161824586 GATGAATAATCTCTAGTTCTAGCAAATGGGAAACTTTGGCAAGAGAAGCAATTTGTT-AAAATCTGTTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138997299 68 + 157549271 GATGAATAATCTCTAGTTCTAGCAAATGGGAAACTTTGGCAAGAGAAGCAATTTGTT-AAAATCTGTTT
i ponAbe2.chr7             C 0 I 141
s nomLeu3.chr13             93115827 68 + 110113093 GATGAATAATCTCTAGTTCTAGCAAATGGGAAACTTTGGCAAGAGAAGCAATTTGTT-AAAATCTGTTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181013380 68 + 198365852 GATGAATAATCTCTAGTTCTAGCAAATGGGAATATTTGGCAAGAGAAGCAGTTTGTT-AAAATCTGTTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174760153 68 + 192294377 GATGAATAATCTCTAGTTCTAGCAAATGGGAATATTTGGCAAGAGAAGCAGTTTGTT-AAAATCTGTTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163429883 68 + 180432695 GATGAATAATCTCTAGTTCTAGCAAATGGGAATATTTGGCAAGAGAAGCAGTTTGTT-AAAATCTGTTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110458760 69 + 127223203 GATGAATAATCTCTAGTTCTAGCAAACGGGAATATTTGGCAAGAGAAGCAGTTTGTTAAAAATCTGTTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23802539 68 - 128169293 GATGATTAATCTCTAGTAATAGCAAATGGGAAACATTGGCAAGAGAAGCAATTTGTT-AAAATCTGTTT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40441081 49 + 149736546 AACGAACACCTTCTCATCCTAGCCAAGGGGAA-------------AAGCAATAGATC-----CCTGT--
i mm10.chr6                C 0 C 0
s canFam3.chr16             52128629 65 -  59632846 GACAGACATCCTGTAATTTTAGCAAATGTGACACCGTGGCAAGAGAAGCAATTTGTC-AGAATCTC---
i canFam3.chr16            I 195 C 0

a score=790373.000000
s hg38.chr7_GL383534v2_alt     76619 232 +    119183 GAT---TTATTCATCAGATAGATTTATAGTAGATTTCAAATTAATAGAATAACCTAGGGGTTTTTATTAATGGCactaaagtatccatgggtaaa---at---atgttgtcactgatttgcttca-caatacc-ccagca---ctca----ccctc---------------------------aatgaagttgcagttatgaacta-aacaagactgtaaagccatacataatttttgaagctaggttatggat--acataaggactcattata--gtattt
s panTro4.chr7             143176593 232 + 161824586 GAT---TTATTCATCAGATAGATTTATAGTAGATTTCAAATTAATAGAATAACCTAGGGGTTTTTATTAATGGCactaaagtatccatgggtaaa---at---atgttgtcactgatttgcttca-gaatacc-ccagca---ctca----ccctc---------------------------aatgaagttgcagttatgaacta-aacaagactgtaaagccatatataatttttgaagctaggttatggat--acataaggactcattata--gtattt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138997508 234 + 157549271 GATA--GTAGGCATCAGATAGATTTATAGTAGATTTCAAATTAATAGAATAACCTAGGGGTTTTTATTAATGGCaccaaattatccatgggtaaa---at---atgttgtcactgatttgcttcacgaatacc-ccagca---ctca----ccctc---------------------------aatgaagttgcagttatgaacta-aacaagactgtaaagccatacataattttcgaagaaaggttatggat--acataaggactcattata--atattt
i ponAbe2.chr7             I 141 C 0
s nomLeu3.chr13             93115895 232 + 110113093 GAT---TTATTCATCAGATAGATTTATAGTAGATTTCAAATTAATAGAATAACCTAGGGGTTTTTATTAACGGCaccaaagtatccatgggtaaa---at---atgttgtcactgatttgcttca-gaatacc-ccagca---ctca----ccctc---------------------------aatgaagttgcagttatgaacta-aacaagactgtaaagccatacataatttttgaagctaggttacggat--acatgaggactcattata--atattT
i nomLeu3.chr13            C 0 I 3912
s rheMac3.chr3             181013448 232 + 198365852 GAT---TTATTCATCAGATAGATTTATAGTAGATTTCAAATTAATAGCATAACCTAGAGGTTTTTATTAATGacaccaaagtgtccatgggtaaa---at---aagttgtcactgatttgcttca-gaatacc-ccaaca---ctca----ccctc---------------------------aatgaagttgcaggtatgaacga-aacaagactgtaaagccatacataatttttgaagctaggttttggac--acataaggattcatttta--atattt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174760221 232 + 192294377 GAT---TTATTCATCAGATAGATTTATAGTAGATTTCAAATTAATAGCATAACCTAGAGGTTTTTATTAATGacaccaaagtgtccatgggtaaa---at---aagttgtcactgatttgcttca-gaatacc-ccaaca---ctca----ccctc---------------------------aatgaagttgcaggtatgaacga-aacaagactgtaaagccatacataatttttgaagctaggttttggac--acataaggattcatttta--atattt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163429951 232 + 180432695 GAT---TTATTCATCAGATAGATTTATAGTAGATTTCAAATTAATAGCATAACCTAGAGGTTTTTATTAATGACACCAAAGTGTCCATGGGTAAA---AT---AAGTTGTCACTGATTTGCTTCA-GAATACC-TCAACA---CTCA----CCCTC---------------------------AATGAAGTTGCAGGTATGAACGA-AACAAGACTGTAAAGCCATACATAATTTTTGAAGCTAGGTTTTGGAC--ACATAAggattcatttta--atattt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110458829 232 + 127223203 GAT---TTATTCATCAGATAGATTTATAGTAGATTTCAAATTAATAGCATAACGTAGGAGTTTTTATTAATGacaccaaagtatccatgggtaaa---at---atgttgttactgatttgcttca-gaatacc-ccaaca---ctca----ccctc---------------------------aatgaagttgcaggtatgaacga-aacaagactgtaaagccatacgtaatttttgaagctaggttttggat--acataaggattcatttta--atattt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23802607 228 - 128169293 GAT---TTATTCATCAAATAAATTTA---TAGATTTCAAATTAATAGAATAACCTAAGGGCTTTTATTAATGGCACCAAAGTACCCATGGGTATA---AT---AGATTTTCACTGATTTGCTTCA-GAATACC-TCAGCA---CTCA----CCCTC---------------------------AATGAAGTTGCACATATGAACAA-AATGAGCCTGTAAAGCCACACATAATTTTTGAAGCTAGATTATGGATACACATAAGGACTCA---TA--ATATTT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40441130 254 + 149736546 ---CCGTTAAACACTCGTTACATTT-CAGGAGATTTCAAAATGATGGGTTAACCTAGAAATGTTCATTTTTGGCactgaagtattcaggggtgaa---atggcatgaaatcattaatttgctttt-acatacc-caagCATCCCTCC----CCCTCAAAATAACAAAAACAAAAAGAAAAAAAAAGAAACTTGAAGATAACAATGGTAACTAGATTATAAAGCTGT-TATAATGCTTGGGGCTAGGTTAT-AAT--GCAGTCAGACTAGCC-----------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52128694 241 -  59632846 -AT---GTATTCATCAGGTAGATGTTTAGTAGATCTGAAGAGAATAGATTAATCTGAAGAGTTTCACTAATGGCGctgaagtcttcatgaatgaaaggat---gtgttaccagtgatttgcttta-aaaaacctccagta---cccaaccgccccc---------------------------agcgaaattgcagatctaaatga-aacaagattgtacagctgcccataatttttgaagctacatcgctgat--acatggagactcattatactgtattt
i canFam3.chr16            C 0 C 0

a score=128723.000000
s hg38.chr7_GL383534v2_alt     76851 42 +    119183 tctctatttttggtatgtttgaacatttccatgagaaaaagt
s panTro4.chr7             143176825 42 + 161824586 tctctatttttggtatgtttgaacatttccatgagaaaaagt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138997742 42 + 157549271 tctctatttttcgtatgttggaacatttccataagaaaaagt
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181013680 42 + 198365852 tctctatttttggtatgtttgaacacttccagaagaaaaagt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174760453 42 + 192294377 tctctatttttggtatgtttgaacacttccagaagaaaaagt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163430183 42 + 180432695 tctctatttttggtaTGTTTGAACACTTccagaagaaaaagt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110459061 42 + 127223203 tctctatttttggtatgtttgaacacttccagaagaaaaagt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23802835 42 - 128169293 TCTTTATTTTTGCTATGTTTGAACATTTCCGTAAGAAAAAGT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40441384 32 + 149736546 ----------TGTCTTATTTGATCATTTCattaaaaaaaatt
i mm10.chr6                C 0 C 0
s canFam3.chr16             52128935 42 -  59632846 tctctacttttggtgtgtttgaacacttccacgagaaaaagc
i canFam3.chr16            C 0 C 0
e nomLeu3.chr13             93116127 3912 + 110113093 I

a score=22802.000000
s hg38.chr7_GL383534v2_alt     76893 6 +    119183 taaaca
s panTro4.chr7             143176867 6 + 161824586 taaaca
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138997784 6 + 157549271 taaatg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93120039 6 + 110113093 TAAACA
i nomLeu3.chr13            I 3912 C 0
s rheMac3.chr3             181013722 6 + 198365852 taaata
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174760495 6 + 192294377 taaata
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163430225 6 + 180432695 taaata
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110459103 6 + 127223203 taaata
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23802877 6 - 128169293 TAAATG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40441416 6 + 149736546 taaata
i mm10.chr6                C 0 I 254
s canFam3.chr16             52128977 6 -  59632846 aaaata
i canFam3.chr16            C 0 C 0

a score=1046908.000000
s hg38.chr7_GL383534v2_alt     76899 322 +    119183 aaaaGGAGGAAAGGGTTAATAAC-AGACTCCTAGGCTTTAAAGCAGCCTCCAGGCTTTAT-TTACTTAGCCCGTAATCCTTCCTTGGAATTCTGTTGTGCCGGCAGTGCCACCCATGAGATACAATTTTATGAGCACTTTGAAATGAGAAATGTGATGGGCAAATATCAAGTATTGTTAATGATTTATGTAATTATCATTGGATTCATCGCAGCTGACAAGTGGCTGCTTCTGTACACTCTCTC--AGCAGGCAGGGAGGAGATTAGAAGAAGGTCCCCCTTCAAGGTTGCTGGCTTTGCTGACCATCCT----TGTCA-------TAGGAACAGAG
s panTro4.chr7             143176873 322 + 161824586 aaaaGGAGGAAAGGGTTAATAAC-AGACTCCTAGGCTTCAAAGCAGCCTCCAGGCTTTAT-TTACTTAGCCCGTAATCCTTCCTTGGAATTCTGTTGTGCCGGCAGTGCCACCCATGAGATACAATTTTACGAGCACTTTGAAATGAGAAATGTGATGGGCAAATATCAAGTATTGTTAATGATTTATGTAATTATCATTGGATTCATCGCAGCTGACAAGTGGCTGCTTCTGTACACTCTCTC--AGCAGGCAGGGAGGAGATTAGGAGAAGGTCCCCCTTCAAGGTTGCTGGCTTTGCTGACCATCCT----TGTCA-------TAGGAACAGAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138997790 311 + 157549271 aaaaGGAGGAAAGGATTAATAAC-AGACTCCTAGGCTTTAAAGCAGCCTCCAGGCCTTAT-TTACTTAGCCAGTAATCCTTCCTTGGAATTCTGTTGTGCCGGCAGCGCCACCCGTGAGATACAATTTTACGAGCACTTTGAAATGAGAAATGTGATGGGCAAATATCAAGTATTGTTAATGATTTATGTAATTATCATTGGATTCATCGCA-----------GCTGCTTCTGTACACTCTCTC--AGCAGGCAGGGAGGAGATTAGGAGAAGGTCCCCCTTCAAGGTTGCTGGCTTTGCTGACCATCCT----TGGCA-------TAGGAACAGAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93120045 322 + 110113093 AAAAGGAGGAAAGTGTTAATAACAAGACTCCTAAGCTTTAAAGCAGCCTCCAGGCTTTAT-TTACTTAGCCCATAAT-CTTCCTTGGAATTCTGTTGTGCCGGCAGCACCACCCATGAGATATAATTTTACGAGCACTTTGAAATGAGAAATGTGATGGGCACATATCAAGTATTGTTAATGATTTATGTAATTATCATTGGATTCATCGCAGCTGACAGGTGGCTGCTTCTGTACACTCTCTC--AGCAGGCAGGGAGGAGATTAGGAGAAGGTCCCCCTTCAAGGTTGCTGGCTTTGCTGACCATCCT----TGTCA-------TAGGAACAGAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181013728 318 + 198365852 aaaTGGA-GAAAGTGTTAATAAT-AGACTCCTACGCTTTAAAGCAACCTCCAGGCTTTAT-TTACTTATCCCATAATCTTTCCTTGGAATTCTGTTGTGCCGGCAACGCCACCCATGAGATACAGTTTTATGAGCAGTTTGAAATGAGAAATGTGATGGGAAAATATCAAGTATTGTTAATGATTTATGTAATTATCATTGGATTCATCGCAGCTGACAGGTGGCTGCTTCTGAACACTCTCTC--AGCAGGCAG---GGAGATTAGGAGAAGGTCCCCCTTCAAGGTTGCTGGCTTTGCTGACCACCCT----TGTCA-------TAGGAACAGAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174760501 318 + 192294377 aaaTGGA-GAAAGTGTTAATAAT-AGACTCCTACGCTTTAAAGCAACCTCCAGGCTTTAT-TTACTTATCCCATAATCTTTCCTTGGAATTCTGTTGTGCCGGCAACGCCACCCATGAGATACAGTTTTATGAGCAGTTTGAAATGAGAAATGTGATGGGAAAATATCAAGTATTGTTAATGATTTATGTAATTATCATTGGATTCATCGCAGCTGACAGGTGGCTGCTTCTGAACACTCTCTC--AGCAGGCAG---GGAGATTAGGAGAAGGTCCCCCTTCAAGGTTGCTGGCTTTGCTGACCATCCT----TGTCA-------TAGGAACAGAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163430231 318 + 180432695 aaatgga-gaaagtgTTAATAAT-AGACTCCTAGGCTTTCAAGCAACCTCCAGGCTTTAT-TTACTTATCCCATAATCTTTCCTTGGAATTCTGTTGTGCCGGCAACGCCACCCATGAGATACAGTTTTATGAGCAGTTTGAAATGAGAAATGTGATGGGCAAATATCAAGTATTGTTAATGATTTATGTAATTATCATTGGATTCATCGCAGCTGACAGGCGGCTGCTTCTGAACACTCTCTC--AGCAGGCAG---GGAGATTAGGAGAAGGTCCCCCTTCAAGGTTGCTGGCTTTGCTGACCATCCT----TGTCA-------TAGGAACAGAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110459109 318 + 127223203 aaaaGGA-GAAAGTGTTAATAAT-AGACTCCTAGGCTTTAAAGCAACCTCCAGGCTTTAT-TTACTTATCCCATAATCTTTCCTTGGAATTCTGTTGTGCCGGCAACGCCACCCATGAGATACAGTTTTATGAGCAGTTTGAAATGAGAAATGTGATGGGCAAATATCAAGTATTGTTAATGATTTATGTAATTATCATTGGATTCATCGCAGCTGACAGGTGGCTGCTTCTGAACACTCTCTC--AGCAGGCAG---GGAGATTAGGAGAAGGTCCCCCTTCAAGGTTGCTGGCTTTGCTGACCATCCT----TATCA-------TAGGAACAGAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23802883 322 - 128169293 AAAAGGAGGAAAGTGTTAATAAT-AGACTATTAGGCTTTAAAGCAACCTCCAGGTTTTAT-TTACTTAGCCCATAATCTTTCCTTGGAATTCTGTCATGCCAGCAATGTTACCCATGAGATATAGCCTTATGAGCACTTTGAAATGAGAAATGTGATGGGCAAATATCAAGTATTGTTAATGATTTATGTAATTATTATAGGATTCATCACAGCTG-CAGGTGGCTGCTTCTGTATACTCCCTCTTAGGAGGCGGGGAGGAGACCAGGAAAAGGTCCCCCTT-AAGGTTCCTGGGTCTGCTGACCATCCT----TGTCA-------TAGGAACAGAG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52128983 319 -  59632846 ---agaaGAAAAGGATTAACGAG-A----------CGTTAAAACGGTCTCCAGGCTTTATCTTGCTCAGCCCACAATCTTTCCTTGGAATTCCGTTCTGCTGTCAGTGCTACTTAGCAGATACAGCTGTGTAAGCACTTGCACATGAGAAACGTGGCGGCCAAATACGAACTAGTGTCAGTAAATTATGTACTTAGCACTAGAGTCACTGCAA-GGACAGGGGTCTGCTGCTGTGCACTCTCTC--AGGGTGGAAGGAGGAGGTCAAGAGAAGGT-CTTCGTCAGGCCTCCTGGCCTTGCTGAGCACCCTGAGCTGTTAGAGGGGTCAGGAGCgggg
i canFam3.chr16            C 0 I 113
e mm10.chr6                 40441422 254 + 149736546 I

a score=1845405.000000
s hg38.chr7_GL383534v2_alt     77221 586 +    119183 ------------------------CTGT-----------------------------------------------------------GAGGAGTCAGGAGCACTGGAGACCCCTAGTTTCAATGGATTCACATCCACCGCAGCGGCCCCAATCTGGACCTGGTCAGTGTTGCCGCTGCTGATGGATTTGTCCAGGGAGCAGGAGAACATACACTGGTGATTAAAATAAT---GTTTTCTCTAAGTTACTGCAAACTTTCTCCTGTGTAGTTGAGGCAACACTTCCAGTTGTGGTGAGAGATTGAACAAAAGAaa-------aagcatacaatgttaaagctggca-ggacctta-------aagacactgcctagccctctca-ctcagcagtgagTCGTAGATGATTCCTCCAGATCTTGACGAGGCCCACAGGCCCTTGTTTAAGAACGTCGCTTGC----TGCTTTGCTGCTTCTATGGGGCACATTCTGGTGATAAAGGCCAGCTGTTTTTCTCCACCAGCATGGAGTTCTCTCAACTTTGTTTCTGGTTTTTAGAGTCCCTGGCCAATTGTCTGGAGACCCAGAGAGCCACTGTTAGTCTAAGGTCGCTTCATAAATAAGGGTAATCCCGGTCCTGGATTCTGCCAGACTCCTAGAAAGACTGACAGTGAAAGTGTCATTTCTTGCT
s panTro4.chr7             143177195 586 + 161824586 ------------------------CTGT-----------------------------------------------------------GAGGAGTCAGGAGCACTGGAGACCCCTAGTTTCAATGGATTCACATCCACCGCAGCGGCCCCAATCTGGACCTGGTCAGTGTTGCCGCTGCTGATGGATTTGTCCAGGGAGCAGGAGAACATACACTGGTGATTAAAATAAT---GTTTTCTCTAAGTTACTGCAAACTTTCTCCTGTGTAGTTGAGGCAACACTTCCAGTTGTGGTGAGAGATTGAACAAAAGAaa-------aagcatacaatgttaaagctggca-ggacctta-------aagacactgcctagccctctca-ctcagcagtgagTCGTAGATGATTCCTCCAGATCTTGACGAGGCCCACAGGCCCTTGTTTAAGAACGTCGCTTGC----TGCTTTGCTGCTTCTATGGGGCACATTCTGGTGATAAAGGCCAGCTGTTTTTCTCCACCAGCATGGAGTTCTCTCAACTTTGTTTCTGGTTTTTAGAGTCCCTGGCCAATTGTCTGGAGACCCAGAGAGCCACTGTTAGTCTAAGGTCGCTTCATAAATAAGGGTAATCCCGGTCCTGGATTCTGCCAGACTCCTAGAAAGACTGACAGTGAAAGTGTCATTTCTTGCT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138998101 585 + 157549271 ------------------------CTGT-----------------------------------------------------------GAGGAATCAGGAGCACTGGAGACCCCTGGTTTCAATGGATTCACATCCACTGCAGTGGCCCCAGTCTGGACCTGGTCAGTGTTGCCGCTGCTGATGGATTTGTCCAGGGAGCCGGAGAACATACACTGGTGATTAAAATAAT---GTTTTCTCTAAGTTACTGCAAACTTT-TCCTGTGTAGTTGAGGCAACACTTCCAGTTGTGGTGAGAGATTGAACAAAAGAaa-------aagcatacagtgttaaagctggca-ggacctta-------aagacactgcctagccctctca-ctcagcagtgagTTGTAGATGACTCCTCCAGATCTTGACAAGGCCCACAGGCCCTTGTTTAAGAACATCGCTTGC----TGCTTTGTTGCTTCTATGGGGCTCATTGTGGTAATAAACGCCAGCTGTTTTTCTCCACCAGCCTGGAGTTCTCTCAACTTTGTTTCTGGTTTTTAGAGTCCCTGGCCAATTGTCTGCAGGCCCAGAGAGCCACTGTTAGTCTAAGGTCGCTTCATAAATAAGGGTAATCCTAGTCCTGGATTCTGCCAGATTCCTAGAAAGACTGACAGTGAAAGTGTCACTTCTTGCT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93120367 547 + 110113093 ------------------------CTGT-----------------------------------------------------------GAGGAGTCAGGAGCACTGGAGACCCCTGGTTTCAATGGATTCACATCCACTGCAGC---------------------------------------GGATTTGTCCAGGGAGCCGGAGAACATATGCTGGTGATTAAAATAAT---GTTTTCTCTAAGTTACTGCAAACTTTCTCCTGTGTAGTTGAGGCAACACTTGCAGTTGTGGTGAGAGATTGAACAAAAGAaa-------aagcatacaatgttaaagctggca-ggacctta-------aagacactgcctagccctctca-ctcagcagtgagTAGTAGATGACTCCTCCAGATCTTGATGAGGCCCACAGGCCC----TTAAGAAGGTCGCTTGCTGCTTGCTTTGTTGCTTCTATGGGGCACATTCTGGTGATAAAGGCCAGCTGTTTTTCTCCACCAGCCTGGAGTTATCTCAACTTTGTTTCTGGTTTTTAGAGTCCCTGGCCAATTGTCTGGAGGCCCAGAGAGACACTGTTAGTCTAAGGTCACTTCATAAATAAGGGTAATCCCGGTCCTGGATTCTGCCAGATTCCTAGAAAGATTGACAGTGAAAGTGTCATTTCTTGCT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181014046 590 + 198365852 ------------------------CTGT-----------------------------------------------------------GAGGAGTCAGGAGCACTGGAGACCCCTGGTTTCAATGGATCCACATCCACTGCAGCGGCCCCAATCTGGACCTGGTCAGTGTTGCCACTGCTGATGGATTTGTCCAGGGAGCGAGAGAACATACGCTGGTGATTAAAATAAT---GTTTTCTCTAAGTTACTGCAAACTTTCTCCTGTGTAGTTGAGGCAACACTTCCAGTTGTGGTGAGAGATTGGACAAAAGAAAA---AGAaagcatacaatgttaaagctggca-ggacctta-------aagacactgcctagccttctca-ctcagcagTAAGTTGCAGATGACTCCTCCAGATCTTGATGAGGCCCGCAGGCCCTCGTTTAAGAACCTCACTTGC----TGCTTTCTTGCTTCTATGGGGCACATTCTGGTGATGAAGGCCAGCTGTTTTCCTCCACCAGCCTGGAGTTCTCTCAACTTTGTTTCTGGCTTTCAGAGTCCCTGGCCAATTGTCTGGAGGCCCAGAGAGCCACTGTTAGTCTAAGGTCGCTTAAAAAATAAGGCTAATCCCGGTCCTGGATTCTGCCAGATTCCTAGAAAGACTGACAGTGAAATTGTCATTTCGTGCT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174760819 590 + 192294377 ------------------------CTCT-----------------------------------------------------------GAGGAGTCAGGAGCACTGGAGACCCCTGGTTTCAATGGATCCACATCCACTGCAGCGGCCCCAATCTGGACCTGGTCAGTGTTGCCACTGCTGATGGATTTGTCCAGGGAGCGAGAGAACATACGCTGGTGATTAAAATAAT---GTTTTCTCTAAGTTACTGCAAACTTTCTCCTGTGTAGTTGAGGCAACACTTCCAGTTGTGGTGAGAGATTGGACAAAAGAAAA---AGAaagcatacaatgttaaagctggca-ggacctta-------aagacactgcctagccttctca-ctcagcagTAAGTTGCAGATGACTCCTCCAGATCTTGATGAGGCCCGCAGGCCCTCGTTTAAGAACCTCACTTGC----TGCTTTCTTGCTTCTATGGGGCACATTCTGGTGATGAAGGCCAGCTGTTTTCCTCCACCAGCCTGGAGTTCTCTCAACTTTGTTTCTGGCTTTCAGAGTCCCTGGCCAATTGTCTGGAGGCCCAGAGAGCCACTGTTAGTCTAAGGTCGCTTAAAAAATAAGGCTAATCCCGGTCCTGGATTCTGCCAGATTCCTAGAAAGACTGACAGTGAAATTGTCATTTCGTGCT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163430549 590 + 180432695 ------------------------CTGT-----------------------------------------------------------GAGGAGTCAGGAGCACTGGAGACCCCTGGTTTCAATGGATCCACATCCACTGCAGCGGCCCCAATCTGGACCTGGTCAGTGTTGCCACTGCTGATGGATTTGTCCAGGGAGCGAGAGAACATACGCTGgtgattaaaataat---gttttctctaAGTTACTGCAAACTTTCTCCTGTGTAGTTGAGGCAACACTTCCAGTTGTGGTGAGAGAttggacaaaagaaaa---agaaagcatacaaTGTTAAAGCTGGCA-GGACCTTA-------AAGATACTGCCTAGCCTTCTCA-CTCAGCAGTAAGTTGCAGATGACTCCTCCAGATCTTGATGAGGCCCGCAGGCCCTGGTTTAAGAACCTCGCTTGC----TGCTTTCTTGCTTCTATGGGGCACATTCTGGTGATGAAGGCCAGCTGTTTTTCTCCACCAGCCTGGAGTTCTCTCAACTTTGTTTCTGGCTTTCAGAGTCCCTGGCCAATTGTCTGGAGGCCCAGAGAGCCACTGTTAGTCTAAGGTCACTTAAAAAATAAGGCTAATCCCGGTCCTGGATTCTGCCAGATTCCTAGAAAGACTGACAGTGAAATTGTCATTTCGTGCT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110459427 590 + 127223203 ------------------------CTGT-----------------------------------------------------------GAGGAGTCAGGAGCACTGGAGACCCCTGGTTTCAATGGATCCACATCCACTGCAGCGGCCCCAATCTGGACCTGGTCAGTGTTGCCACTGCTGATGGATTTGTCCAGGGAGCGAGAGAACATACGCTGGTGATTAAAATAAT---GTTTTCTCTAAGTTACTGCAAACTTTCTCCTGTGTAGTTGAGGCAACACTTCCAGTTGTGGTGAGAGATTGAACAAAAGAAAA---AGCAAGCATACAATGTTAAAGCTGGCA-GGACCTTA-------AAGACACTGCCTAGGCTTCTTA-CTCAGCAGTAAGTTGCAGATGACTCCTCCAGATCTTGATGAGGACCGCAGGCCCTCGTTTAAGAACCTCGCTTGC----TGCTTTCTTGCTTCTATGGGGCACATTCTGGTGATGAAGGCCAGCTGTTTTTCTACACCAGCCTGGAGTTCTTTCAACTTTGTTTCTGACTTTCAGAGTCCCTGGCCAATTGTCTGGAGGCCCAGAGAGCCTCTGTTAGTCTAAGGTCGCTTAAAAAATAAGGCTAATCCCGGTCCTGGATTCTGCCAGATTCCTAGAAAGACTGACAGTGAAAGTGTCATTTCATGCT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23803205 577 - 128169293 ------------------------CTGT-----------------------------------------------------------GAGGAGTCAGGAGCACTAGAGAACCCTGGTTTCAATGGATCCACATCCACTGCAGCGGCCCCAGTCTGCACCTGCTCAGTGTCGCTGCTGCTGACCGATTTGTTCAGGGAGCTGGAGAACATATGCTGGTCATT-AAATAAT---GTCTTCTCTATGTTACTGCAAACTTTCTTTTGTGTAGTTGAGGCAACACTTTCAGTTGTGATGAGAGATTGAACAAAACAAGA------AGGCATACAATTTTAAAGCTGGCA-GGACCTTA-------AAAACACTGCCTAGTCCTCTCA-CTCAGCCGTGAGTTACAGATGACTCCTTCAGATCTTGACAGGGCCCACAGGCCCTTGTCTAAGAACCTTCTTCTC----TGGTTTGTTGCTTCTATGAGGCACATTCTGGTGATAACGGCCAAC-------ATCCATCAGCCTGGAGTTCTCTCAACTTTATTTCTGGTCTTCAAAGTCCATGGCCAATTGTCTCGAGGCCCAGAGAGCCATGGTTAGTCTAAGGTCGCTTTATAAATAAGGGTGATCCTGGTCCTGGATTCTGCCAGATTCCTAGAAAGATTGACAGTG--AGTGTCATTTCTTGCT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52129415 657 -  59632846 ctgtgtctctgcctctctctctctctgtatgtctctcatgaataaataaaatctttaaaaaTATATATAGATACAATTAAAAAAAAAGAGGAGTCAGGAGCACCTGAAGCTCTGTGCTGCAATGGGCTACCA--CATTGCACCTGC--------------------TGTCACTGCTGCTGGTGGATGTGTCCCCGGAGCTGGCGAACGTATGCTGCTGCTGAACGTAGTCTGCTTTTCTCGAAGTCACTGCAAACTTCCCTCTGTGGGGCTGAAGCAACACTTCCGGTTGTGATGAGAGACGGAGCTAGAGGAGGATGAGGGAGGACATGGGGCTGGAGTGGGCAGGGACCCCAGAGACCCGAGACCCTGCCTAGTCCTCTGGTTTCCTCAGTGAGCTGGAGAGGACTCCTCCCTGCGTCCGCAAGGCCC-CGGGCCCTGGTGGGAGAACGCTGACTGC----TGCCCTGCTGCCTCGCGAGGGCACGTCCTGGGGACCAGGGCCAAC-GGTCCCCTCCACCAGCCTGCACCTCCCTCAGGCTGGCCTCTAGCCTTCACAGCCCAGGCCCAACAGACT-GAGGCCCAGAAAGTGGCTGGCAGCCCCAGCCCTCTTCCAGTCT----CCGCTTCCTGTCCTGGAGCCACCCAGCTTCCCAGAAAGCCT--CGGAGAAGTGTCCCTTTCTTGCT
i canFam3.chr16            I 113 C 0
e mm10.chr6                 40441422 254 + 149736546 I

a score=1973995.000000
s hg38.chr7_GL383534v2_alt     77807 576 +    119183 TGGGAAACCAT------ACTTCACAATGGTTTTCA---------------------ATAGGGCAGACCCATTAAATACATAAGAATCC-AACAACACTCTTTTTTCAGAGTCGGAATGACTCAGTTCTAATTCAGTCTTAAATAAATAATGTGCTGGACCTTTACTTAGGCCTGTTTAAGTG--------------------------TTTTTT---------------------ACAATTCTCTCTCCTGACTTGGGGGACAATTAGGCCAGCATGTTCTTCCTTGGAGCGACAAACTCTCAAA----TAGCTCATTTTCCATGGCCTTAGCTT--TACTTTGACAAAGGAACAGTCTAACCAGGAAGGTGAATAAAAGTTTCCACGTCTTGCAAA-----TTTG----AATAGATAGATTTTCCTGCTTCTGTTCTTCCCATCAACATTTCATAGGCCTCAGAACCAA-GTCTG-GTCAGAGTGGAG-TCTAGGT---GCTTCCTTATCACTCAGCAGTGTGTCTGCAAGGGGAGAACTT--------------------------------------------CCCTCAAGCACACAGTTGAGGGAA-CTCAGCCCTGAGATGCAA-GGCTGCCCGCTTCTTGCACATCTTACTCCTGGGAACTTCGCTT-TCCCCCTGTGCAGCAACTCCTGACA----------------CATTAAGAAAAAAATTCAAA
s panTro4.chr7             143177781 576 + 161824586 TGGGAAACCAT------ACTTCACAATGGTTTTCA---------------------ATAGGGCAGACCCACTAAATACATAAGAATCC-AACAACACTCTTTTTTCAGAGTCAGAATGACTCAGTCCTAATTCAGTCTTAAATAAATAATGTGCTGGACCTTTACTTAGGCCTGTTTAAGTG--------------------------TTTTTT---------------------ACAATTCTCTCTCCTGACTTGGGGGACAATTAGGCCAGCATGTTCTTCCTTGGAGCGACAGACTCTCAAA----TAGCTCATTTTCCATGGCCTTAGCTT--TACTTTGACAAAGGAACAGTCTAACCAGGAAGGTGAATAAAAGTTTCCACGTCTTGCAAA-----TTTG----AATAGATAGATTTTCCTGCTTCTGTTCTTCCCATCAACATTTCATAGGCCTCAGAACCAA-GTCTG-GTCAGAGTGGAG-TCTAGGC---GCTTCCTTATCACTCAGCAGTGTGTCTGCAAGGGGAGAACTT--------------------------------------------CCCTCAAGCACACAGTTGAGGGAA-CTCAGCCCTGAGATGCAA-GGCTGCCCCCTTCTTGCACATCTTACTCCTGGGAACTTCGCTT-TCCCCCTGTGCAGCAACTCCTGACA----------------CGTTAAGAAAAAAATTCAAA
i panTro4.chr7             C 0 I 1
s ponAbe2.chr7             138998686 573 + 157549271 TGGGAAACCAG------ACTTCACAATGGTTTTCA---------------------ATAGGGCAGACCCATCGAATATATAAGAATCC-AACAACACTCTTTTTTC--AGTTGGAATGACTCAGTCCTAATTCAGTCTTAAATGAATAATGTGCTGGACTTTTACTTAGGCCTGTTTAAGTG--------------------------CTTTTT---------------------ACAATTCTCTCTCCTGACTTGGGGGACAATTAGGCCAGCATGTTCTTCCTTGGAGCGACAGACTCTCAAA----TAGCTCATTTTCCATGGCCTTAGCTT--TACTTTGACAAAGGAACAGTCTATCCAGGAAGGTGAATAAAAGTTTCCACCTCTTGCAAA-----TTTG----AATAGATAGATTTTCCTGCTTCTGTTCTTCCCATCAACATTTCATAGGCCTCAGAACCAA-GTCTG-GTCAGAGTGGAG-TCTAGGC---GCTTCCTTGTCACTCAGCAGTGTGTCTGCAAGGGGAGAACTT--------------------------------------------CCCTCAAGCACAGAGTTTAGGGAA--TCAGCCCTGAGATGCAA-GACTGCCTCCTTCTTGCACATCTTACTCCTGGGAACTTCGCTT-TCCCCCTGTGCAGCAACTCCTGACA----------------CATTAAGAAAAAAATTCAAA
i ponAbe2.chr7             C 0 I 1
s nomLeu3.chr13             93120914 573 + 110113093 TGGGAAACCAG------ACTTCACAATGGTTTTCA---------------------ATAGGGCAGTCCCATCAAATATATAAGAATC----CAACACTCTTTTTTCAGAGTTAGAATGACTCAGTCCTGACTCAGTCTTAAACAAATAATGTGCTGGACTTTTACTTAGGCCTGTTTAATTG--------------------------TTTTTT---------------------ACAATTCTCTCTCCTGACTTGGGGGACAATTAGGCCAGCATGTTCTTCCTTGGAGTGACAGACTCTCAAA----TAGCTCATTTTCCATGGCCTTAGCTT--TACTTTGACAAAGGAACAGTCTATCCAGGAAGGTGAATAAAAGTTTCCACCTCTTGCAAA-----TTTG----AATAGATAGATGTTCCTGCCTCTGTTCTTCCCATCAACATTTCATAGGCCTCAGAACCAA-GTCTG-GTCAGAGTGGAG-TCTAGGC---GCTTCCTTAACACTCAGCAGTGTGTCAACAAGGGGAGAACTT--------------------------------------------CCCTCAAGCACACAGTTTAGGGAA-CTCAGCCCTGAGATGGAA-GGTTGCCTCCTTCTTGCACATCTTATTCCTGGGAACTTCGCTT-TCCCCCTGTGCAGCAACTCCTGACA----------------CATTAAGAAAAAAATTCAAA
i nomLeu3.chr13            C 0 I 1
s rheMac3.chr3             181014636 577 + 198365852 TGGGAAACCAG------ACTTCACAATGGTTTTCA---------------------ATGGGACGG-TCCATCAAATATGTAAGAATCC-AACAACATTCTTTTTTCGGAGTTGGAATGACTCAGTCCTAATTCAGTCTTAAATAAATAATGTGCTGGACCTTTACTTAGGCCCGTTTAAGTG--------------------------TTTTTTT--------------------ACAATTCTCTCCCCTGACTGAGGGGACAATTAGGCCAGCATGTTCTTCCTTGGAGCGACAGACTCTCAAA----TAGCTCATTTTCCATGGCCTTAGCTT--TACTTTGACAACGGGACAGTCTATCCAGGAAGGTGAATAAAAGTTTCCACCTCTTGCAAA-----TTTG----AATAGATAGATTTTCCTGCTTCTGTTCTTCCCACCAACATTTCATAGGCCTCAGAACCCA-GTCTG-GTCATAGTGGAG-TCTAGGT---GCTTCCTTATCACTCAGCAGTGTGTCTGCAAGGGGAGAACTT--------------------------------------------CCTTCAAGCACACAGTTTAGGGAA-CTCAGCCCTGAAATGCAAGGGTGGCCTCCTTCTTGCACATCTTATTCCTGGGAACTTCGCTT-TCCCCCTGTGCATCAACTCCTGACG----------------TATTGAGAAAAAAATTCAAA
i rheMac3.chr3             C 0 I 180
s macFas5.chr3             174761409 577 + 192294377 TGGGAAACCAG------ACTTCACAATGGTTTTCA---------------------ATGGGACGG-TCCATCAAATATGTAAGAATCC-AACAACATTCTTTTTTCGGAGTTGGAATGACTCAGTCCTAATTCAGTCTTAAATAAATAATGTGCTGGACCTTTACTTAGGCCCGTTTAAGTG--------------------------TTTTTTT--------------------ACAATTCTCTCCCCTGACTGAGGGGACAATTAGGCCAGCATGTTCTTCCTTGGAGCGACAGACTCTCAAA----TAGCTCATTTTCCATGGCCTTAGCTT--TACTTTGACAAAGGGACAGTCTATCCAGGAAGGTGAATAAAAGTTTCCACCTCTTGCAAA-----TTTG----AATAGATAGATTTTCCTGCTTCTGTTCTTCCCATCAACATTTCATAGGCCTCAGAACCCA-GTCTG-GTCATAGTGGAG-TCTAGGT---GCTTCCTTATCACTCAGCAGTGTGTCTGCAAGGGGAGAACTT--------------------------------------------CCTTCAAGCACACAGTTTAGGGAA-CTCAGCCCTGAAATGCAAGGGTGGCCTCCTTCTTGCACATCTTATTCCTGGGAACTTCGCTT-TCCTCCTGTGCATCAACTCCTGACA----------------TATTGAGAAAAAAATTCAAA
i macFas5.chr3             C 0 I 2
s papAnu2.chr3             163431139 578 + 180432695 TGGGAAACCAG------ACTTCACAATGGTTTTCA---------------------ATGGGATGG-TCCATCAAATATGTAAGAATCC-AACAACATTCTTTTTTCGGAGTTGGAATGACTCAGTCCTAATTCagtcttaaataaataatgtgcTGGACCTTTACTTAGGCCCgtttaagtg--------------------------ttttttt------------------taacAATTCTCTCCCCTGACTGAGGGGACAATTAGGCCAGCATGTTCTTCCTTGGAGCGACAGACTCTCAAA----TAGCTCA-TTTCCATGGCCTTAGCTT--TACTTTGACAACGGGACAGTCTATCCAGGAAGGTGAATAAAAGTTTCTACCTCTTGCAAA-----TTTG----AATAGATAGATTTTCCTGCTTCTGTTCTTCCCATCAACATTTCATAGGCCTCAGAACCCA-GTCTG-GTCATAGTGGAG-TCTAGGT---GCTTCCTTATCACTCAGCAGTGTGTCTGCAAGGGGAGAACTT--------------------------------------------CCTTCAAGCACACAGTTTAGGGAA-CTCAGCCCTGAAATGCAAGGGTGGCCTCCTTCTTGCACATCTTACTCCTGGGAACTTCGCTT-TCACCCTGTGCATCAACTCCTGaca----------------tattgagaaaaaaattcaaa
i papAnu2.chr3             C 0 I 2
s chlSab2.chr21            110460017 568 + 127223203 TGGGAAACCAG------ACTTCACAATGGTTTTCA---------------------ATGGGACGG-TCCATCAAATATGTAAGAATC----CAATATTCTTTTTTCGGAGTTGGAATGACTCAGTCCTAATTCAGTCTTAAATAAATAATGTGCTGGACCTTTACTTAGGCCCGTTTAAGTG--------------------------TTTTTTT--------------------ACAATTCTCTCCCCTGACTGAGGGGACGATTAGGCCAGCATGTTCTTCCTTGGAGCGACAGACTCTCAAA----TAGCTCATTTTCCATGGCCTTAGCTT--TACTTTGACAACGGGACAGTCTATCCAGGAAGGTGAAT--AAGTTTCCACCTCTTGCAAA-----TTTG----AATAGATAGATTTTCCTGCTTCTGTTCTTCCCATCAACATTTCATAGGCCTCAGAACCCA-GTCTG-GTCATAGTGGAG-TCTAGGT---GCTTCCTTATCACTCAGCAGTGTGTCTGCAAGGGGAGAACTT--------------------------------------------CCTTCAAGCACACAGTTTAGGGAA-CTCAGCCCTGAAATGCAA----GGCCTCCTTCTTGCACATCTTACTCCTGGGAACTTCGCTT-TCCCCCTGTGCATCAACTCCTGACA----------------TATTGAGAAAAAAATTCAAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23803782 592 - 128169293 TGGGAAACCAG------AATTCACAATGGTTTTCA---------------------ATGGGGCAGTCCCATCAAATATATGAGAATTC-AGCAACACTATTTCTTCAGAGTTGGAATGACTCAGTCCTAATTCAATCTTAAATAAATAATGTACTGGACCTTTACTTAGGCCTGTTTAAGTG--------------------------TTCTTTTTTTTGTTGTTTGTTTTTCTAACAATTCGCTCTCCTGACTGAGGGGACAATTAGGCCAGCGCGTTCTTCCCTGGAGCTACAGACTCTCGCA----TAGCTCATTTTCCACGGCCTTAGCCT--TACTTTTACGAAGGAACAGTCTATCCAGGAAGGTGAATAAAAGTTTCCACCTCTTGCAGA-----TTTG----AATAGACAGATTTTCTTGCTTCTGTTCTTCT------CATTTCATAGGCCTCAGAACCAAGGTCTG-GTCAGAGTGGAG-TCCAGGT---GCTTCCTTATCACTCAGCAGTGTGTCTGCAAGGGGAGAATTC--------------------------------------------CCCTCAAGCACATAGTCTAGGGAA-CTCAACCC-GAGATGCAAGGTGGGCTTCCTTCTTGCATATCTTACTCCTGGGAACTTTGCTT-TCCCCCTGTGCAGCAACTCCTGACA----------------TATTGAAAAAAAAATTCCAA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40441676 600 + 149736546 TGAGAAGTCAG------ACTTTCCAGTGGTTTCCA---------------------GTGGAATAGTCTCATTAAATATAGGCTATTCTAAATAACAATTTGTGTTT----TCTTAGTGA--CAGGCTTAATTCAATTTTAAATAAA----GTGGTAGAATTTG---------TGTTGAGGTA--------------------------TTTTTT---------------------ACAATTCTCTCTCTTGACTGAGGGACC--TCCAGTCTATATGACCTTCCCTGGAGTGATATGGTCTCAACT---TCTCTCACCTTCCA-GGTTGTAACTCTATACCTTTACAAAAGAGGAGGCTACCTCCGGTGGTGAAAACAGGTATC-ACGCCTTACAAAATCATTTTGTCCCGCCTGGCAGATCTTCCTGCTTCTGCTTCTCCCATCAGTGTTCCTGAGGCC-CTGAACCAG------------AGTGGAT-TC-----------TCCTTATCACTTGGGAGTATGTTTACAAGAGACAacccccacccccacccccacccccacccccacccccacccccacccccacccccaAGCAAGAGACTTAGGGAT-ATGAA---TGCAAGGCAAGGACAGAATCCTTGCTACACATCTTACTTTTGTGATCTTTGGTTATTTTTCTGGGCAGCAAC-----ACAGttttgtttttgtttttattttgtcattattttgt-
i mm10.chr6                I 254 C 0
s canFam3.chr16             52130072 620 -  59632846 TGGGGAACCAGACCTCTACCTCCCAATGGGTCCCAGGGGGTAGGGGGTGGGGGGTGGCGGGGCGG-CTCATCAAATATACTCTAATCC-AACACCTGTATGTTTCGGAGTCTGGAATGACTCCGTCTGAATTCAGTCTTCAATAAATAATGTGCTACAGCTTCCTTTTGGCTTCTTCAGatatatatatatatatatatTTTTTTTTTTTTTTTT--------------------ACAATTCTCCCTCCTGA----GGGAACTATAAGGCCAGCATGTCCTTCCTTGGAGCCATAGACTCTCAAACAAATGGCTCATTTTCCGTGGCCTTAGCTT--TACTTTTGCAA----ACAGTCTACCC-TAAAGGTGAAAATGAGTTTCCACCTCTTCTAAACTGA-TTTG----AATGGACAGACTTTCTTGCTTCTGTTTTTCCCACTGGTGTTTCAGAGGCCTCAGCACCAA-GGTTGCGTCGGAGCAGGGCTCTGAGCCTAGCTTTCTGGCTCCTCAGCAGTG---------GGAGAGAGCTT--------------------------------------------CTCCCAAGCACAGGGTGTAGGGAATCTTAGCCCTGAGATGCAAAGCTGGCTTCCTCCATCGACATC------CTGGGAACATTGCTT-TGCCTCACTGCAGCAACCCCTGAAA----------------CAATAAGAAAAATATTCAAA
i canFam3.chr16            C 0 C 0

a score=890.000000
s hg38.chr7_GL383534v2_alt     78383 1 +    119183 T
s panTro4.chr7             143178358 1 + 161824586 T
i panTro4.chr7             I 1 C 0
s ponAbe2.chr7             138999260 1 + 157549271 T
i ponAbe2.chr7             I 1 C 0
s nomLeu3.chr13             93121488 1 + 110113093 T
i nomLeu3.chr13            I 1 C 0
s macFas5.chr3             174761988 1 + 192294377 C
i macFas5.chr3             I 2 C 0
s papAnu2.chr3             163431719 1 + 180432695 c
i papAnu2.chr3             I 2 C 0
s chlSab2.chr21            110460585 1 + 127223203 C
i chlSab2.chr21            C 0 I 2
s calJac3.chr8              23804374 1 - 128169293 C
i calJac3.chr8             C 0 I 1
s mm10.chr6                 40442276 1 + 149736546 t
i mm10.chr6                C 0 C 0
e canFam3.chr16             52130692 0 -  59632846 C
e rheMac3.chr3             181015213 180 + 198365852 I

a score=268281.000000
s hg38.chr7_GL383534v2_alt     78384 73 +    119183 TTTTTTTAAAAAGTCAAATA-TGGAGTA-TTTTAAACATGATTGAAATATA-TTAATTTATTTCCCCAAattcatc
s panTro4.chr7             143178359 73 + 161824586 TTTTTTTAAAAAGTCAAATA-TGGAGTA-TTTTAAACATGATTGAAATATA-TTAATTTATTTCCCCAAattcgtc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138999261 73 + 157549271 TTTTTTAAAAAAGTCAAATA-TGGAGTA-TTTTAAACATGATTGAAATATA-TTAATTTATTTCCCCAAattcatc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93121489 73 + 110113093 TTTTTTAAAAAAGTCAAATA-TGGAGTA-TTTTAAACATGATTGAAATATA-TTAATTTATTTCCCCAAattcatc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181015393 73 + 198365852 TTTTTTAAAAAAGTCAAATA-CAGAGTA-TTTTAAACATGATTGAAATATA-TTAATTTACTTCCCCAAattcatc
i rheMac3.chr3             I 180 C 0
s macFas5.chr3             174761989 73 + 192294377 TTTTTTAAAAAAGTCAAATA-CAGAGTA-TTTTAAACATGATTGAAATATA-TTAATTTACTTCCCCAAattcatc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163431720 73 + 180432695 tttttttaaaaagtcaaata-cagAGTA-TTTTAAACATGattgaaatata-ttaatttacttCCCCAAATTCATC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110460588 73 + 127223203 TTTTTAAAAAAAGTCAAATA-CAGAGTA-TTTTAAACATGATTGAAATATA-TTAATTTACTTCCCCAAattcatc
i chlSab2.chr21            I 2 C 0
s calJac3.chr8              23804376 73 - 128169293 TTGTTTTTAAAAGTCAAATA-CAGAGTA-TTTTAAACATGATTGAAATATA-TAAATTTATTTCCCCAAatttatc
i calJac3.chr8             I 1 C 0
s mm10.chr6                 40442277 70 + 149736546 ttgtttttCAAAGTGAAATATTTGACTATTTTTAAACAGAACCGAGATATA------CTATTCTCCCAAATCTATC
i mm10.chr6                C 0 C 0
s canFam3.chr16             52130692 72 -  59632846 --CTTTCAAAAAGTCAAATT-TTGAGTA-TTTAAAACAAAACTTAGATGAATTTATTTTGCTTTCCCAAGTCCACT
i canFam3.chr16            C 0 I 401

a score=606877.000000
s hg38.chr7_GL383534v2_alt     78457 177 +    119183 caaaaacaatttattgaacacctactatatgttaggcattaaggGGGAAACCCTCCCCTTTTCCTCTTATTGCCACAGATTACATGGGTCCCCCTTTTGACACATCATCTCAACTATCACCTGAAGCTTTATGCT-GGGATGGATGCCTGTGGGATTAACATATACTGAAGCAGAGAT
s panTro4.chr7             143178432 177 + 161824586 caaaaacaatttattgaacacctactatatgttaggcattaaggGGGAAACCCTCCCCTTTTCCTCTTATTGCCACAGATTACATGGGTCCCCCTTTTGACACATCATCTCAACTATCACCTGAAGCTTTATGTT-GGGATGGATGCCTGTGGGATTAACATATACTGAAGCAGAGAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138999334 177 + 157549271 caaaaacaatttattgaacacctactatatgttaggcattaaggGGAAAACCCTTCCCTTTTCCTCTTATTGCCACAGATTACATGGGTCCCCCTTTTGACACATCATCTCAACTATCACCTGAAGCTTTATGCT-GGGATGGATGCCTGTGGGATTAACATATACTGAAGCAGAGAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93121562 176 + 110113093 ctaaaacaatttattgaacacctactatatgttaggcattaaggGGAAAACCCTCCCCTTTTCCTCTTATTGCCACAGATTACATGGGTCCCCCTTTTGACACATCATCTCAACTATGACCTGAAGCTTTGTGCC-AGGATGGATGCCTGT-GGATTAACATATACTGAAGCAGAGAT
i nomLeu3.chr13            C 0 I 317
s rheMac3.chr3             181015466 170 + 198365852 ctaaaacaatttattaaacccctactatatgtcaggcattAAAGGGAAAACCCTCTCCT-------TTATTGCCACAGATTACATGGGTCCCCCTTTTGACACATCATCTCAACTATGACCTGAAGGTTTATGTC-AGGATGGATGCCTGTGGGATTAACATATACTGAAGCAGAGAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174762062 170 + 192294377 ctaaaacaatttattaaacccctactatatgtcaggcattAAAGGGAAAACCCTCTCCT-------TTATTGCCACAGATTACATGGGTCCCCTTTTTGACACATCATCTCAACTATGACCTGAAGGTTTATGTC-AGGATGGATGCCTGTGGGATTAACATATACTGAAGCAGAGAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163431793 177 + 180432695 ctaaaacaatttattaaacccctactatatgtcaggcattaAAGGGAAAaccctctccttttcctcttatTGCCACAGAGTACATGGGTCCCCCTTTTGACACATCATCTCAACTATGACCTGAAGGTTTATGTC-AGGATGGATGCCTGTGGGATTAACATATACTGAAGCAGagat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110460661 177 + 127223203 ctaaaacaatttattaaacccctactatatgtcaggcattAAAGGGAAAACCCTCTCCTTTTCCTCTTATTGCCACAGATTACATGGGTCCCCTTTTTGACACATCATCTCAACTATGACCTGAAGGTTTATATC-AGGATGGATGCCTGTGGGATTAACATATACTGAAGCAGAGAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23804449 177 - 128169293 caaaaccaatttattgaacacctactatgtgtcaggtattaaggGGAAAA-CCTTTCCTTTTCCTCTTATTGCCATAGATGACATGGGTCCCCCTTTTAACACAGCATCTCAACTATGACCTGAAGCTTTATGCCTGGGATGGATGCCTGTGAGATGAACATTCACTGAAGCAAAGAT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40442347 137 + 149736546 CAAAAACAGTGGACAGAACATCTACTGTGTGTCAGGTGTTAAGGGAAAGGCCC---CCTTTTGCTCCTACTG--ATAGA------------CCCCATTAACAAATTACCCTGATTATT-----AAGGGATGTGT--GGAATGGATGC-----------------GATGAAGCAGAGCT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52131165 166 -  59632846 CAAAAACAATTTATGGAACCCTCACTACGTGTCAGGTACTAAGGGAAAAATTCTCCCTTTTCCC--TTACTGCCACAGATTACCTGTGTTCCCCCTTGGACCCCTCATCTC----ATGATGAGGAGCTGTTTGCCTGGGACGGATGCCTAGGGTATTA------GCTGAAGCAAAGAG
i canFam3.chr16            I 401 C 0

a score=3470971.000000
s hg38.chr7_GL383534v2_alt     78634 1028 +    119183 -GAAATTTTTCATAATGGAAAGAGGCTAAAAATGAAGAA-AAGGCTACAATGTGACCAAAAAAATAGTGAGGCCATGGGCCAGAGGCCATAGGTAGCAC------CTCTAGGGATTCCCTTGGGTCATCCAG-ATCAG-CAA--CTATGCA-ATTCTTATTATTTAGTTGTCCAAATTTGGGATATCTTTTTTGTACTCATTGTTACACCTTTCTTATTCTGAAGACTTAGCCACAATCATTATCTTCTGAGTAACAATACATGAAAAGGTGAATGGTGCAAGTTTCTAACAGTATTAC---------TGCCGATAACATAAGACCTCAACCATTGCAATGGCATAGCTGCCTCCCTAGGCAAACAATGTAGTCATAA----------ATAAGGGTAATCAAGAATTATAGCAAGGGAGAGAGAAAAAGCAGCA---------------------------GGTGAT-AGAAAAAAA--------AAAA-----GAAAACCTGGTCTACTTGGGTAATACCTAATAAACCAGCCC---CTGTGCCCTGTCTACAGGACAATAATATAGCC--AGTGTTTTGAGTCAGTC-CTGTTTTA-CTGAGAGCAAAGCCAGCCTCTAGCT-GCCTGGAGAGGCAGGAATGA----CAAGCCATGGCATGTG----AGGGGAA-ATTCATCAACACCAAGGCTATAGAAAAGAAATC-TATCATCTGGCTTGCTG----ATTTGTAAACAAGA----CACTCCTAGGCTGAGAATCCCAGTTGATAATAATTGCATTACTGGTAACCTATGAGTTCTCCTTTTTCT-TTGATGATTCTGT---------------------------TTTTACTGGCCCCTGTAGGATACTGAATCTCTGACAAAGGTGGGCAGTGAGTTA----CTGCATTTTGTGAGCAATATTTTACCC----CCTGTTGAATTATCTGGGATAGTTTGTGTGGGTGGGAGGCT-GTAGGGAAGGGCCAAGGAAGGATGAATTGGTGTGCCCACCTACAAAGGGCTGGAGCATGAGAAGGCTTTGAGCTG-AAAAAA-CACTTTGAAGTCTCCCCAGTTAGTTTTCATTTGGATTACCCTCCTCAGGAGTTCTGGCTGGGAATGGGGAAG---GAATTAGGAGAAAGTGGTGG
s panTro4.chr7             143178609 1030 + 161824586 -GAAATTTTTCATAATGGAAAGAGGCTAAAAATGAAGAA-AAGGCTACAATGTGACCAAAAAAATAGTGAGGCCATGGGCCAGAGGCCATAGGTAGCAC------CTCTAGGGATTCCCTTGGGTCATCCAG-ATCAG-CAA--CTATGCA-ATTCTTATTATTTAGTTGTCCAAATTTGGGATATCTTTTTTGTACTCATTGTTACACCTTTCTTATTCTGAAGACTTAGCCACAATCATTATCTTCTGAGTAACAATACATGAAAAGGTGAATGGTGCAAGTTTCTAACAGTATTAC---------TGCCGATAACATAAGACCTCAACAATTGCAATGGCATAGCTGCCTCCCTAGGCAAACAATGTAGTCATAA----------ATAAGGGTAATCAAGAATTATAGCAAGGGAGAGAGAAAAAGCAGCA---------------------------GGTGAT-AGAAAAAAA--------AAAA----AGAAAACCTGGTCTACTTGGGTAATAACTAATAAACCAGCCC---CTGTGCCCTGTCTACAGGACAATAATATAGCC--AGTGTTTTGAGTCAGTC-CTGTTTTA-CTGAGAGCAAAGCCAGCCTCTAGCT-GCCTGGAGAGGCAGGAATGA----CAAGCCATGGCATGTG----AGGGGAA-ATTCATCAACATCAAGGATATAGAAAAGAAATCCTATCATCTGGCTTGCTG----ATCTGTAAACAAGA----CACTCCTAGGCTGAGAATCCCAGTTGATAATAATTGCATTACTGGTAACCTACGAGTTCTCCTTTTTCT-TTGATGATTCTGT---------------------------TTTTACTGGCCCCTGTAGGATACTGAATCTCTGACAAAGGTGGGCAGTGAGTTA----CTGCATTTTGTGAGCAATATTTTACCC----CCTGTTGAATTATCTGGGATAGTTTGTGTGGGTGGGAGGCT-GTAGGGAAGGGCCAAGGAAGGATGAATTGGTGTGCCCACCTACAAAGGGCTGGAGCATGAGAAGGCTTTGAGCTG-AAAAAA-CACTTTGAAGTCTCCCCAGTTAGTTTTCATTTGGATTACCCTCCTCAGGAGTTCTGGCTGGGAGTGGGGAAG---GAATTAGGAGAAAGTGGTGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             138999511 1032 + 157549271 -GAAATTTTTCATAATGGAAAGAGGCTAAAAATGAAGAA-AAGGCTACAATGTGACCAAAAAAATAGTGAGGCCATGGGCCAGAGGCCACAGGTAGCAC------CTCTAGGGATTCCCTTGGGTCATCCAG-ATCAG-CAA--CTATACA-GTTCTTATTATTTAGTTGTCCAAATTTGGGATATCTTTTTTGTACTCATTGTTATACCTTTCTTATTCTGAATACTTAGCCACAATCATTATCTTCTGAGTGACGATACATGAAAAGGTGAATGGTGCAAGTTTCTAACAGTATTAC---------TGCTGATAACATGAGACCTCAACCATTGCAACGGCATAGCTGCCTCCCTAGGCAAACAATGTAGTCATAA----------ATAAGGGTAATCAAGAATTATAGCAAGGGAGAGAGAAAAAGCAGCA---------------------------GGTGAT-AGAAAAAAA--------AAAA----AGAAAACCCGGTCTACTTGGGTAATACCTAATAAACCAGCCC---CTGTGCCCTGTCCCCAGGACAATAATATAGCC--AGTGTTTTGAGTCAGTC-CTGTTTTA-CTGAGAGCAAAGCCAGCCTCTAGCTGGCCTGGAGAGGCAGGAATGA----CAAGCCATGGAATGTG----AGGGGAA-ATTCATCAACATCAAGGCTGTAGAAAAGAAATCCTATCATCTGGCTTGCTG----ATTTGTAAACAAGA----CACTCCTAGGCTGAGAATCCCAGTTGATAATAATTGCATTACTGGTAACCTACGAGTTCTCCTTTTTCT-TTGCTGATTCTGT---------------------------TTTTATTGGCCCCTGCAGGATACTGAATCTCTGACAAAGGTGGGCAGTGAGTTA----CTGCATTTTGTGAGCAATATTTTACCC----CCTGTTGAATTATCTGGGATAGTTTGTGTGGGTGGGAGGCTGGTAGGGAAGGGCCAAGGAAGGATGAATTGGTGGGCCCACCTACAAAGGGCTGGAGCATGAGAAGGCTTTGAGCTG-AAAAAA-CACTTTGAAGTCTCCCCAGTTAGTTTTCATCTGGATTACCCTCATCAGGAGTTCTGGTTGGGAATGGGGAAG---GAATTAGGAGAAAGTGGTGG
i ponAbe2.chr7             C 0 M 222
s nomLeu3.chr13             93122055 1034 + 110113093 -GAAAGTTTTCATAATGGAAAGAGGCTAAAAATGAAGAA-AAGGCTACAACATGACCAAAAAAATAGTGAGGCCATGGGCCAGAGGCCATAGGTAGCAC------CTCTAGGGATTCCCTTGGGTCATCCAG-ATCAG-CAA--CTATGCA-ATTCTTATTATTTAGTTGTCCAAATTTGGGATATC-TTTTTGTACTCATTGTTATACCTTTCTTATTCTGAAGACTTAGCCACAATCATTATCTTCTGAGTGATGATACATGAAAAGGTGAATGATGCAAGTTTCTAACAGTATTAC---------TGCCGATAACATGAGACCTCAACCATTGCAATGGCATAGCTGCCTCCCTAGGCAAACAATGTAGTCATAA----------ATAAGGGTAATCAAGAGTTATAGCAAGGGAGAGAGAAAAAGCAGCA---------------------------GGTGAT-AGaaaaaaa--------aaaaaaaaagaaaaTCTGGTCTACTTGGGAAATACCTAATAAACCAGCCC---CTGTGCCCTGTCTCTAGGATAATAATATAGCC--AGTGTTTTGAGTCAGTC-CTGTTTTA-CTGAGAGCAAAGCCAGCCTCTAGCTGGCCTGGAGAGGCAAGAATGA----CAAGCCATGGAATGTG----AGGGGAA-ATTCAACAACATCAAGGCTGTAGAAAAGAAATCCTATTATCTGGCTTGCTG----ATTTGTAAACAAGA----CACTCCTAGGCTGAGAATCCCAGTTGCTAATAATTGCATTACTGGTAACCTACGAGTTATCCTTTTTCT-TTGATGATTCTGT---------------------------TTTTATTGGCCCCTGTGGGATACTGAATCTCTGACAAAGGTGGGCAGTGAGTTA----CTGCATTTTGTGAGCAACATTTTACTC----CCTGTTGAATTATCTGGGATAGTTTGTGTGGGTGGGAGGCT-GTAGGGAAGGGCCAAGGAAGGATGAATTGGTGTGCCCACCTACAAAGGGCTGGAGCATGAGAAGGCTTTGGGCTG-AAAAAA-CACTTTGAAGTCTCCCCAGTTAGTTTTCATCTGGATTACCCTCGTCAGGAGTTCTGGTTGGGAATGGGGAAG---GAATTAGGAGAAAGTGGTGG
i nomLeu3.chr13            I 317 C 0
s rheMac3.chr3             181015636 1045 + 198365852 -AAAATTTTTCATAATGGAAAGAGGCTAAAAATTAAGAA-AAGGCTACAACATGACCAAAAAAATAGTGAGGCCAT--------------AGGTAGCAC------CTCTAGGGATTCCCTTGGGTCATCCAG-ATCAGTTAA--CTATGCA-ATTCTTATTATTTAGTTGTCCAAATTTGGAATATCTTTTTTGTGCTCATTGTTACACCTTTCTTATTCTGAAGACTTAGCCACAATCATTATCTTCTAAGTCACAATACATGAAAAGGTGAATGGTCCAAGTTTCTAACAGTATTAC---------TGCTGATAACATGAGATCTCAAGCATTGCAATGGCATAGCTGCCTCCCTAGGCAAACAATGTAGTCATAA----------ATATGGGTAATCAAGAAGTATAGCAAGGGAGAGAGAAAAAGCAGCA---------------------------GGTGAC-GAAAAAAAA--------AAAA----AGAAAACCTGGTCTACTTGGGTAATACCCAATAAACCAGCCC---CTGTGCCCTGCCTCCAGGACAATAATATAGCA--GGTGTTTTGAGTCAGTC-CTGCTTTA-CTGAGAGCAAAGCCAGCCTCTAGCTGGCCTGGAGAGGCAGGAATGA----CAAGCCATGGAATGGG----AGGGGAA-ATTGATCAACATCAAGGCTGTAGAAAAGAAATTCTATCACCTGGCTTGCTA----ATTTGTAAACAAGA----CACTCCTAGGCTGAGAATCCCAGTTGATAATAATTGCATTACTGGTAACCTACAAGTTCTCCTTTTTCT-TTGATTATTCTGGTTGtttttttttttttttttttttttttttttttGGCCCCTGTAGGATGCTGAATCTCTGGCAAAGGTGGGCAGTGAGTGA----TTGCATTTTGTGAGCAATATTTTACCC----CCTGTTGAATTATCTGGCATAGTTTGTGTGGGTAGGAGGCT-GTGGAGAAGGGCCAAGGAAGGATGAATTGGTGTGCCCACCTACAAAGGGCTGCAGCATGAGAAGGCTTTGAGCTG-AAAAAA-CACATTCAAGTCTCCCCAGTTAGTTTTCATTTGGATTGCCCTCGTCAGGAGTTCTGGTTGGGAATGGGGAAG---GAATTAGGAGAAAGTGGTGG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174762232 1027 + 192294377 -AAAATTTTTCATAATGGAAAGAGGCTAAAAATTAAGAA-AAGGCTACAACATGACCAAAAAAATAGTGAGGCCAT--------------AGGTAGCAC------CTCTAGGGATTCCCTTGGGTCATCCAG-ATCAGTTAA--CTATGCA-ATTCTTATTATTTAGTTGTCCAAATTTGGAATATCTTTTTTGTGCTCATTGTTACATCTTTCTTATTCTGAAGACTTAGCCACAATCATTATCTTCTAAGTCACAATACATGAAAAGGTGAATGGTCCAAGTTTCTAACAGTATTAC---------TGCTGATAACATGAGATCTCAAGCATTGCAATGGCATAGCTGCCTCCCTAGGCAAACAATGTAGTCATAA----------ATATGGGTAATCAAGAAGTATAGCAAGGGAGAGAGAAAAAGCAGCA---------------------------GGTGACGGAAAAAAAA--------AAAA----AGAAAACCTGGTCTACTTGGGTAATACCCAATAAAGCAGCCC---CTGTGCCCTGCCTCCAGGACAATAATATAGCA--GGTGTTTTGAGTCAGTC-CTGCTTTA-CTGAGAGCAAAGCCAGCCTCTAGCTGGCCTGGAGAGGCAGGAATGA----CAAGCCATGGAATGGG----AGGGGAA-ATTGATCAACATCAAGGCTGTAGAAAAGAAATTCTATCACCTGGCTTGCTA----ATTTGTAAACAAGA----CACTCCTAGGCTGAGAATCCCAGTTGATAATAATTGCATTACTGGTAACCTACAAGTTCTCCtttttct-ttgattattctgg-------------------tttttttttttttttGGCCCCTGTAGGATGCTGAATCTCTGGCAAAGGTGGGCAGTGAGTGA----TTGCATTTTGTGAGCAATATTTTACCC----CCTGTTGAATTATCTGGCATAGTTTGTGTGGGTGGGAGGCT-GTGGAGAAGGGCCAAGGAAGGATGAATTGGTGTGCCCACCTACAAAGGGCTGCAGCATGAGAAGGCTTTGAGCTG-AAAAAA-CACATTCAAGTCTCCCCAGTTAGTTTTCATTTGGATTGCCCTCGTCAGGAGTTCTGGTTGGGAATGGGGAAG---GAATTAGGAGAAAGTGGTGG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163431970 1049 + 180432695 -aaaatttttcataatggAAAGAggctaaaaattaagaa-aaggctACAACATGACCaaaaaaaTAGTGAGGCCAT--------------AGGTAGCAC------CTCTAGGGATTCCCTTGGGTCATCCAG-ATCAGTTAA--CTATGCA-ATTCTTATTATTTAGTTGTCCAAATTTGGGATATCTTTTTTGTGCTCATTGTTACACCTTTCTTATTCTGAAGACTTAGCCACAATCATTATCTTCTGAGTCACAATACATGAAAAGGTGAATGGTCCAAGTTTCTAACAGTATTAC---------TGCTGATAACATGAGATCTCAAGCATTGCAATGGCATAGCTGCCTCCCTAGGCAAACAATGTAGTCATAA----------ATATGGGTAATCAAGAAGTAtagcaagggagagagaaaaagcagca---------------------------ggtgat-gaaaaaaaaagaaaaagaaaa----agaaaacctggtcTACTTGGGTAATACCCAATAAACCAGCCC---CTGTGTCCTGCCTCCAGGACAATAATATAGCA--GGTGTTTTGAGTCAGTC-CTGCTTTA-CTGAGAGCAAAGCCAGCCTCTAGCTGGCCTGGAGAGGCAGGAATGA----CAAGCCATGGAATGGG----AGGGGAA-ATTGATCAACATCAAGGCTGTAGAAAAGAAATTCTATCACCTGGCTTGCTA----ATTTGTAAACAAGA----CACTCCTAGGCTGAGAATCCCAGTTGATAATAATTGCATTACTGGTAACCTACAAGTTCTCCTTTTTCT-TTGattattctgtttgtttttttttttt----ttttttttttttttttgcccctgtAGGATGCTGAATCTCTGGCAAAGGTGGGCAGTGAGTGA----TTGCATTTTGTGAGCAATATTTTACCC----CCTGTTGAATTATCTGGCATAGTTTGTGTGGGTGGGAGGCT-GTGGAGAAGGGCCAAGGAAGGATGAATTGGTGTGCCCACCTACAAAGGGCTGCAGCATGAGAAGGCTTTGAGCTG-AAAAAA-CACATTCAAGTCTCCCCAGTTAGTTTTCATTTGGATTACCCTCGTCAGGAGTTCTGGGTGGGAATGGGGAAG---GAATTAGGAGAAAGTGGTGG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110460838 1032 + 127223203 -GAAATTTTTCATAATGGAAAGAGGCTAAAAATTAAGAA-AAGGCTACAACATGACCAAAAAAATAGTGAGGCCAT--------------AGGTAGCAC------CTCTAGGGATTCCCTTGGGTCACCCAG-ATCAGTTAA--CTATGCA-ATTCTTATTATTTAGTTGTCCAAATTTGGGATATCTTTTTTGTGCTCATTGTTACACCTTTCTTATTCTGAAGACTTAGCCACAATCATTATCTTCTGAGTCACAATACATGAAAAGGTGAATGGTCCAAGTTTCTAACAGTATTAC---------TGCTGATAACATGAGATCTCAAGCATTGCAATGGCATAGCTGCCTCCCTAGGCAAACAATGTAGTCATAA----------ATATGGGTAATCAAGAAGTATAGCAAGGGAGAGAGAAAAAGCAGCA---------------------------GGTGAT-GAAAAAA----------AAAA----AGAAAACCTGGTCTACTTGGGTAATACCCAATAAACCAGCCC---CTGTGTCCTGCCTCCAGGACAATAATATAGCA--GGTGTTTTGAGTCAGTC-CTGCTTTA-CTGAGAGCAAAGCCAGCCTCTAGCTGGCCTGGAGAGGCAGGAATGA----CAAGCCATGGAATGGG----AGGGGAA-ATTGATCAACATCAAGGCTGTAGAAAAGAAATTCTATCACCTGGCTTGCTA----ATTGGTAAACAAGA----CACTCCTAGGCTGAGAATCCCAGTTGATAATAATTGCATTACTGGTAACCTACAAGTTCTCCtttttct-ttgattattctgt-------tttttgtt----tttttttgtttttttGGCCCCTGTAGGATGCTGAATCTCTGGCAAAGGTGGGCAGTGAGTTA----TTGCATTTTGTGACCAATATTTTACCC----CCTGTTGAATTATCTGGCATAGTTTGTGTGGGTGGGAGGCT-ATGGAGAAGGGCCAAGGAAGGATGAATTGGTGTGCCCACCTACAAAGGGCTGCAGCATGAGAAGGCTTTGAGCTG-AAAAAA-CACATTCAAGTCTCCCCAGTTAGTTTTCATTTGGATTACCCTCGTCAGGACTTCTGGTTGGGAATGGGTAAG---GAATTAGGAGAAAGTGGTGG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23804626  981 - 128169293 -GAAATGTTTCACAATGGAAAGAGGCTAAGAATGAAGAA-AAGGCTACAACATGACCAAAAAAATAGTGAGGCCATGGGCCAGAGGCCG-------------------TAGGGATTCCCTTGGGTCATCAAG-ATCAG-CAAGGCCATCAAGATTCTTACTATTTAGTTGTCCAAATCTGGGATATCTTTTTTGTAC---TTGTTATTCATTTCTTATTCTGAAGACTTAGCCACAGTCATTACCATCTAAGTGAGGTTACATGAAAAGGTGAATCGTGCAAGCTTCGAACAGTATTAC---------TGCTGATAACATGAGATCTAAACCACTGCAATGGCACAGCTGCCTCCCTAGGCAAACAGTGCAGTCATAA----------ATAAGGGTAATCACCAACTATTGCAAGGGAGAGAGAAAAGGCAGCA---------------------------GG-----AAAAAAAAA--------AACA----------CCTGGTCAACTTGGGTAATACCCAATAAACCAGCCC---CTGTGCCCTGCCTCCAGGACAGTAATATAACC--AGTGTTTCGAGTCAGTC-CTATATCA-CTGAGAGCAAAGCCAGCCTCTAGCTAGCCTGGAGAGGCAGGAATGA-----AAACCATGGAATGGC----AGGGGAA-GCTGATCAACATCAAGGCTATAGAAAAGAAATCCTATGACCTGGCTTGCTG----ATTTGTAAACACGA----TACTCCTAGGCTGAGAATTCCAGTTGATAATAATTGCATTACTGGTAACCTGCAAATTCT-CGTTTTCT-TTGATGATTCCGT---------------------------ATTTATTGGCTC----------CTGAGTCTCTGACAAAGGTGGGCAGTGAGTTA----CTGCATTTTGTGAATAGTATTTTACCC----CCTGTTAAATTATCTGGGACAGTTTGTGTGGGTGGGAGGGT-GTAGGGAAGGGCCAAGGAAGGATGAATTGGTGTGTCCACCTACAAAGGGCTGGAGCATGAGGAGGCTTTGAGCTGAAAAAAA-CACTTTCAAGTCTCCCCAGTTA----------------CCCTCTTTGGGAGTTCTGGTTGGGAATGGGGAAG---GAATTAGGAGAAAGTGGTGG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40442484  946 + 149736546 -GGACTGCTCCAGAGCACGAGAAGGCAAAGAATGGAGAG-CAAAGTATAAC-TGACCCTGGAAGTGGTGAGGCCCCAGGCAG--------AGGCAAGACGCGAAACTCTAGGGCGCTCCTTGGGTCACGGGGAATCAG-CGG--CTGTTCA-GTTCTCAT--------------------GGATTTC------------------------------------------AACCCCAG--AATAACATGGAACTGACAAGTGGTGAAGA-GTGTAGAGTTAGAG--TCTAATAGAATTGC---------CATTGGCAACACAAGATCTCGACC------------CAGTTCCCTCCCCAGGCAAACAATTTAGCCATAAGTCACTTATTATATTTGTAATTAAGAAGTCTAAC-AGGGAGAGAGGAAAGGCGGCG---------------------------CACAGT-GGTAA------------GCAA----TGATCATCTGATTTACCTGGGAAGCACCCACCCAATCAGCGCTAGCTAAGCCC-GCCTCCAGGTCCAGGATACACTT--GGTGTTTTATGTCAGGCTCTATTCTG-TTGGGAGCAAGGCCAACAACCGGCTGGCCCAGAGA---AGAAGTGG----CAAGTGATGTGACGCGAGGAAGGGAGA-ACTGACCTACTCGGAGGCGGTGGGGAAAGGATCAGATCACCTGGTTCACTG----GCTTGTAACCAAGAA-CCTGCTCCTGGGCTCAGAATTTCAGCTGATGGTGACTTCTCTGTTGGTAACCTGT--GCCTTCCTTTCCCT-TGGATGGTT-------------------------------TTTTATGGCCACCCGTGGAACGCTGAGCCTCTGATAAAGGTGGGCACTGAGTCT----TCACATTCGGAGAGGGCTATCCCACCCACTGCCTGTTCAAGTACCTGGGACAGTGTGAGGGGGTGGG------GCTGAGGAAGACAAAGGAAAGGT-CATTAGTGGGCCACCCGCCAAAGCGCTGCCTCAGGAGGAAGCCTTTAGCCG-AGGGTA-GGATT-----TCTCACTCCTCGGTTTTCATGTAGGTTGCTCTCTCCATGAGTTCCTGCTAGAGATGGG--AA---GAAGTGGGA-ACAGCTGTGA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52131331 1069 -  59632846 GAAAATTTTTCATCATGTGCAGACGCTGAGAGCAAAGAACAAGAGTGAGGCAAGACGCCTCAAAGAGTGGGGCTGTGGGCCAGAGGCAAAATGCAG-GC------TTCTGGGGCTTCCCTTAGGCCGTCAAG-GTCAG-GAC--CTGCCCA-ATTCCCATTATTC-GCTTTCCAACTTGGGAGCATCTTCTTTGTACTTGTTATTATGCCTTTCTTGTTCTGAAGCCTTAGC----ACAATTGTCCTTCGAGTGACAATACGCGAAAAGGTGAATGGTGCACGTTTCTAACCGAAGCACCACTGGTGATGCTGGTGACCTGGGACCCAAACCATAACAACGGCACAGCTGCCTCCCTAGGTAGGTGGTGTGGTCGTAA----------GTGAGGGTGACTGAGAACTCTAGCAAGGCCGAGAGGAAAGGGGGAGTATGTGTGTGTGTGTGTGTGGGGGGGTGGTGAT-GGTAA------------AAAA-----------CTGGTGTCTCTAGTTAACGCCCCATGAACTGGGCC---CCGTGCCCTGCCTGCATGCCTGGGATTCGCTCAGAGTGTTTCCAATGAGTC-CCGTCCTGCCTGAGAGTGGACCCAGGCT-TGGCTAGCCTAGGGCTCCAAGAATGACGGACGACCCATGGCCTAAG----AGGGGAACACTGGTCAACACCAAGGCTACGGCAAGGAA----TATCACCTGGCCTGCCGTGATAGTTGCAAATAAGGATCTCACTCCCAAAGCCTGGATCTCAGCTCACAGCAATTTCTTTACTTATAACC--AGAGTCCTCCTTTTCCTGTTGATGACTTAAT---------------------------CGTCTCTAGCCCCTGCGGGATGGGGGAACCCTGCCAGAGGTGGGCAGTGAGTGAGTTTGTGCCTGCCATGAGCAACGTGATGTC-----CCTGTGGAATGATTTGGGAAGGTCGGCACCGGCGGGATGGG-CTAGGGAAGGTCAAGAGAAGGATCCAGTGGTGTGCACACCTGTAAAAAGCAGGAGCATGAGAAGCCTTTTAGCTG-AAAAAGTTACTTTTACATCCTCCCGGTTAGTTTTCACGTGGATTAACGTCCTCATGAGCTCAGGTCAGAGATGGGAAAGATTGAGAAAGGAGAAAGGACTGA
i canFam3.chr16            C 0 C 0

a score=100735.000000
s hg38.chr7_GL383534v2_alt     79662 32 +    119183 AGAGATCTGTGAAAAGAG-GGA-AATGGAAGAGG
s panTro4.chr7             143179639 32 + 161824586 AGAGATCTGTGAAGAGAG-GGA-AATGGAAGAGG
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93123089 32 + 110113093 AGAGATCTGTGAAGAGAG-GGA-AGTGGAAGAGG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181016681 32 + 198365852 AGAGATCTGTGAAGAGAG-GTA-AATGGAAGAGG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174763259 32 + 192294377 AGAGATCTGTGAAGAGAG-GTA-AATGGAAGAGG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163433019 32 + 180432695 AGAGATCTGTGAAGAGAG-GTA-AATGGAAGAGG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110461870 32 + 127223203 AGAGATCTATGAAGAGAG-GTA-AATGGAAGAGG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23805607 32 - 128169293 AGAGATCTGTGAAGAGAG-GGA-AATGGAAGAGG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40443430 33 + 149736546 AGGGACCAGTGGGGAGAG-GGAGAATGGAAGAGG
i mm10.chr6                C 0 I 39
s canFam3.chr16             52132400 30 -  59632846 AGGGAT---TGAAGGGGGAGGA-AATGGAAGACT
i canFam3.chr16            C 0 C 0
e ponAbe2.chr7             139000543 222 + 157549271 M

a score=69420.000000
s hg38.chr7_GL383534v2_alt     79694 31 +    119183 GGTGACAGGTAG--------CAAAGACTATAAAGAGAAG
s panTro4.chr7             143179671 31 + 161824586 GGTGACAGGTAG--------CAAAGACTATAAAGAGAAG
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93123121 31 + 110113093 GGTGACAGGTAG--------CAAAGACTATAAAGAGAAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181016713 31 + 198365852 CTTGACAGGTAT--------CAAAGTCTGTAAAGAGAAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174763291 31 + 192294377 CTTGACAGGTAT--------CAAAGTCTGTAAAGAGAAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163433051 31 + 180432695 CTTGACAGGTAT--------CAAAGTCTGTAAAGAGAAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110461902 31 + 127223203 CTTGACAGGTAT--------CAAAGTCTGTAAAGAGAAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23805639 31 - 128169293 GGTGACAGGTAG--------CAAACACTATGAAGAGAAG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52132430 38 -  59632846 GGTGATGGGCAACGAGTAACCAAAGACTGT-AAGAGAAG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40443463 39 + 149736546 I
e ponAbe2.chr7             139000543 222 + 157549271 M

a score=646906.000000
s hg38.chr7_GL383534v2_alt     79725 206 +    119183 GGAAATAACATTTGTTTCAAACTC-ATCAAGCTGGCCTTGGTTCCTGTCTCTCTTTGGGCCCATG-TTTATCATGTAAATAATTCCCTATTTGCAGTCCCTCTGAAGCCTCCTTGAGGGGCATGA----------GTGTATCATTTTCCTTTTTCATGGACTG-CCTCTCACATAGTTTTCTTCTATAATGTGATATCAGTGAGGCCTTTTTCCttt-------ga
s panTro4.chr7             143179702 206 + 161824586 GGAAATAACATTTGTTTCAAACTC-ATCAAGCTGGCCTTGGTTCCTGTCTCTCTTTGGGCCCATG-TTTATCATGTAAATAATTCCTTATTTGCAGTCCCTCTGAAGCCTCCTTGAGGGGCACGA----------GTGTATCATTTTCCTTTTTCATGGACTG-CCTCTCACATAGTTTTCTTCTATAATGTGATATCAGTGGGGCCTTTTTCCttt-------ga
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139000774 190 + 157549271 GGAAATAACATTTGTTTCAAACTC-ATCAAG-----------------CTCTCTTTGGGCCCATGTTTTATCATGTAAATAATTCCTCATTTGCGGTTCCTCTGAAGCCTCCTTGAGGGGCATGA----------GTGTATCATTTTCCTTTTTCATGGACTG-CCTCTCACATAGTTTTCTTCTATAATGTGATATCAGTGAGGCCTTCTTCCttt-------ga
i ponAbe2.chr7             M 222 C 0
s nomLeu3.chr13             93123152 206 + 110113093 GGAAATAACATTTGTCTCCAACTC-ATCAAGCTGGCCTTGGTTCCTGTCTCTCTTTGGGTCCATG-TTTACCATATAAATAATTCCTCATTTGCGGTCCCTCTGAAGCCTCCTTGAGGGGCATGA----------GTGTATTATTTTCCTTTTTCATGGACTG-CCTCTCACATAGTTTTCTTCTATAATGTGATATCAGTGAGGCCTTTTTCCTTT-------GA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181016744 205 + 198365852 AGAAATAACATTTGTTTCAAACTC-ATCAAGCT-GCCTTGGTTCCTGTCTCTCTTTGGGCCCATG-TTTATCATGTAAATAATTTCTCATTTGCCGTCCCTCTGAAGCCTCCTTGAGGGGCACGA----------GTGTATCATTTTCCTTTTACATGGACTG-CCTCTCACGTAGTTTTCCCCTATAATGTGATATCAGTGAGGCCTTTTTCCttt-------ga
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174763322 206 + 192294377 AGAAATAACATTTGTTTCAAACTC-ATCAAGCT-GCCTTGGTTCCTGTCTCTCTTTGGGCCCATG-TTTATCATGTAAATAATTTCTCATTTGCCGTCCCTCTGAAGCCTCCTTGAGGGGCACGA----------GTGTATCATTTTCCTTTTACATGGACTGCCCTCTCACGTAGTTTTCTCCTATAATGTGATATCAGTGAGGCCTTTTTCCttt-------ga
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163433082 205 + 180432695 GGAAATAACATTTGTTTCAAACTC-ATCAAGCT-GCCTTGGTTCCTGTCTCTCTTTGGGCCCATg-tttattatgtaaataatttctcatttgcCGTCCCTCTGAAGCCTCCTTGAGGGGCACGA----------GtgtatcattttccttttacatGGACTG-CCTCTCACATAGTTTTCTCCTATAATGTGATATCAGTGAGGCCTTTTTCCTTT-------GA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110461933 205 + 127223203 GGAAATAACATTTGTTTCAAACTC-ATCAAGCT-GCCTTGGTTCCTGTCTCTCTTTGGGCCCATG-TTTATCATGTAAATAATTTCTCATTTGCCATCCCTCTGAAGCCTCCTTGAGGGGCACTA----------GTGTATCATCTTCCTTTTACATGGACTG-CCTCTCACATAGTTTTCTCCTATAATGTGATATCAGTGAGGCCTTTTTCCttt-------ga
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23805670 210 - 128169293 GGAAGTAGCATTTGTTTTAAACTC-ATCAAACT-GCCTTGATTCCTGTCTCTCTTCGGGCCCATG-TTTATCATGTAAACAATTCCTCATTTGCAGTCCTTCTGAAGCCTCCTC-AGGGGCACCA----------GTGTATCATTTTCCTTTTTCAGGGAAAA--CTCTCACATAGTTTTCTCCTAGAGTGTAATATCAGTGAGGCTTTTTTCCTTTTACtttgga
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52132468 211 -  59632846 AGAAATTAACTTTGTTTCAGCCAAGATCAAACCATCCTCAGCAC----CTCTCTTC-GGCCCACG-TCTATCAGGTACATAATTTCACGTGTCCAGTACCTCTAGGGTCTCCCCTGAAGGTACAAGAAGGCTCATGTATATCATTTTCCTATTCCATGGATGA-CCTTTCACATGG-TTTCTCCTACAAAGTGGTATCGGTGACTTTTTTTTTATTC-------AA
i canFam3.chr16            C 0 I 212
e mm10.chr6                 40443463  39 + 149736546 I

a score=876768.000000
s hg38.chr7_GL383534v2_alt     79931 303 +    119183 tatacctatacattgtgtaatgattaccaaaaATTTACCACACCCATATGCACccatgctgtacatcaggtccccagaattgttcatcttatacctgaaagtgtgtaccctttgatcagcatctccccatttcccctgcctttccagatcctggtaaccaccattctactccctccctctaggagatcaactgtttttgattccacatataagtaagatcatgtagtatctgtctttctgtgcctggcttatttcact------taatatc----cccctggttcatccatgttatcacaaatggcagccttt
s panTro4.chr7             143179908 303 + 161824586 tatacctatacattgtgtaatgattaccaaaaATTTACCACACCCATATGCACccatgctgtatatcaggtccccagaattgttcatcttatacctgaaagtgtgtaccctttgatcagcatctccccatttcccctgcctttccagatcctggtaaccaccattctactccctccctctaggagttcaactgtttttgattccacatataagtaagatcatgtagtatctgtctttctgtgtctggcttatttcact------taatatc----cccctggttcatccatgttatcacaaacggcagccttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139000964 291 + 157549271 tatacctatacattgtgtaatgattaccaaaaaattaccacacccatACGCACccatgctgtacat--------cagaattgttcatcttatacctgaaagtgtgtaccctttgatcagcatctccccatttcccctgcctctccagatcctggtaaccaccattctactccctccctctaggagttcaactgtttttgattccacata----taagatcatgtagtatctgtctttctgtgcctggcttatttcact------taatatc----cccctggttcatccatgttatcacaaacggcaggcttt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93123358 303 + 110113093 TATACCTATATATTGTGTAATGGTTACCAAAAAATTACCACACCCATACGCACccatgctgtacatcaggtccccagaattgttcatcttatacctgaaagtgtgtaccctttgatcagcatctccccatttcccctgcctttccagatcctggtaaccaccattctactccctccctctaggaattcaactgtttttgattccacatataagtaagatcatgtaatatctgtctttctgtgcctggcttatttcact------taatatc----cccctggttcatccatgctatcacaaacggcaggcttt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181016949 309 + 198365852 tatacctatgcattgtgtaacgattaccaaaaaattaccacacccatGCCCACccatgctgtacattaggtccccagaattgttcatcttatatctgaaagtgtgtaccctttgatcagcatctccctatttcccctgcctttccagatcctggtaaccaccattctcctccctccctctaggagttcgactgttttagattccacatataagtaagatcatgtagtatctgtctttctgtgcctggcttatttcactttaacataatgtg----ctccgggttcatccatattgtcacaaacggcagacttt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174763528 309 + 192294377 tatacctatgcattgtgtaacgattaccaaaaaattaccacacccatGCCCACccatgctgtacattaggtccccagaattgttcatcttatatctgaaagtgtgtaccctttgatcagcatctccctatttcccctgcctttccagatcctggtaaccaccattctcctccctccctctaggagttcgactgttttagattccacatataagtaagatcatgtagtatctgtctttctgtgcctggcttatttcactttaacataatgtg----ctccgggttcatccatattgtcacaaacggcagacttt
i macFas5.chr3             C 0 M 1632
s papAnu2.chr3             163433287 309 + 180432695 TATAcctatacattgtgtaatgattaccAAAAAATTACCACACCCATGCCCACCCATGCTGTTCATTAGGTCCCCAGAATTGTTCATCTTATATCTGAAAGTGTGTACCCTTTGATCAGCATCTCCCTATTTCCCCTGCCTTTCCAgatcctggtaaccaccattctcctccctccctctaggAGTTcgactgttttagattccacatataagtaagatcatgtagtatctgtctttctgtgcctggcttatttcactttaacATAATGTG----CTCcgggttcatccatattgtcacaaacGGCAGACTTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110462138 309 + 127223203 tatacctatgcattgtgtaatgattaccaaaaaattaccacacccatGCCCACccatgctgtacattaggtccccagaattgttcatcttatatctgaaagtgtgtaccctttgatcagcatctccctatttcccctgcctttccagatcctggtaaccaccattctcctccctccctctaggagttcgactgttttagattccacatataagtaatatcatgtagtatctgtctttctgtgcctggcttatttcactttaacataatgtg----ctctgtgttcatccatattgtcacaaacggcagacttt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23805880 284 - 128169293 tatacctatacagtgtgtaataattaccaaaaaattaacacacccatGCCCACc--------------------cagaattgttcatttaatatctgaaagtgtgtgccctttgatcagcatctccccacttcccctgcctttccagatcctggtaaccaccattctactccctccctctaggagttcaattgttttagatccgccatgtaagtaagatcatg---tgtctgtctttccgtgcctggcttattttact------taatgtcatgttcccaggtttagccatgttgtcacaaatggcaggattt
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40443463  39 + 149736546 I
e canFam3.chr16             52132679 212 -  59632846 I

a score=61113.000000
s hg38.chr7_GL383534v2_alt     80234 34 +    119183 ccttttttatgactgagtaatattctattgtgtg
s panTro4.chr7             143180211 34 + 161824586 ccttttttatgactgagtaatgttctattgtgtg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139001255 34 + 157549271 ccttttttatgactgagtaatattctattgtgtg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93123661 34 + 110113093 ccttttttatgactgagtaatattctattgtgtg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181017258 34 + 198365852 ccttttatatgaatgagtaatattctattgtgtg
i rheMac3.chr3             C 0 I 6
s papAnu2.chr3             163433596 28 + 180432695 CCTTTTTTATGaatgagtaatattctat------
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110462447 34 + 127223203 ccttttttatgaatgagtaatattctattgtgtg
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23806164 21 - 128169293 ccttttttatggctgaataat-------------
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40443463 39 + 149736546 I
e canFam3.chr16             52132679 212 -  59632846 I
e macFas5.chr3             174763837 1632 + 192294377 M

a score=713525.000000
s hg38.chr7_GL383534v2_alt     80268 270 +    119183 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattcaccacattttctttattcatctgtccatggctatttaggtggtttccatatcttggctgttgaggataatgctgcaatgaatatgggtgtgttggtatttttttgagatagtgattttatttcctttggctatataactggaagagaagagggacagcttgattgtataatagttgtttttttCTTCAAAGAGTTTTCCATCCTTCTCATAGGGGCTTCTCTGAGAAAGAAAT
s panTro4.chr7             143180245 258 + 161824586 tgtgtgtgtgtgtgtgtgtgt------------attcaccacattttctttattcatctgtccatggctatttaggtggtttccatatcttggctgttgaggataatgctgcaatgaatatgggtgtgttggtatttttttgagatagtgattttatttcctttggctatataactggaagagaagagggacagcttgattgtataatagttgtttttttCTTCAAAGAGTTTTCCATCCTTCTCATAGGGGCTTCTCTGAGAAAGAAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139001289 241 + 157549271 tgtgtgt--------------------------atccaccacattttctttattcatctgtccatggatatttaggtggtttccatatcttggctgttgaggataatgctgcaatgaacatgggtgtgttggtatttttttgagacagtgattttatttcctttggctatataactggaagagaagagggatagcttgattgtataata---gtttttttcttCAAAGAGTTTTTCATCCTTCTCATAGGGGCTTCTCTGAGAAAGAAAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93123695 244 + 110113093 tgtgtgt--------------------------ttccaccacattttctttattcatctgttcatggatatttaggtggtttccatatcttggctgttgtggataatgctgcaatgaacatgggtgtgttggtatttttttgagatagtgattttatttcctttggctatataactggaagagaagagggacagcttgagtgtgtaatagttgtttttttCTTCAAAGAGTTTTTCATCCTTCTCATAGGGGCTTCTCTGAGAAAGAAAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181017298 267 + 198365852 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatccactgcgttttctttactcatctgtccatggatatttaggtagtttccatatcttggctgttgtggataatgctgcaatgaacatgggagtgttggtatttttttgagataatgattttattttctttggctatataactggaagagaagagagacagctggattgtataacagtcatttttttcttcaaagaGTTTTTCATC---CTCATGGGGGCTTCTCTGAGAAAGAAAT
i rheMac3.chr3             I 6 C 0
s macFas5.chr3             174765469 267 + 192294377 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATCCactgcgttttctttactcatctgtccatggatatttaggtagtttccatatcttggctgttgtggataatgctgcaatgaacatgggagtgttggtatttttttgagataatgattttattttctttggctatataactggaagagaagagagacagctggattgtataacagttgtttttttCTTCAAAGAGTTTTTCATC---CTCATGGGGGCTTCTCTGAGAAAGAAAT
i macFas5.chr3             M 1632 C 0
s papAnu2.chr3             163433624 254 + 180432695 ----------------tgtgtgtgtgtgtgtgtatccactGCGTTTTCTTTACTCATCTGTCCACGGATATTTAGGtagtttccatatcttggctgttggggataatgctgcaatgaacatgggagtgttggtatttttttgagataatgattttattttctttggctatacaactggaagagaagagagacagcTGGATTGTATAACAGTcgtttttttcttcaaagagtttTTCATCCTTCTCATGGGGGCTTCtctgagaaagaaat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110462481 256 + 127223203 --------------tgtgtgtgtgtgtgtgtgtatccactgcgttttatttactcgtctgtccatggatatttaggtagtttccgtatcttggctgttgtggataatgctgcaatgaacataggagtgttggtatttttttgagataatgattttattttctttggttatataactggaagagaagagagacagctggattgtataatagttgtttttttCTTCAAAGAGTTTTTCATCCTTCTCATGGGGGCTTCTCTGAGAAAGAAAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23806185 262 - 128169293 -gtgtgtgtgtgtgtgtgtgtgtgtgtgtccgtgtccaccacattttctctattcaactgtccatggatattgaggtggtttccataacttggctgctgtgaataatgctgcagtgaacatgggggta-------ttttttgagatagtgattttactgcctttggctatataactggaagagaagagggagagctgtattatataatagttgttattttCTTCAAAGAGTTTTTCATCCTTCTCATGGGAGCTTCTCTGAGAAAGAAAT
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40443463  39 + 149736546 I
e canFam3.chr16             52132679 212 -  59632846 I

a score=1186776.000000
s hg38.chr7_GL383534v2_alt     80538 332 +    119183 TAAATAATGTGTACTAAAGATATTAAAAAGCATTTTACAATATAAGGCATTTTTGGCAGAAGCCATTGCTGTTTTCCAGTGATCAATATCTGTTTCTATGGTTTGTTGATCTTTCTAGCCTTTCTTTTGTCAGTTTAAATTTTTGTTCAATTCCCTAGAAGCTTTAACTGCTAACAGCTAACAGCTGCAGGAGG----------------GAGATGCCTGAATTAGGGCAGGTGTGTTTGGCACAGAGCTAAGCTGTGTCTCTGTCAGGGATACAAACTCCAGTCAAGATATGTTAGAGGCTGTTTAAGGATCATTATGATAGCCAGGTGATGCTA------AATTGTAATTAC
s panTro4.chr7             143180503 332 + 161824586 TAAATAATGTGTACTAAAGATATTAAAAAGCATTTTACAATATAAGGCATTTTTGGCAGAAGCCATTGCTGTTTTCCAGTGATCAATATCTGTTTCTATGGGTTGTTGATCTTTCTAGCCTTTCTTTTGTCAGTTTAAATTTTTGTTCAATTCCCTAGAAGCTTTAACTGCTAACAGCTAACAGCTGCAGGAGG----------------GAGATGCCTGAATTAGGGCAGGTGTGTTTGGCACAGAGCTAAGCTGTGTCTCTGTCAGGGATACAAACTCCAGTCAAGATATGTTAGAGGCTGTTTAAGGATCATTATGATAGCCAGGTGATGCTA------AATTGTAATTAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139001530 332 + 157549271 TAAATAATGTGTACTAAAGATATTAAAAAGCATTTTACAATATAAGGCATTTTTGGCAGAAGCCATTGCTGTTTTCCAGTAATCAATATCTGTTTCTATGGGTTGCTGATCTTTGTAGCCTTTCTTTTGTCAGTTTAAATTTTTGTTCAATTCCCTAGAAGCTTTAACTGCTAACAGCTAACAGCTGCAGGAAG----------------GAGATGCCTGAATTAGGGCAGGTGTGTTTGGCACAGAGCTAAGCTGTGTCTCTGTCAGGGATACAAACTCCAGTCAAGATATGTTAGAGGCTGTTTAAGGATCATTATGATAGCCAGGTGATGCTA------AATTGTAATTAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93123939 330 + 110113093 TAAATAATGTGTACTAAAGATATTAAAAAGCATTTTACAATATAAGGCATTTTTGGCAGAAGCCATTGCTGTTTTCCCATGATCAATATCTGTTTCTACGGGTTGCTGATCTTTCTAGGCTTTGTTTTGTCAGTTTAAATTTTTGTTCAATTCCCTAGAAGCTTTAACTGCTAAGAGCTAACAGCTGCAGGAGG----------------GAGATGCCTGAATTAGGGCAGGTGTGTTTGGCACAGAGCTAAGCTGTG--TCTGTCAGGGATATAAACTCCAGTCAAGATATGTTAGAGGCTGTTTAAGGATCATTATGATAGCCAGGTGATGCTA------AATTGTAATTAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181017565 332 + 198365852 TAAATAACGTGTACTAAAGATATTAAAGAGCGTTTTACAAAATAAGGCATTTTTGGTAAAAGCCATTGCTGTTTTCCAGTGATCAATATCTGTTTCTATGTGTTGCTGATCTTTCTAGCCTTTCTTTTGTCAGTTTAAATTTTTGTTCAATTCCCTAGAAGCTTTAACTGCTAACAGCCAACAGCTGCAGGAGG----------------GAGATGCCTGAATTAGGGCAGGTGTGTTTGGCACAGAGCTAAGCTGTGTCTCTGTCAGGGATACAAACTCCAGTCAAGATATGTTAGAGGCTGTTTAAGGATCATTATGATAGCCAGGTGATGCTA------AATTGTAATTAC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174765736 332 + 192294377 TAAATAACGTGTACTAAAGATATTAAAGAGCGTTTTACAAAATAAGGCATTTTTGGTAAAAGCCATTGCTGTTTTCCAGTGATCAATATCTGTTTCTATGTGTTGCTGATCTTTCTAGCCTTTCTTTTGTCAGTTTAAATTTTTGTTCAATTCCCTAGAAGCTTTAACTGCTAACAGCCAACAGCTGCAGGAGG----------------GAGATGCCTGAATTAGGGCAGGTGTGTTTGGCACAGAGCTAAGCTGTGTCTCTGTCAGGGATACAAACTCCAGTCAAGATATGTTAGAGGCTGTTTAAGGATCATTATGATAGCCAGGTGATGCTA------AATTGTAATTAC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163433878 332 + 180432695 taaataatgtgtaCTAAAGATATTAAAGAGCGTTTTACAAAATAAGGCATTTTTGGTAAAAGCCATTGCTGTTTTCCAGTGATCAATATCTCTTTCTATGTGTTGCTGATCTTTCTAGCCTTTCTTTTGTCAGTTTAAATTTTTGTTCAATTCCCTAGAAGCTTTAACTGTTAACAGCTAACAGCTGCAGGAGG----------------GAGATGCCTGAATTAGGGCAGGTGTGTTTGGCACAGAGCTAAGCTGTGTCTCTGTCAGGGATACAAACTCCAGTCAAGATATGTTAGAGGCTGTTTAAGGATCATTATGATAGCCAGGTGATGCTA------AATTGTAATTAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110462737 332 + 127223203 TAAATAATGTGTACTAAAGATATTAAAGAGCATTTTACAAAATAAGGCAGTTTTGGTAAAAGCCATTGCTGTTTTCCAGTGATCAATATCTGTTTCTATGTGTTGCTGATCTTTCTAGCCTTTCTTTTGTCAGTTTAAATTTTTGTTCAATTCCCTAGAAGCTTTAACTGCTAACAGCTAACAGCTGCAGGAGG----------------GAGATGCCTGAATTAGGGCAGGTGTGTTTGGCACAGAGCTAAGCTGTGTCTCTGTCAGGGATACAAACTCCAGTCAAGATATGTTAGAGGCTGTTTAAGGATCATTATGATAGCCAGGTGATGCTA------AATTGTAATTAC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23806447 338 - 128169293 TAAATAATGTGTACTAAAGATATTAAAAAGCATTTTACAAAATAAGGCATTTTTGGCAAAAGCCATTGCCATTTTCCAGTGATCAATATCTGTTTCTATGTGTTGCTGATCTTTCTAGCCTTTCTTTTGTCAGTTTAAATTTTTGTCAAATTCCCTGGAAACTTTAACTGCTAACAGCTAACAGCTGCAGGAGG----------------GAGATGCCTGAATTAGGGCAGGTGTGTTTGGCACAGAGCTAAGCTGTGTCTCTATCAGGGATATAAACTCCAGTCAAGATACGTTAGAGGCTGTTTAAGGATCATTATGATAGCCAGGTGATGCTAAATTGTAATTGTAATTAC
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52132891 334 -  59632846 taaataaattatttttaaaaaaTTTAAAGA----TTACAAAATAAGGCATTTGGGGGCAAAGTAATTGCTCTTTTCAAATGATACATACCGGCTTCTATGTGTCACTCA---------GCTTTTTTTTGTCAGTTTAGAAATTTGTCCTATTCCCTAAAAGTTTTAACTGCTGATACCTGG-GGCGGGGGGAGGGGAGGGTGGAGGGTGTGAGATGCCTGAATTATAGCAGGTGTGTCTGGCGGAAATCTCAGGTGTCTCCCTGCTGGGGAGAGGGACTCCAGCCAAGAGAAGTTAGCAGCTGTTTAAGGATGATTATGATACCCTGGTGATGCTG------AGTTCTAGTTAA
i canFam3.chr16            I 212 C 0
e mm10.chr6                 40443463  39 + 149736546 I

a score=674645.000000
s hg38.chr7_GL383534v2_alt     80870 190 +    119183 CTGCTGTTAGCTATTGGGTGGGTGGGGAGGAGAAGGGA--GGAGAGGGTGATATTTATAAATGGCAGGT-GT--AAGGAGTGAAAATAATTTCTTTTCAAT-ATTAGCTTATTCCCAAATTGGCTAATGGGTATTTTTAAAGCCATGCTAAATTAAAGGAATTCAATTTTCTCACTAGTAT-----------TTGGTAACACAT-------GGG
s panTro4.chr7             143180835 190 + 161824586 CTGCTGTTAGCTATTGGGTGGGTGGGGAGGAGAAGGGA--GGAGAGGGTGATATTTATAAATGGCAGGT-GT--AAGGAGTGAAAATAATTTCTTTTCAAT-ATTAGCTTATTCCCAAATTGGCTAATGGGTATTTTTAAAGCCATGCTAAATTAAAGGAATTCAATTTTCTCACTAGTAT-----------TTGGTAACACAT-------GGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139001862 197 + 157549271 CTGCTGTTAGCTATTGGGTGGGTGGGGAGGAGAAGGGA--GGAGAGGGTGATATTTATAAATGGCAGGT-GT--AAGGAGTGAAAATAATTTCTTTTCAAT-ATGAGCTTATTCCCAAATTGGCTAATGGGTATTTTTAAAGCCATGCTAAATTAAAGGAATCCAATTTTCTCACTAGTAT-----------TTGGTAACACATGGGTTCAGGG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93124269 197 + 110113093 CTGCTGTTAGCTATTGGGTGGGTGGGGAGGAGAAGGGA--GGAGAGGGTGATATTTATAAATGGCAGGT-GT--AAGGAGTGAAAATAATTTCTTTTCAAT-ATGAGCTTATTCCCAAATTGGCTGATGGGTATTTTTAAAGCCATGCTAAATTAAAGGAATCCAATTTTCTCACTAGTAT-----------TTGGTAACACATGGGTTCAGGG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181017897 190 + 198365852 CTGCTGTTAGCCATTGGGTGGGTGGGGAGAAGAATGGA--GGGGAGGGTGATATTTATAAATGGCAGGT-GT--AAGGAGTGAAAATAATTTGTTTTCAAT-ATGAGCTTATTCCCAAATTGGCTAACGGGTATGTTTAAAGCCAGGCTAAATTAAAGGAATCCAATTTTCTCACTAGTAT-----------TTGGTAGCACAT-------GGG
i rheMac3.chr3             C 0 I 7
s macFas5.chr3             174766068 190 + 192294377 CTGCTGTTAGCCATTGGGTGGGTGGGGAGAAGAATGGA--GGGGAGGGTGATATTTATAAATGGCAGGT-GT--AAGGAGTGAAAATAATTTGTTTTCAAT-ATGAGCTTATTCCCAAATTGGCTAACGGGTATGTTTAAAGCCAGGCTAAATTAAAGGAATCCAATTTTCTCACTAGTAT-----------TTGGTAGCACAT-------GGG
i macFas5.chr3             C 0 I 7
s papAnu2.chr3             163434210 192 + 180432695 CTGCTGTTAGCCAttgggtgggtggggagaagaATGGAggggggggggTGATATTTATAAATGGCAGGT-GT--AAGGagtgaaaataatttgttttcaat-aTGAGCTTATTCCCAAATTGGCTAACGGGTATGTTTAAAGCCAGGCTAAATTAAAGGAATCCAATTTTCTCactagtat-----------ttggtagcacat-------gGG
i papAnu2.chr3             C 0 M 476
s chlSab2.chr21            110463069 185 + 127223203 CTGCTGTTAGCCATTGGGTGGGTGGGGAGGAGAATGGG------GGGGTGATATTTATAAATGGCAGGT-GT--AAGGAGTGAAAATAATTTGTTTTCAAT-ATGAGCTTATTCCCAAATTGGCTAACGGGTATGTTTAAAGCCATGCTAAATTAAAGGAATCCAATTTTCTC-CTAGTAT-----------TTGGTAGCACAT-------GGG
i chlSab2.chr21            C 0 I 7
s calJac3.chr8              23806785 191 - 128169293 CTGCTGGTAGCCATTGGGTGTGTGGGGAGGAGAAGGGA--GGAGAGGGTGATCTTTATAAATGGCAGGT-GT--AAAGAGTAAAAATACTTTCTTTTCAATAATGAACTCATTCCCAGATTGGCTAATGGGTATTTTTAAAGCCATGCTAAATTAAAGAAATCCAAATTTCTCACTACTAT-----------TTGGTAGCCCAT-------GGG
i calJac3.chr8             C 0 I 1
s mm10.chr6                 40443502 190 + 149736546 CTGCTGCTAGCTGAGAGGTAGGTGTGCC--ATGACGGA--GGACAGATTG-TGCCTAAGTACCGCAGAT-GTGAAAGGGTAGAAAATCATTTCCTGCTGATAATGAACTTGCTTCCCAATTGGCTAATGGACACTTTTCG--------TAAATGAAAGGAAGCCAACCATCTTATTAGTGTGTCACCAGCGATTGGCCAC---T-------GGG
i mm10.chr6                I 39 C 0
s canFam3.chr16             52133225 187 -  59632846 CCGCTGTTAGCCAC-GGGTGGGTGGGGGAGACA-------GGAGAGCGTGGTATTTCTTAATGGTAGGTAGA--AAAGACTGGAAAGAATATCTTCCCAATAATGAGCTTGTTTCCGAAATGGCTAATGGGTATTTTTAAAGCCACATAGAATTAAAGGAATCCAACTATCTCACCCGGATT----------TTTGCAGCACGT-------GGG
i canFam3.chr16            C 0 I 7

a score=1270405.000000
s hg38.chr7_GL383534v2_alt     81060 401 +    119183 AGACTATGTGTCATATCCAGAAGAGTTCTGTACATGAACTGCATTTAATTGCTCCGAGAGTCACTGGAGCTTTCTTTAATCAGAATGGAAATCAGGATAAGCTGAGGTCTTATAGATTGGTGGTACTTAAGGC----AGAAAATTAACACCGTGTTT---TGTAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACCTG-CAGGTTAAG-------TTATTTTCTCCTCCCTGCTTCTGTAGGTTCACAGCGTTCCCTTCTGATAGAGCTTTTTGTCTGTGTTGTAAAGCTCTTTGGCTGAGATGGATGACAAAGATATTGACAAAGAACTAAGGCAGAAATTAAACTTTTCCTATTGT---GAGGAGACTGAGATTGAAGGGCAGAAGAAAGTAGAAGAAAGCAGGG
s panTro4.chr7             143181025 401 + 161824586 AGACTATGTGTCATATCCAGAAGAGTTCTGTACATGAACTGCATTTAATTGCTCCGAGAGTCACTGGAGCTTTCTTTAATCAGAATGGAAATCAGGATAAGCTGAGGTCTTATAGATTGGTGGTACTTAAGGC----AGAAAATTAACACCGTGTCT---TGTAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACCTG-CAGGTTAAG-------TTATTTTCTCCTCCCTGCTTCTGTAGGTTCACAGTGTTCCCTTCTGATAGAGCTTTTTGTCTGTGTTGTAAAGCTCTTTGGCTGAGATGGATGACAAAGATATTGACAAAGAACTAAGGCAGAAATTAAACTTTTCCTATTGT---GAGGAGACTGAGATTGAAGGGCAGAAGAAAGTAGAAGAAAGCAGGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139002059 401 + 157549271 AGACTATGTGTCATATCCAGAAGAGTTCTGTACATGAACTGCATTTAATTGCTCCGAGAGTCACTGGAGCTTTCTTTAATCAGAATGGAAATCAGGATAAGCTGAGGTCTTATAGATTGGTGGTACTTAAGGC----AGAAAATTAACACCGTGTCT---TGTAGCTGTTAGTTGGTAGAGGGAGATTCAGGCTACCGTCGTGAAACCTG-CAGGTTAAG-------TTATTTTCTCCTCCCTGCTTTTGTAAGTTCACAGTGTTCCCTTCTGATAGAGCTTTTTGTCTGTGTTGTAAAGCTCTTTGGCTGAGATGGATGACAAAGATATTGACAAAGAACTAAGGCAGAAATTAAACTTTTCCTATTGT---GAGGAGACTGAGATTGAAGAGCAGAAGAAAGTAGAAAAAAGCAGGG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93124466 401 + 110113093 AGACTATGTGTCATATCCAGAAGAGTTCTGTACATGAACTGCATTTAATTGCTCCGAGAGTCACTGGAGCTTTCTTTAATCAGAATGGAAATCAGGATAAGCTGAGGTCTTATAGATTGGTGGTACTTAAGGC----AGAAAATTAACACCGTGTCT---TGTAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACCTG-CAGGTTAAG-------TTATTCTCTCCTCCCTGCTTCTGTAGATTCCCAGTGTTCCCTTCTGATACAGCTTTTTGTCTGTGTTGTAAAGCTCTTTGGCTGAGATGGATGACAAAGATATTGACAAAGAACTAAGGCAGAAATTAAACTTTTCCTATTGT---GAGGAGACTGAGATTGAAGGGCAGAAGAAAGCACAAGAAAGCAGGG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181018094 401 + 198365852 AGACTACGTGTCATATCCAGAAGAGTTCTGTACATGAACTGCACTTAATTGCTCCGAGAGTCACTGGAGCTTTCTTTAATCAGAATGGAAATCAGGATAAGCTGAGGTCTTATAGATTGGTAATACTTAAGGC----AGAACATTAACACCATGCCT---TGTAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCACAAAACCTG-CAGGTTAAA-------TTATTTTCTCCTCCCTGCTTCTGTAGGTTCACAGGGTTCCCTTCTGATAGAGTTTTTTGCCTGTGTTGTAAAGCTCTTTGGCTGAGATGGATGACAAAGATATTGACAAAGAACCAAGACAGAAATTAAACTTTTCCTATTGT---GAGGAGACTGAGATTGAAGGGCAGAAGAAAGCACAAGAAAGCAGGG
i rheMac3.chr3             I 7 C 0
s macFas5.chr3             174766265 401 + 192294377 AGACTACGTGTCATATCCAGAAGAGTTCTGTACATGAACTTCACTTAATTGCTCCGAGAGTCACTGGAGCTTTCTTTAATCAGAATGGAAATCAGGATAAGCTGAGGTCTTATAGATTGGTAATACTTAAGGC----AGAACATTAACACCATGCCT---TGTAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCACAAAACCTG-CAGGTTAAA-------TTATTTTCTCCTCCCTGCTTCTGTAGGTTCACAGGGTTCCCTTCTGATAGAGTTTTTTGCCTGTGTTGTAAAGCTCTTTGGCTGAGATGGATGACAAAGATATTGACAAAGAACCAAGACAGAAATTAAACTTTTCCTATTGT---GAGGAGACTGAGATTGAAGGGCAGAAGAAAGCACAAGAAAGCAGGG
i macFas5.chr3             I 7 C 0
s chlSab2.chr21            110463261 401 + 127223203 AGACTATGTGTCATATCCAGAGGAGTTCTGTACATGAACTGGACTTAATTGCTCCGAGAGTCACTGGAGCTTTCTTTAATCAGAATGGAAATCAGGATAAGCTGAGGTCTTATAGATTGGTAATACTTAAGGC----AGAACAGTAACACCGTGCCT---TGTAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCACGAAACCTG-CAGGTTAAA-------TTACTTTCTCCTCCCTGCTTCTGTAGGTTCCCAGGGTTCCCTTCTGATAGAGCTTTTTGCCTGTGTTGTAAAGCTCTTTGGCTGAGATGGATGACAAAGATATTGACAAAGCACCAAGACAGAAATTAAACTTTTCCTATTGT---GAGGAGACTGAGATTGAACGGCAGAAGAAAGCACAAGAAAGCAGGG
i chlSab2.chr21            I 7 C 0
s calJac3.chr8              23806977 401 - 128169293 TCACTGTGTGTCATATCCAGAAGAGTTCTATACATGAACTGGATTTAGTTGATCTGAGAGTCACTGGAGCTTTCTTTAATCAGAATGGAAATCAGGATAAGCTGAGGTCTTAAAGCTTTGTGGTACTTAAGGG----AGAAAATTAACACTGTGTCT---TGTAGCCGTTAGTTGGTAGAGGGAAATTCAGGCTACAGTCGCGAAACCTG-CAGGTTAAA-------GTATTTTGTCCTCCTAACTTGTGTAGGTTCACAGTGTTCCCTTCTGATAGAGCTTTTTGCCTGTGTTGTAAAGTTCTTTGGCTGAGATGGGTGACAAAGATACTAAC---GAACCAAGACAGAAATTAAACTTTTCCTATTGTGAGGAGGAGACTGAGACTGAAGGGCAGAAGAAAGCACAAGAAAGCAGGG
i calJac3.chr8             I 1 C 0
s mm10.chr6                 40443692 391 + 149736546 AGACTCTGTGGGACAT-CAGGAGAGTTCT-TAGAGGGCCTGGATATAATTGCTTGGAGAGTTGCTGGAGATTTCCCTAATCAGAATGGAAATAAGGATATGCTGAGGCCTTAGAAGT--GTGGTGCTTAAGGGGAAAAAAAAATCCACAGCCTGTCT---CACAGCTGTTGGTGGGTAGAGGGGAGGGCAAGCAGACGTTGTGCAA-----CAGGTTGGGTTTTTTTTTTTTTTCTTCTCCTTACCTCTGTAGATTTATAGTGTTTTCCACTCCGAGACCTCCTTGTCTGC----------------ACTGAGATGGCCGACACAGAGACTGACCAGGGACTGAACAAGAAATTAAGCTTCTCCTTTTGTGAAGAAGACACTGAGAGTGAAGGGCAGATGACTGCACAAGACATCGGAG
i mm10.chr6                C 0 C 0
s canFam3.chr16             52133419 403 -  59632846 AGACTATGTGGGATATCCAGAAGAGTTCTATACATGAATTGAATTTAATTGCTCCGAGAGTCGCTGGAGCTTTCTTCAATCAGGCTGGAAATGAGGATAAGCTGAGGTCTTACAGATATGGGGTACTTAAGGG----AGCAAACTAATGCCGTGCCTCTGCATAGCTATTAGTGGGCAGAGGGAGAGGCAGGCTAACACTGGGGGATTTGCCAGCTTACA-------GTGTCCTCTCCTCC-----TCTGGAGCTCTACAGGGCTCCCCTCCGATAGGCCTTCTCACTGGTGCTGTCAAGCTCTCTGGCTGAGATGGATGACAGCAGTATTAACAAAGAACTAAAGCAGAAGTTGAATGTTTCCTACTGTGAAGAAGAGAGCGAGAGTGAGGGGCAGAAGGAGGCACCAGAAAGCAGGG
i canFam3.chr16            I 7 C 0
e papAnu2.chr3             163434402 476 + 180432695 M

a score=192994.000000
s hg38.chr7_GL383534v2_alt     81461 48 +    119183 AGGCTTCGAGCCAAACCCCAGAGAAGGGTGAAGTGCAGGATTCAGAGG
s panTro4.chr7             143181426 48 + 161824586 AGGCTTCGAGCCAAACCCCAGAGAAGGGTGAAGTGCAGGATTCAGAGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139002460 48 + 157549271 AGGCTTTGAGCCAAACCCCAGAGAAGGGTGAAGTGCAGGATTCAGAGG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93124867 48 + 110113093 AAGCTTCAAGCCAAACCCCAGAGAAGGGTGAAGTGCAGGATTCAGAGG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181018495 48 + 198365852 AGGCTTTGAGCCAAACCCCAGAGAAGGGTGAAGTGCAGGATTCAGAGG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174766666 48 + 192294377 AGGCTTCGAGCCAAACCCCAGAGAAGGGTGAAGTGCAGGATTCAGAGG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163434884 48 + 180432695 aGGCTTCAAGCCAAAACCCAGAGAAGGGTGAGGTGCAGGATTCAGAGG
i papAnu2.chr3             M 476 C 0
s chlSab2.chr21            110463662 48 + 127223203 AGGCTTCGAGCCAAACCCCAGAGAAGGGTGAAGTGCAGGATTCAGAGG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23807378 48 - 128169293 AGGCTTCGAGCCAAACCCTAGAGAAAGGTGAAGTGCAGGATTCAGAGG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40444083 48 + 149736546 GGGCCCAGAGCCAAAAGCCTGGGAGGGAAGAAAGTGAGGAGTTGGAGG
i mm10.chr6                C 0 I 8
s canFam3.chr16             52133822 48 -  59632846 AGACCCAGAGTCAAACCCCAGACTGGGCTGAAGGCCAGGAGTCAGAGG
i canFam3.chr16            C 0 C 0

a score=85421.000000
s hg38.chr7_GL383534v2_alt     81509 23 +    119183 CAAAGGGTACACCACCTTGGACT
s panTro4.chr7             143181474 23 + 161824586 CAAAGGGTACACCACCTTGGACT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139002508 23 + 157549271 CAAAGGGTACACCACCTCGGACT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93124915 23 + 110113093 CAAAGGGTACACCACCTCGGACT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181018543 23 + 198365852 CAAAGGGTACACCACCTCGGACT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174766714 23 + 192294377 CAAAGGGTACACCACCTCGGACT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163434932 23 + 180432695 CAAAGGGTACACCACCTCGGACT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110463710 23 + 127223203 CAAAGGGTACACCACCTTGGACT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23807426 23 - 128169293 CAAAGCGTACACCACCTCGGACT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52133870 23 -  59632846 CAAAGTTCACACCTCCCAGGACT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40444131  8 + 149736546 I

a score=5186409.000000
s hg38.chr7_GL383534v2_alt     81532 1462 +    119183 CCCCTTAGCAACGTGCATGAGCTCGACACATCTTCGGAAAAAGACAAAGAAAGTCCAGATCAGATTTTGAGGACTCCAGTGTCACACCCTCTCAAATGT-CCTGAGACACCAGCCCAA-CCAGACAGCAGGAGCAAGCTGCTGCCCAGTGACAGCCCCTCTACTCCCAAAGTAAGTAAGGGGTGGGGGAAAAAGGGACGCAGGTCGCCAAGCTCTGCTTTCCTGTAGTTTAGCTGATAG----AGTGGA--------TT----------CATGTGTGT-ATGA--CAGTCACCTC-CAGGCTGTGTATATCCTCAATTACACATTTATTGATGAAAAT---GAAG---AAATTAAAATTACCAGAAAATGGACAGAATTAAATGGTTTGCCAGTTGTC-TTCTCAAAACCACTGGTGCCAGTAACTGTTGGCTATTGGCCACAAACAAATCTTGGGTAGAAAAAAGTCCCTagttaaagaatattggaactggaaggaatattgagatttagagctccagctgtgcagtttacatatgagaaaatgaagggcccaagacagaaactgtct-cacagctcagccaatgttacagacaggactagaaacctgatctttttggcctagtctattgttctttccattacgccaactggctcTATT-TTTGTGTGATTATTTACTAATACTTTCTAATATAAGAACGTCCACACTCACTGTTTGAACATAGTCATATCTCTTTGCTGCTGCTCCTCCCAGAAACAACTCCTCTCCCCTCCTTGGTCTAATAGAAGAACCTCCAGGTTCTTCTAGTATATGTCAGCAAAG-AGGAAACTTGTTGA---------------------------------------------------TACTTCTTCATAAG------------------------------------------------------------------------------CTGAGGA--------------------------------------------------------------------------TGGCAAATAAGCAAGAGTCCCTAGTAG----CATATTCCTTTATTCTTGTTGTGATTGGTGTCCTGTTGCATCGTTCATGTTATTAAAGCCATAGTTGGGGCAGGGTTGCCTCTAATCAACTCTGGTGCCATGGTGTGTGAGT-CCTAGGATTGGTATTAGCTCGGCTTCCTGCTGGTTCAGCCTGAGGCACTTAAGATCATCATAATAACATCTGTGATCCTGACTGCGA-CACAGTTGCTATCAGCAGGTCTCTTTAGTACCTGCTGGGTGTGGGTACCATGTATACCAGGAAATTCTAAGCTGCTTGTTTGAATTGTAGAAAAACTAAT-----ATGCTCCGATGTCTATCTCTGGGTTTTTCAGTGGTCACAGCACCAGCCAATTAATCACCCATTTAT------------------------------------------------------------TCTTTGAGAATTCCCTATAGGTaaggagcatataatacagtctctgccctcaaagagcttacagtctagcagagagagagtagttatgccaaaaggcaCTATGTGATAAGTGTGGTCAGAACCCGCTGGACAGATT--CTCAGTGTGGTGATCAGGAAAGAAAGAAAG--------GTATAGGAAGGGCAATGAAAGTTGGTCCAGTTTTGATATATGGGGGAGAATGGGCTGAGAGAATGTGGCTTTGAGTAAGAGT
s panTro4.chr7             143181497 1462 + 161824586 CCCCTTAGCAACATGCATGAGCTCGACACATCTTCGGAAAAAGACAAAGAAAGTCCAGATCAGATTTTGAGGACTCCAGTGTCACACCCTCTCAAATGT-CCTGAGACACCAGCCCAA-CCAGACAGCAGGAGCAAGCTGCTGCCCAGTGACAGCCCCTCTACTCCCAAAGTAAGTAAGGGGTGGGGGAAAAAGGGACGCAGGTCGCCAAGCTCTGCTTTCCTGTAGTTTAGTTGATAG----AGTGGA--------TT----------CATGTGTGT-ATGA--CAGTCACCTC-CAGGCTGTGTATATCCTCAATTACACATTTATTGATGAAAAT---GAAG---AAATTAAAATTACCAGAAAATGGACAGAATTAAATGGTTTGCCAGTTGTC-TTCTCAAAACCACTGGTGCCAGTAACTGTTGGCTATTGGCCACAAACAAATCTTGGGTAGAAAAAAGTCCCTagttaaagaatattggaactggaaggaatattgagatttagagctccagctgtgcagtttacatatgagaaaatgaagggcccaagacagaaactgtct-cacagctcagccaatgttacagacaggactagaaacctgatctttttgacctagtctattgttctttccattacgccaactggctcTATT-TTTGTGTGATTATTTACTAATACTTTCTAATATAAGAACCTCCACACTCACTGTTTGAACATAGTCATATCTCTTTGCTGCTGCTCCTCCCAGAAACAACTCCTCTCCCCTCCTTGGTCTAATAGAAGAACCTCCAGGTTCTTCTAGTATATGTCAGCAAAG-AGGAAACTTGTTGA---------------------------------------------------TACTTCTTCATAAG------------------------------------------------------------------------------CTGAGGA--------------------------------------------------------------------------TGGCAAATAAGCAAGAGTCCCTAGTAG----CATATTCCTTTATTCTTGTTGTGATTGGTGTCCTGTTGCATCGTTCATGTTATTAAAGCCATAGTTGGGGCAGGGCTGCCTCTAATCAACTCTGGTGCCATGGTGTGTGAGT-CCTAGGATTGGTATTAGCTCGGCTTCCTGCTGGTTCAGCTTGAGGCACTTAAGATCACCATAATAACATCTGTGATCCTGACTGCGA-CACAGTTGCTATCAGCAGGTCTCTTTAGTACCTGCTGGGTGTGGGTACCATGTATACCAGGAAATTCTAAGCTGCTTGTTTGAATTGTAGAAAAGCTAAT-----ATGCTCCGATGTCTATCTCTGGGTTTTTCAGTGGTCACAGCACCAGCCAATTAATCACCCATTTAT------------------------------------------------------------TCTTTGAGAATTCCCTATAGGTaaggagcatataatacagtctctgccctcaaagagcttacagtctagcagagagagagtagttatgccaaaaggcaCTATGTGATAAGTGTGGTCAGAACCCGCTGGACAGATT--CTCAGTGTGGTGATCAGGAAAGAAAGAAAG--------GTATAGGAAGGGCAATGAAAGTTGGTCCAGTTTTGATATATGGGGGAGAATGGGCTGAGAGAATGTGGCTTTGAGTAAGAGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139002531 1458 + 157549271 CCCCTTAGCAACGTGCATGAGCTCGACACATCTTCGGAAAAAGATAAAGAAAGTCCAGATCAGATTTTGAGGACTCCAGTGTCACACCCTCTCAAATGT-CCTGAGACACCAGCCCAA-CCAGACAGCAGGAGCAAGCTGCTGCCCAGTGACAGCCCCTCTACTCCCAAAGTAAGTAAGGGGTGGGGGGAAAAGGGACGCAGGTCGCCAAGCTCTGCTTTCCTGTAGTTTAGCTGATAG----AGTGGA--------TT----------CATTTGTGT-ATGA--CAGTCACCTC-CAGGCTGTGTATATCCTCAATTACACATTTATTGATGAAAAT---GAAG---AAATTAAAATTACCAGAAAATGGACAGAATTAAATGGTTTGCCAGTTGTC-TTCTCAAAACCACTGGTGCCAGTAACTGTTGGCTATTGGCCACAAACAAATCTTGGGTAGAAAAAAGTTCCTagttaaagaatattggaagtggaaggaatattgagatttagagccccagctgtgcagtttacatatgagaaaatgaagggcccaagacagaaactgtct-catagctcagccaatgttacagacaggactagaaatctgatc-ttttggcctagtcta---ttctttccattacgccaactggctcTATT-TTTGTGTGATTATTTACTAATACTTTCTAATATAAGAATGTCCACACTCACTGTTTGAACATAGTCATATCTCTTTGCTGCTGCTCCTCCCAGAAGCAACTCCTCTCCCCTCCTTGGTCTAATAGAAGAACCTGGAGGTTCTTCTATTATATGTCAGCAAAG-AGGAAACTTGTTGA---------------------------------------------------TACTTCTTCATAAG------------------------------------------------------------------------------CTGAGGA--------------------------------------------------------------------------TGGCAAATAAGCAAGAGTCCCTAGTAG----CATATTCTTTTATTCTTGTTGTGATTGGTGTCCTGTTGCATCATTCATGTTATTAAAGCCATAGTTGGGGCAGGGTTACCTCTAATCAACTCTGGTGCCATGGTGTGTGAGT-CCTAGGATTGGTATTAGCTCGGCTTCCTGCTGGTTCAGCTTGAGGCACTTAAGATCATCATCGTAACATCTGTGATCCTCACTGGGG-CACAGTTGCTGTCAGCGGGTCTCTTTAGTACCTGCTGGGTGTGGGTACCGTGTGTACCAGGAAATTCTAAGTTGCTTGTTTGAATTGTAGAAAAACTAAT-----ATGCTCTGATGTCTATCTCTAGGTTTTTCAATGGTCACAGCACCAGCCAATTAATCACCCATTTAT------------------------------------------------------------TCTTTGAGAATTCCCTGTAGGTaaggagcatataatacagtctctgccctcaaagagcttacagtctagcagagagagaGGAGTTATGCCAAAAGGCACTATGTGATAAGTGTGATCAGAACCCGCTGGACAGATT--CTCAGTGCGGTGATCAGGAAAGAAAGAAAG--------GTATAGGAAGGGCAATGAAAGTTGGTCCAGTTTTGATACATGGGGGAGAATGGGCTGAGAGAATGTGGCTTTGAGTAAGAGT
i ponAbe2.chr7             C 0 I 1077
s nomLeu3.chr13             93124938 1454 + 110113093 CCCCTTAGCAACGTGCATGAGCTCGACACATCTTTGGAAAAAGACAAAGAAAGTCCAGATCAGATTTTGAGGACTCCAGTGTCACACCCTCTCAAATGTCCCTGAGACACCAGCCCAACCCAGACAGCAAGAGCAAGCTGCTGCCCAGTGACAGCCCCTCTACTCCCAAAGTAAGTAAGGGGTGGGGGAAAAAGGGACACAGGTCGCCAAGCTCTGCTTTCCTGTAGTTTAGCTGATAG----AGTGGA--------TT----------CATGTGTGT-ATGA--CAGTCACCTC-CAGGTTGTGTATATCCTCAAATACACATTTATTGATGAAAAT---GAAG---AAATTAAAATTACCAGGAAATGGACAGAATTAAATGGTTTGTCAGTTGTC-TTCTCAAAACCACTGGTGCCAGTAACTATTGGCTATTGACCACAAACAAATCTTGGATAGAAAAAAGTTCCTagttaaagaatattggaactggaaggaatattgagatttagagccccagctgtgcagtttacatatgagaaaatgaaggacccaagacagaaactgtct-catagctcagccaatgttagagacaggactagaaacctgatctttttggcctagtctattgttctttccattacgccaACTGGCTCTATT-TTTGTGTGATTATTTACCAATACTTTCTAATATAAGAATATCCACACTCACTGTTTGAACACAGTCATATCTCTTTGCTGCTGCTCCTCCCAGAAGAAACTCCTCTCCCCTCCTTGGTCTAATGAAA-----TACAGGTTCTTCTATTATATGTCAGCAAAG-AGGAAACTTGTTGA---------------------------------------------------TACTTCTTCATAGG------------------------------------------------------------------------------CTGAGGA--------------------------------------------------------------------------TGGCAAATAAGCAAGAGTCCCTAGTAG----CATATTCCTTTATTCTCGTTGTGATTGGTGTCCTGTTGCATCGTTCATGTTATTAAAGCCATAGTTGGGGCAGGGTTACCTCTAATCAACTCTGGTGCCATGGTGTGTGAGT-CCTAGGATTGGTATTAGCTCGGCTTCCTGCTGGCTCAGCTTGAGGCACTTAAGATCATCATAATAACATCTGTGATCCTGACTGTGG-CACAGTTGCTTTCAGCAGGTCTCTTTAGTACCTGCTGGGTGTGGGTACCATGTATACCAGGAAATTCTAAGCTGCTTGTTTGAATTGTAGAAAAACTAAT-----ATGCTCCGATGTCTATGTCTGGGTTTTTCAATGGTCACAGCACCAACCAATTAATCACTCATTTAT------------------------------------------------------------TCTTTGAGAATTCCCTGTAGGTaaggagcatataatacagtctctgccctcaaaaagcttacagtctagcagacagagaggagttatgccaataggcaCTATGTGATAAGTGTGGTCACAACCCGCTGGACAGATT--CTCAGTGCAGTGATCAG----GAAAGAAAG--------GTATA-GAAGGGCAATGAAAGTTGGTCCAGTTTTGATATATGGGGGAGAATGGGCTGAGAGAATGTGGCTTTGAGTAAGAAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181018566 1438 + 198365852 CCCCTTAGCAACGTGCAGGAGCTCGACACATCTTGGGAAAAAGACAACGAAAGTCCAGATCAGATTTTGAGGACTCCAGTGTCACATCCTCTCAAATGT-CCTGAGACACCAGCCCAA-GAAGACAGCAGGAGCAAGCTGCTGCCGGGTGACAGCCCCTCTACTCCCAAAGTAAGTAAGGGGTGGGGG-AAAATGGACCCAGGTCGCCAAGCTCCGC-TTCCTGTAATTTAGCTGATAGTGACAGTGGA--------TT----------CATGTGTGT-ATGA--CAGTCACTTC-CAGGCTGTGGATGTCCTCAATTACATATTTATTGATGAAAAT-----AG---AGATTAAAATTATCAGAAAATGGACAGAATTAAATGGTTTGCCAGTTGTCTTTCTCAAAACCATTGGTGCCAGTAACTATTGCCTATTGGCCACAAACAAATTTTGGGTAGAAAAAAGTTCC----TAAagaatattggaactggaaggaatattgagatttagagtcccagctgtgcactttacatatgagaaaatgaagggcccaggacagaagctgtct-cacagctcagccaatgttagagataggactaaaaacctgatctttttggcctagtctg---ttctttccattacgccaactggctcTATT-TTTGTGTGATTATTTACTAATACTTTCTAATATAAGAATGTCCAGATTCACTGTTCGAACACATTC--ATCTCTCTGCTGCTGCTCCTCCCAGAAGAAACTCCTCTCCCCTCCTTGGTCTCGTGAAA-----TACAGG---TTCTATTATATGTCAGCAAAG-ACGAAACTTGTTGA---------------------------------------------------TACTTCTTTATAAG------------------------------------------------------------------------------CTGAGGA--------------------------------------------------------------------------TGGCAAATAAGCAACAGTCCCTGGTAG----CATATTCCTTTATTCTTGTTGTGATTGGTGTCTTGTTGCATCGTTCATGTTATTAAAGCCATAGTTGGGGCAGGGTTACCTCTAATCAACTCTGGTGCCATGATGTGTGAGT-GCTAGGATTGGTATTAGCTCTGCTTCCTGCTGGCTCAGCTTGAGGCACTTAAGATCATCATCATAACATCTGTGATCCTGACTGCGG-CACAGTTGCTGTCAGCAGGTCTCTTTAGTACCTGCTGGGTGTGGGTACCATGTATACCAGGAAATTCTAAGCTGCTTGTTTGAATTGTAGAAAAACTAAT-----ATGCTCTGATGTCTATCTCTGGGTTTTTCAATGGTCACAGCACCAACCAATTAATCACCCATTTAC------------------------------------------------------------TCTTTGAGAATTCCCTGTAGGTaaggagcatataatacagtctctgccctcaaagagcttacagtctagcaaagaga----agttatgccaatagacaCTATGTGATAAGTGTGGTCAGAACCCGCTGGACACATT--CTCAGTGCAGTGATCAG----AAAAGACAG--------GTATCAGAAGGGCAACGAAAGTTGGTCCAGTTTTGATATATGGGGGAGAATGGGCTGAGAGAATGTGGCTTTGAGTAAGCGT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174766737 1438 + 192294377 CCCCTTAGCAACGTGCAGGAGCTCGACACATCTTGGGAAAAAGACAACGAAAGTCCAGATCAGATTTTGAGGACTCCAGTGTCACATCCTCTCAAATGT-CCTGAGACACCAGCCCAA-GAAGACAGCAGGAGCAAGCTGCTGCCGGGTGACAGCCCCTCTACTCCCAAAGTAAGTAAGGGGTGGGGG-AAAATGGACCCAGGTCGCCAAGCTCCGC-TTCCTGTAATTTAGCTGATAGTGACAGTGGA--------TT----------CATGTGTGT-ATGA--CAGTCACTTC-CAGGCTGTGGATGTCCTCAATTACATATTTATTGATGAAAAT-----AG---AGATTAAAATTATCAGAAAATGGACAGAATTAAATGGTTTGCCAGTTGTCTTTCTCAAAACCATTGGTGCCAGTAACTATTGGCTATTGGCCACAAACAAATTTTGGGTAGAAAAAAGTTCC----TAAagaatattggaactggaaggaatattgagatttagagccccagctgtgcactttacatatgagaaaatgaagggcccaggacagaagctgtct-cacagctcagccaatgttagagacaggactagaaacctgatctttttggcctagtctg---ttctttccattacgccaactggctcTATT-TTTGTGTGATTATTTACTAATACTTTCTAATATAAGAATGTCCAGATTCACTGTTCGAACACATTC--ATCTCTCTGCTGCTGCTCCTCCCAGAAGAAACTCCTCTCCCCTCCTTGGTCTCGTGAAA-----TACAGG---TTCTATTATATGTCAGCAAAG-ACGAAACTTGTTGA---------------------------------------------------TACTTCTTTATAAG------------------------------------------------------------------------------CTGAGGA--------------------------------------------------------------------------TGGCAAATAAGCAACAGTCCCTGGTAG----CATATTCCTTTATTCTTGTTGTGATTGGTGTCTTGTTGCATCGTTCATGTTATTAAAGCCATAGTTGGGGCAGGGTTACCTCTAATCAACTCTGGTGCCATGATGTGTGAGT-GCTAGGATTGGTATTAGCTCTGCTTCCTGCTGGCTCAGCTTGAGGCACTTAAGATCATCATCATAACATCTGTGATCCTGACTGCGG-CACAGTTGCTGTCAGCAGGTCTCTTTAGTACCTGCTGGGTGTGGGTACCATGTATACCAGGAAATTCTAAGCTGCTTGTTTGAATTGTAGAAAAACTAAT-----ATGCTCTGATGTCTATCTCTGGGTTTTTCAATGGTCACAGCACCAACCAATTAATCACCCATTTAC------------------------------------------------------------TCTTTGAGAATTCCCTGTAGGTaaggagcatataatacagtctctgccctcaaagagcttacagtctagcaaagaga----agttatgccaatagacaCTATGTGATAAGTGTGGTCAGAACCCGCTGGACACATT--CTCAGTGCAGTGATCAG----AAAAGACAG--------GTATCAGAAGGGCAACGAAAGTTGGTCCAGTTTTGATATATGGGGGAGAATGGGCTGAGAGAATGTGGCTTTGAGTAAGAGT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163434955 1443 + 180432695 CCCCTTAGCAACGTGCAGGAGCTCGACACATCTtgggaaaaagacaaagaaagtccAGATCAGATTTTGAGGACTCCAGTGTCACATCCTCTCAAACGT-CCTGAGACACCAGCCCAA-GAAGACAGCAGGAGCAAGCTGCTGCCGGGTGACAGCCCCTCTACTCCCAAAGTAAGTAAGGGGTGGGGG-AAAACGGACCCAGGTCGCCAAGCTCCGC-TTCCTGTAATTTAGCTGATAGTGACAGTGGA--------TT----------CATGTGTGT-ATGA--CAGTCACTTC-CAGGCTGTGGATGTCCTCAATTACATATTTGTTgatgaaaataaagaag---agattAAAATTACCAGAAAATGGACAGAATTAAATGGTTTGCCAGCTGTC-TTCTCAAAACCATTGGTGCCAGTAACTATTGGCTATTGGCCACAAACAAATTTTGGGTAGAAAAACGTTCC----TAAAAAATATTGGACCTGGAAGGAATATTGAGATTTAGAGCCCCAGCTGTGCactttacatatgagaaaatgaaGGGCCCAGGACAGAAGCTGTCTCCATAGCTCAGCCAATGTTAGAGACAGCACTAGAAACCTGATCTTTTTGGCCTAGTCTG---TTCTTTCCATTACGCCAACTGGCTCTATT-TTTGTGTGATTATTTACTAATACTTTCTAATATAAGAATGTCCAGATTCACTGTTCGAACACATTC--ATCTctctgctgctgctcctcccaGAAGAAACTCCTCTCCCCTCCTTGGTCTCGTGAAA-----TACAGG---TTCTATTATATGTCAGCAAAG-ACGAAACTTGTTGA---------------------------------------------------TACTTCTTTATAAG------------------------------------------------------------------------------CTgagga--------------------------------------------------------------------------tggcaaataagcaaCAGTCCCTGGTAG----CATATTCCTTTATTCTTGTTGTGATTGGTGTCCTGTTGCATCGTTCATGTTCTTAAAGCCATAGTTGGGGCAGGGTTACCTCTAATCAACTCTGGTGCCATGATGTGTGAGT-GCTAGGATTGGTATTAGCTCTGCTTCCTGCTGGCTCAGCTTGAGGCACTTAAGATCATCATCATAACATCTGTGATCCTGACTGCGG-CACAGTTGCTGTCAGCGGGTCTCTTTAGTACCTGCTGGGTGTGGGTACCATGTATACCAGGAAATTCTAAGCTGCTTGTTTGAATTGTAGAAAAACTAAT-----ATGCTCTGATGTCTATCTCTGGGTTTTTCAATGGTCACAGCACCAACCAATTAATCACCCATTTAC------------------------------------------------------------TCTTTGAGAATTCCCTGTAGGTAAAGAGCATATAATACAgtctctgccctcaaagagcttacagTCTAGCAAAGAGA----AGTTATGCCAATAGACACTATGTGATAAGTGTGGTCAGAACCCGCTGGACACATT--CTCAGTGCAATGATCAG----AAAAGACAG--------GTATTGGAAGGGCAACGAAAGTTGGTCCAGTTTTGATATATGGGGGAGAATGGGCTGAGAGAATGTGGCTTTGAGTAAGAGT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110463733 1440 + 127223203 CCCCTTAGCAACGTGCAGGAGCTCGACACATCTTGGGAAAAAGACAACGAAAGTCCAGATCAGATTTTGAGGACTCCAGTGTCACATCCTCTCAAATGT-CCTGAGACACCAGCCCAA-GAAGACAGCAGGAGCAAGCTGCTGCCGAGTGACAGCCCCTCTACTCCCAAAGTAAGTAAAGGGTGGGGG-AAAACGGACCCAGGTCGCCAAGCTCCGC-TTCCTGTAATTTAGCTGATAGTGACAGTGGA--------TT----------CATGTGTGT-ATGA--CAGTCACTTC-CAGGCTGTGGATGTCCTCAATTACATATTTATTGATGAAAATAAAGAAG---AGATTAAAATTACCAGAAAATGGACAGAATTAAATGGTTTGCCAGCTGTC-TTCTCAAAACCATTGGTGCCAGTAACTATTCGCTATTGGCCACAAACAAATTTTGGGTAGAAAAACGTTCC----TAAagaatattggaactggaaggaatattgagatttagagccccagctgtgcactttatatatgagaaaatgaagggcccaggacagaagctgtct-cacagctcagccaatgttagagacaggactagaaacctgatctttttggcctagtctg---ttctttccattacgccaactggctcTATT-TTTGTGTGATTATTTACTAATACTTTCTAATATAAGAATGTCCAGATTCACTGTTCGAACACATTC--ATCTCTCTGCTGCTGCTCCTTCCAGAAGAAACTCCTCTCCCCTCCTTGGTCTCGTGAAA-----TACAGG---TTCTATTATATGTCAGCAAAG-ACGAAACTTGTTGA---------------------------------------------------TACTTCTTTATAAG------------------------------------------------------------------------------CTGAGGA--------------------------------------------------------------------------TGGCAAATAAGCAACAGTCCCTGGTAG----CATATTCCTTTATTCTTGTTGCGATTGGTGTCCTGTTGCATCGTTCATGTTATTAAAGCCATAGTTGGGGCAGGGTTACCTCTAATCAACTCTGGTGCCATGAGGTGTGAGT-GCTAGGATTGGTATTAGCTCTGCTTCCTGCTGGCTCAGCTTGAGGCACTTAAGATCATCATCATAACATCTGTGATCCTGACTGCGG-CACAGTTGCTGTCAGCGGGTCTCTTTAGTACCTGCTGGGTGCGGGTACCATGTATACCAGGAAATTCTAAGCTGCTTGTTTGAATTGTAGAAAAACTATT-----ATGCTCCGA--TCTATCTCTGGGTTTTTCAATGGTCACAGCACCAACCAATTAATCACCCATTTAT------------------------------------------------------------TCTTTGAGAATTCCCTGTAGGTaaagagcatataatacagtctctgccctcaaagagcttacagtctagcaaagaga----agttatgccaatagacaCTATGTGATAAGGGTGGTCAGAACCCGCTGGACACATT--CTCAGTGCAGTGATCAG----AAAAGACAG--------GTATCGGAAGGGCAATGAAAGTTGGTCCAGTTTTGATATATGGGGGAGAATGGGCTGAGAGAATGTGGCTTTGAGTAAGAGT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23807449 1461 - 128169293 CCCCTTAGTAATGTGCATGAGCTCGACACATCGTGGGAAAAAGACAAAGAAAGTCCAGATCAGATTCTTAGGACTCCAGTGTCACACCCTCTCACATGT-CCTGAGACACCAGCCCAA-CCAGACAGCAGGAGCAAGCTGCTACCCAGTGACAGCCCCTCTACTCCCAAAGTAAGTAAGGGGTGGGGA-ACAAGGGACCCAGGTCGCCAAGCTCTGCTCCCCTGTAGTTTAGCTGATAGAGAAAGTAGA--------CT----------C--GTGTAT-ATGA--CAGTCACCTC-TAGACTGTGTATATCCTCAATTGCATATTTATTGATGAAAATGAAAAAG---AGATTAAAGTTACCAGAAAATGGACAGAATTAAATGTTTTGCCAGTTGTC-TTCTCAAAACCATTGGTGCCAGTAACTATTTGCTATTGGCCACAAACAAATCTTAGGTAGAAAAAACTTACTAGTAAAagaatattggaactgggaggaatattgagatttagagctccacctgtgcactttacatctgagcaaatgaagggcccaagataggaactatct-catagctcagccaatgttagagacaggactagaaacctgatcgttttggcttagtctattgtcttttccattatgccaactggctcTATTCTTTGTGTGATTATTTACTAATACTCTCTAATATAAGAATGTCCACACTCACTGTTTGAACACATTCATATCTCTTTGCTGCTGCTCCTCCCAGAAGAAACTCCTCTCCCCTCCTTGGTCTAATGAAA-----TACAAATTCTTCTATTATATGTCAGCAAAGAAGGAAACGTGTTGA---------------------------------------------------TACTTCTTTATAAG------------------------------------------------------------------------------CTGAGGA--------------------------------------------------------------------------TGGCAAATGAGCAAGAGTCCCTAATAG----CATATTCCTTTGTTCTTGTTGTGATGGGTGTCCTGTTGCATTGTTCATGTTATTAAAGCCACCGTTGGGACAGGGTTGCCTCTAATCAACTCCAGTGCCATGGTGTGTGATT-CCTAGGCTTGGTATTAGCTTTGCTTCCTGCTGGCTCAGCTTGAGGCACTTAAGGTCATCATAATAATATCTGTGATTCTGACTGCGG-CACAGTAGTTGTCAGTGGGTCTCTTTAGTACCTGCTGGGGGTGGGTACCAGGTATACCAGGACATTCTAAGCAGCTTG--TGAATTGTAGACAAATTAAT-----ATGCTCCGATGTCTAGCTCTAGGTTTTTCAGTGGTCACAACACCAACCAAATAATCATCCATTTAT------------------------------------------------------------TTTTTGAGAATGTCCTGTAGGTAAGGAGCACATAatacagtctctgccgtcaaagagcttacagtctagcagtgagagaggagttatgtcagtagacattatgtgataagtGTGGTCAGAACCCTCTGGACAGATA--CACAGTGCAGTGATTAGGAAAGAAAGAAAG--------GTACAGGACGGGCAATGAAAGTTGGTCCCGTTTTGATATATGGGGGAGAATGGGCTGAGAGAATGTGGCTTTGAGTAAGAGT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40444139 1640 + 149736546 CCTCCTACCAGAG---ATGAACTTCATACTTCTCTGAGCAGAGACAAGGAAAGTCCAGGTCCTGATCTTTGGAAATCAGTTTCAGGCCCTCCCAAATGC-CCAGAGACACCAGT---A-TTACACAGCAAGAGCAAGCTGCCAGTCCCTACCAACTTCTCCACTCCCAAAGTGAGTAAGCCCTGGAG--AGGAGGGAC-CAGGT-------CTCTGTTCTCCTAAGGGTCAGCTGATGGGAGAAGAGGG--------TTTTGTCATTTACATATATGCAATGA--ACTTGCCTTA-CAGGCTAGATATATCTTCAATTCCCTATTTGTTAGTGGAAAT---GAAGGCTAGTTTAAAGTCACGATGAA----ACAGAATGAAGTGTCTACCTGCTTGTT-TCCCTCA----------GCCAGTAACTATTTGGTATTGGCGGCACATATATCTTAGTTGAAAAGATCT-------TAAAGTATATTGGAACTTCAAGAAATGCAGAGGTCCAGACATC---CTGTGTACTTTGCTTATAAGAAAACCAATT-CCCATGA--------GTCT-GAC--CTCAGCCACTGTTAGGGAAAAGACCAGATAACTTATCATTTTTATTCGGTCTACTTTCCTTTCCATTATGCTAGGTGGCTGTGTT-TCTGGGTAATTGTTTACTAATATTTTCTAATAGAGGAATGTTCATGATCACCATCAGCACACACTCATATCT-GCTGTTGCTGTTCTCCCCAGCACAGAGTCCCCTCTGCT-TTTGGCCAAGTGCAG-----TACTGGCACCTCTTATATACTTAAACAAAG--CAGCACTTCTTGAAGAATTTAAAGTGgggactggagagatggctcagtggttaagagcactgactgctcttccagaagtcctgagttcaaatcccagcaaccacatggtggctcacaaccatctgtaataagatctgatgccctcttctggtgtgtctgaagacagctacagtgtacttaTaataaataaataaataaataaataaataaatCTTTTAAAAAAAGAATTTAAAGTGTCAGCAATTAAGCACTGGTTGCTTATAGTTCACATATTACTTTACTTATGCTGC------------ACTGCATTGCTCAGTTTATTGAGGCCAAGGCTTGGGGATGGCTCCATGTAGCAGATTCTGATGCCATGGTGTATGGTTCCCTAGGGTGAATAGTAGCTCGACTCTCTGCCAGCTCAGCTTGAGGTGCTTAAGATCATTA---TAATACGTGTGATCCTGCCTGCAG--ACAGTCTCTGTCAGCAGGGCTCTGGAGTGCCTGCTGAGGGCCACTG-TATGTCTGACGGGGAATACTAGGCTTCTTGTCTGAACTATAGA----TGAAG-----AGGTTTTGGTGTCCGTCAGAAGGTATTTCAGTGTTC-TAACACCAACCAAATGATTAACCccttctccttcctcctccttttcctcctcttctttctcttctttctcttcctcctcctcctcctcctcctTAAGAATCCACTGTGGGTTATTAACACAGGTCACAATCTCCGTTTCCAATCAGTTTACAGTTTCTCAGG--------AGATGGGCAGGGTGGTACT---------------TGAAAGTCCTCTGTGCAGACTGACTCAGTGGGATGACGAGGAAAGATGGAAAGGCGAGGGAGCACGTGAACAGCAATGAGAGTTGGCGTAATGTTGATAGATGATGGAGAATG--------------GGCTTTGAGTGGAAGT
i mm10.chr6                I 8 C 0
s canFam3.chr16             52133893 1401 -  59632846 CCCTCCAGTAGCATCCATGGAGTGGGCACATTTGAGGAAAAAGACAAGATGAGTCCAGATCAGGCTTTGAGGACTCCAGGGCCAGGCTTTCACAAATGT-CCTGGGACACCAGCCCAG-CCAGACAGCAGGAGCGAGGTGGTGCATTGCGAGAGCCCCTACACTCCCAAAGTAAGTAAGTCGTGGGG--CAAGGGGACCCAGGTTGCCAAGATCTGGGTTC---TAGTTCAGCTGATGGAGAAGCAGGACACGGTCGTT----------TATGTGTAT-CTGACCCATTTGCCTCATGGGCTATGCATGTCCTTAATTATGTATTTGTTGGTGAAAATGAAGAAA---AGTTTTAAGTTATCAGAAAGT----AGAACTACGTGCCTTGCTAGCTGTC-TTCTCAAAATTGTTGATGTCAGCAACTGTTTGGTGTAGGCCACAAATAAATCTTGGTGGGGGAAAaat-cctagttaaagaatattgcaactggaaggatgattgagatctggagccct-gttatgcattctgcatgtgagaaaatcgaggttcaaagagatacactggct-tttggctcagccaatggcagaggcaggactagaaacctgatcttttggtctcagtctgctgttctctccattacgccaACTGGCTCTACT-CTTACGTAATTATCTACTAATATTTCCTAATATAAGAATGTTCACCTTCACTGTTTGAACATATTCACATACCTTTGCCACTGCTCTTCTCAGAAGGAAGTCCTCCCCATTCCTCAGTCTGATGAGG-----GATAGGCTCTTCCGTTATAGGTGATCAAAA-AGTTAACTTGGTGA---------------------------------------------------TACTTCTTTATAAG------------------------------------------------------------------------------CTGAGGA--------------------------------------------------------------------------TGACAAATAGGCTAAGGTCCCAAGTAGTTAGCTTAGTCCTTTATTCTTGCCGTGATTATTCTTATATTGTATC-TACACATTATTAAGGCCATGGA-AGGCCATCGTTACCTCTGACAACCTC--ATGCCATGGTATGTGAGC-TCCAGGACTGGCATTAGCTCTGCTTTTTGCTGGCTCAGCTTGAGGTACTCATG----CCGTCATAACATCTGTGCTTCTGATTGCAGACACAGTCACTGTCAGCAGGCCGCTTTAGTTCCTGCTGAGCATGCACACCACATCCACTAGGAAGTACTAAGCTTCTTGTCTGTATTGTAGACAAACTACTTTACAATGCCTGTGTGTCCATCCGTGGATTTTCCAATCGTCCCAACACCAACCAATCAATCATCCATTTAT------------------------------------------------------------TTTTtgagaacccaatgtgggcaaggaacacaagacatggtctctgccctcaaagtgcttataatc-agcagaaagacagGGGATGTATCTATAGACACTATGTGATAGGTGTTTCGAGAAT----------GGTT--TT---------------------------G--------GTGTATGTAGATTAGTGA---------------------------GAGAGTGGGCTGAAAGAGTGTGTCTCTGAGCAAGGGT
i canFam3.chr16            C 0 C 0

a score=2207923.000000
s hg38.chr7_GL383534v2_alt     82994 640 +    119183 ACACAGAGAAGAAA------------------ACATGAca------------ttcatttgatcattcacagcttaactgaacaccttgatgtgttagcagaccctctgctggcaaaacccattcactgccttcaaaaagagcccacaaaatgaataaagattaaacaaatgaaacaataaa-gttcaaaac--gtgtactagaggaatggttgagcatgatgagaaggaattaggaattacatctc----tatcagggaagactttccaaagaaagtaatgtttgagagatgtcttaaaggat-atttggagttagccaggcaaagaggggaataggaattctaggcaaaggga-aaagcatccaccaagttatggaggggaaggagc-tgctacacttggaaaacagcatgttattcagtgtgac--gggcctgtgtgtgagagagtgcaagagatgaggccagtgtaggtgggcagaagctagatcAAGATTTTAATCCTGAGAGTGTTG-AGAGAGCCATTACCATGGTTTTGAGTAGAGGGA----TTTTTTTGGAAAAATCATGACCTTTGTATGTATTGTGGGATGGAGCATGAGAGA-GCCTGGAGGTAGAGCAGTATTCAGAATAGCCCTGTT--G--AACAAAGAAGAGCCTGGACTAG----------GACAGTGAAAA--------ATTCAGAGATG-----------------AC
s panTro4.chr7             143182959 644 + 161824586 ACACAGAGAAGAAA------------------ACATGACA------------TTCATTTGATCATTCACAGCTTAACTGAACACCTTGATGTGTTAGCAGACCCTCTGCTGGCAAAACCCATTCACTGCCTTCAAAAAGAGCCCACAAAATGAATAAAGATTAAACAAATGAAACAGTAAA-GTTCAAAACATGTGTACTAGAGGAATGGTTGAGCATGATGAGAAGGAATTAGGAATTAAATCTC----TAtcagggaagactttccaaagaaagtaatgtttgagagatgtcttaaaggat-atttggagttagccaggcaaagaggggaataggaattctaggcaaaggga-aaagcatccaccaagttatggaggggaaggagc-tgctacacttggaaaacagcatgttattcagtgtgacaggggcctgtgtgtgagagggtgcaagagatgaggccagtgtaggtgggcagaagctagatcaagattttaatcctgagagtgttg-agagagccattaccatggttttgagtagaggGA----TTTTTTTGGAAAAATCATGACCTTTGTATGTATTGTGGGATGGAGCATGAGAGA-GCCTGGAGGTAGAGCAGTATTCAGAATAGCCCTGTT--G--AACAAAGAAAAGCCTGGACTAG----------GACAGTGAAAA--------ATTAAGAGATG-----------------AC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139005066 645 + 157549271 aCACAGAGAAGAAA------------------ACATGACA------------TTCATTTGATCATTCACAGCTTAACTGAACACCTTGATGTGTTAGCAGACCCTCTGCTGGCaaaacccattcactgccttcagaaagagcccacaaaatgaataaagattaaacaaatgaaacaataaa-gttcaaaacatgtgtactagaggaatggttgagcacgatgagaaggaattaggaattaaatctc----tatcagggaagactttccaaagaaagtaatgtttgagagatgtcttaaaggat-atttggagttagccaggcaaagaggggaataggaattctaggcaaaggga-aaagcatccaccaagttatggaggggaaggagc-tgctacggttggaaaacagtgtgttattcagtgtgacaggggcctgtgtgtgagagagtgcaagagatgaggccagtgtaggtgggcagaagctagatcaagattttaatcctgagagtgttgaagagagccattaccacggttttgagtagaggaa----tTTTTTTGGAAAAATCATGACCTTTGTATGTATGATGGGATGGAGCATGAGAGA-GCCTGGAGGTAGAGCAGTATTCAGAATAGCCCTGTT--G--AACAGAGAAGAGCCTGGACTAG----------GACAGTGAAAA--------GTTAAGAGATG-----------------AC
i ponAbe2.chr7             I 1077 C 0
s nomLeu3.chr13             93126392 639 + 110113093 ACACGGGGAAGAAA------------------ACAAGACA------------TTCATTTGATCATTCACAGCTTAACTGAACACCTTGATGTGTTAGCAGACCCTCTGCTGGCAAAACCCATTCACTGCCTTCAAAAAGAGCCCACAAAATGAATAAAG---------ATGAAACAATAAA-GTTCAAACCATGTGTACTAGAGGAATGGTTGAGCATGATGAGAAGGAATTAGGAATTAAATCTC----TAtcagggaagactttccaaagaaagtaatgtttgagagatgtcttaaaggat-atttggagttagccaggcaaagaggggaataggaattctaggcaaaggga-aaagcatccaccaagttatggaggggaaggagc-tgctacacttggaaaacagcgtgttattcagtgtgagaggggcctgtgtatgagagagtgcaagagatgaggccagtgtaggtgggcagaagctagatcaggattttaatcctgagagtgttg-agagagccattaccatggttttgagtagaggGA----TTTTTTTAGAAAAATCATGACCTTTGTACATATGATGGGATGGAGCATGAGAGA-GCCTGGAGGTAGAGCAGTATTTAGAATAGCGCTGTT--G--AACAGAGAAGAGCCTGGACTAG------GAGAGACAGTAAAAA--------ATTAAGAGATG-----------------AC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181020004 646 + 198365852 GCACAGGGAAGAAA------------------ACATGACA------------TTCATTTGATCATTCACAGCTTAACTGAACACCTTGATATGTTAGCAGACCCTCTGCTGGCAAAACCCATTCACTGCCTTCAAAAAGAGCCCACAAAATGAATAAAGATTAAATAAATGAAACAATAAA-GTTCAAACCATGTGTACTAGAGGAATGGTTGAGCATGATGAGAAGGAATTAGGAATTAAATCTC----TCtcagggaagactttccaaagaaagtaatgtttgaacgatgtcttaaaggat-att--tagttagccaggcaaagaggggaataggaattctaggcaaagggg-aaagcatctatcaagttacagagggtaaggagc-tactacacttggaaaacagcgtgttattcagtgttacaggagcctgtgtgtgagagagcacaagagatgaggccagtgtaggtgggcagaagttagatcAAGATTTTAATCCTGAGAGTGTTG-AGAGAGCCATTACCATGGTTTTGAGTAGGGGGA----TTGTTTTGGAAAAATCATGACCTTTGTATGTATGATGGGATGGAGCATGAGAGA-GCCTGGAGGTACAGCAGTATTCAGAATAGACCTGTT--G--AACAGAGAAGAGCCTGGACTGG------GACAGACAGTGAAAA--------ATTAAGAGATG-----------------AC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174768175 646 + 192294377 ACACAGGGAAGAAA------------------ACATGACA------------TTCATTTGATCATTCACAGCTTAACTGAACACCTTGATATGTTAGCAGACCCTCTGCTGGCAAAACCCATTCACTGCCTTCAAAAAGAGCCCACAaaatgaataaagattaaataaatgaaacaataaa-GTTCAAACCATGTGTACTAGAGGAATGGTTGAGCATGATGAGAAGGAATTAGGAATTAAATCTC----TCtcagggaagactttccaaagaaagtaatgtttgaacgatgtcttaaaggat-att--tagttagccaggcaaagaggggaataggaattctaggcaaagggg-aaagcatctatcaagttacagagggtaaggagc-tactacacttggaaaacagcgtgttattcagtgttacaggagcctgtgtgtgagagagcacaagagatgaggccagtgtaggtgcgcagaagttagatcAAGATTTTAATCCTGAGAGTGTTG-AGAGAGCCATTACCATGGTTTTGAGTAGGGGGA----TTGTTTTGGAAAAATCATGACCTTTGTATGTATGATGGGATGGAGCATGAGAGA-GCCTGGAGGTACAGCAGTATTCAGAATAGACCTGTT--G--AACAGAGAAGAGCCTGGACTGG------GACAGACAGTGAAAA--------ATTAAGAGATG-----------------AC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163436398 646 + 180432695 ACACAGGGAAGAAA------------------ACATGACA------------TTCATTTGATCATTCACAGCTTAACTGAACACCTTGATATGTTAGCAGACCCTCTGCTGGCAAAACCCATTCACTGCCTTCAAAAAGAGCCCACAAAAtgaataaagattaaataaattaaacaataaa-gtTCAAACCATGTGTACTAGAGGAATGGTTGAGCATGATGAGAAGGAATTAGGAATTAAATCTC----TCTCAGGGAAGACTTTCCAAAGAAAGTAATGTTTGAACGATGTCTTAAAGGAT-ATT--TAGTTAGCCAGGCAAAGAGGGGAATAGGAATTCTAGGCAAAGGGG-AAAGCATCTATCAAGTTACGGAGGGTAAGGAGC-TACTACACTTGGAAAACAGCGTGTTATTCAGTGTTACAGGAGCCTGTGTGTGAGAGAGCGCAAGAGATGAGGCCAGTGTAGGTGGGCAGAAGTTGGATCAAGATTTTAATCCTGAGAGTGCTG-AGAGAGCCATTACCATGGTTTTGAGTAGGGGGA----TTGTTTTGGAAAAATCATGACCTTTGTATGTATTATGGGATGGAGCATGAGAGA-GCCTGGAGGTAGAGCAGTATTCAGAATAGACCTATT--G--AACAGAGAAGAGCCTGGACTGG------GACAGACAGTGAAAA--------ATTAAGAGATG-----------------AC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110465173 648 + 127223203 ACACAGGGAAGAAA------------------ACATGACA------------TTCATTTGATCATTCACAGCTTAACTGAACACCTTGATGTGTTAGCAGACCCTCTGCTGGCAAAACCCATTCACTGCCTTCAAAAAGAGCCCACAaaatgaataaagattaaataaatgaaacaataaa-GTTCAAACCATGTGTACTAGAGGAATGGTTGAGCATGATGAGAAGGAATTAGGAATTAAATCTC----TAtcagggaagactttccaaagaaagtaatgtttgaacgatgtcttaaaggat-attaggagttagccaggcaaagaggggaataagaattctaggcaaaggag-aaagcatccaccaagttatggagggtaaggggc-tactacacttggaaaacagcatgttattcaatgttacaggagcctgtgtgtgagagagcgcaagagatgaggccagtgtaggtgggcagaagttagatcAAGATTTTAATCCTGAGAGTGTTG-AGAGAGCCATTACCATGGTTTTGAGTAGGGGGA----TTTTTTAGGAAAAATCATGACCTTTGTACGTATGATGGGATGGAGCATGAGAGA-GCCTGGAGGTACAGCAGTATTCAGAATAGACCTGTT--G--AACAGAGAAGAGCCTGGACTGG------GACAGACAGTGAAAA--------ATTAAGAGATG-----------------AC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23808910 650 - 128169293 ACTCAGGGAAGAGA------------------ACATGACA------------TTCATTTGATCATTCATAGCTTACCTGAACAGCGGGATGTGTTAGCAGACCCTCTGAGGGCAACACACATTTACTGCCTTCAAAAAGAGCCCACAAAATGAATAAAGAGTAAACAAATGAAAC---AAA-GTTCAAACCATGTGTGCTAGAGGAATGGTTGAGCATGAGGAGAAGGAATTAGGAATTACATCTC----TAtcagggaagactttccaaagaaagtaatgtttgagagatgtcttaaaggat-atttggagttagccaggcaaagaggggaatgggaattctaggcaaaggggaaaaacatccaccaacttactgaggggaaggagc-tgctacacctcaaaaacggcctgttagtcactgtgacaggggcctgtgtgtgagacagtgcaagagatggggccagtgtaggtgggcagaagctagatcAAGATTTTTATCCCGAGAGTGTTG-AGAGAGACAGTA-AATGGTTTTGAGTAGGAGGATTTTTTTTTTTGGAAAAATCATGACCTTTGTATGTAGGATGGGATGGAGCATGAGACAGGCCTGAGGGCTGAGGATTATTCAGAACATCTCTGTT--G--AACAGAGAAGAGCCTGGACTAG------GACATACACTGAAAA--------AGTAAGAGATG-----------------AC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40445779 618 + 149736546 ATGCAGGCAGGACATGTGATATGCTCGCATATGCATTTCA------------TTCATAACATCATCCACAACATGCTC-----------TGTGTTAGCAGACCCTCTGCTAGAAGACATCATTTAATTTCCTCAGCAAGTGCCCCCA-----ACTAGAAATCAACcaaa-gcagtaataaatgctgagataatgcgatgtggaagaatagcagggtatggggaacagtaactaggaattaaatttcacaacagcggggaaggtttgttaaaggaagtactagctgagaaaatacttaagtatg-aactggagttagccaagtaaagaagggaaggagagcct----caaaggtc-gagACATCCATGAA------------------------------GGGAAGCTGTGTTATATTCAGCGGAGCAGAAGTCTCTGTAAAAGAGAGG--------------CAGGGTAGGCAGGAAAGAAC----------CTTCTAGTTTGAAAGTGTTG-AATTAACCATT-CAATGGCTTTGAGTAGGGATA----TTTTT----AAAAAGTCGGGGTTTTATGTACAGAGTGGACTAGACCAGAAACAA-GTTTTGATATGGAGGAGTACTCACAAGGATTTTGTTGGG--AGCAGAAAAAGGCCTGAATGAG------GAGAGG-AGCGAACAGGCCTCGGGTTGAGAGATGTTTGGGAACTAGCAATAAC
i mm10.chr6                C 0 C 0
s canFam3.chr16             52135294 647 -  59632846 ACGCAGACGAGGAA------------------GCATGTCACGGTATGTCTATTTCATTCATTCATTTAAA-----ATGGAGCACCTTGATAT-----CAGACCTTCTGCTGGCAAA--TGATTCACTGT-GTCAAAAAGTGTCCTTAAAATGAATGAAGA-TGAACAACTGAGACAATAAA-GTTCAGATTAGGGGTGTGGGGGAAGTGGTGTGGCAAGATGAGAAAGAATTAGGAATTAAGTCCC--AAgatcagggatgcctttccaaagaaagtcaagtctgagagcggtcttcaaggatgagctagcgtgagccaggtaaggaagcgaatgagaacttgaggccaaggaa-aaagtgtctaacaggttaggaggaggaaagatcatgtcacacctag-aaactgcacggtgct-agagatac-ggggcctgtatacgagaagttgcaggcagcgaggtcagaggaggtaggcaggagctagattgAGATTTT-ATTCTGAAAGCTTTG-AGACCTTCATTA-AATAGTTTTGATCAGAGGCC-------TTTTGGAACAAT--TGACCTTCATGTGCAGGCTGCG-TGGAGTGGGAGAGA-CCCTGAAAGCAGAGCAGTATTCATAGCAGATCTGTT--GACAAAGGAGAAAGGTCTAAACTACATTGGTGGTACACAGTGATAA--------ATTGAGGGATG-----------------GT
i canFam3.chr16            C 0 I 8822

a score=1277231.000000
s hg38.chr7_GL383534v2_alt     83634 352 +    119183 TTGAT-GGAGAGGTCGAGGGAAAACGAA----AACAATCTGATGAC--TGAGGTTT----CTTGCTTGGTTCAGTAGA-------CAGAATC-------AAGATAGATGACACT-AAGGGATATATGGGTTTGGAGAAaagcagagatgtggtataaaaagttggataactgggtatggggcacaagaaaa-caatgaaaattggaaatccgtatttggatatctacagcatttaggaagtagttgaggccatgggtgg----------agataaggtcacatagcctgagtgccagagtaaggagagaagtggccc-aGTTAGAAATCTTGGATAATGC----ATTTAAGGGAGAGGCAGAGAACAGGGCTTGG-GAGCAAAACT-GAAATGCAA
s panTro4.chr7             143183603 352 + 161824586 TTGAT-GGAGAGGTCGAGGGAAAACGAA----AACAATCTGATGAC--TGAGGTTT----CTTGCTTGGTTCAGTAGA-------CAGAATC-------AAGATAGATGACACT-AAGGGATATATGGGTTTGGAGAAaagcagagatgtggtataaaaagttggataactgggtatggggcacaagaaaa-caatgaaaattggaaatccgtatttggatatctacagcatttaggaagtagttgaggccatgggtgg----------agataaggtcacatagcctgagtgccagagtaaggagagaagtggccc-aGTTAGAAATCTTGGATAATGC----ATTTAAGGGAGAGGCAGAGAACAGGGCTTGG-GAGCAAAACT-GAAATGCAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139005711 363 + 157549271 TTGATGGGAGGGGTTGAGGGAAAATGAA----AACAATCTGATGAC--TGAGGTTT----CTTGCTTGGTTCAGTAGA-------CCGAATC-------AAGATAGATGACACT-AAGGGATATATGGGTTTGGAGAAaagcagagatgtggtacaaaaagttggataactgggtatggggcacaagaaaa-caatgaaaattggaaatccgtatttggatatctacagcatttaggaagtagttgaggccatgggtcacataagggtcacataaggtcacatagcctgagtgccagagtaaggagagaagtggccc-aGTTAGAAATCTTAGATAATGC----ATTTAAGGGAGAGGCAGAGAACAGGGCTTGG-GAGCAAAACT-GAAATGCAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93127031 352 + 110113093 TTGAT-GGAGGGGTTGAGGGAAAACGAA----AACAATCTGATGAC--TGAGGTTT----CTTGCTTGGTTCAGTAGA-------CAGAATC-------AAGATAGATGACACT-AAGGGATATATGGGTTTGGAGAAaagcagagatgtggtataaaaagttgggtaactgggtctggggcacaagaaaa-caatgaaaattggaaatcagtatttagatatctacagcatttaggaagtaggtgaggccatgggtag----------agataaggtcacatagcctgagtgccagagtaaggagagaagtggccc-agttagaaatcttggataatgc----atttaagggacaggcagagaacaggGCTTGG-GAGCAAAACT-GAAATGCAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181020650 356 + 198365852 TTGAT-GGAGGGGTTCAGGGAAAAAGAA----AACAATCTGATGAC--TGAGGTTT----CGTGCTTGGTTCAGTAGA-------CGGAATC-------AAGATAGGTGACACT-GAGGAATATACGGGTTTGGAGAAaagcagagacgtggtataaaaagttggataactggatctggggcacaagaaaa-caatgaaaattggagatccatatttggatatctacagcatttaggaagtagttgaagccatgggtgg----------agataaggtcacatagcctgagtgccagagtaaggagagaaatggccc-agttagaaatcttggataatgccaaggtttaagggagaggcaaagaacagggcttgg-gagcaaaagt-gaAATGCAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174768821 356 + 192294377 TTGAT-GGAGGGGTTCAGGGAAAAAGAA----AACAATCTGATGAC--TGAGGTTT----CTTGCTTGGTTCAGTAGA-------TGGAATC-------AAGATAGGTGACACT-GAGGAATATACGGGTTTGGAGAAaagcagagacgtggtataaaaagttggataactggatctggggcacaagaaaa-caatgaaaattggagatccatatttggatatctacagcatttaggaagtagttgaagccatgggtgg----------agataaggtcacatagcctgagtgccagagtaaggagagaaatggccc-agttagaaatcttggataatgccaaggtttaagggagaggcaaagaacagggcttgg-gagcaaaagt-gaAATGCAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163437044 356 + 180432695 TTGAT-GGAGGGGTtcagggaaaaagga----aacaatctGATGAC--TGAGGTTT----CTTGCTTGGTTCAGTAGA-------TGGAATC-------AAGATAGGTGACACT-GAGGAATATACGGGTTTGGAGAAAAGCAGAGATGTGGTATAAAAAGTTGGATAACTGGATCTGGGGcacaagaaaa-caatgaaaattggAGATCCATATTTGGATATCTACAGCATTTAGGAAGCACTTGAAGCCATGGGTGG----------AGATAAGGTCACATAGCCCGAGTGCCAGAGTAAGGAGAGAAATGGCCC-AGTTAGAAATCTTGGATAATGCCAAGGTTTAAGGGAAAGGCAAAGAACAGGGCTTGG-GAGCAAAAGT-GAAATGCAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110465821 356 + 127223203 TTGAT-GGAGGGGTTCAGGGAAAAAGGA----AACAATCTGATGAC--TGAGGTTT----CTTGCTTGGTTCAGTAGA-------TGGAATC-------AAGATAGGTGACACT-GAGGAATATACGGGTTTGGAGAAaagcagagatgtggtataaaaagttggataactggatctggggcacaagaaaa-caatgaaaactggagatccgtatttggatatctacagcatttaggaagtagttgaagccatgggtgg----------agataaggtcacatagcctgagtgccagagtaaggagagaagtggccc-agttagaaatcttggataatgccaaggtttaagggagaggcagacgaCAGGGCTTGG-GAGCAAAAGT-GAAATGCAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23809560 349 - 128169293 TTGAT-GGAGGAATT---GGAAAAAGAAAAACAACAATCCGATGAC--TGAGGTTT----CTTGC--------GTAGA-------TGGAATT-------AAGTTAGGTGTCACT-GAGGGATATACAGGTTTGGAGAAAAGCAGCGATGTGGCATAAAAAGTTGGATAACTGGTTCTGGGGCACAAGAAAA-CAATGAAACTCGGAGATCCATATTTGGATATTGACAGCATTTGGGAAGCAGTAGAAGCCATGGGTGA----------AGATAAGGTCACATAGCCTGAGTGCCAGAGTAAGGAGAGCAGTGGCCC-AGTTAGAAATCTTGGATAATGCCAAGATTTAAGGGAGAGGCAGAGAACAGGGCTTGG-GAGCAAAACT-GAAATGCAA
i calJac3.chr8             C 0 I 296
s mm10.chr6                 40446397 335 + 149736546 TTGAT-GGAGGTGTTGCAGAGAAAAGAG----AGATCTAAGATGATGGTGAGCCTT----CTTGCTTGATTGAATAGG-------TGGAATCTTGAATTAAGATGAGAGACACT-GAGG-ATATACAAGTTTGGGGGAA------TAAGTCGAATAAATGAATGGCTAAGTAGGACAAAGG-----GAAAA-CAACTGAAGCCAGGGATCCCCTTTTGGCCATCTGTGGCATTTAGAAAACCAGTGAAGCCATTGGTGG----------GGATTAGGTCACGTGTTTTGAGTACTGGTATGAGAAGAG------------------ACCTTCAATTATGCCAAGA--TGAAGAACAGGTAGAGAAGAGAGCATGGAGAGGTAGGTG-GAAATACAA
i mm10.chr6                C 0 I 1
s canFam3.chr16             52144763 370 -  59632846 TTGAT-GGAGGGGTTGAGGGAAAAGGAG----GGATCTAGGGTGCT-GTGAAGTTTCTGCCTTGTTTGATTGAGTAGAGGGTACCTTGGATC-------AAGACAGTTGATGCTAGAGGCATTTATAGGTTTGGAGAACA-CAgaggtgtcctataaatcattgaataaatgtttctggggtgcaggaaaaccaaactacattggagatctatccttggatatcattagcattttggaagttgttgaagctttgggtgc----------agataagctcaagtagcctgagtgccagagtaagaagagaagtggtccaaattaggaatcctgga-agtgccaagatttgaggggcaggaaaagaacagagcttgg-gagggaaactggaaaTGCAA
i canFam3.chr16            I 8822 C 0

a score=881699.000000
s hg38.chr7_GL383534v2_alt     83986 250 +    119183 CTGGGAAAGTACATACTTTATGA-AAACACAGTTTGCGTTAGAGGAAAGAG-----------------G--CTTGATGGC--TGATCAT------TGT---------------TATGCAGAAGACaaagctg------catgggaaaggaggattggct-ta-gtcagtcttgtccaagggatggaaccaaaaatcatgtg----aaa----ttcagttcactgtaaggacttcctgacagaatcatctagagatagaagagcatgcttaggaggt-gtaagctccctgtggctaaaagcatagaacact
s panTro4.chr7             143183955 250 + 161824586 CTGGGAAAGTACATACTTTATGA-AAACATCGTTTGCGTTAGAGGAAAGAG-----------------G--CTTGATGGC--TGATCAT------TGT---------------TATGCAGAAGACaaagctg------catgggaaaggaggattggct-ta-gtcagtcttgtccaagggatggaaccaaaaatcatgtg----aaa----ttcagttcactgtaaggacttcctgagagaatcatctagagatagaagagcatgcttaggaggt-gtaagctgcctgtggctaaaagcatagaacact
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139006074 250 + 157549271 CTGGGAAAGTACATACTTTATGA-AAACATAGTTTGTGTTAGAGGAAAGAG-----------------G--CTTGACGGC--TGATCAT------TGT---------------TACGCAGAAGACaaagctg------catgggaaaggaggattggct-ta-gtcagtcctgtccaacggatggaaccaaaaatcatgtg----aaa----ttcagttcactgtaaggacttcctgacagaatcatctagagatagaagagcatgcttaggaggt-gtatgctccctgtggctaaaagcatagaacact
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93127383 250 + 110113093 CTGGGAAAGTACATACTTTATGA-AAACATAGTTTGCGTTAGAGGAAAGAG-----------------G--CTTGGCGGC--TGATCAT------TGT---------------TATGCAGAAGACaaagctg------catgggaaaggaggattggct-ta-gtcagtcttgtccaagggattgaatgagaaatcatatg----aaa----ttcagttcactgtaaggacttcctgacagaatcatctagagatagaagagcatgcctaggaggt-gtatgctccctgtggctaaaagcatagaacact
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181021006 249 + 198365852 CTGGGAAAGTACATACTTTATGC-AAACATAGTTTGTGTTAGAGGAGAGAG-----------------G--CTTGGCGGC--TGATCAT------TGT---------------TATGCAGAAGACaaagctg-------atgggaaaggaggattggct-ta-gtcagtcttgtccgagggattgaaccagaaatcatgtg----aaa----ttcagttcactgtaaggacttcctgacagaatcatctagagatagaagagcatgcttaggaggt-gtacgctccctgtggctaaaagcatagaacact
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174769177 249 + 192294377 CTGGGAAAGTACATACTTTATGC-AAACATAGTTTGTGTTAGAGGAAAGAG-----------------G--CTTGGCGGC--TGATCAT------TGT---------------TATGCAGAAGACaaagctg-------atgggaaaggaggattggct-ta-gtcagtcttgtccgagggattgaaccagaaatcatgtg----aaa----ttcagttcactgtaaggacttcctgacagaatcatctagagatagaagagcatgcttaggaggt-gtacgctccctgtggctaaaagcatagaacact
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163437400 249 + 180432695 CTGGGAAAGTACATACTTTATGC-AAACATAGTTTGTGTTAGAGGAAAGAG-----------------G--CTTGGCGGC--TGATCAT------TGT---------------TATGCAGAAGACAAAGCTG-------ATGGGAAAGGAGGATTGGCT-TA-GTCAGTCTTGTCCAAGGGATTGAACCAGAAATCATGTG----AAA----TTCAGTTCACTGTAAGGACTTCCTGACAGAATCATCTAGAGATAGAAGAGCATGCTTAGGAGGT-GTACGCTCCCTGTGGCTAAAAGCATAGAACACT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110466177 247 + 127223203 CTGGGAAAGTACATACTTTATGA-AAACATGGTTTGTGTCAGAGG--AGAG-----------------G--CTTGGTGGC--TGATCAT------TGT---------------TATGCAGAAGACaaagctg-------atgggaaaggaggattggct-ta-gtcagtcttgtccaagggattgaaccagaaatcatgtg----aaa----ttcagttcactgcaaggacttcctgacagaatcatctagagatggaagagcatgcttaggaggt-gtacgctccctgtggctaaaagcatagaacact
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23810205 249 - 128169293 cTGGGAAAGTACATACTTTATGA-AAACATAGCTTACGTTAGAAGAAAGAG-----------------G--CTTCGCGAA--TGATCAT------TGT---------------TATGCAgaaggcaaa-ctg------catgggaaaggagtattagtt-ta-gtcagttttgtccaagggactgaaccagaaataatgtg----aaa----ttcagttcactgtaaggcctttctggcagaatcgtctagagatagaaaagcatgcttaggagat-ataagctccctgtggctaaaagcgtcgaacact
i calJac3.chr8             I 296 C 0
s mm10.chr6                 40446733 279 + 149736546 AGGGAAAAATCCCTACTCCACAA-TGTTACATATGAACCAGGATGAGAGCA-----------------GATCATGGTGAC--AGATCAG------GGTGGCAGCTAGTGGAGCTTTGCTGAAGACATTGCTGCTGATGCACAGGAAAGGAAAGTTGGCT-TCTTTTAGCTTTTTCCAAGAGATGCAAGCAAAAAGTGCGTGGCACAAA----CCTCCTTCTCCATAAGGGATTCTTAGCAGAATCACTGAATACTAGAAAAACATCTTTAGGCAGTAGTAAGTTTGCTACAGCTAACTGCATTAAACGCT
i mm10.chr6                I 1 I 72
s canFam3.chr16             52145133 280 -  59632846 ATGAAAAAGTGCACACTTTATGAGGAATATAGTTTGGATCAGAagagagagagagagagagagagagag--agagGGGGCAATGATCAGTGGCGATGT---------------TATGCTAAAGACAAGGATG------CAGAGTAATGGAGgattgactctg-ttcagccttaccaaagggagaggactagaaatcatgtg----aagtgacttgaggtcactgtaaagacttcctagcagaacaacctaga-atagaagagtttcccgaggaagt-catgggtccctgtggctaaatgcattgaacact
i canFam3.chr16            C 0 C 0

a score=112478.000000
s hg38.chr7_GL383534v2_alt     84236 37 +    119183 cattgatgaccgaccacttggtagaaatactgcagaa
s panTro4.chr7             143184205 37 + 161824586 cattgatgaccgaccacttggtaggaatactgcagaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139006324 33 + 157549271 cactgatgactg----cttggtaggaatacggcagaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93127633 33 + 110113093 cattgatgacca----tttggtaggaatactgcagaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181021255 33 + 198365852 cattgatgacca----cttggtaggaatactgcagaa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174769426 33 + 192294377 cattgatgacca----cttggtaggaatactgcagaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163437649 33 + 180432695 CATTGATGACCA----CTTGGTAGGAATACTGCAGAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110466424 33 + 127223203 cattgatgacca----cttggtaggaatactgcagaa
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23810454 33 - 128169293 cactcatgacca----tttggtaggaatactgcagaa
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52145413 33 -  59632846 agttgatgacca----cttggcaggaatgttgtagaa
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40447012 72 + 149736546 I

a score=1212527.000000
s hg38.chr7_GL383534v2_alt     84273 393 +    119183 gggatttgttagtctgtttgccttgctacaaaggaatacctgagactgggtaaattataaagaaaagaggtttatttggcttacagttctgcaggctgtacagtaagcatattgcctgtatctgcttctggtgagggcctcaggaagttgacagtcatggcagaaggtggacagaaacaaggcagcttgttacatggtgagagaaaaagtgagacagtggaagcaagacaggaagga--agtgtcaggctcattttaaacaaccagatctggtgtgaactaacaaagtgagaactggttcattaccatgaggatggcaccaaggaatctacctctgtaatccaaatgccacccaccaggccctacctccagcactggggattatatttcaacatg
s panTro4.chr7             143184242 393 + 161824586 gggatttgttagtctgtttgccttgctacaaaggaatacctgagactgggtaaattataaagaaaagaggtttatttggcttacagttctgcaggctgtacagtaagcatattgcctgtatctgcttctggtgagggcctcaggaagttgacagtcatggcagaaggtggacagaaacaaggcagcttgttacatggtgagagaaaaagtgagacagtggaagcaagacaggaagga--attgtcaggctcattttgaacaaccagatctggtgtgaactaacaaagtgagaactggttcattaccatgaggatggcaccaaggaatctacctctataatccaaatgccacccaccaggccctacctccagcactggggattatatttcaacatg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139006357 391 + 157549271 gggatttgttagtctgtttgccttgctacaaaggaatacctgagactgggtaaattataaagaaaagaggtttatttggcttacagttctgcaggctgtacagtaagcatattgcttgtatctgcttctggtgagggcctcaggaagttgacaatcatggcagaaggtggacagaaacaaggcagcttgttacacggtgagagaaaaagtgagacagtggaagcaagacaggaagga--agtgtcaggctcattttaaacaaccagatctggcgtgaactaac--agtgagaactggttcattaccatgaggatggcaccaaggaatccacctctgtaatccaaatgccacccaccaggccctacctccagcactggggattatatttcaacatg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93127666 392 + 110113093 gggatttgttagtctgtttgccttgcttcaaaagaatacctgagactgggtaaattataaagaaaagaggtttatttggcttacagttctgcaggctgtacagtaagcatagtgcctgtatctgcttctggtgagggcctcaggaagttgacaatcatggcagaaggtggacagaaataaggcagcttgttacatggtgagagaaaaagtgagagggtggaagcaagacaggaagga--agtgtcaggctc-ttttaaacaaccagatctggtgtgaactaacaaagtgagaactggctcattatcatgaggatggcaccaaggaatccacctctgtaatccaaatgccacccaccaggccctacctccagcactagggattatatttcaacatg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181021288 394 + 198365852 gggatttgttagtgtgtttgccttgctacaaaggaatacctgagactgggtagattataaagaaaagaggtttatctggcttacagttctgcaggctgtacagtaagcatattgcccatatctgcttctggtgagggcctcaggaagttgacaatcatggcacaaggtgagcagaaacgaggcagcttgttacatggtgagaaaagaagtgagagagtggaagcaagacaggaaggattgctgtcaggctc-ttttaaacaaccagatctggcgtgaactaacaaaatgagaactggttcattaccatgaggatggcaccaaggaacccacctctataatccaaatgccacccaccaggccctatctccggcactggggattatatttcaacatg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174769459 394 + 192294377 gggatttgttagtgtgtttgccttgctacaaaggaatacctgagactgggtagattataaagaaaagaggtttatctggcttacagttctgcaggctgtacagtaagcatattgcccatatctgcttctggtgagggcctcaggaagttgacaatcatggcacaaggtgagcagaaacgaggcagcttgttacatggtgagagaagaagtgagagagtggaagcaagacagcaaggattgctgtcaggctc-ttttaaacaaccagatctggtgtgaactaacaaaatgagaactggttcattaccatgaggatggcaccaaggaacccacctctataatccaaatgccacccaccaggccctatctccggcactggggattatatttcaacatg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163437682 394 + 180432695 GGGATTTGTTAGTGTGTTTGCCttgctacaaaggaatacctgagactgggtagattataaagaaaagaggtttatctggcttacagttctgcaggctgtacagtaAGCATATTGCCcatatctgcttctggtgagggcctcaggaagttgACAATCATGGCACAAGGTGAACAGAAACGAGGCAGCTTGTTACATGGTGAGAGAAGAAGTGAGAGAGTGGAAGCAAGACAGGAAGGATTGCtgtcaggctc-ttttaaacaaccagatctggcGTGAACTAACAAAATGAGAACTGGTTCATTACCATGAGGATGGCACCAAGGAACCCACCTCTATAATCCAAATGCCACCCACCAGGCCCTATCTCCGGcactggggattatatttcaacatg
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110466457 394 + 127223203 gggatttgttagtgtgtttgccttgctacaaaggaatacctgagactgggtagattataaagaaaagaggtttatctggcttacagttctgcgggctgtacagtaagcatattgcccatatctgcttctggtgagggcctcaggaagttgacaatcatggcacaaggtgaacagaaacaaagcagcttgttacatggtgagagaagaagtgagagagtggaagcaagacaggaaggattgctgtcaggctc-ttttaaacaatcagatctggcgtgaactaacaaaatgagaactggtacattaccatgaggatggcaccaaggaacccacctctataatccaaatgccacccaccaggccctatctccggcactggggattatatttcaacatg
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23810487 389 - 128169293 gggatttgttagtctgtttgccttgctataaaggaatacttgagactagataaattataaagaaatgagatttatttggcttacagttctgcaggctgtacagtaagcatagtgcccatatctgcttctggtgagggcctcaggaagctgacaatcatggcagaaggtgaacagacacaaggcagcttgttacatggtgagag---aagtaagagagtggaaacaagacagggagga--agtgtcaggctc-ttttaaacaaccaggtcttgcatgaactaacaacctgaaaactggttcattaccatgaggatggcaccaaggaatccacccctatgatccaaatgccacctaccaggccctacctccagcactggggattatatttcaacatg
i calJac3.chr8             C 0 I 17
e mm10.chr6                 40447012  72 + 149736546 I
e canFam3.chr16             52145446   0 -  59632846 C

a score=49934.000000
s hg38.chr7_GL383534v2_alt     84666 17 +    119183 atatCCAAATGATACCA
s panTro4.chr7             143184635 17 + 161824586 atatCCAAATGATACCA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139006748 17 + 157549271 atatCCAAATGATACCA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93128058 17 + 110113093 atatCCAAATGATATCA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181021682 17 + 198365852 atatCCAAATGGTATCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174769853 17 + 192294377 atatCCAAATGGTATCA
i macFas5.chr3             C 0 I 3
s papAnu2.chr3             163438076 17 + 180432695 atatCCAAATGATAACA
i papAnu2.chr3             C 0 I 2
s chlSab2.chr21            110466851 17 + 127223203 atatCCAAATGATAACA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23810893 17 - 128169293 acatccaaatgatatca
i calJac3.chr8             I 17 C 0
e mm10.chr6                 40447012 72 + 149736546 I
e canFam3.chr16             52145446  0 -  59632846 C

a score=4200.000000
s hg38.chr7_GL383534v2_alt     84683 2 +    119183 GG
s panTro4.chr7             143184652 2 + 161824586 GG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139006765 2 + 157549271 GG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93128075 2 + 110113093 GG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181021699 2 + 198365852 GG
i rheMac3.chr3             C 0 C 0
s chlSab2.chr21            110466868 2 + 127223203 GG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23810910 2 - 128169293 GG
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40447012 72 + 149736546 I
e canFam3.chr16             52145446 0 -  59632846 C
e papAnu2.chr3             163438093 2 + 180432695 I
e macFas5.chr3             174769870 3 + 192294377 I

a score=1911.000000
s hg38.chr7_GL383534v2_alt     84685 1 +    119183 A
s panTro4.chr7             143184654 1 + 161824586 A
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139006767 1 + 157549271 A
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93128077 1 + 110113093 A
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181021701 1 + 198365852 A
i rheMac3.chr3             C 0 C 0
s papAnu2.chr3             163438095 1 + 180432695 A
i papAnu2.chr3             I 2 C 0
s chlSab2.chr21            110466870 1 + 127223203 A
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40447012 72 + 149736546 I
e canFam3.chr16             52145446 0 -  59632846 C
e calJac3.chr8              23810912 0 - 128169293 C
e macFas5.chr3             174769870 3 + 192294377 I

a score=106011.000000
s hg38.chr7_GL383534v2_alt     84686 43 +    119183 TTCAAGCATCAGGGGACTCATCATATTGACTGGGCCTTTAAAA
s panTro4.chr7             143184655 35 + 161824586 TTCAAGCATCAGGGGACTCATGATATTGACTGGGC--------
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139006768 35 + 157549271 TTCAAGCATCAGGGGACTAATCATATTGACTAGGC--------
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93128078 43 + 110113093 TTCAAGCACCAGGGGACTAATCATATTGACCGGGCCTTTAAAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181021702 40 + 198365852 TTCAAGCATCAGGGGACTAATCATATTGACTGGGCCTTTA---
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174769873 43 + 192294377 TTCAAGCATCAGGGGACTAATCATATTGACTGGGCCTTTAAAA
i macFas5.chr3             I 3 C 0
s papAnu2.chr3             163438096 42 + 180432695 TTCAAGCATCA-GGGACTAATCATATTGACTGGGCctttaaaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110466871 40 + 127223203 TTCAAGCATCAGGGGACTAATCATATTGACTGGGCCTTTA---
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23810912 43 - 128169293 TTCAAGCATCAGGGGACTAATTATATTGACTGGGCCTTTAAAA
i calJac3.chr8             C 0 T 43
e mm10.chr6                 40447012 72 + 149736546 I
e canFam3.chr16             52145446  0 -  59632846 C

a score=12305.000000
s hg38.chr7_GL383534v2_alt     84729 24 +    119183 CATCCAAACATCCCAATAATACCA
s nomLeu3.chr13             93128121 24 + 110113093 CATCCAAACATCCCAATAATATCA
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174769916 24 + 192294377 AATCCAAACATCCCAATAATATCA
i macFas5.chr3             C 0 T 70
s papAnu2.chr3             163438138 24 + 180432695 aatccaaacatCCCAATAATATCA
i papAnu2.chr3             C 0 T 69
e mm10.chr6                 40447012 72 + 149736546 I
e canFam3.chr16             52145446  0 -  59632846 C
e calJac3.chr8              23810955 43 - 128169293 T
e chlSab2.chr21            110466911  0 + 127223203 C
e rheMac3.chr3             181021742  0 + 198365852 C
e ponAbe2.chr7             139006803  0 + 157549271 C
e panTro4.chr7             143184690  0 + 161824586 C

a score=1353.000000
s hg38.chr7_GL383534v2_alt     84753 3 +    119183 GGA
s nomLeu3.chr13             93128145 3 + 110113093 GAA
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174769870 3 + 192294377 GGA
i macFas5.chr3             T 70 C 0
s papAnu2.chr3             163438093 3 + 180432695 GGA
i papAnu2.chr3             T 69 C 0
e mm10.chr6                 40447012 72 + 149736546 I
e canFam3.chr16             52145446 0 -  59632846 C
e calJac3.chr8              23810955 43 - 128169293 T
e chlSab2.chr21            110466911 0 + 127223203 C
e rheMac3.chr3             181021742 0 + 198365852 C
e ponAbe2.chr7             139006803 0 + 157549271 C
e panTro4.chr7             143184690 0 + 161824586 C

a score=28433.000000
s hg38.chr7_GL383534v2_alt     84756 34 +    119183 TTCAAGCATCAGGGGACTCATCATATTGACTGGG
s nomLeu3.chr13             93128148 34 + 110113093 TTCAAGCATCAAGGGACTAATCATATTGACTGGG
i nomLeu3.chr13            C 0 T 70
s macFas5.chr3             174769873 34 + 192294377 TTCAAGCATCAGGGGACTAATCATATTGACTGGG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163438096 33 + 180432695 TTCAAGCATCA-GGGACTAATCATATTGACTGGG
i papAnu2.chr3             C 0 C 0
s calJac3.chr8              23810912 34 - 128169293 TTCAAGCATCAGGGGACTAATTATATTGACTGGG
i calJac3.chr8             T 43 C 0
e mm10.chr6                 40447012 72 + 149736546 I
e canFam3.chr16             52145446  0 -  59632846 C
e chlSab2.chr21            110466911  0 + 127223203 C
e rheMac3.chr3             181021742  0 + 198365852 C
e ponAbe2.chr7             139006803  0 + 157549271 C
e panTro4.chr7             143184690  0 + 161824586 C

a score=16272.000000
s hg38.chr7_GL383534v2_alt     84790 9 +    119183 CCTTTAAAA
s panTro4.chr7             143184690 8 + 161824586 -CTTTAAAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139006803 8 + 157549271 -CTTTAAAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93128112 9 + 110113093 CCTTTAAAA
i nomLeu3.chr13            T 70 C 0
s rheMac3.chr3             181021742 3 + 198365852 ------AAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174769907 9 + 192294377 CCTTTAAAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163438129 9 + 180432695 Cctttaaaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110466911 3 + 127223203 ------AAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23810946 9 - 128169293 CCTTTAAAA
i calJac3.chr8             C 0 T 65
e mm10.chr6                 40447012 72 + 149736546 I
e canFam3.chr16             52145446 0 -  59632846 C

a score=7218.000000
s hg38.chr7_GL383534v2_alt     84799 4 +    119183 CATC
s panTro4.chr7             143184698 4 + 161824586 CATC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139006811 4 + 157549271 CATC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93128121 4 + 110113093 CATC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181021745 4 + 198365852 AATC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174769916 4 + 192294377 AATC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163438138 4 + 180432695 aatc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110466914 4 + 127223203 AATC
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40447012 72 + 149736546 I
e canFam3.chr16             52145446 0 -  59632846 C
e calJac3.chr8              23810955 65 - 128169293 T

a score=59548.000000
s hg38.chr7_GL383534v2_alt     84803 19 +    119183 CAAACATCCCAATAATATC
s panTro4.chr7             143184702 19 + 161824586 CAAACATCCCAATAATATC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139006815 19 + 157549271 CAAACATCCCAATAGTATC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93128125 19 + 110113093 CAAACATCCCAATAATATC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181021749 19 + 198365852 CAAACATCCCAATAATATC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174769920 19 + 192294377 CAAACATCCCAATAATATC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163438142 19 + 180432695 caaacatCCCAATAATATC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110466918 19 + 127223203 CAAACATCCCAGTAATATC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23810890 19 - 128169293 caaacatccaaatgatatc
i calJac3.chr8             T 65 C 0
e mm10.chr6                 40447012 72 + 149736546 I
e canFam3.chr16             52145446  0 -  59632846 C

a score=216669.000000
s hg38.chr7_GL383534v2_alt     84822 62 +    119183 AGGATTCAAGCATCAAGGGACTAATCATGTTGACTGGGCCTTTAAAATCCTTCTCTGTCCCA
s panTro4.chr7             143184721 62 + 161824586 AGGATTCAAGCATCAAGGGACTAATCATGTTGACTGGGCCTTTAAAATCCTTCTCTGTCCCA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139006834 62 + 157549271 AGGATTCAAGCATCAGGGGACTAATCATGTTGACTGGGCCTTTAAAATCCTTCTCTGTCCCA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93128144 62 + 110113093 AGAATTCAAGCATCAAGGGACTAATCATATTGACTGGGCCTTTAAAATCCTTCTCTGTCCCA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181021768 62 + 198365852 AGGATTCAAGCATCAGGGGGCTAATTGTATTGACTGGGCCTTTAAAATCCTCCTGTGTCCCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174769939 62 + 192294377 AGGATTCAAGCATCAGGGGGCTAATTGTATTGACTGGGCCTTTAAAATCCTCCTGTGTCCCA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163438161 62 + 180432695 AGGATTCAAGCATCAGGGGGCTAATTGTATTGACTGGGCCTTTAAAATCCTTCTCTGTCCCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110466937 62 + 127223203 AGGATTCAAGCATCAGGGGGCTAATTGTATTGACTGGGCCTTTAAAATCCTTCTCTGTCCCG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23810909 61 - 128169293 aGG-TTCAAGCATCAGGGGACTAATTATATTGACTGGGCCTTTAAAATCCTTCTCTGTCCCA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52145446 62 -  59632846 agtattcaagcatcaggggactaattgtaccaaacaggtctttaaagtctttgcaagtcctg
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40447012 72 + 149736546 I

a score=3998269.000000
s hg38.chr7_GL383534v2_alt     84884 1171 +    119183 AGAT-ACTATGTTTGTGTTTTT-----GTGAGAGGTtgccttctcttctcaccatcttcataagtcaagtagctatcccccaaatttcccttatctccctcaatcatctgtgctacagctattccttatggaattatttgccctctctagagcaca-tttatactctcaacctgtgtcatctttcaataaattttcaaattcctctgcttccaagcagaagttcttttcatatgtcttatctcaaac-----------------tatgttatttgagattt-tgaaagggttactcataatt--ctattattccagCAATAACGACTATATTAACA--------------------------------------------------------------------------TAATATTCTTCCCTACATCATAAGTGGTGCTCACAAAttctcttggccctcatatttcctgactagaaattctaatattgtcttccctgatatgaataat---------ttttatctgaatattttctaggccccttata-ctttctttgagatgtgacaactagaactat----gtgctgcattccaggtgtg----gcta--cccactgtttcatatgtaatagatgtgttttactttccatatgataatcagcattAC-AAAAAACGAATTCTCAG---AATGACTTACTACAAAATGCTAGGTTCATTTTGC--AAATCACATTGATAACTGAGAAATATCAT----TAT--------AGTTTCACTTATTTTGAACCAATCCTCAGTCTTCATGATAAACACGCAGGAAAGCTGTGAGTCTGTCAGCGAGGGCTT---GTCTG------CCTCCTGGATTCTTCAAGCAGCCCTATGAACTCCAAGA---------------TAGGAGAAAC----------ACTTGACTCTGGCAATGACGTCATTTTTCTTCACTT-----AAAAAAAAGGCTAGGTTACTATGTAAATTCTATAGCTTCCTTCATTCCTGCTTAT-TCAATCATTTATTTAGTATTTACAATAGATCCAATATTCATTTTTGGTAGCCTCACATTCTTT------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------TGAATCA----------------CGCAA---TCTGGCTTCTGCTTCTACACTAAAATATCATGGGCAGAGATGATCAGAACTGTAGAAGTCTTTTAGAAAGAGCCTCACAGTGCAATGCTTATACTGTG------------GCCCCTGTGTGTGCTGCCATACTCCTGAAGATCCATAACACAGCTACTCCTCTGGCCCCTGACA-TCAGGTC---A-----GCATT---CTG---CC------TTGGAATTCTTTGGCTT-------TTCCCTTCGCCCTTTGGTTTCATTCTGGTTAGGTT-TAGGCTG
s panTro4.chr7             143184783 1171 + 161824586 AGAT-ACTATGTTTGTGTTTTT-----GTGAGAGGTtgccttctcttctcaccatcttcataagtcaagtagctatccccgaaatttcccttatctccctcaatcatctgtgctacagctattccttatggaattatttgccctctctagagcaca-tttatactctcaacctgtgtcatctttcaataaattttcaaattcctctgcttccaagcagaagttcttttcatatgtcttatctcaaac-----------------tatgttatttgagattt-tgaaaggattactcataatt--ctattattccagCAATAACGACTATATTAACA--------------------------------------------------------------------------TAATATTCTTCCCTACATCATAAGTGGCGCTCACAAATTCTCTTGGCCCTCATATTTCCTGACTAGAAATTCTAATATTGTCTTCCCTGATATGAATAAT---------TTTTAtctgaatattttctaggccccttata-ctttctttgagatgtgacaactagaactat----gtgctgcattccaggtgtg----gcTA--CCCACTGTTTCATATGTAATAGATGTGTTTTACTTTCCATATGATAATCAGCATTAC-AAAAAACGAATTCTCAG---AATGACTTACTACAAAATGCTAGGTTCATTTTGC--AAATCACATTGATAACTGAGAAATATCAT----TAT--------AGTTTCACTTATTTTGAACCAATCCTCAGTCTTCATGATAAACACGCAGGAAAGCTGTGAGTCTGTCAGCGAGGGCTT---GTCTG------CCTCCTGGATTCTTCAAGCAGCCCTATGAACTCCAAGA---------------TAGGAGAAAC----------ACTTGACTCTGGCAATGACGTCATTTTTCTTCACTT-----AAAAAAAAGGCTAGGTTACTATGTAAATTCTATAGCTTCCTTCATTCCTGCTTAT-TCAATCATTTATTTAGTATTTACAATAGATCCAATATTCATTTTTGGTAGCCTCACATTCTTT------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------TGAATCA----------------CGCAA---TCTGGCTTCTGCTTCTACACTAAAATATCATGGGCAGAGATGATCAGAACTGTAGAAGTCTTTTAGAAAGAGCCTCACAGTGCAATGCTTATACTGTG------------GCCCCTGTGTGTGCTGCCATACTCCTGAAGATCCATAACACAGCTACTCCTCTGGCCCCTGACA-TCAGGTC---A-----GCATT---CTG---CC------TTGGAATTCTTTGGCTT-------TTCCCTTCGCCCTTTGGTTTCATTCTGGTTGGGTT-TAGGCTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139006896 1173 + 157549271 AGAT-ACTATGTTTGTATTTTT-----GTGAGAGGTTGCCTTCTCTTCTCACCATCTTCATAAGTCAAGTAGCTATCCCCCAAATTTCACTTATCTCCCTCAATCATCTGTGCTAGAGCTATTCCTTATGGAATTATTTGCCTTCTCTGGAGCACA-TTTATACTTTCAACCTGTGTCATCTTTCAATAAATTTTCAAATTGCTCTACTTCCAAGCAGAAGTTCTTTTCATATGTCTTATCTCAAAC-------------------TGTTATTTGAGATTT-TGAAAGGATTACTCATAATT--CTACTATTCCAGCAATAACGACTATATTAACATAAT----------------------------------------------------------------------TAATATCCTTCCCTACATCATAAGTGGCACTCACAAATTCTCTTGGCCCTCATATTTCCTGACTAGAAATTCTAATATTGTCTTCCCTGATACGAATAAT---------TTTTATCTGCATATTTTCTAGGCCCCTtata-ttttccttgagatgtggcaactagaactat----gtgctgcattccaggtgtg----gcta--CCCACTGTTTCATATGTAATAGATGTGTTTTACTTTCCATATGATAATCAGCATTAC-AAAAAACGAATTCTCAG---AATGACTTACTACAAAATGCTAGGTTCATTTTGC--AAATCACATTGATAACTGAGAAATATCAT----TAT--------AGTTTCACTTATTTTGAACCAATACTCAGTCTTCATGATAAACACACAGGAAAGCTGTGAGTCTGTCAATGAGGGCTT---ATCTG------CCCCCTGGATTCTTCAAGCAGCCCTATGAACTCCAAGA---------------TAGGAGAAAC----------ACTTGACTCTGGCAATGACATCATTTTTCTTCACTT-----AAAAAAAAGGCTAGGTTACTGTGTATATTCTATAGCTTCCTTCATTCCTGCTTAT-TCAATCATTTATTTAGTATTTACAATAGATCCAATATTCATTTTTGGTAGACTCACATTCTTT------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------TGAATCA----------------TGGAA---TCTGGCTTCTGCTTCTACACTAAAATATCATGGGCAGAGATGATCAGAACTGTAGAAGTCTTTTAGAAAAAGCCTCACAGTGCAATGCTTATACTGTG------------GCCCCCGTGTGTGCTGCCATACTCCTGAAGATCCATAACACAGCTACTCCTCTGTCCCCTCACA-TCAGGTC---A-----GCATT---CTG---CC------TTGGAATTCTTTGGCTT-------TTCCTTTTGCCCTTTGGTTTCATTCTGGTTAGGTT-TAGGCTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93128206 1171 + 110113093 AGAT-ACTATGTTTG--TTTTT-----GTGAGAGGTtgccttctcttctcatcatcttcgtaagtcaagtagctatcccccaaatttcccttatctccctcaatcatctgtgctagagctattccttatggaattatttgccctctctggagcacattttatactctcaacctgtgtcatctttcaataaattttcaaattcctctacttccaagcagaagttcttttcatatgtcttatctcaaac-----------------tatgttatttgagattt-tgaaagggttactcataatt--ctactattccagCAATAACGACTATACTAACA--------------------------------------------------------------------------TAATATCCTTCCCTACATCATAAGTGGCGCTCACAGATTCTCTTGGCTCTCATATTTCCTGACTGGAAATTCCAATATTGTCTTCCCTGATATGAATAAT---------TTTTAtctgagtattttctaggccccttata-ttttccttgagatgtggcaactagaattat----gtgctgcattccaggtgtg----gcta--cccaCTGTTTCATATGTAATAGATGCATTTTACTTTCCATATGATAATCAGCATTAC-AAAAAACTAATTCTCAG---AATGACTTACTACAAAATTCTAGGTTCATTTTGT--AAATCACATTGATAACTGAGAAATATCAT----TAT--------AGTTTCACTTATTTTGAACCAATGCTCAGTCTTCATGATAAACACGCAGGAAAGCTGTGAGTCTGTCAACGAGGGCTT---GTCTG------CCCCCTGGATTCTTCAAGTAGCCCTATGAACTCCAAGA---------------TATGAGAAAC----------ACTTGACTCTGGCAATGATGTCATTTTTCTTCACTT----AAAAAAAAAGGCTAGGTTACTGTGTGTATTCCATAGCTTCCTTCATTCCTGCTTAT-TCAATCATTTATTTAGTATTTACAATAGATCCAGTATTCATTTTTTGTAGACTCACATTCTTT------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------TGAATCA----------------CGCAA---TCTGGCTCCTGCCTCTACACTAAAATATCAAGGGCAGAGATGATCAGAACTGTAGAAGTCTTTTAGAAAGAGCCTCACAGTACAGTGCTTATACTGTG------------GCCCCTGTGTGTGCTGCCATCCTCCTGAAGATCCATAACACAGCTACTTCTCTGGCCCCTGACA-TCAGGTC---A-----GCATT---CTG---CC------TTGGAATTCTTTGGCTT-------TTCCCTTTGCCCTTTGGTTTCATTCTGGTTAGGTT-TAGGCTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181021830 1239 + 198365852 AGAT-ACTATGTTTGTGTGTTT-----GTGAGAGGTTGCCTTCTCTTCTCACCATCTtcataagtcaagtagctatctgccaaatttccccaatctccttcaatcatctgtgctagagctattcctcatagaattatttgccctctctggagcaca-tttatactctcaacctgtgtcatctttcaataaattttcaaattgctgtacttctaagcagaagttctttccatatgtcttgtcccaaac-----------------tatgttctttgagattt-tgaaaggattactcataATT--CTACTATTCCAGC---AATGACTATATTAACATAATTAATATCCTTCCCTACATCATAAGTATTACTCATAATTCTACTATTCCAGCAATAATGACTATATTAACATAATATCCTTCCCTACATCATAAGTGGTGCTCACAGATTCTCTTGGCCCTCATATTCCCTGACTAGAAAATCTA-----GTCTTCCCTGATATGAATAAT---------TTTTATCTGAATATTTTCTAGGCCCCTtata-ttttcctt--gatgtggcaactagaactat----gtgctgcattccaggtgtg----gcta--CCCACTGTTTCATATGTAATAGATGCATTTTACTTTCCATATGATAATCAGCATTAC-AAAAAACTAATTCTCAG---AATGACTTACAACAAAATTCTAGGTCCATTTTGC--AAATCGCACTGATAACTGAGAAATATCAT----TAT--------AGTTTCGCTTATTTTGAACCAATACTCAGTCTTCATGATAAACACACAGGAAAGCTGTGAGTCTGTCAACAAGGGCTT---GTCTG------CCCCCTGGATTCTTCAAGCAGCCCTATGAACTCCAAGA---------------TATGAGAAAC----------ACTTAAGTCTGGCAATGACATCATTTTTCTTCAGTTTTAAAACAAAAAAGGCTAGGTTACTGTG-ATTTTCCATAGCTTCCTTCATTCCTGCTTAT-TCAATAATTTCTTTAGTATTTACAATAGATCCAATATTCATTTTTTGTAGACTCACATTCTTT------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------TGAATCA----------------TGCAA---TCTGGCTTCTGCTGCTACACTAAAATATCATGCGCAGAGACAATCAGAACTGTAGAAGTCTTTTAGAAAGAGCCTCACAGTGCAATGCTTATACTGTG------------GCCCCTGTGTGTGCTGCCATACTCCTGAAGATCCATAACACAGCTACTCCTCTGGCCCCTGACA-TCAGGTC---A-----GCATT---CTG---CC------TTCGAATTCTTTGGCTT-------TTCTCTTTGCCCTTCGGTTTCATTCTGGTTAGGTT-TAGGCTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174770001 1172 + 192294377 AGAT-ACTATGTTTGTGTGTTT-----GTGAGAGGTTGCCTTCTCTTCTCACCATCTtcataagtcaagtagctatctgccaaatttccccaatctccttcaatcatctgtgctagagctattcctcatagaattatttgccctctctggagcaca-tttatactctcaacctgtgtcatctttcaataaattttcaaattgctgtacttctaagcagaagttctttccatatgtcttgtcccaaac-----------------tatgttctttgagattt-tgaaaggattactcataATT--CTACTATTCCAGCAATAATGACTATATTAACATAAT----------------------------------------------------------------------TAATATCCTTCCCTACATCATAAGTGGTGCTCACAGATTCTCTTGGCCCTCATATTCCCTGACTAGAAAATCTA-----GTCTTCCCTGATATGAATAAT---------TTttatctgaatattttctaggccccttata-ttttcctt--gatgtggcaactagaactat----gtgctgcattccaggtgtg----gcta--cccactgtttcatatgtaatagatgcattttactttccatatgataatcagcattAC-AAAAAACTAATTCTCAG---AATGACTTACAACAAAATTCTAGGTCCATTTTGC--AAATCACACTGATAACTGAGAAATATCAT----TAT--------AGTTTCGCTTATTTTGAACCAATACTCAGTCTTCATGATAAACACACAGGAAAGCTGTGAGTCTGTCAACAAGGGCTT---GTCTG------CCCCCTGGATTCTTCAAGCAGCCCTATGAACTCCAAGA---------------TATGAGAAAC----------ACTTAAGTCTGGCAATGACATCATTTTTCTTCAGTTTTAAAACAAAAAAGGCTAGGTTACTGTG-ATTTTCCATAGCTTCCTTCATTCCTGCTTAT-TCAATCATTTCTTTAGTATTTACAATAGATCCAATATTCATTTTTTGTAGACTCACATTCTTT------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------TGAATCA----------------TGCAA---TCTGGCTTCTGCTGCTACACTAAAATATCATGCGCAAGGACAATCAGAACCGTAGAAGTCTTTTAGAAAGAGCCTCACAGTGCAATGCTTATACTGTG------------GCCCCTGTGTGTGCTGCCATACTCCTGAAGATCCATAACACAGCTACTCCTCTGGCCCCTGACA-TCAGGTC---A-----GCATT---CTG---CC------TTCGAATTCTTTGGCTT-------TTCCCTTTGCCCTTCGGTTTCATTCTGGTTAGGTT-TAGGCTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163438223 1171 + 180432695 AGAT-Actatgtttgtgtgtct-----gtgaggggtTGCCTTCTCTTCTCACCATCTTCATAAGTCAAGTAGCTATCTGCCAAATTTCCCCAATCTCCCTCAATCATCTGTGCTAGAGCTATTCCTTATAGAATTATTTGCCCTCTCTGGAGCACA-TTTATACTCTCAACCTGTGTCATCtttcaataaattttcaaattgCTGTACTTCTAAGCAGAAGTTCTTTTCATATGTCTTATCCCAAAC-----------------TATGTTCTTAGAGATTT-TGAAAGGATTACTCATAATT--CTACTATTCCAGCAATAATGACTATATTAACATAAT----------------------------------------------------------------------TAATATCCTTCCCTACATCATAAGTGGTGCTCACAGATTCTCTTGGCCCTCATATTTCCTGACTAGAAAATCTA-----GTCTTCCCtgatatgaataat---------ttttatctgaatattttcTAGGCCCCTTATA-TTTTCCTT--GATGTGGCAACTAGAACTAT----GTGCTGCATTCCAGGTGTG----GCTA--CCCACTGTTTCATATGTAATAGATGCATTTTACTTTCCATATGATAATGAGCATTAC-AAAAAACTAATTCTCAG---AATGACTTACAACAAAATTCTAGGTCCATTTTGC--AAATCGCACTGATAACTGAGAAATATCAT----TAT--------AGTTTCGCTTATTTTGAACCAATACTCAGTCTTCATGACAAACACACAGGAAAGCTGCGAGTCTGTCAACAAGGGCTT---GTCTG------CCCCCTGGATTCTTCAAGCAGCCCTATGAACTCCAAGA---------------TATGAGAAAC----------ACTTAACTCTGGCAATGacatcatttttcttcagttttaaaacaaaaaaggc-aggttACTGTG-ATTTTCCATAGCTTCCTTCATTCCTGCTTAT-TCAATCATTTCTTTAGTATTTACAATAGATCCAATATTCATTTTTTGTAGACTCACATTCTTT------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------TGAATCA----------------TGCAA---TCTGGCTTCTGCTGCTACACTAAAATATCATGCGCAGAGACGATCAGAACTGTAGAAGTCTTTTAGAAAGAGCCTCACAGTGCAATGCTTATACTGTG------------GCCCCTGTGTGTGCTGCCATACTCCTGAAGATCCATAACACAGCTACTCCTCTGGCCCCTGACA-TCAGGTC---A-----GCATT---CTG---CC------TTCGAATTCTTCGGCTT-------TTCCCTTTGCCCTTTGGTTTCATTCTGGTTAGGTT-TAGGCTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110466999 1164 + 127223203 AGAT-ACTATGTTTGTGTGTTT-----GTGAGAGGTTGC-----CTTCTCACCATCTTCATAAGTCAAGTAGCTATCTGCCAAATTTCCccaatctccctcaatcatctgtgctagagctattccttatagaattatttgccctctctggagcaca-ttgatactctcaacctgtgtcatctttcaataaattttcaaattgctgtacttctaagcagaagttcttttcatatgtcttatcccaaac-----------------tatgttctttgagattt-tgaaaggattactcataatt--ctactattccagCAATAATGACTATATTAACATAAT----------------------------------------------------------------------TAATATCCTTCCCTACATCATAAGTGGTGCTCACAGATTCTCTTGGCCCTCATATTTCCTGACTAGAAAATCTA-----GTCTTCCCTGATATGAATAAT---------TTttatctgaatattttctaggccccttata-ttttcctt--gatgtggcaactagaactat----gtgctgcattccaggtgtg----gcta--cccactgtttcatatgtaatagatgcattttactttccatatgataatcagcattAC-AAAAAACTAATTCTCAG---AATGACTTACAACAAAATTCTAGGTCCATTTTGC--AAATCGCACTGATAACTGAGAAATATCAT----TAT--------AGTTTCGCTTATTTTGAACCAATACTCAGTCTTCATGATAAACACACAGGAAAGCTGTGAGTCTGTCAACAAGGGCTT---GTCTG------CCCCCTGGATTCTTCAAGCAGCCCTATGAACTCCAAGA---------------TATGAGAAAC----------ACTTAACTCTGGCAATGACATCATTTTTCTTCAGTTTTAAAACAAAAAAGGC-AGGTTACTGTG-ATTTTCCATAGCTTCCTTCATTCCTGCTTAT-TCAATCATTTCTTTAGTATTTACAATAGATCCAATATTCATTTTTTGTAGACTCACATTCTTT------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------TGAATCA----------------TGCAA---TCTGGCTTCTGCTGCTACACTAAAATATCATGCGCAGAGACGATCAGAACTGTAGAAGTCTTTTAGAAAGAGCCTCACAGTGCAATGCTTATACTGTG------------GCCCCTG-GTGTGCTGCCATACTCCTGAAGATCCATAACACAGCTACTCCTCTGGCCCCTGACA-TCAGGTC---A-----GCATT---CTG---CC------TTCGAA-TCTTTGGCTT-------TTCCCTTTGCCCTTTGGTTTCATTCTGGTTAGGTT-TAGGCTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23810970 1179 - 128169293 AGATAACTATGTTTGTGTTTTT-----GTGAGAGGTTGCCTTCTCGTCTCACCATCTTCATAAGTTAAGTAGCAATCCCCCAAATTTCCCTTACCTCCCTCAATCATCCATGTTAGAGCTATTCCATATGGAATTATTTGCCCTCTCTGAAGCACA-TTTATACCCTCAACCTGTGTCATCTTTCAATAAATTTTCAAATTGCTCTACTTCCAAGCCAAACTTCTTTTTATATGTCTTATCCTCAAC-----------------TATGTTCTTTGAGATTT-TGAAAGGATTACTCATAATC--CTACTATACTGGCAATAACAACTATATTAACATAAT----------------------------------------------------------------------TAATATCCTTCCCTACATCCTAAGTGGAGCTCACAAATTCTCTTGGCCCTCATATTTCCAGACTAGAAATTCTGATATTGTCTTCCCTGATATGAATACT---------TTTTATCTGAATATTTTCTTGGCCCCTTATA-TTTTTCTTGAGATGTAACAGCTGGAACTATCTACATACAGCATTCCAGGTGTG----GCTGC-CCCACTGATTCAAATGTGATAGATGCATTTTACTTTCCATATGATAATCAGCCCTAC-AAAAAATGAATTATCAG---AATGACTTATTACAAAATTCTAGGTTCATTTCCC--AAATCACATTGATAACTGAGAATTATCAT----TAT--------CGTTTCACTTATTTTGAACCAATACACAGTCTTCATGATAAACCCGCAGGAAAGCTGTGAGTCTGTCATCGAGGGCTT---GTCTG------CCCCCTGGATTCCTCAAGCAGCCCTATGAACTCCAAAA---------------CATGTGAAAC----------ACTTGACTCTGGCAATGACATCA-TTTTCTTCACTT------AAAAAAAGGCTAGGTTACTGTGTATACTCCACAGCTTCCTTCATTCCTGCTTGT-TCAATCACTTATTTAGTATTTACAGTAGAT-CAATACTAATTTTTTGTAGACTCACATTCTCT------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------TGAATCA----------------TGCAA---TCTGGCTTCTACTTCTACACAAAAATGTCATGGGCAGAGATGATCAGAACTGTAGAAGTCTTTTAGGAAGA-CCTCACAGGGCAATGCTCATACTGTG------------GCCCCTGTGTGTGCTGCCATACTCCTGAAGATCCATAACACAGCTACTCTCCTGGCCCCTGACA-TCAGGTC---A-----GCATTCTACTG---CC------TCAGAATTCTTTGGCTT-------TTCCCTT-ACCCTTTGGTTTCATTCCAGTTAGGTT-TAGGCCG
i calJac3.chr8             C 0 I 318
s mm10.chr6                 40447084 1045 + 149736546 AAAT-AATATAACTCCATCTTG-----ATAGGAGGCTGC-----CTTCTCACTATCTTCAGAAGTCAAGGAGCTGCC----------CCCACATCTCCCTTAGTCATCCAT-CCAGAGTTTTCACT-----AGGTATT----------------CA-TCTACACTC--------------CTTTCTACTGCTTTTTAGTCTGCTGTACTTCCAAGCAAAGCTTTTTTTCAT-----------------------------------------------------------------------------------------AATGG--ATATTAA----------------------------------------------------------------------------CAGTATCTTCCACTATATCACAAGAGGAGATTACAAATCCCATTGGCTGACATCTCCCATGATATGAA-----------ATTTCCCATG----------T---------TTTTATCTGAAAATTTCATAGGCTCTTTTTATTTTTTCTTAAAATATGGCAA-GAGAATTCT----TTGCAGCACTACAGATATGCAGAACTACACCCTCCAGGTCATATGTGAAGGATTCATTTTACTT--------------GGCATCAG-AAAACAACATTTCTTGATCTAATGGTCGAGTGT--AACCCTGAGTTTTTTTTCCCAAAATCATACTGGTAATGGAGACACATCAT----TATGTACTATAGTTTTTGCTTATTTTAAAACCACAGTCCTTTTCCATGATAAACTCACCAGAAAACAATAACTTTGTCACTGTGGGTTTTGAACACA------GTCCTGGGATTATTCA-------CTCTGAACTCTAAGAGAAATGCCAGACCCCTATATAAAGT----------CCTTGACTATGCTAATAGCATA--TTTTCTTCACCT-------ATAAAACGT-ATGCAAATTTGTATGCTCCACAGCATTGTTCATTTCTGCTCATCTCGATCATCTAGTAA------ACATTAATTCTAAGAGTC----TTTGAAGACTCACGTTACTT------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------TGAGTCA----------------GATGATGGTTTGGCTTCTGATTTTACAGTGAAAAGTCATAGGCAGAGTCCATCAAAATGGTAGGATTCCTTAATAGCAA-CCCCA-AGTGCAATGAACATACTGTAAAGTTCCATCTTGACCATATGTGTGCTACTGTGTGCTTGCAGAACTACAGCATGGGTGCTTCTCCAGATCCTGACACTTAGGTCTAAG-----GGATC---CTGATCTT------TCAGAATACTTTGTCTT-------TGAACTT-GGCATTTGGTTAAACTCTGGTTAAGTC-TAGATTC
i mm10.chr6                I 72 C 0
s canFam3.chr16             52145508 1402 -  59632846 agat-actatgatGTTGTATCTTGAAGGTAGGAGGTTGCCTTCTCCTCTTGCCATCTTCAGAAGCGAGGGAGCTATTCCGTAATCTTCCCT----TCCCTCTATCATCTGTAACAGAACTGTTACTTACAGAATTAGCTACACTCCCTGGAACATA-TTTATACTCTAAACCTG-GACATCTTTCCAGAAATTTTCAATCTGCTTTACTTTTAGGCAGAACTTCCTTTCATAAACCTTGTTCCAAACAAGAACTTTCATAAATACAAGTTCTTTTGGATTTCCAAAAAGATTACTTACAATTACTTACCATTATGGCAATAAAATCCAAATTAGTATAAT----------------------------------------------------------------------TAATATATTTCTCTGTATCCTAAGTGGAACTCACAAAATCTATCTGCCTTCATATTTCCAGACTAGGAATTCTGGTCTTGTCTGCCCTGATGTGAATGCTTTTCCTTCCTTTTATCTGAAACATTTCTAGGCCTTTT-TG-TTGTCCTTAAAGTGTGGCAACCAGAG---T----GTGCAGCATTCCGGGTGTA----GATGC-CCCACTGTTTCAGATGTGACAGACACATTTTAATTCCCATATAATCATCAGCATCACAAAAAAACTGTTTCTCGG-GGAATGGTTTAGTGT--AATTCTAAGTTCATTTCCT--CAGTCACACAGACAACTGAGAAATATTATATGGTAT--------AGTTGTACTTA-CTTGAGCAAACACTGAGCCCT-ATACTACACTTACAGGAAAATTGTGAGTTTATCTTT--GGCTTT---GTCTGACAATAGCCCCAGGGTTGTTCA-----TCCTGTAAACTCTAAGA---------------CCTGTAAAACCTTTGTAAAAACTGGACTCTAGCAATGAC-----TTTTCTTCACTT-AAAAAAAAAAAAGGTTAGGTTACTAGTTATACTCTATAGTTTCCTTCATTTCTGCTTTT----ATCATTT----AGGGTTTATAAT---TTCAATATTCATTCCTTGTATCTTCACATTCtttttttttttttttttttaattcataagagacacagacagaggcagagagagaagcagactacatgcagggagcccgacgtgggactcgatcccaggtctccaggatcacaccttgggctgaaggcaggtgctaaaccgctgagccacccaggatgcccTTATCTTCATTCTTGAATCACATTTTTATATCATGTCATAG---TCTAGCTTCTGCTTCTATGCTGAAAAGCCATGGGCAGATATTATCA-AATAGTGGAATTCTTTTAGAAAGAGCCTCACAGTACAATGATTATACTATGTGGTTATATCATGGCCCTGCGTCTACTGCTGTAC---------ACCATAACACAGCT----CTCTGGCCCCTGAC--TTAGGTT---ATAATGGCATT---CTG---CTGTCTCATCAGAATTCTTTGTCTTCTACCTATCCCCTCTGTCCTTTGGTTTAGTTCTGGTTAGGTTGTAGGCAT
i canFam3.chr16            C 0 C 0

a score=384677.000000
s hg38.chr7_GL383534v2_alt     86055  96 +    119183 ATGTT----------CTCTTCTTGTATGCCACTTGGAGTGG-TAAGTCCTGCACATTGACCT-ATTTGTTGGTA-GCTGGTTGTAGCCACTGCAAAGATCTG-AATCTTA
s panTro4.chr7             143185954  96 + 161824586 ATGTT----------CTCTTCTTGTATGCCACTTGGAGTGG-TAAGTCCTGCACATTTACCT-ATTTGTTGGTA-GCTGGTTGTAGCCACTGCAAAGATCTG-AATCTTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139008069  96 + 157549271 ATGTT----------CTCTTCTTGTATGCCACTTGGAGTGG-TAAGTCCTGCACATTTGCCT-ATTTGTTGGTA-GCTGGTTGTAGCCACTGCAAAGATCTG-AATCTTA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93129377  96 + 110113093 ATGTT----------CTCTTCTTGTATCCCACTTGGAGTGG-TAAGTCCTGCACATTTGCCT-ATTTGTTGGTA-GCTGGTTGTAGCCACTGCAAATATCTG-AATCTTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181023069  96 + 198365852 ATGTT----------CTCTTCTTGTATCCCGCTTGGAGTGG-TAAGTCCTGCACATTTGCCT-ATTTATTGGTA-GCTGGTTGTAGCCACTGCAAAGATCTG-AATCTTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174771173  96 + 192294377 ATGTT----------CTCTTCTTGTATCCCGCTTGGAGTGG-TAAGTCCTGCACATTTGCCT-ATTTATTGGTA-GCTGGTTGTAGCCACTGCAAAGATCTG-AATCTTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163439394  96 + 180432695 ATGTT----------CTCTTCTTGTATCCCACTTGGAGTGG-TAAGTCCTGCACCTTTGCCT-ATTTATTGGTA-GCTGGTTGTAGCCACTGCAAAGATCTG-AATCTTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110468163  97 + 127223203 ATGTT----------CTCTTCTTGTATCCCACTTGGAGTGGTTAAGTCCTGCACATTTGCCT-ATTTATTGGTA-GCTGGTTGTAGCCACTGCAAAGATCTG-AATCTTA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23812467  96 - 128169293 ATGTT----------CTCTTACTGTACCCCACTGGGAGTGG-TAAATCCTACACATTTGCCT-ATTTGTTGGTA-GCTGGTTGTAGCCACTGCAAAGATCTG-AATCTTA
i calJac3.chr8             I 318 C 0
s mm10.chr6                 40448129 106 + 149736546 -AGTTGGATTAGCAAGTCTTCATATATATATCATATATTAG-CAAGTCTT-CATATATATATCATATATTGGTA-GCTGGTTATAGCCACATCAAAGCCCTGAAATCTTA
i mm10.chr6                C 0 I 754
s canFam3.chr16             52146910  97 -  59632846 ATGTT----------CTCTTACTGTACCCCACTTGGAGTGG-TAAGTCCTGTACATTTTCCT-ACTTATTGGTATGCTGGTTATAGCCACTGCAAAGCCCTG-AATCTTA
i canFam3.chr16            C 0 C 0

a score=26190.000000
s hg38.chr7_GL383534v2_alt     86151 6 +    119183 AGGGCT
s panTro4.chr7             143186050 6 + 161824586 AGGGCT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139008165 6 + 157549271 AGGGCT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93129473 6 + 110113093 AGGGCT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181023165 6 + 198365852 AGGGCT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174771269 6 + 192294377 AGGGCT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163439490 6 + 180432695 AGGGCT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110468260 6 + 127223203 AGGGCT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23812563 6 - 128169293 AGGGCT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52147007 6 -  59632846 AGGGCT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40448235 754 + 149736546 I

a score=3099313.000000
s hg38.chr7_GL383534v2_alt     86157 803 +    119183 TAGAGTACTAATTTTCAATCTCATTACCGCACTTCATGAAGCACTTCTCAGTTAGTGCTTTATTTTAAGTGAAATTAAAAACT---TTTTT--CATGTTTAAATAGTCTATGAAATCTTTTCC-TTACAAGGTGATTATTTCTGAAACACTGATGAACTGCTGAATAATGAACTATATATTCCTTAAGATTTAGAAttca-cttctgtaccacttggcatctaacccagcatctgctacatagtaggcaccaaacaaatatttggatgaataattg-aGGGGAAGTTAAAGCATAAGCTCTGAGAA------------------TAT------------------AGTCATTTTTATTTGTCTAAACTTAATGTCCATGTCTTTAAAAACTGGAGATAGGACTACAACTGG---TTTTCATAGCTAGCTAACAGAATTGCCCAGGGGAAGGGGTTggagcttgactaaagtacagattcctgtgttgacttcatgaatcagaatatctagaggtagagactgggattctatagtttt--cataagAGGAGCAGTTACAATGCAACCAG-TTCACATGgaaccagataatttctaaggccccttcagcaaaagcattcttagattcAAATATTAACTAGCTAACTGATAAGGAA---------------------TGTC--TTTACT------AATGCTATTATGACTTGCC--TTTTGTCATCCTCATTCAGACCATGCTGAGCCGGTTGGTGATTTCTCCAACAGGGAAGCTTCCTTCCAGAGGCCCTAAGCATTTGAAGCTCACACCTGCTCCCCTCAAGGATGAGATGACCTCATTGGCTCTGGTCAATATTAATCCCTTCACTCCAGAGTCCTATAAAAA
s panTro4.chr7             143186056 803 + 161824586 TAGAGTACTAATTTTCAATCTCATTACTGCACTTCATGAAGCACTTCTCAGTTAGTGCTTTATTTTAAGTGAAATTAAAAACT---TTTTT--CATGTTTAAATAGTCTATGAAATCTTTTCC-TTACAAGGTGATTATTTCTGAAACACTGATGAACTGCTGAATAATGAACTATATATTCCTTAAGATTTAGAAttca-cttctgtaccacttggcatctaacccagcatctgctacatagtaggcaccaaacaaatatttggatgaataattg-aGGGGAAGTTAAAGCATAAGCTCTGAGAA------------------TAT------------------AGTCATTTTTATTTGTCTAAACTTAATGTCCATGTCTTTAAAAACTGGAGATAGGACAACAACTGG---TTTTCATAGCTAGCTAACAGAATTGCCCAGGGGAAGGGGTTggagcttgactaaagtacagattcctgtgctgacttcatgaatcagaatatctagaggtagagactgggattctatagtttt--cataagAGGAGCAGTTACAATGCAACCAG-TTCACATGgaaccagataatctctaaggccccttcagcaaaagcattcttagattcAAATATTAACTAGCTAACTGATAAGGAA---------------------TGTC--TTTACT------AATGCTATTATGACTTGCC--TTTTGTCATCCTCATTCAGACCATGCTGAGCCGGTTGGTGATTTCTCCAACAGGGAAGCTTCCTTCCAGAGGCCCTAAGCATTTGAAGCTCACACCTGCTCCCCTCAAGGATGAGATGACCTCATTGGCTCTGGTCAATATTAATCCCTTCACTCCAGAGTCCTATAAAAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139008171 806 + 157549271 TAGAGTACTAATTTTCAATCTCATTACCCCACTTCATGAAGCACTTCTCAGTTAGTGCTTTATTTTAAGTGAAATTTAAAACT---TTTTT--CATGTTTAAATAGTCTATGAAATCTTTTCC-TTACAAGGTGATTATTTCTGAAACACTGATGAACTGCTGAATAATGAACTATATATTCCTTAAGATTTAGAAttca-cttctgtaccacttggcatctaacccagcatctgctacatagtaggcaccaaacaaatatttggatgaataattg-aGGGGAAGTTAAAGCATAAGCTCTGAGAA------------------TAT----------------AGAGTCATTTTTATTTGTCTAAACTTAATGTCCATGTCTTTAAAAACTGGAGATAGGACTACAACTGG---TTTTCATAGCCAGCTAACAGAATTGCCCAGGGGAAGGGGTTGGAGCTTGACTAAAGTACAGATTCCTGTGTTGACTTCATGAATCATAATATCTAGAGGTAGAGACTGGGATTCTATAGTTTT--CATAAGAGGAGCAGTTACAATGCAACCAGTTTCGCATGgaaccagataatctctaaggccccttcagcaaaagcattcttagattcGAATATTAACTGGCTAACTGATAAGGAA---------------------TGTC--TTTACT------AATGCTATTATGACTTGCC--TTTTGTCATCCTCATTCAGAGCATGCTGAGCCGGTTGGCGATTTCTCCAACAGGGAAGCTTCCTTCCAGAGGCCCTAAGCATTTGAAGCTCACACCTGCACCCCTCAAGGATGAGATGACCTCATTGGCTCTGGTCAATATTAATCCCTTCACTCCAGAGTCCTATAAAAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93129479 806 + 110113093 TAGAGTACTAATTTTCAATCTCATTACCCCACTTCATGAAGCACTTCTCAGTTAATGCTGTATTTTAAGTGAAATTAAAAACT---TTTTT--CATGTTTAAATAGTCTATGAAATCTTTTCCTTTACAAGGTGATTATTTCTGAAACACTGATGGACTGCTGAATAATGAACTATATATTCCTTAAGATTTAGAAttca-cttctgtaccacttggcatctaacccagcatctgctacatagtaggcaccaaacaaatatttggatgaataattg-aGGGGAAGTTAAAGCATAAGCTCTGAGTA------------------TAT----------------AGAGTCATTTTTATTTGTCTAAACTTAATGTCCTTGTCTTTAAAAACTGGAGATAGGACTACAACTGG---TTTTCATAGCCAGCTAACAGACTTGCCCAGGGGAAGGGGTTggagcttgactaaagtacagattcctgtgttgacttcatgaatcagaatatctagaggtagagactgggattctatagtttt--cataagAGGAGCAGTTACAGTGCAACCAG-TTCACATGGAACCAGATAATCTCTAAGGCCCCTTCAGCAAAAGCATTCTTAGACTCAAATATTAACTAGCTAACTGATAAGGAA---------------------TGTC--TTCACT------AATGCTATTATGACTTGCC--TTTTGTCATCCTCATTCAGAGCATGCTGAGCCGGTTGGCGATTTCTCCAACAGGGAAGCTTCCTTCCAGAGGCCCTAAGCATTTGAAGCTCACACCTGCTCCCCTCAAGGATGAGATGACCTCATTGGCTCTGGTCAATATTAATCCCTTCACTCCAGAGTCCTATAAAAA
i nomLeu3.chr13            C 0 M 196
s rheMac3.chr3             181023171 803 + 198365852 TAGAGTACTAATTTTCAATCTAATTACCCCACTTCATGAAGCACTCCTCAGTTAATGCTATATTTTAAGTGAAATTTAAAACT---TTTTTT-CATGTTTAAATAGTCTATGAAATCTTTTTC-TTATAAGGTGATTATTTCTGAAACACTGATGAACTGCTGAATAATGAACTATATATTCCTTAAGATTTAGAAttca-cttctgtaccacttggcatctaacccagcatctgctacgtagtaggcaccaaacaaatatctggatgaataattg-aGAGGAAGTTAAAGCATAAGCTGTGATAA------------------TAT------------------AGTCATTTTTATTTGTCTAAACTTAATGTCTTTGTCTTTAAAAACTGGAGATAGGACTACAACTGG---TTTTCATAGCCAGCTGACAGAATTGCCCAGGGGAA-GGGTTAGAGTTTGACTAAAGTATAGACTCCTGGGTTGACTTCATGAATCAGAATATCTAGAGGCAGAGACTGGGATTCTGTAGTTTT--CATAAGAAGAGCAGTTACAATGCAACTAG-TTCGCATGgaaccagataatctctaaggccccttcagcaaaagcattcttcgattcAAATATTAACTAGCTAACTGATGCGGAA---------------------TGTC--TTTACT------AACACTATTATGACTTGTC--TTTTGTCATCCTCATTCAGAGCATGCTGAGCCGGTTGGCGATTTCTCCAACAGGGAAGCTTCCCTCCAGGGGCCCTAAGCATTTGAAGCTCACACCTGCTCCCCTGAAGGATGAGATGACCTCATTGGCTCTGGTCAATATTAATCCCTTCACTCCAGAGTCCTATAGAAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174771275 803 + 192294377 TAGAGTACTAATTTTCAATCTAATTACCCCACTTCATGAAGCACTCCTCAGTTAATGCTATATTTTAAGTGAAATTTAAAACT---TTTTTT-CATGTTTAAATAGTCTATGAAATCTTTTTC-TTATAAGGTGATTATTTCTGAAACACTGATGAACTGCTGAATAATGAACTATATGTTCCTTAAGATTTAGAAttca-cttctgtaccacttggcatctaacccagcatctgctacgtagtaggcaccaaacaaatatttggatgaataattg-aGAGGAAGTTAAAGCATAAGCTGTGAGAA------------------TAT------------------AGTCATTTTTATTTGTCTAAACTTAATGTCTTTGTCTTTAAAAACTGGAGATAGGACTACAACTGG---TTTTCATAGCCAGCTGACAGAATTGCCCAGGGGAA-GGGTTAGAGTTTGACTAAAGTATAGACTTCTGTGTTGACTTCATGAATCAGAATATCTAGAGGCAGAGACTGGGATTCTGTAGTTTT--CATAAGAAGAGCAGTTACAATGCAACTAG-TTCGCATGgaaccagataatctctaaggccccttcagcaaaagcattcttcgattcAAATATTAACTAGCTAACTGATACGGAA---------------------TGTC--TTTACT------AACGCTATTATGACTTGTC--TTTTGTCATCCTCATTCAGAGCATGCTGAGCCGGTTGGCGATTTCTCCAACAGGGAAGCTTCCCTCCAGGGGCCCTAAGCATTTGAAGCTCACACCTGCTCCCCTGAAGGATGAGATGACCTCATTGGCTCTGGTCAATATTAATCCCTTCACTCCAGAGTCCTATAGAAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163439496 806 + 180432695 TAGAGTACTAATTTTCAATCTAATTACCCCACTTCATGAAGCACTCCTCAGTTAATgctatattttaagtgaaatttaaaact---ttttttccatGTTTAAATAGTCTATGAAATCTTTTTC-TTATAAGATGATTATTTCTGAAACACTGATGAACTGCTGAATAATGAACTATATATTCCTTAAGATTTAGAATTCA-CTTCTGTACCACTTGGCATCTAACCCAGCATCTGCTACGTAGTAGGCACCAAACAAATATTTGGATGAATAATTG-AGAGGAAGTTAAAGCATAAGCTCTGAGAA------------------TAT----------------AgagtcatttttatttgtctaaacttaatgtctttgtctttaaaaactgGAGATAGGACTACAACTGG---TTTTCATAGCCAGCTAACAGAATTGCCCAGGGGAA-GGGTTAGAGTTTGACTAAAGTACAGACTCCTGTGTTGACTTCATGAATCAGAATATCTAGAGGCAGAGACTGGGATTCTGTAGTTTT--CATAAGAGGAGCAGTTACAATGCAACTAG-TTCGCATGGAACCAGATAATCTCTAAGGCCCCTTCAGCAAAAGCATTCTTTGATTCAGATATTAACTAGCTAACTGATACGGAA---------------------TGTC--TTTACT------AATGTTATTATGGCTTGTC--TTTTGTCATCCTCATTCAGAGCATGCTGAGCCGGTTGGCGATTTCTCCAACAGGGAAGCTTCCCTCCAGGGGCCCTAAGCATTTGAAGCTCACACCTGCTCCCCTGAAGGATGAGATGACCTCATTGGCTCTGGTCAATATTAATCCCTTCACTCCAGAGTCCTATAGAAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110468266 805 + 127223203 TAGAGTACTAATTTTCAATCTAATTACCCCACTTCGTGAAGCACTCCTCAGTTAATGCTATATTTTAAGTGAAATTTAAAACT---TTTTTT-CATGTTTAAATAGTCTATGAAATCTTTTTC-TTATAAGGTGATTATTTCTGAAACACTGATGAACTGCTGAATAATGAACTATATATTCCTTAAGATTTAGAAttca-cttctgtaccacttggcatctaacccagcatctgctacgtagtaggcaccaaacaaatatttggatgaataattg-aGAGGAAGTTAAAGCATAAGCTCTGAGAA------------------TAT----------------AGAGTCATTTTTATTTGTCTAAACTTAATGTCTTTGTCTTTAAAAACTGGAGATAGGACTACAACTGG---TTTTCATAGCCAGCTAACAGAATTGCCCAGGGGAA-GGGTTAGAGTTTGACTAAAGTACAGACTCCTGTGTTGACTTTATGAATCAGAATATCTAGAGGCAGAGACTGGGATTCTGTAGTTTT--CATAAGAGGAGCAGTTACAATGCAACTAG-TTCGCATGgaaccagataatctctaaggccccttcagcaaaagcattcttcgattcAAATATTAACTAGCTAACTGATACGGGA---------------------TGTC--TTTACT------AATGTTATTATGGCTTGTC--TTTTGTCATCCTCATTCAGAGCATGCTGAGCCGGTTGGCGATTTCTCCAACAGGGAAGCTTCCCTCCAGGGGCCCTAAGCATTTGAAGCTCACACCTGCTCCCCTGAAGGATGAGATGACCTCATTGGCTCTGGTCAATATTAATCCCTTCACTCCAGAGTCCTATAGAAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23812569 797 - 128169293 TAGAGTACTACTTTTCAATCCGTTCGCCCCACTTCATGAAGCA-TTCTCATTTAACGCTATATCTTAAGTAAAATTAAAAACT---TTTTT--CATGTTTAAATAGTCTATGAAATCTTTTCC-TTACAAGGTGATTATTTTTGAAACACTGAT-AACTGCTGAATAATGGACTATATATTCCTTAAGATTTAGAAttca-cttctgtaccacttggcatctaacccagcatctgctacgtagtaggcaccaaacaaatatttggatgaatAGTTG-AGGGGAAGCTGGAGCATAAACTCTGAGAA------------------TAT----------------TGGGTCATTTTTGTTTGTCTAAACTTAATGTCCTTGTCTTTAAAAACTGGAGATAGGGCTACAATTCG---TTTTCATAACCAG----GGGAATTGCCCAAGGGAAAGGGTTGGAGC-TGATTGAAATACAGGTTCCTGTGCTGACTTCATGAATCAGAATGTCTAGAGGTAGAGACGAGGATTCCATAGTTTT--CATGAGAGGAAGAGTTACAGTGCAACTAG-TTTGCATGGAAACAGATAATCTCTAAGGCCCCTTCAGCAAAAGCATTCTTAGGTTCAAATATTAAC-AACTAACTTATAAGGAA---------------------TTTC--TTTACT------AATGATGTTATGACCTGTT--TTTTGTCATCCTCATTCAGAGCATGCTGAGTCGGTTGGCGATTTCTCCAACAGGGAAGCTTCTCTCCAGAGGCCCCAAGCATTTGAAGCTCACACCTGCTCCCCTCAGGGATGAGATGACCTCATTTGCTCTGGTCAATATTAATCCCTTCACTCCAGAGTCCTATAGAAA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40448989 785 + 149736546 taGACTATTATTTTTAAATCT--TTATTTCACTTCATGGGGTTCTTCTCATTTTATGTGGTGTTTTGAGTAAATTTGAGAGCTCTACTTTT--CATGTTTAGAAAGTCTATGAAATATAGCTC-TTACAAAGTTATTAATTC--AAACAC--ATAATGCACTGATTAACAAATGGTGTGCTCATTAAAAGCCAGACTGTATCCATTGTACCCATCAGTATCTAATCAAGCACCTGTCATTACATAGGTA-CAAACAAACACTGGGATTACTA-TTG-AGACAGAG--AGAGAATA---TCTAAGAACAGGAGGATGGGGGCATCTAC----------------AGAATCATTTTTGTCCACCTAGATGCAATGTCCTCACTTTTGAAAGC------TAGGACTTAGAATTG---GTTTCACAATTGG----GAAAACTGTTTGGAAGAA-GGGGTGGAGCTTAACAAAAGCACCGATTCTTGTGTGGA-TTCAAGAAT-----------------GAGTCTAGAATTCTGTATGCGTAAAATAAGAGCACCAGGTACTGTGCAACTAG-TTCTCATTGAGCCACACAGTCT----------TTTAGCAATGGCATCTGTTGGACCACATATGAACTAGCTAGTTGATGTGAAA---------------------CTTCCTTTTACTTCTTAAAGCCCTATTCTGACTTGCT--GTTTGTCGTCCTCACCTAGAATTCGCTGGGTCAGCCAGAGATTTCTCTGCTAGAGAAGCTCTCCTCCCGAAGCTCTAGACATATGAGGCTCACACCTGCTTCCCTTATGGATGAGAAGACCTCTTTGTCTCTGGTCAATATCAACCCATTCACTCCGGAGACCTACAGAAA
i mm10.chr6                I 754 C 0
s canFam3.chr16             52147013 833 -  59632846 CAGAGGATTATTTTTCAATTTCCTTACTCTACTTTATGGAGCTCTTTTCATTTGGTGCTGTATTTTAAGTGGAACTGGAAACT---TCTTTT-CATGTTTAGATAG-----ATAGTCTTTCTT-GTACAAAGTGATTATTTCTGAAAGGTTGATGAACTGTTGActaatggactgtgcatcccttaagagttggaattca-cctctgtccacctcagcatccagcccggcatctgctacttagtaggcaccaaacaaatatttgggtgaatacttgaaGGGGGAGTCAAAGTACATAC--TGAGAC------------------TATAAGGACCAGGTCTTCTAGAGTCCTTTTCATTTGTCTAAGCTGGA-GTATAGTCTTTAAAAAGCCAGAGGTAGAACTAGAGTTGACATTTTTCATAGCTGGCCT-CAAAATTGCCCAGGGGAAGGAGGTGGAGCTTAACCAAAGTACAGATTCCTGTGTTGA-TCCTCTAATCAGAATATCTAGAGG--AAGACTAGGAATCTGTATTTTT--CATAAGAGGACCAGTTATAATGCAACTAG-TTTGTgctgaaccagataacctctaattccttttcagcaataacattctttggttcAAATATTAACTAGC----TGATATGGAACTCtttttttttttttttttttttt--tttACT------AACCTCATTCTATTTTCCCTTTTTTGTCATTCTCATTCAGAGTCTGCTAAGCCAGTCAGTGATTTCTTCAACAGAGAAGCTCCCCTCCAGAGGCTCTAAGCATTTGAGGTTCACACCTGTTCCCTTTGTGGATGAGATGACCTCGTCAGCTCTGGTCAATATTAATCCCTTTACCCCAGAGTCCTATAGAAA
i canFam3.chr16            C 0 C 0

a score=1569466.000000
s hg38.chr7_GL383534v2_alt     86960 548 +    119183 ATTATTTCTTCAATCTGGTGGCAAGAGGAAAATAAGAGGAGATCTGTAAGTGCTCTATTACTTATGACTTTTGAGAACTGACCCTACTACAGTCAAGTAGTAAGAAGTGAGTGTTAAAGTAAGATTAGGAACGAGAACTCTATTTGAATGAAATGTAT---ATGCTTACATATTCTCCCCTTCCTAGATATCAATGCTGGTT-TTACCTGCTTTATCACAGAGATTCCAACATCTTTCCATTCTGATATGTACTG-TAGATGCTTTCTCTAT-AAAAGGATAAGACAGAATAAGCAATAGATCTCTGGCTTCTATTAGGAAGTTGAGTGGGCTATGGAATTGCATTCAAGGGGTCCCCTCTGGTTAATATGAGGCTGGC-----------------------------------------AGTTGGGGAACGTGT-----AGCTCAAACTTCAAAGAGTACGTTGCTGCTTTGAGTCT----TG--TGTGAC------TAGTGATGAAAGCTATAGAGCAAGGATTTGAACTTCTCTGTGGGTGATGGAAGATTGGCTGAAGCAA----AAA----AGCA-------TTGCTTTCAGAGCTGCTAAAGAATAGAAA-----------------------GCCAAACTGTA
s panTro4.chr7             143186859 548 + 161824586 ATTATTTCTTCAATCTGGTGGCAAGAGGAAAATAAGAGGAGATCTGTAAGTGCTCTATTACTTATGACTTTTGAGAACTGACCCTACTACAGTCAAGCAGTAAGAAGTGAGTGTTAAAGTAAGATTAGGAACGAGAATTCTATTTGAATGAAATGTAT---ATGCTTACATATTCTCCCCTCCCTAGATATCAATGCTGGTT-TTACCTGCTTTATCACAGAGATTCCAACATCTTTCCATTCTGATATGTACTG-TAGATGCTTTCTCTAT-AAAAGGATAAGACAGAATAAGCAATAGATCTCTGGCTTCTATTAGGAAGTTGAGTGGGCTATGGAATTGCATTCAAGGGGTCCCCTCTGGTTAATATGAGGCTGGC-----------------------------------------AGTTGGGGAATGTGT-----AGCTCAAACTTCAAAGAGTACGTTGCTGCTTTGAGTCT----TG--TGTGAC------TAGTGATGAAAGCTATAGAGCAAGGATTTGAACTTCTCTGTGGGTGATGGAAGATTGGCTGAAGCAA----AAA----AGCA-------TTGCTTTCAGAGCTGCTAAAGAATAGAAA-----------------------GCCAAACTGCA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139008977 521 + 157549271 ATTATTTCTTCAATCTGGTGGCAAGAGGAAAATGCGAGGAGATCTGTAAGTGCTCTACTACT-------------------------TACAGTCAAGCAGTAAGAAGTGAGTGTTAAAGTAAGATTAGGAACGAGAACTCTATTTGAATGAAATGTAT---GTGCTTACATATTCTCCCCTCCCTAGATATCAATGCTGGTT-TTACCTGCTTTATCAC--AGATTCCAACATGTTTCCATTCCGATGTGTACTG-TAGATGCTTTCTCTAT-AAAAGGATAAGACAGAATAAGCAATAGGTCTCTGGCTTCTATTAGGAAGTTGAGTGGGCTATGGAATTGCATTCAAGGGGTCCCCTCTGGTTAATATGAGGCTGGC-----------------------------------------AGTTGGGGAAGGTGT-----AGTTCAAACTTCAAAGAGTATGTTGCTGCTTTGAGTCT----TG--TGTGAC------TAGTGATGAAAGCTATAGAGCAAGGATTTGAACTTCTCTGCGGGTGATGGAAGATTGGCTGAAGCAA----AAA----AGCA-------TTGCTTTCAGAGCTGCTAAAGAATAGAAA-----------------------GCCAAACTGCA
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181023974 548 + 198365852 ATTATTCCTTCAATCTGGTGGCAAGAGGAAAATGCGAGGAGATCTGTAAGTGCTCTATTACTTATGACTTTTGAGAACTGACCCTACTACAGTCAAGCGGTAAGAAGTGAGTGTTAAAGTAAGATTAGGAATGAGAACTCTATCTGAATGAAATGTAT---ATGCTTACATATTCTCCCCTCCCTAGATATCATTGCTGGTT-TTACCTGCTTTATCCCAGAGATTCTAACATCTTTCCATTCTGACGTGTACTG-AAGATGCTTTCTCTAT-AAAAGAACAAGACAGAATAAGCAATAGATTTCTGGCTTCTATTAGGAAGTTGAGTGGGCTGTGGAATTGCCTTCAAGGGGCCCCCTCTGGTTAATATGAGGCTGGC-----------------------------------------AGTTGTGGAAGGTGT-----AGTTCAAACTTCAAAGAGCATGTTGCTGCTTTGAGTCT----TG--TGTGAC------TAGTGATGAAAGCTACAGACCAAGGATTTGAACTTCTCTGTGGGTGATCAAAGATCGGCTGAAGCAA----AAA----AGCA-------TTGCTTTCAGAGCTGCCAAAGAATAGAAA-----------------------GCCAAACTGCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174772078 548 + 192294377 ATTATTCCTTCAATCTGGTGGCAAGAGGAAAATGCGAGGAGATCTGTAAGTGCTCTATTACTTATGACTTTTGAGAACTGACCCTACTACAGTCAAGCGGTAAGAAGTGAGTGTTAAAGTAAGATTAGGAATGAGAACTCTATCTGAATGAAATGTAT---ATGCTTACATATTCTCCCCTCCCTAGATATCATTGCTGGTT-TTACCTGCTTTATCCCAGAGATTCTAACATCTTTCCATTCTGACGTGTACTG-AAGATGCTTTCTCTAT-AAAAGAACAAGACAGAATAAGCAATAGATTTCTGGCTTCTATTAGGAAGTTGAGTGGGCTGTGGAATTGCCTTCAAGGGGCCCCCTCTGGTTAATATGAGGCTGGC-----------------------------------------AGTTGTGGAAGGTGT-----AGTTCAAACTTCAAAGAGCATGTTGCTGCTTTGAGTCT----TG--TGTGAC------TAGTGATGAAAGCTACAGACCAAGGATTTGAACTTCTCTGTGGGTGATCAAAGATCGGCTGAAGCAA----AAA----AGCA-------TTGCTTTCAGAGCTGCCAAAGAATAGAAA-----------------------GCCAAACTGCA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163440302 548 + 180432695 ATTATTCCTTCAATCTGGTGGCAAGAGGAAAATGCGAGGAGATCTGTAAGTGCTCTATTACTTATGACTTTTGAGAACTGACCCTACTACAGTCAAGCGGTAAGAAGTGAGTGTTAAAGTAAGATTAGGAACGAGAACTCTATCTGAATGAAATGTAT---ATGCTTACATATTCTCCCCTCCCTAGATATCATTGCTGGTT-TTACCTGCTTTATCCCAGAGATTCTAACATCTTTCCATTCTGACGTGTAATG-AAGATGCTTTCTCTAT-AAAAGAACAAGACAGAATAAGCAATAGATTTCTGGCTTCTATTAGGAAGTTGAGTGGGCTGTGGAATTGCCTTCAAGGGGCCCCCTCTGGTTAATATGAGGCTGGC-----------------------------------------AGTTGTGGAAGGTGT-----AGTTCAAACGTCAAAGAGTATGTTGCTGCTTTGAGTCT----TG--TGTGAC------TAGTGATGAAAGCTATAGAGCAAGGATTTGAACTTCTCTGTGGGTGATCAAAGATTGGCTGAAGCAA----AAA----AGCA-------TTGCTTTCAGAGCTGCGAAAGAATAGAAA-----------------------GCCAAACTGGA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110469071 548 + 127223203 ATTATTCCTTCAATCTGGTGGCAAGAGGAAAATGCGAGGAGATCTGTAAGTGCTCTATTACTTATGACTTTTGAGAACTGACCCTACTACAGTCAAGCGGTAAGAAGTGAGTGTTAAAGTAAGATTAGGAACGAGAACCCTATCTGAATGAAATGTAT---ATGCTTATATATTCTCCCCTCCCTAGATATCATTGCTGGTT-TTACCTGCTTTATCCCAGAGATTCTAACATCTTTCCATTCTGACGTGTACTG-AAGATGCTTTCTCTAT-AAAAGAACAAGACAGAATAAGCAACAGATTTCTGGCTTCTATTAGGAAGTTGAATGGGCTGTGGAATTGCCTTCAAGGGGCCCCCTCTGGTTAATATGAGGCTGGC-----------------------------------------AGTTGTGGAAGGTGT-----AGTTCAAACTTCAAAGAGTATGTTGCTGCTTTGAGTCT----TG--TGTGAC------TAGTGATGAAAGCTATAGAGCAAGGATTTGAACTTCTCTGTGGGTGATCAAAGATTGGCTGAAGCAA----AAA----AGCA-------TTGCTTTCAGAGCTGCGAAAGAATAGAAA-----------------------GCCAAACTGCA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23813366 543 - 128169293 ATTATTCCTTCAATCTGGTGGGAAGAGGAAAATTCGAGGAGATCTGTAAGTGCTCTGTTTCTTACGCC--GTGAGAACTGGCTCTATTACAGTCAAGCGGTAAGAAGAGAGTGTTA----AAGATTAGGAACAAGAACGCTATTTGAATTAAATTGAT---CTGCTTGCATATTCTCCCCTCCTTAAATATCAGTGCTGGTT-TCACCTGCTTTATTGTAGAGATTCGAACATCTTTCCGTTCTGATATGTACTG-TAGGTGCATTCTCTATAAAAAGAGCAAGACAGAATAAGCAGTAGATCTCTGGCTTCCATTAGCTAGTTGAATGGACTATGGAATTGCATTCAAGGGGTCTTCTCTGGTTAATATGAGGCTGGC-----------------------------------------AGTTGGGGAAGGTGT-----AGTTCATATTTCAAAGAGTACGTTGCTGCTTTGAGTTT----TG--TGTGAC------TAGGGATGAAAGCTATAGAACAAGGATTTGAACTTCTCTGTGGGTGATGGAAGACTGGCTGAAGTGA----AAA----AACA-------TTGCATTCAGAGCTGCTAGAGAACAGAAA-----------------------GCCACACTGCA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40449774 593 + 149736546 ATTACTCCTTCAATCAAAGGGCAAGAGGAAGACCAGAGACTATCTGTAAGTGTACAGTT-CTCTCAGTTTCTGAGAA------CTCCTTTGGGCAAGTGCTAGGTTGAGAGT--------AAGGTTAGGAGTAAGAACTCCACTTGAATGAAGCTGAA---GTACACG-----TCCCTCATCCCTA------------------CAACAGTGTGCACACAG-GACTCTGGCACCTTTCTATTCTGATGTGCACTGCAAGGAGCTTT---TGG-ATAAGAGTTTGGCAGAACAAGAAATAGA--TCTGACTTTCAGTAGACAGCTGAATGTGCTA-GAGACCAAAGTCCATGGATTTCTTTTAGTTACAATGAGGCTAGCAAAGGCATTCGTATtttacaagaccagtgctctaacccctgagctatggagccAGTCACGGCATTCGTATTTTAAACAGTATATTGCTGCTTTGAATTT----GGCCTGTGATACCCGGTGATGATGGGAGCTACAGGGTGGTTGTTTGAACTTTTGTGTAGGTGATAGAAAATGGAACGAAGAGGGGGCAAA----GATAGTGCTGCTTGCTTTCAAAGGCACTTaaaaaaaaaaaaaaaaaagaaaaaaGatgccagggccaaaaagga
i mm10.chr6                C 0 I 115
s canFam3.chr16             52147846 549 -  59632846 ACAATTCCTTCGATCCAATGGCAAGAGGAAAACTCGAGGAGATCTGTAAGTGTACTGTCGCCTCTAACTTTTGGGAACTGGTCTTACTAATGTCAAGTAG--AGGGGAGAGCATGAAAGTAAGATTAGGAACAAGAACTCAACTTGAATGCAACTGATATCATGTTCACACATCCCCTCCTTCCTAAATGTTAATGTTGGTTGTAACCTGCTTTGTCATGGAGATTCTAGTGTCTCCCCATTCTGATATGTACTGTAAGGTATCTTCTCTAT-AAAAGAATAGGGCAGAGTAAGCAATAGACTTTTGACTTCCATTAGCAAAGTGGGCGAGCTATGGAATTGCATTCATGTGGT---CTCTGGATAACAAAAGGCTAGC-----------------------------------------CATTGGGGCAGGTGT-----AGCTCACAGTTCAAGGAGAATCCTGCTGTTTCGAGTCTAGACTG--TGTGAC------------TGAGAGATATAGAGCAAGGATTTGAACCTCTCTGCAGGTGATGGCAGATTGGCTAAAGAGA----AAAACATAGTG-------TTGCTTTTAGAGGTGCT-AAGAATGGAAA-----------------------GCCAAACTGCA
i canFam3.chr16            C 0 C 0
e nomLeu3.chr13             93130285 196 + 110113093 M

a score=218043.000000
s hg38.chr7_GL383534v2_alt     87508  90 +    119183 CTATTCCATAAA-GGGCCCTGAATGACAGAAATCATCCAAATAAGGATTGTGCATATTACTCAGGAACA---------------------------------------TTACTATGTCTCT-----------------------------------------------------------------------------------------------CCAAGGCTT
s panTro4.chr7             143187407  90 + 161824586 CTATTCCATAAA-GGGCCCTGAATGACAGAAATCATCCAAATAAGGATTGTGCATATTACTCAGGAACA---------------------------------------TTACTATGTCTCT-----------------------------------------------------------------------------------------------CCAAGGCTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139009498  90 + 157549271 CTATTCCATAAA-GGGCCCTGAATGACAGAAATCATCCAAATAAGGATTGTACATACTACTCAGGAACA---------------------------------------TTACTATGTCTCT-----------------------------------------------------------------------------------------------TCAAGGCTT
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181024522  88 + 198365852 CTATTCCATAAA-GGCCCCTGAATGACAGAAATTGTCCAAATAAGGATTGTGCATATTACTCAGGAACA---------------------------------------TGACTATGTCTCT-----------------------------------------------------------------------------------------------TCAAGGC--
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174772626  88 + 192294377 CTATTCCATAAA-GGCCCCTGAATGACAGAAATTGTCCAAATAAGGATTGTGCATATTACTCAGGAACA---------------------------------------TGACTATGTCTCT-----------------------------------------------------------------------------------------------TCAAGGC--
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163440850  88 + 180432695 CTATTCCATAAA-GGCCTCTGAATGACAGAAATTGTCCAAATAAGGATTGTGCATATTACTCAGGAACA---------------------------------------TGACTATGTCTCT-----------------------------------------------------------------------------------------------TCAAGGC--
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110469619  88 + 127223203 CTATTCCATAAA-GGCCCCTGAATGACAGAAATTGTCCAAATAAGGATTGTGCATATTACTCAGGAACA---------------------------------------TGACTATGTCTCT-----------------------------------------------------------------------------------------------TCAAGGC--
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23813909  95 - 128169293 CTATTCCATAAA-GGCCCCTGAATGACAGAAACCATCCAAATGAGGATTGTGCATATTACTCAGAAACATT----------------------------------TCTTTACTATATCTCT-----------------------------------------------------------------------------------------------TCAAGGCTT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40450482 225 + 149736546 TTTTCCCCCAAATTGCCACAGAATGGTAAAAGTCACCTAAATAAGGGTTGCTTGTGTTACTTGGTGGCATTAACTACCTTTGTTACATCTCTCCCTCCGTATCCCTCTTTACTGTGTTCCtgtgtgtgtgttgtgtaaatgcgcagtccctggcacatgactgtatgttaggggacaacttaggggaaccgttcctattcgtctaccatgtggatcccagggctt
i mm10.chr6                I 115 I 108
s canFam3.chr16             52148395  94 -  59632846 CAACTCCCCAA--GGCCACTGAATATTAGGAATTGTCCAAATGAGGATTGTGCATATAACTGAGGGACA----------------------------------CTTCTTTACTACGTCTCT-----------------------------------------------------------------------------------------------TCATTGCTT
i canFam3.chr16            C 0 C 0
e nomLeu3.chr13             93130285 196 + 110113093 M

a score=553417.000000
s hg38.chr7_GL383534v2_alt     87598 178 +    119183 ---TTTTATAGAATGGAATCGCCTCCAAAGTGGGGCAGTCATTTATGTTCATATGTACTCAGCGAAATAAATGGACAGCTAACAATGTAAACTTTGCAGAGCATTTAATGTGCTATGTCAAGTTGTTTC-TTTGGAGTCAATGAGTATGTGTTAATCAGTCTT-TGACCAGAATAGGTTCTCT
s panTro4.chr7             143187497 178 + 161824586 ---TTTTATAGAATGGAATCGCCTCCAAAGTGGGGCAGTCATTTATGTTCATATGTACTCAGCGAAATAAATGGACAGCTAACAATGTAAACTTTGCAGAGCATTTAATGTGCTATGTCAAGTTGTTTC-TTTGGAGTCAATGAGTATGTGTTAATCAGTCTT-TGACCAGAATAGGTTCTCT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139009588 178 + 157549271 ---TTTTATAGAATGGAATCGCCTCCAAAGTGGGGCGGTCATTTATGTTCATATGTACTCAGCAAAATAAATGGACAGCTAACAATGTAAACTTTGCAGAGCATTTAATGTGCTATGTCAAGTTGTTTC-TTTGGAATCAATGAGTATGTGTTAATCAGTCTT-TGACCAGAATAGGTTCTCT
i ponAbe2.chr7             C 0 C 0
s rheMac3.chr3             181024610 178 + 198365852 ---CTTTATAGAATGGAATCACTTCCAAAGTGGGGCAGTCATTTATGTTCATATGTACTCAGCAAAATAAATGGACAGCTAACAATGTAAACTTTGCAGAGTGTTTAATGTGCTATGTCAAGTTGTTTC-TTTGGAATCAATGAGTATGTGTTAATCAGTCTT-TGACCAGAATAGGTTCTCT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174772714 176 + 192294377 ---CTTTATAGAATGGAATCACTTCCAAAGTGGGGCAGTCATTTATGTTCATATGTACTCAGCAAAATAAATGGACAGCTAACAATGTAAACTTTGC--AGTGTTTAATGTGCTATGTCAAGTTGTTTC-TTTGGAATCAATGAGTATGTGTTAATCAGTCTT-TGACCAGAATAGGTTCTCT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163440938 177 + 180432695 ---CTTTATAGAATGGAATCACTTCCAAAGTGGGGCAGTCATTTATGTTCATATGTACTCAGCaaaa-aaaTGGACAGCTAACAATGTAAACTTTGCAGAGTGTTTAATGTGCTATGTCAAGTTGTTTC-TTTGGAATCAATGAGTATGTGTTAATCAGTCTT-TGACCAGAATAGGTTCTCT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110469707 176 + 127223203 ---CTTTATAGAATGGAATCACTTCCAAAGTGGGGCAGTCATTTATGTTCATATGTACTCAGCAAAATAAATGGACAGCTAACAATGTAAACTTTGC--AGTGTTTAATGTGCTATGTCAAGTTGTTTC-TTTGGAATCGATGAGTATGTGTTAATCAGTCTT-TGACCAGAATAGGTTCTCT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23814004 167 - 128169293 ---TTTTACAGAATGGAATCACCTCCAAAGTGGGGCAGTCATTTATGTTCATATGTACTCAGCAAAATAAACGGACAGCTAACAATGGAAACTTTGCAGAGCATTGAATGTGCTATCTCAA------------GGAATCAATAAGCATGTGTTAATCAGTCCT-TGACCAGAATAGGTTCTCT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40450815 174 + 149736546 ---TTTTACACAATGGAAACAGTTCTAAAATAGGGAAGCCATTTGTGTTCATACATACTCAGCAAAATAAATGCACAGCTCACTGTCTGAGCTTTGCAGAGCATCTAATGTACTGT-----GCTGTTTC-TTTGGAATGTGTGGCTATGTACTATAAAGCTTTATGGCCAGGCGAGGTTTTGC
i mm10.chr6                I 108 I 1
s canFam3.chr16             52148489 183 -  59632846 CTTTATTACATGATGAAAGCCTCTCTGAAATGGGCCAGTCATTTTTGCTCACATATAGTCAGCAAAATAAATGCACAGCTAACAATCTGAAGTACAAAGAACATTTAATATGTTAGGTTGAGTTGTTTTGTTTGGAATCAATGACTCCGTATCAATCAGCTTTGTGGCCAGAATAGGTTTTCT
i canFam3.chr16            C 0 C 0
e nomLeu3.chr13             93130285 196 + 110113093 M

a score=1981423.000000
s hg38.chr7_GL383534v2_alt     87776 565 +    119183 CAACACTATCTCCTTCTTACTTAAATAAACAGGACTTCAGCACAAGTCCACCCA-CCTACTTTGGCTACCAAGAATTCGATTGG-TTTTAGT--TCTTAAGGAGTCTCTGTAA-ATCATTA--TA----------CT---CTCACCGAAGCCAGCAACAA-AGACAGCTAATATGAAATCC---------------TGACACTTTTGTAGCGTCATTTGGTGCTTCTAAGAGAGTATTTTTCCTTA-----TTTTTATAAT-TTAT-AAACACT------------TCATAAAGTATTACAATGTGGTACTAAA------TCACAAATACCAAGCATTGATTTATTTCCATGAATGTAGTGCCTTCC---ATTTGCCATTTCTACCTTGTGTTTCTCCAAAAGAAAAATCTA-TAGCTAG------------T----TGAAATCTTGCTTAAGGATCCAGAATACAAGTATGCATGGCAAAGAGGATGTCTGCTGGTCACTT-AGCTTATCGAAGAGTAATTGAAAATATCTCATCCCGGGTTAGAGCAGATTCTGCCCTACTTGCAGTCTACCTGTGAACCGATTACAAAGCCAGATTCTAGGGGAGGGGTGGGTGTcggaaagagagtgtggtgtggcagtgag--g
s panTro4.chr7             143187675 565 + 161824586 CAACACTATCTCCTTCTTACTTAAATAAACAGGACTTCAGCACAAGTCCACCCA-CCTACTTTGGCTACCAAGAATTCGATTGG-TTTTAGT--TCTTAAGGAGTCTCTGTAA-ATCATTA--TA----------CT---CTCACCGAAGCCAGCAACAA-AGACAGCTAATATGAAATCC---------------CGACACTTTTGTAGCGTCATTTGGTGCTTCTAAGAGAGTATTTTTCCtta-----tttttataat-ttat-aaataCT------------TCATAAAGTATTACAATGTGGTACCAAA------TCACAAATACCAAGCATTGATTTATTTCCATGAATGTAGTGCCTTCC---ATTTGCCATTTCTACCTTGTGTTTCTCCAAAAGAAAAATCTA-CAGCTAG------------T----TGAAATCTTGCTTAAGGATCCAGAATACAAGTATGCATGGCAAAGAGGATGTCTGCTGGTCACTT-AGCTTATCGAAGAGTAATTGAAAATATCTCATCCCAGGTTAGAGCAGATTCTGCCCTACTTGCAGTCTACCTGTGAACCGATTACAAAGCCAGATTCTAGGTGAGGGGTGGGTGTcggaaagagagtgtggtgtggcagtgag--g
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139009766 565 + 157549271 CAACACTATCTCCTTCTTACTTAAATAAACAGGACTTCAGCACAAGTCCACCCA-CCTACTTTGGCTACCAAGAATTCGATTGG-TTTTAGT--TCTTTAGGAGTCTCTGTAA-ATCATTA--CA----------CT---CTCACCAAAGCCAGCAACAA-AGACAGCTAATTTGAAATCC---------------TGACACTTTTGTAGCGTCATTTGGTGCTTCTAAGAGAGTATTTTTCCTTA-----TTTTTATAAT-TTAT-AAACACT------------TCATAAAGTATTACAATGTGGTACTAAA------TCACAAATACCAAGCATCGATTTATTTCCATGAATGCAGTGCCTTCC---ATTTGCCATTTCTACCTTGTGTTTCTCCAAAAGAAAAATCTA-TAGCTAG------------T----TGAAATCTTGCTTAAGGATCCAGAATACAAGTATGCATGGCAAAGAGGATGTCTGCTGGTCACTT-AGCTTACTGAAGAGTAATTGAAAATATCTCATCCCAGGTTAGAGCAGATTCTGCCCTACTTGTAGTCTACCTGTGAACCTATTACAAAGCCAGGTTCTGGGGGAGGGGTGGGTGTTGgaaggagagtgtggtgtggcagtgag--g
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93130482 565 + 110113093 CAACACTATCTCCTTCTTACTTAAATAAACAGGACTTCAGCACAAGTCCACCCA-CCTACTTTGGCTACCAAGAATTCGATTGG-TTTTAGT--TCTTTAGGAGTCTCTGTAA-ATCATTA--CA----------CT---CTCACTGAAGCCAGCAACAA-AGACAGCTAATTTGAAATCC---------------TGACACTTTTGTAGCGTCATTTGGTGCTTCTAAGAGAGTATTTTTCCTTA-----TTTTTATAAT-TTAT-AAACACT------------TCATAAAGTATTACAATGTGGTACTAAA------TCACAAATACCAAGCATCGATTTATTTCCATGAATGTAGTGCCTTCC---ATTTGCCATTTCTACCTTGTGTTTCTCCAAAAGAAAAATCTA-TAGCTAG------------T----TGAAATCTTGCTTAAGGATCCAGAATACAAGTATGCATGGCAAAGAGGATGTCTGCTGGTCACTT-AGCTTGTTGAAGAGTAATTGAAAATATCTCATCCCAGGTTAGAGCAGATTTTGCCCTACTTGTAATCTACCTGTGAACCGATTACAAAGCCAGATTCTGGGGGAGGGGTGGGTATTGgaaggagagtgtggtgtggcagtgag--g
i nomLeu3.chr13            M 196 C 0
s rheMac3.chr3             181024788 580 + 198365852 CAACACTATCTCCTTCTTACTTAAGTAAACAGCACTTCAGCACAAGTCTACTCA-CCTACTTTGGTTACCAAGAATTCGATTGGTTTTTAGT--TCTTTAGGAGTCTTTGTAA-ATCATTA--CA----------CT---CTCACTGAAGCCAGGAACAA-AGACAGCTGATTTGAAATCTTGGCAATGAAAGTGGTGACACTTTTGTAGTGTCATTTGGTGCTTCTA--AGAGTATTTTTCCtta-----tttttataat-ttataaaaCACT------------TCATAAAGTATTATAATGTGGTACTAAA------TCACAAATACCAAGCATCGATTTAGTTCCATGAATGTAGTGCCCTCC---ATTTGCCATTTCTACCTTGTGTTTCTCCAAAAGAAAAATCTA-TAGCTGG------------T----TGAAATCTTGCTTAAGGATCCAGAATACAAGTATGTGTGGCAAAGAGGATGTCTGCTGGTCACTT-AGCTTATTTAAGAGTAATTGAAAATATCTTATCCCGGGTTATAGCAGATTCTGCCCTACTTGTAGTCTACCTGTAAACTGATTACAAAGCCAGATTCTGGGGGAGGGGTGGGTGTTGgaaggagagtgtggtgtggcagtgag--g
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174772890 580 + 192294377 CAACACTATCTCCTTCTTACTTAAGTAAACAGCACTTCAGCACAAGTCTACTCA-CCTACTTTGGTTACCAAGAATTCGATTGGTTTTTAGT--TCTTTAGGAGTCTTTGTAA-ATCATTA--CA----------CT---CTCACTGAAGCCAGGAACAA-AGACAGCTGATTTGAAATCTTGGCAATGAAAGTGGTGACACTTTTGTAGTGTCATTTGGTGCTTCTA--AGAGTATTTTTCCTTA-----TTTTTATAAT-TTATAAAACACT------------TCATAAAGTATTATAATGTGGTACTAAA------TCACAAATACCAAGCATCGATTTAGTTCCATGAATGTAGTGCCCTCC---ATTTGCCATTTCTACCTTGTGTTTCTCCAAAAGAAAAATCTA-TAGCTGG------------T----TGAAATCTTGCTTAAGGATCCAGAATACAAGTATGTGTGGCAAAGAGGATGTCTGCTGGTCACTT-AGCTTATTTAAGAGTAGTTGAAAATATCTTATCCCGGGTTATAGCAGATTCTGCCCTACTTGTAGTCTACCTGTGAACTGATTACAAAGCCAGATTCTGGGGGAGGGGTGGGTGTTGgaaggagagtgtggtgtggcagtgag--g
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163441115 579 + 180432695 CAACATTATCTCCTTCTTACTTAAGTAAACGGCACTTCAGCACAAGTCTACTCA-CCTACTTTGGTTACCAAGAATTCAATTGG-TTTTAGT--TCTTTAGGAGTCTTTGTAA-ATCATTA--CA----------CT---CTCACTGAAGCCAGGAACAA-AGACAGCTGATTTGAAATCTTGGCAATGAAAGTGGTGACACTTTTGTAGTGTCATTTGGTGCTTCTA--AGagtatttttcctta-----tttttataat-ttataaaacact------------tcATAAAGTATTATAATGTGGTACTAAA------TCACAAATACCAAGCATCGATTTAGTTCCATGAATGTAGTGCCCTCC---ATTTGCCATTTCTACCTTGtgtttctccaaaagaaaaatcta-tagCTAG------------T----TGAAATCTTGCTTAAGGATCCAGAATACAAGTATGTGTGGCAAAGAGGATGTCTGCTGGTCACTT-AGCTTATTTAAGAGTAATTGAAAATATCTTATCCCGGGTTATAGCAGATTCTGCCCTACTTGTAGTCTACCTGTGAACTGATTACAAAGCCATATtctgggggaggggtgggtgtTGGAAGGAGAGTGTGGTGTGGCAGTGAG--G
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110469883 579 + 127223203 CAACACTATCTCCTTCTTACTTAAGTAAACAGCACTTCAGCACAAGTCTACTCA-CCTACTTTGGTTACCAAGAATTCGATTGG-TTTTAGT--TCTTTAGGAGTCTTTGTAA-ATCATTA--CA----------CT---CTCACTGAAGCCAGGAACAA-AGACAGCTGATTTGAAATCTTGGCAATGAAAGTGGTGACACTTTTGTAGTGTCATTTGGTGCTTCTA--AGAGTATTTTTCCTTA-----TTTTTATAAT-TTATAAAACACT------------TCATAAAGTATTATAATGTGGTACTAAA------TCACAAATACCAAGCATCGATTTAGTTCCATGAATGTAGCGCCCTCC---ATTTGCCATTTCTACCTTGTGTTTCTCCAAAAGAAAAATCTA-TAGCTAG------------T----TGAAATCTTGCTTAAGGATCCAGAATACAAGTATGTGTGGCAAAGAGGATGTCTGCTGGTCACTT-AGCTTATTTAAGAGTAATTGAAAATATCTTATCCCGGGTTACAGCAGATTCTGCCCTACTTGTAGTCTACCTGTGAAGTGATTACAAAGCCAGATTCTGGGGGAGGGGTGGGTGTTGgaaggagagtgtggtgtggcagtgag--g
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23814171 577 - 128169293 CAGCACCATCTC-------CTTAAGTAAACAGGACTTCAGCACAAGTCCACACA-TCTACTTTGGCTACTAAGAATTCTATTGG-TTTTAGT--TCTTTAGGAGTCTTCCTAA-GTCATTG--CA----------CT---CTCACTGAAGCCAGCAACAA-AGACAGCTAATTTGAAATCCTGGCAATGAAAGTGGTGACAC-TTTATAGTATCATTTGGTGCTTCTA--AGAGTATTTTTCCTTATTATGTTTTTATGCT-TTATAAAACACT------------TCATAAAATATTACAAAGTGGTGCTAAA------TTGCAAATACCAAGGATCAATTTATTTCCATGAATGTAGTGCCCTCC---ATTTGCCATTTCTACCTTGTGTTTCTCCAAAAGAAGAATCTATTAGCTAG------------T----TGAAATCTTGCTTAAGGATCTAGAATACAAGTATACGTGGCAAAGAGGATATCTGCCGGTAACTT-GGCTTATTGAAGAGTAACTGAAAATATGTCATCCTGGGTTAGAGCAGATTCTGCCCTACTTGTAGTCTACCTGTGAACCGAGTACAAAGCCAGATTCTGGGTGAGGGCTGGGTGTTGgaaggggagtggggtgtgggagtgag--g
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40450990 533 + 149736546 ----------------CCATATAAGCATTCAGTACCTAAACACGAGCCTATCCAGTCTACTTTGGCTACTAAGAATCCTATTGG-TGTTAGGCATCGTTATAAACCTTTGCAATATTACTACCCA----------CTCAACTCAGTGGAGACAGCAGGAAGAGATAGATAATTTGGATT------AATGAAG----AGATACTGCAGTGGCACCATTTAGTGCTCAGG--ACAGGATAACCTCCCA-----TCTTCACTGTGTTGT----CACT------------TTAAGAAGTAT--CAGGGTAatgcc--------------agtgcctggcaca--------tacagaagtgga-tgctcaca---gtcatGAGTTTCTCCCCTGCGCTCCTCTAAAAGAAAACTGTC-TGGTGTG------------TCCACTGAAATCTTGTCTAAAGACCCAGAA---AAGGACTCACACAAAGGAGAATGTTTGTCAATCATTT---CTTATTACAAAATAATTGGAAACCTCTTAGGCAAATTTAT------TTCTGCTATACTCAATTTCTGTCTGTGTACTAAATTCAAAGTTGGGTTCTAGG---GAGGCCAGTGTTAACAGGAGAGCATATTGTGGCTATAAATCA
i mm10.chr6                I 1 C 0
s canFam3.chr16             52148672 604 -  59632846 CAATGCTATCTCCTGCAT-CTTAAGTAAACAGAACTTTAGTACAAGTATACAGG-TCCACTTTTGTTAACAAGAATTCTATTGG-TTTTAGC--TCTTGAGGATTCTTTGCAA-ATCATCA--GAATTGATTCACCT---CTCACTGAAGCTAGTCAGAAGAGACCATTAATTTTAAATCCCTGCAATGAAAGTGATGGCACTTTTGTAACAGCTCTTAGTGCTTCTG----AGTACTTTTTCTCC-----CTTACTTAGT-GTAC-TGTTATTTTTGATGTGGTGTTATAAAGTATTAGAATGTATTATTAAACTTAAGTCACGAATGTCCAGTGTCAATCTGTCCCCATGAGTGTAAAGTCTTCCTCTGTTTACATTTTCTATCCTCTGCTTCTCCAGAAGAAAAATCTA-TAGCTGGCTGCTCTAGAGAT----TGAAATATGGCTTAGAGATCCAGAGTGCAACTGCTCATGCCAAAGAGGATGTTTGTCAGAGACTTCAGCTCATTGGAAAGTAACTGAAAATATCTTAGCCAGCGTTAGAGTTTATTCTGCTGTACTGTTGGTTTGCCTGAGAATCTAGTGCAGAGC----------AGGGGAGGTGGGTGTGGGAGGGGCAG------GTCGCAGTGAG--G
i canFam3.chr16            C 0 I 10

a score=284703.000000
s hg38.chr7_GL383534v2_alt     88341 87 +    119183 agcaaatgctttggtgtcagacctggctccaagt--cccagttctgccacttgctaattgtttgacctagagttatttaacctct---ctct
s panTro4.chr7             143188240 87 + 161824586 agcaaatgctttggtgtcagacctggctccaagt--cccagttctgccacttgctaattgtttgacctagagttatttaacctct---ctct
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139010331 87 + 157549271 agcaaatgctttggcgtctgacgtggctccaagt--cccagttctgccacttgctaattgtttgacctagagttatttaacctct---ctct
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93131047 89 + 110113093 agcaaatgctttggcgtcagacctggctccaagtcccccagttctgccacttgccaattgtttgacctagagttatttaacctct---ctct
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181025368 87 + 198365852 agcaaatgctttggcgtcagacctggctccaagt--ccaagttctgccacttgctaattgtttgacctagagttatttaacctct---ctct
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174773470 87 + 192294377 agcaaatgctttggcgtcagacctggctccaagt--ccaagttctgccacttgctaattgtttgacctagagttatttaacctct---ctct
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163441694 87 + 180432695 AGCAAATGCTTTGGCGTCAGACCTGGCTCCaagt--cccagttctgccacttgctAATTGTTTGACCTagagttatttaacctct---ctct
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110470462 87 + 127223203 agcaaatgctttggcgtcagacctggctccaagt--cccagttctgccacttgctaattgtttgacctagagttatttaacctct---ctct
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23814748 86 - 128169293 ggcaagtgctttggtgtcagacctcgctccaagt--tcttgttctgccacttgctaattgtttgaccttcagttatttaaccgct---ctc-
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40451523 85 + 149736546 AAAATATGGCTTGAGGTCAGACTTGGTTTCAAAT--CCGAGTTTT-----TTGTGAATTGAGGAACACAGTATGGTTTAACATCTCAGCTTT
i mm10.chr6                C 0 C 0
e canFam3.chr16             52149276 10 -  59632846 I

a score=105643.000000
s hg38.chr7_GL383534v2_alt     88428 38 +    119183 gtcttggtttcctagtttggggataaagatacccattt
s panTro4.chr7             143188327 38 + 161824586 gtcttggtttcctagtttggggataatgatacccattt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139010418 38 + 157549271 gtcttgctttcctagtttggggataatgatacccattt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93131136 38 + 110113093 gtcttggtttcctagtttggggataatgatatccattt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181025455 38 + 198365852 gtcttggtttcctagtttgtggatgacgatacccattt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174773557 38 + 192294377 gtcttggtttcctagtttgtggatgacgatacccattt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163441781 38 + 180432695 gTCTTGGTTTCCTAGTTTGTGGATGATGATACCCATTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110470549 38 + 127223203 gtcttggtttcctagtttgtggatgacgacacccattt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23814834 34 - 128169293 ----tggtttcctcgtctgggcataatgatacccattt
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40451608 35 + 149736546 GGC-TGGTTCCTT--TTGGAGGATAACAGCACCTACCT
i mm10.chr6                C 0 I 667
s canFam3.chr16             52149286 12 -  59632846 GGCTctgtttcc--------------------------
i canFam3.chr16            I 10 C 0

a score=117456.000000
s hg38.chr7_GL383534v2_alt     88466 42 +    119183 aacagTTGCACATATGTTCTGtgctctcttgctc-------cagcacat---
s panTro4.chr7             143188365 42 + 161824586 aacagTTGCACATATGTTCTGtgctctcttgctc-------cagcacat---
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139010456 42 + 157549271 aacagTTGCACATATGTTCTGtgctctcttgctc-------cagcacat---
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93131174 42 + 110113093 aacagTTGCACATATGTTCTGtgctctcttgctc-------cagcacat---
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181025493 42 + 198365852 aacagTTTCACATATgttctgtgctgtcttgctc-------cagcacat---
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174773595 42 + 192294377 aacagTTTCACATATgttctgtgctgtcttgctc-------cagcacat---
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163441819 42 + 180432695 AACAGTTTCACATATGTTCTGTGCGCTCTTGCTC-------CAGCACAC---
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110470587 41 + 127223203 aacagTTTCACATATGTTCTGTG-AGTCTTGCTC-------CAgcacat---
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23814868 49 - 128169293 aacagTTTCACATATGTTCTgtgctctctcgctccagttctcagcacat---
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52149298 33 -  59632846 ------------aatcctctgtgtactctcaccc-------ccactgttcag
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40451643 667 + 149736546 I

a score=1639893.000000
s hg38.chr7_GL383534v2_alt     88508 471 +    119183 -ggtgttttacctgctgaaaacctcactcttttcccttagctagttcctactcgttcccagaatcttggcttatatattctctcttctgggaaagcttttcactcttgaaata-------attgagtgctgtccatggtatc-ct-tgttatcttatccag----ttctaggttcttgtattgaaatttcctggttatccctgcctccacatataaaccgaag--ag-aaatgaattgtcttatttactcttacatccctagaacctagcatagt-tcggcctcaataaatattAATTATATA------TTGATAA-ACTTTTTTTTT---CTTTTTTAAGTGAGGAAGCTGGTCCAGAGGAAGGCAAG---GGAG------GGCTGCCTGCCAAGGTAAGCGTAGTTCTTTGTCCCAGCGGCCACAATATAGGCAGTTTATCCTATTCTTTCTCTTCTTCCCCTCCCCTTCTCCCTCTCTCTCCTCCCTCCTCCCTTCTTCCCTACC
s panTro4.chr7             143188407 472 + 161824586 -ggtgttttacctgctgaaaacctcactcttttcccttagctagttcctactcattcccagaatcttggcttatatattctctcttctgggaaagcttttcactcttgaaata-------attgagtgctgtccatggtatc-ct-tgttatcttatccag----ttctaggttcttgtattgaaatttcctggttatccctgcctccacatataaaccgaag--ag-aaatgaattgtcttatttactcttaaatccctagaacctagcatagt-tcggcctcaataaatattAATTATATA------TTGATAA-ACTTTTTTTTT--TCTTTTTTAAGTGAGGAAGCTGGTCCAGAGGAAGGCAAG---GGAG------GGTTGCCTGCCAAGGTAAGCGTAGTTCTTTGTCCCAGCTGCCACAATATAGGCAGTTTATCCTATtctttctcttcttcccctccccttctccctctctctcctccctcttcccttcttccctacc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139010498 466 + 157549271 -ggtgttttacctgctgaaaacctcactcttttcccttagctagttcctactcattcccagaatcttggtttatatattctctcttctgggaaagcttttcactcttgaaata-------attgagtgctgtccatggtatc-gt-tgttatcttatccag----ttctaggttcttgtatcgaaatttcctggttatccctgcctccacatataaaccgaag--ag-aaatgaattgtcttatttactcttacatccctagaacctagcatagt-acagcctcaataaatattAATTATAGG------TTGATAA-ACTTTTTTTTT---CTTTTTTAAGTGAGGAAGCTGGTCCAGAGGAAGGCAAG---GGAG------GGCTGCCTGCCAAGGTA-----AGTTCTTTGTCCCAGCTGCCACAATATAGGCAGtttatcctattctctctcttcttcccctccccttctccctctctctcctccctcctcccttcttccctacc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93131216 470 + 110113093 -ggtgttctacctgctgaaaacctcactcttttcccttaggtagttcctactcattcccagaatcttggcatatatattctctcttctgggaaagcttttcactcttgaaata-------attgagtgctgtccatggtatc-ct-tgttatctaacctgg----ttctaggttcttgtattgaaatttcctggttatccctgactccacatataaatagaag--ag-aaatgaattgtcttatttactcttacatccctagaacctagcatagt-tcaggctcaataaatattAATTATATA------TTGATAA-ACTTTTTTTT----ATTCTTTAAGTGAGGAAGCTGGTCCAGAGGAAAGCAAG---GGAG------GGCTGCCTGCCAAGGTAAGCGTGGTTCTTTGTCCCAGCTGCCACAATATAGGCAGCTTATCCTATTCTCTCTCTTCTTCCCCTCCCCTTCTCCCTCTCTCTCCTCCCTCCTCCCTTCTTGCCTACC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181025535 472 + 198365852 -ggtgttctacctgctgaaaacctcactcttttccctttcctagttcctactcattcccagaatcttggcttatatattctcccttctgggaaagctttttactcttgaaata-------attgagtgctgtccatggtatc-ct-tgctatcttatcctt----ttctaggttcttgtattgaaatgtcctggttatccctgcctccacatttaaaccaaag--agaaaatg-attgccttatttactcttacatccctagaacctagcatagt-tcaggctcaataaatattAATTATATA------TTGATAA-ACTTTTTTTTT-----TCTTTAAGTGAGGAAGCTGGTCCAGAGGAAGGCAAGGGAGGAG------GACTACCTGCCAAGGTAAGCATGGTTCTTTGGCCCAGCTGCCACAACATAGGCAGTTTATCCTATtctctctctccttcccctccccttctccctctctctcctccctcctcccttcttccctacc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174773637 472 + 192294377 -ggtgttctacctgctgaaaacctcactcttttccctttcctagttcctactcattcccagaatcttggcttatatattctcccttctgggaaagctttttactcttgaaata-------attgagtgctgtccatggtatc-ct-tgctatcttatcctg----ttctaggttcttgtattgaaatgtcctggttatccctgcctccacatttaaaccaaag--agaaaatg-attgtcttatttactcttacatccctagaacctagcatagt-tcaggctcaataaatattAATTATATA------TTGATAA-ACTTTTTTTTT-----TCTTTAAGTGAGGAAGCTGGTCCAGAGGAAGGCAAGGGAGGAG------GACTACCTGCCAAGGTAAGCATGGTTCTTTGGCCCAGCTGCCACAACATAGGCAGTTTAtcctattctctctctccttcccctccccttctccctctctctcctccctcctcccttcttccctacc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163441861 471 + 180432695 -GGTGTTCTACCTGCTGAAAACCTCACTCTTCTCCCTTTCCTAGTTCCTACTCAGTCCCAGAATCTTGGCTTATATATTCTCTCTTCTGGGAAAGCTTTTTACTCTTGAAATA-------ATTGAGTGCTGTCCATGGTATC-CT-TGCTATCTTATCCTG----TTCTAGGTTCTTGTATTGAAATTTCCTGGTTATCCCTGCCTCCACATTTAAACCGAAG--AG-AAATG-ATTGTCTTATTTACTCTTACATCCCTAGAACCTAGCATAGT-tcaggctcaataaatattaattatata------ttgataa-acttttttttt-----tctttaagtgagGAAGCTGGTCCAGAGGAAGGCAAGGGAGGAG------GACTACCTGCCAAGGTAAGCGTGGTTCTTTGGCCCAGCTGCCACAACATAGGCAGTTTATcctattctctttctcctttccctccccttctccctctctctcctccctcctcccttcttccctacc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110470628 466 + 127223203 -ggtgtcctacctgctgaaaacctcactcttttccctttcctagttcctactcattcccagaatcttggcttatatattctcccttctgggaaagctttttactcttgaaata-------attgagtgctgtccatggtatc-ct-tgctatcttatcctg----ttctaggttcttgtattgaaatgtcctggttatccctgcctccacatttaaaccgaag--ag-aaatg-attgtcttatttactctta-atccctagaacctagcatagt-tcaggctcaataaatattAATTATATA------TTGATAA-AC-TTTTTTTT-----TCTTTAAGTGAGGAAGCTGGGCCAGAGGAAGGCAAG---GGAG------GACTACCTGCCAAGGTAAGCATGGTTCTTTGGCCCAGCTGCCACAACATAGGCAGTTTAtcctattctctctctccttcccctccccttctccctctctctcctccctcctcccttcttctctacc
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23814917 467 - 128169293 -ggtgttctacttcctgaaaacctttctctgttcccttagctagttcctactcattcccagaatcttggcttatatatcttctcttctgggaaagcattttactcttgaaata-------atcgagtgctgtctatggtatc-ct-tgttatcttatcctg----ttctaggctcttgaattgaaatttcctggttatccctgcctctacatacaaaccgaag--ag-aaatgaatcgtcatatttactcttacatccctagaacctagcatagt-tcaggctcaataaatgttAATCATATA------TTGATAA-ACTTTTTTTTT-------CCTAAGTGAGGAAGCTGGTCCAGAGGAAGGCAAG---GGAG------GGCTGCCTGCCAAGGTAAGTGTGGGTCTTTGGCCCAGCTGCCACAACATAGGCAGTTTATCTTATtctctctctctttcctttccccttctccttctctctcctccctcctccattcttccctacc
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40452310 452 + 149736546 -GGTCATCTACTTGCCTGAAATCTCCATTTCTTTCCTCATTCAGTTCCCATTCCTTCTT-GGGTCTTAGCTTACATATTGTCTTCT---GGAGCCTTTTCCCCTCACGAGATACCCACATACCTGGTGCAGTTCATGGTGTCTCC-TGATGCCCTA----------------TTCTTATCTTGCA---------TCATTTCTGTTCCCTAATGTAAAGTGGAG--AG-GGAAG----GAATTATTTGCTC--ACATCAGCAAAACGTATCACA---CCAGCCTCAGTGTCAATTAATTTCCAATCACCCTTGCTCT-ACCTTTTTTCT------TTTTTAGTGAGGAAACTGGAGAAGAGGAAAGCAAA---TCAGTACAGTGGCTGCCTGCTAAGGTGAGCGTGGTCTCTTGGTCCAACAGTTACAAC--AGACATCTCATTCTATTCATTCT-GCCTGCCTCTCTCTGCCTGTCTCTCTTGCTCTCTATCTCTCTGCTTCCTACCC
i mm10.chr6                I 667 C 0
s canFam3.chr16             52149331 469 -  59632846 ggttgctctgtttgcccagaactccacta-ccaaccttagctgattcctactcgttcttggaaactaagtttgcatatcttctcttttgggaaagacttc---------atga-------tttgggtgctgcctgtaatgtc-ctatgatatcttgttcttattctttcagtttcttatgttgaaatgttctatttatccctgtcttaaaatataaactgaaggagg-gaaggaattgtcttatttactcttacagtcccagaacctagtatagtatcaagcttagtgg-tgctAATCATACA------TTGATATCACTTCTTCTCCCTCTTTTTTTAAGTGAGGAAGCTGACCCAGGGGAAGGCAAG---GTAGAACAAGGGCTGCCTGCCAAGGTGAGCACAGTTCTTTGTTGTAGCTGTCCTAACTTAGTCACTTCTTCCTGTTGCTtccctctcctctctttctttttttctctct----------ctccctcCTTACCAACC
i canFam3.chr16            C 0 C 0

a score=17632.000000
s hg38.chr7_GL383534v2_alt     88979 5 +    119183 CTCCC
s panTro4.chr7             143188879 5 + 161824586 ctccc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139010964 5 + 157549271 ctccc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93131686 5 + 110113093 TTCCC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181026007 5 + 198365852 ctccc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174774109 5 + 192294377 ctccc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163442332 5 + 180432695 ctccc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110471094 5 + 127223203 ctccc
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23815384 5 - 128169293 ttccc
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40452762 5 + 149736546 CTTTC
i mm10.chr6                C 0 I 938
e canFam3.chr16             52149800 0 -  59632846 C

a score=429596.000000
s hg38.chr7_GL383534v2_alt     88984 160 +    119183 TTTTCTCCT-TCCTCACCCTCCCCTCCTCTCCTTCACCCTGCACCCTCCCTCCCCTTCTTCTACCCTCTCCTTCTGCCCTTCTCCTTCTGCCCTCTCTTCCCC-ATCTCCCCTCCTCCCCTCCTTTCTCCTACTCTCCTTCTCTCCTCCCCTCCCCAT-----------CTCA
s panTro4.chr7             143188884 160 + 161824586 ttttctcct-tcctcaccctcccctcctctccttcaccctgcaccctccctccccttcttctaccctctccttctgcccttctccttctgccctctcttcccc-atctcccctcctcccctcctttctcctactctccttctctcctcccctccccat-----------ctca
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139010969 160 + 157549271 ttttctcct-tcctcaccctcccctcctctccttcaccctgcaccctccctccccttcttctaccctctccttctgcccttctccttctgccctctcttcccc-atctcccctcctcccctcctttctcctactctccttctctcctCCCCTCCCCAC-----------CTCA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93131691 158 + 110113093 TTTTCTCCT-TCCTCACCCTCCCCTCCTCTCCTTCACCCTGCACCCTCCCTCCCCTTCTCCTATCTTCCCCTTCTGCCCTT---CTTCTGCACTCTCTTCCCCAATCTCCCCTCCTCCCCTCCTTTCTCCTACTCTCCTTCTCTCCTCCCCTCCCCAC-----------CTCA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181026012 160 + 198365852 ttttctcct-ccctcaccctccccttctTGCCTTTGTCCTGCACACTCCCTCCCCTTCTTCTACCCTCTCCTTCTGGCCTGCTCCTTCTGccctctcttcccc-atctcccctcctcccctcctttctcctactttccttctctcctcccctccccac-----------ccca
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174774114 160 + 192294377 ttttctcct-ccctcaccctccccttcttgcctttgtcctgcacactccctccccttcttctaccctctccttctggcctgctccttctgccctctcttcccc-atctcccctcctcccctcctttctcctactttccttctctcctcccctccccac-----------ccca
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163442337 161 + 180432695 ttttctcctcccctcaccctccccttctcgcctttgtcctgcacactccctccccttcttctaccctctccttctgccctgctccttctgccctctcttctcc-atctcccctcctcccctcctttctcctacttttcttctctcctcccctccccac-----------ccca
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110471099 141 + 127223203 ttttctcct-ccgtcaccctcccctcctctcctttgtcctgcacactccctccctttcttctaccct--------------ctccttctgccctctcttcccc-atctcccctcctcccctcctttctcctactctccttctctcctcccct-----c-----------ccca
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23815389 155 - 128169293 ttttctcct-ccctcaccct-ccctcctcttcctcttcctgtatcttccctccccttcttctaccct--------------ctccttctgccctctcTTCCCT-ATCTCCCCATCTCCCCTCA-TTCTCCTACTCTCCTTCTCTCCTCCCCTCCCAGCTGTGGTGAGCTCCCA
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40452767 938 + 149736546 I
e canFam3.chr16             52149800   0 -  59632846 C

a score=1701472.000000
s hg38.chr7_GL383534v2_alt     89144 569 +    119183 CCCCATCTCACACGCTAGCTTTGTAAATGTGCTTTGCAGCTGAATTTATCTGGACCCTAGTCAGGGTCTGTGTTCTCAGCTAGTTGTAACTCTGCCAGGCAGTGTCTGA-TATGTATA-TGCTGGATCATTACTTTAGAGTAATTTTAAAATTACATATTTCTGCTACTAT-TTTAATCTGGAGAAAAACTCTACACTCATGGGGTAGAGAAGTGAAGGGAAAATT-AAGATATTTTTGGTCTCAAAATAGAAAAAGATAA-TGGAAAAAAGGGGCATAGAGCCAGAGATTTATATGTAAAATTTTAGCTCTTAAATGTATCAATAT---TTGATTTT---ATaatgttcacaatctttgatcc---atccctcatttgataatctaacct-aagaaaataatactgcaaacattatccttagagatg-----tttattgtaacagcaaaaaaggggggag---accaaatgcctgataatag-aaaaatggctaagctaattacagttttaag---------------------tcagtgaaatactaaattgccattaaGATGTTTATAACACCTTGAAAACATGCGTATG-TTAATGTTTAGTGTGCAAAAG
s panTro4.chr7             143189044 568 + 161824586 ccccATCTCACATGCTAGCTTTGTAAATGTGCTTTGCAGCTGAATTTATCTGGACCCTAGTCAGGGTCTGTGTTCTCAGCTAGTTGTAACTTTGCCAGGCAGTGTCTGA-TATGTATA-TGCTGGATCATTACTTTAGAGTA-TTTTAAAATTACATATTTCTGCTACTGT-TTTAATCTGGAGAAAAACTCTACACTCATGGGGTAGAGAAGTGAAGGGAAAATT-AAGATATTTTTGGTCTCAAAATAGAAAAAGATAA-TGGAAAAAAGGGGCATAGAGCCAGAGATTTATATGTAAAATTGTAGCTCTTAAatgtatcaatat---ttgatttt---ataatgttcacaatctttgatcc---atccctcatttgataatctaacct-aagaaaataatactgtaaacattatccttagagatg-----tttattgtaacagcaaaaaaggggggag---accaaatgcctgataatag-aaaaatggctaagctaattacagttttaag---------------------tcagtgaaatactaaattgccattaagatgtttATAACACCTTGAAAACATGTGTATG-TTAATGTTTAGTGTGCAAAAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139011129 570 + 157549271 CCCCATCTCACACGCTAGCTTTGTAAATGTGCTTTGCAGCTGAATTTATCTGGACCCTAGTCAGGGTCTGTGTTCTCAGCTAGTTGTAACTTTGCCAGGCAGTGTCTGA-TATGTATA-TGCTGAATCATTACTTTAGAGTA-TTTTAAAATTAAATATTTCTGCTACTATCTTTAATCTGGAGAAAAATTCTATACTCATGGGGTAGAGAAGTGAAGGGAAAATT-AAGATA-TTTTGGTCTCAAAAAAGAAAAAGATAA-TGGAAAAAAGTGGCATAGAGCCAGAGATTTATATGTAAAATTTTAGCTCTTAAatgtatcaatat---ttgatttt---ataatgttcacaatctttgatct---atccctcatttgataatctaacct-aagaaagtaatactgtaaacattatccctagagatg-----tttattgtaacagcaaaaaaggggggag---accaaatgcctgataatagaaaaaatggctaagctaattacagttttaag---------------------tcagtgaaatattaaattgccattaagatgtttATAACACCTTGAAAACATGCGTATGTTTAATGTTTAGTGTGCAAAAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93131849 568 + 110113093 CCCCATCTCACACTCCAGCTTTGTAACTGTGCTTTGCAGCTGAATTTATCTGGACCCTAGTCAGGGTCTATGTTCTCAGCTAGTTGTAACTTTGCCAGGCAGTGTCTGA-TATGTATA-TGCTGAATCGTTATTTTAAAGTA-TTTTAAAATTAAATTTTTCTGCTACGGTCTTTAATCTGGAAAAAAATTCTCCCTCCTGGGGGTAAAGAATTGAAGGGAAAATT-AAAATTTTTTTGGTCTCAAAATAAAAAAAGATAA-TGAAAAAAAGGGGCTTAGAG-CAGAAATTTATATGTAAAATTTTAGCTATTAAG-GTATCAATAT---TTGATTTT---ATATGGTTCCCAATCTTTGATCT---ATCCCTCATTTGATAAACTAACCT-AAAAAAATAATACTGTAAACATTATCCTTAGAGATG-----TTTATTGTAACAGCAAAAAAGGGGGGAG---ACCAAATGCCTGATAATAG-AAAAATGGCTAAGCTAATTACAGTTTTAAG---------------------TCAGTGAAATATTAAATTGCCATTAAGATGTTTATAACACCTTGAAAACATGCATATGTTTAATGTTTAGTGTGCAAAAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181026172 590 + 198365852 ccccACCTCACACTCTAGCTTTGTAAATGTGCTTTGCAGCTGAATTTATCTAGACCCTACTCAGGGTCTATGTTCTCCACGAGTTGTAACTTTGCCAGGCAGTGTCTGATTATGTATA-TGCTGAATCATTACTTTAGAGTA-TTTTAAAATTAAGTATTTCTGCTTCTATCTTTAATCTGGAGAAAAATTCTACACTCATGGGGTAGAGAAGTGGAGGGAAAATT-AAGATATTTTTGGTCTCAAAATAGAAAAAGAGAATTGGAAAAAAATGGCATAGAGCCAGAGATTTATATGTAAATTTTTAGCTTTTAAATGTATTAATAT---TTGATTTT---ATAATATTCACAACCTTTGATCT---AGCCCTCATTTGATAATCTAACCT-AAAAAA--AATACTGTAAATATTATCCTCAGAGATG-----CTGATTGTAATAGCAAAACAGGGGGGAG---ACCAAATGCCTTATAATAG-AAAAATGGCTAAGCTGATTACAGTTTTAATGTAATATTGTTAATTTAATGCTCAGTGGAGTATTAAATTGCCATCAAGATGTTTATAATACCTTGAAAACATGTGTATGTTCAAGGTTCAGAGTG-AAAAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174774274 588 + 192294377 ccccacctcacactctAGCTTTGTAAATGTGCTTTGCAGCTGAATTTATCTGGACCCTACTCA-GGTCTATGTTCTCCACGAGTTGTAACTTTGCCAGGTAGTGTCTGA-TATGTATA-TGCTGAATCATTACTTTAGAGTA-TTTTAAAATTAAGTATTTCTGCTTCTATCTTTAATCTGGAGAAAAATTCTACACTCATGGGGTAGAGAAGTGGAGGGAAAATT-AAGATATTTTTGGTCTCAAAATAGAAAAAGAGAATTGGAAAAAAATGGCATAGAGCCAGAGATTTATATGTAAATTTTTAGCTTTTAAATGTATTAATAT---TTGATTTT---ATAATATTCACAACCTTTGATCT---ATCCCTCATTTGATAATCTAACCT-AAAAAA--AATACTGTAAATATTATCCTCAGAGATG-----CTGATTGTAATAGCAAAACAGGGGGGAG---ACCAAATGCCTTATAATAG-AAAAATGGCTAAGCTGATTACAGTTTTAATGTAATATTGTTAATTTAATGCTCAGTGGAGTATTAAATTGCCATTAAGATGTTTATAATACCTTGAAAACATGTGTATGTTCAAGATTCAGAGTG-AAAAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163442498 567 + 180432695 ccccacctcacactctAGCTTTGTAAATGTGCTTTGCAGCTGAATTTATCTGGACCCTACTCAGGGTCTATGTTCTCCGCGAGTTGTAACTTTGCCAGGCAGTGCCTGA-TATGTATA-TGCTGAATCATTACTtgagagta-ttttaaaattaaatatttctgcttCTATCTTTAATCTGGAGAAAAATTCTACACTCATGGGGTAGAGAAGTGAGGggaaaatt-aagatatttttggtctcaaaatagaaaaagagaattggaaaaaaatggcaTAGAGCCAGagatttatatgtaaatttttagcttttaaatgtattaatat---ttgatttt---ataatgTTCACAACCTTTGATCT---ATCCCTCATTTGATAATCTAAcct-aaaaaa--aatactgtaaatattATCCTCAGAGATG-----CTGATTGTAATAGCAAAAAAGGGGGGAG---ACCAAATGCCTTAT-ATAG-AAAAATGGCTAAGCTAATTACAGTTTTACG---------------------TCAGTGGAATATTAAATTGCCATTAAGATGTTTATAATACCTTGAAAACATGTGTATGTTCAAGGTTCAGAGTG-AAAAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110471240 589 + 127223203 ccccacctcacactctAGCTTTGTAAATGTGCTTTGCAGCTGAATTTTTCTGGACCCTACTCAGGGTCTATGTTCTCCGCGAGTTGTAACTTTGCCAGGCAGTGTCTGA-TATGTATA-TGCTGAATCATTACTTTAGAGTA-TTTTAAACTTAAATATTTCTGCTTCTATCTTTAATCTGGAGAAAAACTCTACACTCATGGGGTAGAGAAGTGAAGGGAAAATT-AAGATATTTTTGGTCTCAAAATAGAAAAAGAGAATTGGAAAAAAATGGCATAGAGCCAGAGATTGATATGCACATTTTTAGCTTTTAAA-GTATTAATAT---TTGATTTT---ATAATGTTCACAACCTTTGATCT---ATCCCTTATTTGATAATCTAACCTAAAAAAA--AATACTGTAAATATTATCCTCAGAGATG-----CTGATTGTAATAGCAAAACAGGGGGGAG---ACCAAATGCCTTATAATAG-AAAAATGGCTAAGCTGATTACAGTTTTAATGTAATATTGTTAATTTAATACTCAGTGGAGTATTAAATTGCCATTAAGATGTTTATAATACCTTGAAAACATGTGTATGTTCAAGGTTCAGAGTG-AAAAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23815544 449 - 128169293 CCTCAGCTCACACTCTTGCTTTGTAAATGTGCTTTGCAGCTGAATTTATCCAAACCCTAGTCAGAGTCTGTGTTCTCAGCTAGTTGTTACTTTGTCAGGCCGTGTCTGA-GATGTATATTGCTGAATCATTACTTCAGAGTA-TTTTTAAATTAAATATTTCTGC-------------------------------------------------------------------------------------------------------AAAATGGCATAGAGCCAGAGATTTATATGTAAAACTTTAGCTCTTAAATGTATCAATAT---TTGATTTT---ATAATATTCACAGTCTTTAATCT---ATCCCTCATATGATAATCTAACCT-AAGAAAATAATACTGTAAATATTATCCTCAGAGATG-----TTTATTGTAACAGCAAA-----------------AAATGCCTGCTAATAG-AAAAATGGCTAAGCTAATTATAGTTTTAAA---------------------TGAGTGGAATGTTAAATTGTCATTAAGATGTTTATAATACCTTGAAAACATGCATATG-------TTCAGTGTGCAAAAG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52149800 584 -  59632846 CCACAACTCACTTTGTAGATTTACAAATGTGCTTTGCAGCTGAATTGATCTGGACTCTCATCAGGGTCTATATTCTTAGCTAGTTATTACTGTATCAGACAG-GCCTGA-TAAGCGTATTGCTGAATCATTACCTTGGAGTG-TTGTAAAATTAATGGCTACTGCTTCTATCTTGGATTTAGGGAAAAATTCTATATTCATGGGGTAGAAGGGTGAAGGGAAAATTCAAGATATTTAAGGTCCAAAAATGGAAAGGCAGAAGAGAGAAAAAATGGCATAAAGCTGTAAATTTAGATGTAAAATTTTGGCTCTTAAATGTGTCAGTATCTACTGATTTTTAAATAATGTTCACAATCTTTGAGATAGCATCCCTCATTTGATAACCTAGTCT-AAGAAAA-AATACTGTAAATATTAGCACCAttattgcagccttaactgtaatggcaaaaaaaaaaaaagagtactaaatgtccaattataa-aagaatggctaaataaactataattt-------------------------atagtagaatattaaattgccattaagaagTTTATAATACCATGAAAGCATGCTTGTAGTCAATACTCAGTTTATGAAAG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40452767 938 + 149736546 I

a score=1616468.000000
s hg38.chr7_GL383534v2_alt     89713 550 +    119183 ACTCAAAATTTTATACGCTGAATGACCATAACTATCTATTGCACATTAATCACAGGGAGAATGAAATGGAGCTATAACCACTGCTATTTCAACATTTTTGAATGGTGGAAACTTCATATTTGTTTTTCCTTTAAA-TTTTTAAAGTTTTCTGAAGCAAGTTTTATTTGCGTAAAT-AAATATGTTAATATGTT-AAAATGTTAGCACTTGGCTATTGTAAACATCACAGAAAAGGCGGCCACTGGCACAGGTGTTCCTTCAAATGCAAATGTTTCTGACTTATGCCTCCATTATTTTACTGTTGGATTTTATTCCTCACTTATTTTATAATTTATCTCTTGATTTCAGATAGAAATTCTAA---TATTTATTGAACATTAAATAAGTGCAAAGCATTGTATTTAGTTAC--ACCCTTTAAGGAAAAACATCTGGCCAAACAGGAGTTAAAACCTTTGAAATTTCAAAACAatctatatgtaaattagaagctatgagatatatgtatttgtgtatatgtgtatgtacatatgtgcaatgtgaatatacatatgCGTGT
s panTro4.chr7             143189612 550 + 161824586 ACTCAAAATTTTATACGCTGAATGACCATAACTATCTATTGCACATTAATCACAGGGAGAATGAAATGGAGGTATAACCACTGCTATTTCAACATTTTTGAATGGTGGAAACTTAATATTTGTTTTTCCTTTAAA-TTTTTAAAGTTTTCTGAAGCAAGTTTTATTTGCGTAAAT-AAATATGTTAATATGTT-AAAATGTTAGCACTTGCCTATTGTAAACATCACAGAAAAGAAGGCCACTGGCACAGGTGTTCCTTCAAATGCAAATGTTTCTGACTTATGCCTCCATTATTTTACTGTTGGATTTTATTCCTCACTTATTTTATAATTTATCTCTTGATTTCAGATAGAAATTCTAA---TATTTATTGAACATTAAATAAGTGCAAAGCATTGTATTTAGTTAC--ACCCTTTAAGGAAAAACATCTGCCCAAACAGTAGTTAAAACCTTTGAAATTTCAAAACAATCTATATGTAAATTAGAAGCTATGAGatatatgtatttgtgtatatgtgtatgtacatatgtgcaatgtgaatatacatatgcgtgt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139011699 547 + 157549271 AATCAAAA-TTTATACGCTGAATGACCATAACTATCTATTGCACATTAATCACAGGGAGAATGAAATGGAGCTATAACCACTGCTATTTCAACATTTTTGAATGGCGGAAACTTAGTATTTGTTTTTCCTTTAAA-TTTTTAAAGTTTTCTGAAGCAAGTTTCATTTGCGTACAT-AAATATGTTAATATGTT-AAAATGTTAGCACTTGGCTATTGTAAACATCACAGAAAAGAAGGCCACTGGCACAGGCGTTCCTTCATATGCAAATGTTTCTGACTTATGCCTCCATTATTTTACTTTTGGATTTTATTCCTCACTTATTTTATAATTTATCTCTTGATTTCAGATAGAAATTCTAA---TATTTATTGAACATTAAATAAGTGCAAAGCATTGTATTTAGTTAG--ACCCTTTAAGGAAAAACATCTGCCCAAACAGGAGTTAAAACCTTTGAAATTTCAAAACAATCTATACGTAAATTAGAAGCTATGAGAtatgtgtatttgtg--tatgtgtatgtacatatgtgcaatgtgaatatacatatgcgtgt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93132417 551 + 110113093 ACTCAAAATTTTATATGCTGAATGACCATAACTATCTATTGCACATTAATCACAGGGAGAATGAAATGGAGCTCTAACCACTGCTATTTCAACATTTTTGAATGGTGGAAACTTAATATTTGTTTTTCCTTTAAATTTTTTAAAGTTTTCTGAAGCAAGTTTTATTTGTGTAAAT-AAATATGTTAATATGTT-AAAATGTTAGCACTTGGCTATTGTAAACATCATAGAAAAGAAGGTCACTGGCACAAGCGTTCCTTCATATGCAAATGTTTCTGACTTATGCCTCCATTATTTTACTCTTGGATTTTATTCCTCACTTATTTTATAATTTATCTCTTGATTTCAGATAGAAATTCTAA---TATTTATTGAACATTAAATAAGTGCAAAGCATTGTATTTAGTTAG--ATCCTTTAAGGAAAAACATCTGCCCAAACAGGAGTTAAAACCTTTGAAATTTCAAAACAATCTATACGTAAATAAGAAACTATGAGCtatgtgtatttgtgtatatgtgtatgtacatatatgcaatgtgaatatacatatgtatgt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181026762 551 + 198365852 ACTCAAAGTTTTATATCCTGAATGACCATAACTACCTATTGCACATTAATCACAGGGAGAATGAAATGCAGCTATAACCACTGCTATCTCAACATTTTTGAAAGGTGGAAATTTAATATTTGTTTTTCCTTTAAA-TTTCTAAAGTTTTCTGAAGCAAGTTTTATTTGCATAAAT-AAATATGTTAATATGTTAAAAATGTTAGCACTTGGCTATTGTAGACATCATAGAAAAGAAGGCCACTGGCACAGTCTTTCCTTCATATGCAAATGTTTCTGACTTAGGACTTCATTATTTTACTCTTGGATTTTATTCCTCACTTATTTTATAATTTATCTCTTGATTTCAGATAGAAATTCTAA---TGTTTATTGAACATTAAATAAGTGCAAAGCATTGTATTTAGTTAG--ACCCTTTAAGGAAAAAAATCTGCTCAAACAGAAGTTAAAACCTTTGAAATTTCAAAACAATCTATACATAAATAAGAAGCTATGAGatatgtgtatttgtgtatatgtgtatgtacatatgtgcaatgtgaatatacatatgcgtgt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174774862 551 + 192294377 ACTCAAAGTTTTATATCCTGAATGACCATAACTACCTATTGCACATTAATCACAGGGAGAATGAAATGCAGCTATAACCACTGCTATTTCAACATTTTTGAAAGGTGGAAATTTAATATTTGTTTTTCCTTTAAA-TTTCTAAAGTTTTCTGAAGCAAGTTTTATTTGCATAAAT-AAATATGTTAATATGTTAAAAATGTTAGCACTTGGCTATTGTAGACATCATAGAAAAGAAGGCCACTGGCACCGTCTTTCCTTCATATGCAAATGTTTCTGACTTAGGACTTCATTATTTTACTCTTGGATTTTATTCCTCACTTATTTTATAATTTATCTCTTGATTTCAGATAGAAATTCTAA---TGTTTATTGAACATTAAATAAGTGCAAAGCATTGTATTTAGTTAG--ACCCTTTAAGGAAAAAAATCTGCTCAAACAGAAGTTAAAACCTTTGAAATTTCAAAACAATCTACACATAAATAAGAAGCTATGAGATATGTGTATTTGTGTATATGTGTATGTACATATGTGCAATGTGAATATACATATGCGTGT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163443065 551 + 180432695 ACTCAAAGTTTTATATCCTGAATGACCATAACTATCTATTGCACATTAATCACAGGGAGAATGAAATGGAGCTATAACCACTGCTATTTCAACATTTTTGAAAGGTggaaatttaatatttgtttttcctttaaa-tttctaAAGTTTTCTGAAGCAagttttatttgcataaat-aaatatgttaatatgttaaaaatgttAGCACTTGGCTATTGTAGACATCATAGAAAAGAAGGCCACTGGCACAGTCTTTCCTTCATATGCAAATGTTTCTGACTTAGGCCTTCATTATTTTACTCTTGGATTTTATTCCTCAcgtattttataatttatctctTGATTTCAGATAGAAATtctaa---tgtttattgaacattAAATAAGTGCAAAGCATTGTATTTAGTTAG--AccctttaaggaaaaaaatctgccCAAACAGAAGTTAAAACctttgaaatttcaaaacaatCTATACATAAATAAGAAGCtatgagatatgtgtatttgtgtatatgtgtatgtacatatgtgcaatgtgaatatacatatgtgtgt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110471829 544 + 127223203 ACTCAAAGTTTTATATCCTGAATGACCATAACTACCTATTCCACATTCATCACTGGGAGAATGAAATGCAGCTATAACTACTGCTATTTCAACATTTTTGAAAGGTGGATATTTAATATTTGTTTTTCCTTTAAA-TTTCTAAAGTTTTCTGAAGTAAGTTTTATTTGCATAAAT-AAATATGTTAATATGTTAAAAATGTTAGCACTTGGCTATTGTAGACATCATAGAAAAGAAAGCCACTGGCACAGTCTTTCCTTCATATGCAAATGTTTCTGACTTACGCCTTCATTATTTTACTCTTGGATTTTATTCCTCACTTATTTTGTAATTTATCTCTTGATTTCAGATAGAAATTCTAA---TGTTTATTGAACATTAAAT-------AAGCATTGTATTTAGTTAG--ACCCTTTAAGGAAAAAAATCTGCCCAAACAGAAGTTAAAACCTTTGAAATTTCAAAACAATCTATACATAAATAAGAAGCTATGAGATATGTGTATTTGTGTATATGTGTATGTACATATGTGCAATGTGAATATACATATGCGTGT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23815993 543 - 128169293 ATTCAAAATGTTATATGCTGAATGACCATAACTATCTATGGTACATTAATCACAGGGAGAAGGAAATGGAGCCATAACCACTGCTATTTCAACATTTTTGAATGGTGGAAACTTAATGTTTGTTTTTCCTTTAAA-TTTCTAAAGTTTTCCGAATCAAGTTTTCTTTGCATAAATGAGATAGGTTAATATGTT-AAAATGTTAGCACTTGGCTATTGTAAACATCATAGAAAAGAAGGCCCCTGGCACAGGGTTTCCTTCACATGCAAATGTTTCTGACTTATGCCTTCATTATTTTACTCTTCGATTTTATTCCTCAC-----TTTTAATTTGTCTCCTGATTTCAGATAGAAACTCTAACACTATTTATTAAACATTCAATAAGTGCAAAGCCTTGTATTTAGTTAGAAACCCTTTAAGGAAAAGAATCTGCCC-AACAAGAGTTAAAACCTTTGAAATTTCAAAACGATTTATACATAAATAGGAAGCTATGAGacatgtgtatttgtgtatatgtgtatgtacatatgtgc-------acatactcttacatgt
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40452767 938 + 149736546 I
e canFam3.chr16             52150384   0 -  59632846 C

a score=436875.000000
s hg38.chr7_GL383534v2_alt     90263 145 +    119183 ATA-TCTTTAAAATCTAGAAGTGGTTAGTAAATACTTCTATGAAATAGAGCTTGGGTAGGAAG----------AGAT-TGTATATTAAGATAATTTTAGGCTAAGGAAGTAAATAACTTTTAATGCTATCAAGGCAGGAGAACAGAGTTCAGGTGTA
s panTro4.chr7             143190162 145 + 161824586 ata-tCTTTAAAATCTAGAAGAGGTTAGTAAATACTTCTATGAAATAGAGCTTGGGTAGGAAG----------AGAT-TGTATATTAAGATAATTTTAGGCTAAGGAAGTAAATAACTTTTAATGCTATCAAGGCAGGAGAACAGAGTTCAGGTGTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139012246 145 + 157549271 ata-tatttaAAATCTAGAAGGGGTTAGTAAATACTTCTATGAAATAGGGCTTGGGTAGGAAG----------AGAT-TGTATATTAAGATAATTTTAGGCTAAGGAAGTAAATAACTTTTAATGCTATCAAGGCAGGAGAACAGAGCTCATGTGTA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93132968 145 + 110113093 ata-tatttaAAATCTAGAAGGGGTTAGTAAATACTTCTATGAAATAGGACCTGGGTAGGAAA----------AGAT-TGTATATTAAGATAATTTTAGGCTAAAGAAGCAAATAACTTTTAATGCTATCAAGGCAGGAGAACAGAGTTCATGTGTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181027313 143 + 198365852 ata-tatttaAAATCTAGAAGGGGTTAGTAAATACTTCTATGAAATAGGACTTGGGTAGGAAG----------AGAT-TGTATATTAAGATAATTTTAGGCTAAGGAAGTAAACAAC--TTAATGCTATCAAGGCAGGAGAACAGAGTTCATGTGTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174775413 143 + 192294377 ATA-TATTTAAAATCTAGAAGGGGTTAGTAAATACTTCTATGAAATAGGACTTGGGTAGGAAG----------AGAT-TGTATATTAAGATAATTTTAGGCTAAGGAAGTAAACAAC--TTAATGCTATCAAGGCAGGAGAACAGAGTTCATGTGTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163443616 143 + 180432695 ata-tatttaaaatctagAAGGGGTTAGTAAATACTTCTATGAAATAGGACTTGGGCAGGAAG----------AGAT-TGTATATTAAGATAATTTTAGGCTAAGGAAGTAAATAAC--TTAATGCTATCAAGGCAGGAGAACAGAGTTCATGTGTA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110472373 143 + 127223203 ATA-TATTTAAAATCTAGAAGGGGTTAGCAAATACTTCTATGAAATAGGACTTGGGTAGGAAG----------AGAT-TGTATATTAAGATAATTTTACGCTAAGGAAGTAAATAAC--TTAATGCTATCAAGGCAGGAGAACAGAGTTCATGCGTA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23816536 143 - 128169293 ata-tatttaAAATCTATAAGGAATTAGTAAATACTTCAGTGAAATAGGACTT-GGTAGGAAG----------AGAT-AGTATATTCAGATAATTTTAGACAAAGGAAATAAATAAC-TTCAATGCTATCAAGAAAGGAGAACAGAGTGCATGTGTA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40453705 156 + 149736546 atagcatttgaaat-tagaaatgtatataaagaaaatatctaataaaaaaTTTAAAAAGAAAGCAAAATAATCAGATGTATGTGTACAGATAATACTAGGCAAAGAAAAGAACTAGTGTATAATTCTCTAAAAACTGGGGGATGGGGTCTGGTTGAG
i mm10.chr6                I 938 C 0
e canFam3.chr16             52150384   0 -  59632846 C

a score=1233636.000000
s hg38.chr7_GL383534v2_alt     90408 336 +    119183 AGAGGGGTATGGTGGGTG-GG-GAGTGGTCAGGGATAGATGCAGATGGTATACTGGCTTCATTGGTATCTAGGGGGAGGGTAGTCAAGTAGTGAGTGCGCAGTTGGTAGAAGGTCTTGAGGCTTTCTTATCAAGAGTTTGAATTTCTCATGGGAAACAATTAGGCATCTCTGATTCTGTGGTATCATTTTGCAAAAATAATTCTT-ACTATTAGAAGAGTTAAAGAGAGGGCTGGTAGCTGTAGCCAATCCAGACAAGAAGGGAACAGAGCTTGAGACTGGCTAAGGGTAATGAAAATTAAGAGATCTTGCTGATGA-A-AGTGACCAGAATTAGATGTTG
s panTro4.chr7             143190307 336 + 161824586 AGAGGGGTATGGTGGGTG-GG-GAGTGGTCAGGGATAGATGCAGATGGTATACTGGCTTCATTGGTATCTAGGGGGACGGTAGTCAAGTAGTGAGTGCGCAGTTGGTAGAAGGTCTTGAGGCTTTCTTATCAAGAGTTTGAATTTCTCATGGGAAACAATTAGGCATCTCTGATTCTGTGGTATCATTTTGCAAAAATAATTCTT-ACTATTAGAAGAGTTAAAGAGAGGGCTGGTAGCTGTAGCCAATCCAGACAAGAAGGGAACAGAGCTTGAGACTGGCTAAGGGTAATGAAAATTAAGAGATCTTGCTGATGA-A-AGTGACCAGAATTAGATGTTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139012391 335 + 157549271 AGAGGGGTATGGTGGGTG-GG-GAGTGGTCAGGGATAGATGCAGATGGTATACTGGCTTTGTTGGTATCTAGAGGGAAGGTAGTCAAGTAGTGAGTGTGCAGTTGGTAGAAGGTCTTGAGGCTTTCTTATCAAGAGTTTGAATTTCTCATGGGAAACAATTAGGCATGTCTGATTCTATGGTATCATTTTGCAAAAATAACTCTT-ACTAGTAGAAGAGTCGAAGAGAGGGCTGGTAGCTGTAGCAAATCCAGACAAGAAGGGAACAGAGCTTGAGACTAGCTAAGGGTTATGAAAATTAAGAGATCTTGCTGATGA-A-AGTGACTAGAATTAGATG-TG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93133113 336 + 110113093 AGAGGGGTACAGTAGGTG-GG-GAGTGGTCAGGGATAGATGCAGGTGGTACACTGGCTTTGTTGGTATCTAGGGGGCGGGTAGTCAAGTAGTGAGTGTGCAGTTGGTAGAAGGTCTTGAGGCTTTCTTATCAGGAGTTTGAATTTCTCATGGGAAACAATTAGGCATCTCTGATTCCATGGTATCATTTTGCAAAAATAACTCTT-ACTATTAGAAGAGTTGAAGAGAGGGCTGGTAGCTGTAGCAAATCCAGACAAGAAGGGAACAGAGCTTGAGACTGGCTAAGGGTAATGAAAATTAAGAGATCTTGCTGATGA-A-AGTGATTGGAATTAGATGATG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181027456 334 + 198365852 AG-GGGGCAGGGTGGGAG-GG-GAGTGGTCAGGGATAGATGCAGATGGTACACTGGCTTCGTTGGTATCTAGGGGGAGGGTAGTCAAGTAGTGAGTGTGCAGTTGGTAGAAGGTCTTGAGGCTTTCTTATCAGGAGTTTGAATTTCTCATGGGAAACAATTAGGTATCTGTGATTCTATGGTATCATTTTGCAAAAATAACTCTT-ACTATTAGAAGAGTTGAAGAGAGGGCTGGTAGCTGTAGCAAATCCAAACAAGAAGGGAACAGAGCTTGAGACTGGCTAAGGGTAATGAAAATT-AGAGATCTTGCTGATGA-A-AGTGATTGGAATTAGATGTTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174775556 334 + 192294377 AG-GGGGCAGGGTGGGAG-GG-GAGTGGTCAGGGATAGATGCAGATGGTACACTGGCTTCGTTGGTATCTAGGGGGAGGGCAGTCAAGTAGTGAGTGTGCAGTTGGTAGAAGGTCTTGAGGCTTTCTTATCAGGAGTTTGAATTTCTCATGGGAAACAATTAGGTATCTGTGATTCTATGGTATCATTTTGCAAAAATAACTCTT-ACTATTAGAAGAGTTGAAGAGAGGGCTGGTAGCTGTAGCAAATCCAAACAAGAAGGGAACAGAGCTTGAGACTGGCTAAGGGTAATGAAAATT-AGAGATCTTGCTGATGA-A-AGTGATTGGAATTAGATGTTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163443759 335 + 180432695 Agaggggcagggtgggag-gg-gaATGGTCAGGGATAGATGCAGATGGTACACTGGCTTTGTTGGTATCTAGGGGGAGGGTAGTCAAGTAGTGAGTGTGCAGTTGGTAGAAGGTCTTCAGGCTTTCTTATCAGGAGTTTGAATTTCTCATGGGAAGCAATTAGGTATCTCTGATTCTATGGTATCATTTTGCAAAAATAACTCTT-ACTATCAGAAGAGTTGAAGAGAGGGCTGGTAGCTGTAGCAAATCCAAACAAGAAGGGAACAGAGCTTGAGACTGGCTAAGGGTAATGAAAATT-AGAGATCTTGCTGATGA-A-AGTGATTGGAATTAGATGTTG
i papAnu2.chr3             C 0 I 304
s chlSab2.chr21            110472516 334 + 127223203 AG-GGGGCAGGGTGGGAG-GG-GAGTGGTCAGGGATAGATGCAGATGGTACACTGGCTTCCTTGGTATCTAGAGGGAGGGTAGTCAAGTAGTGAGTGTGCAGTTGGTAGAAGGTCTTGAGGCTTTCTTATCAGGAGTTTGAATTTCTCATGGGAAACAATTAGGTATCTCTGATTCTATGGTATCATTTTGCAAAAATAACTCTT-ACTATTAGAAGAGTTGAGGAGAGGGCTGGTAGCTGTAGCAAATCCAAACAAGAAGGGAACAGAGCGTGAGACTGGCTAAGGGTAATGAAAATT-AGAGATCTTGCTGATGA-A-AGTGATTGGAATTAGATGTTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23816679 336 - 128169293 GGAGCTGTAGGGTGGGTGAGG-GAGTGGTCAGGGAGAAATGCAGATGGTATACTGGCTTCGCTGGTATCTCGGGGGAGGGTAGTCAAGTAGTGGGTGTGCAGCTGGTAGAAGGTCTTGAGGCTTTCTCACCAGGAGTTTGAATTTCTCATGGGAAACAATTAGGCGTCTCTGATTCTATAGTATCATTTTGCAAAAATAACTCTTAACTAGTAGAGGAGTTGAA-AGAGGGCTAGTAGCAGTAGCAAATCCAAACAGGAAGGAAACAGAGCTTGAGACTGGCTGAGAGTAATGAAAATT-AGAGATCTTGCTGATGA-A-AGTGATTGGAATCTGATTTTG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40453861 296 + 149736546 AG---GGTGGGTTGGGTG-GGTGAGTGGCTGGAAGTGG-------------GCTGGCATGTTTG--AGCTAAAAAGAGGGTGGCCA------GAGCACTCAGTTGCTAAGAGGGCTTTGCGTCT-----------GTTTAACTCTCTCACAGTAAACAACTAGG--GTTTTAATTCTGTGGAATCATTTTGCAAAAGTG----TT-ATTACTAGAATAGTTGGAAAGAGAGTTGGTAGTGGAGGCAAATCCCAATATGGAAGAATCAGAGATTAGGATTGCTTAAGGGCAAAGAAAATT-ACAGGTCTTGCTGATAAGG-ACTGATTGGAATTGCATGTAA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52150384 323 -  59632846 -------TGAAGGGGGGA-GG-GCTTGATGGATGAGTGATGTGGATGGTAAGCTGGCTTATTTGGTGTCTGAGATGAGGATGGGAAGGTAGTGGCTGAGCAACTGGTAGAAGGCCTTGAGG-TCTCTGACCAGAAGTTTGGTTTCCTTATAGGAGACAATTAGGTATGTTGGATTCT-----ATCATTTTGCAAAAATAATTTTC-ACTATTAGAAGAGATGGAAAGAGGGCTGGTAGCTATGGCAGCTCCAGACACGGGGGAAACAGAATTGGAGATTGGCTAAGGGCAATGAAAATT-CTAGATCTTGCTAATGA-AGACTGATTGGTATTGGATGTTG
i canFam3.chr16            C 0 C 0

a score=1720969.000000
s hg38.chr7_GL383534v2_alt     90744 551 +    119183 AAAATGAGGAAGTAGTAAAACCCAAG----------------------------------ATTTTTCAAACTCATAAAGTTGGA--GAAAA---ATTCTTCAGGATTGGGACACTGAGAAAAGATGACTTTGG-GAGATAAATCAGCTTGGATTTAGATTCATATAAATTTATGGAGA-TTTTTGGTCATAATAG------tttaatgagaatttactatgtacttgacactatcctaagata--tattac-----aatatatgta----------------atact--------gtatattctcatg-----------------taatatttaaaagaac--------------------------cctgaagagt-gttgccatgatcttca-tcctacagataggaa-aactgaaaggagttca--g----attggcctggggttaTTTACTACCTGGGCAATGAATGATGTTGCTAGTTGGCCAGTAGCGGGAGTGGTTGCTAGACCTGAGCACATAGTCTGAACTAACCAAAATTG----------------------------TCAAAGTTTGACAATTTTGACAAAATCATTTCTCCAGGCTGGTATTTTTGGGAAAAGAAACAGAAAACAAGTATGCTTATTCAGCT-TGAGATGGAAACATTAGCATTCAGACTTTAAGACACATAAA--------GAA------GGGG--GGT---CTT--
s panTro4.chr7             143190643 552 + 161824586 AAAATGAGGAAGTAGTAAAACCCAAG----------------------------------ATTTTTCAAACTCATAAAGTTGGA--GAAAA---ATTCTTCAGGATTGAGACACTGAGAAAAGATGACTTTGG-GAGATAAATCAGTTTGGATTTAGATTCATATAAATTTATGGAGA-TTTTTGGTCATAATAG------tttaatgagaatttactatgtacttgacactatcctaagata--tattat-----aatatatgta----------------atact--------gtatattctcatg-----------------taatatttaaaagaac--------------------------cctgaagagtagttgccatgatcttca-tcctacagataggaa-aactgaaaggagttca--g----attggcctggggttaTTTACTACCTGGGCAATGAATGATGTTGCTAGTTGGCCAGTAGCGGGAGTGGTTGCTAGACCTGAGCACATAGTCTGAACTAACCAAAATTG----------------------------TCAAAGTTTGACAATTTTGACAAAATCATTTCTCCAGGCTGGTATTTTTGGGAAAAGAAACAGAAAACAAGTATGCTTATTCAGCT-TGAGATGGAAACATTAGCATTCAGACTTTAAGACACATAAA--------GAA------GGGG--GGT---CTT--
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139012726 555 + 157549271 AAAATGAGGAAGTAGTAAAACCCAAG----------------------------------ATTTTTCAAACTCATAAAG-TGGA--GAAAA---ATTCTTCAGGATTGGGACACTGAGAAAAGATGACTTTGA-GAGATAAATCAGCTTGGATTTAGATTCATATAAATTTATGGAGA-TTTTTCGTCATAATAG------tttaatgagaatttactatgtacttgacactgtcctaagata--tgttactta-taatatatgta----------------atact--------gaatattctcatg-----------------taatatttaaaagaac--------------------------cctgaagagtaggtgccatgatcttca-tcctacagatgggaa-aactgaaaggagttca--g----attggcctggggttaTTTACTACCTGGGCAATGAGTGATGTTGCTAGTTGGCCAGTAGTGGGAGTGGTTGCTAGACCTGAGCACATAGTCTGAACTAACCAAAATTG----------------------------TCAAAGTTTGACAATTTTGACAAAATCATTTTTCCAGGCTGGTATTTTTGGGAAAAGAAACAGAAAACAAGTATGCTTGTTCAGCT-TGAAATGGAAACATTAGCATTCAGACTTTGAGACACGTAAA--------GAA------AGGG--GGT---CTT--
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93133449 591 + 110113093 AAAATGAGGAAGTAGTAAAACCCAAG----------------------------------ATGTTTCAAACTCATAAAGTTGGA--GAAAA---ATTCTTCAGCATTGGGACACTGAGAAAAGATGACTTTGG-GAGATAAATCGGCTTGGATTTAGACTCATATAAATTTATGGAGA-TTTTTGGTCACAATAG------tttaatgagaatttactatatacttgacactatcctaagatatgtgttactta-taatatatgta----------------atact--------gtatattctcatg-----------------taatatttaaaagaac--------------------------cctgaagagtagttgccatgatcttca-tcctacagatgggaa-aactgaAAGGAGTT-A--G----ATTGGTCTGGGATTATTTACTACCTGGGCAATGAGTGATGTTGCTAGTTGGCCAGTAGTGGGAGTGGTTGCTAGACCTGAGCACATAGTCTGAACTAACCAAAATTGTCAAAGTTTGACAATTTTGACAAAATCATCAAAGTTTGACAATTTTGACAAAATCATTTCTCCAGGCTAGTATTTTTGGGAAAAGAAACAGAAAGCAAGTTTGCTTATTCAGCT-TGAGATGGAAACATTAACATTCTTACGCTGAGACACGTAAA--------GAAGGGCAGGGGG--GGT---CTT--
i nomLeu3.chr13            C 0 I 349
s rheMac3.chr3             181027790 558 + 198365852 AAAATGAGGAAGTAGTAAAACTCAAG----------------------------------ATTTTTCAAACTCATAAAGTTGGA--GAAAA---ATTCTTCAGGATTGGGACACTGAGAAAAGGTGACTTTGG-AAGATAAATCAGTTTGGATTTAGACTGATATAAATTTATGGAGATTTTTTGGTCATAATAG------tttaatcagaatttactatgtacttgacactatcctaaggtacgtgttatgtg-tactatatgta----------------atact--------gtatattatcatg-----------------taatgtttaaaagaac--------------------------cctgaagagtagttgccatgatcttca-tctcacagatggaaa-aactgaaaggagttca--g----aTTGACCTGGGGTTATTTACTAACTGGGCAATGAGTGATGTTGCTAGTTAGCCAGTAGTGGGAGTGGTTGCTAGACCTGAACACATAGTCTGAACTAACTAAAATTG----------------------------TCAAAGTTTGACGATTTTGACAAGATCATTTCTACAGGCTGGT-TTTTTGGGAAAAGAAACAGAAAACAAGTATGCTTATTCAGCT-TGAGATGGAAACATTAGCATTCCGACTTTGAGACACGTAAA--------GAA------GAGG--GGT---CTT--
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174775890 558 + 192294377 AAAATGAGGAAGTAGTAAAACTCAAG----------------------------------ATTTTTCAAACTCATAAAGTTGGA--GAAAA---ATTCTTCAGGATTGGGAGACTGAGAAAAGGTGACTTTGG-AAGATAAATCAGTTTGGATTTAGACTGATATAAATTTATGGAGATTTTTTGGTCATAATAG------tttaatcagaatttactatgtacttgacactatcctaaggtacgtgttatgtg-tactatatgta----------------atact--------gtatattatcatg-----------------taatatttaaaagaac--------------------------cctgaagagtagttgccatgatcttca-tctcacagatggaaa-aactgaaaggagttca--g----aTTGACCTGGGGTTATTTACTAGCTGGGCAATGAGTGATGTTGCTAGTTAGCCAGTAGTGGGAGTGGTTGCTAGTCCTGAACACATAGTCTGAACTAACTAAAATTG----------------------------TCAAAGTTTGACGATTTTGACAAGATCATTTCTACAGGCTGGT-TTTTTGGGAAAAGAAACAGAAAACAAGTATGCTTATTCAGCT-TGAGATGGAAACATTAGCATTCCGACTTTGAGACACGTAAA--------GAA------GAGG--GGT---CTT--
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163444398 556 + 180432695 aaaatgaggaagtagTAAAACTCAAG----------------------------------ATTTTTCAAACTCATAAAGTTGGA--GAAAA---ATTCTTCAGGATTGGGACACTGAGAAAAGGTGACTTTGG-AAGATCAATCAGTTTGGATTTGGACTGATATAAATTTATGGAGATTTTTTGGTCATAATAG------TTTAATCAGAATTTACTATGTACTTGACATTATCCTAAGGTACGTGTTATGTG-TACGATATGTA----------------ATACT--------GTATATTATcatg-----------------taatatttaaaagaac--------------------------CCTGAAGAGTAGTTGCCATGATCTTCA-TCTCACAGATGGAA-----TGAAAGGAGTTCA--G----ATTGACCTGGGGTTATTTGCTAGCTGGGCAATGAGTGATGTTGCTAGTTGGCCAGTAGTGAGAGTGGTTGCTAGACCTGAACACATAGTCTGAACTAAACAAAATTG----------------------------TCAAAGTTTGACGATTTTGACAAGATCATTTCTCCAGGCTGGT-TTTtagggaaaagaaacagaaaacaagtatGTTTATTCAGCT-TGAGATGGAAACATTAGCAATCCGACTTTGAGACATGTAAA--------GAA------GGGGGAGGT---CTT--
i papAnu2.chr3             I 304 C 0
s chlSab2.chr21            110472850 553 + 127223203 AAAATGAGGAAGTAGTAAAACCCAAG----------------------------------ATTTTTCAAACTCATAAAGTTGGA--GAAAA---ATTCTTCAGGATTGGGATACTGAGAAAAGGTGACTTTGG-AAGATCAATCAGCTTGGATTTAGACTGATATAAATTTATGGAGATTTTTTGGTCAGAATAG------TTTAATCAGAATTTACTATG-ACTTGACACTATCCTAaggtacgtgttatgtg-tactatatgta----------------atact--------gtatatgatcatg-----------------taatatttaaaagaac--------------------------cctgaagagtagttgccatgatcttca-tctcacagatggaa-----tgaaaggagttca--g----aTTGACCTGGGGTTATTTGCTAGCTGGGCAATGAGTGATGTTGCTAGTTGGCCAGTAGTGAGAGTGGTTGCTAGACCTGAACACATAGTCTGAACTAACCAAAATTG----------------------------TCAAAGTTTGACGATTTTGACAAGATCATTTCTCCAGGCTGGT-TTTTTGGGAAAAGAAACAGAAAACAAGTATGCTTATTCAGCT-TGAGATGGAAACATTAGCATTCCGACTTTGAGACACGTAAA--------GAA------GGGA--GGT---CTT--
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23817015 530 - 128169293 AAAAT------GTAGTAAAACCCAAG----------------------------------ATTTTTGAAAGTCATAAAGTTGGA--GAAAA---ATTATTCATGATTGGGACACTGAAAAAAGATGACTTTGG-GAGCTAAATCAGCTTGGATTTATATTCATATAAATTTATGGAGA-TTTTTGGTCATAATAG------TTTAATGAGAATTTACCATGTACTTGACACTATCTTTAGctatgtgttacgca-taacatttgta----------------atgct--------gtatattctcatg-----------------tcatagttaaaagaac--------------------------tctgaggaatagttgctatgatcttca-tcttacagatgggaa-aactgaagGGAGTTCA--G----ATTGGCCTGGGGTTATTTACTCACTGGGCAATGAGTGATGCTGCTACTTGGCCAGTAGTGGGAGTGGTTGCTAGACCTGAGCACATATTCTGAACTAGCC---------------------------------------AGTTTGACAATTTTGACAAAATCAGTTTTCCAGACTGG--TTTTTGGGAAAAGAAACAGAAAACAAATGTGTCTATTCAAATGTGAGATGGAAATGTTAGCATTTAGACGTCG----------A--------GAA------GGGG--GGT---CTT--
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40454157 582 + 149736546 -AAATCAT---CTAGGAATAGCTGTGtttttttccttctttctttctttctttctttttttttttTTAATTTGCTAAAGTTAGA--TGAAAATCATTCTTGGTAATTGGGACATT-AAAAAAGATGACACTGGAGAGAGAAATCATCTTAAATTT------ATGTATAGTTATAGATA--TTTTGATCATAATAA------TAGACTGTAAAATTCCCAAGTG-TTGACATTATACTAAGATAACTGTGATATATTGATATATATAACATATATCAACATACATAAT--------ATATGTCAACATGCATAAACACAAATACAATGATATGTTATAAAACGCTGTATATTGTGACATATTAATGTACTTGAGAAGTCATTGCTATGAATTTCA-TGTTATAAACAGAAACCGCT-----GTGTTCAGTG----ATTTCCCTGAGATGATTTACTAGC-----------CGATACTACCAGCTGGCCACTAGGGGGAGTTATT------TCTGAGCTCAGGTGACGGATTAAT------------------------------------TCA---TTCAACAATTTTG----------TTTCCCAGACTAAGACGGCTGTGAAAACAAATTGAAA-TAAGAAAATATACTCAACA-CGAGGTGCAAACA-CAGCACTCAGGCCTTGGAACA----------------------------------------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52150707 561 -  59632846 -AAACGAGGAACTAGTAAGGGTCAGG----------------------------------ATTGTTTAAACTC--AAAGTTAGATGAAAAA---ATTCTTGCTAACGGGGACATTAGGAAAGGATGACTTCA--CAGATAAATTAATTTGGATTGAGATTCATATAAATTCATGGAGA--TTTTTGTCATCTTagctaccatttcctgataatttactgtgtgcttggcattgagctaagtta-----cacaca-cacccaaccca----------------ctcctccccccacacgttttctcatg-----------------taatattcaaaagcac--------------------------cccaaggagtggttgctaagatgctcactactttagatcagga-aactaataagagttca--gtgacttttgcctagggttacctactagctgagtaatgagagaTGTTGCTGGTCAGCCAGTAGGTGGAGGGCTTGTTATACCTAAGCACATAAACTAAAATAA-------------------------------------TCAA--TTTGACAATTTAG----------TTCTCTAGACTAAGATTTTTTAGGAAGCAAATTGAACACAAATAAGTTTATTCAATT-TGAGATGGAAACACTAGCAGCCAGAGTGTGATCTAAGTAGACCAGAGTCAAA------GGGA--GGTGCCCTTTT
i canFam3.chr16            C 0 C 0

a score=2903086.000000
s hg38.chr7_GL383534v2_alt     91295 761 +    119183 TCATTTCTTTTAATTTGCTCCACCCAGGTCCCAGTTATTCTTTGAACTAA-GGACAGTAGCTCTGGGAGTGAGAAGTT-----GTGTCCCCT-TAGGAACATGTAGAAAAGAACAGTATGCCCAGATAGAGAAAAGAATATT----------------GAAA-------AATAAGTGAGAAT--TGTCAGTATAGGGTTGTACAGAAGGTTACAAAGAAAACAAAGAAGATAGT------CAGCAATTGGGGAGATTCTTGCTACCATGAATATTGACCCAAGTAGAATTCATTGCAGTCACCTCAAAAGTCTTTTTGAAAACTTGGAGCAACTTAGG-ACTGTAATACTGTTTAATTTTATTGC-TTACAACATGGTAGAATTACTCTAATTTCCTTTTTATTAAAATACTTTAGAGATGTGTTTTACGAGAAACCAACATGGCTTCCCGCTATGAAAAAGAATTCTTGGAGGTTGAAAAAATTGGGGTTGGCGAATTTGGTACAGTCTACAAGTGCATTAAGAGGCTGGATGGATGTGTTTATGCAATAAAGCGCTCTATGAAAACTTTTACAGAATTATCAAATGAGTGAGTACC-TTTGAAATGCACTAAAAATATAAACTTAGATTTGGAGAGTTGTTTCTTGTCAAATTATTTTAAA-TTAAAGCACCGATGTC----ATTAAAAATCATTTG--TGTTTTAAAAT-CACCCC--ACATTATATGTTATCTCATATTCATAACCTTTCTGAGTTTTCCAGCTCAGAGAT--GTTACTTCCTAAAATACAACACGATCATTTTAG----ATCA
s panTro4.chr7             143191195 760 + 161824586 TCATTTCTTTTAATTTGCTCCACCCAGGTCCCAGTTATT-TTTGAACTAA-GGACAGTAGCTCTGGGAGTGAGAAGTT-----GTGTCCCCT-TAGGAACATGTAGAAAAGAACAGTATGCCCAGATAGAGAAAAGAATATT----------------GAAA-------AATAAGTGAGAAT--TGTCAGTATAGGGTTGTACAGAAGGTTACAAAGAAAACAAAGAAGATAGT------CAGCAATTGGGGAGATTCTTGCTACCATGAATATTGACCCAAGTAGAATTCATTGCAGTCACCTCAAAAGTCTTTTTGAAAACTTGGAGCAACTTAGG-ACTGTAATACTGTTTAATTTTATTGC-TTACAACATGGTAGAATTACTCTAATTTCCTTTTTATTAAAATACTTTAGAGATGTGTTTTACGAGAAACCAACATGGCTTCCCGCTATGAAAAAGAATTCTTGGAGGTTGAAAAAATTGGGGTTGGCGAATTTGGTACAGTCTACAAGTGCATTAAGAGGCTGGATGGATGTGTTTATGCAATAAAGCGCTCTATGAAAACTTTTACAGAATTATCAAATGAGTGAGTACC-TTTGAAATGCACTAAAAATATAAACTTAGATTTGGAGAGTTGTTTCTTGTCAAATTATTTTAAA-TTAAAGCACCGATGTC----ATTAAAAATCATTTG--TGTTTTAAAAT-CACCCT--ACATTATATGTTGTCTCATATTCATAACCTTTCTGAGTTTTCCAGCTCAGAGAT--GTTACTTCCTAAAATACAACACGATCATTTTAG----ATCA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139013281 752 + 157549271 TAATTTCTTTTAATTTGCTCCACCCAGGTCCCAGCTATTCTTTGAACTAAGGGACAGTAGCTCTG---GTGAGAAGTT-----GTGTCCCCT-TAGGAACATGTAGAAAAGAACAGTATGCCCAGATAGAGAAAAGAATATT----------------GAAA-------AATAAGTGAGAAT--TGTCAGTACAGGGTTGTACAGAAGGTTACAAAGAAAACAAAGAAGATAGT------CAGCAGTTGGGGAGATTCTTGCTACCATGAATATTGACCCAAGTAGAATTCATTGCAG-----TCAAAAGTCTTTTTGAAAACTTGGAGCAACTTAGG-ACTGTAATACTGTTTAATTTTATTGC-TTACAACATGGTAGAATTACTCTAATTTCCTTTTTATTAAAATACTTTAGAGATGTGTTTTACGAGAAACCAACATGGCTTCCCGCTATGAAAAAGAATTCTTGGAGGTCGAAAAAATTGGGGTTGGCGAATTTGGTACAGTCTACAAGTGCATTAAGAGGCTGGATGGATGTGTTTATGCAATAAAGCGCTCTATGAAAACTTTTGCAGAATTATCAAATGAGTGAGTACC-TTAGAAATGCACTAAAAGTATAAACTTAGATTTGGAGAGCTGTTTCTTGTCAAATTATTTTAAA-TTAAAGCACCGATGTC----ACTAAAAATCATT----TGTTTTAAAAT-CACCCC--ACGTTATATGTTGTCTCATATTCATAACCTTTCTGAGTTTTCCAGCTCAGAGAT--GTTACTTCCTAAAATATAACATGATCATTTTAG----ATCA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93134389 760 + 110113093 TCATTTCTTTTAATTTGCTCCACCCAGGTCCCAGCTATTCTTTGAACTAA-GGGCAGTAGCTCTGGGTGTGAGAAGTT-----GTCTCCCCT-TAGGAACATGTAGAAAAGAACAGTATGCCCAGATAGAGAAAAGACTATT----------------GAAA-------AATAAGTGAGAAT--TGTCAGTATAGGGTTGTACAGAAGTTTACAAAGAAAACAAAGAAGATAGT------CAGCAATTGGGGAG-TTCTTGCTACCATGAATATTGACCCAGGTAGAATTCATTGCAATCACCTCAAAAGTCTTTTTGAAAACTTGGGGCAATTTAGG-ACTGTAATATTGTTTAATTTTATTGC-TTACAACATGTTAAAATTACTCTAATTTCCTTTTTATTAAAATACTTTAGAGATGTGTTTTACGAGAAACCAACATGGCTTCCCGCTATGAAAAAGAATTCTTGGAGGTCGAAAAAATTGGGGTTGGCGAATTTGGTACAGTCTACAAGTGCATTAAGAGGCTGGATGGATGTGTTTATGCAATAAAGCGCTCTATGAAAACTTTTACAGAATTATCAAATAAGTGAGTACC-TTTTAAATGCACTAGAAGTATAAACTTAGATTTGGAGAGCTGTTTCTTGACAAATTATTTTAAA-TTATAGCACTGATGTC----ATTAAAAATCATTTG--TGTTTTAAAAT-CACCCC--ACATTATATGTTGTCTCATATTCATAACCTTTCTGAGTTTTCCAGCTCAGAGAG--GTTACTTCCTAAAATATAACATGATCATTTTAG----ATCA
i nomLeu3.chr13            I 349 C 0
s rheMac3.chr3             181028348 763 + 198365852 TCATTTCTTTTAATTTGCTCCACCCAGGTCCCAGTTATTTTTTGAACTAA-GGACAGTAGCTCTGGGTGTGAGAAGTT-----GTGTCCCCT-TAGGAACATGTAGAAAAGAACAGTATGCCCAGATAGAGAAAAGAATATT----------------GAAA-------AATAAGTGAGAAT--TGTCAGTATAGGGTTGTACAGAAGGTTACAAAGAAAACAAAGAAGATAGT------CAGCAATTGGGCAGATTCTTGCTACCATGAATATTGACACAGGTAGAATTCATTGCAATCACCTCAAAAGTGTTTTTGAAAACTTGGAGCAATTTAGG-ACTGTAATACTGTTTAATTTTATTGCTTTACAACATGTTAGAATTACTCTAATTTCCTTTTTATTAAAATACTTTAGAGATGTGTTTTAAGAGAAACCAACATGGCTTCCCGCTACGAAAAAGAATTCTTGGAGGTGGAAAAAATTGGTGTTGGCGAATTTGGTACAGTCTACAAGTGCATTAAGAGGCTGGATGGATGTGTTTACGCAATAAAGCGCTCTATGAAAACTTTTGCAGAATTATCAAATGAGTGAGTACC-TTTGAAATGCACTAAAAGTATAAACTTAGATTTGGAGAGCTGTTTCTTGTCAAATTATTTTGAATTTATAGCATCGATGTT----GTTAAAAATCATTTG--TATTTTAAAAT-CACCCC--ACATTACATGTTGTCTCATATTCATAACCTTTCTGAGTTTTCCAGCTCAGAGAT--GTTACTTCCTAAAATATAACATGATCATTTTAG----ATCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174776448 759 + 192294377 TCATTTCTTTTAATTTGCTCCACCCAGGTCCCAGTTATTTTTTGAACTAA-GGACAGTAGCTCTGGGTGTGAGAAGTT-----GTGTCCCCT-TAGGAACATGTAGAAAAGAACAGTATGCCCAGATAGAGAAAAGAATATT----------------GAAA-------AATAAGTGAGAAT--TGTCAGTATAGGGTTGTACAGAAGGTTACAAAGAAAACAAAGAAGAT----------AGCAATTGGGCAGATTCTTGCTACCATGAATATTGACACAGGTAGAATTCATTGCAATCACCTCAAAAGTGTTTTTGAAAACTTGGAGCAATTTAGG-ACTGTAATACTGTTTAATTTTATTGCTTTACAACATGTTAGAATTACTCTAATTTCCTTTTTATTAAAATACTTTAGAGATGTGTTTTAAGAGAAACCAACATGGCTTCCCGCTACGAAAAAGAATTCTTGGAGGTGGAAAAAATTGGTGTTGGCGAATTTGGTACAGTCTACAAGTGCATTAAGAGGCTGGATGGATGTGTTTACGCAATAAAGCGCTCTATGAAAACTTTTGCAGAATTATCAAATGAGTGAGTACC-TTTGAAATGCACTAAAAGTATAAACTTAGATTTGGAGAGCTGTTTCTTGTCAAATTATTTTGAATTTATAGCATCGATGTT----GTTAAAAATCATTTG--TATTTTAAAAT-CACCCC--ACATTACATGTTGTCTCATATTCATAACCTTTCTGAGTTTTCCAGCTCAGAGAT--GTTACTTCCTAAAATATAACATGATCATTTTAG----ATCA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163444954 762 + 180432695 TCATTTCGTTTAATTTGCTCCACCCAGGTCCCAGCTATTCTTTGAACTAA-GGACAGTAGCTCTGGGTGTGAGAAGTT-----GTGTCCCCT-TAGGAACATGTAGAAAAGAACAGTATGCCCAGATAGagaaaagaatatt----------------gaaa-------aataagTGGGAAT--TGTCAGTATAGGGTTGTACAGAAggttacaaagaaaacaaagaagatagT------CAGCAATTGGGGAGATTCTTGCTACCATGAATATTGACACAGGTAGAATTCATTGCAATCACCTCAAAAGTGTTTTTGAAAACTTGGAGCAATTTAGG-ACTgtaatattgtttaattttattgc-ttACAACATGTTAGAATTactctaatttcctttttattaaaatactttagaGATGTGTTTTAAGAGAAACCAACATGGCTTCCCGCTACGAAAAAGAATTCTTGGAGGTGGAAAAAATTGGTGTTGGCGAATTTGGTACAGTCTACAAGTGCATTAAGAGGCTGGATGGATGTGTTTATGCAATAAAGCGCTCTATGAAAACTTTTGCAGAATTATCAAATGAGTGAGTACC-TTTGAAATGCACTAAAAGTATAAACTTAGATTTGGAGAGCTGTTTCTTgtcaaattattttgaatttatagcATCGATGTC----gttaaaaatcatttg--tattttaaaat-cacccC--ACATTACATGTTGTCTCATATTCATAACCTTTCTGAGTTTTCCAGCTCAGAGAT--GTTACTTCCTAAAATATAACATGATCATTTTAG----ATca
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110473403 763 + 127223203 TCATTTCTTTTAATTTGCTCCACCCAGGTCCCAGCTATTCTTTGAACTAA-GGACAGGAGCTCTGGGTGTGAGAAGTT-----GTGTCCCCT-TAGGAACATGTAGAAAAGAACAGTATGCCCAGATAGAGAAAAGAATATT----------------GAAA-------AATAAGTGAGAAT--TGTCAGTATAGGGTTGTACAGAAGGTTACAAAGAGAACAAAGAAGATAGT------CAGCAATTGGGGAGATTCTTGCTACCATGAATATTGACACAGGTAGAATTCATTGCAATCACCTCAAAAGTGTTTTTGAAAACTTGGAGCAATTTAGG-ACTGTAATATTGTTTAATTTTATTGC-TTACAACATGTTAGAATTACTCTAATTTCCTTTTTATTAAAATACTTTAGAGATGTGTTTTAAGAGAAACCAACATGGCTTCCCGCTACGAAAAAGAATTCTTGGAGGTGGAAAAAATTGGTGTTGGTGAATTTGGTACAGTCTACAAGTGCATTAAGAGGCTGGATGGATGTGTTTATGCAATAAAGCGCTCTATGAAAACTTTTGCAGAATTATCAAATGAGTGAGTACCTTTTGAAATGCACTAAAAGTATAAACTTAGATTTGGAGAGCTGTTTCTTGTCAAATTATTTTGAATTTATAGCATCGATGTT----GTTAAAAATCATTTG--TATTTTAAAAT-CACCCC--ACATTACATGTTGTCTCATATTCATAACCTTTCTGAGTTTTCCAGCTCAGAGAT--GTTACTTCCTAAAATATACCATGATCATTTTAG----ATCA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23817545 760 - 128169293 TTATTTCTTTTAATTTGCTCCACCCAGGTCCCAGCCATTCTTTGAACTGA-GGACAGTAGCTCTGGGTGTGAGAAGTT-----GTGCCCCCT-TAGGAACATGTAGAAAAGAACAGTAGGCCCAGATAGAGAAAAGAATGTT----------------GAAA-------AATATGTAAGACT--TGACAGTATAGAGTT-TATGGAAGGTTGCAAAGAAAACAAAAAAGATTCTTGCTACCATGAATTGGGGAGATTCTTGCTACCATGAATATTGACACAGGTAGAATTCATTGCATTTGCATCAAAAGTCTTTTTGAAAACTTGGAGCAATTTAGG-ACTATAATATTGTTTAATTTTATTGC-TTACAACTTGTTAGAATTATTCTAATTTGCTTTTTATTAAAATATTTTAGAGATGTGTTTTACGAGAAACCAACATGGCTTCCCGCTATGAAAAAGAATTCTTGGAGGTAGAAAAAATTGGGGTTGGTGAATTTGGTTCGGTCTACAAATGCATTAAGAGGCTGGATGGATGTGTTTATGCAATAAAGCGCTCTATGAAAACTTTGGCGGAATTATCAAGCGAGTGAGTACC-TTTGAAATGCACTATAAGCATAAACTTAAATTTGGAGAGTTGTTTCTCGTCAAATTATTTTGAA-ATATAGCTCTGCTATC----ACTAAAAATCATT------TTTAAAAAC-TTCCCT--GCATTATATGTTGTCTCATATTCATAACATTTCTGAGTTTTCTAGCTT--AGAT--GTTCCTTCTCAAAATATAACATCATCATTTTAG----ATCA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40454739 726 + 149736546 ---------------TGCTTCACCT-GTTTCCTGTTAGTCCTCTAGCTGA-GGACAGTAGCTCTGGGTTTCAGAAGCTGATGGGTCTCCCCC--------------ATCAGAGCAGTCTGACCAGATGGAGGAAAGAACATTTaaaaaaaaaaaaaaaaaaa-------aaaaaGTGGTCAG--GGGCAGCACTGACTTGT----AAGGCTACAAAGGACATA---GGTGTGGC------CAGCCATT-GGCAAACTCTTCCTGCTAC-----------------GAACCCATTGCCTTTCCTT------TCATTTTAAAAA------GCAATTTAGGAAATGCAATATAACTCTATTTTATTGC-TCACAGAATATAGGAAGAGTTATTCTCTCTCTTTTCTTTAAATATTTTAGAGAAGTATTCTACAAGAAACTAATATGGCTTCCCGCTATGAAAAAGAATTCTTCGAGATAGAAAAAATCGGGGTTGGAGAATTTGGGACAGTCTACAAGTGCATTAAGAGGCTGGATGGATGCATTTATGCAATAAAGCGCTCTGCAAAGTCCTTTTCAGGATTATCAAATGAGTGAGTACC-TTTGAAAAGTATTGGATGAACAGGCTTGGATTTGGTAACTTATTGGTTCTCCAAGTAGTTTCTA-AAAGAACACCAATATCAATGACTACACACCATTTGCTTGTTTTTAAATGTATCCTTACCATTGGGTGTCATTTTATATTCATAGCTTTACCAAGTTGTCCAGAACACCAAT--CGCATTTCCTAAGAGAGAACATGATGATTTCAG----ATCA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52151268 763 -  59632846 TTTTTTTTCTTAATATATTCTACCTGGATCTCAGCCATTCCTTTAGGAGA-GGACAGTAGCTGTTGCAGTGAGCAAGT-----GCGTCCCCTCTAAAAACCTATTGAGAAGAAGAATAT-CCCAGACAGAAGAAATAACATA----------------GAAAAAGACTTAATATATGAAAACAATAACAGTGCAGAGTTGTTTAGACAGTTATGAAGAATACAGAGAAGGTAGT------CAGCAATTGGGGTGGTTCTTGCTACCATGAATACTGACACAAACAGAATCCAATAGATTGGCCTCAAAAGTCTTTTTGAAAACATACAGAAATTTTTG------AATATGCCTTAAGTTTATTAC-TCACAATATGTTAGaattattttaat----attttaataaaatatttCAGAGATGTGTTCTACGAGAAACCAATATGGCTTCCCGCTATGAAAAAGAATTCTTGGAGGTAGAAAAAATTGGAGTTGGGGAATTTGGTACAGTCTACAAGTGTATTAAGAGGCTGGATGGATGTGTTTATGCAATAAAACGGTCCATGAAACCTGTTGCAGGATTATCAAATGAGTAAGTACC-TTTGAAATGTACTAGAAGTGCACACTTGGATTTGGAAAGTTGTTTCTTGTCAAAACATTTTAAA-TAATAGTACTGATGTC----ACCAAAAAT-ATACC--TGTTGCTA----CCCTCT--CTATTATATGTGGTCTCACATTCATAAACTTTCTGAATTTTTCTAATCAGAGATCAGTTACTTCCCAAAACATACCATGACCATTTGGGTGCAATCA
i canFam3.chr16            C 0 C 0

a score=409715.000000
s hg38.chr7_GL383534v2_alt     92056 217 +    119183 TGAtgt----------------gtttttgtttgtttgtttgtt-----------------ttctgtcaccaggctagagtgcagtggtgtgatcttggctcactgcaatctccacctcctgggttcaagtg-------------attctcctgcttcagcctcctgagtagctgggactacaggcgcgcaccactacacctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggatggtcttgat
s panTro4.chr7             143191955 213 + 161824586 TGATGT----------------GTTTTTGTTTGTTTGTTT---------------------tctgtcaccaggctagagtgcagtggtgtgatcttggctcactgcaatctccacctcctgggttcaagtg-------------attctcctgcttcagcctcctgagtagctgggactacaggcgcgcaccactacacctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggatggtctcgat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139014033 216 + 157549271 TGATGT----------------GTTTTTGTTTGTTTGTTTGTT-----------------Ttctgtcaccagg-tagagtgcagtggtgtgatcttggctcactgcaatttccacctcctgggttcaagtg-------------attctcttgcttcagcctcctgagtagctgggactacaagcgcacaccaccacacctggctaatttttatatttttagtagagacagggtttcatcatgttggccaggatagtctcgat
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93135149 244 + 110113093 TGATGT----------------Gtttctgtttgtttgttttct---gtgacagagtctcgctctgtcaccaggctagagtgcagtggtgcgatcttggctcactgcaatctccacctcccgggttcaagtgattctcctgcttcattctcctgcttcagcctcctgagtagctgggactacaggcacgcaccaccacacccggctaatttttgtatttttagtagagacggagtttcaccatgttggccaggattgtctcaat
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181029111 250 + 198365852 TGATGCTTTTCTTTATTCTTTAAtttttatttatttatttttttctgtgatggaatctcggtctgtcaccaggctagagtgcagtggtgcaatcttggctcacagcaatctccacctcccgggatcaagca-------------attctcctgcgtcagcctcctgagtagctgggactacaggcatgcaccaccacacctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcgat
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174777207 249 + 192294377 TGATGCTTTTCTTTATTCTTTAAtttttatttatttatttttttctgtgatggagtctcggtctgtcaccaggctagagtgcagtggtgcaatcttggctcacagcaatctccacctcccgggatcaagca-------------attctcctgcgtcagcctcctgagtagctgggactacaggcatgcaccaccacatctggctaa-ttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcgat
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163445716 250 + 180432695 tgatgtttttctttattttttaatttgtatttatttatttttttctgtgatggagtctccgtctgtcaccaggctagagtgcagtggtgagatcttggctcacagcaatctccacctcccgggatcaagca-------------attctcctgcttcagcctcctgagtagctgggactacaggcatgcaccaccacacctggctaatatttgtatttttagtagagacggggtttcaccatattggccaggatggtctcgat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110474166 250 + 127223203 TGATGTTTTTCTTTAttttttaatttgtatttatttatttttttctgtgatggagtctcggtctgtcaccaggctagagtgcagtggtgagatcttggctcacagcaatctccacctcccgggatcaagca-------------attctcctgtttcagcctcctgagtagctgggactacaggcatgcaccaccacacctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcgat
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40455465  78 + 149736546 ---TGTT---------------GTTTGTACTTa-----------------------------------------tagggt------------------ctcac----------------------catata-------------a--cttttgc--------------tagcctaga--------------------acccg----------------ctagtaaag---------------------caggttggccttgac
i mm10.chr6                C 0 C 0
s canFam3.chr16             52152031  47 -  59632846 TGTTGT----------------GTTTTT----------------------------------------------------------------TCATGGCTC------------------------CTAAGA-------------CTTTTCCTAC---------------------------------------------------------------------------------------------------TGGTCTTACT
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23818305   0 - 128169293 C

a score=176551.000000
s hg38.chr7_GL383534v2_alt     92273 93 +    119183 ctcttgaccttgtgatctgcctgccgtggcctcccaaagtgctgggattacaggcgtgagccactgcacctggccaatcatgatgtgg-----tgttt
s panTro4.chr7             143192168 93 + 161824586 ctcttgaccttgtgatctgcctgccttggcctcccaaagtgcggggattacaggcgtgagccactgcacctggccAATCATGATGTGG-----tgttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139014249 98 + 157549271 ctcttgaccttgtgatctgcctgccttggcctccccaagtgctgggattacaggcatgagccactgcacctggccAATCATGATGTGGtgttttgttt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93135393 87 + 110113093 ctcttgaccttgtgatctgcctg-----------caaagtgctgggattacaggcgtgagccaccgcacctggccAATCATGATGTGGCttttttttt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181029361 92 + 198365852 ctcttgatctcatgatctgcctgccttggcctcccaaagtgctgggattacaggtgtga------gcACCTGGCTGATCATGATGTGTTTGTGTTTTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174777456 92 + 192294377 ctcttgatctcgtgatctgcctgccttggcctcccaaagtgctgggattacaggtgtga------gcACCTGGCTGATCATGAtgtgtttgtgttttt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163445966 92 + 180432695 ctcttaatctcgtgatctgcccgccttggcctcccaaagtgctgggattacaggcgtga------gcacctgGCTGATCatgatgtgtttgtgttttt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110474416 92 + 127223203 ctcttgatctcgtgatctgcccgccttggcctcccaaagtgctgggattacaggcctga------gcACCTGGCTGATCATGATGTGtttgtgttttt
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40455543 67 + 149736546 ctc-------agagatctgtttatctc------------cactggcattaaaagcatgt------actaccaACCAG-CATGCTGCTGTTGTT-----
i mm10.chr6                C 0 C 0
e canFam3.chr16             52152078  0 -  59632846 C
e calJac3.chr8              23818305  0 - 128169293 C

a score=24749.000000
s hg38.chr7_GL383534v2_alt     92366 22 +    119183 tgt-tttgttttgttttt----ttgtg
s panTro4.chr7             143192261 21 + 161824586 tgt-tttgttttgttttT----T-GTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139014347 22 + 157549271 tgt-tttgttttgttttT----TTGTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93135480 22 + 110113093 ttt-tttttttttttttt----ATGTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181029453 26 + 198365852 TTG-TTTTTGTTGCTTTTGTTCTTGTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174777548 26 + 192294377 ttg-tttttgttgcttttgttcttgtG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163446058 27 + 180432695 ttgtttttttttgtttttgtgcttgTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110474508 26 + 127223203 ttg-ttttttttgtttttgttcttGTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23818305 22 - 128169293 -----TGTTTTTGTGTGTGTGTGTGTG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40455610 21 + 149736546 TGA-ATTTCTTGGCTTTT----CTGT-
i mm10.chr6                C 0 C 0
e canFam3.chr16             52152078  0 -  59632846 C

a score=656412.000000
s hg38.chr7_GL383534v2_alt     92388 210 +    119183 GCTTTTACTTTCTACTGCTGGTCTTTCTGACTT---------------TTTAAAAAATGAATAGATTTGTGGAATTGTCCTCT-GGTGTCTGTTTCA-TTTATCAGAAATATTACCAAATAGAAAGTTATTATAAAGTCACTGGTTTATCTTTACTTTACA-----TTAAC--AATGAATTCAATAGTAAA------GTTTCAGAGACTACATGCAAGGGAAAATGA----AAGTTT--GTTTGAT
s panTro4.chr7             143192282 210 + 161824586 GCTTTTACTTTCTACTGCTGGTCTTTCTGACTT---------------TTTAAAGAATGAATAGATTTGTGGAATTGTCCTCT-GGTGTCTGTTTCA-TTTATCAGAAATATTACCAAATAGAAAGTTATTATAAAGTCACTGGTTTATCTTTACTTTACG-----TTAAC--GATGAATTCAATAGTAAA------GTTTCAGAGACTACATGCAAGGGAAAATAA----AAGTTT--GTTTGAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139014369 204 + 157549271 GCTTTTACTTTCTACTGCTGGTCTTT----CTT---------------TTTAAAAAATGAATAGATTTGTGGAATTGTCCTCT-GGTGTCTGTTTCA-TTTATTAGAAATATTACCAAATAGAAAGTTATTATAAACTCACTGGTTTATCTTTACTTTACG-----TTAAC--AATGAATTCAATAGTAAA------GTTTCAGAGACTACATGCAAGGGAAAAT------AAGTTT--GTTTGAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93135502 210 + 110113093 GCTTTTACTTTCTACTGCTGGTCTTTCTGACTT---------------TTAAAAAAATGAATAGATTTGTGGAATTGTCCTCT-GGTGTCTGTTTCA-TTTATCAGAAATATTACCAAATACAAAGTTATTATAAACTCACTGGTTTATCTTTACTTTATG-----TTAAC--AATGAATGCAATAGTAAA------GTTTCAGAGACTACATGCATGGGAAAATAA----AAGTTT--GTTTGAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181029479 215 + 198365852 GCTTTTACTTTCCACTGCTGGTCTTTCTGACTT----aaaaaaaaaaaaaaaaaaaaagaaTAGATTTGTGGAATTGTCCTCT-GGTGTCTGTTTCA-TTTATCAGAAATATTACCAAATAGAAAGTTATTATAAACTCACTGGTTTATCTTTACTTTATG-----TTAAC--AATGAATTCAATAGTAAA------GTTTCAGAGACTGCATGCAAGGGAAAATAA------------GTTTGAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174777574 216 + 192294377 GCTTTTACTTTCCACTGCTGGTCTTTCTGACTT---aaaaaaaaaaaaaaaaaaaaaagaaTAGATTTGTGGAATTGTCCTCT-GGTGTCTGTTTCA-TTTATCAGAAATATTACCAAATAGAAAGTTATTATAAACTCACTGGTTTATCTTTACTTTATG-----TTAAC--AATGAATTCAATAGTAAA------GTTTCAGAGACTGCATGCAAGGGAAAATAA------------GTTTGAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163446085 209 + 180432695 GCTTTTACTTTCCACTGCTGGTCTTtctgactt----------aaaagaaaaaaaaaagaatagatttgtGGAATTGTCCTCT-GGTGTCTGTTTCA-TTTATCAGAAATATTACCAAATAGAAAGTTATTATAAACTCACTGGTTTATCTTTACTTTATG-----TTAAC--AATGAATTCAATAGTAAA------GTTTCAGAGACTACATGCAAGGGAAAATAA------------GTTTGAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110474534 219 + 127223203 GCTTTTACTTTCCACTGCTGGTCTTTCTGACTTTaaaaaaaaaaaaaaaaaaaaaaaagaaTAGATTTGTGGAATTGGCCTCT-GGTGTCTGTTTCA-TTTATCAGAAATATTACCAAATAGAAAGTTATTATAAACTCACTGGTTTATCTTTACTTTATG-----TTAAC--AATGAATTCAATAGTAAA------GTTTCAGAGACTACATGCAAGGGAAAATAA------------GTTTGAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23818327 215 - 128169293 GCTTTCACTTTCTACTGCTGGTCTTTCTGACTT---------------TTTAAAAAATGAATAGATTTATGGCATTGTCTTCTGGGTGTCTGTTTCA-TTTATCAGGAATACTACCAAATAGAACGTTATTGTAAACTCACTGGTTTATTTTTACTTTATG-----TTAAT--AATGAATTCAGTAGTAAA------GTTTCAGAGACTACATGCAAGGGGAAATTAACAAAACTTT--GTTTCAT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40455631 185 + 149736546 --------------CTACTGGTCTTACTGCTAT---------------TCT----AATGAATTGAATTATGCAATGGTCTCCT-GGTACCTATTTAAGTTCATCTGGAATATTGTCGGCGGGAA-------ATCCTCTCAGTCGTTTAACTCTGTTTTGTGCCCTTTTAGCTTACTCTCTGCAACAGtga----------taaaaagctacttg-aggagaaaaggg-------ttt--atttaat
i mm10.chr6                C 0 I 462
s canFam3.chr16             52152078 188 -  59632846 GCTTTTGCTTT--------------------------------------------AATGAATAGATTTATGGAATGATCTTCA----GCCTG-TTAG-TTCATTAGAAATATTGCCAAGTAGGAAGTTACTGTTAACTCACTGG-TTATCTTGACTTTGTT-----TTAGT--AACGAATTCAATAATGAATTCGGTGTTTTGAAGACTACAAGCGAGGACAAATTAACAATAATTTAAGTTTCAT
i canFam3.chr16            C 0 C 0

a score=392041.000000
s hg38.chr7_GL383534v2_alt     92598 144 +    119183 TCCCAGAAC----TGTTCAAAAGTTCTTCCTTAATCACAAGGAAAACACATATTTTCAGA-TCAGCCAAGGCTTTTTATGAACTGTGAGGATATAC--TTAACATGCAGAATCTAGAATTGCAGGTTTTATACAGGTTTTAGAATTCCTCt
s panTro4.chr7             143192492 144 + 161824586 TCCCAGAAC----TGTTCAAAAGTTCTTCCTTAATCACAAGGAAAACACATATTTTCAGA-TCAGCCAAGGCTTTTTATGAACTGTGAGGATATAC--TTAACATGCAGAATCTAGAATTACAGGTTTTATACAGGTTTTAGAATTCCTCt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139014573 144 + 157549271 TCCCAGAAC----TGTTCAAAAGTTCTTCCTTAATCACAAGGAAAACACATATTTTCAGA-TCAGCCAAGGCTTTTTATGAACTGTGAGGATATAC--TTAACATGCAGAATCTAGAATTACAGGTTTTATACAGGTTTTAGAATTCCttt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93135712 133 + 110113093 TCCCAGAAC----TGTTCAAAAGTTCTTCCTTAATCACAAGGAAAACACATATTTTCAGA-TCAGCCAAGGCTTTTTATGAACTGTGAGGATATAC--TTAACATGCAGAATCTAGAAT-----------TACAGGTTTTAGAATTCCTCt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181029694 133 + 198365852 TCCCAGAAC----TGTTCAAAAGTTTTTCCTTAATAACAAGGAAAATACATATTTTCAGATTCAGCCAATGCTTTTTATGAACTGTGAGGATATAC--TTAACACGCAGAATCTAGAAT-----------TACAGGTTTTAGAAttc-ttt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174777790 131 + 192294377 TCCCAGAAC----TGTTCAAAAGTTTTTCCTTAATAACAAGGAAAATACATATTTTCAGATTCAGCCAATGCTTTTTATGAACTGTGAGGATATAC--TTAACACGCAGAATCTAGAAT-----------TACAGGTTTTAGAAttc---t
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163446294 119 + 180432695 TCCCAGAAC----TGTTCAAAAGTTTTTCCTTAATCACaaggaaaatacatattttcagatTCAGCCAATGATTTTTATGAACTGTGAGGATATAC--TTAACACGCAGAATCTAGAAT-----------TACagg---------------
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110474753 119 + 127223203 TCCCAGAAC----TGTTCAAAAGTTTTTCCTTAATCACAAGGAAAATACATATTTTCAGATTCAGCCAATGCTTTTTATGAACTGTGAGGATATAC--TTAACACGCAGAATCTAGAAT-----------TACAGG---------------
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23818542 114 - 128169293 TCCCAGAAC----TGTT--------------------CAAGGAAAACACATATTTTCAGATTCAGCCAATGCTTTTGATGAACTGTGAGAATATAC--TTAACATGCAGAATCTGGAAA-----------TACAGGTTTTACAAttcttct
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52152266 138 -  59632846 TCCCAGAACTAATTGTCTAGAAGTTCTTCCTT--TTACAAAGAAGACAATTATTTTCAGATTCAACCAGTGCTTTTTGTGAACTGTGGGAATGTATTATTAGTTAGCTGAATCTGAAAT-----------TATGGACCTTAGAATTCATTT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40455816 462 + 149736546 I

a score=442296.000000
s hg38.chr7_GL383534v2_alt     92742 173 +    119183 tttttttttttttttttttttttttttttttgagatggaatctagctctgttgcccaggctggaatgcagtggcaccatcttggctcactgcaacct------------------------------ctgcctcccaggttgaagtgattctcctgccttagcctcccaagtagctgggactacaggcatgtgccaccacacc
s panTro4.chr7             143192636 154 + 161824586 tttttttttttt-------------------gagatggaatctagctctgttgcccaggctggaatgcagtggcaccatcttggctcactgcaacct------------------------------ccgcctcccaggttgaagtgattctcctgccttagcctcccaagtagctgggactacaggcatgtgccaccacacc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139014717 157 + 157549271 tttttttttttt----------------tttgagatagaatctagctctgttgcccaggctggaatgcagtggcaccatcttggctcactgcaacct------------------------------ccgcctcccaggttgaagtgattctcctgccttagcctcccaagtagctgggcctataggcatgtgccaccacacc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93135845 165 + 110113093 tttttttttttt--------ttttcttttttgagatggaatctagctctgttgcccaggctggaatgcagtggcaccatcttggctcactgcaacct------------------------------ccgcctcccaggttgaagtgattctcctgccttagcttcccaagtagctgggactataggcatgtgccaccacacc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181029827 154 + 198365852 tttttttttttt-------------------gagatggaatctagctctgctgcccaggctggaatgcagtggcaccatcgtggctcactgtaacct------------------------------ttgcctcccaggttcaagtgattctcctgccttagtctcccaagtagctgggactacaggcatgtgccaccacacc
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174777921 154 + 192294377 tttttttttttt-------------------gagatggaatctagctctgctgcccaggctggaatgcagtggcaccatcgtggctcactgtaacct------------------------------ttgcctcccaggttcaagtgattctcctgccttagtctcccaagtagctgggactacaggcatgtgccaccacacc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163446413 145 + 180432695 ---------ttt-------------------gagatggaatctagctctgctgcccaggctggaatgcagtggcaccatcgtggctcattgtaacct------------------------------ttgcctcccaggttcaagtgattctcctgccttagtctcccaagtagctgggactacaggcatgtgccaccacacc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110474872 145 + 127223203 ---------ttt-------------------gagatggaatctagctctgctgcccaggctggaatgcagtggcaccatcgtggctcactgtaacct------------------------------ttgcctcccaggttcaagtgattctcctgccttagtctcccaagtagctgggactacaggcatgtgccaccacacc
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23818656 189 - 128169293 tttttttttctt--------------tttttgagacggagtctaggtccattgcccaggctagaatgcagtggtgccattttggcccactgcaacctccacctcctgggttcaagtgactctcctgcccacctcctgggttcaagtgactctcctgccttagcctcccaagtagctgggactgcaggcatgtgccaccacaac
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40455816 462 + 149736546 I
e canFam3.chr16             52152404   0 -  59632846 C

a score=40740.000000
s hg38.chr7_GL383534v2_alt     92915 14 +    119183 tggctagttcttca
s panTro4.chr7             143192790 14 + 161824586 tggatagttcttca
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139014874 14 + 157549271 tggctagttcttca
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93136010 14 + 110113093 tggctagttcttca
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181029981 14 + 198365852 cggctagttcctca
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174778075 14 + 192294377 tggctagttcctca
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163446558 14 + 180432695 tggctagttccTCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110475017 14 + 127223203 tggctagttcctca
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23818845 14 - 128169293 tggctagttcttCC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40456278 14 + 149736546 TCATGAACTCCTTT
i mm10.chr6                I 462 C 0
e canFam3.chr16             52152404  0 -  59632846 C

a score=1871237.000000
s hg38.chr7_GL383534v2_alt     92929 533 +    119183 tttttaTAC--------TGAGATTCATCAAGTAC--TCTATTTTGC-TTAATTTGTGT-------------------------------TGG---------------------GATTTTCTATTCCATAAGGAATATCTCTCCCCAAGGCTATTCCTGTGAGTATATCATATTGGCTGAGGCTAACATTCACTCTAATGACTGCCTAGCCTTTATAGAG---------------ATGAATCAAAGGCCCATTGCAATATCCACAATCTGGTGTACAGTGGCCTTCTCGTTAAGCCCATTAAAATGTTT--TGATTGTGATAGGATGAAATGAAGACCTGATGCACATCTGCCATTGAGGCA-TAACCACTTAAAGCTCCTCTTTACATATGCCATGTTAAAATAAAAaaaaaacaatggactttggcaccaggctgaccaaggttctgctcttaagtctgct-attaccagttcgactttgggccactt-a-----ctttcaacagccttcattgtttccactgtatattaccaaatgattattaagattcaatgagataaaatagtaagcaagcagtgagctctcaataaatATTCTGCCATTGCTAGTAAAGCCTCATA
s panTro4.chr7             143192804 531 + 161824586 tttttaTAC--------TGAGACTCATCAAGTAC--TCTATTTTGC-TTAATTTGTGT-------------------------------TGG---------------------GATTTTCTATTCCATAAGGAATATCTCTCCCCAAGGCTATTCCTGTGAGTATATCATATTGGCTGAGGCTAACATTCACTCTAATGACTGCCTGGCCTTTATAGAG---------------ATGAATCAAAGGCCCATTGCAATATCCACAATCTGGTGTACAGTGGCCTTCTCGTTAAGCCCATTAAAATGTTT--TGATTGTGATAGGATGAAATGAAGACCTGACGCACATCTGCCATTGAGGCA-TAACCACTTAAAGCTCCTCTTTACATATGCcatgttaaaataaaaaaaa--caatggactttggcaccaggctgaccaaggttctgctcttaagtctact-attaccagttcgactttgggccactt-a-----ctttcaacagccttcattgtttccactgtatattaccaaatgattattaagattcaatgagataaaatagtaagcaagcagtgagctctcaataaatATTCTGCCATTGCTAGTAAAGCCTCATA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139014888 529 + 157549271 tttttaTAC--------TGAGATTCATCGAGTAC--TCTATTTTGC-TTAATTTGTGT-------------------------------TGG---------------------GATTTTCTATTCCATAAGGAATATCTCTCCCCAAGGCTATTCCTGTGAG-ATATCATATTGGCTGAGGCTAACATTCACTCTAATGACTGCCTAGCCCTTATAGAG---------------ATGAATCGAAGGCCCATTGCAATATCCACAATCTGGTGTACAGTGGCCTTCTCGTTAAGCCCATTAAAATGTTT--TGATTGTGATAGGATGAAATGAAGACCTGACGTACATCTGCCATTGAGGCA-TAACCACTTAAAGCTCCTCTTTACATATGCcatgttaaaataaaaaaa---caatggactttggcaccaggctgaccaaagttctgctcttaagtctact-attaccagttcgactttgggccactt-a-----ctttcaagagccttcatcctttccactgtatattaccaaatgattattaagattcaatgagacaaaatagtaagcaagcagtgagctctcaataaatATTCTGCCATTGCTAATAAAGCCTCATA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93136024 529 + 110113093 tttttaTAC--------TGAGATTCATCAAGTAC--TC--TCTTGC-TTAATTTGTGT-------------------------------TGG---------------------GATTTTCTATTCCATAAGGAATATCTCTCCCCAAGGCTATTCCTGTGAGTATATCATATTGGCTGAGGCTAACATTCACTCTAATGACTGCCTAGGCTTTATAGAG---------------ATGAATCGAAGGCCCATTACAATATCCACAATCTGGTGTACAGTGGCCTTCTCGTTAAGCCCATTAAAATGTTT--TGATTGTGATAGGATGAAATGAAGACCTGACGCACATCTGCCATTGAGGCA-TAACCATTTAAAGCTTCTCTTTACATATGCcatgttaaaatcaaaaaa---caatggactttggcaccaggctgatcaaggttctgctcttaagtctact-attaccagttcgactttgggccacttaa-----ctttcaagaaccttcatcctttccactgtatattaccaaatgatttttaagattcaatgagataaaatagtaagcaagcagtgagctctcaataaatATTCTGCCATTGCTAATAAAGCCTCATA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181029995 523 + 198365852 ttttta-----------TGAGATTTGTCAAATAC--TCTATTTTGC-TTAATTTGTGT-------------------------------TGG---------------------GATTTTCTATTCCATAAGGAATATCTCTCCCCAAGGCTGTTCCTGAGAGTATGTCATATTGGCTGAGGTTAACACTGACTCTAATGACTGCCTGGCCTTTATAGAG---------------ATGAATCGAAGGCCCTTTACAATATCCACAATCTGGTGTACAGTGGCCTTCTCGTTAAGCCCATTAAAATGTTT--TGATTGTGACAGGATGAAATGAAGACCTGACGCGCATCTGCCATTGAGGCA-TAACCACTTAAAGCTCCTCTTTACATATGCCATGTTAAAATCAAAACA---CAatggactttggcaccaggctgaccaaggttctgctcttaagtctact-attaccagttcgattttggaccactt-a-----ctttcgagagccttcatcctttccactgtaTATTACCAAATGATTATTAAGATTCAGTGAGATAAAAT----AGCAAGCAGTGTGCTCTCAATAAATATTCTGCCATTGCTAATAAAGCCTCATA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174778089 523 + 192294377 ttttta-----------TGAGATTTGTCAAATAC--TCTATTTTGC-TTAATTTGTGT-------------------------------TGG---------------------GATTTTCTATTCCATAAGGAATATCTCTCCCCAAGGCTGTTCCTGAGAGTATGTCATATTGGCTGAGGTTAACACTGACTCTAATGACTGCCTGGCCTTTATAGAG---------------ATGAATCGAAGGCCCTTTACAATATCCACAATCTGGTGTACAGTGGCCTTCTCGTTAAGCCCATTAAAATGTTT--TGATTGTGACAGGATGAAATGAAGACCTGACGCGCATCTGCCATTGAGGCA-TAACCACTTAAAGCTCCTCTTTACATATGCcatgttaaaatcaaaaca---caatggactttggcaccaggctgaccaaggttctgctcttaagtctact-attaccagttcgattttgggccactt-a-----ctttcgagagccttcatcctttccactgtaTATTACCAAATGATTATTAAGATTCAGTGAGATAAAAT----AGCAAGCAGTGTGCTCTCAATAAATATTCTGCCATTGCTAATAAAGCCTCATA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163446572 523 + 180432695 TTTTTA-----------TGAGATTTGTCAAGTAC--TCTATTTTGC-TTAATTTGTGT-------------------------------TGG---------------------GATTTTCTATTCCATAAGGAATATCTCTCCCCAAGGCTATTCCTGTGAGTATGTCATATTGGCTGAGGTTAACACTGACTCTAATGACTGCCTAGCCTTTATAGAG---------------ATGAATCGAAGGCCCATTACAATATCCACAATCTGGTGTACAGTGGCCTTCTCGTTAAGCccattaaaatgttt--tgattGTGACAGGATGAAATGAAGACCTGACACGCATCTGCCATTGAGGCA-TAACCACTTAAAGCTCCTCTTTACATATGCCATgttaaaatcaaaaca---caatggaCTTTGGCACCAGGCTGACCAAGGTTCTGCTCTTAAGTCTACT-ATTACCAGTTCGATTTTGGGCCACTT-A-----CTTTCGAGAGCCTTCATCCTTTCCACTGTATATTACCAAATGATTATTAAGATTCAGTGAGATAAAAT----AGCAAGCAGTGtgctctcaataaatattctgCCATTGCTAATAAAGCCTCAta
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110475031 527 + 127223203 ttttta-----------TGAGATTTGTCAAGTAC--TCTATTTTGC-TTAATTTGTGT-------------------------------TGG---------------------GATTTTCTATTCCATAAGGAATATCTCTCCCCAAGGCTATTTCTGTGAGTATGTCATATTGGCTGAGGTTAACACTGACTCTAATGACTGCCTAGCCTTTATAGAG---------------ATGAATCGAAGGCCCATTACAATATCCACAATCTGGTGTACAGTGGCCTTCTCGTTAAGCCCATTAAAATGTTT--TGATTGTGACAGGATGAAATGAAGACCTGACGCGCATCTGCCA-CGAGGCA-TAACCACTTAAAGCTCCTCTTTACATATGCCATGTTAAAATCAAAACA---CAatggactttggcaccaggctgaccaaggttctgctcttaagtctactaattaccagttcgattttgggccactt-a-----cttTCGACAGCCTTCATCCTTTCCACTGTATATTACCAAATGATTATTAAGATTCAGTGAGATAAAATAGTAAGCAAGCAGTGCGCTCTCAATAAATTTTCTGCCATTGCTAATAAAGCCTCATA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23818859 539 - 128169293 TTTTTATAC--------GGGGACTCATCAAGTAC--TCTATTTTGCTTTAATTCGTGT-------------------------------TGG---------------------GATTTTCTATTCCACAAGGAATATCTCTCCCCAAGGCTATTTCTGTGACTATATCATATTGGCTGAGGTTAATATTGACTCTAATG-----TTAACCTCATTAGAGTTAACATTAGGGTTAATGAAAAGAAAGCCCATTATAACAT-CACAATCTGGTGTACAGTGGCCTTCCTGTTAAGCCCATTAAAAAGTTT--TGATTGTGATACGTTGAAATGAAGACCTGAAGCACATCTGCCATTGAGGCA-TAACCACTGAAGAGTCTTCTTTACATATGCTATGTT-AAATCAGAAAA---CAatggactttgggaccaggctgaccaaggttcttctcttaagtctact-attaccagtttgactttgggccactt-a-----cttTAGAGAGCCTTCATCCTTTCCACTGTATATCACCAAGCAATTATAGAGATTCAATGAGATAAAATAGTAAGCAAGCAGTGAGTGCTCAATAAATATTCTGCCATTGCTAATAAAGCCTTATA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40456292 530 + 149736546 CATTTATACTGACCATGTAAAAGCCAGAAATTACAGTCTTTTTTGT-T---TTTATAT-------------------------------TGATATCAATCAAGAACAGAGTTTGCTTTTCTTTGGCACAATGCATCTC-CTTCCCAAAACTTTCCCCATGACCTCATC----TGATTGAGTTTAATAAT-ACTCTAATGACTATATAGCCTTTAGAGAG-------------------AATATAGGCCCATACAAATATCCACAATCAAGTGTGTGATGGATTTCTTGTTATGCCTATTAAGGCCTTT--TCATTGTTATACAGTAGAAT-AAGACCTAAAGCATATGTACTATTGAGACAGTAAGCACACGAGGCACCAC--TATATATGCCATgttcaatgtataaaa---c-atggactttggtctcaggttgaccaaggttctgttcttagagctact-attaccagtttcaccttggaccagtc-a-----ctCTCA-------CCATATTTTTCAATGTATCTTG-CAAGAATCTATAAAGACTGAAT-AGATAAAATACTAAGCATGCAACAGGCCCTAGAAAAATATT------TTATTTGTAATGCCTCTCA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52152404 541 -  59632846 TTTTTATAC--------CGAAATTCATCAAGTAC--TACATTTTAC-tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTG---------------------GATTTTCTATTCCATAATGACTATCTCTGCCCGAGACTGTCCCTGTGACTACATCATCTTGGTGGAAAA-AACATTGATTCTAAGGACTGTCTAGCCTTTACAGAG---------------AAG-ATAGAGAACCTATCACAATATCCAT---------TACCAAGGCCTTTTTGTTAAGCCTGTCGAGGTTTTTAAAAATTGTGATACGGTAAAATTAAGACTCAAAGCCTGTCTGCCATCAAGATAGTAACAACTGAAGATTGCTCTTTACATATGCCGTCT---AATCaaaa-a---ccatggattttggttccaggatgaccaaggt-----tcttgggtctatc-atcactggcttgacattgggtcggtc-actgagctttctaaagccttcatccctgccactatgtcttactgagtagttatggaaattaagtgagataaaat----agtaagcagtgagt----agtcagtgttctgccacTGTGAATAATGCCTCATA
i canFam3.chr16            C 0 I 204

a score=1377355.000000
s hg38.chr7_GL383534v2_alt     93462 349 +    119183 T-------TTTTAAG-AAACATTTTTGTGTGCATTATCTTGATTGATGTTTTTATTCCTCAATGCTTTTCTGTCTCATAGGAATTCGGCTTTGCATGAAGTTTATGCTCACGCAGTGCTTGGGCATCACCCCCATGTGGTACGTTACTATTCCTCATGGGCAGAAGATGACCACATGATCATTCAGAATGAATACTGCAATGGTAAGTAGTATATAGATGAATAACTACGAAGAGGGAGATGAACTTTATAAGCCTTCAGAAATAAA--CTTTCCCTCCTCCTCATAGTTCATTC-CACGGATAGCAGATATACCT--AAAAAGTCTGTACTATATATTATAGTCTTGCTTGGAAGCACAGA
s panTro4.chr7             143193335 349 + 161824586 T-------TTTTAAG-AAACATTTTTGTGTACATTATCTTGATTGATGTTTTTATTCCTCAATGCTTTTCTGTCTCATAGGAATTCGGCTTTGCATGAAGTTTATGCTCACGCGGTGCTTGGGCATCACCCCCATGTGGTACGTTACTATTCCTCATGGGCAGAAGATGACCACATGATCATTCAGAATGAATACTGCAATGGTAAGTAGTATATAGATGAATAACTACGAAGAGGGAGATGAACTTTATAAGCCTTCAGAAATAAA--CTTTCCCTCCTCCTCATAGTTCATTC-CACGGATAGCAGATATACCT--AAAAAGTCTGTACTATATATTATAGTCTTGCTTGGAAGCACAGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139015417 349 + 157549271 T-------TTTTAAG-AAACATTTTTGTGTACGTTATCTTGATTGATGTTTTTATTCCTCAATGCTTTTCTGTCTCGTAGGAATTCGGCTTTGCATGAAGTTTATGCTCACGCGGTGCTTGGGCATCACCCCCATGTGGTACGTTACTATTCCTCATGGGCAGAAGATGACCACATGATCATTCAGAATGAATACTGCAATGGTAAGTAGTATATAGATGAATATCTACGAAGAGGGAGATGAACTTTATAAGCCTTCAGAAATAAA--CTTTCCCTCCTCCTCATAGTTCATTC-CACGGATAGCAGACATACCC--AAAAAGTCTATACTATATATTATAGTCTTGCTTGGAAGTACAGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93136553 349 + 110113093 T-------TTTTAAG-AAACATTTTTGTGTACATTATCTTGATTGATGTTTTTATTCCTCAATGCTTTTCTGTCTCGTAGGAATTCAGCTTTGCATGAAGTTTATGCTCACGCGGTGCTTGGACATCACCCCCATGTGGTACGTTACTATTCCTCATGGGCAGAAGATGACCACATGATCATTCAGAATGAATACTGTGATGGTAAGTAGTATATAGATGAATATCTACGAAGAGGGAGATGAACTTTATAAGCCTTCAGAAATAAA--CTTTCCATCTTCCTCATAGTTCATTC-CATGGATAGCAGACATACCT--AAAAAGTCTACACCATATATTATAGTCTTGCTTGGAAGCACAGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181030518 349 + 198365852 G-------TTTTAAG-AAACATTTTTGTGTACATTATGTTGATTGGTGTCTTTATTCCTCAATGTTTTTCTGTCTCATAGGAATTTGGCTTTGCATGAAGTTTATGCGCATGCAGTGCTTGGGCATCACCCCCATGTGGTACGTTACTATTCCTCATGGGCAGAAGATGACCACATGATCATTCAGAATGAATACTGCAATGGTAAGTAGTATATAGATGAATATCTATGAAGAAGGAGATGAACTTTATAAGCCTTTAGAAATAAA--CTTTCCCTCCTCCTCATAGTTTATGC-CACAGATAGCAGACATACCT--AAAAAGTCTGTACTATATATTATAGTCTTGCTTGGAAGCACAGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174778612 349 + 192294377 G-------TTTTAAG-AAACATTTTTATGTACATTATGTTGATTGGTGTCTTTATTCCTCAATGTTTTTCTGTCTCATAGGAATTTGGCTTTGCATGAAGTTTATGCGCATGCAGTGCTTGGGCATCACCCCCATGTGGTACGTTACTATTCCTCATGGGCAGAAGATGACCACATGATCATTCAGAATGAATACTGCAATGGTAAGTAGTATATAGATGAATATCTACGAAGAAGGAGATGAACTTTATAAGCCTTTAGAAATAAA--CTTTCCCTCCTCCTCATAGTTTATGC-CACAGATAGCAGACATACCT--AAAAAGTCTGTACTATATATTATAGTCTTGCTTGGAAGCACAGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163447095 349 + 180432695 g-------ttttaag-aaacatttttgtgtACATTATGTTGATTGGTGTCTTTATTCCTCAATGCTTTTCTGTCTCATAGGAATTTGGCTTTGCATGAAGTTTATGCACATGCAGTGCTTGGGCATCACCCCCATGTGGTACGTTACTATTCCTCATGGGCAGAAGATGACCACATGATCATTCAGAATGAATACTGCAATGGTAAGTAGTATATAGAAGAATATCTATGAAGAAGGAGATGAACTTTATAAGCCTTTAGAAATAAA--CTTTCCCTCCTCCTCATAGTTTATGC-CACAGATAGCAGACATACCT--AAAAAGTCTGTACTATATATTATAGTCTTGCTTGGAAGCACAGA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110475558 349 + 127223203 T-------TTTTAAG-AAACATTTTTGTGTACCTTATGTGGATTGGTGTCTTTATTCCTCAATGCTTTTCTGTCTCATAGGAATTTGGCTTTGCATGAAGTTTATGCGCATGCAGTGCTTGGGCATCACCCCCATGTGGTACGTTACTATTCCTCATGGGCAGAAGATGACCACATGATCATTCAGAATGAATACTGCAGTGGTAAGTAGTATATAGACGAATATCTACGAAGAGGGAGATGAACTTTATAAGCCTTCAGAAATAAA--CTTTCCCTCCTCCTCATAGTTTATGC-CACAGATAGCAGACATACCT--AAAAAGTCTGTACTATATATTATAGTCTTGCTTGGAAGCACAGA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23819398 349 - 128169293 T-------TTTTAAA-AACAATTTTTAAGTACATTATCTTGATGGATGTTTTTATTCCTCAATGCTTTTCTGTCTCTTAGGAATTTGGCTTTGCATGAAGTTTACGCTCATGCAGTGCTTGGGCATCATCCCCATGTGGTACGTTACTATTCCTCATGGGTGGAAGATGACCACATGATCATTCAGAGTGAATACTGCAATGGTAAGTATTATGTAGATGAATATCTACGAAGAGGGAGATGAACCTCACAAGCCTTCAGAAATAAA--CTTTGCCTCCTCTTCATAGTTTACGC-CATGTATAGCAGACATACCT--AAGATGTCTGCACTATATTTTATAGTCTTGCTTGTAAGCACAGA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40456822 318 + 149736546 TGTTTCCCTTTTAAGAAAACATTTTAATGTATAGTATTTCAATTAATTTTTCCA------AATGCTTTTCTGTCCCCTGGGAGATTGGATTTGCATGAAGTTTATGCTCATGCAGTGCTTGGCCATCATCCCCATGTGGTACGCTACTACTCATCATGGATAGAAGATGATCATGTGGTCATTCAAAATGAATACTGTAATGGTAAG---TATGTGGACTCATAT---------AAAGGATGAACTTTTTAAATCTTCAGATATAAA--TGT----GCCTCCTGACAGTTTAAGCTTTTACATATCAGTCATACTG--AACATGTTTG------------------TGCCTGGAAGCAGAGA
i mm10.chr6                C 0 I 3284
s canFam3.chr16             52153149 335 -  59632846 T-------TTTAAAA-AAAAATTTGTATGTATATCATCTTGACTCATTTTT------CTTGATGCTTCTCTGTCTTTTAGGAATTTGGCTCTGCATGAAGTTTATGCTCATGCAGTGCTTGGGCATCACCCTCATGTGGTCCGTTACTACTCTGCATGGGCAGAAGATGACCACATGATCATTCAGAATGAATACTGTAATGGTAAG---TATGTAGAGTAGTATCTGTGGAGAGGGAGATGAATTTTA-AATCAATAGGAAAAAAAATCTTTGCCTCTCCTTCATAGTTTAGGT-CA-GGATAGCA---ATACCTAAAAAAAGTCTGTACTA----CTACAGTTTTGCTTGGAAGCAGTGA
i canFam3.chr16            I 204 C 0

a score=13095.000000
s hg38.chr7_GL383534v2_alt     93811 3 +    119183 GCT
s panTro4.chr7             143193684 3 + 161824586 GCT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139015766 3 + 157549271 GCT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93136902 3 + 110113093 GCT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181030867 3 + 198365852 GCT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174778961 3 + 192294377 GCT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163447444 3 + 180432695 GCT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110475907 3 + 127223203 GCT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23819747 3 - 128169293 GCT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52153484 3 -  59632846 GCT
i canFam3.chr16            C 0 I 3577
e mm10.chr6                 40457140 3284 + 149736546 I

a score=25939.000000
s hg38.chr7_GL383534v2_alt     93814 10 +    119183 TCTCTTCCTC
s panTro4.chr7             143193687 10 + 161824586 TCTCTTCCTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139015769 10 + 157549271 TCTATTCCTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93136905 10 + 110113093 TCTATACCTC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181030870 10 + 198365852 TCTATACCTC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174778964 10 + 192294377 TCTATACCTC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163447447 10 + 180432695 TCTATACCTC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110475910 10 + 127223203 TCTATACCTC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23819750 10 - 128169293 TCCATTCCTC
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40457140 3284 + 149736546 I
e canFam3.chr16             52153487 3577 -  59632846 I

a score=732831.000000
s hg38.chr7_GL383534v2_alt     93824 226 +    119183 TTAA------AGGGGT-CCTCGACTTATTCTTTCTTTCCCTTCTGTTGTCAGGATAAtcattcagttcagaaaatatttattccatgctaggccttgggcaagtgaagatgagttagatgtgctccctccccttaagcaacatccaggctggtagagaa--------------------accag--aGCTTTGGTGGCTGCAGCCCTCCTCCTTGTTGGTAGCACCTCATGACCTCACCTACACACTTTGTCTTG
s panTro4.chr7             143193697 226 + 161824586 TTAA------AGGGGT-CCTCAACTTATTCTTTCTTTCCCTTCTGTTGTCAGGATAAtcattcagttcagaaaatatttatgccatgctagaccttgggcaagtgaagatgagttagatgtgctccctccccttaagcaacatccaggctggtagagaa--------------------accag--aGCTTTGGTGGCTGCAGCCCTCCTCCTTGTTGGTAGCACCTCATGATCTCACCTACACACTTTGTCTTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139015779 226 + 157549271 TTAA------AGGGGT-CCTCGACTTATTCTTTCTTGCCCTTCTGTTGTCAGGATAAtcattcagttcagaaaatatttattccatgctagaccttgggaaagtaaagatgagttagatgtgctccctccccttaagcaacatccaggctggtagagaa--------------------accag--aGCTTTGGTGGCTGCAGCCCTCTTCCTTGTTGGTAGCACCTCATGACCTCACCTACACACTTTGTCTTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93136915 226 + 110113093 TTAA------AGGGGT-CCTCGACTTATTCTTTCTTTCCCTTCTGTTGTCAGGATAAtcattcagttcagaaaatatttattccatgctagaccttgggcaagtgaagatgagttagatgtgctccctccccttaagcaacatccaggctggtagagaa--------------------accag--aGCTTTGGTGGTTACAGCCCTCCTCCTCACTGGTAGCACCTCATGACCTCACCTACACACTTTGTCTTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181030880 226 + 198365852 TTAA------AGGGGT-CCTCGACCTATTCTTTCTCTCCCTTCTGTTGTCAGGATAAtcattcatttcagaaaatatttattccatgttagaccttgggcaagtgaagatgagttagatgtgctccctccccttaagcaacattcaggctggtagagaa--------------------accag--aGCTTTGGTGGCTGCAGCCTTCCTCCTTGTTGGCAGTACCTCATGACCTCACCTACAAACTTTGTCTTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174778974 226 + 192294377 TTAA------AGGGGT-CCTCGACTTATTCTTTCTTTCCCTTCTGTTGTCAGGATAAtcattcatttcagaaaatatttattccatgttagaccttgggcaagtgaagatgagttagatgtgctccctccccttaagcaacattcaggctggtagagaa--------------------accag--aGCTTTGGTGGCTGCAGCCTTCCTCCTTGTTGGCAGTACCTCATGACCTCACCTACAAACTTTGTCTTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163447457 226 + 180432695 TTAA------AGGGGT-CCTCgacttattctttctttcccttctgttGTCAGGATAatcattcatttcagaaaatatttattccatgttagaccttgggcaagtgaagATGAGTTAGATGTGCTCCCTCCCCTTAAGCAACCTTCAGGCTGGTAGAGAA--------------------ACCAG--AGCTTTGGTGGCTGCAGCCTTCCTCCTTGTTGGCAGTACCTCATGACCTCACCTACAAACTTTGTCCTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110475920 225 + 127223203 TTAA------AGGGGT-CCTCGACTTATTCTTTCTTTTCCTTCTGTTGTCAGGATAAtcattcatttccgaaaatatttattccatgttagaccttgggcaagtgaagatgagttagatgtgctccctccccttaagcaacattcaggctggtagag-a--------------------aTCAG--AGCTTTGGTGGCTGCAGCCTTCCTCCTTGTTGGCAGTACCTCACGACCTCACCTAAAAACTTTATCTTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23819760 235 - 128169293 TTAACTATATAGATATACCTGAACTTATTCTTTCTTTCCCTTCTGTTGTCAGGATCAtcattcagttcagaaaatatttattccatgctagacttggggaaagtggagatgagttagacgtgttccctgcccttaagcagcatgaaggctagtagggaa--------------------acCTACTAGCTTCCATGGATGCAGCCTTCCTCCTCGTCGGCAGCACCTCATGACCTCACCTATAAACTTTGTCTTG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52157064 240 -  59632846 TTTA------TGGGGG-CCCTGTCTCA-TCTTTCCTTTCCCTCTGTTGCCAGGATAGACCTTCAGTTCAGAATATATAGATGACATGCAAGACCTTGAGAAAGTGAAAATGAATGGGTTGGG-GCCCTGTCTTGAAGGAGCACCTAGCCTACTAGGGAGGGAGATGGACTCCAGTGGACATGAG--ATCCT---TGGATGTAGGCTTCCTTCTTCTTGCCA-TATCTCACAGCTTCATCTGCAAACTCAGACTTC
i canFam3.chr16            I 3577 C 0
e mm10.chr6                 40457140 3284 + 149736546 I

a score=21012.000000
s hg38.chr7_GL383534v2_alt     94050 14 +    119183 GAGTGACTTCAtt---------t
s panTro4.chr7             143193923 14 + 161824586 GAGTGACTTCAtt---------t
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139016005 14 + 157549271 GAGTGACTTCAtt---------t
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93137141 14 + 110113093 GAGTGACTTCAtt---------t
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181031106 23 + 198365852 GAGGGACTTCTTTAtttatttat
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174779200 11 + 192294377 GAGGGACttc------------t
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163447683 18 + 180432695 gagggacttcttttttt-----t
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110476145 14 + 127223203 GAGGGACttttct---------t
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52157304 14 -  59632846 AGGTGACTTTGTT---------T
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40457140 3284 + 149736546 I
e calJac3.chr8              23819995  0 - 128169293 C

a score=236237.000000
s hg38.chr7_GL383534v2_alt     94064 104 +    119183 ttttttt---------------------------ctttgagatggagtttttctcttgttgcctaggctggagtgcaatggtgtgatctcggctcaccgcaacctccacctcctgggttcaagcaattctc
s panTro4.chr7             143193937 105 + 161824586 ttttttt--------------------------tctttgagatggagttttgctcttgttgcctaggctggagtgcaatggtgcgatctcggctcaccgcaacctccacctcctgggttcaagcaattctc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139016019 119 + 157549271 ttttttt------------tttttttttttttttttttgagatggagttttgctcttgttgcctaggctggagtgcaatggtgcgatctcggctcaccgcaacctccacctcctgggttcaagcaattctc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93137155 130 + 110113093 ttttttttttttttttttttttttttttttttttttttgagaaggag-tttgctcttgttgcctaggctggagtgcaatggtgcgatctcggctcaccgcaacctccgcctcctgggttcaagcgattctc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181031129 103 + 198365852 ttttttt----------------------------tttgagatggagttttgctcttgttgcctaggctggagtgcaatggtgcgatctcgtctcaccgcaacctccacctcctgagttcaagcgattctc
i rheMac3.chr3             C 0 M 139
s macFas5.chr3             174779211 103 + 192294377 ttttttt----------------------------tttgagatggagttttgctcttgttgcctaggctggagtgcaatggtgcgatctcggctcaccgcaacctccaccttctgagttcaagcgattctc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163447701 103 + 180432695 ttttttt----------------------------tttgagacggagttttgctcttgttgcctaggctggagtgcaatggtgcgatctcggcttaccgcaacctccacctcctgagttcaggcgattctc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110476159 101 + 127223203 ttttttt----------------------------tttgagatggagttttg--cttgttgcctaggctggagtgcaatggtgcgatctcggctcaccgcaacctccacctcccgggttcaagtgattctc
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40457140 3284 + 149736546 I
e canFam3.chr16             52157318   0 -  59632846 C
e calJac3.chr8              23819995   0 - 128169293 C

a score=257363.000000
s hg38.chr7_GL383534v2_alt     94168 148 +    119183 ctgcctcagtctcccaagtagctgggattacagacacctgccaccatgcctggctaattttttgta----tttttttttaatagaggcggggtttccccatgttggtcatgctggtcttgaactcctgacctcaggtgatccacctgcctcg
s panTro4.chr7             143194042 148 + 161824586 ctgcctcagtctcccgagtagctggcattacagacacctgccaccatgcctggctaattttttgta----tttttttttaatagaggcagggtttccccatgttggtcatgctggtcttgaactcctgacctcaggtgatccacctgcctcg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139016138 152 + 157549271 ctgcctcagtctcccgagtagctgggattacagacacccgccaccatgcatggctaattttttgtatttttttttttttaatagaggcggggtttctccatgttggtcatgctggtcttgaactcccaaccttgggtgatccacccgcctcg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93137285 149 + 110113093 ctgcctcagtctcccgagtagctgggattacagacacctgtcaccatgcctggctaattttttgta---ttttttttttaatagagacggggtttctccatgttggtcatgctggtcttgaactcccaacctcaggtgacccacctgcctcg
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174779314 151 + 192294377 ctgcctcagtctcccgagtagctaggattacagacacctgccaccacgcctggctaattttttgta-ttttttttttttagtagagatggggtttctccatgttggtcaggctggtcttgaactcccaacctcaggtgatccacctgcctca
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163447804 152 + 180432695 ctgcctcagtctcccgagtagctaggattacagacacctgccaccacgcctggctaattttttgtatttttttttttttagtagagatggggtttctccatgttggtcaggctggtcttgaactcccaacctcaggtgatccacctgcctca
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110476260 152 + 127223203 ctgcctcagtctcctgagtagctgggattacagacacccgccactacgcctggcttaatttttgttatttttttttttagttagagacggggtttctccatgttggtcaggctggtcttgaactcccaacctcaggtgatccacctgcttca
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40457140 3284 + 149736546 I
e canFam3.chr16             52157318   0 -  59632846 C
e calJac3.chr8              23819995   0 - 128169293 C
e rheMac3.chr3             181031232 139 + 198365852 M

a score=119083.000000
s hg38.chr7_GL383534v2_alt     94316 47 +    119183 gcctcccaaagtgctgggattacaggcgtgagccactgcatctagcc
s panTro4.chr7             143194190 47 + 161824586 gcctcccaaagtgctgggattacaggcgtgagccactgcatctagcc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139016290 47 + 157549271 gcctcccaaagtgctgggattacaggcgtgagccaccgcATCTAGTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93137434 47 + 110113093 gcctcccaaagtgctgggattacaggcgtgagcccccgcatctagcc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181031374 47 + 198365852 gcctcccaaagtgctgggattacaggtgtgagccaccgcacctagcc
i rheMac3.chr3             M 139 C 0
s macFas5.chr3             174779465 47 + 192294377 gcctcccaaagtgctgggattacaggtgtgagccaccgcacctagcc
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163447956 47 + 180432695 gcctcccaaagtgctgggattacaggtgtgagccaccgcacctagcc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110476412 47 + 127223203 gcctcccaaagtgctgggattacaggtgtgagccaccgcacctagcc
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40457140 3284 + 149736546 I
e canFam3.chr16             52157318  0 -  59632846 C
e calJac3.chr8              23819995  0 - 128169293 C

a score=83104.000000
s hg38.chr7_GL383534v2_alt     94363 25 +    119183 GAGTGACTTCATTTTTAACAAGCTC
s panTro4.chr7             143194237 25 + 161824586 GAGTGACTTCATTTTTAACAAGCTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139016337 25 + 157549271 GAGTGACTTCTTTTTTAACAAGCTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93137481 25 + 110113093 GAGTGACTTCATTTTTAACAAGCTC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181031421 25 + 198365852 GAGTGACTTCATTTTTAACAAGCTC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174779512 25 + 192294377 GAGTGACTTCATTTTTAACAAGCTC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163448003 25 + 180432695 gagtgacttcatttttaacaagctc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110476459 25 + 127223203 GAGTGACTTCATTTTTAACAAGCTC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23819995 25 - 128169293 GAGTGACTTCATTTTTAACAAGCTC
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40457140 3284 + 149736546 I
e canFam3.chr16             52157318  0 -  59632846 C

a score=978891.000000
s hg38.chr7_GL383534v2_alt     94388 314 +    119183 CAAAACG--CTCTTTCCTTACTTA---TTGTTTCTAATTAATACGTCATATATAGTGTATAAA-----TTCTAAGAATACTTGC-AAAAAATAAAAAAC----TTTACTGTAGCCCTCCTTGTGTTTCCGAAACGAGCTAAATTTTTCTCCCTTCTGAACTTACATGTCATGCTAAAATAATTC----TTTAAATTCAATTTTACACAGAATGCATTTAAATATTATTTCCCT----------CAAATTCCATGACTATCTCAGA--------------------GCTCAATGAGTGGAGCTATGGTTTTTGTAACTGCCAGTTAGAGCTGGGTCTCTATAATT----TGAAGAACCTGCCAATGAA
s panTro4.chr7             143194262 314 + 161824586 CAAAACG--CTCTTTCCTTACTTA---TTGTTTCTAATTAATAAGTCATATATAGTGTATAAA-----TTCTAAGAATACTTGC-AAAAAATAAAAAAC----TTTACTGTAGCCCTCCTTGTGTTTCCGAAACGAGCTAAATTTTTCTCCCTTCTGAACTTACATGTCATGCTAAAATAATTC----TTTAAATTCAATTTTACACAGAATGCATTTAAATATTATTTCCCT----------CAAATTCCATGACTATCTCAGA--------------------GCTCAATGAGTGGAGCTATGGTTTTTGTAACTGCCAGTTAGAGCTGGGTCTCTATAATT----TGAAGAACCTGCCAATGAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139016362 316 + 157549271 CAAAATGCTCTCTTTCCTTACTTA---TTCTTTCTAATTAATAAGTCATATATAGTGTATAAA-----TTCTAAGAAGACTTGC-AAAAAATAAAAAAC----TTTACTGTAGCCCTCCTTGTGTTTCCGAAAGGAGCTAAATTTTTCTCCTTTCTGAACTTACATGTCGTGGTAAAATAATTC----TTTAAATTCAATTTTACACAGAATGCATTTAAATATGAATTCCCT----------CAAATTCCATGACTATCTAAAA--------------------GCTCAATGAGTGGAGCTATGGTCTTTGTAACTGCCAGTTAGAGCTAGGTCTCTATAATT----TGAAGAACCTGCCAATGAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93137506 309 + 110113093 CAAAATGCTCTCTTTCCTTACTTA---TT-------ATTAATAAGTCATATATAGTGTATAAA-----TTCTAAGAAGACTCAC-AAAAAGTAAAAAAC----TTTACTTTAGCCCTCCTTGTGTTTCTGAAAGGAGCTAAATTTTTCTCCCTTCTGAACTTACATATCATGCTAAAATAATTC----TTTAAATTCAATTTTACACAGAATGCATTTAAATATGAATTCCCT----------CAAATTCCATGACTATCTCAGA--------------------GCTCAATGAGTGGAGCTATGGTCTTTGTAACTGCCAGTTAGAGCTAGGTCTCTATAGTT----TGAAGAACCTGCCAATGAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181031446 312 + 198365852 CCAAACACTCTCTTTCCTTACTTA---TTCTTTCTAATTAA----TCACATATAGCGTATAAA-----TTCTAAGAAGACTCTT-AAAAAATAAAAAAC----TTTATTGTAGCCCTCCTTGTGTTTCTGAAAGGAGTTGAATTTTTCTCCCTTCTGAACTTACATGTCATGCTAAAATAATTC----TTTAAATTCAATTTTACACAGAATGCATTTAAATATGAATTCCCT----------CAAATTCCATGACTATCTCAGA--------------------GCTCAATGAGTGGAGCTATGGTCTTTGTAACTGCCAGTTAGAGCTAGGTCTCTATAATT----TGAAGAACCTGCCAATGAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174779537 316 + 192294377 CCAAACACTCTCTTTCCTTACTTA---CTCTTTCTAATTAATAAGTCACATATAGCGTATAAA-----TTCTAAGAAGACTCTT-AAAAAATAAAAAAC----TTTATTGTAGCCCTCCTTGTGTTTCTGAAAGGAGTTGAATTTTTCTCCCTTCTGAACTTACATGTCACGCTAAAATAATTC----TTTAAATTCAATTTTACACAGAATGCATTTAAATATGAATTCCCT----------CAAATTCCATGACTATCTCAGA--------------------GCTCAATGAGTGGAGCTATGGTCTTTGTAACTGCCAGTTAGAGCTAGGTCTCTATAATT----TGAAGAACCTGCCAATGAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163448028 317 + 180432695 ccaaaCACTCTCTTTCCTTACTTA---TTCTTTCTAATTAATAAGTCACATATAGCGTATAAA-----TTCTAAGaagactcttaaaaaaataaaaaac----tttattgTAGCCCTCCTTGTGTTTCTGAAAGGAGCTGAATTTTTCTCCCTTCTGAACTTACATGTCATgctaaaataattc----tttaaattcAATTTTACACAGAATGCATTTAAATATGAATTCCCT----------CAAATTCCATGACTATCTCAGA--------------------GCTCAATGAGTGGAGCTATGGTCTTTGTAACTGCCAGTTAGAGCTAGGTCTCTATAATT----TGAAGAACCTGCCAATGAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110476484 317 + 127223203 CCAAACGCTCTCTTTCCTTAGTTA---TTCTTTCTAATTAATAAGTCACATATAGCATATAAA-----TTCTAAGAAGACTCTCAAAAGAATAAAAAAC----TTTATGGTAGCCCTCCTTGTGTTTCTGAAAGGAGCTGAATTTTTCTCCTTTCTGAACTTACATGTCATGCTAAAATAATTC----TTTAAATTCAATTTTACACAGAATGCATTTAAATATGAATTCCCT----------CAAATTCCATGACTATCTCAGA--------------------GCTCAATGAGTGGAGCTATGGTCTTTGTAACTGCCAGTTAGAGCTAGGTCTCTATAATT----TGAAGAACCTGCCAATGAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23820020 319 - 128169293 CAAAACATTCTTTTTCCTTACTTA---TTCTTTCTAATTAGTAAGTCATATGTAGCATATAAATTCTTTTCTAAGAAGACTCTC-AAAAAAT-AAAAAC----TTTACTGTAGTCCTCTTTGTGTTTCTGAAAGGAGCTGAATTATTCGACCTTC-AAACTTATGTGTCATGCTACAATAATTC----TTTAAATTCGATTTTACACAGAATGCATTTAAATATGAATTTCCT----------CAAATTCCATGACTATCTCAGA--------------------GCTCAGTGAGTGGAGCTATGGTCTTTGTAACTGCCAGTTAGAGCGAAGTCCCTATAACT----TGAAGAACGTGCCAATGAG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52157318 330 -  59632846 CAACACACTCTTACTTTCTATCTAATGTCCTTTCCA-------------------CACATAAG-----TTTTTAGAAGATTCCC-AGGAAA-AAGACACACCATTTACTTTAGGCCTCTTGGTGTTTCTGAAAAGTGCTGAA--ATTCTCCTTTCTGAATATAATTATTTTAACATGACAGGTCAATATTTATACTGAATTTTACATAGGATACATGAAAGTATGGATTTCCTAAAAAAAAAAAAAATGCCATTATCACCTCTGATCCTATTGTTCTGGACAGATACTTGAAGGCTGGAGCCC---------TAACTGCCAGGGAGACCCCAGACTCTATAATTTGACTGAAGAAGCTGCCAGTAAA
i canFam3.chr16            C 0 I 3
e mm10.chr6                 40457140 3284 + 149736546 I

a score=27892.000000
s hg38.chr7_GL383534v2_alt     94702 11 +    119183 CACTAATTAAT
s panTro4.chr7             143194576 11 + 161824586 CACTAATTAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139016678 11 + 157549271 CACTAATTAAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93137815 11 + 110113093 CACTAACTAAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181031758 11 + 198365852 CACTAATTAAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174779853 11 + 192294377 CACTAATTAAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163448345 11 + 180432695 CACTAATTAAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110476801  8 + 127223203 CACTAATT---
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23820339 11 - 128169293 CAATAATTAAT
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40457140 3284 + 149736546 I
e canFam3.chr16             52157648  3 -  59632846 I

a score=679943.000000
s hg38.chr7_GL383534v2_alt     94713 291 +    119183 AGTGTTCAGAggccgggcgcaatggctcatgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcagaagttcgag-acgagcctggccaaatatagtgaaaccccgtctcttctaaaaatacaaaaattagccaggtgtggtggcatgcacctttagtcccagctactggggatgctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagcgagccgagaccatgccattgtactccagcctgggtgacagagtgagactccgtctc--------
s panTro4.chr7             143194587 291 + 161824586 AGTGTTCAGAggccgggcgcaatggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcaggagttcgag-acgagcctggccaaatatagtgaaaccccgtctcttctaaaaatacaaaaattagccaggtgtggtggcatgcacctttagtcccagctactggggatgctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagcgagccgagaccatgccattgtactccagcctgggtgacagagtgagactccgtctc--------
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139016689 292 + 157549271 AGTGTTCAGAggctgggcacaatggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcacagggtcaggagctcgagaaccagcctggccaaatagagtgaaaccccatctctactaaaaatacaaaaattagccaggtgtggtggcatgcacctctagtctcagctactggggatgctgaggcaggagaatcacttgaatccgggaggcggaggttgcagcgagccaagaccatgccattgtactccagcctgggtgacagagtgagactctgtctc--------
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93137826 291 + 110113093 AGTGTTCAGAggccaggcgcaatggctcatgtctgtaatcccagcactttgggaggctgaggcaggcggatcatgaggtcgggagttcgag-accagcctggccaaatatagtgaaatcccgtctctactaaaaatacaaaaattagccgggtgtggtggcatgcacctttagtcccagctactggggatgctgaagcaggagaatcgcttgaacccgggaggcggacgttgcagtgagccgagaccatgccattgtactccagcctgggtggcagagtgagactccgtctc--------
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181031769 291 + 198365852 AGTGTTCAGAGGTGgggcacaatggctcacgcctgtaatcccagcagttttgcaggctgaggtgggcagatcatgaggtcaggagttagag-accagcctggccaaatatagtgaaaccccgtgtctactaaaaatacaaaaattagccgggtgtggtggcatgcacctttagtcccagctactggagaggctgaggcaggagaattgctcgcacccgggaggcggaggttgcagtgagccaagaccatgccattgcactccagcctgggtgacagagtgaaactctgtctc--------
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174779864 291 + 192294377 AGTGTTCAGAggcggggcacaatggctcacgcctgtaatcccagcagttttggaggctgaggtgggcagatcatgaggtcaggagttagag-accagcctggccaaatatagcgaaaccccgtgtctactaaaaatacaaaaattagccgggtgtggtggcatgcacctttagtcccagctactggggaggctgaggcaggagaattgctcgcacccaggaggcggaggttgcagtgagccaagaccatgccattgcactccagcctgggtgacagagtgaaactctgtctc--------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163448356 292 + 180432695 AGTGTTCAGAGGtggggcacaatggctcacgcctgtaatcccagcagttttggaggctgaggtgggcagatcatgaggtcaggagttagag-accatcctggccaaatagagtgaaaccccgtctctactaaaaatacaaaaattagccgggtgtggtggcatgcacctttagtcccagctactggggaggctgaggcaggagaattgctcgcacccgggaggcggaggttgcagtgagccaagaccatgccattgcactgcagcctgggtgacagagtgaaa--ctgtctc-----aaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110476809 298 + 127223203 -GTGTTCAGAggctgggcacaatggctcacgcctgtaatcccagcagttttggaggttgaggtgggcagatcatgaggtcaggagttagag-accagcctggccaaatatagtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtggtggcatgcacctttagtcccagctactggggaggctgaggcaggagaattgctcgaacccgggaggtggaggttgcagtgagccaagaccatgccattgcactccagcctgggtgacagagtgaaactctgtctcaaacaaaa
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40457140 3284 + 149736546 I
e canFam3.chr16             52157648   3 -  59632846 I
e calJac3.chr8              23820350   0 - 128169293 C

a score=9828.000000
s hg38.chr7_GL383534v2_alt     95004 3 +    119183 aaa
s panTro4.chr7             143194878 3 + 161824586 aaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139016981 3 + 157549271 aaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93138117 3 + 110113093 aaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181032060 3 + 198365852 aaa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174780155 3 + 192294377 aaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163448648 3 + 180432695 aaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110477107 3 + 127223203 aaa
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52157651 3 -  59632846 AAA
i canFam3.chr16            I 3 C 0
e mm10.chr6                 40457140 3284 + 149736546 I
e calJac3.chr8              23820350 0 - 128169293 C

a score=14111.000000
s hg38.chr7_GL383534v2_alt     95007 11 +    119183 --aaaaaa---------gaaaa
s panTro4.chr7             143194881 12 + 161824586 --aaaaaa--------agaaaa
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139016984 20 + 157549271 --aaaaaaaaaaaaaaaaaaaa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93138120 19 + 110113093 --aaaaaa-aaaaaaaaaaaaa
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181032063 14 + 198365852 --aaaaaa------aaaaaaaa
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174780158 14 + 192294377 --aaaaaa------aaaaaaaa
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163448651 14 + 180432695 --aaaaaa------aaaaaaaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110477110 14 + 127223203 --aaaaaa------aaaaaaaa
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40460424 11 + 149736546 -----AAA------TGAAAAGA
i mm10.chr6                I 3284 C 0
s canFam3.chr16             52157654 11 -  59632846 TTAATAAA------TAA-----
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23820350  0 - 128169293 C

a score=1934929.000000
s hg38.chr7_GL383534v2_alt     95018 548 +    119183 aGTGTTCAGAAGCATTCTAATACCTTAG---------AA-------TCAAGAT-CAGATAGCTATATGAATCCAGGCC--------------TTTTATTTAATTGAT---AACAATAAATCGAG--------TACAGTTGATGTACAAATACTGTGGCTCAAAT--AAGATTTAGGTGTATGTGCAGCTTCTATATTCTCCTTGGGTTGGCAGTCATTAAA------TATTTTATGATCTATTTCTAATGAAATTAGACTTAGACTCCATTAAT---TAAAATTACTGATGGCCTATAACTACTAGCCTGACACTGACATGGAGCTAATCATTGACACCAATAGTAGCTATACGACTATGCCTGATTGATCTTCTAGTTAATAATTAGGTAAAACTTTTAAAATGTTAGCTGGTACATATTTGAATCAATGGGGCCATATACTGGATACCTGAGATACTGGCATTTTCTTTTCCTCTTT-GAAAGCCCTGTAATTCTCCTTTCCAACATGTCTGTGGTATAA--ATAGGGCAGATATT--ATGCTTTGTACTGACACCGAAGTAATCT--ATTCGTTGGACTGAAGGCATTCATGAGGAATGTATTGA
s panTro4.chr7             143194893 548 + 161824586 aGTGTTCAGAAGCATTCTAATACCTTAG---------AA-------Tcaagat-cagatagctatatgaatccaggcc--------------ttttatttaattgat---aacaataaatcgag--------tacagttgatgtacaaatactgtggctcaaat--aagatttaggtgtatatgcagcttttatATTCTCCTTGGGTTGCCAGTCATTAAA------TATTTTATGATCTATTTCTAATGAAATTAGACTTAGACTCCATTAAT---TAAAATTACTGATGGCCTATAACTACTAGCCTGACACTGACATGGAGCTAATCATTGACACCAATAGTAGCTATATGACTATGCCTGATTGATCTTCTAGTTAATAATTAGGTAAAACTTTTAAAATGTTAGCTGGTACATACTTGAATCAATGGGGCCATATACTGGATACCTGAGATACTGGCATTTTCTTTTCCTCTTT-GAAAGCCCTGTAATTCTCCTTTCCAACATGTCTGTGGTATAA--ATAGGGCAGATATT--ATGCTTTGCACTGACACCGAAGTAATCT--ATTTGTTGGGCTGAAGGCATTCATGAGGAATGTATTGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139017004 554 + 157549271 aGTGTTCAGAAGCATTCTAATACCTTAA---------AA-------Tcaagat-cagatagctatatgaatccaggcc--------------ttttatttaattgat---aacaataaatcgag--------tacagttgacgtacaaatactgtggctcaaat--aagatttaggtgtatatgcagcttttatattttccttgggttggcagtcattaaatattcttattttatgatctatttctaatgaaattagacttagactcaattaat---taAAATTACTGATGGCCTATAACTACTAGCCTGACACTGACATGGAGCTAATCATTGACACCAATAGTAGCTATATGACTATGCCTGATTGATCTTCTAGTTAATAATTAGGTAAAACTTTTAAAATGTTAGCTGGTACATACTTGAATCAATGGGGCCATATACTGGATACCTGAGATACTGGCATTTTCTTTTCCTCTTT-GAAAGCCCTGTAATTCTCCTTTCCAACATGTCTGTGGTATAA--ATGGGGCAGATATT--ATGCTTTGCACCGACACTGAAGTAATCT--ATTTGTTGGACTGAAGCCATTCATGAGGAATGTATTGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93138139 546 + 110113093 aGTGTTCAGAAGCATTCTAATACCTTAG---------AA-------TCAAGAT-CAGATAGCTATATGAATCCAGGCC--------------TTTTATTTAATTGAT---AACAATAAATCGAG--------TACAGTTGATGTACAAATACTGTGGCTCAAAT--AAGATTTAGGTGTATAGGCAGCTTTTATATTTTCCTTGGGTTGGCAGTCATCAAA------TATTTTATGATGTATTTCTAATGAAATTAGACTTAGACTCAATTAAT---TAAAATTACTGATGGCCTATAACTACTAGCCTGACACTGACAAGGAGCTAATCATTGACACCAATAGTAGCTATATGACTATGCCTGATTGATCTTCTAGTTAATAATTAGGTAAAACTTTTAAAATGTTAGCTGGTAAATACTTGAATCAATGGGGCCGTACACTGGATACCTGAGATACTGGCATTTTCTTTTCCTCTTTGGAAAGCCCTGTAATTCTCCTTTCCAACATGTCTGTGGTATAA--ATGGGGCAGA---T--ATGCTTTGCACTGACACTGAAGTAATCT--ATTTGTTGGACTGAAGCCATTCATGAGGAATGTATTGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181032077 553 + 198365852 GGTGTTCAGAAGCATTCTAATACCTTAG---------AA-------TCAAGAT-CAGATAGTTATATGAATCCAGGCC--------------TTTTATTTAATTGAG---AACAATAAATCGAG--------TACAGTTGATGTACCAATACTgtggctcaaat--aagatttaggtttatatgcagcttttatattttccttgggttggcagtcattaaatattcttattttatgatctatttctaatgaaattagacttagactcaattaaattataaaatAACTGATGGCCTATAACAACTAGCCCGACACTGACATGGAGCTAATCATTGACACCAATAGTAGCTATATGACTATGCC----TGATCTTCTAGTTAATAATTAGGTAAAACTTTTAAAATGTTAGCTGGTACATGCTTGAATCAATGGGGCCATATACTGGATACCTGAGATACTAGCATTTTCTTTTCCTCTTT-GAAAGCCCGGTAATTCTCCTTTCCAACATGTCTGTGGTATAG--ATGGGGCAGATATT--ATGCTTTGCACTGACACAGAATTAATCT--ATTTGTTGGACTGAAGCCATTCATGAGGAATGTATTCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174780172 553 + 192294377 GGTGTTCAGAAGCATTCTAATACCTTAG---------AA-------TCAAGAT-CAGATAGTTATATGAATCCAGGCC--------------TTTTATTTAATTGAG---AACAATAAATCGAG--------TACAGTTGATGTACCAATACTGTGGCTCAAAT--AAGATTTAGGTTTATATGCAGCTTTTATATTTTCCTTGGGTTGGCAGTCATTAAATATTCTTATTTTATTATCTATTTATAATGAAATTAGACTTAGACTCAATTAAATTATAAAATAACTGATGGCCTATAACAACTAGCCCGACACTGACATGGAGCTAATCATTGACACCAATAGTAGCTATATGACTATGCC----TGATCTTCTAGTTAATAATTAGGTAAAACTTTTAAAATGTTAGCTGGTACATGCTTGAATCAATGGGGCCATATACTGGATACCTGAGATACTAGCATTTTCTTTTCCTCTTT-GAAAGCCCGGTAATTCTCCTTTCCAACATGTCTGTGGTATAG--ATGGGGCAGATATT--ATGCTTTGCACTGACACAGAATTAATCT--ATTTGTTGGACTGAAGCCATTCATGAGGAATGTATTCA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163448665 557 + 180432695 ggtgttcagAAGCATTCTAATACCTTAG---------AA-------TCAAGAT-CAGATAGTTATATGAATCCAGGCC--------------TTTTATTTAATTGAT---AACAATAAATCGAG--------TACAGTTGATGTACCAATACTGTGGCTCAAAT--AAGATTTAGGTGTATATgcagcttttatattttctttgggttggcagtcattaaatattcttattttatgatCTATTTCTAATGAAATTAGTCTTAGActcaattaaattataaaataactgaTGGCCTATAACAACTAGCCCGACACTGACATGGAGCTAATCATTGACACCAATAGTAGCTATATGACTATGCCTGATTGATCTTCTAGTTAATAATTaggtaaaacttttaaaatgttagctGGTACATGCTTGAATCAATGGGGCCATATACTGGATACCTGAGATactagcattttcttttcctcttt-gaaaGCCCTGTAATTCTCCTTTCCAACATGTCTGTGGTATAG--ATGGGGCAGATATT--ACGCTTTGCACTGACACAGAATTAATCT--ATTTGTTGGACtgaagccattcatgaggaatgtATTCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110477124 558 + 127223203 aGTGATCAGAAGCATTCTAATACCTTAG---------AA-------Tcaagat-cagatagttatatgaatccaggcc--------------ttttatttaattgataacaacaataaatcgag--------tacagttcatgtaccaatactgtggctaaaat--aagatttaggtgtatatgcagcttttatattttccttaggttggcagttattaaatattcttattttatgatctatttctaacgaaattagacttacactcaattaaat--taAAATAACTGATGGCCTATAACTACTAGCCCGACACTGACATGGAGCTAATCATTGACACCAATAGTAGCTATATGACTATGCCTGATTGATCTTCTAGTTAATAATTAGGTAAAACTTTTAAAATGTTAGCTGGTACATGCTTGAATCAATGGGGCCATATACTGGATACCTGAGATACTAGCATTTTCTTTTCCTCTTT-GAAAGCCCTGTAATTCTCCTTTCCAACATGTCTGTGGTATAG--ATGGGGCAGATATT--ACGCTTTGCACTTACACTGAATTAATCT--ATTTGTTGGACTGAAGCCATTCATGAGGAATGTATTCA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23820350 526 - 128169293 AGTGTTCAGAAGCATTCTAATACCTTAG---------AA-------TCAAGAT-CAGATAGTTATATGAGTCCAGGCC--------------TTTTATTTAATTGATAACAACAATACATCGAG------TCTCCAGGTGATGTACAGCTCCGGTAGCTGAAAT--AAGGTTTGGGGGTAGATGCAGCGTTTACCTTTTCCTTGGGTTGGCAATCATTAAATGTTCTTATTTCATAATCTAGTTTTAATAAAATTGGACTTAGACTCAATTATAT--TAAAATTACAGATGGCCTATAACTATTAGCCTGACACTAACATGGAGCTAATCGTTGACACCAATAGTAGGT--------------GATTGATCTTCTGGTTAAGAATTAGGTAAAACTTTAAAAATGTTAGCTGATACATACTTGAATCAATGGGGCCATGTACT--------------------TTTTCTTTTCCTCTTT-GAAAACCCTGTAATTCTCCTTTCCAACATGTCTGTGGTATAG--ATAGGGCAGATACC--ATGCTTTGCACTGACACCAGAGTAATCT--ATTTGTTGGACTGAAGCCATTCATGAGGCATGTATTGA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40460435 494 + 149736546 AGTGTTGAGAAACATTCTAACACCTGAG---------GGTGGGTGTTTAAGCC-TAGGCA-TGGCATGAACTCGGAAC--------------TTCAGTTTTATTGATGACAAAGATAAATCAAG---------ACAGTC----TACAGACAGTGTGA---AAATAGAGGATTCAGGCATAATAAGAGCTTTTAACATTTC--TGAGT---CAACCTTTACAT-TTCTAATTTTATGATCTATCATTAATGAAATAAGGGTCACAC------------TGAAGTTACTAATGCTCTGTAATTATTAGTCTGACATTGACAGAGGATTGATTATGAAC----CTAATAACTACCCAAGTTGGCTTGATTG-TCATATGGTTAATAATTAAGTAAAATTCTTAAAATGTTAGTAGTCACATACCTGAGGCAGTAGGGCCACATACT--------GAGAAACTAGAATTGTATTTT--GCTTT-CAAATTCCTGAAAT---------CATAGCATCTATGGCTTCATTGTAGGGCTGATATTGAATGCTCTGCCCTGACCCTGAACTAATT------------------------------GGATGTGTTCA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52157665 579 -  59632846 AGGGTTCAGAAGCATTCTAATACCTTAGGAAAGGGGCAA-------ACAAGATCCAGATGGTCAGATGAGTCCAGGCCTTTTTTTTTTTTTTTTttttttaacttataacaatgataaatcaggagcctatctatagttgataagcaaatactatggctcaaat--aggatttaggtatatattgaaatttcatattttccttgggtcagcaatcattaaatatcctgattttgttagatatttttaatggaattaaactCAGAATCAATTTCAT--TAAAGTTACAAGTAGCCTATAATTACTAGCTTGATGCT------GAATTAATCATCAATGCCAGCAGTAGTTATTTGTCTAGGCCTGATTGAGCTTCTGGTTAATCATTAGATAACAATTTTAAAATGTTAGCTGGGGCAGACTCAAGGCAATAGAACCATATATTGGATACCTGCAGTA-TGGCATTTTATTTT---CTTT-AAAAGTCCTGTAGTTCTTC--TCCAACACATCTGTGGAATAG--ATGGGGCCAAAATT--ATGTTTTACACTAAAACTGAA-TAATCTAGACTTGTTGGATTAAACCCCTTCATAAGAATTTTCTTAA
i canFam3.chr16            C 0 C 0

a score=300312.000000
s hg38.chr7_GL383534v2_alt     95566 102 +    119183 TCAGAGtactatgccattttatacaaggctcttgggcatttggggctttgatatctgcaggaggtcctggaactaataccctgaagatataggaggccaatt
s panTro4.chr7             143195441 102 + 161824586 TCAGagtactatgccattttatacaaggctcttgggcatttggggctttgatatctgcaggaggtcctggaactaatcccctaaagatataggaggccaatt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139017558 102 + 157549271 TCATagtactatgccattttatacaaggctcttgggcatttggggctttgatatctgcaggaggtcctggaactaatcccctgaggatatgggaggccaatt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93138685 102 + 110113093 TCATAGtactatgccattttatacaaggctcttgggcatttggggctttgatatctgcaggaggtcctggaactaataccctgaggatatgggaggccaatt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181032630 102 + 198365852 TTATagtactatgccattttatacaaggcacttgggcatttggggctttggtatctgcaggaggtcctggaactaatcccctgaggatatgggaggccaatt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174780725 102 + 192294377 TTATAGtactatgccattttatacaaggcacttggacatttggggctttggtatctgcaggaggtcctggaactaatcccctgaggatatgggaggccaatt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163449222 102 + 180432695 TTATagtactatgccattttatacaaGGCACTTGGGCATTTGGGGCTTTGGTATCTGCAGGAGGTCCTGGAACTAATCCCCTGAGGATATGGGAGGCCAATT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110477682 102 + 127223203 TTATagtactatgccattttatacaaggcacttgggcatttggggctttggtatctgcaggaggtcctggaactaatcccctgaggatatgggaggccaatt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23820876 102 - 128169293 CTATagtactatgtcattttatataagggacttgggcatttggggctttggtagctgcagggggtcctgaaactaatcccctgaggatatgggaggccaact
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40460929  27 + 149736546 -------------------------------------------------------------AGTCTCTGATAATCATTTCCTGTGCAT--------------
i mm10.chr6                C 0 C 0
e canFam3.chr16             52158244   0 -  59632846 C

a score=2525933.000000
s hg38.chr7_GL383534v2_alt     95668 697 +    119183 gTATTTACTATGCTTTCATCTAT-AAGACTCATAC-------------TGTGGGGCTGTTCTCTGTTGTTCTTTCCCAGGTGGGAGTTTGCAAGCTGCTATATCTGAAAACACTAAGTCTGGCAATCATTTTGAAGAGCCAAAACTCAAGGACATCCTTCTACAGATTTCCCTTGGCCTTAATTACATCCACAACTCTAGCATGGTACACCTGGACATCAAACCTAGTCAGTGTGATTCCCTTCTGCCACTTCTACCGTATTTTGTTCTTTCTATGCTATCATCAAAATCTAGGTCTGTATGTCTATCAAGTGTCAAGGACGGTGTTTGCTGGC-AGAACCCCTTTCTTCCATTTGTGTTCCTTAAAAAAAA-TCAGTTAAATAGTTTTA-----TTCTCCCCTAGGCCCAACAGACATAG----AAAAAAAGACTCTTACCCATATAGTAGTAAGGCC--AAAAAAGTAAAATTAGGTATTTAATTTACTACAAAGGCAAGTGACAGCATATCAGCTACATTCTGATTATGTTTATGACTAGGGC----TATACTCATTCTAACTCTG--CACTGAT------TAAAG-----AGAAATGAGTAAC---TGTCACTCATTAATGTGAAA-CCCAAGGACAAGTTCTTACTA-------TTTTTTT-ATTTTGGGGACA---ATAGTACTCTGA---TACCAGTCCCATCAGAGAATGGAGAATATATGAGATCAGTTGAACTT-AAATAGGTATTATCA
s panTro4.chr7             143195543 699 + 161824586 gTATTTACTATGCTTTCATCTAT-AAGACTCATAC-------------TGTGGGGCTATTCTCTGTTGTTCTTTCCCAGGTGGGAGTTTGCAAGCTGCTATATCTGAAAACACTAAGTCTGGCAATCATTTTGAAGAGCCAAAACTCAAGGACATCCTTCTACAGATTTCCCTTGGCCTTAATTACATCCACAACTCTAGCATGGTACACCTGGACATCAAACCTAGTCAGTGTGATTCCCTTCTGCCACTTTTACCGTATTTTGTTCCTTCTATGCTATCATCAAAATCTAGGTCTGTATGTCTATCAAGTGTCAAGGACGGTGTTTGCTGGC-AGAACCCCTTTCTTCCATTTGTGTTCCTTAAAAAAAAATCAGTTAAATAGTTTTA-----TTCTCCCCTAGGCCCAACAGACATAG----AAAAAAAGACTCTTACCCATATAGTAGTAAGGCC--AAAAAAGTAAAATTAGGTATTTAATTTTCTACAAAGGCAAGTGACAGCATATCAGCTACATTCTGATTGTGTTTATGACTAGGGC----TATACTCATTCTAACTCTG--CACTGAT------TAAAG-----AGAAATGAGTAAC---TGTCACTCATTAATGTGAAA-CCCAAGGACAAGTTCTTACTA-------TTTTTTTTATTTTGGGGACA---ATAGTACTCTGA---TACCAGTCCCATCAGAGAATGGAGAATATATGAGATCAGTTCAACTT-AAATAGGTATTATCA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139017660 695 + 157549271 gTATTTACTATGCTTTCATCTAT-AAGACTCATAC-------------TGTGGGGCTATTCTCTGTTGTTCTTTCCCAGGTGGGAGTTTGCAAGCTGCTATATCTGAAAACACTAAGTCTGGCAATCATTTTGAAGAGCCAAAACTCAAGGACATCCTTCTACAGATTTCCCTTGGCCTTAATTACATCCACAACTCTAGCATGGTACACCTGGACATCAAACCTAGTCAGTGTGTTTCCCTTCTGCCACTTCTACCGTATTTTGTTCTTTCTGTGCTATCATCAAAATCTAGGTCTGTATGTCTATCAAGTATCAAAGACAGTGTTTGCTGGC-AGAACCCCTTTCTTCCATTTGTGGTTCTTAAAAAA---TCAGTTAAATAGCTTTA-----TTCTCCCCTAGGCCCAACGGACATAG----AAAAAAAGACTCTTACCTATATAGTAGTAAGGCC--AAAAAAGTAAAATTAGGTATTTAATTTACTACAAAGGCAAGTGACAGCATATCAGCTACATTCTGATTGTGTTTACGACTAGGAC----TATACTCATTCTAACTCTG--CACTGAT------TAAGG-----AGAAATGAGTAAC---TGTCACTCATTAATGTGAAACCCCAAGGACAAGTTCTTACTA-------TTTTTTT-ATTTTGGGGACA---ATAGTACTCTGA---TACCAGCCCCTTCAGAGAATGGAGAATATATGAG-TCAGTTCAACTT-AAATAGGTATTGTCA
i ponAbe2.chr7             C 0 I 356
s nomLeu3.chr13             93138787 698 + 110113093 gTATTTACTATGCTTTCATCTAT-AAGACTCATAC-------------TGTGGGGCTATTCTCTGTTGTTCTTTCCCAGGTGGGAGTTTGCAAGCTGCTATATCTGAAAACACTAAGTCTGGCAATCATTTTGAAGAGCCAAAACTCAAGGACATCCTTCTACAGATTTCCCTTGGCCTTAATTACATCCACAACTCTAGCATGGTACACCTGGACATCAAACCTAGTCAGTGTGATTCCCTTCTGCCACTTCTACCGTATTTTGTTCTTTCTATGCTATCATCAAAATCTAGGTCTGTATGTCTATCAAGTGTCAAAGACAGTGTTTGCTGGC-AGAACCCCTTTCTTCCATTTGTGTTCCTTAAAAAAAAATCAGTTAAGTAGCTTTA-----TTCTCCCCTAGGCCCAATGGACATAG----AAAAAAAGACACTTACCCATATAGTAGTAAGGCC--AAAAAAGTAAAATTAGGTATTTAATTTACTACAAAGGCAAGTGACAGCATATCAGCTACATTCTGATTGTGTTTATGACTAGGGC----TATACGCATTCTAACTCTG--CACTGAT------TAAGG-----AGAAATGAGTAAC---TGTCACTCATTAATGTGAAA-CTCAAGGACAAGTTCTTACTA-------ATTTTTT-ATTTTGGGGACA---ATAGTACTCTGA---TACCAGCCCCTTCAGAGAATGGAGAATATATGAGGTCAGTTCAACTT-AAATAGGTATTATCA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181032732 700 + 198365852 gTATTTACTGTGCTTTCATCTGT-AAAACTCGTAC-------------TGTGGGGCTATTCTCCGTTGTTCTTTCCCAGGTGGGAGTTTGCAAGCTGCTATATCTGAAAACACTAAATCTGGCAATCATTTTGAAGAGCCAAAACTCAAGGACATCCTTCTACAGATTTCCCTTGGACTTAAGTACATCCACAACTCTGGCATGGTACACCTGGACATCAAACCTAGTCAGTGTGATTCCCTTCTGCCACTTCTACCATATTTTGTTCTTTCTATGCTATCATCAAAATCTAGGTCTGTATGTCTACCAAGTGTCAAAGACAGTGTTTGCTGGCAAGAACCCCTTTCTTCCATTTGTGTCCCTTTAAAAAA--TCAGTTAAATAGCTTTAACCA-TTCTCTCCTAGGCCCAACGGACATAGAGAAAAAAAAAGACTCTTACCCATATA-TAGTAAGGCC--AAAAAGGTAAAATTAGGTATTTAATTTACTACAAAGGCAAGTGACAGCATATCAGCTACATTCTGATTGTGTTTATGACTAGGGC----CATACTCATTCTAACTCTG--CACTGAT------TAAGG-----AGAAATGAGTA-------TCGCTCATTAATGTGAAA-CCCAAGGACAAGTTCTTACTA-------TTTTTTT-ATTTTGGGGACA---ATAGTACTTTGA---TGCCAGCCCCTTCAGAGAATGGAGAATATATGAGGTCAGTTCAACTT-AAATAGGTATGATCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174780827 700 + 192294377 gTATTTACTGTGCTTTCATCTGT-AAAACTCGTAC-------------TGTGGGGCTGTTCTCCGTTGTTCTTTCCCAGGTGGGAGTTTGCAAGCTGCTATATCTGAAAACACTAAATCTGGCAATCATTTTGAAGAGCCAAAACTCAAGGACATCCTTCTACAGATTTCCCTTGGACTTAAGTACATCCACAACTCTGGCATGGTACACCTGGACATCAAACCTAGTCAGTGTGATTCCCTTCTGCCACTTCTACCATATTTTGTTCTTTCTATGCTATCATCAAAATCTAGGTCTGTATGTCTACCAAGTGTCAAAGACAGTGTTTGCTGGCAAGAACCCCTTTCTTCCATTTGTGTCCCTTTAAAAAA--TCAGTTAAATAGCTTTAACCA-TTCTCTCCTAGGCCCAACGGACATAGAGAAAAAAAAAGACTCTTACCCATATA-TAGTAAGGCC--AAAAAGGTAAAATTAGGTATTTAATTTACTACAAAGGCAAGTGACAGCATATCAGCTACATTCTGATTGTGTTTATGACTAGGGC----CATACTCATTCTAACTCTG--CACTGAT------TAAGG-----AGAAATGAGTA-------TCGCTCATTAATGTGAAA-CCCAAGGACAAGTTCTTACTA-------TTTTTTT-ATTTTGGGGACA---ATAGTACTTTGA---TGCCAGCCCCTTCAGAGAATGGAGAATATATGAGGTCAGTTCAACTT-AAATAGGTATGATCA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163449324 699 + 180432695 GTATTTACTGTGCTTTCATCTGT-AAAACTCGTAC-------------TGTGGGGCTATTCTCCGTTGTTCTTTCCCAGGTGGGAGTTTGCAAGCTGCTATATCTGAAAACACTAAATCTGGCAATCATTTTGAAGAGCCAAAACTCAAGGACATCCTTCTACAGATTTCCCTTGGACTTAAGTACATCCACAACTCTGGCATGGTACACCTGGACATCAAACCTAGTCAGTGTGATTCCCTTCTGCCACTTCTACcatattttgttctttctatGCTATCATCAAAATCTAGGTCTGTATGTCTACCAAGTGTCAAAGACAGTGTTTGCTGGCAAGAACccctttcttccatttgtgtccctttaaaaaa--tcagttaaataGCTTTAACCG-TTCTCTCCTAGGCCCAAcgg--atagagaaaaaaaaagactcttacCCATATA-TAGTAAGGCC--AAAAAGGTAAAATTAGGTATTTAATTTACTACAAAGGCAAGTGACAGCATATCAGCTACATTCTGATTGTGTTTATGACTAGGGC----CATACTCATTCTAACTCTG--CACTGAT------TAAGG-----AGAAATGAGTA-------TCGCTCATTAATGTGAAA-CCCAAGGACAagttcttacta------tttttttt-attttggggacA---ATAGTACTTTGA---TGCCAGCCCCTTCAGAGAATGGAGAATGTATGAGGTCAGTTCAACTT-AAATAGGTATGATCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110477784 697 + 127223203 gTATTTACTGTGCTTTCATCCAT-AAGACTCGAAT-------------TGTGGGGCTATTCTCCGTTGTTCTTTCCCAGGTGGGAGTTTGCAAGCTGCTATATCTGAAAACACTAAGTCTGGCAATCATTTCAAAGAGCCAAAACTCAAGGACATCCTTCTACAGATTTCCCTTGGACTTAAGTACATCCACAACTCTGGCATGGTACACCTGGACATCAAACCTAGTCAGTGTGATTCCCTTCTGCCACTTCTACCATATTTTGTTCTTTCTACTCTATCATCAAAATCTAGGTCTGTCTGTCTACCAAGTGTCAAAGACAGTGTTTACTGGCAAGAACCCTTTTCTTCCATTTGTGTCCCTTAAAAAAA--TCAGTTAAATAGCTTTAACCA-TTCTCCCCTAGGCCCAACGGACATAGAG-AAAAAAAAGACTCTTACCC--ATA-TAGTAAGGCC--AAAAAGGTAAAATTAGGTATTTAATTTACTACAAAGGCAAGTGACAGCATATCAGCTACATTCTGATTGTGTTTATGACTAGGGC----TATACTCATTCTAACTCTG--CACTGAT------TAAGG-----AGAAATGAGTA-------TCACTCATTAGTGTGAAA-CCCAAGGACAAGTTCTTACTA-------TTCTTTT-ATTTTGGGGACA---ATAGTACTCTGA---TGCCAGCTCCTTCAGAGAATGGAGAATGTATGAGGTCAGTTCAACTT-AAATAGGTATGATCA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23820978 721 - 128169293 gTATTTCCTGTGCTTTCACCTGT-AAGACTCATACTTTTCTCTCATTTTGTGGGGCTGTTCTCTGTTGTTCTTTCCCAGGTGGGAGTTTGCAAGCTGCTATATCTGAGAACACTAAGTTTCACAAACATTTCCAAGAGCCAAAACTCAAGGACATCCTTCTACAGATTTCCCTTGGACTAAAGTACATTCACAACTCTGGCATGGTACACCTGGACATCAAACCTAGTCAGTATGATTCCCTTCTGCCACTTCTACCGTATTTTGTTCTCTCTATGCTATCATAAAAATCTGGGTCTATATGTCTACCAAGTGTCAAAGACAGTGTTTGCTGGC-AGAACTCCTTTCTTCCATTTGTGTCCCTTAAA------TCAGTTAAATAGCTTTAACCA-TTTTCTCCTAGGTCCAGGAGACAGAG-AAAAAAAAAAGACTCTTACCGATA---TAGTAAGGCCAAAAAAAGGTGAAAATTGGTATTTAATTTACTACAAAGACAAGTGACAGCATATCAGCTACATTCCAATTGTGTTTATGACTAGTAC----TATATTGATCCTAACTCAAGTTACTCATTTAAAGTAAGG-----AGAAATGAGTGACT-TTGTCACTCAATAATGTGAAA-CCCAAGGACAAATTCTTACTA-------TTTTTTT-ATTTTGGGGACA---ATAGTACTCTGA---TACCAGCCTCTTCAGGGAATGGAGACTATATGAGGTCAGTTCAACTT-AAATCGGTATTATCT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40460956 648 + 149736546 ---TTTCACACTTGTTTATCTAT-------------------------TGTGGTGGTATCCACAATTTCTC---CTCAGGTGGGAGCCTGCAAGCTGCTATATCTGAAAACACTGCGTCCAATAATCACTTCCAAGAGCCCAAACTCAAAGACATCCTTCTGCAGATTTCCTTGGGACTTAAGTACATCCACAATTCTGGCATGGTACACCTGGACATCAAACCCAGTTAGTAT-TTTTCCATCTA-TATTCCTGCCATATTTTCTCTTTTATAGACCATCCTGAAAATCCGCCCCTGTATA--CATTCAATCTCAAAGACAGTACTGCCTATA-AGAACCACTTTCTTCCATTTCTTTTCAT--AACAAA--T---TCAAGTATCTTTAATTG-TTCTCTCCTTGAGCCAGGGGATACAAGG--GAAAAAAGACAATTTTTCATGTA-------GAGC--AAAAGTATTAAACTAGACATTTAATTTACCA----------------CATGTTGGCCATATTCTGATTGTG-TGGTAACTAGTAC----TGTGCTT-TTCTAAGTCAT--CCGTGCG------CAGGG-----TGAACAGAATAAGTGTGATCACT------TATGAAG-CCTAAGGAGAAGTTATTATTTTATGGGTTTTGTTT-ATTTTGAG-------ACAGCA---TGT---CACCATGCTCTCCAGAGGATGGGGATTGTATGAGGGTGGTTCATCTT-AAACACATGTTAATC
i mm10.chr6                C 0 I 1
s canFam3.chr16             52158244 719 -  59632846 ATGTTTATTATGCTTTTATCTATTCAGATTCATACCTTTTCTCCATTCTGCGGGGCTGCTCTCTGTTGTTCCTTCCTAGGTGGGAGCTTGCAGACTGCTATATCTGAAAATACAAAGTCTGGCAATCATTTCCCAGAGCTGAAACTCAAGGACATCCTTCTGCAGATTTCCCTTGGGCTTAAGTACATCCACAACTCTGGCATGGTGCATCTGGACATCAAACCTAGTCAGTATGGCTCCC-TCTGCTCCTCTCAACAGATTTATTTCTCTCTCCGCTAT-GTCAGAGTTGGTGCCTGCGTGTCTACTAAGCATTGAAGATGCTGTTTGCTGGC-AAAATCTGTTTCCTTCTTTTGTTTCCCT--AAAAAA--T---TTAAACGGCTTTATCTATTTTTGCCCTGGGCCCAGGGGACAGAG---AGACAGAAGACTCTTTCCCAGA---CAGCGAAGCC---AAAGTATGAAAATAGGTCTCTAACTTACTGCATAGCTAAGTGACAGCATATTGGCTGCATCTGGAATGTATTGACAACTAGTGCTGTATATACTCTTTCTAATTCAG--CACTGAC------TAAAGTGAACAGAAATGAATGGT-TTTGGCACTC---AATGTGAAA-CTCCAGGAAATGATGTTACCA-------TTTTTTT--TTTCAGGCTTATTTTTTTTGTTCTGAGGCTACTAGCCTCTTCAGAGGATGGAATGTGTCTGAGGTCAGTTTCACTCAAAATAGGTATCCTCA
i canFam3.chr16            C 0 C 0

a score=1898899.000000
s hg38.chr7_GL383534v2_alt     96365 534 +    119183 ATCACT-AGCTGTTCAGAAGCGATGTGAGATTTCATACA-----------------AAAAAAAAA--------------------------------------------------------CCTTAGTAGT---------------------------------------------------------------------------CTATGTCCACACAAAAGAAG----------------------------------AAAGGAGAGAAGCTGAATTGTCAAATACAGAAAAGAATCTTTGAGAGGAAAAAGCTTAGAAGTCATTACTTACATCTATCCTGTCA-------TTTTTTTTT---CAGGTAATATATTCATTTGTCACAAGATGCAAAGTGAATCCTCTGGAGTCATAGAAGAAGTTGAAAATGAAGCTGATTGGTTTCTCTCTGCCAATGTGATGTATAAAATTGGTTAGTCTGCCTTATAGCCTTACCAGTTACCATTATCCTATAAAATTTATAGTGATGACTCAATTTATTC--ATTTTAAGAAAGACATGCTTTT--AAA---GCtcttttgttcgattt---tattcttttttcctttt-----tcttttttttAGGTGACCTGGGCCACGCAACATCAATAAACAAACCCAAAGTGGAAGAAGGAGATAGTCGCTTCCTGGCTAATGAGATTTTGCAAGAGGTATAGATTAGGGAAATG----GAGGGT
s panTro4.chr7             143196242 534 + 161824586 ATCACT-AGCTGTTCAGAAGCGATGTGAGATTTCATACA-----------------AAAAAAAAA--A-----------------------------------------------------CCTTAGTAGT---------------------------------------------------------------------------CTATGTCCACACAAAAGAAG----------------------------------AAAGGAGAGAAGCTGAATTGTCAAATACAGAAAAGAATCTTTGAGAGGAAAAAGCTTAGAAGTCATTACTTACATCTATCCTGTCA-------TTTTTTTTT---CAGGTAATATATTCATTTGTCACAAGATGCAAAGTGAATCCTCTGGAGTCATAGAAGAAGTTGAAAATGAAGCTGATTGGTTTCTCTCTGCCAATGTGATGTATAAAATTGGTTAGTCTGCCTTATAGCCTTACCAGTTACCATTATCCTATAAAATTTATAGTGATGACTCAATTTATTC--ATTTTAAGAAAGACATGCTTTT--AAA---GCTCTTTTGTTCGATTT---TATTCTTTTTTCCTTTT-----TCTTTTTTT-AGGTGACCTGGGCCACGCAACATCAATAAACAAACCCAAAGTGGAAGAAGGAGATAGTCGCTTCCTGGCTAATGAGATTTTGCAAGAGGTATAGATTAGGGAAATG----GAGGGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139018711 546 + 157549271 ATCACT-AGCTGTTCAGAAATGATGTGAGATTTCATAGA-----------------AAAAAAAAA--A-----------------------------------------------------CCTTAGTAGTC-----------------------------------------------------------------------TTGCTATGTCCACACAAAAGAAG----------------------------------AAAGGAGAGAAGCTGAATTGTCAAATACAGAAATGAATCTTTGAGAGGAAAAAGCTTAGAAATCATTACTTACATCTATCCTGTCT-------TTTTTTTTTTTCCAGGTAATATCTTCATTTGTCACAAGATGCAAAGTGAATCCTCTGGAGTCATAGAAGAAGTTGAAAATGAAGCTGATTGGTTTCTCTCTGCCAATGTGATGTATAAAATTGGTTAGTCTGCCTTATAGCCTTACCAGTTACCATTATCCTATAAAATTTATACTGATGACTCAATTTATTC--ATTTTAAGAAAGACATGCTTTT--AAA---GCTCTTTTGTTTGATTT---TATTCTTTTTTCCTTTTTCCTATCTTTTTTT-AGGTGACCTGGGCCACGCAACATCAATAAACAAACCCAAAGTGGAAGAAGGAGATAGTCGCTTCCTGGCTAATGAGATTTTGCAAGAGGTATAGATTAGGGAAATG----GAGGGT
i ponAbe2.chr7             I 356 C 0
s nomLeu3.chr13             93139485 541 + 110113093 ATCACT-AGTTGTTCAGAAGTGATGTGAGATTTCATAGA-----------------AAAAAAAAAAAA-----------------------------------------------------CCTTAGTAGTC-----------------------------------------------------------------------TTGCTATGTCCACACAAAAGAAG----------------------------------AA---AGAGAAGCTGAATTGTCAAATACAGAAAAGAATCTTTGAGAGGAAAAAGCTTAGAAATCATTACTTACATCTATCCTGTCT-------TTATTTTTT---CAGGTAATATCTTCATTTGTCACAAGATGCAAAGTGAATCCTCTGGAGTCATAGAAGAAGTTGAAAATGAAGCTGATTGGTTTCTCTCTGCCAATGTGATATATAAAATTGGTTAGTCTGCCTTATAGTCTTACCAGTTACCATTATCCTTTAAAATTTATACTGGTGACTCAATTTATTC--ATTTTAAGAAAGACATGCTTTT--AAA---GCTCTTTTGTTCTATTT---TATTCTTTTTTCCTTTTTTCTATCTTTTTTT-AGGTGACCTGGGCCATGCAACATCAATAAACAAACCCAAAGTAGAAGAAGGAGATAGTCGCTTCCTGGCTAATGAGATTTTGCAAGAGGTATAGATTAGGGAAAT-----GAGGGT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181033432 542 + 198365852 ATCACT-AGCTCTTCAGAAGTGATGTGAGATTTCATAGA-----------------AAAAAAGAA--A-----------------------------------------------------CCTTAGTAGTC-----------------------------------------------------------------------TTGCTATGTCCACACAAAAGAAG----------------------------------AAAGGAGAGAAGCTGAATTGTCAAATACAGAAAAGAATCTTTGAGATGAAAAAGCTTAGAAATCATTGCTTACATCTATCCTGTGA---TTTTTTTTTTTTT---CAGGTAATATCTTCATTTGTCACAAGATGCAAAGTGACTCCCCTGGAGTCACAGAAGAAGTTGAAAATGAAGCTGATTGGTTTCTCTCTGCTGATGTGATATATAAAATCGGTTAGTCTGCCTTAGACCCTTAGCAATTACTATTATCCTATAAAATTTATACCGATGACTCAATTTATTCCAGTTTT----AAGACAGGCTTTT--AAA---GCTCTTTTTTTCTATTT---TATTG---TTTCCTTTTTCCTATCTTTTTTT-AGGTGACCTGGGCCATGCAACATCAATAAATGAACCCAAAGTGGAAGAAGGAGATAGTCGCTTCCTGGCTAATGAGATTTTACAAGAGGTATAGATTAGGGAAATA----GAGGGT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174781527 542 + 192294377 ATCACT-AGCTCTTCAGAAGTGATGTGAGATTTCATAGA-----------------AAAAAAGAA--A-----------------------------------------------------CCTTAGTAGTC-----------------------------------------------------------------------TTGCTATGTCCACACAAAAGAAG----------------------------------AAAGGAGAGAAGCTGAATTGTCAAATACAGAAAAGAATCTTTGAGATGAAAAAGCTTAGAAATCATTGCTTACATCTATCCTGTGA---TTTTTTTTTTTTT---CAGGTAATATCTTCATTTGTCACAAGATGCAAAGTGACTCCCCTGGAGTCATAGAAGAAGTTGAAAATGAAGCTGATTGGTTTCTCTCTGCTGATGTGATATATAAAATCGGTTAGTCTGCCTTAGACCCTTAGCAATTACTATTATCCTATAAAATTTATACTGATGACTCAATTTATTCCAGTTTT----AAGACATGCTTTT--AAA---GCTCTTTTTTTCTATTT---TATTA---TTTCCTTTTTCCTATCTTTTTTT-AGGTGACCTGGGCCATGCAACATCAATAAATGAACCCAAAGTGGAAGAAGGAGATAGTCGCTTCCTGGCTAATGAGATTTTACAAGAGGTATAGATTAGGAAAATA----GAGGGT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163450023 541 + 180432695 ATCACT-AGCTCTTCAGAAGTGATGTGAGatttcataga-----------------aaaaaagaa--a-----------------------------------------------------ccttagtAGTC-----------------------------------------------------------------------TTGCTATGTCcacacaaaagaag----------------------------------aaaggagagaagctgAATTGTCAAATACAGAAAAGAATCTTTGAGATGAAAAAGCTTAGAAATCATTGCTTACATCtatcctgtgatttttttttttttttt---caggtaataTCTTCATTTGTCACAAGATGCAAAGTGACTCCCCTGGAGTCATAGAAGAAGTTGAAAATGAAGCTGATTGGTTTCTCTCTGCTGATGTGATATATAAAATCGGTTAGTCTGCCTTAGACCCTTAGCAGTTACTATTATCTTATAAA----ATACTGATGACTCAatttattccagtttt----aagacatgctttt--aaa---gctctttttttctattt---tatta---tttcctttttcctatcttttttt-agGTGACCTGGGCCATGCAACATCAATAAATGAACCCAAAGTGGAAGAAGGAGATAGTCGCTTCCTGGCTAATGAGATTTTACAAGAGGTATAGATTAGGGAAATA----GAGGGT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110478481 539 + 127223203 ATCACT-AGCTCTTCAGAAGTGATGTGAGATTTCATGGA-----------------AAAAAAGAA--A-----------------------------------------------------CCTTAGTAGTC-----------------------------------------------------------------------TTGCTATGTCCACACAAAAGAAG----------------------------------AAAGGAGAGAAGCTGAATTGTCAAATACAGAAAAGAATCTTTGAGATGAAAAAGCTTAGAAATCA----TTACACCTATCCTGTGA-----TTTTTTTTTTT---CAGGTAATATCTTCATTTGTCACAAGATGCAAAGTGACTCCCCTGGAGTCATAGAAGAAGTTGAAAATGAAGCTGATTGGTTTCTCTCTGCTGATGTGATATATAAAATTGGTTAGTCTGCCTTAGACTCTTACCAGTTACTATTATCCTATAAAATTTATACTGATGACTCAATTTATTCCAGTTTT----AAGACATGCTTTT--AAA---GCTCTTTTTTTCTCTTT---TATTATTCTTTCCTTTTTCCTATCTTTTTTT-AGGTGACCTGGGCCATGCAACATCAATAAACGAACCCAAAGTGGAAGAAGGAGATAGTCGCTTCCTGGCTAATGAGATTTTACAAGAGGTACAGATTAGGGAAATA----GAGTAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23821699 566 - 128169293 ATCACT-AGCTGTTCAGAAGTGATGTGAGATTTCATAGA-----------------AAAAAAGAA--A----------------------------------------------------CCCTTAGTAGTCT---------------------------------------------------------TGGTCATAGTCTTTTGCTATGTCCACACAAAAGAAG----------------------------------AAAGGAGAGAAGCTGAATTGTCAAATACAGAAAAGAATCTTTGAGATGAAAAAGCTTAGAAATCATTACTTACGTCTATTCTGTGA-----TTTTTTTTTTC---CAGGTAATATTTTCATTTGTCACAAGATGCAAAGTGACTCCTCTGGAGTCATAGAAGAAGTTGCAAATGAAGCTGATTGGTTTCTCTCTGCCAATGTGGTGTATAAAATTGGTTAGTCTGCCTTATACCCTTACCAGTCACAATTGTCTTGTAAAATTTATACTGATGACTCAATTTATTC-AGTTTTAAGAAAGACATGCTTTGAAAAA---GCTCTATTTCTCTTTTTTTATACTCTTTTATTCTTTTTTCCATCTTTCTGT-AGGTGACCTGGGCCATGCAACATCAATAAGTAAACCAGAAGTGGAGGAAGGAGATAGTCGCTTCCTGGCTAATGAGATTTTGCAAGAGGTATAGATTAGGGAAATG----GAGGGA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40461605 691 + 149736546 ATGACT-GGCTGTTGTGATCCAATGTAAGAAGTTACAGAGCTGTGTGTGTgtacccaagaggcag--atgcagaacagttttttgtgtgttcaagaccatctacattatgagtttcagacttttcagaagtacacagtgagacAAAGACAGATGGAgagtgagagagggaacaggaaggagggagggagaaagggaaggggggagACCATGTAGAAAAAAAATAAAATTAAAAGATTAGTAGTTATTTTGCAACCATACCAAAGGAGAGAAGCTGGAATGTCATGGCCATGAAAGGCTGCTTATGTAGTGGGAGCCCAGGAATCATTACTTATGTCTACTCTATAT-----------TTTTT---GAGGTAACATCTTCATTTGTCATAAGATGCAGTGTGACTCTCCTGTAGGCCCAGAAGAGGCTGAAAGTGAAGCTGACTGGTTTCTCAATGCCAGTGTGATGTATAAAATTGGTGAGTCTTCTTTTCTATTCCATCAGT--ATATCACTTTATCAA---TAAACTGATAACTATATTTACTCCAACTCCAAGAAAGACATATTCGT--AAAAACACCCTTTCTTTCTCTTT---TAAA----------------------------AGGTGACCTGGGCCACGCGACATCAATCAGCAAACCTAAAGTGGAAGAAGGAGATACTCGTTTCCTGGCTAATGAGATCTTGCAAGAGGTATAAATTAGGGAGACAGGGTGAGGGT
i mm10.chr6                I 1 I 123
s canFam3.chr16             52158963 504 -  59632846 ATCACTGAGCTGTTCAGAAGTAGTGTGA----------------------------GGAAAAGAA--A-----------------------------------------------------TCTTGATAGTC-----------------------------------------------------------------------TTGTTAC----------AAATAC----------------------------------ACAGGAGGGTGGCTAAAATGTCAAA--CAGAAAAGAATCTTTGGGGTGAAAAAGCTAAGGGATCATTACTTAGGTCAATTGTGTAT-----------TTTGT---TAGGTAACATCTTCATTTGTCATAAAATGCAATGCGACTCTCCTGTAGTCCCAGAGGAGATTGAAAATGAAGCTGATTGGTTTCTCTCTGCCAATGTGATGTATAAAATTGGTGAGTTGGCCTTAAGCCCTGAGCTGT--ATATTATCCTGTAAAATTTATAGTGATGACTTCACCTATTTCAGTTTT---AAAGACATGCTTTT--AGA---GAGCTCTAtttctttcc---ttctttttttttttttttcc--------ttc-AGGTGACTTGGGTCATGTGACATCAATAAGCAAACCAAAAGTGGAGGAGGGAGATAGTCGCTTCTTGGCCAATGAGATTTTACAAGAGGTAAAGACTAGGGAAACA----GTGT--
i canFam3.chr16            C 0 C 0

a score=22585.000000
s hg38.chr7_GL383534v2_alt     96899 5 +    119183 ATTTT
s panTro4.chr7             143196776 5 + 161824586 ATTTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139019257 5 + 157549271 ATTTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93140026 5 + 110113093 ATTTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181033974 5 + 198365852 ATTTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174782069 5 + 192294377 ATTTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163450564 5 + 180432695 ATTTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110479020 5 + 127223203 ATTTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23822265 5 - 128169293 ACTTT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40462419 5 + 149736546 ATTCT
i mm10.chr6                I 123 C 0
s canFam3.chr16             52159467 5 -  59632846 ATTTt
i canFam3.chr16            C 0 I 496

a score=165035.000000
s hg38.chr7_GL383534v2_alt     96904 52 +    119183 ATAATCTGTTGAAC--CTTTGACT-CTCAAATGGAGGATCTCAGTGCAAA-AAATT
s panTro4.chr7             143196781 52 + 161824586 ATAATCTGTTGAAC--CTTTGACT-CTCAAATGGAGGATCTCAGTGCAAA-AAATT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139019262 52 + 157549271 ATGATCCGTTGCAC--CTTTGACT-CTCAAATGGAGGATCTCAGTGCAAA-ACATT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93140031 52 + 110113093 ATAATCCGTTGAAT--CTTTGACT-CTCAAATGGAGGATCTCAGTGCAAA-AAATT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181033979 52 + 198365852 ATAATCCGTTGAAC--CTTTGACT-CTCAAATGGAGGATCTCAGTGCAAA-AAATT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174782074 52 + 192294377 ATAATCCGTTGAAC--CTTTGACT-CTCAAATGGAGGATCTCAGTGCAAA-AAATT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163450569 52 + 180432695 ATAATCCATTGAAC--CTTTGACT-CTCAAATGGAGGATCTCagtgcaaa-aaatt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110479025 53 + 127223203 ATAATCCATTGAAC--CTTTGACTCCTCAAATGGAGGATCTCAGTGCAAA-AAATT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23822270 53 - 128169293 ATAATCCATTTAAC--CTCTGACT-ATCAAATGGAGGCTCTCAGTGAAAACAAATG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40462424 54 + 149736546 ATAATTAATTCAACTGTTTTAACT-CTCAAATGAAGGCTTATGGTGCCCC-AAATG
i mm10.chr6                C 0 C 0
e canFam3.chr16             52159472 496 -  59632846 I

a score=3378876.000000
s hg38.chr7_GL383534v2_alt     96956 878 +    119183 AAAACTGTATATTTATCATT-------ATAGTACCGCTCTTCCCATTCAGAATGGAGACCAAAGATAGGAGAGAAACTCTTCCAAAAAA----GTGAGGAAAGCTGGCTCAGTCAAGGATGAATCAGTATTCAGACTATTCTTTCTAAATG---TCCTTTACTGTTTCCCAATATTTCTTAGACTTCCTAACCTCATGGATTGCCTACTAAGAAGGAAGCCTTTTCCTCAAGCCCACATTGGTCCAATCA--ATCTATCATGCCATTATCCTTCTGATAGCACCACCAGTTTTGGTTATTGAAATGATGTTTAGTCATTGCCCATCTTCTCCAATGTCTGTTGAGTCAGGCCTAGGAAGGATATAACTTCTTCCTGGGTGATAATCAAGTAAAAATGAGTATTCCCTTCCTGTGATCAGCCAAGT-TATGTAGCAAGCCTTTCTGAGCCTGAC--AG---CAAAATGGCAGTAAGTTTCTGCCTTGGACTCCTCAGGGCACAGCAGTGTTAATCAGGTAGATTCGTG-------TTCTCT--CTTCTC---TAGAAAT----CACTAACTACAGCGAATGTATC--TTTGACCGTCG-----TGTCTGTTTAAACCTTATATGCACTCGAATGAACCTTTC-CTACCAGTTATATTTTAATCTAGACTCACCCTGCTTGGCATAGTAACTGGCCTTCCTGTCTTCTGTTTTGAAGGATTACCGGCACCTTCCCAAAGCAGACATATTTGCCTTGGGATTAACAATTGCAGTGGCTGCAGGAGCAGAGTCATTGCCCACCAATGGTGCTGCATGGCACCATATCCGCAAGGGTAACTTTCCGGACGTTCCTCAGGAGCTCTCAGAAAGCTTTTCCAGTCTGCTCAAGGTGATAGCTCTTACGAGATGAACAGAAGAT-GCAATATC
s panTro4.chr7             143196833 878 + 161824586 AAAACTGTATATTTATCATT-------ATGGTACCGCTCTTCCCATTCAGAATGGAGACCAAAGATAGGAGAGAAACTCTTCCAAAAAA----GTGAGGAAAGCTGGCTCAATCAAGGATGAATCAGTATTCAGACTATTCTTTCTAAATG---TCCTTTACTGTTTCCCAATATTTCTTAGACTTCCTAACCTCATGGATTGCCTACTAAGAAGGAAACCTTTTCCTCAAGCCCATATTGGTCCAATCA--ATCTATCATGCCACTATCCTTCTGATAGCACCACCAGTTTTGGTTACTGAAATGATGTTTAGTCATTGCCCATCTTCTCCAATGTCTGTTGAGTCAGGCCTAGGAAGGATATAACTTCTTCCTGGGTGATAATCAAGTAAAAATGAGTATTCCCTTCCTGTGATCAGCCAAGT-TATGTAGCAAGCCTTTCTGAGCCTGAC--AG---CAAAATGGCAGTAAGTTTCTGCCTTGGACTCCTCAGGGCACAGCAGTGTTAATCAGGTAGATTCATG-------TTCTCT--CTTCTC---TAGAAAT----CACTAACTACAGTGAATGTACC--TTTGACCGTCG-----TGTCTGTTTAAACCTTATATGCACTCGAATGAACCTTTC-CTACCAGTTGTATTTTAATCTAGACTCACCCTGCTTGGCATAGTAACTGGCCTTCCTGTCTTCTGTTTTGAAGGATTACCGGCACCTTCCCAAAGCAGACATATTTGCCTTGGGATTAACAATTGCAGTGGCTGCAGGAGCAGAGTCATTGCCCACCAATGGTGCTGCATGGCACCATATCCGCAAGGGTAACTTTCCGGACGTTCCTCAGGAGCTCTCAGAAAGCTTTTCCAGTCTGCTCAAGGTGATAGCTCTTACGAGATGAACAGAAGAC-GCAATATC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139019314 878 + 157549271 AAAACTGTATATTTATCATT-------ATAGTACCTCTCTTCCCATTCAGAATGGAGACCAAAGATAGGAGAGAAACTCTTCCAAAAAA----GTGAGGAAAGCTGGCTCAATCAAGGATGAATCAGTATTCAGACTATTCTTTCTAAATG---CCCTTTACTGTTT-CCAATATTTCTTAGACTTCCTAACCTCATGGATTGCCTACTAAGAAAGAAGCCTTTTCCTCAAGCCCATATTGGTCCAATCA-TCTTTATCATGCCATTATCGTTCTGATAGCACCACTAGTTTTGGTTATTGAAATGACGTTTAGTCATTGCCCATCTTCTCCAATGTCTGTTGAGTCAGGCCTAGGAAGGATATAACTTCTTCCTGGGTGATAATCAGATAAAAATGAGTATTTCCTTCCTGTGATCAGCCAAGT-TATGTAGCAAGCCTTTCTGAGCCTGAC--AG---CAAAATGGCAGTAAGTTTCTGCCTTGGACTCCTCAAGGCACAGCAGTGTTAATCAGGTAGATTTATA-------TTCTCT--CTTCTC---TAGAAAT----CACTAACTACAGTGAATGTACC--TTTGGCCATCG-----TGTTTGTTTAGACCTTATATGCACTCGAATGAACCTTTC-CTACTAGTTATATTTTAATCTAGACTCACTCTGCTTGGCATAGTAACTGGCCTTCCTGTCTTCTGTTTTGAAGGATTACCGGCACCTTCCCAAAGCAGACATATTTGCCTTGGGATTAACAATTGCAGTGGCTGCAGGAGCAGAGTCATTGCCCACCAATGGTGCTGCATGGCACCATATCCGCAAGGGTAACTTTCCGGATGTTCCTCAGGAGCTCTCAGAAAGCTTTTCCAGTCTGCTCAAGGTGATATCTCTTACGAGATGAACAGAAGAT-GCAATATC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93140083 880 + 110113093 AAAACTGTATATTTATCATT-------ATAGTACCTCTCTTCCCATTCAGAATGGAGACCAAAGATAGGAGAGAAACTCTTCCAAAAAA----GTGAGGAAAGCTGGCTCAATCAAGGATGTATCAGTATTCAGACTATTGTTTCTAAATG---TCCTTTACTGTTTCCCAATATTTCTTAGACTTCCTAACCTCACGGATTGCCTACTAAGAAGGAAGCCTTTTCCTCAAGCCCATATTGGTCCAATCAATCTTTATCATGCCATTATTGTTCTGATAGCACCATCAGTTTTGGTTATTGAACTGACGTTTAGTCATTGCCCATCTTCTCCAATGTCTGTTGAGTCAGGCCTAGTAAGGATATAACTTCTTCCTGGGTGATAATCAGGTAAAAATGAGTATTTCCTTCCTGTGATCAGCCAAGT-TATGTAGCAAGCCTTTCTGAGCCTGAC--AG---CAAAATGGCAGTAAGTTTCTGCCTTGGACTCCTCAGGGCACAGCAGTGTTAATCAGGTAGGTTTATG-------TTCTCT--CTTCTC---TAGAAAT----CACTAACTACAGTGAATGTACC--TTTGACCATCC-----TGTCTGTTTAGACCTTATATGCACTCGAATGAACCTTTC-CTACCAGTTGTATTTTAATCTAGACTCACTCTGCTTGGCATAGTAACTGGCTTTCCTGTCTTCTGTTTTGAAGGATTACCGGCACCTTCCCAAAGCAGACATATTTGCCTTGGGATTAACAATTGCAGTGGCTGCAGGAGCAGAGTCATTGCCCACCAATGGTGCTGCATGGCACCATATCCGCAAGGGTAACTTTCCGGACGTTCCTCAGGAGCTCTCAGAAAGCTTTTCCAGTCTGCTCAAGGTGATATCTCTTACGAGATGAACAGAAGAT-GCAATATC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181034031 880 + 198365852 AAAACTGTATATTTATCATT-------ATAGTACCTCTCTTCCCATTCAGAATGGAGACCAAAGATAGGAGAGAAACTCTTCCAAAAAA----GTGAGGAAAGCTGGCTCAATTAAGGATGAATCAATATTCAGACTTTTCTTTCTAAATG---CCCTTTACTGTTTCCAGATATTTCTTAGACTTCCTAACCTCATGGGTTGCCTGCTAAGAAGGAAGCCTTTTCCTCAAGCCCATATTGGTGCAGTCCATCTTTATCATGCCATTATCGTTCTGATAGCACCACCAGTTTCAGTTATTGAAATGACGTTTAGTCATTGCCCATCTTCTCCAATGTCTGTTGAGTCAGGCCTAGGGAGGATATAACTTCTTCCTGGGTGATAATCAGGTGAAAATGAGTATTTCCTTCCTGTGATCAGCCAAGT-TATGTAGCAAGCCTTTCTGAGCCTGAC--AG---CAAAATGGCAGTAAGTTTCTGCCTTGGACTCCGCAGGGCACAGCAGTGATAATCAGGTAGATTTATG-------TTCTCT--CTTCTC---TAGAACT----CACTGACTACAGTGAATGTACC--TTTGACCATCA-----TATCTGTTTAGACCTTATATGCACTCGAATGAACCCTTC-CTACCAGTTGTATTTTAATCTAGACTCACTCTGCTTGGCATAGTAACTGGCCTTCCTGTTTTCTGTTTTGAAGGATTACCGGCACCTTCCCAAAGCAGACATATTTGCCTTGGGATTAACAATCGCAGTGGCTGCAGGAGCAGAGTCATTACCCACCAATGGTACTGCATGGCACCATATCCGCAAGGGTAACTTTCCAGATGTTCCTCAGGAGCTCTCAGAAAGCTTTTCCAGTCTGCTCAAGGTGATCTCTCTTACGAGATGAACAGAAGAT-GCAATATC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174782126 880 + 192294377 AAAACTGTATATTTATCATT-------ATAGTACCTCTCTTCCCATTCAGAATGGAGACCAAAGATAGGAGAGAAACTCTTCCAAAAAA----GTGAGGAAAGCTGGCTCAATTAAGGATGAATCAATATTCAGACTTTTCTTTCTAAATG---CCCTTTACTGTTTCCAGATATTTCTTAGACTTCCTAACTTCATGGATTGCCTGCTAAGAAGGAAGCCTTTTCCTCAAGCCCATATTGGTGCAGTCCATCTTTATCATGCCATTATCGTTCTGATAGCACCACCAGTTTCGGTTATTGAAATGACGTTTAGTCATTGCCCATCTTCTCCAATGTCTGTTGAGTCAGGCCTAGGGAGGATATAACTTCTTCCTGGGTGATAATCAGGTGAAAATGAGTATTTCCTTCCTGTGATCAGCCAAGT-TATGTAGCAAGCCTTTCTGAGCCTGAC--AG---CAAAATGGCAGTAAGTTTCTGCCTTGGACTCCGCAGGGCACAGCAGTGATAATCAGGTAGATTTATG-------TTCTCT--CTTCTC---TAGAACT----CACTGACTACAGTGAATGTACC--TTTGACCATCA-----TATCTGTTTAGACCTTATATGCACTCGAATGAACCTTTC-CTACCAGTTGTATTTTAATCTAGACTCACTGTGCTTGGCATAATAACTGGCCTTACTGTTTTCTGTTTTGAAGGATTACCGGCACCTTCCCAAAGCAGACATATTTGCCTTGGGATTAACAATCGCAGTGGCTGCAGGAGCAGAGTCATTACCCACCAATGGTACTGCATGGCACCATATCCGCAAGGGTAACTTTCCAGATGTTCCTCAGGAGCTCTCAGAAAGCTTTTCCAGTCTGCTCAAGGTGATCTCTCTTACGAGATGGACAGAAGAT-GCAATATC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163450621 880 + 180432695 aaaactgtatatTTATCATT-------ACAGTACCTCTCTTCCCATTCAGAATGGAGACCAAAGATAGGAgagaaactcttccaaaaaa----gtGAGGAAAGCTGGCTCAATTAAGGATGAATCAATATTCAGACTTTTCTTTCTAAATG---CCCTTTACTGTTTCCAGATATTTCTTAGACTTCCTAACCTCATGGATTGCCTGCTAAGAAGGAAGCCTTTTCCTCAAGCCCATATTGGTCCAGTCCATCTTTATCATGCCATTATCGTTCTGATAGCACCACCAGTTTCGGTTATTGAAATGACGTTTAGTCATTGCCCATCTTCTCCAATGTCTGTTGAGTCAGGCCTAGGGAGGATATAACTTCTTCCTGGGTTATAATCAGGTGAAAATGAGTATTTCCTTCCTGTGATCAGACAAGT-TATGTAGCAAGCCTTTCTGAGCCTGAC--AG---CAAAATGGCAGTAAGTTTCTGCCTTGGACTCCGCAGGGCACAGCAGTGATAATCAGGTAGATTTATG-------TTCTCT--CTTCTC---TAGAACT----CACTGACTACAGTGAATGTACC--TTTGACCATCA-----TATCTGTTTAGACCTTATATGCACTCGAATGAACCTTTC-CTACCAGTTGTATTTTAATCTAGACTCACTCTGCTTGGCATAGTAACTGGCGTTCCTGTCTTCTGTTTTGAAGGATTACCGGCACCTTCCCAAAGCAGACATATTTGCCTTGGGATTAACAATCGCAGTGGCTGCAGGAGCAGAGTCATTACCCACCAATGGTACTGCATGGCACCATATCCGCAAGGGTAACTTTCCAGATGTTCCTCAGGagctctcagaaagcttttccaGTCTGCTCAAGGTGATCTCTCTTACGAGATGAACAGAAGAt-gcaatatc
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110479078 878 + 127223203 AAAACTGTATATTTATCATT-------ATAGTACCTCTCTTCTCATTCAGAATGGAGACCAAAGATAGGAGAGAAACTCTTCCAAAAAA----GTGAGGAAAGCTGGCTCAATTAAGGATGAATCAATATTCAGACTTTTCTTTCTAAATG---CCCTTTACTGTTTCCAGATATTTCTTAGACTTCCTAACCTCATGGATTGCCTGCTAAGAAGGAAGCCTTTTCCTCAAGCCCATATTGGTCCAGTCCATCTTTATCATGCCATTATCGTTCTGATAGCACCACCAGTTTCGGTTATTGAAATGACGTTTAGTCATTGCCCATCTTCTCCAATATCTGTTGAGTCAGGCCTAGGGAGGATATAACTTCTTCCTGGGTGATAATCAGGTGAAAATGAGTATTTCCTTCCTGTGATCAGCCAAGT-TATGTAGCAAGCCTTTCTGAGCCTGAC--AG---CAAAATGGCAGGAAGTTTCTGCCTTGGACTCCGCAGGGCACAGCAGTGATAATCAGGTAGATTTATG-------TTCTCT--CTTCTC---TAGAACT----CACTGACTACAGTGAATGTACC--TTTGACCATCA-----TATCTGTTTAGACCTTATATGCACTCGAATGAACCTTTC-CTACCAGTTGTATTTTAATCTAGACTCACTCTGCTTGGCATAGTAACTGGCCTTCCTGTTTTCTGTTTTGAAGGATTACCGGCACCTTCCCAAAGCAGACATATTTGCCTTGGGATTAACAATCGCAGTGGCTGCAGGAGCAGAGTCATTACCCACCAATGGTACTGCATGGCACCATATCCGCAAGGGTAACTTTCCAGATGTTCCTCAGGAGCTCTCAGAAAGCTTTTCCAGTCTGCTCAAGGTGA--TCTTTTACGAGATGAACAGAAGAT-GCAATATC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23822323 862 - 128169293 AAAACTATATA------ATT-------ATAGTATCTCTCTTCCCATTTAGAATGGAGGCCAAAGATAGGAGAGAAACTCTTTCAAAAAA----GTGAGGAAAACTGGCTCAATCAAGGATGAACCAATATTCAGACTATTCTTTCTAAATG---CCTTTTACTGTTTCCCAGTATTTCTTAGGCTT-CTAACCTCATGGATTGCCTCCTAAGAAGGAAGCCTATT--TCAAGCCCATATTGGTCCAGTCCATCTTTATCATGCCATTATTGTTCTGATGGCACCACCAGTTTCGGTTATTGAAATGACGTTTAGTCATTGCCCATCTTCTCCAATGTCTGTTAAGTCAGGTCTAGGAAGGATATAACTTCTTCCTGGGTGATAATCAGGTAAAAATGAGTATTTCCTTCCTGTGATCAGCCAAGT-TATGCAGCAAGCCTTTCTGAGCCTGACAGAG---CAAAATGGCACTAAATTTCTGCCTTGGACTCCTCAGGGCACAGCAGTGTTAATCAGGTAGACTTATG-------TTCTCC--CTTCTC---TAGAAAT----C----ACTACAGT-AATGTACC--TTTGACCATCG-----TGTCTGTTTAGACCTTATATGCACTCTAGT----CTTTC-CTACCAGTTGTATTTTAATCTAGACTCAC--TGCTTGACATAGTAACTGGCCTTCCTGTTGTTTGTTTTGAAGGATTACCGGCACCTTCCCAAAGCAGACATATTTGCCTTGGGATTAACAATTGCACTGGCTGCAGGGGCAGAGTCATTACCCACCAATGGTGCTGCATGGCACCATATCCGCAAGGGTAACTTTCCAGACGTCCCTCAGGAGCTCTCAGAAGACTTTTCCAGTCTGCTCAAGGTGATATTTCTTACGAGATGAATAGAAAAT-GCAATATC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40462478 856 + 149736546 AAGAGTATGCATGTGTAACTCAA----ATTGAAGTCTCATTTACATTCAGA-------CCAAACACAGTAATGAAATTC--CCAAAATG----CACAGGAATGTTGTCTTCCTCAACAATGAATCAATATTTACATAGTTCTTTCTAAATA---TCCCTTACTGTTT-CTAGTATTTCTTAGAATTCTTAGCCTTGTGGGTTGCATAGTAGGAAGGAAACCATCTCTTCATGGTCATCTTTGT---------CTTTAGCATG---TTATCTTCCTGATAGC-CCACCAGCTCTTATCACTAAAATGACTGTTAGTGTCTTCCCATTTTCTAGGTTTTCTGTTAAGTCTGACCTAGCTTGACTATAACTTCTTTCTGGGTAATACTTAGGGAAAAA--AGTGTT---TTCTTGTGATCAGCTAATTATATGT-TCATGCCTCCTAGAATCTGAC--AGAAAAAAAATGATGCAGAGATTCTGCCATGGTCT-CTTGGGGCACAGAAATATTGTTAAGGTTTGTTTGTT-------TCCTTTAGCTTCTTAGGCATAACC----CAGCAACTACAGTAAATATAACTGTTGGTCCAGAGGCAGCTGAAAGTGAAGGGCTCATAAG-ATTCAGAC-------CT-CTGCCAATCACATTT-----TAGACTCACTATCTTTGGCAGACTAACTGGTCCTCCTGTCTTCTGTTTTGTAGAATTACCAACACCTCCCCAAAGCAGACATATTTGCCTTAGGATTAACAATCGCAGTGGCTGCAGGAGCAGAGTCTTTACCCATCAATGGTGACATGTGGCATCATATCCGCAAAGGGAACTTTCCAGAGATTTCCCAAGAGCTCTCGGATGACTTTTATGGTCTACTCAAGGTGAAACATCTTCTGAGATGAAATGCAGAT-GAAATATC
i mm10.chr6                C 0 I 610
s canFam3.chr16             52159968 820 -  59632846 AAAAGTATGtatttataatttaaatttatattatCCCTTATCCTATTCAGGATTGAGATCAAAGAT----GATAAACTTTTCCAAAAAATAGCATGAGGAAAGCTGGCTCAATTGTAGATTAATCAATATTTTTACTGTTCTTTATAAAGGTCCTCCTTTACTGTTT-CTAGTATTTCTTAGAATTCCTAAACTCATGGATTCCTAAGCAAAAAGGAAGCTTT-------------TATTACTTCAGCCCATCTTTATCATGCTGTCATCCTTTTGATAGTACGACCAGCTCCAG----TGAAATGACTTTCAGTTATTGCACACCTTCTAGGATGTCTGTGGAGTCAGGGCTAGGAAG-ATTTAATACCATCCGGAAGGATAA----------------------TATCTGTGA----CCAATC-TATGC---------------------T--TG---C---------------TTCTGCCCTACACTCTTCAGGGCACAGTAGTGTGAATCAGGTGGATTTGTGCCGTATCCTCTGT--CTTCTC---TAGAAGTAAACCACTAGCCATGTCAGATGTGAC--CTGGCCCATTG-----TGTCTGTTTAGG-CTCATATGCACTCAAATGAACCTCTCTTTAACAGTTGT-CTTTAGTCCAGACTCACTTCACTTGGCAAACTAACTGGCATTCCTGTCTTCTGTTTTGAAGGATTATCAGCACCTTCCCAAAGCAGACATATTTGCCTTGGGATTAACAATTGCAGTAGCTGCAGGAGCAGAATCTTTACCCGCAAATGGTGCCAAATGGCATCATATCCGTGAGGGGAACCTTCCAGACATTCCTCAGAAGCTCTCAGAAGAATTTCACAATCTACTCAAGGTGGTATCTCTTAGGAGATGAAGAGAAGATAGAAATGTC
i canFam3.chr16            I 496 C 0

a score=1789.000000
s hg38.chr7_GL383534v2_alt     97834 2 +    119183 TA
s panTro4.chr7             143197711 2 + 161824586 TA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139020192 2 + 157549271 TA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93140963 1 + 110113093 T-
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181034911 2 + 198365852 tt
i rheMac3.chr3             C 0 I 313
s macFas5.chr3             174783006 2 + 192294377 TA
i macFas5.chr3             C 0 I 6
s papAnu2.chr3             163451501 2 + 180432695 ta
i papAnu2.chr3             C 0 I 4
s chlSab2.chr21            110479956 2 + 127223203 TA
i chlSab2.chr21            C 0 I 5
s calJac3.chr8              23823185 2 - 128169293 TA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52160788 2 -  59632846 TA
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40463334 610 + 149736546 I

a score=364741.000000
s hg38.chr7_GL383534v2_alt     97836 104 +    119183 TTTTTTT-----AGTGCGATGGCAACTAGTTGGGCAAAGAAAAATGGAGATGCTAGTAGTGTCACTAACAGAAAAAGGAACGTGACTAGAAGTCCAGAAAAAATAAGGG
s panTro4.chr7             143197713 104 + 161824586 TTTTTTT-----AGTGCGATGGCAAGTAGTTGGGCAAAGAAAAATGGAGATGCTAGTAGTGTCACTAACAGAAAAAGGAACGTGACTAGAAGTCCAGAAAAAATAAGGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139020194 104 + 157549271 TTTTTTT-----AATGCGATGGCAAGTAGTTGGGCAAAGAAAAATAGAGATGCTGGTAGTGTCACTAACAGAAAAAGGAACGTGACTAGAAGTCCAGAAAAAATAAGGG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93140964 104 + 110113093 TTTTTTT-----AATGCGATGGCAAGTAGTTGGGCAAAGAAAAATGGAGATGCTGGTAGTGTCACTAACAGAAAAAGGAACGTGACTAGAAGTCCAGAAAAAATAAGGG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181035226 104 + 198365852 TTTTTTT-----AATGCAATGGCAAGTAGTTGGGCAAAGAAAAATGGAGATGCTGGTAGTGTCACTAACAGAAAAAGGAATCTGACTAGAAGTCCAGAAAAAATAAGGG
i rheMac3.chr3             I 313 C 0
s macFas5.chr3             174783014 104 + 192294377 TTTTTTT-----AATGCAATGGCAAGTAGTTGGGCAAAGAAAAATGGAGATGCTGGTAGTGTCACTAACAGAAAAAGGAATCTGACTAGAAGTCCAGAAAAAATAAGGG
i macFas5.chr3             I 6 C 0
s papAnu2.chr3             163451507 104 + 180432695 ttttttt-----aatgcgaTGGCAAGTAGTTGGGCAAAGAAAAATGGAGATGCTGGTAGTGTCACTAACAGAAAAAGGAATGTGACTAGAAGTCCCGAAAAAATAAGGG
i papAnu2.chr3             I 4 C 0
s chlSab2.chr21            110479963 104 + 127223203 TTTTTTT-----AATGTGATGGCAAGTAGTTGGGCAAAGAAAAATGGAGATGCTGGTAGTGTCACTAACAGAAAAAGGAATGTGACTACAAGTCCAGAAAAAATAAGGG
i chlSab2.chr21            I 5 C 0
s calJac3.chr8              23823187 103 - 128169293 -TTTTTT-----AATGCGATGGCAAGTAGTTGGGGAAAGAAAAATGGAGATACTGGTAGTGTCACTAACAGAAAAAGGAATGTGACTGGAAGTCAAGATAAGATAAGGG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52160790 104 -  59632846 -TTTTTTAAAAAAACATAATTGCAAGTAGGTAGGGAAAGGGAAAAGAAGATGTTGGTAGTGCCACTGACAGAGAAAGGGAT----CCTGATGCCCAGAAAAGACACAGG
i canFam3.chr16            C 0 I 3
e mm10.chr6                 40463334 610 + 149736546 I

a score=572775.000000
s hg38.chr7_GL383534v2_alt     97940 321 +    119183 GCGGGTccaggcatggtggctcacacctgtaatctcagcactttgggaggccgaggagggtggaccacaaggtcagaagatgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcatggtggcaggcacctgtagtcccagctacttgggtggctgagacaggagaatgtcttgaacccaggagacagagcttgcagtgagccaagaccgtgcca-------------------------------------------------------------------ctgcactccagcctgggcgacagagcgagactccgtctcaa-------aaaaaaaaaaaaaaaaa-------GCAGGCAGCGGAGGGGGC
s panTro4.chr7             143197817 328 + 161824586 ATGGGTccaggcatggtggctcacacctgtaatctcagcactttgggaggccgaggagggtggaccacaaggtcagaagatgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagcagggcatggtggcaggcacctgtagtcccagctacttgggtggctgaggcaggagaatgtcttgaacccaggagacagagcttgcagtgagccaagatcgcacca-------------------------------------------------------------------ctgcactccagtctgggcgacagagtgagactccatctcaa-------aaaaaaaaaaaaaaaaaaaaaaaaGCAGGCAGCGGAGGGGGC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139020298 320 + 157549271 GCGGggccaggcgcggtggctcacacctgtaatctcagcaatctgggaggctgaggagggtggaccacaaggtcataagatgagaccatcctggctaacacggtgaaaccctgtctctactaaaaatacaaaaaattagctgggaatggtggcaggcgcctgtagtctcagctactcgggtggctgaggcagaagaatgtcttgaacccaggagacagtgcttgcagtgagccgagactgggcca-------------------------------------------------------------------ctgcactccagcctgggcgacagagcaagactccgtctcaa-------aaacaaaacaaaaaaaa--------aaGGCGGCAGAGGGGAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93141068 326 + 110113093 GTGGggccaggcgcggtggctcaagtctgtaatctcagcaatttgggaggccgaggagggtggaccacaaggtcataagatgagaccatcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaattagccgggcatggtggcaggcgcctgtagtcccagctacttgggtggctgaggcagaagaatgtcttgaacccgggagacagagcttgcagtgagctgagatcatgcca-------------------------------------------------------------------ctgcactccagcctgggtgacagagcaagactccatctcaa-------aaaaaaaaaaaaaaaaa--aaaaaGCAGGCGGCGGAGGGGGT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181035330 315 + 198365852 GCGGggccgggcgcagtggctcatgcctgtaatctcaggactttggggggccaaggcaggtggatcacgagggcagaaggtgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcatggtggcaggtgcctgtagtcccagctacttgggtggctgaggcaggagaatgacttgaacc-------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-----------------------------------------nnnnnnnnnaaaaaaaaaaaaaaa------aTTGGGGGGTGGTGAG---
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174783118 317 + 192294377 GCGGggccaggcacagtggctcatgcctgtaatctcagcactttgggaggctgaggcaggtagatcacgaggtcagaaagtgagaccatcctggctaacacggtgaaaccccatctctactaaaaatataaaaaattagctgggcgtggtggcaggtgcctgtagtcccagctacttgggtggctgaggcaggagaatgacttgaacctg-------gagcttgcagtgagacaagatcgtgcca-------------------------------------------------------------------ctgcattccagcctgggcgacagagcgagatg--atctcagaaaaaaaaaaaaaaaaaaaaaaaa------aaTGGGGGGTGGTGAG---
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163451611 310 + 180432695 ccggggccgggtgcagtggctcatgccggtaatctcagcactttgggaggccgaggcaggtggatcacgaggtcagaaggtgagaccatcctggctaacacagtgaaaccccatctctactaaaaacacaaaaaattagctgggcgtggtggccggtgcctgtagtcccagctactcgggtggctgaggcagcagaatgactTAAacctg-------gagcttgcagtgagacaagatcatgcca-------------------------------------------------------------------ctgcattccagcctgggcgacagagcaagact--gtctcag-------aaaaaaaaaaaaaaaaa------atcgggggGTGGTGAG---
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110480067 311 + 127223203 GCAGggccgggcgcagtggctcatgccagtaatctcagcactttgggaggccgaggcaggtggatcacgaggtcagaaggtgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaattagctggacatagtggcaggtgcctgtagtcctggctactcgggtggctgaggcaggagaatgacttgaacctg-------gagcttgtagtgagacaagatcgtgcca-------------------------------------------------------------------ctgcattccagcctgggcgacagagcaagact--gtctcag------gaaaaaaaaaaaaaaaaa------aTCGGGGGGTGGTGAG---
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40463334 610 + 149736546 I
e canFam3.chr16             52160894   3 -  59632846 I
e calJac3.chr8              23823290   0 - 128169293 C

a score=4585.000000
s hg38.chr7_GL383534v2_alt     98261 3 +    119183 GTG
s panTro4.chr7             143198145 3 + 161824586 GTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139020618 3 + 157549271 GTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93141394 3 + 110113093 GTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181035645 3 + 198365852 ACG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174783435 3 + 192294377 ACG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163451921 3 + 180432695 ACA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110480378 3 + 127223203 ATG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23823290 3 - 128169293 GTG
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40463334 610 + 149736546 I
e canFam3.chr16             52160894 3 -  59632846 I

a score=1850045.000000
s hg38.chr7_GL383534v2_alt     98264 604 +    119183 GATCGAGAATTTCTTAAGGAAACTCGGAGGATATTGTAAAATCTTTTCATGCTTagtttaaaaa-tcctgttacaaacat-tttttcatttgtcccttctaacaacccta-taaggtagacaggtggcatcttatcctgcagttgaggaaaccatggctcagagcagctccttgacacctgtagtcacaa---tgaatgactggctaac--tccaaaatcaaatctggtcctttagctcctacttcagggttttaactattgTTAGTGATAACAGTGATAGTACTAAAAGAATGAATTTCT-ATTATATGTAAGAAGGTATAAGACTACTTTATTGATA----ATTGATAATACCAATTA---TTTGAGCTATTAGAAAAAAGG----CATAATGTCAATTCAAAAATCTATGTTTTACTTGTTCTTAATGACATCTGAGTA-GTGTGGGGACAAGAAAAGGAAGATACTATGTTGAAATAGAAACAAAAAGCTTATACTGTCAAGAAGCTTA--ATCATGTCAAGA----AAAGTGTATATATG-A-CTTTAAATCATGTCTTAAGGAACAGGATTGGCTAGGATTCCCAAAACAGCCTTAGAAATATCTACTTCCTTGGAGATTAGATTTt-
s panTro4.chr7             143198148 604 + 161824586 GATCGAGAATTTCTTAAGGAAACTCGGAGGATATTGTAAAATCTTTTCATGCTTagtttaaaaa-tcctgttacaaacat-tttttcatttgtcccttctaacaacgcta-caaggtagacaggtggcatcttatcctgcagttgaggaaaccatggctcagagcagctccttgacacctgtagtcacaa---tgaatgactggctaac--tccaaaatcaaatctggtcctttagctcctacttcagggttttaactattgTTAGTGATAACAGTGATAGTACTAAAAGAATGAATTTCT-ATTATATGTAAGAAGGTATAAGACTACTTTATTGATA----ATTGATAATACCAATTA---TTTGAGCTATTAGAAAAAAGG----CATAATGTCAATTCAAAAATCTATGTTTTACTTGCTCTTAATGACATCTGAGTA-GTGTGGGGACAAGAAAAGGAAGATACTATGTTGAAATAGAAACAAAAAGCTTATACTGTCAAGAAGCTTA--ATCATGTCAAGA----AAAGTGTATATATG-A-CTTTAAATCATGTCTTAAGGAACAGGATTGGTTAGGATTCCCAAAACAGCCTTAGAAATATCTATTTCCTTGGAGATTAGAttat-
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139020621 593 + 157549271 GATCGAGAATTTCTTAAGGAAACTCGGAAGATATTGTAAAATCTTTTCATGCTTagtttaaaaa-tcctgttacaaaca--tttttcatttgccctttctaacaatgcta-taaggtagacaggtggcatcttatcctgcaattgaggaaaccatggctcagagcagctccttgacacctgtagtcacaa---tgaatgactggctaac--tccaaaatcaaatctggtcctttagctcctacttcagggttttaactattgTTAGTGATAACAGTGATAGTACTAAAAGAATGAATTTCT-ATTATATGTAAGAAGGTATAAGACTACTTTATTGATA----ATTGATAATACCAATTA---TTTGAGCTATTAGAAAAAAG--------AATGTCAATTCAAAAATCTATGTTTTA------CTTAATGACATCTGAGTA-GTGTGGGGACAAGAAAAGAAAGATACTATGTTGCAATAGACACAAAAAGCTTATACTGTCAAGAAGCTTA--ATCATGTCAAGA----AAAATGTATATATG-A-TTTTAAATCATGTCTTAAGGAACAGGATTGGTTAGGATTCCCAAAACAGCCTTAGAAATATCTATTTCCTTGGAGATTAGAtttt-
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93141397 599 + 110113093 GATCTAAAATTTCTTAAGGAAACTCGGAGGATATTGTAAAATCTTTTCATCCTTagtttaaaaa-tcctgttacaaacat-tttttcatttgccctttctaacaatgcta-taaggtagacaggtggcatcttatcctgcaattgaggaaaccatggctcagggcagctccttgacacctgtagtcacaa---tgaatgactggctaac--tccaaaatcaaatctggtcctttagctcctacttcagggttttaactattgTTAGTGATAACAGTGATAGTACTAAAAGAATGAATTTCT-GT--TATGTAAGAAGGTATAAGACTACTTTATTGATA----ATTGATAATACCAATTA---TTTGAGCTAGTAGAAAAAAGG----CATAATGTCAATTCAAAAATCTATGTTTTACTTGTACTTAATGACATCTGAGTA-GTGTTGGGACAAGAA----AAGATACTATGTTGAAATAGACACAAAAAGCTTATACTGTCAAGAAGCTTA--ATCATGTCAAGA----AAAATGTATATATGAA-CTTCAAATCATGTCTTAAGGAACAGGATTGGTTAGGATTCCCAAAACAGCCTTAGAAATATCTACTTCCTTGGAGATTAGATAtt-
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181035648 597 + 198365852 GATGGAGAATTTCTTAAGGAAACTGAGAGGATATTGTAAAATC-TTTCATGCTTagtttaaaag-tcctgttacaaacagttttttcatttgccctttctaacaacgctg-taaggtaggcaggtggcatgttatcctgcagttgaggaaaccatggctcagagCAGCTCCTTGACACCTGTAGTGACAA---TGAATTACGGGCTAAC--TCCACAA-CAAATCCGGTCCTTTAGCTCCTACTTCAGGGTTTTAACTTTTGTTAGTGATAACAGTGATAGTACTAAAAGAATGAATTTCT-ATTATATGTAAGAAGGTATAAGACTACTTTATTGCTA----ATTGATAATACCAATTA---TTTGAGCTATTAGAAAAAAGG----CATGATGTCAATTCAAAAATC--TGTTTTACTTGTACTTAATGACATCTGAGTA-GTGTGGGGACAAGAAAAGGAAGATACTATGTTGAAATAGACACAAAAAGCTTATATTATC---AAGCTTA--ATCATGTCAAGA----AAAATGTATATATG-A-CTTTAAATCATGTCTTAAGGAACAGGATTGGTTAGGATTCCCAAAACAGCCTTAGAAATATCTATTTCCTTGGAGATTAGATTT--
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174783438 581 + 192294377 GATGGAGAAT---TTAAGGAAACTGAGAGGATATTGTAAAATC-TTTCATGCTTagtttaaaag-tcctgttacaaacatttttttcatttgccctttctaacaacgctg-taaggtaggcaggtggcatgttatcctgcagttgaggaaaccatggctcagagCAGCTCCTTGACACCTGTAGTGACAA---TGAATTACGGGCTAAC--TCCACAATCAAATCTGGTCCTTTAGCTCCTACTTCAGGGTTTTAACTTTTGTTAGTGATAACAGTGATAGTACTAAAAGAATGAATTTCT-ATTATATGTAAGAAGGTATAAGACTACTTTATTGCTA----ATTGATAATACCAATTA---TTTGAGCTATTAGAAAAAAGG----CATGATGTCAATTCAAAAATC--TGTTTTACTTGTACTTAATGACATCTGAGTA-GTGTGGGGACAAGAAAAGGAAGATACTATGTTGAAATAGACACAAAAAGCTTATATTATC---AAGCTTA--ATCATGTCAAGA----AAAATGTATATATG-A-CTTTAAATCATGTCTTAAGGAACAGGATTGGTTAGGATTCCCAAA--------------ATCTATTTCCTTGGAGATTAGATTT--
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163451924 600 + 180432695 GATGGAGAATTTCTTAAGGAAACTGAGAGGATATTGTAAAATC-TTTCATGCTTAGTTTAAAAA-TCCTGTTACAAACATGTTTTTCATTTGCCCTTTCTAACAATGCTG-TAAGGTAGGCAGGTGGCATCTTATCCTGCAGCTGAGGAAACCATGGCTCAGAGCAGCTCCTTGACACCTGTAGTGACAG---TGAATTATGGGCTAATAATCCACAATCAAATCTGGTCCTTTAGCTCCTACTTCAGGGTTTTAACTTTTGTTAGCGATAACAGTGATAGTACTAAAAGAATgaatttat-attatatgtaagaAGGTATAAGACTACTTTATTGCTA----CTTGATAATACCAATTA---TTTGAGCTATTAGAAAAAAGG----CATGATGTCAATTCAAAAATC--TGTTTTACTTGTACTTAATGACATCTGAGTA-GTGTGGGGACAAGAAAAGGAAGATACTATATTGAAATAGACACAAAAAGCTTATATTATC---AAGCTTA--ATCACatcaaga----aaaatgtatatatg-a-ctTTAAATCATGTCTTAAGGAACAGGATTGGTTAGGATTCCCAAAACAGCGTTAGAAATATCTATTTCCTTGGAGATTAGATTt--
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110480381 598 + 127223203 GATGGAGAATTTCTTAAGGAAACTGAGAGGATATTGTAAAATC-TTTCATGCTTagtttaaaaa-tcctgttacaaacatgtttttcatttgccctttctaacaatgctg-taaggtaggcaggtggcatcttatcctgcaattgaggaaaccatgactcacagCAGCTCCTTGACACCTGTAGTGACAA---TGAATTACGGGCTAAC--TCCACAATCAAATCTGGTCCTTTAGCTCCTACTTCAGGGTTTTAACTTTTGTTAGCAATAACAGTGATAGTACTAAAATAATGAATTTAT-ATTATATGTAAGAAGGTATAAGACTACTTTATTGCTA----ATTGATAATACCAATTA---TTTGAGCTATTAGAAAAAAGG----CATGATGTCAATTCAAAAATC--TGTTTTACTTGTACTTAATGACATCTGAGTA-GTGTGGGGACAAGAAAAGGAAGATACTATGTTGAAATCGACACAAAAAGCTTATATTATC---AAGCTTA--ATCATGTCAAGA----AAAACATATATATG-A-CTTTAAATCATGTCTTAAGGAACAGGATTGGTTAGGATTCCCAAAACAGCCTTAGAAATACCTATTTCCTTGGAGATTAGATTT--
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23823293 594 - 128169293 GGTAGAGAGTCTCTTAAGGAAACTCGGAGAAAATTGTGAAATC-TTTCATGCTTagtttaaaaagtcctgttacaaacat-tttttcatttgccctttctaacaaccctg-taagataggcaggtggcatcttattctgcagttgaggaag-catggctcagagcagctccttgatacctgaagtcacag---ttaatgactggttagc--tccaaaatcaaatctggtcttcttgTTGCTACTTCAGGATTTTAACTATTGTTAGTGGTAACAGTGATATTACTAAAGGAATGAATTTCT-ACTGCATGTAAGAAGGTATAAGACTA----------------TCGATAATACTAATTA---TTTGAGCTATTAGAAAAAAGGTACATACAATGTCAATTCAAAAGTCTATCTTTTACTTGTACTTAATGACATTTGAGTA-GTGTAGGGGCAAGAAAGGGAAGATGCTATGTTGAAACAGACACAAAAAGCTTATACTGCCAAGAAGCTTA--ATCATACCAAGA----AAAGTGTATATATG-A-CTTTATATCATGTCTTAGGGAACAGGATTGGTTAGGATTCCTAAAACTGCCTTAGAAATATCTATTTCCCTGGAGATTAGAttt--
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52160897 575 -  59632846 GATTGAAAGTTTCTCAAAGAAACTT--AGGATATTATAACACCTGTTTGTTC-TAGTTTAAAA--TCCTGTTA-----ATTTTTTTTCTCTGCCATTCCCAACAACCCTGTTAAGATGGGTAG--------------------TCAGGAAACCTAGGCTTAGAGCATTTCCTGG--ACTTGTATTCTCACCTTTTGATGATTGCTTAAC--TTTAAAAGCAAACCTGGTCTATTTGCT----TTTTA----TTTAACTATTGTCATTGGTAATGGCGATATTATGAAAAAATCTGATTTCTGAGTGTATAGAAGAAAGTAAAAG-CCACTTTATTGATGAATTACTGGCAATACCACCCAACGTCTGGACTATTGGAAAAAGG-----CATAATG-----TCAGGAACCTATGTGTTACTGGTACTCAGTAGCATCTGAGCATGTGT-GGGACAAGGAAAGGAGGCTCTTATGTTGAAACAGAGGTACAAGGA-AACAACGTTGAGAAGCTTAAGATCATACTAAGAAGACAAAATGTATACATA-AGACTTAAGTCATGATTAAAGGAACAGGATTAGTTACGATCCCTACAATAGCCTTAGAAGCATCTACT--CTTGGGGATTAAACTT-G
i canFam3.chr16            I 3 C 0
e mm10.chr6                 40463334 610 + 149736546 I

a score=407409.000000
s hg38.chr7_GL383534v2_alt     98868 166 +    119183 ttttatttttatttttattt-tttattttttgggacagggtctcattctgttgcctagactggagtgcagtggcacaatcatagcttactgcagccttgaactcctgggctcgagcaatcctcctgcctcagcttcctgagtagctggactgcaggtgtgGGAGATT
s panTro4.chr7             143198752 166 + 161824586 ttttatttttatttttattt-tttattttttgggacaggttctcattctgttgcctagactggagtgcagtggcacaatcatagcttactgcagccttgaactcctgggctcgagcaatcctcctgcctcagcttcctgagtagctggactgcaggtgtgGGAGATT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139021214 150 + 157549271 t----------------ttt-tttggggggggggacagggtctcattctgttgcctagactggagtgcagtggcacaatcatagcttactgcagccttgaactcctgagctcgagcaatcctcctgcctcagcttcctgagtagctggactacaggtgtgGGAGATT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93141996 145 + 110113093 t----------------ttt-tt-----ggggggacagggtcttattctgttgcctagactggagtgcagtggcacaatcatagcttactgcagccttgaactcctgggctggagcaatcctcttgcctcagcttcctgagtagctggactacaggtgTCGGAGATT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181036245 147 + 198365852 -----------------TTT-TGGGTGGGAGAGgacagggtctcactctgttacctagactggagtgcagtggcacaatcatagcttactgtagccttgaactcctgggctcgagcaatcctcctgcctcagcttcctgagtagccagactacaggtgtgGAAGA--
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174784019 147 + 192294377 -----------------TTT-TGGGTGGGAGAGgacagggtctcactctgttaccgagactggagtgcagtggcacaatcatagcttactgcagccttgaactcctgggctcgagcaatcctcctgcctcagcttcctgagtagccagactacaggtgtgGGAGA--
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163452524 148 + 180432695 -----------------tttgggggtgggagaggacagggtctcactctgttacctagactggagtgcagtggcacaatcatagcttactgcagccttgaactcctggactcgagcaatcctcctgcctcagcttcctgagtagccggaCTACAGGTGTGGGAGA--
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110480979 146 + 127223203 -----------------TTT--GGGTGGGAGAGgacagggtctcactctgttacctagactggagtgcagtggcacaatcatagcttactgcagccttgaactcctgggctcgagcaatcctcctgcctcagcttcctgagtagctggactacaggtgtgGGAGA--
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23823887 147 - 128169293 -----------------ttt-tt--ttttttgagacagggtctcactctgtcacccagactagagtacagtggcacaatcatagcttactgcagccttgaactcctgggctcaaacaatcctcctgcttcagcttcctgagtagctggactacaggtgtgGGAAATT
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40463334 610 + 149736546 I
e canFam3.chr16             52161472   0 -  59632846 C

a score=2070408.000000
s hg38.chr7_GL383534v2_alt     99034 653 +    119183 AGTTTCACAGTTTACCTGCAAACTTCAAATGTATTTACAAATCTGTCCTTCTTCCTGACTTCTTTTGCTTTCCTGAAAG---GAGGCAAACTCTTCCTCCT------TCC-TTTTGTTCAGTCTAATCACCTATTTCCATATGTAAACCACTTTTGCATTTAGTTGATAT---TTCAGTACCTAAATGCTggccc--tgtactagata-agacatatattaattttgttaaattctaaaaatagttcaagaaagtgaatataattatcccaaatttcaggtaagggaaatggagcttcagca-----------------aagttTATACAACAAATGGTGGAGTTGGCTCTGAAT-TTGG--TCTGAATT--TGGTTCAGTGTTTTCT---TCATTATATGACAGTTTCAGTTGCTGTATATAATTAGG-TATTTTCTACTATATTCAAATCATGATAGGTT----ACATCGTCTACCTTAAAATAAATGC-TTCAGGAATACTGTCATGTTGGGTTA---TTAATACTAAGTGAAAaagcaacatgatgtggtagaaagtaaactggagtaagagttgggcaaactgggttttggtcttgtccattcca-------------------------------gtaatttggataa-----tttttatcg-agagtcttag-ttttttctgctttaaaactaaggcaataGACTAGTTAGCCAGCC---AGCTCCAAAATATGATT
s panTro4.chr7             143198918 653 + 161824586 AGTTTCACAGTTTACTTGCAAACTTCAAATGTATTTACAAATCTGTCCTTCTTCCTGACTTCTTTTGCTTTCCTGAAAG---GAGGCAAACTCTTCCTCCT------TCC-TTTTGTTCAGTCTAATCACCTATTTCCATATGTAAACCACTTTTGCATTTAGTTGCTAT---TTCAGTACCTAAATGCTggccc--tgtactagata-agacatatattaattttgttaaattctaaaaatagttcaagaaagtgaatataattatcccaaatttcaggtaagggaaatggagcttcagca-----------------aagttTATACAACAAATGGTGGAGTTGGCTCTGAAT-TTGG--TCTGAATT--TGGTTCAGTGTTTTCT---TCATTATATGACAGTTTCAGTTGCTGTATATAATTAGG-TATTTTCTACTATATTCAAATCATGATAGGTT----ACATCGTCTACCTTAAAATAAATGC-TTCAGGAATACTGTCATGTTGGGTTG---TTAATACTAAGTGAAAaagcaacatgatgtggtagaaagtaaactggagtaagagttgggcaaactgggttttggtcttgtccattcca-------------------------------GTAATTTGGATAA-----TTTTTATCG-AGAGTCTTAG-TTTTTTCTGCTTTAAAACTAAGGCAATAGACTAGTTAGCCAGCC---AGCTCCAAAATATGATT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139021364 651 + 157549271 AGTTTCACAGTTTACCTGCAAACTTCAAATGTATTTACAAATCTGTCCTTCTTCCTGACTTCTTTTGCTTTCCTGAAA----GAGGCAAACTCTTCCTCCT------TCC-TTTTGTTCAGTCTAATCACCTATTTCCATGTGTAAACCACTTTTGCATTTAGTTGATAT---TTCAGTACCTAAATGCTggccc--tgtactagata-atacatatattaa-tttgttaaattctaaaaatagtttaagaaagtgaatataattatcccaaatttcaggtaagagaaatggagcttcagca-----------------aagttTATACAACAAATGGTGGAGTCGGCTCTGAAT-TTGG--TCTGAATT--TGGTTCAGTGTTTTCT---TCATTATATGACAGTGTCAGTTGCTGTATATAATTAGG-TATTTTCTACTATATTCAAATCATGATAGGTT----ACATCATCTACCTTAAAATAAATGC-TTCAGGAATACTGTCATGTTGAGTTA---TTAATACTAAGTGAAAaagcaacatgatgtggtagaaagtaaactggagtaagagttgggcaaactgggttttggtcttggccattcca-------------------------------GTAATTTGGATAA-----TTTTTATCG-AGAGTCTTAG-TTTTTTCTGCTTTAAAACTAAGGCAATAGACTAGTTAGCCAGCC---AGCTCCAAAATATGATT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93142141 651 + 110113093 AGTTTCACAGTTTACCTGCAAACTTCAAATGTATTTACAAATCTGTCCTTCTTCCTGACTTCTTTTGCTTCCCTGAAAG---GAGGCAAACTCTTCCTGCT------TCC-TTTTGTTCAGTCTAATCACCTATTTCCATGTGTAAACCACTTTTGCATTTAGTTGATAT---TTCAGTACCTAAATGCTggccc--tatactagata-atacatataataa-ttcattaaattctaaaaatagttgaagaaagtaaatataattatcccaaatttcaggtaagggaaatggagcttcagca-----------------aagttTATACAACAAATGGTGGAGTTGGCTCTGAAT-TTGG--TCTGAATT--TGGTTCAGTGTTTTCT---TCATTATATGACAGTGTCAGTTGCTGTATATAATTAGG-TATTTTCTACTATATTCAAATCATGGTAGGTT----ACATCTTCTACCTTAAAATAAATGC-TTCAGGAATACTGTCATGTTGGGTTA---TTAATACTAAGTGAAAaagcaacatgatgtggtagaaagtaaactggagtaagagttgggcaaactgggttttggtcttggccattcca-------------------------------gtaatttggataa-----tttttatcg-agggtctcag--tttttctgctttaaaactaaggcaatagactagTTAGCCAGCC---AGCTCCAAAATATGATT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181036392 637 + 198365852 ---TTCACAGTTTACCTGCAAACTTCAAATGTATTTACAAATCTGTC---CTTCCTGACTTCTTTTGCTTTCCTGAAAG---GAGACAAACTTTTCCTCCT------TCCTTTTTGTTCAGTCTAATCACCTAATTCCATGTGTAAACCACTTTTGCATTTAGTTGATAT---TTCATTACGTAAATGCTGGCCC--TGTAGTGGATA-Atacatatattaa-tttgttaaattctaaaaatagtccaagaaggtaaatataattatcccaaatttcaagtaagggaaatggagcttcagca-----------------aaattTATAAAACAAATGGTGGAGTTGGC--------------TCAGAATT--TTGTTCAGTGTTTTCT---TCATTATATGACAGTGTCAGTTGCTGTATATAATTATG-TATTTTCTACTATATTCAAATCATGATAGGTT--AGACATCTTCTACCTTAAAATAAATGC-TTTAGGAATACTGTCATGTTGGGTTA---TTAATATTAAGTGAAAaagcaacatgatgtggtagaaagtaaactggagtaagagttgggcacactgggttttggtcttggctattcca--------------------------------TAATTTGGATAA-----TTTTTATCA-AGGGTCTTAG-TTTTTTCTGCTTTAAAACTAAGGCAATAGACTAGTTAGCCAGCC---AGTTCCAAAATATGATT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174784166 639 + 192294377 ---TTCACAGTTTACCTGCAAACTTCAAATGTATTTACAAATCTGTCCTTCTTCCTGACTTCTTTTGCTTTCCTGAAAG---GAGACAAACTCTTCCTCCT------TCC-TTTTGTTCAGTCTAATCACCTAATTCCATGTGTAAACCACTTTTGCATTTAGTTGATAT---TTCAGTACGTAAATGCTggccc--tgtactggaca-atacatatattaa-tttgttaaattctaaaaatagtccaagaaggtaaatataattatcccaaatttcaggtaagggaaatggagcttcagca-----------------aaattTATAAAACAAATGGTGGAGTTGGC--------------TCAGAATT--TTGTTCAGTGTTTTCT---TCATTATATGACAGTGTCAGTTGCTGTATATAATTAGG-TATTTTCTACTATATTCAAATTATGATAGGTT--AGACATCTTCTACCTTAAAATAAATGC-TTTAGGAATACTGTCATGTTGGGTTA---TTGATATTAAGTGAAAaagcaacatgatgtggtagaaagtaaactggagtaagagttgggcacactgggttttggtcttggctattcca--------------------------------TAATTTGGATAA-----TTTTTATCA-AGGGTCTTAG-TTTTTTCTGCTTTAAAACTAAGGCAATAGACTAGTTAGCCAGCC---AGTTCCAAAATATGATT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163452672 639 + 180432695 ---TTCACAGTTTACCTGCAAACTTCAAATGTATTTACAAATCTGTCCTTCTTCCTGACTTCTTTTGCTTTCCTGAAAG---GAGGCaaactcttcctcct------tcc-ttttgttCAGTCTAATCACCTAATACCATGTGTAAACCACTTTTGCATTTAGTTGATAT---TTCAGTATGTAAATGCTGGCCC--TGTACTGGaca-atacatatattaa-tttgttAAATTCTAAAAATAGTCCAAGAAGGTAAATATAATTATCCCAAATTTCAGGTAAGGGAAATGGAGCTTcagca-----------------aaatttataaaacaaatggtGCAGTCGGC--------------TCAGAATT--TTGTTCAGTGTTTTCT---TCATTATATGACAGTGTCAGTTGCTGTATATAATTAGG-TATTTTCTACTATATTCAAATCATGATAGGTT--AGACATCTTCTAccttaaaataaatgc-tttaggAATACTGTCATGTTGGGTTa---ttaatattaagtgaaaaagcaacACGATGTGGTAGAAAGTAAACTGGAGTAAGAGTTGGGCAAACTAGGTTTTGGTCTTGGCCATTCCA--------------------------------taatttggataa-----tttttatCA-AGGGTCTTAG-ttttttctgctttaaaactAAGGCAATAGACTAGTTAGCCAGCC---AGTTCCAAAATCTGATT
i papAnu2.chr3             C 0 I 313
s chlSab2.chr21            110481125 635 + 127223203 ---TTCACAGTTTACCTGCAAACTTCAAATGTATTTACAAATCTGTCCTTCTTCCTGACTTCTTTTGCTTTCCTGAAAG---GAGGCAAACTCTTCCTCCT------TCC-TTTTGTTCAGTCTAATCACCTAATTCCATGTGTAAACCACTTTTGCATTTAGTTGATAT---TTCAGTACGTAAATGCTggccc--tgtactggaca-atacatatattaa-tttgttaaattctaaaaatagtccaagaaggtaaatataattatcccaaatttcaggtaagggaaatggagcttcagca-----------------aaattTATAAAACAAATGGTGGAGTTGGC--------------TCAGAATT--GTGTTCAGTGTTTTCT---TCACTATATGACAGTGTCAGTTGCTGTATATAATTAGG-TATTTTCTACTATATTCAAATCATGATAGGTT--AGACATCTTCTAACT-----TAAATGC-TTTAGGAATACTGTCATTTTGGGTTA---TTAATATTAAGTGAAAaagcaacatgatgtggtagaaagtaaactggaataagagttgggcaaactgggttttggtcttggccattcca--------------------------------TAATTTGGATAA-----TTTTTATCA-AGGGTCTTAGTTTTTTTCTACTTTAAAACTAAGGCAATAGACTAGTTAGCCAGCC---AGTTCCAAAATATGATT
i chlSab2.chr21            C 0 I 315
s calJac3.chr8              23824034 644 - 128169293 AGTTTCACAGTTTACCTGCAAACTTCAAATGTATTTACAAATCCATCCTTCTTCCTGACTACTTTTGCTTTTCTGAAAG---GAGGCAAACTCTTCC--------------TTTTGTTCAGTCTAATCACCTATTCCCATGTGTAAACCAC-TTTGCATTTACTTGATAT---TTCAGTACCTAAAtgctagccc--tgtgctgggca-gtacatatatgaa-ttcattaaaatctaaaaatagtctaagaaggtaaacataattatcccaaatttcaggtaagggaaatggagcttcagca-----------------aaattgaTAAAACAAATGGTGGAGTTGGCTCTGAAT-CTGGTCCCCAAATGGAGGGTTCAGTGTTTTCT---TCACTATATG--AGTGTCAATTGCTGTATATAATTAGG-TATTTTCTACTATATTCAAATCATGATAGGTTACAGATGTCTTCTACCTTAAAATAAATGC-TTTAGGAATACTGTTATGGTGGGTTA---TTAAAATTAAGTGGAACAgcaacatgatgtggtagaaagtaaacaggagtaagagttgggcaaactgggttttagtcttggccattcca-------------------------------GTAATTTGGATAA-----TTTTTATTG-A--GTCATAG-TTT----TGCTTGAAAACTAAGGCAATAGACTAGTTAGCCAGCC---AGCTCCAAAATATGATT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52161472 733 -  59632846 AGTTTCACAGTTTACCTGAAAACTTCAATTTTAGCTACAGATTTGTCCCTCTTCC---ATGCTGCTGCTTTCCTGAAAAAACAAGGCAAACCCTTGCTCACAGTGGAGTT-TCATGAATAGCATAATTACCCATTTCTATGTGTAAACTGCTCCTAGATTTagttaatacatactgagttcttcagtgctggcccagtgcacttgttatacatatatgctaa-ttcatttaattcttgcagtaatccaa-aaggtgaatattgttatcccagatatcgggaaagagaaagtgagtttcagcatcgtcaagccactttctcaagctagttagtgaatggtggatctggctctgaacattggtcCCCAAATAGAAGGTTCA-TATTATATGAACCATTATATGATATTGCTAATTACTATAAATAGTTAAGCTATTTTCTACTGTATTTATGTCGTTTTAGGTT-AAGACACTCTCTACCTGAAGATGAATGCTTTTAGGAATACTGTCATGGTGGGGTATACTTAGTTTTAGCTgaaaagg-agcatgttgtagttgaaagtaaatggaactaggagttgggtaacttgagttttagtcttggtcaagtcactttttatcttggacctcagtttgaaagcaagtcacttggacaagtcacttttaatctcaggacctctg-tttcttcccatttaaaatgaacacactcgactagctaatcacccactagctctaaaatatgat-
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40463334 610 + 149736546 I

a score=23487.000000
s hg38.chr7_GL383534v2_alt     99687 6 +    119183 AAAAAC
s panTro4.chr7             143199571 6 + 161824586 AAAAAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139022015 6 + 157549271 AAAGAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93142792 6 + 110113093 AAAGAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181037029 6 + 198365852 AAAGAC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174784805 6 + 192294377 AAAGAC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163453624 6 + 180432695 aaagac
i papAnu2.chr3             I 313 C 0
s chlSab2.chr21            110482075 6 + 127223203 aaagac
i chlSab2.chr21            I 315 C 0
s calJac3.chr8              23824678 6 - 128169293 AAAGAC
i calJac3.chr8             C 0 I 298
s mm10.chr6                 40463944 6 + 149736546 AAATCC
i mm10.chr6                I 610 C 0
s canFam3.chr16             52162205 6 -  59632846 AAGGAC
i canFam3.chr16            C 0 C 0

a score=17833.000000
s hg38.chr7_GL383534v2_alt     99693 4 +    119183 AAAT
s panTro4.chr7             143199577 4 + 161824586 AAAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139022021 4 + 157549271 AAAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93142798 4 + 110113093 AAAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181037035 4 + 198365852 AAAT
i rheMac3.chr3             C 0 I 308
s macFas5.chr3             174784811 4 + 192294377 AAAT
i macFas5.chr3             C 0 I 306
s papAnu2.chr3             163453630 4 + 180432695 aaat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110482081 4 + 127223203 aaaT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23824982 4 - 128169293 aaaT
i calJac3.chr8             I 298 C 0
s mm10.chr6                 40463950 4 + 149736546 AAGT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52162211 4 -  59632846 AAGT
i canFam3.chr16            C 0 C 0

a score=1383943.000000
s hg38.chr7_GL383534v2_alt     99697 358 +    119183 CAAAGGTGTGGACAACTGGTGCTACCAGACATGGACAATCCTCCTGCCCCAGGTGGAGCTCAGTTTTCATT----TCTTTCCT-CTGCACAAAG-CAGAAGCAATGTCTTACAAAATCCACCAGGAGAAGCTGGGTTGGAGTTGGCTTGAATGGGAAGATTTTTCCCAATAGTGAAGCTTCTGTTTCTTTCCTCTTGGTCCTA----TATCATCAGAACATGATCCAACCTGATGCCGAACAGAGACCTTCTGCAGCAGCTCTGGCCAGAAATACAGTTCTCCGGCCTTCCCTGGGAAAAACAGAAGAGCTCCAACAGCAGCTGAATTTGGAAAAGTTCAAGACTGCCACACTGGAAAGGTATATTTT
s panTro4.chr7             143199581 358 + 161824586 CAAAGGTGTGGACAACTGGTGCTACCAGACATGGACAATCCTCCTGCCCCAGGTGGAGCTCAGTTTTCATT----TCTTTCCT-CTGCACAAAG-CAGAAGCAATGTCTTACAAAATCCACCAGGAGAAGCTGGGTTGGAGTTGGCTTGAATGGGAAGATTTTTCCCAATAGCGAAGCTTCTGTTTCTTTCCTCTTGGTCCTA----TATCATCAGAACATGATCCAACCTGATGCCGAACAGAGACCTTCTGCAGCAGCTCTGGCCAGAAATACAGTTCTCCGGCCTTCCCTGGGAAAAACAGAAGAGCTCCAACAGCAGCTGAATTTGGAAAAGTTCAAGACTGCCACACTGGAAAGGTATATTTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139022025 358 + 157549271 CAGAGGTGTGGACAACTGGTGCTACCAGACATGGACAATCCTCCTGCCCCAGGTGGAGCTCAGTTTTCATT----TCTTTCCT-CTGCACAAAG-CAGAAGCAATGTCTTACAAAATCCACCAGGAGAAGCTGGGTTGGAGTTGGCTTGAATGGGAAGATTTTTCCCAATAGTGAAGCTTCTGTTTCTTTCCTCTTGGTCCTA----TATCTTCAGAACATGATCCACCCTGATGCTGAACAGAGACCTTCTGCAGCAGCTCTGGCCAGAAATACAGTTCTCCGGCCTTCCCTGGGAAAAACAGAAGAGCTCCAACAGCAGCTGAATTTGGAAAAGTTCAAGACTGCCACACTGGAAAGGTATATTTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93142802 358 + 110113093 CAAAGGTGTGGACAACTGGTGCTACCAGACATGGACAATCCTCCTGCCCAAGATGGAGCTCAGTTTTCATT----TCTTTCCT-CTGCACAAAG-CAGAAGCAATGTCTTATAAAATCCACCAGGAGAAGCTGGGTTGGAGTTGGCTTGAGTGGGAAGATTTTTCCCAATAGTGAAGCTTCTGTTTCTTTCCTCTTGGTCCTA----TATCATCAGAACATGATCCACCCTGATGCTGAACAGAGACCTTCTGCAGCAGCTCTGGCCAGAAATAGAGTTCTTCGGCCTTCCCTGGGAAAAACAGAAGAGCTCCAGCAGCAGCTGAATTTGGAAAAGTTCAAGACTGCCACACTGGAAAGGTATATTTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181037347 359 + 198365852 caaaGATGCGGACAACTGGTGCTACCAGACATGGACGATCCTCCTGCCCAAGGTGGAGCTCAGTTTTCATT----TCTTCCCT-CTGCACAAAGCCAGAAGCAAGGTCTCACAAAATCCACCAGGAGACGCTGGGTTGGGGGTGGCTTCAGCGAGAAGATTTTTCCCAATAGTGAAGCTTCTATTTATTTCCTCTTGGTCCTA----TATCATCAGAACATGATCCACCCTGATGCTGAACAGAGACCTTCTGCAGCAGCTCTGGCCAGAAATAGAGTTCTCCGGCCTTGCCTGGGAAAAACAGAGGAGCTCCAACAGCAGCTGAATTTAGAAAAGTTCAAAACTGCCACACTGGAAAGGTATATTAT
i rheMac3.chr3             I 308 C 0
s macFas5.chr3             174785121 359 + 192294377 caaaGATGCGGACAACTGGTGCTACCAGACATGGACGATCCTCCTGCCCAAGGTGGAGCTCAGTTTTCGTT----TCTTCCCT-CTGCACAAAGCCAGAAGCAAGGTCTTACAAAATCCACCAGGAGACGCTGGGTTGGGGGTGGCTTCAGCGAGAAGATTTTTCCCAATAGTGAAGCTTCTATTTATTTCCTCTTGGTCCTA----TATCATCAGAACATGATCCACCCTGATGCTGAACAGAGACCTTCTGCAGCAGCTCTGGCCAGAAATAGAGTTCTCCGGCCTTGCCTGGGAAAAACAGAGGAGCTCCAACAGCAGCTGAATTTAGAAAAGTTCAAAACTGCCACACTGGAAAGGTATATTAT
i macFas5.chr3             I 306 C 0
s papAnu2.chr3             163453634 358 + 180432695 caaagATGTGGACAACTGGTGCTACCAGACATGGACGATCCTCCTGCCCAAGGTGGAGctcagttttcatt----tcttccct-ctGCACAAAG-CAGAAGCAAGGTCTTACAAAATCCACCAGGAGACGCTGGGTTGGAGGTGGCTTCAGCGAGAAGATTTTTCCCAATAGTGAAGCTTCTATTTATTTCCTCTTGGTCCTA----TATCATCAGAACATGATCCACCCTGATGCTGAACAGAGACCTTCTGCAGCAGCTCTGGCCAGAAATAGAGTTCTCCGGCCTTCCCTGGGAAAAACAGAGGAGCTCCAACAGCAGCTGAATTTAGAAAAGTTCAAAACTGCCACACTGGAAAGGTATATTTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110482085 357 + 127223203 CAAAGGTGTGGACAACTGGTGCTACCAGACATGGACAATCCTCCTGCCCAAGGTGGAGCTCAGTTTTCATT----TCTTCCCG-CTGCACAAAG-CAGAAGCAAAGTCTTACAAAATCCACCAGGAGAAGCTGGGTTGAAGGTGGCTTCAGTGAGAAGATTTTT-CCAGTAGTGAAGCTTCTATTTATTTCCTCTTGGTCCTA----TATAATCAGAACATGATCCACCCTGATGCTGAACAGAGACCTTCTGCAGCAGCTCTGGCCAGAAATAGAGTTCTCCGGCCTTCCCTGGGAAAAACAGAGGAGCTCCAACAGCAGCTGAATTTAGAAAAGTTCAAAACTGCCACACTGGAAAGGTATATTTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23824986 361 - 128169293 CAAAGGTGTGGACAACTGATGCTACCAGACATGGACAATCCTCTTGTCCAAGGTGGGACTCAGCTTTCATTTCTCTCTTTCCT-CTGCACAAAG-TAGAAACAAGATCTCGCAAAAGCCATCAGCAGAAGCTGGGTTGGAGTTGACTTGAGTGGGAAGACTTTTCCCAACAGTGAAACTTCCATTTCTTTCCTTTT-GTCCTA----TATCATCAGAACATGATCCAGCCTGATCCTGAACAGAGACCTTCTGCAGCAGCTCTTGCCAGTAATCGAGTCCTCCGGCCTTCCCTGGGAAAAACAGAAGAGCTCCAACAGCAGCTAAATTTGGAAAAGTTCAAGACAGCCACACTGGAAAGGTATATTTT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40463954 335 + 149736546 CATAGGTACAGACAACCAGTGTTACCAGACATGTTCCA-CTTTCTGTTCAAGGTAGAACAATGT-----------TC----------CACTGAG-GTCAAGCA--GTTTTACAAAACCTACTGGTAGATATTGAGCTGAAGTTGCCTTGACTGGGGAGATACTG-CCAGTATTAAAACT---GTTTTCTTCC--ATGGTCCTAACTCTGTCTTCAGAACATGATCCACCCAGCTCCAAAGGAGAGACCATCTGCAGCAGCTCTGGCCAGAAGTCGAATTCTCTGGCCTTTCTTGGAGAAGACTGATGAACTCCAGAAACAACTGAATTTGGAGAAATCCAAGACAGCCACACTGAAAAGGTACA--GT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52162215 359 -  59632846 CAGAGGTACGGATGACGGATGCCACTGTGTAGGGATGATGGTTCCATCCCCGGTGGAACTAAGTTTTTATT----TATTTCTTCCCCCATAAAGTTAAAAGCAGAGTTTCACAAAACTCACCAGCAGAAGCTGGGTTGGAGTTGGATTGGGTGGGCAGATTTTC-CCAGCAGTAAAGTTTCTATTGCCTTCGTTTTGGTCCGA----CATCAACAGAACATGATCCACCCTGACCCAAGTGAGAGACCTTCTGCAGCAGGTCTGGCCAGAAGTCGAGTTCTCCGGCCCTCCCTCAGGAAAGCGGAAGAGCTCCAGCAGCAACTTAACTTGGAAAAGTCCAAGACAGCCACACTAGAAAGGTAGTTTTT
i canFam3.chr16            C 0 I 2279

a score=1291985.000000
s hg38.chr7_GL383534v2_alt    100055 408 +    119183 TGGATGATGGGGGGTCAAGAAAGAATC--TGAGCACTACTCACAATGGT-ATGACTAGTCTACTGTGTCTTCTCTGTGGATTCAA----------------------------------GTATA-AATATATTCACCATTATAATACATAGGTCCCTGCCCACAAGGAAACTGGCAGCATGCGGCTCTTTGTAGCATCGGGCTGGGAGGCTCTGTGATTAGGTTGCTT--GAGAGAGAAAATTCCAGTTAACGCAAACAAAGGAAGCAAGAGTGAGGAATATAAGGAAATACCAGTAAAGAAAACTTAGGATTCTAAGtgacagcaggtatcttagtaactggttggtgatcacctaatata-----agataaccacagg-------taagatg----ggta-----agacctattttagaaaccca-TAAATTTCAGGGGCAGGCAGGTAGACATACTGTCCTGGTACA
s panTro4.chr7             143199939 406 + 161824586 TGGATGATGGGGGGTCAAGAAAGAATC--TGAGCACTACTCACAATGGT-ATGACTAGTCTACTGTGTCTTCTCTGTGGATTCAA----------------------------------GTATA-AATATATTCACCATTATAATACATAGGTCCCTGCCCA--AGGAAACTGGCAGCATGCGGCTCTTTGTAGCATCGGGCTGGGAGGCTCTGTGATTAGGTTGCTT--GAGAGAGAAAATTCCAGTTAATGCAAACAAAGGAAGCAAGAGTGAGGAATATAAGGAAATACCAGTAAAGAAAACTtaggattctaagtgacagcaggtatcttagtaactggttggtgatcacctaatata-----agataaccacagg-------taagatg----ggta-----agacctattttagaaaccca-TAAATTTCAGGGGCAGGCAGGTAGACATACTGTCCTGGTACA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139022383 409 + 157549271 TGGATGATGGGGGGTCAAGAAAGAATC--TGAGTACTACTCACAATGGT-ATGACTAGTCTACTGTGTCTTCTCTGTGGATTCAA----------------------------------GTATA-AATATATTCACCATTATAATACATAGGTCCCTGCCCACAAGGAAACTGGCAGCATGCGGCTCTTTGTAGCATCAGGCTGGGAGGCTCTGTGATTAGGTTGCTT--GAGAGAGAAAATTCCAGTTAATGCAAACAAAGGAAACAAGAGTGAGGAATATAAGGAAATACCAGTAAAGAAAACTTAGGATTCTAAGTGACAGCGGGTATCCTAGTAACTGGTTGGTGATCACCTAACATA-----AGATAACAACAGG-------TAAGATG----GGTA-----AGACCTATTTTAGAAACCCATTAAATTTCAGGGGCAGGCAGGTAAACATACTGTCCTGGTACA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93143160 405 + 110113093 TGGATGATGGGGGGTCAAGAAAGAATC--TGAGCACTACTCACAATGGTAATAACTAGTCTACTGTGTCTTCTCTGTGGATTCAA----------------------------------GTATA-AATCTATTCACCATTATAATACATAGGTCCCTGCCCACAAGGAAACTGGCCGCATGCAGCTCTTTGTAGCATCAGGCTGGGAGCCTCTGTGATTAGGTTGCTT--GAGAGAGAAAATTCCAGTTAATGCAAACAAAGGAAGCAAGAGTGAGGAATATAAGGAAATACCAGTAAAGAAAACTTACGATTCTAAGTGACAGTGGGTATCTTAGTAACTGGTCGGTGATCACCTAATATA-----AGATAACCACAGG-------TAAGATG----GATA-----AGACCTATTTTAGAAACCCATTAAATTTCAGGGGCAGGCAGGTAGACA-----GTATGGTACA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181037706 406 + 198365852 TGGATGAT-GGGGGTCAAAAAAGAATC--TAAGCACTACTCACAATGGT-ATGACTAGTCTACTGTGTCTTCTCTGTGGATTCAA----------------------------------GTATA-AATATATTCACCATTATAATACATAGGTCCCTGCCCATAAGGACACTGGCAGCATGCGGCTCTTTGTAGCATCGGGCTGGGAGGCTCTGTGATTAGGTTGCTT--GAGAGAGAAATTTCCAGTTAATGAAAACAAGGGAAGCAAGAGGGAGGAATATAAGGAAATACCAGTAAAGAAAAC--AGGATGCTAAGTGACAGCGGGTATCTTAGTAACTGGTTGGTGATCGCCTAATATA-----AGATAACCGCAGG-------TAAGATG----GGTA-----AGACCTATTTTAGAAACCCCTTAAATTTCAGGGGCAGGCAGGTAGACATACTGTCCTGGTACA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174785480 406 + 192294377 TGGATGAT-GGGGGTCAAAAAAGAATC--TAAGCACTACTCACAATGGT-ATGACTAGTCTACTGTGTCTTCTCTGTGGATTCAA----------------------------------GTATA-AATATATTCACCATTATAATACATAGGTCCCTGCCCATAAGGACACTGGCAGCATGCGGCTCTTTGTAGCATCGGGCTGGGAGGCTCTGTGATTAGGTTGCTT--GAGAGAGAAATTTCCAGTTAATGAAAACAAGGGAAGCAAGAGGGAGGAATATAAGGAAATACCAGTAAAGAAAAC--AGGATGCTAAGTGACAGCGGGTATCTTAGTAACTGGTTGGTGATCGCCTAATATA-----AGATAACCGCAGG-------TAAGATG----GGTA-----AGACCTATTTTAGAAACCCCTTAAATTTCAGGGGCAGGCAGGTAGACATACTGTCCTGGTACA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163453992 408 + 180432695 TGGATGAT-GGGGGTCAAAAAAGAATC--TGAGCACTACTCACAATGGT-ATGACTAGTCTACGGTGTCTTCTCTGTGGATTCAA----------------------------------GTATA-AATATATTCACCATTATAATACATAGGTCCCTGCCCATAAGGAAACTGGCACCATGTGGCTCTTTGTAGCATCGGGCTGGGAGGCTCTGTGATTAGGTTGCTT--GAGAGAGAAATTTCCAGTTAATGAAAACAAGGGAAGCAAGAGTGAGGAATGTAAGGAAATACCAGTAAAGAAAACTTAGGATTCTAAGTGACAGCGGGTATCTTAGTAACTGGTTGGTGATCGCCTAATATA-----AGATAACCGCAGG-------TAAGATG----GGTA-----AGACCTATTTTAGAAACCCCTTAAATTTCAGGGGCAGGCAGGTAGACATACTGTCCTAGTACA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110482442 408 + 127223203 TGGATGAT-GGGGGTCAAAAAAGAATC--TGAGCACTACTCACAATGGT-ATGACTAGTCTACTGTGTCTTCTTTGTGGATTCAA----------------------------------GTATA-AATATATTCACCATTATAATACATAGGTCCCTGCCCATAAGGAAACTGGCGGCACGCGGCTCTTTGTAGCATCGGGCTGGGAGGCTCTGTGATTAGGTTGCTT--GAGAGAGAAATTTTCAGTTAATGAAAACAAAGGAAGTAAGAGTGAGGAATATAAGGAAATACCAGTAAAGAAAACTTAGGATTCTAAGTGATAGTGGGTATCTTAGTAACTGGTTGGTGATCGCCTAATATA-----AGATAACCGCAGG-------TAAGATG----GGTA-----AGACCTATTTTAGAAACCCATTAAATTTCAGGGGCGGGCAGGTAGACATACTGCCCTGATACA
i chlSab2.chr21            C 0 I 8
s calJac3.chr8              23825347 438 - 128169293 TGGATGAT-GGAGGTCAAGAAAGAATC--TGAGCACTACTCATAATGGT-ATGACCAGTCTAGTGTGTCTTCTCTATGGATTTAGGGgtgtgtatatgagtgtgtgtgtgtgtgtgtgtgtgtg-tgtgtATTCACCAGTAT-ATACATAGGTCCCTGTCCACAAGTCAACTGGCAGTATGTGGCTCTTCATAGCATGGGGCTGGGAGGCTCTGTGATTAGGCTGCTTGAGAGAGAGAAAATTCCAGTTAATGCAAGCAAAGGAAGCAAGAGTGAGGAATATAAGGAAATACCAGTAAAGAAAACTTAGGATTCTGAGTGGCAGCAGGTATCTAAGTAACTGGTTGGTGATCACCTAATATA-----AA-----CACGGG-------TAAGATG----AGTA-----AGACCTATTTTAGAAACCCATTAAGTGTCAGGGGCAGGCAAGTAGACATACTGTACTGGTACA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40464289 410 + 149736546 TGGCTGTT--GGAGTCAAAAAAGGATCGGTTTGAACCACTCCCAGTGGT-CTGACTGGACTGATGTGTCTT---TATAGAGTCAA----------------------------------GTTTATTGTTTATTCTACATCATCAGACATAGG-CTCTGCCCACAGGAAGCCTGGCAGTGTGC-TTTATTTCTGGCATGAGACTCTGCAGCTCTGAGGTTAGACAGCTT-----TGAAAGAATTCCAGGTAATG----CAAAGGAAGCAAGAGGGAGGTATACAA--CACCAGCAATAAGCAAGTCCTTGGATTCTGAGGGACAGCAGGTATCAAAGTAACT----GGTGACCACCTAAGCTAGTCTTAGCTAAATAGAGATCTGTTTTATGATACCTTGGTAAGTGGAGACCTACTTCAGAAAGCAC-CAAGTTGCAGAGACAGG-AGGCAGGCATCATATCCTGCTAA-
i mm10.chr6                C 0 C 0
e canFam3.chr16             52162574 2279 -  59632846 I

a score=281775.000000
s hg38.chr7_GL383534v2_alt    100463 117 +    119183 CATTTGGAGGAAGGATTAT-TTTTCTGAGCAAAGAAAACGATCTG----TTCCCCTACTCATGTGGGCTTGTATTCATGCATATATTTACTTGTTAATCCATTCCTTCAATAAATGGGAATT
s panTro4.chr7             143200345 117 + 161824586 CATTTGGAGGAAGGATTAT-TTTTCTGAGCAAAGAAAACGATCTG----TTCCCCTACTCATGTGGGCTTGTATTCATGCATATATTTACTTGTTAATCCATTCCTTCAATAAATGGGAATT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139022792 117 + 157549271 CATTTGGAGGAAGGATTAT-TTTTCTGAGCAAAGAAAACAATCTG----TTCCCCTACTCATGTGGGCTTGTATTCATGCATATATTTACTTGTTAATCCATTCCTTCAGCAAATGGGAATT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93143565 114 + 110113093 CATTC---GGAAGGATTAT-TTTTCTGAGCAAAGAAAACAATCTG----TTCCCCTACTCATTTTGGCTTGTATTTATGCATATATTTACCTGTTAATCCATTCCTTCAATAAATGAGAATT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181038112 117 + 198365852 CATTTAGAGGAAGGATTAT-TTTTCTAGGCAAAGAAAACAATCTG----TTCTCCTGCTCATGTAGGCTTGTATTCATGCATATATTTACTTGTTAATCCATTCCTTCAATAAATGGGAATG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174785886 117 + 192294377 CATTTAGAGGAAGGATTAT-TTTTCTAGGCAAAGAAAACAATCTG----TTCTCCTGCTCATGTAGGCTTGTATTCATGCATATATTTACTTGTTAATCCATTCCTTCAATAAATGGGAATG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163454400 117 + 180432695 CATTTAGAGGAAGGATTAT-TTTTCTGAGCAAAGAAAACATTCTG----TTCTCCTGCTCATGTAGGCTTGTATTCATGCATATATTTACTTGTTAATCCATTCCTTCAATAAATGGGAATT
i papAnu2.chr3             C 0 C 0
s calJac3.chr8              23825785 109 - 128169293 CATTTAGAGGAAAGATTAT-TTTTTTGAGCAAAGAAAACAATCTG----CTCTC---CTCATGTAGGCTTGTATTCATGCATAAATTTACTTGTTAA-----TCCTTCAATAAATGAGAATT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40464699 112 + 149736546 CATGTGTAG--AGGATTATATGTTTTCCCTAGAAAAGGCAATCTGATTCATCTCCCTTTGATGTAGGTTTGTATTC--------ATTTGTTTGTTTATTTCTTCATTAGACAAATGGGAAAT
i mm10.chr6                C 0 I 47
e canFam3.chr16             52162574 2279 -  59632846 I
e chlSab2.chr21            110482850   8 + 127223203 I

a score=468538.000000
s hg38.chr7_GL383534v2_alt    100580 224 +    119183 CAAatacttacctggcagggaagataccatgatcacgaaggtggtttttcccagcgtggggctcatcgattgcactccggatgtgctgacccctgtgatattcccaaatgtggaaaactcgactgcataatttgttgtagtgggggactgcattcgcgctttcccctgAAAAACG---------GAAACAAAAAAATAGGAATTTGATGGGGTGGGGTTGGAGATGAGCAGTG
s panTro4.chr7             143200462 224 + 161824586 CAAatacttacctggcagggaagataccatgatcacgaaggtggtttttcccagcgtgaggctcatcgattgcactccggatgtgctgacccctgagatattcccaaatgtggaaaactcgactgcataattagttgtagtgggggactgcgttcacgctttcccctgAAAAACG---------GAAACAAAAAAATAGGAATTTGATGGGTTGGGGTTGGAGATGAGCAGTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139022909 223 + 157549271 CAAatacttacctggcagggaagatatcatgatcacgaaggtggtttttcccagtgtgaggctcatcgattgcactccggatgtgctgacccctgcgatatccccaaatgtggaaaactcgactgcataatttgttgtagtgggggactgtgttcgtgctttcccctgAAAAACG---------AAAACAAAAAAATAGGAA-TTGATGGGGTGGGGTTGGAGATGAGCAGCG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93143679 221 + 110113093 TGAatactcacctggcagggaagataccatgatcacgaaggtggtttttctcagggtgaggctcatcgattgcactccggatgtgctgacccctgcgatgtccccaaatgtggaaaactcgactgcataatttgtggtagtgggggactgcattcatgcttttccctgAAAAACG---------AA---AAAAAAATAGGAATTTGATGGAGTAGGGTTGGAGATGAGCAGTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181038229 226 + 198365852 CGAatacttacctggtagggaggataccatgatcacgaaggcgg-ttttcccagggtgagactcatcgactg-actccggatgtgctgacccctgcgatgtccccaaaggtggaaaacttgactgcataagtggtggtagtgggggactgtggtcatgctttcccctgAAAAATG-----AAAAAAAAAAAAAAAAAAGGAATTCAATGGGGTGGGGTTGGAGATGAGCAGTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174786003 231 + 192294377 CGAatacttacctggtagggaggataccatgatcacgaaggcgg-gtttcccagggtgagactcatcgactg-actccggatgtgctgacccctgcgatgtccccaaaggtggaaaacttgactgcataagtggtggtagtgggggactgtgttcatgctttcccctgaaaaatgaaaaaaaaaaaaaaaaaaaaaaaGGAATTCAATGGGGTGGGGTTGGAGATGAGCAGTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163454517 221 + 180432695 CGAATACTTACCTGGTAGGGAAGATACCATGATCACGAAGGCGG-TTTTCCCAGGGTGAGACTCATAGACTG-ACTCTGGTTGTGCTGACCCCTGCGATGTCCCCAAAGGTGGAAACCTTGACTGCATAAGTGGTGGTAGTGGGGGACTGTGTTCATGCTTTcccctgaaaaatg----------aaaaaaaaaaaaaggaattcaatgGGGTGGGGTTGGAGATGAGCAGTG
i papAnu2.chr3             C 0 C 0
s calJac3.chr8              23825894 225 - 128169293 TGAatatttacctgacaggggagatgccatgatcacgaaggtgg-ttttcccagggtaagggtcatccattgcactccggatgtgctgacccctgcgatttctccaaatgtgggaaactcgactgcataatttgtggtagtgggggactgcgtttgtactttcccctgAAAAACA-------AAAAAGAAAAAAAATGGGAATTCAATGGGGTGGAGTTGGAGAAGAGCAGTA
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40464811  47 + 149736546 I
e canFam3.chr16             52162574 2279 -  59632846 I
e chlSab2.chr21            110482850   8 + 127223203 I

a score=860664.000000
s hg38.chr7_GL383534v2_alt    100804 349 +    119183 TTCTGAAGGCATTTTTGAGTAATTATTACATATACTGTACACTGTTGAAAATACAAAAGAAGAAAATGAAAAATTGTCCTTGCTTAAAATAAGCTTAGAAGTCCAGCTTCTCTTGGATATACAGTCATCCATCTTGGAAAGATTAGCTT-------TGAAGCATCCCTAACCTGATTTCTTAGTATTAATAATAACTTGTAGAGACTCTTGGCCTTTAGTCAGGTAA----ATCTTCCTAATAAGCCTCTTAATATTTTTCTGTTCTAGTTTTGAATTCCATTGTCCCAGCTAATAAAG---AAAGTACAAAGTAC---------------------------------------------------------------TATACTTACATATGT-TATTCACAAGA----ATATAAGTACCTCTTAAGGTG
s panTro4.chr7             143200686 349 + 161824586 TTCTGAAGGCATTTTTGAGTAATTACTACATATACTGTACGCTGTTGAAAATACAAAAGAAGAAAATGAAAAATTGTCCTTGCTTAAAATAAGCTTAGAAGTCCAACTTCTCTTGGATATACAGTCATCCATCTTGGAAAGATTAGCTT-------TGAAGCATCCCTAACCTGATTTCTTAGTATTAATAATAACTTGTAGAGACTCTTGGCCTTTAGTCAGGTAA----ATCTTCCTAATAAGCCACTTAATATTTTTCTGTTCTAGTTTTGAATTCCATTGTCCCAGCTAATAAAG---AAAGTACAAAGTAC---------------------------------------------------------------TATACTTACATATGT-TATTCACAAGA----ATATAAGTACCTCTTAAGGTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139023132 349 + 157549271 TTCTGAAGGCATTTTTGAGTAATTATTACATATACTGTACACTGTTGAAAATACAAAAGAAGAAAATGAAAAATCGTCCTTGCTTAAAATAAGCTTAGAAGTCCAACTTCTCTTGGATATACAGTCATCCATCTTGGAAAGATTAGCTT-------TGAAGCATTCCTAACCTGATTTCTTAGTATTAATAATAACTTGTAGAGACTGTTGGCCTTTAGTCAGGTAA----ATCTTCCTAATAAGCCACTTAATATTTTTCTGTTCTAGTTTTGAATTCCATTGTCCCAGCTAATAAAG---AAAGTACAAAGTAC---------------------------------------------------------------TATACTTACATATGT-TATTCACAAGA----ATATAAGTACCTCTTAAGGTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93143900 352 + 110113093 TTCTGAAGGCATTTTTGAGTAATTATTACATATACTGTACACTGTTGAAAATACAAAAGAAGAAAATGAAAAACTGTCCTTGCTTAAAATAAGCTTAGAAGTCCAGCTTCTCTTGGCTATACAGTCATCCATCTTGGCAAGATTAGCTT-------TGAAGCATCCCTAACCTGATTTCTTAGTATTAATAATAACTTGTAGAGACTCTTGGCCTTTAGTCAGGTAA----ATCTTCCTAATAAGCCACTTAATATTTTTCTGTTCTAGTTTTGAATTCCATTGTCCCAGCTAATAAAGTACAAAGTACAAAGTAC---------------------------------------------------------------TATACTTACATATGT-TACTCACAAGA----ATATAAGTACCTCTTAAGGTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181038455 338 + 198365852 TTCTGAAGGCATTTTTGAGTAATTATTACATGTTCTGTACACTGCTGAAAATACAA---AAGAAAATGAAAAATTGTC----CCTAAAATAAGCTTAGAAGTCTAACTTCTCTTGGATATACAATCATCCATCTTGGAAAGATTAGCTT-------TGAAGCATCCCTAACCTGATTTCTTAGTATTAATAACAACTTGTAGAGACTCTTGGCCTTTAGTCAGGTAA----ATCTTCCTAATAAGCCACTTAATATGTTTCTGTTCTCGTTTTGAATTCCATTGTCCCAGCTAAT-------AAAGTATAAAGTAC---------------------------------------------------------------TATACTTACATATGT-TATTCACAAGA----ATATAAGTACCACTTAAGGTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174786234 342 + 192294377 TTCTGAAGGCATTTTTGAGTAATTATTACATGTTCTGTACACTGCTGAAAATACAA---AAGAAAATGAAAAATTGTC----CCTAAAATAAGCTTAGAAGTCCAACTTCTCTTGGATATACAATCATCCATCTTGGAAAGATTAGCTT-------TGAAGCATCCCTAACCTGATTTCTTAGTATTAATAACAACTTGTAGAGACTCTTGGCCTTTAGTCAGGTAA----ATCTTCCTAATAAGCCACTTAATATGTTTCTGTTCTCGTTTTGAATTCCATTGTCCCAGCTAATAAAG---AAAGTATAAAGTAC---------------------------------------------------------------TATACTTACATATGT-TATTCACAAGA----ATATAAGTACCACTTAAGGTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163454738 340 + 180432695 TTCTGAAGGCATTTTTGAGTAATTATTACATGTTCTGTAcactgctgaaaatacaa---aagaaaatgaaaaattgtc----CCTAAAATAAGCTTACAAGCCCAACTTCTCTTGGATATACAATCATCCATCTTGGAAAGATTAGCTT-------TGAAGCATCCCTAACCTGATTTCTTAGTATTAATAATAACTTGTAGAGACTCTTGGCCTTTAGTCAGGTAA----ATCTTCCTAATAAGCCACTTA--ATGTTTCTGTTCTCGTTTTGAATTCCATTGTCCCAGCTAATAAAG---AAAGTATAAAGTAC---------------------------------------------------------------TACACTTACATATGT-TATTCACAAGA----ATATAAGTACCACTTAAGGTG
i papAnu2.chr3             C 0 C 0
s calJac3.chr8              23826119 349 - 128169293 TTCTGAAGGCATTTTTGAATACTTATTACATACACTGTACACCACCAAAAATACAAAAGAGGAAAATGAAAAATTGTCCTTGCTTAAAATAAGCTTAGAAGTCCAACTTCTCTTGGATATATAATTATCCATCTTGGAAAGATTAGCTT-------TGAAGCATCTCTAAACTGATTTCTTAGTATTAATGATAAGTTGTAGAGATTCTTGGCCTTTAGTCAGATAA----ATTTTCCTAATAAGCCACTTAATATTTTTCTGTTCTAGTTTTGAATTCCATTGTCCCAACTAAT-------AAAGTACAAAGTAC---------------------------------------------------------------TATTCTTATATGTGT-TGTTCACAAGAATATATATAAGTACCTCTTAAGGTG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40464858 396 + 149736546 TTTTGAAGGAATTCTTAGTTTATTTTTGTATA---TGTGCACTTTTGAAAATAAAA-----GGAAATGAAATATGGTCCTTGCTTGAAACTTGCTGAAATGTTCAATTTTGTTTAGCTACAAAG---TCCATCCTAGAAGGACTAGCTTGAAAACCTGAACAGTCACCAAACCCATGTTTTGATTT-------GAGCTGCAGAGACTCTCAGCCTTTAGTGAAGTAATTGGCTATTCCCAATAAACCACTTCATATTCTTTTGCTCT--TTTTGAGTTTCTTTGTTTCAGGTAAT-------ACACTACAacacacacacacacacacacacacacacacacacacacacacacacaGGTGTGTGTGTGTGTGtatatatatatatatatatatatatTCATAGGA----ATGCAAAT---TGTGAAGAT-
i mm10.chr6                I 47 C 0
e canFam3.chr16             52162574 2279 -  59632846 I
e chlSab2.chr21            110482850   8 + 127223203 I

a score=432019.000000
s hg38.chr7_GL383534v2_alt    101153 123 +    119183 TGGTGTATACATTCTGGGAAGCCAGCTATGGAGACACAGGTGACTATCATCAGCCAGTACCAG-------TGATGGGCACCTATCATAGAGATGGGGCAGACAGCATCTTGAAATTGTCTAGACcagggg
s panTro4.chr7             143201035 123 + 161824586 TGGTGTATACATTCTGGGAAGCCAGCTATGGAGACACAGGTGACTATCATCAGCCAGTACCAG-------TGATGGGCACCTATCATAGAGATGGGGCAGACAGCATCTTGAAATTGTCTAGACcagggg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139023481 121 + 157549271 TGGTG--TACATTCTGGGAAGCCAGCTATGGAGACACAGGTGACTATCATCAGCCAGTACCAG-------TGATGGGCACCTATCATAGAGATGGGGCAGAGAGTATCTTGAAATTATCTAGATcaggga
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93144252 123 + 110113093 TGGTGTATACATTCTGGGAAGCCAGCTATGGAGACACAGGTGACTATCATCAGCCAGTACCAG-------TGATGGGCACCTATCATAGAGATGGGGCAGACAGCATCTTGAAATTGTCTAGACcagggg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181038793 123 + 198365852 TGGTGTATACATTCTAGAAAGTCAGCTATGGAGACACAGGTGACTATCATCAGCCAGTACAAG-------TGATGGGCACCCATCATAGAGATGGGGCAGACAGCATCTTGAAATTCTCTAGACcagggg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174786576 123 + 192294377 TGGTGTATACATTCTAGAAAGTCAGCTATGGAGACACAGGTGACTATCATCAGCCAGTACAAG-------TGATGGGCACCCATCATAGAGATGGGGCAGACAGCATCTTGAAATTCTCTAGACcagggg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163455078 123 + 180432695 TGGTGTATACATTCTGGAAAGTCAGCTATGGAGACACAGGTGACTATCATCAGCCAGTACAAG-------TGATGGGCACCCATCATAGAGATGGGGCAGACAGCATCTTGAAATTCTCtagaccagggg
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110482858 123 + 127223203 TGGTGTGTACCTTCTGGAAAGTCAGCTATGGAGACACAGGTGACTATCATCAGCCAGTACAAG-------TGATGGGCACCCATCATAGAGATGGGGCAGACAGCATCTTGAAACTCTCTAGACcagggg
i chlSab2.chr21            I 8 C 0
s calJac3.chr8              23826468 122 - 128169293 TGATGTGTACATTCTAGGAAGCCAGCTATGGAGACACAGGTGACTATCACCAGCCAGTACCAG-------TGATGGGCACCCATCATAGAGATGGGGCTAACAGCATTTTGAAATTGTCTAGACC-gggg
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40465254 127 + 149736546 --GTGTACATACTCTGTGAGGCTAGGC-TGGAGCTACAAGCGACTGTCATTGTTCAATACAAATGACAGTTGATGGGCACCCATCATATAGATGAGGCAGATGGCATCTTGAAGTTGTCTAGATCAAGGG
i mm10.chr6                C 0 I 143
e canFam3.chr16             52162574 2279 -  59632846 I

a score=1325129.000000
s hg38.chr7_GL383534v2_alt    101276 466 +    119183 tccccagcccctgggccatggaccagtaccagtctgtggcctgttaggaaccggactgcatggcaggaggtgagcagtgggtgagtgagcactaccgcctgagttctgcctcccatcagatcagtggtagcattaaattcttatagtacaaaccctattgtaaactgtgcatgtgagggatctaggttgtgtactcctt-caagaatctaatacctgatgatctgaggt-gaacagtttcatcctgaaaccatctcctcccccgactccccacccatggaaaaactgtcttcctcgaaatcagtccctggt--------tccaaaaaggttggggaccgctgGTCTAGACcaagtgttggaaaacttgttctgtgacgggctagagagtaaatattttatgctttgtgggccatatgctttctgctggaatgatttcagctctgctgttatatgttgtcaatggctgtttttacac
s panTro4.chr7             143201158 466 + 161824586 tccccagcccctgggccatggaccagtaccagtctgtggcctgttaggaaccgggctgcatggcaggaggtgagcagtgggtgagtgagcactaccgcctgagttctgcctcccatcagatcagtggtagcattaaattcttatagtacaaaccctattgtaaactgtgcatgtgagggatctaggttgtgtactcctt-caagaatctaatacctgatgatctgaggt-gaacagtttcatcctgaaaccatctcttcccccgactccccacccatggaaaaactgtcttcctcgaaatcagtccctggt--------tccaaaaaggttggggaccgctgGTCTAGACcaagtgttgaaaaacttgttctgtgaagggctagagagtaaatattttatgctttgtgggccatatgctttctgctggaatgatttcagctctgctgttatatgttgtcaatggctgtttttacac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139023602 466 + 157549271 tccccagcccctgggccatggaccagtaccagtctgtggcctgttaggaaccaggctgcatggcaggaggtgagcagtgggtgagtgagccctaccacctgagctctgactcccatcagatcagtggcagcattaaattcttatagtacaaaccctattgtaaactgtgcatgtgagggatctaggttgtacactcctt-caagaatctaatacctgatgatctgaggt-gaacagtttcatcctgacaccatctcctcccccgactccccacccatggaaaaactctcttccttgaaatcagtccctggt--------tccaaaaaggttggggactgctgGTCTAGACcaagtgttggaaaacttgttctgtgaagggctagagagtaaatattttatgctttgtgggccatatgctttctgctggaatgatttcaactctgctgttatatgttgtcagtgggtgtttttacac
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93144375 474 + 110113093 tccccagcctctgggccatggaccagtaccagtctgtggcctgttaggaactgggctgcatggcaggaggtgagcagtgggtgagtgagcactaccgcctgagctctgcctcccaacacatcagtggcagcattaaattcttacagcacaaaccctattgtaaactgtgcatgtgagggatctaggttgtgcactcctt-caataatctaatacctgatgatctgaggt-gaacagtttcatcctgaaaccatctcctcccccgactccccacccatggaaaaactgtcttccttgaaatcagtccctagttggggacatccaaaaaggttggggaccactgGTCTAGACcaagtgttggaaaacttgttctgtgaagggctagagagtaaatattttatactttgtgggccatatgctttctgctggaatgatttcaactctgctgttatatgttgtcaatggctgtttttacac
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181038916 465 + 198365852 tccccaagccctgcgccatgaaccagtaccagtc--gggcctgttaggaaccgggctgcacagcaggaggtgagcagtgggtgagtgagccctaccgcctgagctctgcctcccatcagatcagtggcagcattaaattcttatagcacaaacccagttgtgaactgtgcatgtgagggatctaggttgtgctctccttccaagaatctaatacctgatgatctgaggt-gaactgtttcatcctgaaaccgtctcctcccctgatgccccatccatggaaaaactgtcttccttgaaatcagtccctgat--------tccaaaaaggttggggactgctgGTCTAGACcaagtgttggaaaacttgttccgtgaagggctagacagtaaatattttatgctttgtgggccatatgctttttgctgtgatgatttcaactctgctgttacagtgtaaaaacagccattgacaaca
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174786699 465 + 192294377 tccccaagccctgcgccatgaaccagtaccagtc--gggcctgttaggaaccgggctgcacagcaggaggtgagcagtgggtgagtgagcactaccgtcggagctctgcctcccatcagatcagtggcagcattaaattcttatagcacaaacccaattgtgaactgtgcatgtgagggatctaggttgtgcactccttccaagaatctaatacctgatgatctgaggt-gaactgtttcatcctgaaaccatctcctcccctgatgccccatccatggaaaaactgtcttccttgaaatcagtccctgat--------tccaaaaaggttggggactgctgGTCTAGACcaagtgttggaaaacttgttccatgaagggctagacagtaaatattttatgctttgtgggccgtatgctttttgctgtgatgatttcaactctgctgttacagtgtaaaaacagccattgacaaca
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163455201 467 + 180432695 tccccaacccctgggccatgaaccagtaccagtctgtggcctgttaggaactgggctgcacagcaggaggtgagcagtgggtgagtgagcactaccgcctgagctctgcctcccatcAGATCAGTGGCAGCGTTAAATTCTTATAGCACAAACccaattgtgaactgtgcatgtgagggatctaggttgtgcactccttccaagaatctaatacctgatgatctgaggt-gaaccGTTTCATCCTGAAACCGTCTCCTCCCCTGAttccccatccatggaaaaactgtcttccttGAAATCAGTCCCTGAt--------tccaaaaaggttggggactgctggtctAGACCAAGTGTTGGAAAACTTGTTCCGTGAAGGgctagacagtaaatattttatgctttgtgggccatatgctTTTTGCTGTGATGATTTCAACTCTGCTGTTACAGTGTAAAAACAGCCATTGACAACA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110482981 467 + 127223203 tccccaacccctgcaccatgaaccagtaccagtccgtggcctgttaggaaccgggctgcacagcaggaggtgagcagtgggtgagtgggcactaccgcctgagctctgcctcccatcagatcagtggcagcattaaattcttatagcacaaacccaattgtgaactgtgcatgtgagggatctaggttgtgcactccttccaagaatctaatacctgatgatctgaggt-gaaccgtttcatcctgaaaccatctcctcccctgactccccatccacggaaaaactgtcttccttgaaatcagtccctgat--------tccaaaaaggttggggactgctgGTCTAGACcaagtgttggaaaacttgttccgtgaagggctagacagtaaatattttatgttttgtgggccatatgctttttgttgtgatgatttcaactctgctgttacagtgtaaaaacagccattgacaaca
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23826590 453 - 128169293 tccccagcccctgggccatggaccagtaccagtctgtggcctgttaggaaatgagctgcacagcaggaggtgagcagtgggtgagtgagcactaaccatctaactctgcctcctgtcagatcagtggcggcattggattttcatagcacgaaactttttgtgaactgtgcatgtgagggatctagattgtgcattctttccaagaatctagtacctgatgatctgaggtggagcagtttcatc---aagtcatctcctcccccgactccccatccataggaaaattgtattccttgaaatcagtccctggt--------tccaaaaaggttgcggaccactgGTCTAGACcaagtgttggaaaacttgttttgtgaagggctagatggtaaatattttatgctctgtggaccacatgctttctgctgtaatgacttcaactctgct-----------aaaacagccatcgacaac-
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40465381 143 + 149736546 I
e canFam3.chr16             52162574 2279 -  59632846 I

a score=372863.000000
s hg38.chr7_GL383534v2_alt    101742 121 +    119183 tataaatgagtggctgtgttccaataagactttatttataaatacaggtgataggccagatttgactcagaagttgtggtttattgaccc-TGGTACCTTTCATATGTAGCCTGAAG-AGCTG
s panTro4.chr7             143201624 121 + 161824586 tataaatgagtggctgtgttccaataagactttatttataaatacaggtgatgggccagatttgactcagaagttgtggtttattgaccc-TGGTACCTTTCATATGTAGCCTGAAG-AGCTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139024068 121 + 157549271 tataaatgagtggctgtgttccaataagactttatttataaatacaggtgatgggccagatctgactcagaagttgtggtttattgaccc-TGGTACCTTTCATATGTAGCCTGAAG-AGCTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93144849 121 + 110113093 tataaatgagtggctgtgttccaataagactttatttataaatacagatgataggccagatttgactcagaagttgtggtttgttgaccc-TGGTACCTTTCATATGTAGCCTGAAG-AGCTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181039381 117 + 198365852 tataaatgagtggctatgttccaataagac----tttataagtacaggttatgagccagatttgactcagaagttgtgttttgttgaccc-TGATACCTGTCATATGTAGCCTGAAG-AGCTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174787164 117 + 192294377 tataaatgagtggctatgttccaataagac----tttataagtacaggttataggccagatttgactcagaagttgtgttttgttgaccc-TGGTACCTGTCATATGTAGCCTGAAG-AGCTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163455668 117 + 180432695 TATAAATGagtggctatgttccaataagaC----TTTATAAGTACAGGTTATGGGCCAGATTTGACTCAGAAGTTGTGTTTTGTTGACCC-TGGTCCCTTTCATATGTAGCCTGAAG-AGCTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110483448 117 + 127223203 tataaatgagtggctatgttccaataagac----tttataagtacaggttataggccagatttgactcagaagttgtgttttgttgaccc-TGGTACCTTTCATATGTAGCCTGAAG-AGCTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23827043 121 - 128169293 -ataaatgagtggctctgttccaataagactttatttataaatacaggtgatgggccagatttgactcagaagttgtggtttgttgaccG-TGGTAGCTTTCATATATAGCCTAAAGAAGCTG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40465524  76 + 149736546 TACAAATGAGTAACTGTGTTTCAATAAGAT-------------------------------------------CTGTAGTTTGTTGCCCCATGGT---TCTTATATTTTGCCTAAAG-AGTTG
i mm10.chr6                I 143 C 0
e canFam3.chr16             52162574 2279 -  59632846 I

a score=1600466.000000
s hg38.chr7_GL383534v2_alt    101863 440 +    119183 TTCACTT--AATTTAAAGCATTTTAAAGATCACTTATACTCCAATCAGCAGAGCCTGGGGAGCTAAACCTGCCATGTTGTATGACATGTGTGTGTCAACCATTTTTTATGACA------ACCATAGTAACTGAATTTTCTATTCTGTACATAGCTCAGGCTTTTCGTTTCTGTAAATACTGAAAC-AAGAAGAAAAACATTTATATATTAGTTTTGATCATACATA---TCTCTGACTGGAGATCAAGTAGCCTTTGCTTTTTCTCCCTCGCACTTCAGGGAACTGAGAGAAGCCCAGCAGGCCCAGTCACCCCAGGGATATACCCATCATGGTGACACTGGGGTCTCTGGGACCCACACAGGATCAAGAAGCACAAAACGCCTGGTGGGAGGAAAGAGTGCAAGGTCTTCAAGCTTTACCTGTGAGTAATCTTCCCCTTAAGAACTCATTT
s panTro4.chr7             143201745 438 + 161824586 TTCACTT--AATTTAAAGCATTTTAAAGATCACTTATACTCCAATCAGCAGAGCCTGGGGAGCTAAACCTGCCATGTTGTATGAC--GTGTGTGTCAACCATTTTTTATGACA------ATCATAGTAACTGAATTTTGTATTCTGTACATAGCTCAGGCTTTTTGTTTCTGTAAATACTGAAAC-AAGAAGAAAAACATTTATATATGAGTTTTGATCATACATA---TCTCTGACTGGAGATCAAGTAGCCTTTGCTTTTTCTCCCTCGCACTTCAGGGAACTGAGAGAAGCCCAGCAGGCCCAGTCACCCCAGGGAGATACCCATCATGGTGACACTGGGGTCTCTGGGACCCACACAGGATCAAGAAGCACAAAACGCCTGGTGGGAGGAAAGAGTGCAAGGTCTTCAAGCTTTACCTGTGAGTAATCTTCCCCTTAAGAACTCATTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139024189 440 + 157549271 TTCACTT--AATTTAAAATATTTTAAACATCACCTACACTCCAATCAGCAGAGCCTGGGGAGCTAAACCTACCATGTTGTATGACATGTGTGTGTCAATCATTTTTTATGACA------ACCATAGTAACTGAATTTTCTATTCTGTACATAGCTCAGGCTTTTTGTTTCTGTAAATACTGAAAC-AAAAAGAAAAACATTTACATATTAGTTTTGATCATACATA---TCTCTGATTGGAGATCAAGTAGCCTTTGCTTTTTCCCCCTTGCACTTCAGGGAACTGAGAGAAGCCCAGCAGGCCCAGTCACCCCAGGGAGATACCCATCATGGTGACACTGGGGTCTCTGGGACCCACACAGGATCAAGAAGCACGAAACGCCTGGTGGGAGGAAAGAGTGCAAGGTCTTCAAGCTTTACCTGTGAGTAATCTTCCCCTTAAGAACTCATTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93144970 439 + 110113093 CTCACTT--AATTTAAAAC-TTTTACAGATCATTTATACTCCGATCAGCAGAGCCTGGGGAGCTAAACCTACCATGTCATATGACATGTGTGTGTCAACCATTTTTTATGACA------ACCATAGTAACTGAATTTTCTATTTTGTACATAGCTCAGGCTTTTTGTTTCTGTAAATGCTGAAAC-AAAAAGAAAAACATTTATATATTAGCTTTGATCATACATA---TCTCTGATTGGAGATCAAGTAGCCTTTGCTTTTCCCCCCTTGCACTTCAGGGAACTGAGAGAAGCCCAGCAGGCCCAGTCACCCCAGGGAGATACCCATCATGGTGACACTGGGGTCTCTGGGACCCACACAGGATCAAGAAGCACAAAACGCCTGGTGGGAGGAAAGAGTGCAAGGTCTTCAAGCTTCACCTGTGAGTAATCTTCCCCTTAAGAACTCATTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181039498 434 + 198365852 TTCACTT--AATTTAAAACATTTTAAAGATCATTTATACTCCAATCAGCAGAGTCTGGGGAGCTAAACCTACCATGTTGTATGACATGCATATGTCAACCATTTTTTATGACA------ACCATAGTAACTGAATTTCCTATACTGTACATAGCTCAGGCTTTT--TTTCTGTAAATACTGAAA-----AAGAAAAACATTTATATATTAGTTTTGATCATATATA---TCTCTGATTGGAGGTCAAGTAGTCTTTGCTTTTTCCCCCTTGCACTTCAGGGAACTGAGAGAAGCCCAGCAGGCCCAGTCACCCCAGGGAGATATCCATCATGACGACACTGGGGTCTCTGGGACCCACACAGGACCAAGAAGCACAAAACGCCTGGTGGGAGGAAAGAGTGCAAGGTCTTCAAGCTTTACCTGTGAGTAATCTTCCCCTTAAGAACTCATTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174787281 434 + 192294377 TTCACTT--AATTTAAAACATTTTAAAGATCATTTATACTCCAATCAGCAGAGTCTGGGGAGCTAAACCTACCATGTTGTATGACATGCATATGTCAACCATTTTTTATGACA------ACCATAGTAACTGAATTTCCTATTCTGTACATAGCTCAGGCTTTT--TTTCTGTAAATACTGAAA-----AAGAAAAACATTTATATATTAGTTTTGATCATATATA---TCTCTGATTGGAGATCAAGTAGTCTTTGCTTTTTCCCCCTTGCACTTCAGGGAACTGAGAGAAGCCCAGCAGGCCCAGTCACCCCAGGGAGATATCCATCATGACGACACTGGGGTCTCTGGGACCCACACAGGACCAAGAAGCACAAAACGCCTGGTGGGAGGAAAGAGTGCAAGGTCTTCAAGCTTTACCTGTGAGTAATCTTCCCCTTAAGAACTCATTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163455785 430 + 180432695 TTcagtt--aatttaaaacattttaaagatcatTTATACTCCAATCAGCAGAGTCTGGGGAGCTAAACCTACCATGTTGTATGACATGCATGTGTCAACCATTTTTTATGACA------ACCATAGTAACTGAATTTTCTATTCTGTACATAGCTCAggctttt--tttctgtaaatactgaaa-----aagaaaaacatttatatattagtTTTGATCATATATA---TCTC----TGGAGATCAAGTAGTCTTTGCTTTTTCCCCCTTGCACTTCAGGGAACTGAGAGAAGCCCAGCAGGCCCAGTCACCCCAGGGAGATAGCCATCATGATGACACTGGGGTCTCTGGGACCCACACAGGATCAAGAAGCACAAAACGCCTGGTGGGAGGAAAGAGTGCAAGGTCTTCAAGCTTTACCTGTGAGTAATCTTCCCCTTAAGAACTCATTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110483565 434 + 127223203 TTCAGTT--AATTTAAAACATTTTAAAGATCATTTATACTCCAATCAGCAGAGTCTGGGGAGCTAAACCTACCATGTTGTATGACATGTATGTGTCAACCATTTTTTATGACA------ACCATAGTAAGTGAATTTTCTATTCTGTACATAGCTCAGGCTTTT--TTTCTGTAAATACTGAAA-----AAGAAAAACATTTACATATTAGTTTTGATCATATATA---TCTCTGATTGGAGATCAAGTAGTCTTTGCTTTTTCCCCCTTGCACTTCAGGGAACTGAGAGAAGCCCAGCAGGCCCAGTCACCCCAGGGAGATAGCCATCATGATGACACTGGGGTCTCTGGGACCCATACAGGATCAAGAAGCACAAAACGCCTGGTGGGAGGAAAGAGTGCAAGGTCTTCAAGCTTTACCTGTGAGTAATCTTCCCCTTAAGAACTCATTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23827164 440 - 128169293 TTCACTT--AATTTAACACATTTTAAAGATCATTTATACTCCAATAAGCAGAGTCTGGGAAGCTAAACCTACCATGTTGTATGGCATGTGTGTGTCAACCATTTTTTATGACA------TCCATACTAACTGAATTTTCTATTCTGTATTTAGCTCAAGCTTTTTACTTCAGTAAATACTGAAAC-AAAAAGAAAAACAATCATATATTAGTTTTGATCATATGTA---TCTCTGATTGGAGATCAAGTAGCCTTTGCTTTTTCCACCTTGCACTTCAGGGAACTGAGAGAAGCCCAGCAGGCCCAGTCACCCCAGGGAGACATCCATTATGGTGACACTTGGATCTCTAGGACCCACACAGGATCAAGAAGCACAAAACGCCTGGTGGGAGGAAAGAGTGCAAGGTCTTCAAGCTTTACCTGTCAGTAATCCTCCCCTTAAGAACTCATTT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40465600 373 + 149736546 TTCACCTAGAATTTTAA---TTTTAAAGGTGATTCA---------------------------TGAAC----------------CATACATGTATCAACC-TTCTAAATGATAGTAAAGATCATAAGAATTGATGATGCCATTCTGCATACAGCTCAGGCTTG---ATCCTGTAAA-ACTGAAAT-AACAAGAGAA----------TTTAGCTATGACTATAAATACTCCCTCCCACTAGGGAAGACTTTACCCATGCCTGT-CTTCGTTG-ATTGCAGGGAACTGAAAAAAGCTCGGCATATCCAGACCCCTCAGAGAGAAGTCCACCATTGTTA---------TTATCAGATCTGCAAAGGCTCAAGACAC------CTCCTGGTGGGAGGAAGGAGGAAGGCGCCCTCAAGCTTCACCCGTGGGACATCCTCCGTGTAGGAACTCACTT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52164853 430 -  59632846 ttctttt--atttttaaaaattcttaacataatttatGCCCCAATCAGTAGGAATTAGGAAATCTAATCTGCCATGTGTTGTGGCATGTGTGTGCCAGCCATTTTTAAAGAAA------ATCACAGGAGCT-AATTTCTTATTCTGTGTATAGCTGAGGGTTG---TTTCTATAAATACTGAAATAAAAAAGAAAAA----TCTATGTTAGTTTAGATCATAAATATCATCTTTAGTTTAGGATCAAGTAATATATTTTTTTTTCCCTTTAATTGCCAGGGAACTGAGAGAAGCTCAGCAGGCCTGGTCCCCCCAGGAAGAG------CATAGTGACCCTGGGGTCTCTGGGACCCCCACAGGATCAAGATGTACCAAACGCCCGGTAGGAGGAAAAAGTGCAAAGTCTTCAAGCTTCACCTGTGGGAAGTCTTCCCCATAAGAACTCCCTT
i canFam3.chr16            I 2279 C 0

a score=2808.000000
s hg38.chr7_GL383534v2_alt    102303 4 +    119183 TGCA
s panTro4.chr7             143202183 4 + 161824586 TGCA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139024629 4 + 157549271 TGCa
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93145409 4 + 110113093 TGCA
i nomLeu3.chr13            C 0 C 0
s canFam3.chr16             52165283 4 -  59632846 CACA
i canFam3.chr16            C 0 I 30
e mm10.chr6                 40465973 0 + 149736546 C
e calJac3.chr8              23827604 0 - 128169293 C
e chlSab2.chr21            110483999 0 + 127223203 C
e papAnu2.chr3             163456215 0 + 180432695 C
e macFas5.chr3             174787715 0 + 192294377 C
e rheMac3.chr3             181039932 0 + 198365852 C

a score=124878.000000
s hg38.chr7_GL383534v2_alt    102307 310 +    119183 gccgggcgtggtggctcacgcctgtaatcccaacactttgggaggccaaggcaggtggatcatgaggtcaggagatcgaaaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaattagcagggcgaggtggcaggcgcctataatcccagctactcaggaggctgaggaaggagaatcgcttgaacccggga-ggtggagcttgcagtgagctgagatcacaccactgcactccagcctgggcaacagagcgagactctgtatctaaaaaa----aaaaaaaaaaaa--aaaaCTCATTC
s panTro4.chr7             143202187 306 + 161824586 gccgggcgtggtggctcacgcctgtaatcccaacactttgggaggccgaggcaggtggatcatgaggtcaggagatcgaaaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaattagcagggcgaggtggcaggcgcctatagtcccagctactcaggaggctgaggaaggagaatcgcttgaacccggga-ggtggagcttgcagtgagctgagatcgcaccactgcactccagcctgggtgacagagcgagactctgtatctaaaaaa----aaaaaaaaaaaa------CTCATTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139024633 315 + 157549271 gccaggcgtggtggcttatgcctgtaatcccaacactttgggaggccgaggcgggcggatcatgaggtcaggagatcgaaaccatcctggctaatacggtgaaaccccgtctctactaaaaccacaaaaaattagcagggcgaggtggcaggcgcctgtagtccaagctactcaggaggctgaggaaggagaatcgcttgaacccgggagggtggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcaagactctatatctagaaaaaaacaaaaaaacaaaa--aaaaCTCATTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93145413 311 + 110113093 gctgggcgcggtggctcacacctgtaatcccaacactttgggaggccgaggggggcggatcatgaggtcaggagatcgaaaccatcctggctaacgcggtg-aacctcgtctctactaaaaatacaaaaaattagcagggcgaggtggcaggggcctgtagtcccagctactcaggaggctgaggaaggagaatcgcttgaacctggga-ggtggagcttgcagtgagctgagatcacgccactgcactccagcttgcacgacagagcgagactctgtatctaaaaaa----aaaaaaaaaaaaacaaaaCTCCTTC
i nomLeu3.chr13            C 0 C 0
s mm10.chr6                 40465973  93 + 149736546 ----------CTGGCCTTTTGCTACA----CAACAC-------------------------------------------AGCCTTT-------------TGAAAACTC----TTAC--AGGATACAAAA--------------------------------------------------------------------CTGAACC-----------AGCTTG-AATGTACAAAGATCTCA------------------------AAAGCCATCC--------------------------------------------
i mm10.chr6                C 0 C 0
e canFam3.chr16             52165287  30 -  59632846 I
e calJac3.chr8              23827604   0 - 128169293 C
e chlSab2.chr21            110483999   0 + 127223203 C
e papAnu2.chr3             163456215   0 + 180432695 C
e macFas5.chr3             174787715   0 + 192294377 C
e rheMac3.chr3             181039932   0 + 198365852 C

a score=101100.000000
s hg38.chr7_GL383534v2_alt    102617 34 +    119183 TGCACCAGCCAACCTTTTACTGTAGAACCTCTGT
s panTro4.chr7             143202493 34 + 161824586 TGCACCAGCCAACCTTTTACTGTAGAACCTCTGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139024948 34 + 157549271 TGTACCAGCCAACCTTTTACTGTAGAACCTCTGT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93145724 34 + 110113093 TGCACCAGCCAACCTTTTACTGTAGAACCTCTGT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181039932 34 + 198365852 TGCACCAGCCAACCTTTTACTGTAGAACCTCTGG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174787715 34 + 192294377 TGCACCAGCCAACCTTTTACTGTAGAACCTCTGG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163456215 34 + 180432695 TGCACTAGCCAACCTTTTACTGTAGAACCTCTGG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110483999 34 + 127223203 TGCACCAGCCAACCTTTTACTGTAGAACCTCTGG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23827604 34 - 128169293 TGCACTAGCCAACCTTTTACTGTAAAACCTCCAG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40466066 13 + 149736546 -----------------TGATGTGGCATCT----
i mm10.chr6                C 0 C 0
e canFam3.chr16             52165287 30 -  59632846 I

a score=3945915.000000
s hg38.chr7_GL383534v2_alt    102651 1124 +    119183 AAATAGATATCAGCTGTCCCAACCTTCCTCTTATAAAATGAAAAAATTAGCC-AACTTGAATGCCCAAGGATTTCAAAAGCTACTACTAATTTACCA-TTTATAGCCAAGATCCTAAAGCTAGTAAGGCTTTGTCTTCTCAAGGGTCCCAGACACAATAATTGGAAGCCATTTCTCTTCTCTATTGTTATATTCCTAATGCCACTGATCAATAACTTATTTACTTCTCACACTT-TTGATGAACAGCAGGAGAGCGTGAGCCTCTGCATTAAAGGAAGAAAAGGAAAACAGCCCTTGGTTTGGCCTATGGATTACGAGGTTGCTGTTGCTG-ATTCCCCACCAAAGATCCCAGGGAC--TCGTTGTACATAGAAAGGAATAGAATTTAGTTTAGAGTTGAAGTCACAGCTTAC-AGAAAATG-TGCCTGGA-TTTCCACAGCGCTTCCCA-GGTTATATGATGCTGTTCCTAAGAGAGAATTCCCAGCTTCTTTGAGGAAGTGGGTCTCCTAATGT------------------AT----------------ACCCTT---TCTGATATTGTATTTATTAAATAAATGGTTTCACCATTATGTGAGGTGGGTAAAAGTTAGACTGCATGCAACTTGGACATCTCTGAGCTGGTTGTTAACTTGCAGAACAAAAATGCTGTGGGGAGAGGCTTCAGGGAAAACTTGATGTGCCTGTGGTTGTTCTCCATCTATTTGCCCTGCC-----TCTCTT---GCTG-TTCTGGTTGG-TTTGATATTCTG--------GGTCTCACCAATTTCT-CTTGATTTTT------------GTGAGAATTTGGCTTT---GTTTCCTGTTTTTTAAAATCATATTTTA--TCTAAATCC-TTTTTCTGTACACAT-TTTTAAAGGAAGAGAATACTGTATTTTTAAATAAAGGTTTTTATCTTGTCCAAAGCCTAATTACAGGTAAAATATC---CTTTGTAAAATGTAACTAACAAAGAATGAGAAATTTATGTCGGAGAACATTTTATGAATAAAAGGG-----------TAAGAGAATTGAGTGGGTCAGTAGTAACAGGTCTTGGTGGCAAGTCTCAGCTTCACAGTTCCAACAGTTAATGATGGTCAGGATCTGCTAGA-A-AATTATGTTGGTCATAAAGGTATTTGATAAGCTCTGTTTGTGTCATCTTAGTGAATGCAACCTGTTAA
s panTro4.chr7             143202527 1124 + 161824586 AAATAGATATCAGCTGTCCCAACCTTCCTCTTATAAAATGAAAAAATTAGCC-AACTTGAATGCCCAAGGATTTCAAAAGCTACTACTAATTTACCA-TTTATAGCCAAGATCCTAAAGCTAGTAAGGCTTTGTCTTCGCAAGGGTCCCAGACACAATAATTGGAAGCCATTTCTCTTCTCTATTGTTATATTCCTAATGCCACTGATCAATAACTTATTTACTTCTCACACTT-TTGATGAACAGCAGGAGAGCGTGAGCCTCTGCATTAAAGGAAGAAAAGGAAAACAGCCCTTGGTTTGGCCTATGGATTACGAGGTTGCTGTTGCTG-ATTCCCCACCAAAGATCCCAGGGAC--TCGTTGTACATAGAAAGGAATAGAATTTAGTTTAGAGTTGAAGTCACAGCTTAC-AGAAAATG-TGCCTGGA-TTTCCACAGCGCTTCCCA-GGTTATATGATGCTGTTCCTAAGAGAGAATTCCCAGCTTCTTTGAGGAAGTGGGTCTCCTAATGT------------------AT----------------ACCCTT---TCTGATATTGTATTTATTAAATAAATGGTTTCACCATTATGTGAGGTGGGTAAAAGTTAGACTGCATGCAACTTGGACATCTCTGAGCTCGTTGTTAACTTGCAGAACAAAAATGCTGTGGGGAGAGGCTTCAGGGAAAACTTGATGTGCCTGTGGTTGTTCTCCATCTATTTGCCCTGCC-----TCTCTT---GCTG-TTCTGGTTGG-TTTGATATTCTG--------GGTCTCACCAATTTCT-CTTGATTTTT------------GTGAGAATTTGGCTTT---GTTTCTTGTTTTTTAAAATCATATTTTA--TCTAAATCC-TTTTTCTGTACACAT-TTTTAAAGGAAGAGAATACTGTATTTTTAAATAAAGGTTTTTATCTTGTCCAAAGCCTAATTACAGGTAAAATATC---CTTTGTAAAATGTAACTAACAAAGAATGAGAAATTTATGTCGGAGAACATTTTATGAATAAAAGGG-----------TAAGAGAATTGAGTGGGTCAGTAGTAACAGGTCTTGGTGGCAAGTCTCAGCTTCACAGATCCAACAGTTAATGATGGTCAGGATCTGCTAGA-A-AATTATGTTGGTCATAAAGGTATTTGATAAGCTCTGTTTGTGTCATCTTAGTGAATGCAACCTGTTAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139024982 1128 + 157549271 AAATAGATATCAGCTGTCCCAACCTTCCTCTTATAAAATGAAAAAATTAGCCAAACTTGAATGCCCAAGGATTTCAAAAGCTACTACTAATTTACCA-TTTATAGCCAAGATCCTAAAGCTAGTAAGGCTTTGTCTTCGCAAGGGTCCCAGATACAATAATTGGAAGCCATTTCTCTTTTCTATTGTTATATTCCTAATGCCACTGATCAGTAACTTATTTACTTCTCACACTT-TTGATGAACAGCAGGAGAGCGTGAGCCTCTGCGTTAAAAGAAGAAAAGGAAAACAGCCCTTGGTTTGGCCTATGGATTACGAGGTTGCTGTTGCTG-ATTGCCCACCAAGGATCCCAGGGAC--TCATTCTACATAGAAAGGAATAGGATTTAGTTTAGAGTTGAAGTCAGAGCTTAC-AGAAAATG-TGCCTGGA-TTTCCACAGTGCTTCTCA-GGTTACATGATGCTGTTCCTAAGAGAGAATTCCCAGCTTCTTTGAGGAAGTGGGTCTCCTAATGT------------------AT----------------ACCCTT---TCTGATATTGTATTTATTAAATAAATGGTTTCGCCATTATGTGAGGTGGGTAAAAGTTAGACTGTATGCAACTTGGACATCTCTGAGCTGGTTGTTAACTTGCAGAACAAAAATGCTGTGGGGAGAGGCTTCAGGGAAAACTTGATGTGCCTGTGGTTGTTTTCCATCTATTTGCCCTGCC-----TCTCTTCTGGCTG-TTCTGGTTGG-TTTGATATTCTG--------GGCCTCACCAATTTCT-CTTGGTTTTT------------ATGAGAATTTGGCTTT---GTTTCCTGTTTTTTAAAATCATATTTTA--TCTAAATCC-TTTTTCTGTACACGT-TTTTAAAGGAAGAGAATACTGTATTTTTAAATAAAGGTTTTTATCTTGTCCAAAGCCTAATTACAGGTAAAATATC---CTTTGTAAAATGTAACTAACAAAGAATGAGAATTTTATGTCGGAGAACATTTTACGAATAAAAGGG-----------TAAGAGAATTCAGTGGGTTAGTAGTAGCAGGTCTTGGTGGCACGTCTCTGCTTCGTAGATCCAACAGTTAATAATGGTCAGGATCTGCTAGG-A-AATTATGTTGGTCATAAAGGTATTTGATGAGCTCTGTTTGTATCATCTTAGTGAATGCAACCTGTTAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93145758 1126 + 110113093 AAACAGATATCAGCTGTCCCAACCTTCCTCTTATAAAAGGAAAAAGTTAGCC-AACTTGAATGCCCAAGGATTTCAAAAGCTACTACTAATTTACCA-TTTATAGCCAAGATCCTAAAGCTAGTAAGGCTTTGTATTCACAAGGGTCCCAGATACAATAATTGGAAGCCATTTCTCTTCTCTATTGTTATATTCCCAATGCCACTGATCAATAACGTATTTACTTCTCACACTT-TTGATGAACAGCAGGAGAGCGTGAGCCTCTGCATTGAAGGAAGAAAAGG-AAACAGCCCTTGGTTTGGCCTATGGATTACGAGGTTGCTGTTGCCG-ATTCCCCACCAAGGATCCCAGGGAC--TCATTGTACATAGAAAGGAATAGAATTTAGTTTAGAGTTGAAGTCACAGCTTAC-AGAAAATG-TGCCTGGA-TTTCCACAGTGCTTCCCA-GGTTATATGATGCTGTTCCTAAGAGAGAATTCCCAGCTTCTTTAAGGAAGTGGGTCTCCTAATGT------------------AT----------------ACCCTT---TCTGATAGTGTATTTATTAAATAAATGGTTTCACCATTATGTGAGGTGGGTAAAAGTTAGACTGTATGCAACTTGGACATCTCTAAGCTGGTTGTTAACTTGCAGAACAAAAATGCTGTGGGGAGAGGCTTCAGGGAAAACTTGATGTGCCTGTGGTTGTTCTCAATCTATTTACCCTGCC-----TCTCTTCTGGCTG-TTCTGGTTGG-TTTGATATTCTG--------GGTCTCACCAATTTCT-CTTGATTTTT------------GTGAGAATTTGGCTTT---GTTTCCTGTTTTTTAAAATCATATTTTA--TCTAAATCC-TTTTTCTGGACACAT-TTTTAAAGGAAGAGAATACTGTATTTTTAAATAAAGGTTTTTATCTTGTCCAAAGCCTAATTACAGGTAAAATATC---CTTTGTAAAATGTAACTAACAAAGAATGGGAAATTTATGTTGGAGAACATTTTATGAATAAAAGGG-----------TAAGAGAATTCAGTGGGTTAGTAGTAACAGGTCTTGGTGGCAAGTCTCAGCTTCACAGATCCAACAGTTAATAATGGTCAGGATCTGCTAGA-A-AATTATGTTGGTCATAAAGGTATTTGATAAGCTCTGTTTGTGTCATCTTAGTGAATGCAACCTGTTAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181039966 1124 + 198365852 AAATAGATACCAGCTGTCCCAACCTTCCTCTTATAAAATGAAAAAATTAGCC-AACTTGAACGCCCAAGGATTTCAAAAGCCACTACTAATTTACCATTTTATAGCCAAGATCCTAAAGCTAGTAAGGCTTTGTATTAGCAATGGTCCCAGATACAGTAATTGGAAGCCATTTCTC--CTCTATTGTTATATTCCTAATGCCACTGATCAATAACTTATTTACTTCTCACACTT-TTGATGAACAGCAGGAGAGCGTGAGCCTCTGCACTGAAGGAAGAAAAGG-AAACAGCCCTTGGTTTGGCCTATGGATTAAGAGGTTGCTGTTGCTG-ATTCCTCACGAAGGATCCCAGGGAC--TCATTGTACATAGAAAGGAATAGAATTTAGTTTAGAGTTGAAGTCACAGCTTAC-AGGAAATG-TGCCTGGATTTTCCACAGTGCTTCCCA-GGTTATATGATGCTGTTCCTAAGAGAAAATTCCCAGCTTC-TTGAGGAAGTGGGTCTCCTAATGT------------------AT----------------ACCCTT---TCTGATATTGTATTTATTAAATAAATGGCTTCACCATTATGTGAGGTGGGTAAAAGTTAGACTGTATGCAACTTGGACATCTCTGAGCTGGCTGTTAACTTGCAGGACAAAAATGCTGTGGGGAGGGGCTTCAGGGAAAACTTGATGTGCCTGTGGTTGTTCTCCATCTATTTGCCCTGCC-----TCTCTTCTGGCTG-TTCTGGTTGG-TTTGATATTCCG--------GGTCTCACCAATTTCT-CATGATTTTT------------ATGAGAATTTGGCTTT---GTTTCCTGTTTTTTAAGATCATATTTTA--TCTAAATCC-TTTTTCTATACACAT-TTTAAAAGGAATAGAATACTGTA-TTTTAAATAAAGGGTTTTATCTTGTCCAAAGCCTAATTACAGGTAAAATATC---CTTTGTAAAATGTAACTAACAAAGAACAAGGAATTTATGTTGGAGAACATTTTATGAATAAAAGGG-----------TAAGAGAATTCAGTGGGTCAGTAGTAACAGGTCTTGGTGGCAAGTGTTAGCTTCACAGATCCAACAGTTAATAATGGTCAGGCTTTGCTAGA-A-AATTATGTTGGTCATAAAGGTATTTGATAAGCTCTGTTTGTGTCATCTTAGTGAATGCAACCTGTTGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174787749 1124 + 192294377 AAATAGATACCAGCTGTCCCAACCTTCCTCTTATAAAATGAAAAAATTAGCC-AACTTGAACGCCCAAGGATTTCAAAAGCCACTACTAATTTACCATTTTATAGCCAAGATCCTAAAGCTAGTAAGGCTTTGTATTAGCAATGGTCCCAGATACAGTAATTGGAAGCCATTTCTC--CTCTATTGTTATATTCCTAATGCCACTGATCAATAACTTATTTACTTCTCACACTT-TTGATGAACAGCAGGAGAGCGTGAGCCTCTGCACTGAAGGAAGAAAAGG-AAACAGCCCTTGGTTTGGCCTATGGATTAAGAGGTTGCTGTTGCTG-ATTCCTCACGAAGGATCCCAGGGAC--TCATTGTACATAGAAAGGAATAGAATTTAGTTTAGAGTTGAAGTCACAGCTTAC-AGGAAATG-TGCCTGGATTTTCCACAGTGCTTCCCA-GGTTATATGATGCTGTTCCTAAGAGAAAATTCTCAGCTTC-TTGAGGAAGTGGGTCTCCTAATGT------------------AT----------------ACCCTT---TCTGATATTGTATTTATTAAATAAATGGCTTCACCATTATGTGAGGTGGGTAAAAGTTAGACTGTATGCAACTTGGACATCTCTGAGCTGGCTGTTAACTTGCAGGACAAAAATGCTGTGGGGAGGGGCTTCAGGGAAAACTTGATGTGCCTGTGGTTGTTCTCCATCTATTTGCCCTGCC-----TCTCTTCTGGCTG-TTCTGGTTGG-TTTGATATTCCG--------GGTCTCACCAATTTCT-CATGATTTTT------------ATGAGAATTTGGCTTT---GTTTCCTGTTTTTTAAGATCATATTTTA--TCTAAATCC-TTTTTCTATACACAT-TTTAAAAGGAATAGAATACTGTA-TTTTAAATAAAGGGTTTTATCTTGTCCAAAGCCTAATTACAGGTAAAATATC---CTTTGTAAAATGTAACTAACAAAGAACAAGAAATTTATGTTGGAGAACATTTTATGAATAAAAGGG-----------TAAGAGAATTCAGTGGGTCAGTAGTAACAGGTCTTGGTGGCAAGTGTTAGCTTCACAGATCCAACAGTTAATAATGGTCAGGCTTTGCTAGA-A-AATTATGTTGGTCATAAAGGTATTTGATAAGCTCTGTTTGTGTCATCTTAGTGAATGCAACCTGTTGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163456249 1127 + 180432695 AAATAGATACCAGCTGTCCCAACCTTCctcttataaaatgaaaaaattagcc-aacttGAACGCCCAAGGATTTCAAAAGCCACTACTAATTTACCATTTTATAGCCAAGATCCTAAAGCTAGTAAGGCTTTGTATTAGCAATGGTCCCAGATACAGTAATTGGAAGCCATTTCTC--CTCTATTGTTATATTCCTAATGCCACTGATCAATAACTTATTTACTTCTCACACTT-TTGATGAACAGCAGGAGAGCGTGAGCCTCTGcactgaaggaagaaaagg-aaacagcccTTGGTTTGGCCTATGGATTAAGAGGTTGCTGTTGCTG-ATTCCCCACGAAGGATGCCAGGGAC--TCATTATACATAGAAAGGAATAGAATTTAGTTTAGAGTTGAAGTCACAGCTTAC-AGGAAATG-TGCCTGGATTTTCCACAGTGCTTCCCA-GGTTATATGATGCTGTTCCTAAGAGAAAATTCCCAGCTTC-TTGAGGAAGTGGGTCTCCTAATGT------------------AT----------------ACCCTT---TCTGatattgtatttattaaataaatggctTCACCATTATGTGAGGTGGGTAAAAGTTAGACTGTATGCAACTTGGACATCTCTGAGCTGGCTGTTAACTTGCAGGACAAAAATGCTGTGGGGAGGGGCTTCAGGGAAAACTTGATGTGCCTGTGGTTGTTCTCCATCTATTTGCCCTGCC-----TCTCTTCTGGCTG-TTCTGGTTGG-TTTGATATTCCG--------GGTCTCACCAATTTCT-CATGAttttt------------atgagaatttggcttt---gtttcctgttttttaagatcatatttta--tctaaatcc-tttttctatacacat-tttaaaaggaatagaatactgta-ttttaaataaagggTTTTATCTTGTCCAAAGCCTAATTACAGGTAAAATATCCTTCTTTGTAAAATGTAACTAACAAAGAACAAGAAATTTATGTTGgagaacattttataaataaaaggg-----------tAAGAGAATTCAGTGGGTCAGTAGTAACAGGTCTTGGTGGCAAGTCTCAGCTTCACAGATCCAACAGTTAATAATGGTCAGGCTCTGCTAGA-A-AATTATGTTGGTCATAAAGGTATTTGATAAGCTCTGTTTGTGTCATCTTAGTGAATGCAACCTGTTAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110484033 1121 + 127223203 AAATAGATACCAGCTGTCCCAACCTTCCTCTTATAAAATGAAAAAATTAGCC-AACTTGAATGCCCAAGGATTTCAAAAGCCACTACTAATTTACCATTTTATAGCCAAGATCCTAAAGCTAGTAAGGCTTTGTATTAGCAATGGTCCCAGATACAGTAACTGGAAGCCATTTCTC--CTCTATTGTTATATTCCTAATGCCACTGATCAATAACTTACTTACTTCTCACACTT-TTGATGAACAGCAGGAGAGCGTGAGCCTCTGCACTGAAGGAAGAAAAGG-AAACAGCCCTTGGTTTGGCCTATGGATTCTGAGGTTGCTGTTGCTG-ATTCCCCACGAAGGATCCCAGGGAC--TCATTGTACATAGAAAGGAATAGAATTTAGTTTAGA-TTGAAGTCACAGCTTAC-AGGAAATG-TGCCTGGATTTTCCACAGTGCTTCCCA-GGTTATATGATGCTGTTCCTAAGAGAAAATTCCCAGCTTC-TTGAGGAAGTGGGTCTCCTAATGT------------------AT----------------ACCCTT---TCTGATATTGTATTTATTAAATAAATGGCTTCACCATTATGTGAGGTGGGTAAAAGTTAGACTGTATGCAACTTGGACATCTCTGAGCTGGCTGTTAACTTGCAGAACAAAAATGCTGTGGGGAGGGGCTTCAGGGAAAACTTGAAATGCCTGTGGTTGTTCTCCATCTATTTGCCCTGCC-----TCTCTTCTGGCTG-TTCTGGTTGG-TTTGATATTCTG--------GGTCTTACCAATTTCT-CATGATTTTT------------ATGAGAATTTGGCTTT---GTTTCCTGTTTTTTAAGATCATCTTTTA--TCTAAATCC-TTTTTCTATACACAT-TTTAAAAGGAATAGAATACTGTA-TTTTAAATAAAGGTTTTTATCTTGTCCAAAGTCTAATTACAGGTAAAATATC---CTTTGTAAAATGTAACTAACAAAGAACAAGAAATTTATGTTGGAGAACATTTTATGAATAAAAGGG-----------TAAGAGAATTCAGTGGGTCAGTAGTAACAGGTCTTGGTGGCAAGTCTCAGCTTCACAGATCCAACAGTTAATAATGGTCAGGCTCTGCTAGA-A-AAT--TGTTGGTCATAAAGGTATTTGATAAGCGCTGTTTGTGTCATCTTAGTGAATGCAACCTGTTGA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23827638 1111 - 128169293 AAACAGACATTAGGTGTCCCAACCTTCCTCTTATAAAATAAAAAAATCAGCC-GACTTGAATGCCCAAGGATTTCAAAAGCTACTGCTAACTCAGCG-TTTATAGCCAAGATCCTAAAGCTAGTAAGGCTTTGTATTAACAATGGTCCCAGATACAATAATTGGAAGGTATTTCTCTTCTCTGTTGTTATATTCCTAATGCCATTGATCAACAATTTATTTACCTCTCATGCTT-TCAATGAACAGCTGGAGAACATG-------------AAGGAAGAAAAGG-AGACAGCCCTTGATTTGGCCTATGGATTATGAGGTTGCTGTTGCCGAATTCCCCACCAAGGAT-CCAGGGAC--TCATTGTACATAGAAAGGAATAGAATTTAGTTTAGAGTTGAAGTAATAGCTAAC-AGAGAATG-TGCCTGAA-TTTCCATGGTGCTTCCCA-AGTTATAGGATGCTACTCCTAAAAGAGAATTCTCACCT---TTGAGGAAGCAGGTCTCCTAATGT------------------AT----------------GCCCTT---TCTGATACTGTATTTATTAAATAAATGGCTTCACTATTATGTGAGGTGGGTAAAAGTTAGACTCTATGTAACTTGGACATCTTTGAGTTGGTTGTTAACTTGCAGAACAAAAATGCTGT-GGGAGGGGCTTCAAGGAAAACTCAGCGTGACTGTGGCTGTTCTCCATCTATTTGCCCTGCC-----TCTCTCCTGGCTG-TTCCGGTTGG-TTTGATACTCTG--------GGTCTCACCAATTTCC-CCTGATTTTT------------ATGAGGATTTGGCTTT---GTTTCCTGTTTTTTA--ATCCTATTTTA--TTGAAATCCTTTTTTCTGTATACAT-TTTAAAAGGAATAGAACACTGTATTTTTAAATAAAGGTTTTTATCTTGTCCAAAGCCTAATTACTAGTAAAATATTCTTCTTTGTAAAATGTAACTAACAAAGAATGAGAAATTTATATTGGAGAACATTTTATGAATAAAAGGG-----------TAAGATAATTCAGTGGGTTGGTAGTAACAGGTCTTGGTGGCAAGTCCCAGCTTCACAAATCCAGAAGCTAATAATGGTCAGGCTCTCCTGGA-A-AATTATGTTGGTCTTAAAGGTGTTTGATAAGTTCTGTTTGTGTCATCTTAGTGAATGCAACCTGTTAA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40466079  941 + 149736546 --ATAGGT----------------------------------AAGATCACCG-AGCTT-------CCAGGGTTTC-----------------------TCCTTAGCAACGGTCTTGTGTATCGTAAGT-------------------------------ACTGGAGTC---TTCTTTTCCCTAGTGATGTATTTCTAGAGCTGCTTACTAAGGA-----------------CTC-CTAATGAATAATCAGAAAACATGG--CTCTGAACTGAAAGGAGAAGCAG-AAATGTGC--TACTTTGGCCTATGGATTAAGAAGCTGCCGTTACTT-ATTCTTCACT-GGGGTCCAAAGAACTTTCCCTGTACATAAAAAGGGATAAAATATGGC------TTTAAGTGCCAGCTTCCAAGAGAATGTTGCCTGTA--TTTCAGAGTGCTTTCCA-AGATCTGT-CTGCTCCTCC--------AATCACCAGCTCCTTTGAGCAAGGAATTTGCCTACTATACTTTCTGAATGGAAGCAAT----------------CTCTTT---TCTGATTTTGCA-TTATTAAATAAAAGACT--ATCATTGTGTGAAACAACT-AGAGTAAGACTAT----AATTTGGACATTCCTGAGCTGCTTATTAATTTGTGAAACACAATCAGCAGAGGCAGAGGACCCAGG--AATTTTGGTGTACC------TGTTCCCCGTGTGTTCCTCACGTCTTAGGTCTCTG-TGGCTGACTCCAGTTGC-TTTTCAGTTTTGAACATCATAGCATCATCTGGTTCT-CTTGATTTTTTTTTTTTTTTACACCAGAACTCATCCTTTTGTTTTCTTGCTTTTTAA---CATATTTT-------AATCC-----------------------------AGATCATTGTA------AATAAAGA-TTTTATCTTATCCAAAGAC-GAGCATGGGTAAAACATTCTTATTTGTGCTGTGT-----ACAAAGAATGTGAACTGAACGTTAGAG--CTTCTTGTAATTAGGAGGA-----------AATGG---------GGATCATTAGTGGCATGTCTTTGTG-------TTAACACCATAAACCCAATGGC---------ACAGGTACATCTATA-GTGACAATATTGTTCATAAATATATGC-----------TTTTTACAGTCTTAATGAAGGCAACCTGttaa
i mm10.chr6                C 0 I 12
s canFam3.chr16             52165317 1137 -  59632846 AAATAGTTATTGACCATGTCAACCTTCTTGT----AAATGGGAAGATTAACC-AACTTGAATGCCCAAAGATTTCAATAACCACTCCTAATTTAGCA-TTTACAGCCAAGGTCCTCAAGCTAGTAAGGCCCTGTATTAGCAAC-GTCCCAGATACAATAACTGGAAGC-ATTTATCTTCTCTATTGATATATTCCTAAGGCTACCTATCAACAGTTTGTTCACTTGTCACGCTCACTGATGCACAGTGGGAAAGCACGCATCTCTGAACTGAA---AGAGAAGG-CAGTGGCCCTAGGCACGCCATATGGAATAAGAGGCTGCTGTAGCTG-GTTGCCTACTGAGGA--ACAGGGACTCTCCCTGCACGTAGAAAGGAATATAATTTTGTTTTGAATTGAGGTAACTGCTTTC-AAGAAATG-TGCATGTA-TTTCAGTAATGCTTCTTAGGGGTAAATGATGGTATTCCTAAAAT--AATTCTCAGCCACTTTGAGCAAGTGGTTTTCCTACTGT------------------ATTCTTTCAGTGAAGACAATCCTTTCCTCTGATAGTATATTTATTAAATAAATGGCTTCAACATTATGTGAGGTGGGT-AGAGATAGACTATCTATAACTTGTA-ATTTCTGAACTGGCTATTAACTTATGGAACAAGA---CCCTGGGTATGGGGTTCAGGGAACATTTAATGTG---GTGGTTCTT--CAAAATATTTGCCCTAAC-----CCTCTTGTAATTG-TTAGGATTGGTTTTGATTTTCTG--------GGTGTCACCAAATTCTCCTTGACTTTT------------ATCAGAATTTGGCTTT---GTTTCCTGTGATTTT--ATCATATTTTAATCCTGATTAT-TTTCTCTGTATATATATTTTAAGGGAATAGAACAT-----TTGTAAATAAAGGTTTTTATCTTGTCCAAAGTC-AGATATGGGTAAAGTACTCTTCTTTATAATATGTAACCATCAAAGAGTGAGAAATTTCTGTTGGAAACTATTTCATGAGTAGATAGGGAGTAGATAGATGAGAACATTTGGTAGATTGGTAGTAACAGGTCTTGGCTGCAAAGCCCAGCTTTGTGGGCCTAAAAGCCAATAATGGTCAGGCTCTAATATATA-AAATACTTCTGTCATAAAGGCATTTGACAACTTCTA-GTGCATCATGTTAATTAAGGTAGCCTGTTAA
i canFam3.chr16            I 30 C 0

a score=1458142.000000
s hg38.chr7_GL383534v2_alt    103775 441 +    119183 TGA--TAATGGCTTTTTCGCTGCTTGATTTTCTTCTTTT--CCTCATT----------------------------------TTTAAAAGCTAATTAAGTTTTTTT-AATTGAATAAACCCTAATACTATTCTTTGTTCTGCTTTGGAGTAGCAGTTCTTTCCATGCAATTAAGT-GTGGTGTTGGTCTTCCTATAGCCCATTGCCATTTTTCTTTA-------CTAGGCTCTGTTCAAAATTATAAAATGGGGTTAGTTTATCTCTTGCCACCTCCCCCTCAAC----ACACACACACCAGGCCATGTTCCTTGTA--GTATAGTACAAGGTCAACCACAATTTCTGATTTAGAAACAGGGAAATTATTAAGTACATCC--------AGTGTATAGATGAGAATTGTTTGGTTATATTAGTCTTCTCAGGCATTGATAACTATGACTGTTTGGGTCTACAGCCTCTTCTCTACTGTGTTCCTC--AGCCTAGCTTCGCACCTG
s panTro4.chr7             143203651 440 + 161824586 TGA--TAATGGCTTTTTCGCTGCTTGATTTTCTTCTTTT--CCTCATT----------------------------------TTTAAAAGCTAATTAAGTTTTTTT-AATTGAATAAACCCTAATACTATTCTTTGTTCTGCTTTGGAGTAGCAGTTCTTTCCATGCAATTAAGT-GTGGTGGTGGTCTTCCTATAGCCCATTGCCATTTTTCTTTA-------CTAGGCTCTGTTCAAAATTATaaaatggggttagtttatctcttgccacctccccctcaac----acacacacacCAGGCCATGTTCCTTGTA--GTATAGTACAAGGTCA-CCACAATTTCTGATTTAGAAACAGGGAAATTATTAAGTACATCC--------AGTGTATAGATGAGAATTGTTTGGTTATACTAGTCTTCTCAGGCATTGATAACTATGACTGTTTGGGTCTACAGCCTCTTCTCTACTGTGTTCCTC--AGCCTAGCTTCGCACCTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139026110 444 + 157549271 TGA--TAATGGCTTTTTTGCTGCTTGATTTTCTTCTTTTCCCCTCATT----------------------------------TTTAAAAGCTAG--AAGTTTTTTT-AACTAAATAAACCCTAATACTGTTCTTTGTTCTGCTTTGGAGTAGCAATTCTTTCCATGCAATTAAGT-GTGGTGGTGGTCTTCCTATAGCCCATTGCCATTTTTCTTTA-------CTAGGCTCTATTCAAAATTGTAAAAT-GGGTTAGTTTATCTCTTGCCACCTCCCCCTCAACAACAACACACACACCAGGCCATGTTCCTTGTA--GTATAGTACAAGGTCAACCATAATTTGTGATTTAGAAACAGGGAAATTATTAAGTACATCC--------AATGTATAGATGAGAAGTGTTTGGTTATACTAGTCTTCTCAGGCATTGATGACTATGACTATTTGGGTCTACAGCCTCTTCTCTACTGTGTTCCTC--AGCCTAGCTTCGCACCTG
i ponAbe2.chr7             C 0 I 712
s nomLeu3.chr13             93146884 446 + 110113093 TGA--TAATGGCTTTTTTGCTGCTTGATTTTCTTCCTTTCCCCTCATT----------------------------------TTTAAAAGCTAATTAAGTTTTTTT-AATTGAATAAACCCTAATACTATTCTTTGTTCTGCTTTGGAGTAGCAATTCTTTCCATGCAATTAAGT-GTGGTGGTGGTCTTCCTATAGCCCATTGCCATTTTTCTTTA-------CTAGGCTCTATTCAAAATTATAAAATGGGGTTAGTTTATCTCTTGCCACCTCCCCCTCAACAAC-ACACACACACCAGGCCATGTTCCTCATA--GTATAGTACAAGGTCAACCACAATTTGTGATTTAGAAACAGGGAAATTATTAAGTACATCC--------AATGTATAGATGAGAATTGTTTGGTTATACTAGTCTTCTCAGGCATTGATAACTATGACTATTTGGGTCTACAGCCTCTTCTCTACTGTGTTCCTC--AGCCTAGCTTCGCACCTG
i nomLeu3.chr13            C 0 I 10
s rheMac3.chr3             181041090 444 + 198365852 TGA--TAATGGCTTTTTTGCTGCTTGATTTTCTTCTTTCCCCCTCATT----------------------------------TTTAAAAGCTAATTAAGTTTTTTT-AATTGAATAAACCCTAATACTATTCTTTGTTCTGCTTTGGAGTAGCAATTCTTTCCATGCAATTAAGT-GTGGTGGTGGTCTTCCTATAGCCCATTGCCATTTTTCTTTA-------CTAGGCTCTATTCAAAATTATAAAATGGGGTTAGTTTATCTCTTGCCACCTCCCGCTGAACAAC-ACACACACACCAGGCCATGTCCCTTGTA--GTATAGTACAAGGTCAACCACAATTTGTGATTTAGAAACAGGTAAATTATTAAGTACATCC--------AATGTACAGATGAGAATTGTTTGGTTATACTAGTCTTCTCAGGCATTGATAAC--TGACTATTTGGGTCTACAGCCTCTTCTCTACTGTGTTCCTC--AGCCTAGCTTCACAACTG
i rheMac3.chr3             C 0 I 10
s macFas5.chr3             174788873 444 + 192294377 TGA--TAATGGCTTTTTTGCTGCTTGATTTTCTTCTTTCCCCCTCATT----------------------------------TTTAAAAGCTAATTAAGTTTTTTT-AATTGAATAAACCCTAATACTATTCTTTGTTCTGCTTTGGAGTAGCAATTCTTTCCATGCAATTAAGT-GTGGTGGTGGTCTTCCTATAGCCCATTGCCATTTTTCTTTA-------CTAGGCTCTATTCAAAATTATAAAATGGGGTTAGTTTATCTCTTGCCACCTCCCGCTGAACAAC-ACACACACACCAGGCCATGTCCCTTGTA--GTATAGTACAAGGTCAACCACAATTTGTGATTTAGAAACAGGTAAATTATTAAGTACATCC--------AATGTACAGATGAGAATTGTTTGGTTATACTAGTCTTCTCAGGCATTGATAAC--TGACTATTTGGGTCTACAGCCTCTTCTCTACTGTGTTCCTC--AGCCTAGCTTCACAACTG
i macFas5.chr3             C 0 I 10
s papAnu2.chr3             163457376 443 + 180432695 TGA--TAATGgcttttttgctgcttgattttcttctttccccctcatt----------------------------------tttaaaagctaattaagttttttt-aattgaataaacCCTAATACTATTCTTTGTTCTGCTTTGGAGTAGCAATTCTTTCCATGCAATTAAGT-GTGGTGGTGGTCTTCCTATAGCCCATAGCCA-TTTTCTTTA-------CTAGGCtctattcaaaattataaaatggggTTAGTTTATCTCTTGCCACCTCCTGctgaacaac-acacacacaccaggccaTGTCCCTTGTA--GTATAGTACAAGGTCAACCACAATTTGTGATTTAGAAACAGGTAAATTATTAAGTACATCC--------AATGTACAGATGAGAATTGTTTGGTTATACTAGTCTTCTCAGGCATTGATAAC--TGACTATTTGGGTCTACAGCCTCTTCTCTACTGTGTTCCTC--AGCCTAGCTTCACAACTG
i papAnu2.chr3             C 0 I 10
s chlSab2.chr21            110485154 444 + 127223203 TGA--TAATGGCTTTTTTGCTGCTTGATTTTCTTCTTTCCCCCTCATT----------------------------------TTTAAAAGCTAATTAAGTTTTTTT-AATTGAATAAACCCTAATACTATTCTTTGTTCTGCTTTGGAGTAGCAATTCTTTCCATGCAATTAAGT-GTGGTGGTGGTCTTCCTATAGCCCACTGCCATTTTTCTTTA-------CTAGGCTCTATTCAAAATTATAAAATGGGGTTAGTTTATCTCTTGCCACCTCCCACTGAACAAC-ACATACACACCAGGCCATGTCCCTTGTA--GTATAGTACAAGGTCAACCACAATTTGTGATTTAGAAACAGGTAAATTATTAAGTACATCC--------AATGTATAGATGAGAATTGTTTGGTTATACTAGTCTTCTCAGGCATTGACAAC--TGACTATTTGGGTCTACAGCCTCTTCTCTACTGTGTTCCTC--AGCCTAGCTTCACAACTG
i chlSab2.chr21            C 0 I 10
s calJac3.chr8              23828749 449 - 128169293 TGA--TAATGGCTTTTGTGCTGCTTGATTTTCTCTTTTCCCCCTCATT----------------------------------TTAAAAAGCTAATTATGTTTTTTT-AATTGAATAAACCTTAATACTA----CTGTTTTGCTTTGGAATAGCAATTCTTTCCATGCAATTATGT-GTGGTGGTGTTCTTCCTATAATCCATTGCCATTTTTCTTTG-------CTAGACTCTACTCAAAATTATAAAATGGGGTTCATTTATCTCTTGCCTCTCTGCCCCCA------CTACATATACCAGGCCATGTCCCTTGTAATGTATAGTACAAGGTCAACCACAATTTGTGATTTAGAAATAGCTAAATGATTAAGTACATCTGATGTTCAGATGTATAGATGAGATTTGCTTGGTTATACCAGTCTTCTCAGGCATTGATAACTATGATTATTTGGGTCTGCAACCTCTTCCCTACTGTGTTCCCCAGAGCCTGGCTTCACACCTG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52166454 457 -  59632846 TGGTCTGTAGGCTTTTTTGCTGCCTTATATTCTTCTTTACCCTCCATTaaaaaaacaaacaaacaaaaaaaacaaaaacaacaacaaaaaaaaaacaaGTGTTTTTAAATTGAATAGACCATCATAGCATTCTTTGTTCTGTCTTGGAGTAGCAATTATTTCCATGCAGTTAAGTGGGGGTAAAGTGCTCTATATTGCTCATTGTCA------TTTACAAAAGTCTAGTCTCAATTCACATTTCTAAAATGGAGTTAATTTATCTCTTGCCTC-------------------------CCAGG-CATATCCATTGCA-------GTGCAAGATCAACCACAATTTGCAATTTAGAAACAGGTATATTGTTAAACATATGC--------AATGTACAGACCAGAATTCTTTAATTATACTTGTCTTCTCAGACATTGACCACTCGTACTTTTAAGGTCTATGACCTCTTCTTGACCCTGCTCCTCAGAGCCCATGTCAGCACTTG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40467020  12 + 149736546 I

a score=21608.000000
s hg38.chr7_GL383534v2_alt    104216 33 +    119183 GTGCCAGTTCCATTGGCTCTGActctggctctc-
s panTro4.chr7             143204091 33 + 161824586 GTGCCAGTTCCATTGGCTCTGACTCTGGCTCGC-
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93147340 27 + 110113093 GTGCCAGGTCCAT------TCActctggctctc-
i nomLeu3.chr13            I 10 C 0
s rheMac3.chr3             181041544 29 + 198365852 GTGCCAGAT-TATTGG---CCGCTCTGGCTCTC-
i rheMac3.chr3             I 10 C 0
s macFas5.chr3             174789327 29 + 192294377 GTGCCAGAT-TATTGG---CCGCTctggctctc-
i macFas5.chr3             I 10 C 0
s papAnu2.chr3             163457829 29 + 180432695 GTGCCAGAT-TATTGG---CCCctctggctctc-
i papAnu2.chr3             I 10 C 0
s chlSab2.chr21            110485608 29 + 127223203 GTGCCAGAT-TATTGG---Ccgctctggctctc-
i chlSab2.chr21            I 10 C 0
s calJac3.chr8              23829198 16 - 128169293 -----------------AATGGATCTGATTCTC-
i calJac3.chr8             C 0 I 39
s canFam3.chr16             52166911 17 -  59632846 --------------AG---TGGATCTGGTGCCAG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40467020 12 + 149736546 I
e ponAbe2.chr7             139026554 712 + 157549271 I

a score=17354.000000
s hg38.chr7_GL383534v2_alt    104249 13 +    119183 tggctccggctct
s panTro4.chr7             143204124 13 + 161824586 TGGCTCCGGCTCT
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93147367 13 + 110113093 tggctctggctct
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181041573 13 + 198365852 TGGCTCTCTCGCT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174789356 13 + 192294377 tggctctctcgct
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163457858 13 + 180432695 tcgctctggctct
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110485637 13 + 127223203 tggctctggctct
i chlSab2.chr21            C 0 I 40
e mm10.chr6                 40467020 12 + 149736546 I
e canFam3.chr16             52166928  0 -  59632846 C
e calJac3.chr8              23829214 39 - 128169293 I
e ponAbe2.chr7             139026554 712 + 157549271 I

a score=7106.000000
s hg38.chr7_GL383534v2_alt    104262 12 +    119183 ctgg--ctctcgct
s panTro4.chr7             143204137 12 + 161824586 CTGG--CTCTCGCT
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93147380 12 + 110113093 cttg--ctctggcc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181041586 12 + 198365852 CTGG--CTCTGGCT
i rheMac3.chr3             C 0 I 67
s papAnu2.chr3             163457871 14 + 180432695 ctggctctctggct
i papAnu2.chr3             C 0 I 2
e mm10.chr6                 40467020 12 + 149736546 I
e canFam3.chr16             52166928  0 -  59632846 C
e calJac3.chr8              23829214 39 - 128169293 I
e chlSab2.chr21            110485650 40 + 127223203 I
e macFas5.chr3             174789369  0 + 192294377 C
e ponAbe2.chr7             139026554 712 + 157549271 I

a score=728.000000
s hg38.chr7_GL383534v2_alt    104274 20 +    119183 ctcgctctcactctc--------gctct
s panTro4.chr7             143204149 14 + 161824586 CTC------ACTCTC--------GCTCT
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93147392 16 + 110113093 ccc----tcgcgctc--------tctct
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174789369 14 + 192294377 ------ctggctctg--------gctct
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163457887 22 + 180432695 ------ctggctctggctctctcgctct
i papAnu2.chr3             I 2 C 0
s canFam3.chr16             52166928 11 -  59632846 ---------ACTATT--------GCTTT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40467020 12 + 149736546 I
e calJac3.chr8              23829214 39 - 128169293 I
e chlSab2.chr21            110485650 40 + 127223203 I
e rheMac3.chr3             181041598 67 + 198365852 I
e ponAbe2.chr7             139026554 712 + 157549271 I

a score=6049.000000
s hg38.chr7_GL383534v2_alt    104294 41 +    119183 agcccgctcgggtcctctctggcctactcgtgc--------------tcgctctg
s panTro4.chr7             143204163 41 + 161824586 AGCCCGCTCGGGTCCTCTCTGGCCTACTCGCGc--------------tctctctg
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93147408 55 + 110113093 ggcctgcccgcactctctctggctctctctctctctctccctggctctctctctg
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174789383 33 + 192294377 ggcttgccag----ctctcgttctttctggctc--------------gccc----
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163457909 33 + 180432695 ggctctctgg----ctctctggctctctggctc--------------tctg----
i papAnu2.chr3             C 0 C 0
e mm10.chr6                 40467020 12 + 149736546 I
e canFam3.chr16             52166939  0 -  59632846 C
e calJac3.chr8              23829214 39 - 128169293 I
e chlSab2.chr21            110485650 40 + 127223203 I
e rheMac3.chr3             181041598 67 + 198365852 I
e ponAbe2.chr7             139026554 712 + 157549271 I

a score=7880.000000
s hg38.chr7_GL383534v2_alt    104335 33 +    119183 gctcgctttctctctctctctctcgctctctct
s panTro4.chr7             143204204  7 + 161824586 gctcgct--------------------------
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93147463 33 + 110113093 gctcgctctctctctctggctcgctctctctcc
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181041665 33 + 198365852 gctcgctctctctctcactttctggctcgcccg
i rheMac3.chr3             I 67 C 0
s macFas5.chr3             174789416 32 + 192294377 gctcgcacgcgctctcgctctctggcttgccc-
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163457942 25 + 180432695 --------gctctctggctctctggctctctcg
i papAnu2.chr3             C 0 C 0
e mm10.chr6                 40467020 12 + 149736546 I
e canFam3.chr16             52166939  0 -  59632846 C
e calJac3.chr8              23829214 39 - 128169293 I
e chlSab2.chr21            110485650 40 + 127223203 I
e ponAbe2.chr7             139026554 712 + 157549271 I

a score=51550.000000
s hg38.chr7_GL383534v2_alt    104368 102 +    119183 ctcgctctctctctc------gctctctctctcgctctctctctcgctctctctctcgctc--------tctctctcgctctctctctcgctctctcgctctctctctctctctcg
s panTro4.chr7             143204211  38 + 161824586 ----------------------------------------------------------------------ctgtctcgctttctctctggctctctc--------tctctctctgg
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93147496 100 + 110113093 ctggctctctctctctccctggctctctctctctggctctctctctctctctggctctctc--------tctgcttctctctctctctggctctctc--------tctctctctgg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181041698 106 + 198365852 ctc--gcccgctctctggcttgctcgctctctctctcactttctggctcacctgctcgcccgctctctggctctctggctctctggcttgctctctc--------gctctctcTCT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174789448  79 + 192294377 ---------------------gctcgctctctctcgcactttctggctcacccgctcgccc--------gctctctggctctctggcttgctctctc--------gctctctctct
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163457967  96 + 180432695 ctctggctctggctctg----gcttgcccgctctcgttctttctggctcgcccgctcgctc--------tctctctcgctctctggctcgcccgctc--------gctctctctct
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110485690  78 + 127223203 ----------------------ctcgcgctctctctcgctctctggctcgcccactcgctc--------tctctctcactttctggctcgcccgctc--------tctggctctct
i chlSab2.chr21            I 40 C 0
e mm10.chr6                 40467020  12 + 149736546 I
e canFam3.chr16             52166939   0 -  59632846 C
e calJac3.chr8              23829214  39 - 128169293 I
e ponAbe2.chr7             139026554 712 + 157549271 I

a score=-1272.000000
s hg38.chr7_GL383534v2_alt    104470 21 +    119183 ctctcgctct----------------------------------ctctctggctc
s panTro4.chr7             143204249 21 + 161824586 ctctctctct----------------------------------ctctctggctc
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93147596 21 + 110113093 ctctctctct----------------------------------ctctctggctc
i nomLeu3.chr13            C 0 I 340
s rheMac3.chr3             181041804 43 + 198365852 CTCTCTACAG-TAGCAGGATGTCACCAA-----------TCTGGCTCTCTGGCTT
i rheMac3.chr3             C 0 I 4
s macFas5.chr3             174789527 27 + 192294377 ctctcTACAG-TAGCAGGATGTCACCAA---------------------------
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163458063 53 + 180432695 cactttctggctcgcgcgc--tcgccagctctctggctctctggctctctggctt
i papAnu2.chr3             C 0 I 4
s chlSab2.chr21            110485768 21 + 127223203 ggctctctgg----------------------------------ctctctggctt
i chlSab2.chr21            C 0 I 4
s canFam3.chr16             52166939 18 -  59632846 CTCTCCCTCT----------------------------------CTCTCTGG---
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40467020 12 + 149736546 I
e calJac3.chr8              23829214 39 - 128169293 I
e ponAbe2.chr7             139026554 712 + 157549271 I

a score=12122.000000
s hg38.chr7_GL383534v2_alt    104491 24 +    119183 tctctctgtctctctGGATCTGCA
s panTro4.chr7             143204270 24 + 161824586 tctctctgtctctctggctctGCA
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93147957 24 + 110113093 TCTCTCTCTCTCTCTGGCTCTGCA
i nomLeu3.chr13            I 340 C 0
s rheMac3.chr3             181041851 24 + 198365852 TCTCGCTCGCTCTCCCTCTCTACA
i rheMac3.chr3             I 4 C 0
s papAnu2.chr3             163458120 22 + 180432695 tctcgctcgctct--ctctctacA
i papAnu2.chr3             I 4 C 0
s chlSab2.chr21            110485793 22 + 127223203 tctggcttgctct--ctctctACA
i chlSab2.chr21            I 4 C 0
s canFam3.chr16             52166957 11 -  59632846 -------------GGGACTCCAGA
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40467020 12 + 149736546 I
e calJac3.chr8              23829214 39 - 128169293 I
e macFas5.chr3             174789554  0 + 192294377 C
e ponAbe2.chr7             139026554 712 + 157549271 I

a score=51380.000000
s hg38.chr7_GL383534v2_alt    104515 27 +    119183 GCAGCAGGATGTCACCAAA--ATAGTATG
s panTro4.chr7             143204294 27 + 161824586 ATAGCAGGATGTCACCAAA--ATAGTATG
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93147981 27 + 110113093 ATAGCAGGATGTCACCAAA--ATAGTATG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181041875 27 + 198365852 GTAGCAGGATGTCACCAGA--ATAGTATG
i rheMac3.chr3             C 0 I 4
s macFas5.chr3             174789554  9 + 192294377 ------------------A--ATAGTATG
i macFas5.chr3             C 0 I 4
s papAnu2.chr3             163458142 29 + 180432695 GGAGCAGGATGTCACCAAAATATAGTATG
i papAnu2.chr3             C 0 I 4
s chlSab2.chr21            110485815 27 + 127223203 GTAGCAGGATGTCACCAAA--ATAGTATG
i chlSab2.chr21            C 0 I 4
s calJac3.chr8              23829253 27 - 128169293 GTAGCAGGATGTCACCAAA--ATCGTATG
i calJac3.chr8             I 39 I 4
s canFam3.chr16             52166968 27 -  59632846 GTACCACAAAGTTACTAAA--CCAGCAGG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40467020 12 + 149736546 I
e ponAbe2.chr7             139026554 712 + 157549271 I

a score=1596805.000000
s hg38.chr7_GL383534v2_alt    104542 487 +    119183 TATCTGCATAGATACTACTGAGTGT--GAGGGACTGCGTCTTCACTGGCCTTAGCGTTTCATCCCTTCCATTTCAGTTAGACGC------TTATTTCTT------ACCTCAGT-----------------------AAGTTTTGTTTTTGCACAGAGATCATTATATAACTTGGAAACTAATTATCACA------ATTATT--TTATTAACATCATTGGGCTGGTAACATTAAAGAAGTTAAATTAAAATACTTTAGA----AAATATGTTACTTCTCTATGGATG---------------TATTCTAAATGTC-------AACACTGACATTAAGGTACCAACAGATACTCTTGAGATCTAGAGGAACACTATTGCGCTCTACTGGTCTAATAAGCTCTAACACATGTACCAGTTTAGAGAATCCATTTACTGAAAGTTGTAGAAAGATGAATATTGAAAGGTA----TGACCCTTTCAGCCTGAACGACTAAGGCTTTTTATCTCTAGATGAACCATATTTTCAATCTTGAATTAGATAAAAATTGTCAGGTTTTTCT-TT-
s panTro4.chr7             143204321 487 + 161824586 TATCTGCATAGATACTACTGAGTGT--GAGGGACTGGGTCTTCACTGGCCTTGGCGTTTCATCCCTTCCATTTCAGTTAGACGC------TTATTTCTT------ACCTCAGT-----------------------AAGTTTTGTTTTTGCACAGAGATCATTATATAACTTGGAAACTAATTATCACA------ATTATT--TTATTAACATCATTGGGCTGGTAACATTAAAGAAGTTAAATTAAAATACTTTAGA----AAATATGTTACTTCTCTATGGATG---------------TATTCTAAATGTC-------AACACTGACATTAAGGTACCAACAGATACTCTTGAGATCTAGAGGAACACTATTGTGCTCTACTGGTCTAATAAGCTCTAACACATGTACCAGTTTAGAGAATCCATTTACTGAAAGTTGTAGAAAGATGAATATTGAAAGGTA----TGAACCTTTCAGCCTGAATGACTAAGGCTTTTTATCTCTAGATGAACCATATTTTCAATCTTGAATTAGATAAAAATTGTCAGGTTTTTCT-TT-
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139027266 485 + 157549271 TATCTGCATAGATACTACTGAGTGT--GAGGGACTGGGTCTTCACTGGCCTTGGCGTTTCATCCCTTCCATTTCAGTGAGACGC------TTATTTCTT------ACCTCAGT-----------------------AAGTTTTGTTTTTGCACAGAGATCATTATATAACTTGGAAACTAATTATCACA------ATTATT--TTATTAACATCATTGGGCTGGTAACATTAAAGAAGTTAAATTAAAATACTTTAGA----AAATATGTTACTTCTCTATGGATG---------------TATTCTAAATGTC-------AACACTGACATTAAGGTACCAACAGATAATCTTGAGATCTAGAGGAACACTATTGCGCTCTACTGGTCTAATAAGCTCTAACACATGGACCAGTTTAGAGAGGCCATTTACTGAAAGTTGTAGAAAGGTGAATATTGAAAGGTA----TGAACCTTTCAGCCTGAACGACTAAGGCTTTTTATCTCTAGATGAACCATATTTTCAATCTTGAATTAGATAAAAATTGTCAGGTTTTTCT----
i ponAbe2.chr7             I 712 C 0
s nomLeu3.chr13             93148008 488 + 110113093 TATCTGCATAGATACTACTGAGTGT--GAGGGACTGGGTCTTCACTGGCCTTGGCGTTTCATCCCTTCCATTTCAGTTAGAGGC------TTATTTCTT------ACCTCAGT-----------------------AAGTTTTGTTTTTGCACAGAGATCATTATATAACTTGGAAACTAATTATCCCA------ATTATT--TCATTAACATCATTGGGCTGGTAACATTAAAGAAGTTAAATTAAAATACTTTAGA----AAATATGTTACTTCTCTATGGATG---------------TATTCTAAATGTC-------AACACTCACATTAAGGTACCAACAGATAATCTTGAGATCTAGAGGAACACTATTGCGCTCTACTGGTCTAATAAGCTCTAACACATGTACCAGTTTAGGGAGGCCATTTACTGAAAGTTGTAGAAAGATGAATATTGAAAGGTA----TGAACCTTTCAGCCTGAACAACTAAGGCTTTTTATCTCTAGATGAACCATATTTTCAATCTTGAATCAGATAAAAATTGACAGGTTTTTGTTTT-
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181041906 483 + 198365852 TATCTGCATAGATACTACTGAGTGT--GAGGGACTGGGTCTTCACTGGCTTTGGCGTTTCATCCCTTCCATTTCAGTTAGATGC------TTATTCCTT------ACCTCAGT-----------------------AAGTTTTGTTTTTGCACAGAGATCATTATGTAACTTGGAAACTAATTATCACA------ATTATT--TCATTAACATCATTGGGCTGGTAACATTAAAGAAGTTAAATTAAAATACTTTAGA----AAATATGTTACTTCTCTAAGGATG---------------TATTCTAAATGTC-------AACACTGACATTAAGGTACCAACAGATAATCTTGAGATCTAGAGGAATACTATTGTGCTCCACTGGTC---TAAGCTCTGACACACATACCACTTTAGAGAGGCCATTTACTGAAAGTTGTAGAAAGATGAATATTGAAAGATA----TGAACCTTTCAGCCTGAACAACTAAGGCTTTTTATCTCTAAATGAACCATATTTTCAATCTTGAATTGCAGAAAAATTGTCAGGTTGTTTT--T-
i rheMac3.chr3             I 4 C 0
s macFas5.chr3             174789567 483 + 192294377 TATCTGCATAGATACTACTGAGTGT--GAGGGACTGGGTCTTCACTGGCTTTGGCGTTTCATCCCTTCCATTTCAGTTAGATGC------TTATTCCTT------ACCTCAGT-----------------------AAGTTTTGTTTTTGCACAGAGATCATTATGTAACTTGGAAACTAATTATCACA------ATTATT--TCATTAACATCATTGGGCTGGTAACATTAAAGAAGTTAAATTAAAATACTTTAGA----AAATATGTTACTTCTCTAAGGATG---------------TATTCTAAATGTC-------AACACTGACATTAAGGTACCAACAGATAATCTTGAGATCTAGAGGAATACTATTGTGCTCCACTGGTC---TAAGCTCTGACACACATACCACTTTAGAGAGGCCATTTACTGAAAGTTGTAGAAAGATGAATATTGAAAGATA----TGAACCTTTCAGCCTGAACAACTAAGGCTTTTTATCTCTAAATGAACCATATTTTCAATCTTGAATTGCAGAAAAATTGTCAGGTTGTTTT--T-
i macFas5.chr3             I 4 C 0
s papAnu2.chr3             163458175 483 + 180432695 TATCTGCATAGATACTACTGAGTGT--GAGGGACTGGGTCTTCACTGGCCTTGGCGTTTCATCCCTTCCATTTCAGTTAGATGC------TTATTCCTT------ACCTCAGT-----------------------AAGTTTGGTTTTTGCACAGAGATCATTATGTAACTTGGAAACTAATTAtcaca------attatt--tcattaatatcatTGGGCTGGTAACATTAAAGaagttaaattaaaatactttaga----aaatatGTTACTTCTCTAAGGATG---------------TATTCTAAATGTC-------AACACTGACATTAAGGTACCAACAGATAATCTTGAGATCTAGAGGAATACTATTGTGCTCCACTGGTC---TAAGCTCTGACACACATACCACTTTAGAGAGGCCATTTACTGAAAGTTGTAGAAAGATGAATATTGAAAGATA----TGAACCTTTCAGCCTGAACAACTAAGGCTTTTTATCTCTAAATGAACCATATTTTCAATCTTGAATTGCAGAAAAATTGTCaggttgtttt--t-
i papAnu2.chr3             I 4 C 0
s chlSab2.chr21            110485846 478 + 127223203 TATCTGCATAGATACTACTGAGTGT--GAGGGACTGGGTCTTCACTGGCCTTGGCATTTCATCCCTTTCATTTCAGTTTGATGC------TTATTCCTT------ACCTCAGT-----------------------AAGTTTTGTTTTTGCACAGAGATCATTATGTAACTTGGAAACTAATTATCACA------ATTATT--TCATTAACATCATTGGGCTGGTAACATTAAAGAAG-----TTAAAATACTTTAGA----AAATATGTTACTTCTCTATGGATG---------------TATTCTAAATGTC-------AACACTGACATTAAGGTACCAACAGATAATCTTGAGATCTAGAGGAATACTATTGTGCTCCACTGGTC---TAAGCTCTGACACACATACCACTTTAGAGAGGTCATTTACTCAAGGTTGTAGAAAGATGAATATTGAAAGATA----TGAACCTTTCAGCATGAACAACTAAGGCTTTTTATCTCTAGATGAACCATATTTTCAATCTTGAATTGCAGAAAAATTGTCAGGTTGTTTT--T-
i chlSab2.chr21            I 4 C 0
s calJac3.chr8              23829284 452 - 128169293 TATCTGCATAGATGCTGTTGAGTGT--GAGGGACTGGGTCTTCACTGGCCTTGGCATTTCATCCCTTCCATTTCAGTTAGATGC------TTATTCCTTATCTCAATCTCAGT-----------------------AAGTTTTATTTTTGTACAGAGATCATGATATAACTCAGTAACTAATTATCACA------ATTATT--TCATTAACATCATTGGGCTGGTAACATTAAAGAAGGCAAATT-TAATACTTTAGA----AAATATGTT---------------------------------------------------------ACATTAAGGTACCAAAAGATAGTCTTGAGATCTAGAGAAATACTACTGAGCTCTACTGGTC---TAAACTCTAACACATGTACCAATTTAGAGAGGCCATTTATTGAAAGCTGTAGAAAGATGAATATTGAAAGATA----TGAACCTTTCAGCCTGAACAACTATGGCTTTATATCTCTAGATGAACCATATTTTCAATTTTGAATTGCATAAAAATTGTCAAG-TGTGTT--A-
i calJac3.chr8             I 4 C 0
s canFam3.chr16             52166995 546 -  59632846 TGGCTACATAGACACTGTTGAGTGTGAGAGGGACTGAGTCTTCACTGGGCTGAGGATTTCATCCCTTTCAGTTCAGCTGGAAGCTGAAGTTGACCCCTT------GCCTCTGTAAGATGCTCCATCCTCAGTCCTAAAGTTCTGTTTTTGCACAGAGATCATAAGGTAACCTAGGAACTAGTTATCAAATGTCATACTATCAAATATTAACATCATTGGACTTACAATATTAAACAAGTTGAACTTAAATATTTTAGGATATAAATGTGCTACttttttttaaataataaatttGTGCTACTTTTCTATAGATCTTAAACATACACTGATGTTAAGTTGCCAACAGATAATCTTGAGACTTAAAGGAATGATATTGTGCTTTAT--------TAAACTCTTACATATGTATCAGTTTATAGATGCCA-TTATCTAAAGCTGTATAATGATGAACATTAAAAGATAAAGGTCAACATTTCAGCCTGAAAAATTAAGCTTTTTTATCTCTGTATGAACCATAATTTCAATCCTGAATTACATAAAAA-TGTCAAGTTGattt--tt
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40467020  12 + 149736546 I

a score=561144.000000
s hg38.chr7_GL383534v2_alt    105029 163 +    119183 ------AAATTA---AAAAATAGCCATAATAACTACTAAGTAT-------TACTAAAATTGCTTTC-AAACCATTCTAAAATATATGC---AAGTAATCAGTGTAGGTAATAAGTGCTGCAATTTTTCAGTAGTTA---TGAGGCTTTAGGTAAGCTGATTTAAAATCAAAGTAAAAACCTGATTA
s panTro4.chr7             143204808 163 + 161824586 ------AAATTA---AAAAATAGCCATAATAACTACTAAGTAT-------TGCTAAAATTGCTTTC-AAACCATTCTAAAATATATGC---AAGTAATCAGTGTAGGTAATAAGTGCTGCAATTTTTCAGCAGTTA---TGAGGCTTTAGGTAAGCTGATTTAAAATCAAAGTAAAAACCTGATTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139027751 160 + 157549271 ---------TTA---AAAAATAGCCATAAAAACTACTAAGTAT-------TGCTAAAATTGCTTTC-AAACCATTCTAAAATATATGC---AAGTAATCAGTGTAGGTAATAAGTGCTGCAATTTTTCAGCAGTTA---TGAGGCTTTAGAGAAGCTGATTTAAAATCAAAGTAAAAACCTGATTA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93148496 160 + 110113093 ------AAATTA---AAAAATAGCCATAATA---ACTAAGTAT-------TGCTAAAATTGCTTTC-AAACCATTCTAAAATATATGC---AAGTAATCAGTGTAGGTAATAAGTGCTGCAATTTTTCAGCAGTTA---TGAGGCTTTAGAGAAGCTGATTTAAAATCAAAGTAAAAACCTGATTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181042389 160 + 198365852 ------AAATTA---------AGCCATAATAACTACTAAGTAT-------TGCTAAAATTGCTTTC-AAACCATTCTAAAATATATGC---AAGTAATCAGTGTAGGTAATAAGTGCTGCAATTTTTCAACAGTTATTGTGAGGCTTTAGAGAAGCTGATTTAAAATCAAAGTAAAAACCTGATTA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174790050 160 + 192294377 ------AAATTA---------AGCCATAATAACTACTAAGTAT-------TGCTAAAATTGCTTTC-AAACCATTCTAAAATATATGC---AAGTAATCAGTGTAGGTAATAAGTGCTGCAATTTTTCAACAGTTATTATGAGGCTTTAGAGAAGCTGATTTCAAATCAAAGTAAAAACCTGATTA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163458658 160 + 180432695 ------aaatta---------agccATAATAACTACTAAGTAT-------TGCTAAAATTGCTTTG-AAACCATTCTAAAATATATGC---AAGTAATCAGTGTAGGTAATAAGTGCTGCAATTTTTCAACAGTTATTATGAGGCTTTAGAGAAGCTGatttaaaatcaaagtaaaaacctgatta
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110486324 160 + 127223203 ------AAATTA---------AGCCATAATAACTACTAAGTAT-------TGCTAAAATTGCTTTC-AAACCATTCTAAAATATATGC---AAGTAATCAGTGTAGGTAATAAGTGCTGCAATTTTTCAACAGTTATTATGAGGTTTTAGAGAAGCTGATTTAAAATCAAAGTAAAAACCTGATTA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23829736 165 - 128169293 ------AGTTTA---AAAAGTAGCCATAATAACTACTAAGTAT-------TGTT-AAATTGCTTTT-GAGCCATTCTAATATATACGC---AAGTAATCAGTGTAGGTAGTAAGTGCTGTAATTTTTCAGCAGTCATCATGAGGCTTTAGAAAAACTAATTTAAAGTCAAAGTAAAAATCTGATTA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40467032 165 + 149736546 ------aaattaa-gaaaaatatCCCTACTAACTACAAAGTAT-------TTCTAAAGTTGCTTTCAaaaacaaaacaaaacaaaacCCTTAAGCCCTTAGCATAGT--AGAAGGATTATAACCTCCTCACACTCACTATGAGGCTTTATGAAAAATGATTTG-----AAAGTGAGAACTTGATTA
i mm10.chr6                I 12 I 399
s canFam3.chr16             52167541 181 -  59632846 aaaaaaaatttaacaaaaaataGCTCTAATAACTAATAACTATGAAGTGCTGCTAAAATTGCTTTT-GAGCCATTTTAAAGTAGTTGC----TGTAATCCATTTAGATAGTAAGTGCTATAATTTTCCACCCGTTATTATGAGGCTTGAGAAAAACTGATTTAGAAACAAAGTGAAAATTGCATTG
i canFam3.chr16            C 0 C 0

a score=105063.000000
s hg38.chr7_GL383534v2_alt    105192 34 +    119183 ACATTTCTTT-AAAAATGGATAATTTACAGCAAAA
s panTro4.chr7             143204971 34 + 161824586 ACATTTCTTT-AAAAATGGATAATTTACAGCAAAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139027911 34 + 157549271 AAATTTCTTT-AAAAATGGATAATTTACAGCAAAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93148656 34 + 110113093 AAATTTCTTT-AAAAATGGATAATTTACAGCAAAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181042549 34 + 198365852 AAATTTATTT-AAAAGTGGATAATTTACAGCAAAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174790210 34 + 192294377 AAATTTATTT-AAAAGTGGATAATTTACAGCAAAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163458818 34 + 180432695 aaatgtcttt-aaaaatggataatttaCAGCAAAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110486484 34 + 127223203 AAATTTCTTT-AAAAATGGATAATTTACAGCAAAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23829901 35 - 128169293 AAATTTCTTTAAAAAATGGATAATTTACAGCAAAA
i calJac3.chr8             C 0 I 4273
s canFam3.chr16             52167722 32 -  59632846 AAATTTCC---AAAAAATGTTTTTATATAGCAATG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40467197 399 + 149736546 I

a score=6129.000000
s hg38.chr7_GL383534v2_alt    105226 3 +    119183 -CTG
s panTro4.chr7             143205005 3 + 161824586 -CTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139027945 3 + 157549271 -CTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93148690 3 + 110113093 -CTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181042583 3 + 198365852 -CTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174790244 3 + 192294377 -CTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163458852 3 + 180432695 -CTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110486518 3 + 127223203 -CTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23834209 3 - 128169293 -CTG
i calJac3.chr8             I 4273 C 0
s canFam3.chr16             52167754 3 -  59632846 ACA-
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40467197 399 + 149736546 I

a score=588609.000000
s hg38.chr7_GL383534v2_alt    105229 173 +    119183 TCCAAGGCTTC---CTATTTATGATAAAGTATTGCCAGTCTTGGTCTCTACCAATGGATGCC--TATAGCTGGAACCTTTT-TA-------------------------------ATTTAGGGAG--A-------------------------------AACAAGTCAGGCCAAAGGTGAC-------TTTGCACCCCTGGGCATTTATGAT--ACACATTTCTTTCTCATTCATCTTTGCAAATGATAAAA
s panTro4.chr7             143205008 172 + 161824586 TCCAAGGCTTC---CTATTTATGATAAAGTATTGCCAGTCTTGGTCTCTACCAATGGATGCC--TATAGCTGGAACCTTTT-TA-------------------------------ATTTAGGGAG--A-------------------------------AACAAGTCAGGCCAAAGGTGAC-------TTTGCACCCCTGG-CATTTATGAT--ACACATTTCTTTCTCATTCATCTTTGCAAATGATAAAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139027948 173 + 157549271 TCCAAGGCTTC---CTATTTATGATAAAGTATTGCCAGTCTTGGTCTCTACCAATGGATGCC--TATAGCTGAAACCTTTT-TA-------------------------------ATTTAGGGAG--A-------------------------------AATAAGTCAGGCCAAAGATGAC-------TTTGCACCCCTGGGCATTTATGAT--ACACATTTCTTTCTCATTTGTCTTTGCAAATGATAAAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93148693 173 + 110113093 TCCAAGGCTTC---CTATTTATGATAAAGTATTGCCAGTCTTGGTCTCTACCAATGGATGCC--TATAGCTGGAACCTTTT-TA-------------------------------ATTTAGGGAG--A-------------------------------AATAAGTCAGGCCAAAGGTGAC-------TTTGCACCCCTGGGCATTTATGAT--ACACATTTCTTTCTCATTCATCTTTGCAAATGATAAAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181042586 173 + 198365852 TCCAAGGCTTC---CTATTTATGATAAAGCATTGCCAGTCTTCATCTCTACCAATGGATGCC--TATAGCTGGAACCTTTT-TA-------------------------------ATTCAGGGAG--A-------------------------------AATAAGTCAGGCCAAAGGTGAT-------TTTGCACCCCTGGGCATTTATGATA-ACGCACTTCTTTCTCATTCATCTTTGCAAGTGAT-AAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174790247 173 + 192294377 TCCAAGGCTTC---CTATTTATGATAAAGCATTGCCAGTCTTCATCTCTACCAATGGATGCC--TATAGCTGGAACCTTTT-TA-------------------------------ATTCAGGGAG--A-------------------------------AATAAGTCAGGCCAAAGGTGAT-------TTTGCACCCCTGGGCATTTATGATA-ACACACTTCTTTCTCATTCATCTTTGCAAGTGAT-AAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163458855 172 + 180432695 TCCAAGGCTTC---CTATTTATGATAAAGCATTGCCAGTCTTCGTCTCTACCAATGGATGCC--CATAGCTGGAACCTTTT-TA-------------------------------ATTCAGGGAG--A-------------------------------AATAAGTCAGGCCAAAGGTGAT-------TTTGCACCCCTGGGCATTTATGAT--ACACACTTCTTTCTCATTCATCTTTGCAAGTGAT-AAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110486521 172 + 127223203 TCCAAGGCTTC---CTATTTATGATAAAGCATTGCCAGTCTTCGTCTCTACCAATGGATGCC--TATAGCTGGAACCATTT-TA-------------------------------ATTCAGGGAG--A-------------------------------AATAAGTCAGGCCAAAGGGGAT-------TTTGTACCCCTGGGCATTTATGAT--ACACACTTCTTTCTCATTCATCTTTGCAAGTGAT-AAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23834212 171 - 128169293 TCCAAAGCTTT---CTATTTATGATAAAGCATTGACAGTCCTGGTCTCTACAAATGGATTCG--CATAGCTGTAAGCCTTT-TA-------------------------------ATTCGGGGAG--A-------------------------------AATAAATCAGGCCAAAGGTGAC--------TTGCACCCCTGGGCATATATTAT--ATATACTTCTTTCTCATTCATCTTTGCAAATGAT-AAA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40467596 219 + 149736546 TCCAAAACTTT---CTGTTTATGATAAATTATTGCCA-----------------------TC--CATAGCTGGAACTTTAA-Tacacacacacacacacacacacacacacacacacacagagag--agagagagagagagagagagagagagagagagaggagagaAGGCCAAAGGTAACAATGTACTTTGCACTCCTGGGTATAGATAATA-ATATGGTTCTTCTTCAGTCAG-TTTGGAAAGGTTAAAA
i mm10.chr6                I 399 I 540
s canFam3.chr16             52167757 182 -  59632846 TAGGAAGATTTGGACAATCTGTGATAAAGCATTGCCAACACTGGTCTCTACCACTTAATGCCTATATAGCTAAGACTTTTTCTA-------------------------------ATTTAGAGGGGAA-------------------------------AAAAGGCAAGGCCAAAGATAAC-------TTTGTGGCCCTGGGCATCTATGACAGATACTTCTCTTTCTCAACTACCTTTGCAAAGGAT-GAA
i canFam3.chr16            C 0 C 0

a score=42098.000000
s hg38.chr7_GL383534v2_alt    105402 11 +    119183 AGCCCTGTGTC
s panTro4.chr7             143205180 11 + 161824586 AGCCCTGTGTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139028121 11 + 157549271 AGCCCTGTGTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93148866 11 + 110113093 AGCCCTGTGTC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181042759 11 + 198365852 AGCCCTGTGTC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174790420 11 + 192294377 AGCCCTGTGTC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163459027 11 + 180432695 AGCCCTGTGTC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110486693 11 + 127223203 AGCCCTGTGTC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23834383 11 - 128169293 AGCCCTGAGTC
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52167939 11 -  59632846 AGCCCTGAATT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40467815 540 + 149736546 I

a score=388186.000000
s hg38.chr7_GL383534v2_alt    105413 102 +    119183 AGTATACTACTGCCAGG---CATTAAAGCTGATTAAAGCCATAATGCTAC---CTGTCACCACTTCACAGCATTGGGAAGGCCATCTCTGGGTCCATGGATGAACTAC
s panTro4.chr7             143205191 102 + 161824586 AGTATACTACTGCCAGG---CATTAAAGCTGATTAAAGCCATAATGCTAC---CTGTCACCACTTCACAGCATTGGGAAGGCCATCTCTGGGTCCATGGATGAACTAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139028132 102 + 157549271 AGTCTACTACTGCCAGG---CATTAAAGCTGATTAAAGCCATAATGCTAC---CTGTCACCACTTCACAGCATTGGAAAGGCCATCTCTGGGTCCATGGATGAACTAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93148877 102 + 110113093 AGTCTACTACTGCCAGG---CATTAAAGCTGATTAAAGCCATAATGCTAC---CTGTCACCACTTCACAGCATTGGGAAGGCCATCTCTGGGTCCATGGATGAACTAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181042770 102 + 198365852 AGTCTACTACTGCCAGG---CATTAAAACTGATTAAAGCCATAATGTTAC---CTGTCACCTCTTCACAGCATTGGGAAGGCCGTCTCTGGGCCCATGGATGAACTAC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174790431 102 + 192294377 AGTCTACTACTGCCAGG---CATTAAAACTGATTAAAGCCATAATGCTAC---CTGTCACCTCTTCACAGCATTGGGAAGGCCGTCTCTGGGCCCATGGATGAACTAC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163459038 102 + 180432695 AGTCTACTACTGCCAGG---CATTAAAACTGATTAAAGCCATAATGCTAC---CTGTCACCACTTCACAGCATTGGGAAGGCCGTCTCTGGGCCCATGGATGAACTAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110486704 102 + 127223203 AGTCTACTACTGCCAGG---CATTAAAACTGATTAAAGCCATAATGCTAC---CTGTCACCACTTCACAGCATTGGGAAGGCCGTCTCTGGGCCCATGGATGAACTAC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23834394  92 - 128169293 AGTCCACTATTGCCAGG---CATTAAAGCTGATTAGAGCCATAATCCTAC---CTGTCACTACTT--CTGTATTGGGAAGGTTCTCTC--------TGGATGAACTAC
i calJac3.chr8             C 0 I 21
s mm10.chr6                 40468355  96 + 149736546 AGTCTACTACTATTAGA---GATTCAAGCTGAGCATAGCTCCAGTGCCACAGGCTGCCATCACTTTTC---ACTGGGAAGGCTGT------GTCCACAGGTGAACTAC
i mm10.chr6                I 540 I 466
s canFam3.chr16             52167950 105 -  59632846 ATTCCACTACTGCCAGGAGTAATGGTAGCTGATTAAAGTCATATTGCTGT---CTGTCAGTACTTCTCAGCATCAAGAAGGCCCTTTCTGGGTCCATGAATGAACTAC
i canFam3.chr16            C 0 C 0

a score=11678.000000
s hg38.chr7_GL383534v2_alt    105515 5 +    119183 ACAAA
s panTro4.chr7             143205293 5 + 161824586 ACAAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139028234 5 + 157549271 ACAAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93148979 5 + 110113093 AGAAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181042872 5 + 198365852 AGAAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174790533 5 + 192294377 AGAAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163459140 5 + 180432695 Agaaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110486806 5 + 127223203 AGAAA
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52168055 5 -  59632846 AGAGA
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40468451 466 + 149736546 I
e calJac3.chr8              23834486 21 - 128169293 I

a score=36282.000000
s hg38.chr7_GL383534v2_alt    105520 16 +    119183 GTGTGTTTATGTGTAT
s panTro4.chr7             143205298 16 + 161824586 GTGTGTTTATGTGTAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139028239 16 + 157549271 GTGTGTGTATGTGTAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93148984 12 + 110113093 GGG----TATGTGTAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181042877 16 + 198365852 GTATGTGTATGTGTAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174790538 16 + 192294377 GTATGTGTATGTGTAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163459145 16 + 180432695 gtatgtgtatgtgtat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110486811 16 + 127223203 GTATGTGTATGTGTAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23834507 16 - 128169293 gtgtgtgtgtgtgtgt
i calJac3.chr8             I 21 C 0
s canFam3.chr16             52168060  4 -  59632846 ------------GTCT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40468451 466 + 149736546 I

a score=484800.000000
s hg38.chr7_GL383534v2_alt    105536 161 +    119183 CCTATGGAGAGGTTTCAGGGCTTCCTCATCAAAAT------GCAAAATCTAGGTTTCTGAAAG-GGTATCTCTGATACAAAAATACATTGGAGTCACTATTCTAAGTCCTCGATTAAAAAAATAA-------------------TAATTTTAGGGCTCTTTGAGCATCCTTCTGGGTTCTTCCCAGA
s panTro4.chr7             143205314 161 + 161824586 CCTATGGAGAGGTTTCAGGGCTTCCTCATCAAAAT------GCAAAATCTAGGTTTCTGAAAG-GGTATCTCTGATACAAAAATACATTGGAGTCACTATTCTAAGTCCTCGattaaaaaaataa-------------------taattttaGGGCTCTTTGAGCATCCTTCTGGGTTCTTCCCAGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139028255 158 + 157549271 CCTATGGAGAGGTTTCAGGGCTTCCTCGTCAAAAT------GCAAAATCTAGGTTTCTGAAGG-GGTATCTCTGATACAAAAATATATTGGAGTCACTATTCCAAGTCCTCAATTAAAAA---AA-------------------TAATTTTAGGGCTCTTTGAGCATCCTTCTGGATTCTTCCCAGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93148996 157 + 110113093 CCTATGGAGAGGTTTCAGGGCTTCCTCATCAAAAT------GCAAAATTTAGGTTTCTGAAGG-GGTATCTCTGATACAAAAATATATTGGAATCACTATTCTAAGTCCTCGATTAAAA----AA-------------------TAATTTTAAGGCTCTTTGAGTATTCTTCTGGATTCTTCCTAGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181042893 157 + 198365852 CCTATGGAGAGGTTTCAGGGCTTCCTCATCAAAAT------GTGAAATTTAGGTTTCTGAAGG-GGTATCTCTGATACAAAAATATATTGGAATCACTGTTCTAAGTCCTCGATTAAAA----AG-------------------AAATTTTATGGCTCTGTGAGCATCCTTCTGGACTCTTCCCAGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174790554 157 + 192294377 CCTATGGAGAGGTTTCAGGGCTTCCTCATCAAAAT------GTGAAATTTAGGTTTCTGAAGG-GGTATCTCTGATATAAAAATATATTGGAATCACTGTTCTAAGTCCTCGATTAAAA----AG-------------------AAATTTTATGGCTCTGTGAGCATCCTTCTGGACTCTTCCCAGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163459161 157 + 180432695 cctATGGAGAGGTTTCAGGGCTTCCTCATCAAAAT------GTGAAATTTAGGTTTCTGAAGG-GGTATCTCTGATACAAAAATATATTGGAATCACTGTTCTAAGTCCTcgattaaaa----ag-------------------aaattttatggcTCTGTGAGCATCCTTCTGGACTCTTCCCAGA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110486827 157 + 127223203 CCTATGGAGAGGTTTCAGGGCTTCCTCATCAAAAT------GTGAAATTTAGGTTTCTGAAGG-GGTATCTCTGATACAAAAATATATTGGAATCACTATTCTAAGTCCTCGATTAAAA----AG-------------------AAATTTTATGGCTCTGCAAGCATCCTTCTGGACTCTTCCCAGA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23834523 152 - 128169293 CCTATGGAGAGGTTTCAGGGCTTCCTCATCAAAAT------GCAAAATTTAGGTTTCTGAAAA-GGAATCTCCGATACAAAACTACATTGGAGTCACTATTCTAAGTCCTC-----AAA----AA-------------------AATTTTTAGGCCTCTTTGAGCATCCTTCTAGATTCTTCCCAGA
i calJac3.chr8             C 0 I 3
s mm10.chr6                 40468917 139 + 149736546 CCTATGGAAAGGGTTCTGGGTTTCCCTATAATGACATTGGAGCATATTATAGATTCTT-------GTATCTCTA--ACAAAAAT---TTTGAGCCTTTTTTTT---TCCCCCAGTGAAA--------------------------ATTTTTTTGGTTCCTCAA----CATTTTGG---CTTACTTGA
i mm10.chr6                I 466 C 0
s canFam3.chr16             52168064 148 -  59632846 ---------------------------ACAATTAT------GCAAATTGGAGATTCTTGAAAGAGGCATCTCTATTACAAAAATCCATTTCAGCCACTCTTCCATGTCTCTGATTCTTT----TGTTGTTTGTTTTTAGTCTTCTAATTTCAGGCTTATTTGAGTATCCTTCTGGGTTCTTCCTA--
i canFam3.chr16            C 0 C 0

a score=1107543.000000
s hg38.chr7_GL383534v2_alt    105697 469 +    119183 AATAAGAATGCTTATTTGAGCATCCCTTCTGGATTCTTATTTCCATACCCTGGCCTGTGGCCTGGGCCCTACT--AGCCTGTCCTTGTTTTAAAGTAT-ACTGTGAACTGGATATTC----ACAAGTTCCTTGACCTCTAAGAGCTCACAGTTAACAGGAGGGATGAGGTACCTTTGTGATCATTT--GTTATAAGAT-GGACTGAGTGAGGAAAGAAAATGAAATGGGAGAACAGAAAGGAAGGACCGTTTGAGTGAAGAA-GTCTGAAAGTGTGTGAGGGGAGTGCAGTTCAGATCC--------TGAGGATG------------GAGCAATGCA--ACAGAAGCATTTGTTGTGTTAGG-AAGAGGGATCCATTTGATAACAGAAGAAAATGCTTTA-----ATT------TCTCCATGACATTT----------------------------------------TACATC-AAAAAAC--------------TGTGTACATTTTATCATGC-----------TTTTCT---------------------------------TTGTCAAAGAAAAAACAA------------------------------CTGAAGTAGCAGCAC----------------------TGTGACTC---------TCTCCAG
s panTro4.chr7             143205475 469 + 161824586 AATAAGAATGCTTATTTGAGCATCCCTTCTGGATTCTTATTTCCATACCCTGGCCTGTGGCCTGGGCCCTACT--AGCCTGTCCTTGTTTTAAAGTAT-ACTGTGAACTGGATATTC----ACAAGTTCCTTGACCTCTAAGAGCTCGCAGTTAACAGGAGGGATGAGGTACCTTTGTGATCATTT--GTTATAAGAT-GGACTGAGTGAGGAAAGAAAATGAAATGGGAAAACAGAAAGGAAGGACCGTTTGAGTAGAGAA-GTCTGAAAGTGTGTGAGGGGAGCGCAGTTCAGATCC--------TGAGGACG------------GAACAATGCA--ACAGAAGCATTTGTTGTGTTAGG-AAGAGGGATCCATTTGATAATAGAAGAAAATGCTTTA-----ATT------TCTCCATGACATTT----------------------------------------TACATC-AAAAAAC--------------TGTGTACATTTTATCATGC-----------TTTTCT---------------------------------TTGTCAAAGAAAAAACAA------------------------------CTGAAGTAGCAGCAC----------------------TGTGACTC---------TCTCCAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139028413 470 + 157549271 AATAAGAATGCTTATTTGAGCATCCCTTCTGGATTCTTATTTCTATACCCTGGCCTGTGACCTGGGCCCTACT--AGCCTGTCCTTGTTTTAAAGTAT-ACTGTGAACTGGATATTC----ACAAGTTCCCTGACCTCTAAGAGCTCGCAGTTAACAGGAGGGATGAGGTGACTTTGTGATCATTT--GTTATAAGAT-GGACTGAGTGAGGAAAGAAAATGAAATGGGAGAACAGAAAGGAAGGACCATTTGAGTACAGAA-GTCTGAAAGTGTGTGAGGGGAGGGCAGTTCAGATCC--------TGAGGACA------------GAGCAATGCA--ACAGAAGCATTTGTTGTGTTAGG-AAGAGGGATCCATTTGATAATAGAAGAAAATGCTTTA-----ATT------TCTCCATGACATTT----------------------------------------TATATCTAAAAAAC--------------TGTGTACATTTTATCATGC-----------TTTTCT---------------------------------TTGTCAAAGAAAAAAAAA------------------------------CTGAAGTAGCAGCAC----------------------TGTGATTC---------TCTTCAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93149153 468 + 110113093 AATAAGAATGCTTATTTGAGCATCCCTTCTGGATTCTTATTTCCATACCCTGGCCTGTGACCTGGGCCCTACT--AGCCTGTCCTTGTTTTAAAGTAT-AATGTGAACTGGATATTT----acaagttccctgacctctaagagctcacagttaacaggaggGATGAGGTAGCTTTGTGATCATTT--GTTATAAGAT-GGACTGACTGAGGAAAGAAAATGAAATGGGAGAACAGAAAGGAAGGACCGTTTGAGTAGAGAA-GTCTGAAA--GTGTGAGGGGAGTGCAATTCAGATCC--------TGAGGATG------------GAGCAATGCA--ACAGAAGCATTTGTTGTGTTAGG-AAGAGGGATCCATTTGATAATAGAAGAAAATGCTTTA-----ACT------TCTCCATGACATTT----------------------------------------TACATCTAAAAAAC--------------TGTGTACATTTTATCATGC-----------TTTTCT---------------------------------TTGTCAAACAAAAAACAA------------------------------CTGAAGTAGCAGCAC----------------------TGTGACGC---------TCTCCAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181043050 445 + 198365852 AATAAGAATGCTTATTTGAGCATCCCTTCTGGATTCTTATTTCCA------------TGACCTGGGCCCTACT--AGCCTGTCCTTATTTTAAAGTAT-ACTGTGAACTGGATATTC----ACAAGTTCCCTGAACTCTAAGAGCTCACAGTTAACAGGAGGGATGAGGTATCTTCGTGATCATTT--GTTATAAGAT-GGACAGAGTGTGCAAAGAAAATGAAATGGGAGAACAGAAAGGAAGGAATGTTTGAGTAGAGAA-TTCTGAAAGTGTGTGAGGGGAGTGCATTTCAGATCC--------TGAGGATG------------GAGCAATGCAGCACAGAAGCAT---TTGTGTT----AGGAGGGATCCATTTGATAATAGAAGAAAATGCTTTA-----ATT------TCTCCATGACATTT----------------------------------------TACATCTAAAAAAC----------------TGTACATTTTATCACAC-----------TTTTCT---------------------------------TTGTCACAGAAAAAACAA-------------------------------------AGCAGCAC----------------------TGTGACTC---------TCTCCTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174790711 445 + 192294377 AATAAGAATGCTTATTTGAGCATCCCTTCTGGATTCTTATTTCCA------------TGACCTGGGCCCTACT--AGCCTGTCCTTATTTTAAAGTAT-ACTGTGAACTGGATATTC----ACAAGTTCCCTGAACTCTAAGAGCTCACAGTTAACAGGAGGGATGAGGTATCTTCGTGATCATTT--GTTATAAGAT-GGACAGAGTGTGCAAAGAAAATGAAATGGGAGAACAGAAAGGAAGGAATGTTTGAGTAGAGAA-TTCTGAAAGTGTGTGAGGGGAGTGCATTTCAGATCC--------TGAGGATG------------GAGCAATGCAGCACAGAAGCAT---TTGTATT----AGGAGGGATCCATTTGATAATAGAAGAAAATGCTTTA-----ATT------TCTCCATGACATTT----------------------------------------TACATCTAAAAAAC----------------TGTACATTTTATCACAC-----------TTTTCT---------------------------------TTGTCACAGAAAAAACAA-------------------------------------AGCAGCAC----------------------TGTGACTC---------TCTCCAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163459318 464 + 180432695 AATAAGAAGGCTTATTTGAGCATCCCTTCTGGATTCTTATTTCCATACCCTGGCCTGTGACCTGGGCCCTACT--AGCCTGTCCTTGTTTTAAAGTAT-CCTGTGAACTGGATATTC----ACAAGTTCCCTGAACTCTAAGAGCTCACAGTTAACAGGAGGGATGAGGTACCTTCGTGATCATTT--GTTATAAGAT-GGACAGAGTgtgcaaagaaaatgaaatgggagaacagaaaggaaggaacatTTGAGTAGAGAA-TTCTGAAAGTGTGTGAGGGGAGTGCATTTTAGATCC--------TGAGGATG------------GAGCAATGCAGCACAGAAGCAT---TTGTGTTAGGAAGGAGGGATCCATTTgataatagaagaaaatgcttTA-----ATT------TCTCCATGACATTT----------------------------------------TACATCTAAAAAAC----------------TGTACATTTTATCACAC-----------TTTTCT---------------------------------TTGTCACAGAAAAAACAA----------------------------------AGTAGCAGCAC----------------------TGTGACTC---------TCTCCAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110486984 465 + 127223203 AATAAGAATGCTTATTTGAGCATCCCTTCTGGATTCTTATTTCCATACCCTGGCCTGTGACCTGGGCCCTACT--AGCCTGTCCTCATTTTAAAGTAG-ACTGTGAACTGGATATTC----ACAAGTTCCCTGAACTCTAAGAGCTCACAGTTAACAGGAGGGATGAGGTACCTTCGTGATCATTT--GTTATAAGAT-GGACAGAGTGTGCAAAGAAAATGAAACGGGAGAACAGAAAGGAAGGAACGTTTGAGTAGAGAAGTTCTGAAAGTGTGTGAGGGGAGTGCATTTCACATCC--------TGAGGATG------------GAGCAAGGCAGCACAGAAGCAT---TTGTGTTAGGAAGGAGGGATCCATTTGATAATAGAAGAAAATGCTTTA-----ATT------TCTCCATGACATTT----------------------------------------TACATCTAAAAAAC----------------TGTACATTTTCTCACAC-----------TTTTCT---------------------------------TTGTCAAAGAAAAAACAA----------------------------------AGTAGCAGCAC----------------------TGTGACTC---------TCTCCGG
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40469056 417 + 149736546 -------------ATTTGAATATGC---CCGAAGTCATATTTCCACTCATGTTTTTGTGTTC----CCCCATG--AA---------ATTTCTAGGTAC-ACTGTAAGCTAGGCTTTTTATAACAGGCTTTTTATGTTCTAGGAGCTCAT------CAATGGGGATGGCATACCTTCATGGTCATTT--ATAATACAAT--------------------------ATGCAAAAGAGGGAGGGAGTAACTAGTTGAGGAGAGCA-TTTTTAAAGTGTGTACAGGGC-TGTATTTCAGATTC--------TGGGGATATGGACAG---CTGACCGAGGTT-----GAAGTGTCTGTTGCACT----AAGAAGGAAC------ATTACCAGAAGCAATACCTCA-----GTTACAGTCTCTCCCTCACACTG----------------------------------------TACA---AGAACA-----------------TATCCATTGTAATACCT-----------TTTTTT-----------------------TGTTGTT--GTTGTTAAAAGGAAACCAT--------------------------------GAAGGAGCAGGAC---------------------TTGCAGCTT---------CTTCCAG
i mm10.chr6                C 0 I 4
s canFam3.chr16             52168212 620 -  59632846 --------------------------CTTTATCTTCCTATTTCTTTGTTCTGGCCTGTGACCTACACTGTTCTAAAGCCTCTCCTTGCTTTAAAGCATAATTTTTGGTTGGATATTC----acaaggtccccgtcctctaagagctcacagtcaatgcggaggatgagctaccttcatggtcatctaaattataatacaagactaagtgtgt-aagaaagtgaaatggaagaac--aaagtaaggac--tttgagtagaggg-ttttgaaagtatg---gagaaggGCATTGCAGATAACAGAACAGTGAGAACATTCTCAGATACTGAG-AATGCCTGGCTGGAGCATTTGTTGAG--GGG-AAGGAGGATGTAGTTGAT-----AAGAAAATGTTTTAGCTCCATT------CTTCCATGACGTCTTTtatttatatatatataaatatatatattatatatataatatatataaaagatttatttatatataatatatattttttattatatatatatatttattttatatataatatatataaataAaatattttattcatttattcatgagaatacacaggagagcgagagagaggcagagacacaggcagggggagaagcaggctccatgcagggagcccgacgtgggactcgatcccgggtctccag
i canFam3.chr16            C 0 I 128
e calJac3.chr8              23834675   3 - 128169293 I

a score=906646.000000
s hg38.chr7_GL383534v2_alt    106166 331 +    119183 CCAGCAATCTCGGGAGAATGTGTATTGGCAATTCCTGTCTG----------AGAATTCAGAGTA-CTCCAGACTCTCC----ACTAA-----------------GATGTTATTTATAAAGTTGTAAGAGTTTGCTCCAGGTTGTCTGTTTTCAATTTGCATGGTGCTTTCTGTATTTTT--CTTTATACAACTTCTCCCACACTCCTTACTCCAAAGTAT--GCAAATAGA--AAGGGAGATA-TTAGTGGCAT--CATGAAGAAAGAAATTTTAGGGCCAAGTGATTGGATACAGGTGAA-TGGATGTTGG---TGGTCAGAGAGAGA---TGAAGCTGATTACAAAGTTCAAGTCTGGGAGAATCTTGGTACCATTA
s panTro4.chr7             143205944 331 + 161824586 CCAGCAATCTCGGGAGAATGTTTATTGGCAATTCCTGTCTG----------AGAATTCAGAGTA-CTCCAGACTCTCC----ACTAA-----------------GATGTTATTTATAAAGTTGTAAGAGTTTGCTCAAGGTTGTCTGTTTTCAATTTGCATGGTGCTTTCTGTATTTTT--CTTTATACAACTTCTCCCACACTCCTTACTCCAAAGTAT--GCAAATAGA--AAGGGAGATA-TTAGTGGCAT--CATGAAGAAAGAAATTTTAGGGCCAAGTGATTGGATACAGGTGAA-TGGATGTGGG---TGGTCAGAGAGAGA---TGAAGCTGATTACAAAGTTCAAGTCTGGGAGAATCTTGGTACCATTA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139028883 333 + 157549271 CCAGCAATCTCGGGAGAATGTGTATTGGCAATTCCTGTCTG----------AGAATTCAGAGTA-CTCCAGACTCTCC----ACTAA-----------------GGTGTTACTTATAAAGTTGTAAGAGTTTGCTCAAGGTTGTCTGTTTTCAATTTGCATGGTGCTTTCTGCATTTTT--CTTTATACAACTTCTCCCACACTCCTTACTCCAAAGTAT--GCAAATAGA--AAGGGAGATA-TTAGTGGCATCACATGAAGAAAGAAATTTTAGAGCCAAGTGATTGGATACAGGTGAA-TGGATGTGGG---TGGTGAGAGAGAGA---TGAAGATGATTACAAAGTTCAAGTCTGGGAGAATCTTGGTACCATTA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93149621 348 + 110113093 CCAGCAATCTCGGGAGAATGTGTATTGGCAATTCCTGTCTG----------AGAATTCAGAGTA-CTCCAGACTCTCC----ACTAACTTTATAAATAACTCTCCATGTTATTTATAAAGTTGTAAGAGTTTGCTCAAGGTTGTCTGTTTTCAATTTGCATGGTGCTTTCTGCATTTTT--CTTTATACAACTTCTCCCACAATCCTTAATCCAAAGTAT--GCAAATAGA--AAGGGAGATA-TTAGTGGCAT--CATGAAGAAAGAAGTTTTAGGGCCAAGTGATTGGATACAGGTGAA-CGGATGTGGT---TGGTCAGAGTGAGA---TGAAGATGATTACAAAGTTCAAGTCTGGGAGAATCTTGGTACCATTA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181043495 328 + 198365852 CCAGCAATCTCAGGAGAATGTGTATTGGCAATTCCTGTCTG----------AGAATTCAGAGTA-CTCCAGACTCTCC----ACTAA-----------------GA---TATTTAGAAAGTTGTAAGAGTCTGCTTAAGGTTGTCTCTTTTCAATTTGCATGGTGCTTTCTGCATTTTT--CTTTACATAACTTCTCCCACACTCCTTACTCCAAAGTAT--GCAAATTGA--AAGGGAGATA-TTAGTGGCAT--CATGAAGAAAGAAGTTTTAGGGCCAAGTGATTGGATATGGGTGAA-TGGATGTGGG---TGGTCAGAGAGAGA---TGAAGATGATTATAAAGTTCAAGTCTGGAAGAATCTTGGTACCATTA
i rheMac3.chr3             C 0 I 55
s macFas5.chr3             174791156 328 + 192294377 CCAGCAATCTCAGGAGAATGTGTATTGGCAATTCCTGTCTG----------AGAATTCAGAGTA-CTCCAGACTCTCC----ACTAA-----------------GA---TATTTAGAAAGTTGTAAGAGTCTGCTTAAGGTTGTCTCTTTTCAATTTGCATGGTGCTTTCTGCATTTTT--CTTTATATAACTTCTCCCACACTCCTTACTCCAAAGTAT--GCAAATTGA--AAGGGAGATA-TTAGTGGCAT--CATGAAGAAAGAAGTTTTAGGGCCAAGTGATTGGATATGGGTGAA-TGGATGTGGG---TGGTCAGAGAGAGA---TGAAGATGATTATAAAGTTCACGTCTGGGAGAATCTTGGTACCATTA
i macFas5.chr3             C 0 I 1
s papAnu2.chr3             163459782 331 + 180432695 CCAGCAATCTCAGGAGAATGTGTATTGGCAATTCCTGTCTG----------AGAATTCAGGGTA-CTCCAGACTCTCC----ACTAA-----------------GATATTATTTAGAAAGTTGTAAGAGTTTGCTTAAGGTTGTCTCTTTTCAATTTGCATGGtgctttctgcattttt--ctttatagaaCTTCTCCCACACTCCTTACTCCAAAGTAT--GCAAATTGA--AGGGGAGATA-TTAGTGGCAT--CATGAAGAAAGAAGTTTTAGGGCCAAGTGATTGGATATGGGTGAA-TGGATGTGGG---TGGTCAGAGAGAGA---TGAAGATGATTATAAAGTTCAAGTCTGGGAGAATCTTGCTACCATTA
i papAnu2.chr3             C 0 I 1
s chlSab2.chr21            110487449 331 + 127223203 CCAGCAATCTCAGGAGAATGTGTATTGGCAATTCCTGTCTG----------AGAATTCAGGGTA-CTCCAGACTCTCC----ACTAA-----------------CATATTATTTAGAAAGTTGTAAGAGTTTGCTTAAGGTTGTCTCTTTTCAATTTGCATGGTGCTTTCTGCATTTTT--CTTTATATAACTTCTCCCACACTCCTTACTCCAAAGTAT--GCAAATTGA--AAGGGACATA-TTAGTGGCAT--CATGAAGAAAGAAGTTTTAGGGCCAAGTGATTGGATATGGGTGAA-TGGATGTAGG---TGGTCAGAGACAGA---TGAAGATGATTATAAAGTTCAAGTCTGGGAGAATCTTGGTACCATTA
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40469477 283 + 149736546 CCAGCCAAGGAAGGAGAATGTGT-----CAGTTCCTCTCTGGGTGGACAACAGGGCTCAG------TCAAGACTCCCC----ATTCA-----------------GGGGTTCTTTATAAAACG------------TTAAGGCAGGGTGCTCTCAAGTTTCA----GTTGTCTATATTTTT--CTTTAACCAACCTTCTCTACATTCTT----------------CAAATAGAACAAAGGCAAAA-CTAACGGGAT--AGTGAAGAACAGAAC------------TGGCTATACATGAGCCAA-TAGATGTCTGCAATGGGGAAACAGAGT---TAAGATTTACTCCACAGTTCAAGTCTGGG-----------ACCACTG
i mm10.chr6                I 4 I 1
s canFam3.chr16             52168960 323 -  59632846 CCAATAGTCT-AAGAACATGTGTATTGGTAATTCCTGTCTG----------AGAATTGAGATTAGTTTAAGATGCTATTTAGATTAA-----------------GATGTTATGTATAAAGTTAT--GAGTTTCCTCAAGG----CTGTTTTCAATTGGCA---TGCTTTCTGCTTTTTTAATTCTAAACAACCCTTTCCGCGCTCCTCA----GAAGTATGGGCAGATACA--AAGAGGGAGAGGTCATGGTAT--AATGAAATAAA----TTTAGGGC----TGAGCAGATATGAATAAACTGGATGTAGG---TGATTAGGAAGAGGTTTTAAAGATGACTCCAAAGTTCAACTCAGGGATAATGTTGGTACCATTA
i canFam3.chr16            I 128 C 0
e calJac3.chr8              23834675   3 - 128169293 I

a score=-800.000000
s hg38.chr7_GL383534v2_alt    106497 14 +    119183 -AACAAGG------AGCTTAG
s panTro4.chr7             143206275 14 + 161824586 -AACAAGG------AGCTTAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139029216 14 + 157549271 -AACAAGG------AGCTTAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93149969 14 + 110113093 -AACAAGG------AGCTTAG
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174791485  7 + 192294377 -AACAAAC-------------
i macFas5.chr3             I 1 C 0
s papAnu2.chr3             163460114  7 + 180432695 -AACAAAC-------------
i papAnu2.chr3             I 1 C 0
s chlSab2.chr21            110487780  4 + 127223203 ----AAAC-------------
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40469761 20 + 149736546 -AACAAAGCTTGCGAGGTGGG
i mm10.chr6                I 1 C 0
s canFam3.chr16             52169283 17 -  59632846 AAGTAAAC----AGAGTTTAG
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23834675  3 - 128169293 I
e rheMac3.chr3             181043823 55 + 198365852 I

a score=155839.000000
s hg38.chr7_GL383534v2_alt    106511 70 +    119183 AAGGGAGAAACTGACTTTGG-GCAAAAGGGTGAATT--GTTT------------TTCATTTGACTCTACCCCTCAAGTGGAAGCA
s panTro4.chr7             143206289 71 + 161824586 AAGGGAGAAACTGACTTTGG-GCAAAAGGGTGAATTT-GTTT------------TTCCTTTGACTCTACCCCTCAAGTGGAAGCA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139029230 72 + 157549271 AAGGGAGAAACTGACTTTGG-GCAAAAGGGTGAATTTACTTT------------TTCATTTGACTCTACCCCTCAAGTGGAAGCA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93149983 70 + 110113093 AAGGGAGAAACTGAC--TGG-GCAAAAGGGTGAATTTAGTTT------------TCCATTTGACTCTACCCCTCAAGTGTAAGCA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181043878 64 + 198365852 AAGGGAGAAACTGACATTGG-GCAAAAGAGTGAATTTAGTTT------------TTCATTTGA--------CTCAAGTGGAAACA
i rheMac3.chr3             I 55 C 0
s macFas5.chr3             174791492 64 + 192294377 AAGGGAGAAACTGACATTGG-GCAAAAGAGTGAATTTAGTTT------------TTCATTTGA--------CTCAAGTGGAAACA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163460121 64 + 180432695 AAGGGAGAAACTGACATTGG-GCAAAAGAGTgaatttagttt------------ttcatttga--------CTCAAGTGGAAGCa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110487784 64 + 127223203 AAGGGAGAAATTGACATTGG-GCAAAAGAGTGAATTTAGTTT------------TTCATTTGA--------CTTAAGTGGAAGCA
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40469781 61 + 149736546 CGGGCGGGATTTCTCTCTGGAGGAAAAGGAGCAACTTTGTTT------------TTCCTTTGT--------CT----TGCCTCCA
i mm10.chr6                C 0 C 0
s canFam3.chr16             52169300 80 -  59632846 AAGGGGGAAATTGGTTTTGG-AGGAAAGGATGAATTTTGCTTATTTTGCTTTCGTTCATCTGA----ACAGCTCAAGTAGAAGGA
i canFam3.chr16            C 0 I 379
e calJac3.chr8              23834675  3 - 128169293 I

a score=890910.000000
s hg38.chr7_GL383534v2_alt    106581 339 +    119183 GGATTTTTAAAGAG-AAAATCATTGGAAGTCATTGACAGTAGTAACATAGCAGGTGGGGTGTGGGATTACT-----AATTCCTGTGCAAGGC----TTGAAGGCAGTATAACATGGTATGTTTTAGGAGCTCAACATTGTGAAGGTGCCAGTAAAAT-GGAGGTAAGCATCTAGAAATACAGTTTACCAACTGGTGAGCAAGACCTTCAGGAGTGCGTTAAAGTGTGTGTGTTGGAAGCTATCTTAAG--------ATTTTATCCCT-----AAATGGCAAAA-ATGGGCAGATGAAAG--GTTTTAGGTAGAGG--CCTGAGGAGGTGATTTGCCTGTTAGAACAATATGGTGGGTACCTTCTTTCT
s panTro4.chr7             143206360 337 + 161824586 GGATTTTTA--GAG-AAAATCATTGGAAGTCATTGACAGTAGTAACATAGCAGGTGGGGTGTGGGATTACT-----AATTCCTGTGCAAGGC----TTGAAGGCAGTATAACATGGTATGTTTTAGGAGCTCAACATTGTGAAGGTGCCAGTAAAAT-GGAGGTAAGCATCTAGAAATACAGTTTACCAACTGGTGAGCAAGACCTTCAGGAGTGCGTTAAAGTGTGTGTGTTGGAAGCTATCTTAAG--------ATTTTATCCCT-----AAATGGCAAAA-ATGGGCAGATGAAAG--GTTTTAGGTAGAGG--CCTGAGGAGGTGATTTGCCTGTTAGAACAATATGATGGGTACCTTCTTTCT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139029302 339 + 157549271 GGATTTTTAAAGAG-AAAATCATTGGAAGTCATTGACAGTAGTAACATAGCGGGTGGGGTGTGGGATTACT-----AATTCCTGTGCGAGGC----TTGAAGGCAGTATAACATGGTATGTTTTAGCAGCTCAACATTGTGAAGGTGCCAGTAAAAT-GGAGGTAAGCATCTAGAAATACAGTATACCAACTGGTGAGCAAGACCTTCAGGAGGGGGTTAAAGTGTGTGTGTTGGAAGCTGTCTTAAG--------ATTTTATCCCT-----AAATGGCAAAA-ATGGGCAGATGAAAG--GTTTTAGGTAGAGG--CCTGAGGAGGTGATTTGCCTGTTAGAACAATATGGTGGGTAACTTCTTTCT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93150053 335 + 110113093 GGATTTTTAAAGAG-AAAATCACTGGAAGTCATTGACAGTAGTAACATAGCAGGTGGGGTGTGGGATTACT-----AATTCTTGTGCAAGGC----TCGAAGGCAGTATAACATGGTATGTTTTAGGAGCTCAACATTGTGAAGATGCCAGTAAAAT-GGAGGTAAGCATCTAGAAATACAGTATACCAACTGGTGAGCAAGACCTTCAGGAGTGGGTTAAAGTGTGTGTGTTGGAAGCTATCTTAAG--------ATTTTATCCCT-----AAATGGGAAAA-ATGGGCAGATGAAAG--GTTTTAGGTAGAGG--CCTGAGGAGGTGATTTGCCTGTTAGAACAATAT----GGTACCTTCTTTCT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181043942 339 + 198365852 GGATTTTTAAAGAGAAAAATCACTGGAAGCCATTGACAGTAGTAACATAGTGGGTAGAGTATGGGATTACT-----GATTCCTGTGCAAGGC----TTGAAGGCAGTATAGCGTGGTATGTTTTAGGAGCTCAACATTGTGAGGGTGCTAGTAAAAT-AGAGGTAAGCATCTGGAAATACGATATACCAACTGGTAAGCAAGACCTTCAGGAGTGAGTTAAG--GTGTGTGTTGGAAGCTATGTTAAG--------ATTTTATCCCT-----AAATGGCAAAAAATGGGAAGATGAAAG--GTTTTAGGTATAGG--CCTGAGGAGGTGATTTGCCTGTTAGAACAATACGGTGGGTACCTTCTTTCT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174791556 339 + 192294377 GGATTTTTAAAGAGAAAAATCACTGGAAGTCATTGACAGTAGTAACATAGTGGGTGGAGTATGGGATTACT-----GATTCCTGTGCAAGGC----TTGAAGGCAGTATAGCGTGGTATGTTTTAGGAGCTCAACATTGTGAGGGTGCTAGTAAAAT-AGAGGTAAGCATCTGGAAATACGATATACCAACTGGTAAGCAAGACCTTCAGGAGTGAGTTAAG--GTGTGTGTTGGAAGCTATGTTAAG--------ATTTTATCCCT-----AAATGGCAAAAAATGGGAAGATGAAAG--GTTTTAGGTAGAGG--CCTGAGGAGGTGATTTGCCTGTTAGAACAATACGGTGGGTACCTTCTTTCT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163460185 339 + 180432695 ggatttttaaagagaaaaatcactggAAGTCATTGACAGTAGTAACATAGTGGGTGGAGTGTGGGATTACT-----GATTCCTGTGCAAGGC----TTGAAGGCAGTATAGCGTGGTATGTTTTAGGAGCTCAACATTGTGAGGGTGCTAGTAAAAT-AGAGGTAAGCATCTGGAAATACGATATACCAACTGGTAAGCAAGACCTTCAGGAGTGAGTTAAG--GTGTGCGTTGGAAGCTATGTTAAG--------ATTTTATCCCT-----AAATGGCAAAAAATGGGAAGATGAAAG--GTTTTAGGTAGAGG--CCTGAGGAGGTGATTTGCCTGTTAGAACAATACGGTGGGTACCTTCTTTCT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110487848 339 + 127223203 GGATTTTTAAAGAGAAAAATCACTGGAAGTCACTGACAGTAGTAACATAGTGGGTGGAGTGTGGGATTACT-----GATTCCTGTGCAAGGC----TTGAAGGCAGTATAGTGTGGTATGTTTTAGGAGCTCAACTTTGTGAAGGTGCTAGTAAAAT-AGAGGTAAGCATCTGGAAATACGATATACCAACTGGTAAGCAAGACCTTCAGGAGTGAGTTAAG--GTGTGCGTTGGAAGCTATGTTAAG--------ATTTTATCCCT-----AAATGGCAAAATATGGGAAGATGAAAG--GTTTTAGGTAGAGG--CCTGAGGAGGTGATTTGCCTGTCAGAACAATACGGTGGGTACCTTCTTTCT
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40469842 270 + 149736546 AAGCTCATAAAGAG-GAAACCATTGAAC--------------TAATGTAGCAGGTGGGATGTCTTCTTATTACTAGGGTGTGTGTGTGTGTCCCTGTCCAATTCAGTGCCTCGT----TATTTCAGGAAATCAACTTTGTAAAGGTAAAAGTACAG--GGAAGTAAACATCTATAAAGGCG------TCACTAGTGAGCCAGACAATAA----------------------------------TTCAG--------ACCCCCCCCCCTCCTAAAATCAGAAAGAATG--------------------------GA--CCTTAGGAGGCAGTGTGTCTGTTTGAATGGTTTGG-AGTTCCCTTCTGTCT
i mm10.chr6                C 0 I 20
s canFam3.chr16             52169759 333 -  59632846 AGATTTTTAAACAG-GAGATGACTGCAGGGCACTGACAGCAGCACCACGGCCGGTGG-GTGTGGGACCATT-----AATAACTGCGCGAGGC----CTGAAGGCAGTACAACATGC--TGTTTCAGGAGCTGAACATTGTGAAGGTAGAGGTTAAACGGGAGGTAAGCGTCTAGCA------TGTACCAGCTCGTCAGCCAGGCTTTTAGGAGCAGGTTAAA--ATGTCCATTGGAAGCCATGTTAAGTAGTCTGTGTTTTCTCCTT-----TTGAGACAAAA-ATGGGCCAGTGAGGACCTCTCTAGGTATAGGGTCCCCAGATGGCAATTTGCTTGTTAGACTGGTCTGGCGGGGAAC--------
i canFam3.chr16            I 379 C 0
e calJac3.chr8              23834675   3 - 128169293 I

a score=123532.000000
s hg38.chr7_GL383534v2_alt    106920 49 +    119183 CCACAGTCTGGACAG--TGCCAGGACCAGGAGAAGGAGTGGAAGGGGCAGC
s panTro4.chr7             143206697 49 + 161824586 CCACAGTCTGGACAG--TGCCAGGACCAGGAGAAGGAGTGGAAGGGGCAGC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139029641 49 + 157549271 CCACAGTCTGGACAG--TGCCAGGACCAGGAGAAGGAGTGGAAGGGGCAGC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93150388 49 + 110113093 CCACAGTCTGGATAG--TGCCAGGACCAGGAGAAGGAGTGGAAGGGGCAGC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181044281 49 + 198365852 CCACAACCTGGACAG--TGCCAGGACCAGGAGAAAGAGTGGAAGGGGTGGC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174791895 49 + 192294377 CCACAACCTGGACAG--TGCCAGGACCGGGAGAAAGAGTGGAAGGGGTGGC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163460524 49 + 180432695 CCACAACCTGGACAG--TGCCAGGACCAGGAGATGGAGTGGAAGGGGTGGC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110488187 49 + 127223203 CCACAATCTGGACAG--TGCCAGGACCAGGAGATGGAATGGAAGGGGTGGC
i chlSab2.chr21            C 0 C 0
s canFam3.chr16             52170092 45 -  59632846 ------CCAGGACAGGCCCCCGGGGCCAGCAGAGGAGAGGCCTGGGGAGGC
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40470112 20 + 149736546 I
e calJac3.chr8              23834675  3 - 128169293 I

a score=167684.000000
s hg38.chr7_GL383534v2_alt    106969 65 +    119183 CCCCGCTGGT---GTGGGTTCTGCAATTTATGGGGCTCCA-TACATCCTTTTTCCCACT-----AGGCCCAGGG
s panTro4.chr7             143206746 65 + 161824586 CCCCGCTGGT---GTGGGTTCTGCAATTTATGGGGCTCCA-TACATCCTTTTTCCCACT-----AGGCCCAGGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139029690 68 + 157549271 CCCCGCTGGTGTGGTGGGTTCTGCAATTTATGGGGCTCCA-TACATCCTTTTTCCCACT-----AGGCCCAGGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93150437 65 + 110113093 CCCCGCTGGT---GTGGGTTCTGCAATTTATGGGGCTCCA-TACATCCTTTTTCCCACT-----AGGCCCAGGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181044330 65 + 198365852 CCCCACTGGT---GTGGGTTCTGTAATTTATGGGGCTCCA-TACATTCTTTTTCCCGCT-----AGGCCCAGGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174791944 65 + 192294377 CCCCACTGGT---GTGGGTTCTGTAATTTATGGGGCTCCA-TACATTCTTTTTCTCGCT-----AGGCCCAGGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163460573 60 + 180432695 CCCCACTGGT---GTGGGTTCTG-----TATGGGGCTCCA-TACATTCTTTTTCCCGCT-----AGGCCCAGGA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110488236 65 + 127223203 CCCTACTGGT---GTGGGTTCTGTAATTTATGGGGCTCCA-TACATTCTTTTTCCCGCT-----AGGCCCAGGA
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40470132 64 + 149736546 TCTTGTTGCC---TTGGGTTCCTTAATTTGTAGGA-TTCA-TAAGTGCGTTACTTCACT-----agggccagga
i mm10.chr6                I 20 C 0
s canFam3.chr16             52170137 64 -  59632846 CGCCTCTGGC---CCAGGTCCTGCAACCTGGACCACCCCAGTAC------CCTCCCACTGAGCAGGACCCAGG-
i canFam3.chr16            C 0 C 0
e calJac3.chr8              23834675  3 - 128169293 I

a score=328883.000000
s hg38.chr7_GL383534v2_alt    107034 95 +    119183 TTAGCGTAAATGAGAAGGaatttaaggggcaccaaggaactcagcaatcaagatttgtgatactttaatgaaatattcttaaaatattaaaacta
s panTro4.chr7             143206811 95 + 161824586 TTAGCGTAAATGAGAAGGaatttaaggggcaccaaggaactcagcaatcaagatttgtgatactttaatgaaatattcttaaaatattaaaacta
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139029758 95 + 157549271 TTAGCGTGAATGAGACGGaatttaaggggtaccaaggaactcagcaatcaagatttgtgatactttaatgaaatattcttaaaatattaaaacta
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93150502 95 + 110113093 TTAGCGTGAATGAGATGGaatttaaggggcaccaaggaactcagcaatcaagatttgtgatactttaatgaaatattcttaaaatattaaaacta
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181044395 95 + 198365852 TTAGCATGAATGAGAcagaatttaaggggcaccaagaaactcagcaatcaagatttgtaacacttgaatgaaatattcttaaaatattaaaacta
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174792009 95 + 192294377 TTAGCATGAATGAGAcagaatttaaggggcaccaagaaactcagcaatcaagatttgtaacacttgaatgaaatattcttaaaatattaaaacta
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163460633 95 + 180432695 TTAGCACGAATGAGACAGAATTTAAGGGGCACCAAGAAACTCAGCAATCAAGATTTGTAACACTTGAatgaaatattcttaaaatagtaaaacta
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110488301 95 + 127223203 TTAGCATGAATGAGAcagaatttaaggggcaccaagaaactcagcaatcaagatttgtgacactttaatgaaatattcttaaaatattaaaacta
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23834678 86 - 128169293 TCAGCATGAATGAGAcagaatttaaggggcactaagaaactcagcaatcaggatttgtgacactttagtaaaatattc---------taaaacta
i calJac3.chr8             I 3 C 0
s mm10.chr6                 40470196 94 + 149736546 ttagggtaaacaacataggatttagaggagcaaaagaaagtcagcaatcaaaagaaaagatgtctcaatgcagtattttggaaatgttaaaact-
i mm10.chr6                C 0 C 0
s canFam3.chr16             52170201 73 -  59632846 ----------------------CTGACggtgccaagaaacacagcaaccaagctcaaggacactttaatgcaatattttaaagatattaaaatta
i canFam3.chr16            C 0 I 771

a score=376707.000000
s hg38.chr7_GL383534v2_alt    107129 130 +    119183 atg-aaaaaaattcatgatgaataaaataccaaaattttaaataaagacaagatcagtaAGCTGAAGTTAATTAAAATTATTTAAGGTTGTT-ACTTGGTCAAGAAAAATTGTGAAGGCATGGCAATTCTCT--
s panTro4.chr7             143206906 130 + 161824586 atg-aaaaaaattcatgatgaataaaataccaaaattttaaataaagacaagatcagtaAGCTGAAGTTAATTAAAATTATTTAAGGTTGTT-ACTTAGTCAAGAAAAATTGTGAAGGCATGGCAATTCTCT--
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139029853 126 + 157549271 atg-aaaaaaattcacgatgaataaaataccaaaattttaaat----acaagatcagtaaGCTGAAGTTAATTAAAATTATTTAAGATTGTT-ACTTGGTCTAGAAAAATTGTGAAGGCATAGCAATTCTCT--
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93150597 130 + 110113093 atg-aaaaaaattcatgatgaataaaataccaaaattttaaataaagacaagatcagtaAGCTGAAGTTAATTAAAATTATTTAAGATTGTT-ACTTGGTCAAGAAAAATTGTGAAAGCATGGCAATTCTCT--
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181044490 126 + 198365852 atgaaaaaaaattcatgatgaataaaacaccaaaattttaaataaagacaagatcagtaAGCTG-----AATTAAAATTATTTAAGATTGTT-ACTTGGTCAAGAAAAATTGTGAAGGTATGGAAATTCTCT--
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174792104 126 + 192294377 atgaaaaaaaattcatgatgaataaaacaccaaaattttaaataaagacaagatcagtaAGCTG-----AATTAAAATTATTTAAGATTGTT-ACTTGGTCAAGAAAAATTGTGAAGGTATGGAAATTCTCT--
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163460728 131 + 180432695 atgaaaaaaaattcatgatgaataaaacaccaaaattttaaataaagacaagatCAGTAAGCTgaagttaattaaaattatttaagattgTT-ACTTGGTCAAGAAAAATTGTGAAGGTATGGAAATTCTCT--
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110488396 127 + 127223203 atgaaaaaaaaatcatgatgaataaaacaccaaaattttaaataaagacaagatcagtaAGCTG-----AATTAAAATTATTTAAGATTGTTAACTTGGTCAAGAAAAATTGTGAAGGTATGGAAATTCTCT--
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23834764 127 - 128169293 atg-aaaaaaattcaagatgaat-aaataccaagattttaaataaagacaagttcagtaAGCTAAAGTTAATTAAAATTATTTAAGATTGTT-ACTTGGTCAAGAAAAA-TGTG-AGCCATGGCAATTCTCT--
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40470290 116 + 149736546 ----aagaaattttactatgaacatgata---------ttaCCAAATACAAGATCAACAAGCTTAAGTTACTTGAGATTGTTTAAGACTGTC-ACTGAGTgctgga----tgtgatggcacatgcctttaatca
i mm10.chr6                C 0 I 235
e canFam3.chr16             52170274 771 -  59632846 I

a score=410761.000000
s hg38.chr7_GL383534v2_alt    107259 145 +    119183 CAAAAC-----AAGCA---AAGCAGATTTGAACACATTACTGATCAGTTTACTTCCATTAAAAGTAAAGTTAT-ATTACA-TCCATCTTGGCATAAATAAAATATTTAAACTTAAA---------ACAATGTTGTGAATTTTAATACACCtgtagtgtaacagg
s panTro4.chr7             143207036 145 + 161824586 CAAAAC-----AAGCA---AAGCAGATTTGAACACATTACTGATCGGTTTACTTCCATTAAAAGTAAAGTTAT-ATTACA-TCCATCTTGGCATAAATAAAATATTTAAACTTAAA---------ACAATGTTGTGAATTTTAATACACCtgtagtgtaacagg
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139029979 135 + 157549271 CAAAAC-----AAGCA---AAGCCGATTTGAAAACATTACTGATCAGTTTACTTCCATTAAAAGTAAAGTTAT------A-TCCATCTTGGCATAAATAAAATATTTAAACTT--------------AATGTTGTGAATTTTAATACACCtgtagtgtaacagg
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93150727 150 + 110113093 CAAAACAAGATAAGCA---AAGTAGATTTGAAAACATTGCTGATCAGTTTACTTCCATTAAAAGTAAAGTTAT-ATTACA-TCCATCTTGGCATAAATAAAATATTTAAACTTAAA---------ACAATGTTGCGAATTTTAATACACCtgtagtgtaacagg
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181044616 154 + 198365852 CAAAACAAGATAAGCAAAGAAGTAGATTTGAAAACATTACTGATCAGTTTACTTCCATTAAAAGTAAAGTTAT-ATTACACTCCATCTTGGCATAAATAAAATATTTAAAGTTAAA---------ACAGTGTTGTGAATTTTAATACACCtgtaatgtaatggg
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174792230 154 + 192294377 CAAAACAAGATAAGCAAAGAAGTAGATTTGAAAACATTACTGATCAGTTTACTTCCATTAAAAGTAAAGTTAT-ATTACACTCCATCTTGGCATAAATAAAATATTTAAAGTTAAA---------ACAGTGTTGTGAATTTTAATACACCtgtaatgtaatggg
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163460859 154 + 180432695 CAAAACAAGATAAGCAAAGAAGTAGATTTGAAAACATTACTGATCAGTTTACTTCCATTAAAAGTAAAGTTAT-ATTACACTCCATCTtggcataaataaaatatttaaagttaaa---------acaGTGTTGTGAATTTTAATACACCTGTAATGTACTGGG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110488523 151 + 127223203 CAAAACAAGATAAGCAAAGAAGTAGATTTGAAAACATTACTGATCAGTTTACTTCCATTAAAAGTAAAGTTAT-ATTACATTCCATCTTGGCATAAATAAAATATTTAAAGTTAAA---------ACAG---TGTGAATTTTAATACACCTGTAATGTAACGGG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23834891 143 - 128169293 CAAAACAAGAGAAGAA-AGAAGTAGATTTGAAAACATGACTGATCAGTTTAC-----TTAAGAGTAAACTTAT-ATTAAATTCCATCTTGGCAT-----AAATATTTAAACTTAAA---------ACAATGTTGTGAATTTTAATATACCtgtagtgtgacggg
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40470641 153 + 149736546 CAAAAT-----GAAAA---AAAAAAATCTAAAAAA--TACTGATCAGTTTCTTTCTA-TAAAAGTAAAATCTTAATTACACTTTGCTTTAAAATAAAGCAACGTTTTGACTTTTAACACTTCTTCAAAATGTTTTGGAATTTCATAAACTTTTAATGTTTTAGG
i mm10.chr6                I 235 I 451
e canFam3.chr16             52170274 771 -  59632846 I

a score=1032461.000000
s hg38.chr7_GL383534v2_alt    107404 358 +    119183 tccccccc--acccgggttactaaag--------------------------agtgtatgtccactgcctgaatcctga-----aggccatgtggcaaggccaaggtgaccagccaaagagcagctgtt--tgagaagccaaacatcccagagaatatctgagaacctaccaaagaaaacagctccatc----acacacagtaggctaaaagccagaaaattagcttacaagtagcttagggatgggaggccaggcggatctctacagctgtcatgctgccatccaggagtgccttgtatgtaagtcctgataaactcctctactcgccaagctggacttgtctgggtcaatctttggtttctcggcttcctctcagtttgggggaaggtttttatt
s panTro4.chr7             143207181 359 + 161824586 tcccccccc-acccgggttactaaag--------------------------agtgtatgtccactgcctgaatcctga-----aggccatgtggcaaggccaaggtgaccagccaaagagcaggtgtt--tgagaagccaagcatcccagagaatatctgagaacctaccaaagaaaacagctccatc----acacacagtaggctaaaagccagaaaattagcttacaagtagcttagggatgggaggccaggcggatctctacagctgtcatgctgccatccaggagtgccttgtatgtaagtcctgataaactcctctactcgccaagctggacttgtctgggttaatctttggtttctcggcttcctctcagtttgggggaaggtttttatt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139030114 365 + 157549271 tcccccca--ccctgggttactaaag--------------------------agtgtatgtccactgcctgaatcctgaaggccaggccatatgccaaggccatgatgaccagccaaagagcaggtgtttctgagaagccaaacatcccagagaatatctgagaacctaccaaagaaaacagctccatc----acacacagtaggctaaaagccagaaaattagcttacatgtagcttagggatgggaggccaggcagatctctacagctgtcctgctgccatctagcagtgccttgtatgtaagtcctgataaactcctctactcgccaagctgaacttgtccgggtcaatctttggtttctcggcttcttctcagtttgggggaaggtttttatt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93150877 365 + 110113093 tccacccccaccccgggttactaaag--------------------------agtgtatgtccactgcccgaatcctgaaggccaggccatgtgtcaaggccatgatgaccagccaaagagcaggtgtttctgagaagccaaacatcccagagaatatctgagaacctactaaagaaaacagctccatc----acacacagtaggctaaaagccagaaaattcgcttacaagtagcttagggatgggaggccaggtgggtctctacagctgtcctgctgccatccagcagtgccttgtatggaagt--ttatcaactcctctactcgccaagctggacttgtccgggtcaatctttggtttctcggcttcctctcagtttgggggaaggtttttatt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181044770 364 + 198365852 tcccccccgaccctgggttactaaag--------------------------agtgtatgtccactgcctgaatcctgaaggccaggccatgtgccaaggccacggtgaccagccagagagcaggtgtttctgagaagctaaagatctcagagaatatctgagaacctaccaaagaaaacagttccatc----acacacaataggctaaaagccagaaaattagcttacaagtagcttagggatgggaggccaggcggatctccacagctgtcctgctgccatccaggagtgccttgtatgtaagttctcataaa---ctccactcgccaagctgtactcgtgcaggtcaatctttggtttctcggcttcctctcagtttgggggaaggtttttatt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174792384 367 + 192294377 tcccccccgaccctgggttactaaag--------------------------agtgtatgtccactgcctgaatcctgaaggccaggccatgtgccaaggccacggtgaccagccagagagcaggtgtttctgagaagctaaagatctcagagaatatctgagaacctaccaaagaaaacagttccatc----acacacaataggctaaaagccagaaaattagcttacaagtagcttagggatgggaggccaggcggatctccacagctgtcctgctgccatccaggagtgccttgtatgtaagttctcataaactcctccactcgccaagctgtactcgtgcaggtcaatctttggtttctcggcttcctctcagtttgggggaaggtttttatt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163461013 367 + 180432695 TcccccccGACCCTGGGTTACTGAAG--------------------------AGTGTATGTCCACTGCCTGAATCCTGAAGGCCAGGCCATGTGCCAAGGCCATGGTGGCCAGCCAGAGAGCAGGTGTTTCTGAGAAGCTCAAGATCCCAGAGAATATCTGAGAACCTACCAAAGAAAACAGTTCCATC----ACACACAATAGGCTAAAAGCCAGAAAATTAGCTTACAAGTAGCTTAGGGATGGGAGGCCAGGCGGATCTCCACAGCTGTCCTGCTGCCATCCAGGAGTCCCTTGTATGTAAGTTCTCATAAACTCCTCCACTCGCCAAGCTGTACTTGTGCAAGTCAATCTTTGGTTTCTCGGCTTCCTCTCAGTTTGggggaaggtttttttt
i papAnu2.chr3             C 0 I 494
s chlSab2.chr21            110488674 393 + 127223203 TACCCCCCTACCCCGGGTTACTAAAGAGTGTACCCACCccgggttactaaaaagtgtatgtccactgcctgaatcctgaaggccaggccgtgtgccaaggccatggtgaccagccaaagagcaggtgtttctgagaggctaaagatcccagagaatatctgagaacctaccaaagaaaacagttccatc----acacacaataggctaaaagccagaaaattagcttacaagtagcttagggatgggaggccaggcggatttccacagctatcctgctgccatccaggagtgccttgtatgtaagttctcataaactcctccacttgccaagctgtacttgtccaggtcaatctttggtttctcggcttcctctcagtttggtggaaggtttttatt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23835034 344 - 128169293 tctt------ccctgggctactaaag--------------------------agtgtatgtccactgcctgaatcctgaaggccaggccatgtgccaaggccatggtg---------------------tctgacaagccaaatatcccagagaatatctgagaacctgccaaagaaaacagttccatcacaaacacacagcaggcaaacagccagaaaattagtttacaagtatcttagggatgagaggccaggtggatctctacagctgtcctgttgccttctgggagtgcctcatatgtaaatcctgataaactcatctactcgccaagctggacttgtctgggtcattctttggtttctcggcttcctctcggtttgggggaagggttttatg
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I

a score=221863.000000
s hg38.chr7_GL383534v2_alt    107762 106 +    119183 aatgcaattctgggtttttcttgttacaATATCTACTTTAAAA-----ATTTTCAATACTTCTTCAACTACTTTAATGTTCTGGAAatatatgtg-tatatatattgatata
s panTro4.chr7             143207540 103 + 161824586 aatgcaattctgggtttttcttgttacaATATCTACTTTAAAA-----ATTTTCAATACTTC---AACTACTTTAATGTTCTGGAAATATATGTG-TATATATATTGatata
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139030479 107 + 157549271 aatgcaattctgggtttttcttgttacaATACCTACTTTAAAA-----ATTTTCAATACTTCTTCAACTACTTTAATGTTCTGGAAATATATGTGTTATATATATTGATATG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93151242 101 + 110113093 aatgcaattctgggtttttcttgttacaATACCTACTTTAAAA-----ATTTTCAGTA-TTCTTCAACTACTTTAATGTTCTGGAAatatatgtg-tatata----gataca
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181045134 106 + 198365852 aatgcaattttgggtttttcttgtTATAATACCTACTTTAAAA-----ATTTTCAATACTGCTTCAACTACTTTAATGTTCTGGAAATATATGTG-TGTATATATTGATATA
i rheMac3.chr3             C 0 I 515
s macFas5.chr3             174792751 106 + 192294377 aatgcaattttgggtttttcttgtTATAATACCTACTTTAAAA-----ATTTTCAATACTGCTTCAACTACTTTAATGTTCTGGAAATATATGTG-TGTATATATTGATATA
i macFas5.chr3             C 0 C 0
s chlSab2.chr21            110489067 106 + 127223203 aatgcaattttgggtttttcttgttacaATACTGACTTTAAAA-----ATTTTCAATACTGCTTCAACTACTTTAATGTTCTGGAAATATATGTG-TGTATATGTCGATATA
i chlSab2.chr21            C 0 I 305
s calJac3.chr8              23835378 105 - 128169293 aatacaattctgttttttttttgtT---ATATCTACTTTAAAAATTTTATTTTCAACACTTC---AACTACTTTAATGTTCTGGAAatatatgtg-tatatatattgatatg
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I
e papAnu2.chr3             163461380 494 + 180432695 I

a score=7156.000000
s hg38.chr7_GL383534v2_alt    107868 9 +    119183 taacacata
s panTro4.chr7             143207643 9 + 161824586 taacacata
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139030586 9 + 157549271 TAACACata
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93151343 9 + 110113093 taacacata
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174792857 8 + 192294377 -CACACATA
i macFas5.chr3             C 0 I 181
s calJac3.chr8              23835483 4 - 128169293 -----tata
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I
e chlSab2.chr21            110489173 305 + 127223203 I
e papAnu2.chr3             163461380 494 + 180432695 I
e rheMac3.chr3             181045240 515 + 198365852 I

a score=2820.000000
s hg38.chr7_GL383534v2_alt    107877 3 +    119183 tac
s panTro4.chr7             143207652 3 + 161824586 tac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139030595 3 + 157549271 tac
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93151352 3 + 110113093 tac
i nomLeu3.chr13            C 0 C 0
s calJac3.chr8              23835487 3 - 128169293 tac
i calJac3.chr8             C 0 I 4
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I
e chlSab2.chr21            110489173 305 + 127223203 I
e papAnu2.chr3             163461380 494 + 180432695 I
e macFas5.chr3             174792865 181 + 192294377 I
e rheMac3.chr3             181045240 515 + 198365852 I

a score=90069.000000
s hg38.chr7_GL383534v2_alt    107880 144 +    119183 atatatattgatatatata--cacatatatacatacatatattttgtgtgatgatatatatatacc--gtctcaaaaatatatatgtgtatatatattgagatatatataca------cacatatttcattcatacatattgatatatatacac
s panTro4.chr7             143207655 146 + 161824586 atatatattgatatatata--cacatatatacatacatatattttgtgtgatgatatatatataccctgtctcaaacatatatatgtgtatatatattgagatatatataca------cacatatttcattgatacatattgatatatatacac
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139030598 145 + 157549271 atatatattgatatatata--cacatatatacatacatatattttgtgggatgatatatatataccctgtctcaaaaa-atatatgtgtatatatattgatatatacataca------cacatatttcattgatatatattgatatatatacac
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93151355 141 + 110113093 gtatatattgatatatata--cacatatatacatacatatattttgtgtgatgatatatatatacc--gtctcaaaaa---atatgtgtatatatattgatatatatataca------cacatatttcattgatatatattgatatatatacac
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174793046 136 + 192294377 atttatattgatatatatatccacatatacacatatatatattttgtgtg-----atatatacaccctgtctcaaaaa-----atgtgtgtatatatagatatatatatataaacatgcacatatttcatttatatat----atatatat----
i macFas5.chr3             I 181 C 0
s calJac3.chr8              23835494  49 - 128169293 atatatattgatgtataga--tatgtatttatgtatata--------------atatatatatat-----------------------------------------------------------------------------------------
i calJac3.chr8             I 4 C 0
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I
e chlSab2.chr21            110489173 305 + 127223203 I
e papAnu2.chr3             163461380 494 + 180432695 I
e rheMac3.chr3             181045240 515 + 198365852 I

a score=273997.000000
s hg38.chr7_GL383534v2_alt    108024 177 +    119183 atatatatatacacacatatatatattttttgagacagggtctctcactctgttgcacaggctggagtgcagtggtgtgatcatggctcactgaagcctcaacttcccaggctcaagcgatcctcccactt---------cagtagctgggattataagcacataccactatgcctggctaatttt
s panTro4.chr7             143207801 177 + 161824586 acatatatatacacacatatatatattttttgagacagggtctctcactctgttgcacaggctggagtgcagtggtgtgatcatggctcactgaagcctcaacttcccaggctcaagtgatcctcccactt---------cagtagctgggattataagcacataccactatgcctggctaatttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139030743 175 + 157549271 atatatatacacacacatatatatattttttgagacaggg--tctcactctgttgcacaggctggagtgcagtggtgtgatcatggctcactgaagcctcaacttcccaggctcaagcgatcctcccactt---------cagtagctcggactataagcacataccactacgcctggctaatttt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93151496 170 + 110113093 ----atatatacacacatatatatattttttgagacagcg--tctcactctgttgcacaggctggagtgtagtggtgtgatcatggctcactgaagcctcaacttcccaggctcaagcgatcctcccactt---------cagtagctgggactataagcacatacca-tatgcctggctaatttt
i nomLeu3.chr13            C 0 C 0
s macFas5.chr3             174793182 180 + 192294377 agatatatatacacatatatatatattttttgagacaggg--tctca----gttgcacaggctggagtgtagtgctgtgatcatggctcactgaaacctcaccttcccaggctcaagtgatcctcccacttcagcctccacagtagctggggctataagcacataccactatgcctggctaatttt
i macFas5.chr3             C 0 C 0
s chlSab2.chr21            110489478 184 + 127223203 atatatatacacacatatatatatattttttgagacaggg--tctcactctgttgcacaggctggagtgtagtggtgtgatcatggctcactgaaacctcaccttcccaggctcaagtgatcctcccacttcagcctccacagtagctggggctataagcacataccgctatgcctggctaatttt
i chlSab2.chr21            I 305 I 2
s calJac3.chr8              23835543 162 - 128169293 --------------------atat-ttttttgaggaaggg--tctcactctgttgcacaggcttgagtgtagtggtgtgatcatggttcactgaagcctcaacctcccaggttcaagctatcctcccacttcagcctccctagtagctggggctacaagcagataccactatacacagataattt-
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I
e papAnu2.chr3             163461380 494 + 180432695 I
e rheMac3.chr3             181045240 515 + 198365852 I

a score=294504.000000
s hg38.chr7_GL383534v2_alt    108201 169 +    119183 tttttttttttttt----------gagacggagtctcgcactgttgcccaggctggagtgcaggggcacgatctcagctcactgcaagctccgtctcccgggctctcgacattctcctgcctcagcctccctagtagttgggactacaggcacccactaccac---gcccagct--aatttttt
s panTro4.chr7             143207978 179 + 161824586 ttttttttttttttttttttttttgagacggagtctcgcactgtcgcccaggctggagtgcaggggcacgatctcagctcactgcaagctccgtctcccgggctctcgccattctcctgcctcagcctcccgagtagttgggactacaggcacccaccaccac---gcccagct--aatttttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139030918 169 + 157549271 tttttttttttttt----------gagacggagtcttgcactgtcgcccaggctggagtgcaggggcgcgatctcagctcactgcaagctccatctccctggctctcaccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccaccat---gcccagct--aatttttt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93151666 174 + 110113093 tttttttttttttt-----tttatgagacggagtctcccactgtcgcccaggctggagtgcaggggcgcgatctcagctcactgcaagctctgtctcccaggctctcgccattctcctgcctcagcctcccgagtagctgggactataggcgcccgccactgc---acccagct--aatttttt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181045755 168 + 198365852 tttttttttttttg----------gagatggagtctcacaccattgcccaggctggagag-aggggcgcgatctcagctcactgcaagctccaccacacgggttctcgccattctcctgcctaagcctcccgagtagctgggactacaggcacccgccaccac---gcctggct--aatttttt
i rheMac3.chr3             I 515 C 0
s macFas5.chr3             174793362 164 + 192294377 ----tttttttttg----------gagatggagtctcacaccattgcccaggctggagag-aggggcgcgatctcagctcactgcaagctccaccacacgggttctcgccattctcctgcctaagcctcccgagtagctgggactacaggcacccgccaccac---gcctggct--aatttttt
i macFas5.chr3             C 0 C 0
s chlSab2.chr21            110489664 168 + 127223203 tttttttttttttg----------gagatggagtcccacaccattgcccaggctggagag-aggggcacaatctcagctcactgcaagctccgccacccggattctcgccattctcctgcctaagcctcctgagtagctgggactacaggcacccgccaccac---gcctggct--aatttttt
i chlSab2.chr21            I 2 C 0
s calJac3.chr8              23835705 143 - 128169293 tttaatcttttgta----------gagacagggtttcaccatgttccccaagc-------------------------------cagttttgaactcctgggatcaagtgatccacctacctcaacctcccaaagtgctgggattacagacgtgagctacTACTGGACCTGGCCaaaatttttt
i calJac3.chr8             C 0 I 2602
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I
e papAnu2.chr3             163461380 494 + 180432695 I

a score=541280.000000
s hg38.chr7_GL383534v2_alt    108370 310 +    119183 gtatttttaggtagagacggggtttcaccgtgttagccgggatggtctcgatctcctgacctcgtgatcggcccgccttggcctcccaaagtgctgggattatgggcg-tgagccacggcgcccggctgcctggctaatttttgtattttttacagagacagggttttgccatgttgctcaagctgatcttgaactcctgggctcaagtgatccaccc-cctcaacctcccaaagtgctgggattacaaacatgagctactggacctggccAAAATTTTTTTAATTAAACATTTTTTTTTGTTTTTGTCTTT
s panTro4.chr7             143208157 308 + 161824586 gtatttttaggtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatcggcccgccttggcctcccaaagtgctgggattatgggcg-tgagccacggcgcccggctgcctggctaatttttgtattttttacagagacagggttttgccatgttgctcaagctggtcttgaactcctgggctcaagtgatccaccc-cctcaacctcccaaagtgctgagattacaaacatgagctactggacctggccAAAATTTTTTTAATTAAAC--TTTTTTTTGTTTTTGTCTTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139031087 310 + 157549271 gtatttttaggtagagacggggtttcaccgtgttagctaggatggtctcgatctcctgaccttgtgatcggcccgcctcggcctcccaaagtgctgggattatgggcgttgagccaccacgcctggccgcctggctaatttttgtattttttatagagacagggttttgtcatgttgctcaagctggtcttgaaatcctgggctcaagtgatccacct-tctcaacctcccaaagtgctgggattacaaacatgagctactggacctggccaaaatttttttaattaaaaa-attttCTTGTTTTTGTCTTT
i ponAbe2.chr7             C 0 I 3149
s nomLeu3.chr13             93151840 309 + 110113093 gtatttttaggtagagacggggtttcaccgtgttagccaggatggtctcaatctcctgacctcgtgatcgtcccgcctcggcctcccaaagtgctgggattatgggcg-tgagccaccgcgcctggccgcctggctaatttttgtattttttatagagacagggttttgccatgttgctcaagctggtcttgaactcctgggctcaagtgatccaccc-ccttaacctcccaaagtgctgggattacaaacatgagctactgggcctggccAAAATTTTTTTAATTAAAAT-TTTTTTTTGTTTTTGTGTTT
i nomLeu3.chr13            C 0 I 1
s rheMac3.chr3             181045923 306 + 198365852 gtatcttta-gtagagacggggtttcactgtgttagccaagatggtctcgatctcctgacctcgtgatctgcccgcctcggcctcccaaagttctgggattacaggcg-tgagccactgcgcctggctgcctggcaaatttttgtattttttgtagagacagggttttgccatgttgcccaagctggtcttgaactcctgggctcaagtgatccacctgcctcaaccttccaaagtgctgggattacaaacatgagctgctggacctggccaaaatttttttaattaaaa----ttttttGTTTTTGTCTTT
i rheMac3.chr3             C 0 I 3
s macFas5.chr3             174793526 308 + 192294377 gtatcttta-gtagagacggggtttcactgtgttagccaggatggtctcgatctcctgaccttgtgatctgcccgcctcggcctcccaaagttctgggattacaggcg-tgagccactgcgcctggctgcctggcaaatttttgtattttttgtagagacagggttttgccatgttgcccaagctggtcttgaactcctgggctcaagtgatccacctgcctcaaccttccaaagtgctgggattacaaacatgagctgctggacctggccAAAATTTTTTTAATTAAAA--ttttttttgtttttgtcttt
i macFas5.chr3             C 0 I 3
s chlSab2.chr21            110489832 308 + 127223203 gtatcttta-gtagagacagggtttcactgtgttagccaggatggtcttaatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcg-tgagccaccacgcccggctgcctggcaaatttttgtattttttgtagagacagggttttgccatgttgcccaagctggtcttgaactcccaggctcaagtgatccacctgcctcaaccttccaaagtgctgggattacaaacatgagctactggacctggccAAAATTTTTTTAATTAAAA--TTTTTTTTGTTTTTGTCTTT
i chlSab2.chr21            C 0 I 3
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I
e calJac3.chr8              23835848 2602 - 128169293 I
e papAnu2.chr3             163461380 494 + 180432695 I

a score=1365.000000
s hg38.chr7_GL383534v2_alt    108680 1 +    119183 A
s panTro4.chr7             143208465 1 + 161824586 A
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93152150 1 + 110113093 A
i nomLeu3.chr13            I 1 C 0
s rheMac3.chr3             181046232 1 + 198365852 A
i rheMac3.chr3             I 3 C 0
s macFas5.chr3             174793837 1 + 192294377 a
i macFas5.chr3             I 3 C 0
s chlSab2.chr21            110490143 1 + 127223203 A
i chlSab2.chr21            I 3 C 0
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I
e calJac3.chr8              23835848 2602 - 128169293 I
e papAnu2.chr3             163461380 494 + 180432695 I
e ponAbe2.chr7             139031397 3149 + 157549271 I

a score=293003.000000
s hg38.chr7_GL383534v2_alt    108681 171 +    119183 Tttttaatttttgtgggttcaaaggaagtgtatatatttatggagtacatgagatattttgatacaggtatgcaacgtcaaataagcacatcatgggggatggggtatcatctta---atttatcctttgagttacacacaatccaataacactcttattttaaaatgtacagt
s panTro4.chr7             143208466 169 + 161824586 Tttttaatttttgtgggttcaaaggaagtgtatatatttatggggtacatgaggtattttgatacaggtatgcaacgtcaaataagcacatgatgggggatggggtatcctctta---atttatcctttgagttacacacaatccaataacact--tattttaaaatgtacaat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139034546 174 + 157549271 Tttttaatttttatgggttcaaaggaagtgtatatatttatggggtacatgagatattttgatacaggcatgcaacgtcaaataagcacatcatgggggatggggtatcctcttaatcattcatcctttgagttacacacaatccaataacactcttattttaaaatgtacaat
i ponAbe2.chr7             I 3149 C 0
s nomLeu3.chr13             93152151 170 + 110113093 Tttttaatttttgtgggttcaaaggaagtg----tatttatggggtacatgagatattttgatacaggcatgcaacgtgaaataagcacatcatgggggatggggtatcctcttaatcatttatcctttgagttacacacaatccagtaacactcttattttaaaatgtacaat
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181046233 172 + 198365852 Ttttcaatttttgtgggttcaaaggaagtgtatatattta-ggggtacatgagatattttgatacaggcatgcaacgtgaaataagcacatcat-ggggatggggtatcctcttaatcatttatcctttgagttacacacaatccagtaacactcttattttaaaatgtacaat
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174793838 172 + 192294377 tttttaatttttgtgggttcaaaggaagtgtatatattta-ggggtacatgagatattttgatacaggcatgcaacgtgaaataagcacatcat-ggggatggggtatcctcttaatcatttatcctttgagttacacacaatccagtaacactcttattttaaaatgtacaat
i macFas5.chr3             C 0 C 0
s chlSab2.chr21            110490144 166 + 127223203 Tttttaatttttgtgggttcaaaggaag------tattta-ggggtacacgagatattttgatacaggcatgcaacgtgaaataagtacatcat-ggggatggggtatcctcttaatcatttatcctttgagttacacacaatccagtaacactcttattttaaaatgtacaat
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I
e calJac3.chr8              23835848 2602 - 128169293 I
e papAnu2.chr3             163461380 494 + 180432695 I

a score=3076778.000000
s hg38.chr7_GL383534v2_alt    108852 1358 +    119183 taagtaattattgactatagtcaacctattgtgccatcgaaaatagtaggtcttattcgttctatttttttgtacccattaaccatccccaccttccctccagccccccactaaccttcctagccccAATTTTTAAAAATACATAAGTACACATATACACAGGGGTGCATATTCTTCCTTGTGCCTCAGGCTCCAGTCTGGCTTGGATCCTGTATTCAGTTAAAATTTTAATAcagtcatgcacttcataatgatgttttggaaaa----agactgcatatacaacagtgcatatacaaaggtggtcccataagattacaatggagttgaaaaattcctatcgtctagtgacatcatacct-gctaaaacatcagaatgcaatgta-ttactcatgtgttacttgatattaataatgactatgtcactggtttatgtatttactatactttttattatattattatttaactta-ttttttaaaagttaactgtaaaacagcctcaggcaggtccttcaggagggattccagaagaagacactgttataggagatgacagctccctgtgtgtcactgcttctgaaaaccttccagtgggacaagatgtggaagtggaaggctgagattgatcataatgaccctgtgtaggcctaggctaatgtgtgtgtttatgtcttagtttttttaaaaaatggctaaaaag---------tt---------aaaaaaaaaaagaaaaaaagcaaaggtagaaaaaagcttgtagaataaggatataagaaaaatatttttgtacagtggtacagtgtgtgttttaagctaattgttattacaaaacagttaaaacgtaaaaaaatttggaagatttataaagttatagtgagtgaaagtttattaaaggaagaaaagtattttttataaactgagtgtagcctaagtgtacagtgtttatgaagtgtttagt-gggtacaataatgtcctagaccttcatgttgggccaccactcactcatttactcacccacagcaacttccagttccgcaagctccattcatggtaagcgccccatacaggtgtgccatttttatcttttataccgcatttgtactgtaccttttccatgtttacatatgtttagacacacagatacttaccatgaattacaatggtctgcggtattca--gtacagccccatgctgtcaggtttgcagcctggaagcagcaggccacacc----acagagccgaggtgtgtc-caggctccaccatctaggtcgtcaaagtacattctgtggtgttcgtacagcaacaaaatcgcctaatgacgcaatcctcagaccttaccctgttgttaaggtacacatgactCTtattttgttcctcccgga
s panTro4.chr7             143208635 1350 + 161824586 taagtaattattgactatagtcaacctattgtgccatcgaaaatagtaggtcttattcgttctatttttttgtacccattaaccatccccaccttccctccagccccccactaaccttcctagccccAATTTTTAAAAATACATAAGCACACATATACACAGGGGTGCATattcttccttgtgcctcaggctccagtctggcttggatcctgtattcagttaaaattttaatacagtcatgcacttcataatgatgttttggaaaa----agactgcatatacaacagtgcatatacaaaggtggtcccataagattacaatggagttgaaaaattcctatcgtctagtgacatcatacct-gctaaaacatcagaatgcaatgta-ttactcatgtgttacttgatattaataatgactatgtcactggtttatgtatttactatactttttattatattattatttaactta-tttttttaaagttaactgtaaaacagcctcaggcaggtccttcaggagggattccagaagaagacactgttataggagatgacagctccctgtgtgtcactgcttctgaaaaccttccagtgggacaagatgtggaagtggaaggctgagattgatcataatgaccctgtgtaggcctaggctaatgtgtgtgtttatgtcttagtttttttaaaaaatggctaaaaag---------tt---------aaaaaaaaaaag--------caaaggtagaaaaaagcttgtagaataaggatataagaaaaatatttttgtacagtggtacagtgtgtgttttaagctaattgttatcacaaaacagttaaaacgtaaaaaaatttgaaagatttataaagttatagtgagcgaaagtttattaaaggaagaaaagtattttttataaactgagtgtagcctaagtgtacagtgtttatgaagtgtttagt-gggtacaataatgtcctagaccttcatgttgggccaccactcactcatttactcacccacagcaacttccagttccgcaagctccattcatggtaagcgccccatacaggtgtgccatttttatcttttataccgcatttgtactgtaccttttccatgtttacatacgtttagacacacagatacttaccatgaattacaatggtctgcggtattca--gcacagccccatgctgtcaggtttgcagcctggaagcagcaggccacacc----acacagccgaggtgtgtc-caggctccaccatctaggtcgtcaaagtacattctgtggtgttcgtacagcaacaaaatcgcctaatgacgcaatcctcagaccttaccctgttgttaaggtacacatgactcttattttgttcctcccgga
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139034720 1332 + 157549271 taagtaattattgactatagtcaacctattgtgccatcgaaaatagtaggtcttattcattctatttttttgtactcattaaccatccccaccttccctccagccccccactaacgttcctagccccAATTTTTAAAAATACATAAGCACACATATATACAGGGGTGCATattcttccttgtgcctcaggctccagtctggcttggatcctgtattcagttaaaattttaatacaatcatgcacttcataacgatgttttggaaaa----agaatgcatatacaacagtgcatatacaaaggtggtcccataagattacaatggagttgaaaaattcctatcgtctagtgacatcatgcct-gctaaaacatcagaatgcaatgta-ttactcatgtgttacttgatattaataatgactatgtcactggtttatgtatttactatactttt-----tattattatttaacttatttttttaaaagttaactgtaaaacagcctcaggcaggtccttcaggagggattcc---agaagacattgttataggagatgacagctccctgtgtgtcactgcttctgaaaaccttccagtgggacaagacgtggaggtggaaggctgagactgatcacaatgaccctgtgtaggcctaggctaatgtgtgtgtttatgtcttagttttttaaaaaaatggcta-------------------------aaaaaaaaaaag--------caaaggtagaaaaaagcttgtagaataaggat---agaaaaatatttttgtacagtggtacagtgtgtgttttaagctaattgttattacaaaacagttaaaacgtaaaaaaa-ttgaaagatttaaaaagttatagtaagcaaaagtttactgaaggaagaaaagtattttttataaactgagtgtagcctaagtgtacagtgtttatgaagtgtttagt-gggtacaataatgtcctagatcttcatgttgggacaccactcactcactcactcacccacagcaacttccagttccgcaagctccattcatagtaagcgccccatacaggtgtgccatttttatcttttatactgcatttgtactgtaccttttccatgtttacatatgtttagacacacagatacttaccatgaattacaatggtctgcggtattca--gtatagccccatgctgtcaggtttgcagcctggaagcaacaggccacacc----acacagccgaggtgtggc-caggctctaccatctaggtcgtgaaagtacattctatggtgttcgcacagcaacaaaatcgcctaatgacgcaatcctcagacctttccctgttgttaaggtacacatgactCTtattttgttcctcccgga
i ponAbe2.chr7             C 0 I 26
s nomLeu3.chr13             93152321 1352 + 110113093 taagtaattattgactatagtcaacctactgtgccatcgaaaatagtaggtcttattcgttctatttttttgtacccattaaccatccccaccttccctccagccccccactaaccttcctagccccAATTTTTAAAAATACATAAGCTCACATATATACAAGGGTGCATattcttccttgtgcctcaggctccaatctggcttggatcctgtattcagttaaaattttaatacagtcatgcacttcataatgatgttttggaaaaagacagactgcatacacaacagtgcataaacaaaggtggtcccataagattacaatggagttgaaaaattcctatcgtctagtgacatcatacct-gctaatacatcagaatgcaatgta-ttactc--gtgttacttgatattaataatgactatgtcactggtttatgtatttactatactttttattatattattatttaactta-ttttttaaaagttaactgtaaaacagcctcaggcaggtccttcaggagggattccagaagaaggcattgttataggagatgacagctccctgtgtgtcactgcttctgaagaccttccagtgggacaagatgtggaagtggaaggctgagattgattataatgaccctgtgtaggcctaggctaatgtgtgtgtttatgtcttagttttttaaaaaaatggctaaaaag---------tta--------aaaaaaaaaaag--------caaaggtagaaaaaagcttgtagaataaggatataagaaaaatatttttgtacagtggtacagtgtgtgttttaagctaattgttactataaaacagttaaaacgtaaaaaaa-atgaaagatttataaagttatagtaagcgaaagtttactgaaggaagaaaagtattttttctaaactgagtgtagcctaagtgtacagtgtttatgaagtgtttagt-gggtacaataatgtcctagaccttcatgttgggccaccactcactcacttactcatccacagcaacttccagttccgcaagctccattcatggtaagcgccccatgcaggtgtgccatttttatcttttatactgcatttgtactgtaccttttccatgtttacatatgtttagacacacagatacttaccatcaattacaatggtctgcggtattca--gtacagccccatgctgtaaggtttgcagcctggaagcaacaggccacatc----acacagccgaggtgtgtc-caggctctaccatctaggtcgtcaaagtacattctatggtgttcgcacagcaacaaaatcgcctaatgacgcaatcctcagacctttccctgttgttaagctacacatggctcttattttgttcctcccgga
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181046405 1344 + 198365852 taagtaattactgactatagtcaacctattgtgtcatcgaaaatagcaggtctta----ttctatttttttgtatccattaacaatccccaccttccctccagccccccactaaccttcctagccccAGTTTTTAAAAATACATAAACACACATATATAT-GGGGCACACattcttccttgtgcttcaggctccaatctggcttagatcctgtattcagttaaaattttaatacagtcatgcacttcataatgatgtttgggaaaaagacagactgcatatacaacagtgcatctacaaaggtggtcccataacattacaatggagttgaaaaatttctattgtctagtgacatcgtacctaaataaaacatcagaatgcaatgta-ttactcatgtgttacttcatattaataatgactatgtcgctggtttatgtgtttactatactttttattatatta----ttaactta-tttttaaaaagttaactgtaaaacagcctcaagcaggtccttcaggagggattcgagaagaaggcattgttataggagatga-------ctgtgtgtcactgcttctgaagaccttccagtgggacaagaggtggaggtggaaggctgagactgatcataatgaccctgtgtaggcctaggctaatgtgtgtgtttatgtcttcgttttttttaaaaaaggcaaaaaagtttttttttttt-----------tttaaaaac--------caaaggtagaaaaaagcttacagaataaggatataagaaaaatatttttgtatagtggtacagtgtgtgttgtaagctaattgttattacaaaagagttaaaacgtaaaaaatattgaaagatttataaagttatagtaagtgaaagtttattgaaggaagaaaaatattttttataaacagagtgtagcctaagtgtatagtgtttatgaagtgtttagtggggtacaataatgtcctagaccttcgcgttgggttaccactcactcacccactcacccacagcaacttctaattctccaagctccattcatggtaagcgccccataca--------atttttatcttttatactgtatttgtactgtaccttttccatgtttacatatgtttagacacacacatacttaccatgaattacaatggtctgcggtattca--gcacagtcccatgctgtcaggtttgcagcctggaagcaacaggccacaccagtgacacagctgaggtgtgtcgcaggctctaccatttaggtcgtgaaagtacattctatggtgtccgcacaggaacgaaatcgcctaatgacgcattcctcagaacattccctgttgttaagctacacacgactcttattttgttcctcccgga
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174794010 1338 + 192294377 taagtaattactgactacagtcaacctattgtgtcatcgaaaatagcaggtctta----ttctatttttttgtatccattaacaatccccaccttccctccagccccccactaaccttcctagccccAGTTTTTAAAAATACATAAACACACATATATAT-GGGGCACACATTCTTCCTTGTGCTTCAGGCTCCAATCTGGCTTAGATCCTGTATTCAGTTAAAATTTTAATAcagtcatgcacttcataatgatgtttgggaaaaagacagactgcatatacaacagtgcatctacaaaggtggtcccataacattacaatggagttgaaaaatttctattgtctagtgacatcgtacctaaataaaacatcagaatgcaatgta-ttactcatgtgttacttcatattaataatgactatgtcgctggtttatgtgtttactatactttttattatatta---------tta-tttttaaaaagttaactgtaaaacagcctcaagcaggtccttcaggagggattccagaagaaggcattgttataggagatga-------ctgtgtgtcactgcttctgaagaccttccagtgggacaagaggtggaggtggaaggctgagactgatcataatgaccctgtgtaggcctaggctaatgtgtgtgtttatgtcttcgttttttttaaaaaaggcaaaaaag-ttttttttttt-----------aaaaaaaag--------caaaggtagaaaaaagcttacagaataaggatataagaaaaatatttttgtatagtggtacagtgtgtgttgtaagctaattgttattacaaaagagttaaaacgtaaaaaatattgaaagatttataaagttatagtaagtgaaagtttattgaaggaagaaaaatattttttataaacagagtgtagcctaagtgtatagtgtttatgaagtgtttagtggggtacaataacgtcctagaccttcgcgttgggttaccactcactcacccactcacccacagcaacttctaattctccaagctccattcatggtaagcgccccataca--------atttttatcttttatactgtatttgtactgtaccttttccatgtttacatatgtttagacacacacatacttaccatgaattacaatggtctgcggtattca--gcacagtcccatgctgtcaggtttgcagcctggaagcaacaggccacaccagtgacacagctgaggtgtgtcgcaggctctaccatttaggtcgtgaaagtacattctatggtgtccgcacagcaacgaaatcgcctaatgacgcattcctcagaacattccctgttgttaagctacacacgactCTtattttgttcctcccgga
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163461874 1343 + 180432695 TAAGTAATTACTGACTACAGTCAACCTATTGTGTCATCGAAAAGAGCAggtctta----ttcta-ttttttgtatccattaacaatCCCCACCTTCCCTCCAGCCCCCCACTAACCTTCCTAGccccag-ttttaaaaatacataaacacacatatatat-ggggCGCACATTCTTCCTTGTGCTTCAGGCTCCAATCTGGCTTAGATCCTGTAttcagttaaaattttaatacagtCATGTACTTCATAATGATGTTTGGGAAAAAGACAGACTGCATATACAACAGTGCATCTACAAAGGTGGTCCCATAACATTACAATGGAGTTGAAAAATTTCTATTGTCTAGTGACATCGTACCTAAATAAAACATCAGAATGCAATGTATTTACTCATGTGTTACTTGATATTAATAATGACTATGTCACTGGtttatgtgtttactatactttttattatatta----ttaactta-tttttaaaaagttaactgtaaaacagcctcaagcaggtccttcaggagggattccagaagaaggcattgttatagGAGATGA-------CTGTGTGTCACTGcttctgaagaccttccagtgggacaagaggtggaggtggaaggctGAGACTGATCATaatgaccctgtgtaggcctaggctaatgtgtgtgtttatgtc--cgtttttttttaaaaaggcaaaaaag---------ttt----aaaaaaaaaaaaaaag--------caaaggtagaaaaaagcttacagaataaggatataagaaaaatatttttgtatagtgGTACagtgtgtgttttaagctaattgttattacaaaagagttaaaacgtaaaaaatattgaaagatttATAAAGTTATAGTAAGTGAAAGTttattgaaggaagaaaaatattttttataaacagagtgtagcctaagtgtatagTGTTTATGAAGTGTTTAGTGGGGTACAATAATGTCCTAGACCTTCACGTTGGGttaccactcact----cactcacccacagCAACTTCTAATTCtccaagctccattcatggtaagcgCCCCATACAGGCgtaccatttttatcttttatactgtatttgtactgtaccttttccatgtttacatatgtttagacacacacatacttacCATGAATTACAATGGTCTGCGGAATTCA--GCACAGTCCCATGCTGTCAGGTTTGCAGCCTGGAAGCAACAGGCCACACCGGTGACACAGCTGAGGTGTGTCGCAGGCTCTACCATTTAGGTCGTGAAAGTACATTCTATGGTGTCCGCACAGCAACGAAATCGCCTAATGACGCATTCCTCAGAACATTCCCTGTTGTTAAGCTACACACGACTCTTATTTTGTTCCTCCCGGA
i papAnu2.chr3             I 494 C 0
s chlSab2.chr21            110490310 1349 + 127223203 taagtaattactgactatagtcaacctattgtgtcatcgaaaatagcaggtctta----ttcta-ttttttgtatccattaacaattcccaccctccctccagccccccactaaccttcctagccccAGTTTTTAAAAATACATAAGCACACATATATAT-GGGGTGCACATTCTTCCTTGTGCTTCAGGCTCCAATCTGGCTTAGATCCTGTATTCAGTTAAAATTTTAATAcagtcatgcacttcataatgatgtctgggaaaaagacagactgcatatacaacagtgcatctacaaaggtggtcccataacattacaatggagttgaaaaattcctattgtctagtgacattgtacct-aataaaacatcagaatgcaatgta-ttactcatgggttacttgatattaataatgactatgtcactggtttatgtgtttactatactttttattatatta----ttaactta-ttttttaaaagttaactgtaaaacagcctcaggcaggtccttcaggagggattccagaagaaggcattgttataggagatga-------ctgtgtgtcactgcttctgaagaccttccagtgggacaagaggtggacgtggaaggctgagactgatcataatgaccctgtgtaggcctaggctaatgtgtgtgtttatgtcttcgtttttttaaaaaaaggcaaaaaag---------ttaaaaaaaaaaaaagaaaaaag--------caaaggtagaaaaaagcttacagaataaggatgtaagaaaaatatttttgtatagtggtacagtgtgtgttttaagctaattgttattacaaaagagttaaaacgtaaaaaatattgaaagatttataaagttatagtaagtgaaagtttattgaaggaagaaaaatattttttataaactgagtgtagcctaagtgtctagtgtttatgaagtgtttagtggggtacaataatgtcctagaccttcacgttgggttaccactcactcactcactcacccacagcaacttctaattctccaagctccattcatggtaggcgccccatccaggcataccatttttatcttttatactgtatttgtactgtaccttttccacgtttacatatgttt-gacacacacatacttaccatgaattacagtggtctgcggtattcagtgtacagtcccatgctgtcaggtttgcagcctggaagcaacaggccacacc----acacagctgaggtgtgtcgcaggctctaccatctaggtcgcgaaagtacattctacggtgtccgcacagcaacgaaatcgcctgatgacgcattcctcagaacattccctgttgttaagctacacacgactCTtattttgttcctcccgga
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40470794  451 + 149736546 I
e canFam3.chr16             52170274  771 -  59632846 I
e calJac3.chr8              23835848 2602 - 128169293 I

a score=22062.000000
s hg38.chr7_GL383534v2_alt    110210 12 +    119183 tttcctgcatta
s panTro4.chr7             143209985 12 + 161824586 tttcctgcatta
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93153673 12 + 110113093 tttcctgcatta
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181047749 12 + 198365852 tttcttgcatta
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174795348 12 + 192294377 tttcttgcatta
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163463217 12 + 180432695 tttcttgcatta
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110491659 12 + 127223203 tttcttgcatta
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I
e calJac3.chr8              23835848 2602 - 128169293 I
e ponAbe2.chr7             139036052 26 + 157549271 I

a score=206898.000000
s hg38.chr7_GL383534v2_alt    110222 85 +    119183 atttttactttttaaaatattacattaatatattatttgattgccagtttttctggtgctcccttaaattGCACAGCCTGCCAGC
s panTro4.chr7             143209997 85 + 161824586 atttttactttttaaaatattacattaatatattatttgattgccagtttttctggtgctcccttaaattGCACAGCCTGCCAGC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139036078 85 + 157549271 atttttaccttttaaaatattacattaatatattatttgattgccagtttttctggtgctcccttaaatttcacagcctgTTAGC
i ponAbe2.chr7             I 26 C 0
s nomLeu3.chr13             93153685 85 + 110113093 atttttaccttttaaaatattacattaatatattatttgattgccagtttttctggtgctcccttaaatttcacagcctgTCAGC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181047761 85 + 198365852 atttttaccttttaaaatattacattaagatattatttgattgccagtttttctggtgctcccttaaatttgacggccTGTCAGC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174795360 85 + 192294377 atttttaccttttaaaatactacattaagatattatttgattgccagtttttctggtgctcccttaaatttgacggccTGTCAGC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163463229 85 + 180432695 atttttaccttttaaaatattacattaagaTATTATTTGATTGCCAGTTTTTCTGGTGCTCCCTTAAATTTGACGGCCTGTCAGC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110491671 85 + 127223203 atttttaccttttaaaatattacattaagatattatttgattgccagtttttctggtgctcccttaaatttgacggccTGTCAGC
i chlSab2.chr21            C 0 C 0
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I
e calJac3.chr8              23835848 2602 - 128169293 I

a score=827832.000000
s hg38.chr7_GL383534v2_alt    110307 342 +    119183 CCTTCCCTGGCTCCCCTTTCTTTTTCTGCTTTTCTTAGTGCTTCAACAGACCTGGGACGtt--ctttttc-tttcttttt---ttttttaattttcttctttttt----------tCtttttcttgttttgttttgttttgttttgagat-agagt-tcgctctgttgcccaggctggaatgcagtggtgcgttcacggctcaatgcagcaacgacctccagggctcaggcgatcccccgacctcagcctccggagaagcttggaccacaggcgcgcgccaccacgcccagctaa-ttatatattttttgtagagaca-ggtctcactatgtcgcctaggctggtcacaaaTG---TTGCTTTTT
s panTro4.chr7             143210082 336 + 161824586 CCTTCCCTGGCTCCCCTTTCTTTTTCTGCTTTTCTTAGTGCTTCAACAGACCTGGGACGttttctttttc-ttt-ttctt---tttttaaattttcttctttttt----------tctttttcttgttttgttttgttttgttttgagat-agagtctcgctctgttgcccaggctggaatgcagtggtgcgttcacggctcaatgcagcaacgacctccagggctcaggcga--------cctcagcctccggagaagcttggaccacaggcgcgcgccaccacgcccagctaa-ttatatattttttgtagagaca-ggtctcactatgtcgcctaggctggtcacaaaTC---TTGCTTTTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139036163 350 + 157549271 CCTTCCCCAGTTCCCCTTTCTTTTTCTGCTTTTCTTAGTGCTTTAACAGACCTGGGACGttttctttttc-ttt-ttctttaattttcttcttctcttttttttt----------ttttttgtttgttttgttttgttttgctttgagat-agagtctcgctctgttgcccagactggaatgcagtggtgcgttcacggctcaatgcagcaacgacctccagggctcaggcgatcccccgacctcagccttccgagaagcttggaccacaggcgcgcgccaccacgcccagctaa-ttttatattttttgtagagaca-ggtctcactctgtcgcctaggctggtcacaaaTCTTTTTGCTTTTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93153770 331 + 110113093 CCTTCCCCGGCTCCCTTTTCTTTTTCTGCTTTTCTTAGTGCTTTAACAGACCTGGGACGTTCTCTTTTTC-T---TTTTT---TTCTTTAAttttctgcttt------------------------ttttgttttgttttgttttgagat-agagtctcgctctgttgcccaggctggaatgcagtggtgcgttcacggctccatgcagcaacgacctccagggctcaggcgatcccccgacctcagcctcccgggaagcttggaccacaggggcgcgccaccacgcccagctaa-ttttatattttttgtagagaca-ggtctcactatgtcgcctaggctggtcacaaaTCTTTTTGCTTTTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181047846 331 + 198365852 CCTTCTCCGGCTCCCCTTTCTTTTTCTGCTTTTCTTAGTGCTTTAACAGGCCTGGAACGTTTTCTTTTTCTT---TTTTT---TTCTTTAAttttcttcttcttc--------------------------ttttttttttttttgagac-aaagtctcgctctgttgcccaggctgcagtgcggcggtgcgttcaccgctcaatgcagccacgacctccagggctctggtgatcccccgaccccagcctcccgagtagcttggaccccaggcgcgcgccaccacgcccagctaa-ttttatactttttgtagagacagggtctcactatgtcgcctaggctggtcacaaaTCGTTTTCCTTTCT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174795445 332 + 192294377 CCTTCCCCGGCTCCCCTTTCTTTTTCTGCTTTTCTTAGTGCTTTAACAGGCCTGGAACGTTTTCtttttc-t---ttttt---ttctttaattttcttcttcttc-------------------------tttttttttttttttgagacaaaagtctcgctctgttgcccaggctgcagtgcggcggtgcgttcaccgctcaatgcagccacgacctccagggctctggtgatcccccgaccccagcctcccgagtagcttggaccccaggcgcgcgccaccacgcccagctaa-ttttatactttttgtagagacagggtctcactatgtcgcctaggctggtcacaaaTCGTTTTCCTTTCT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163463314 338 + 180432695 CCTTCCCCGgctcccctttctttttctgcttttcttagtgctttaacaggcctggaacgttttctttttc-t---tcttt---ttctttaattttcttcttcttc------------------ttctttttttttttttttttttgagac-aaagtctcgctctgttgcccaggctgcagtgcggcgGTGCGTTCACGGCTCAATGCAGCCACGACCTCCAGGGCTCTGGTGATcccccgacctcagcctcccgagtagcttggaccccaggcgcgcgccaccacgcccagctaa-ttttatactttttgtagagacagggtctccctatgtcgcCTAGGCTGGTCACAAATCGTTTTCCTTTCT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110491756 356 + 127223203 CCTTCCCCGGCTCCCCTTTCTTTTTCTGCTTTTCTTAGTGCTTTAACAGGCCTGGAACGTTTTCtttttc-t---ttttt---ttctttaattttcttcttcttcttcttcttcttcttcttcttcttcttttttttttttttttgagac-aaagtctcgctctgatgcccaggctggagtgcggcggtgcgttcacggctcaaggcagccacgacctccagggctctggtgatcccccgacctcagcctcccgagtagcttggaccccaggcgcgcgccacgacgcccagctaa-ttttatactttttgcagaggcagggtctccctatgtcgcctaggctggtcacaaaTCGTTTTCCTTTCT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23838450 333 - 128169293 ccttccct---tccttcctccctccctcccttccttcgcatttc----------------tctctccttc-c---ttccc---ttcttc--cttccttcttcctc--cctcccttcctttattcctttttttttttttttttttttagac-agagtctcactctgttgcccaggttggagtgcagaggcgcgatctgggctcactgcagcctggacctcccgggctcaggtgatccccccacctcagtattctgagtagcctggaccaccggcacgcgccaccatgcccagctaatttttatattttttggagagaca-ggCCGCACTTTGTCGACTAGGCCTGTCATCAATCTTTTTGCTTTTT
i calJac3.chr8             I 2602 C 0
e mm10.chr6                 40470794 451 + 149736546 I
e canFam3.chr16             52170274 771 -  59632846 I

a score=303689.000000
s hg38.chr7_GL383534v2_alt    110649 140 +    119183 -TTTCCCTCCAGGCAGAGCTAGTCTCTG-TTTTGCCTACCTCGCCCCCTCCTGGGCC-CAGTTAGAAACCTCATCACATAATTTCATTTCTTTCCAAACTTGAAACCTTCTAAACTTGAAACCTTCTAAACTTGAAAC--CTTCC-
s panTro4.chr7             143210418 139 + 161824586 -TTCCCC-CCAGGCAGAGCTAGTCTCTG-TTTTGCCTACCTCGCCCCCTCCTGGGCC-CAGTTAGAAACCTCATCACATAATTTCATTTCTTTCCAAACTTGAAACCTTCCAAACTTGAAACCTTCTAAACTTGAAAC--CTTCC-
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139036513 123 + 157549271 -TTTCCC-CCAGGCAGAGCTAGTCTCTG-TTTTGCCTACCTCGCCCCCTCCCGGGCC-CAGTTAGAAACCTCATCACATAATTTCATTTCTTTCCAAACTTGAAACCTTCC----------------AAACTTGAAAC--CTTTC-
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93154101 123 + 110113093 -TTTCCC-CCAGGCAGAGCTAGTCTCTG-TTTTGCCTACCTCGCCCCCTCCCGGGCC-CAGTTAGAAACCTCACCACATAATTTCATTTCTTTCCAAACTTGAAACCTTCC----------------AAACTTTAAAC--CTACC-
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181048177 107 + 198365852 -CCCCCC-ACAGGCAGAGCTAGTCTCTG-TTTCGCCTACCTCGCCCCCTCCCGGGCA-CAGTTAGAAACCTCATCACAGAATTTCATTT-------AATTTG-------------------------AACCTTGAAAC--CTTCC-
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174795777 107 + 192294377 -CCCCCC-ACAGGCAGAGCTAGTCTCTG-TTTTGCCTACCTCGCCCCCTCCCGGGCA-CAGTTAGAAACCTCATCACAGAATTTCATTT-------AATTTG-------------------------AACCTTGAAAC--CTTCC-
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163463652 107 + 180432695 -CCCCCC-ACAGGCAGAGCTAGTCTCTG-TTTTGCCTACCTCGCCCCCTCCCGGGCA-CAGTTAGAAACCTCAtcacataatttcattt-------aatttg-------------------------aaCCTTGAAAC--CTTCC-
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110492112 107 + 127223203 -CCCCCG-AAAGGCAGAGCTAGTCTCTG-TTTTGCCTACCTCGCCCCCTCCCGGGCA-CCGTTAGAAACCTCATCACATAATTTCATTT-------AATTTG-------------------------AACCTTGAAAC--CTTCC-
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23838783 104 - 128169293 -TCCCCC--CAGGCAGAGCTA--TTCTG-TTTTGCCGATCTCGCCCCCTCCCGGGCC-AGGTTAGGAACCTCATCACGTAATTTCATTT-------CATTCG-------------------------AAACTTGAAAC--TTTCC-
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52171045 110 -  59632846 TCCCCCC-GCAGGCGGAGC-ATCCTTTGCCCTCGCCCACCTCGGCCCCTCCTGGGCCACAG--GGGAAGCTCGTCCAATCATTTCATTT-------TATTAG-------------------------AAACTTGAAATCACTTCCG
i canFam3.chr16            I 771 C 0
e mm10.chr6                 40470794 451 + 149736546 I

a score=1698721.000000
s hg38.chr7_GL383534v2_alt    110789 536 +    119183 AAACTCACCAC--TTGGCGGCGTTGATCCATCCGCCCGCGCAC----------------------------AAAGAGAAGATCGCGGAACTTCAGAGTTAAGGGGAGCCGTTTCCCGCAGCGCTAGCCGGCAGTATTTCCAAGGCGCAAGTTGCGGAGTTTCTGTTTCCTTTTTCCTCTGGCGAGCTTTGCGTTCCCTGTG-CGCCGGAAGTGATCCCCTGCGTGGCTGGGCTGCTCGGGTTAGATCGTCAGGTGAGGGAGGAAGGGATAGCCAGCGCGAAGGAAGTGCTGGAGTCGTGTGTTTTGGCTGCGCGTGATCCTGCGTGGGTCGGGAGGTGTTTC------TGTGTAGGTGTCTGGCCCT--TTC---ATCAGTCGTGCGGAGGACCGCGTGATTTCCT--TCCAGTTCTCCTCGGTTTTCAGGTGGTG--------GCGCCATCTTCGGTAAAGGGTGTCCACCTCTCCCTATGGTGTGGCT-----------------GGCTAGCCCGGGGGTCTCTACGCTGCTTGGTCTTTGTTAACGGAGATGAAGGCAGTAATTTT-TCAGTAACAGGTTTCAGATATAAGTCCCTTGGTGAT
s panTro4.chr7             143210557 536 + 161824586 AAACTCACCAC--TTGGCGGCGTTGATCCATCCGCCCGCGCAC----------------------------AAAGAGAAGATCGCGGAACTTCAGAGTTAAGGGGAGCCGTTTCCCGCAGCGCTAGCCGGCAGTATTTCCAAGGCGCGAGTTGCGCAGTTTCTGTTTCCTTTTTCCTCTGGCGAGCTTTGCGTTCCCTGTG-CGCCGGAAGTGATCCCCTGCGTGGCTGGGCTGCTCGGGTTAGATCGTCAGGTGAGGGAGGAAGGGATAGCCAGCGCGAAGGAAGTGCTGGAGTCGTGTGTTTTGGCTGCGCGTGATCCTGCGTGGGTCGGGAGGTGTTTC------TGTGTAGGTGTCTGGCCCT--TTC---ATCAGTCGTGCGGAGGACCGCGTGATTTCCT--TCCAGTTCTCCTCGGTTTTCAGGTGGTG--------GCGCCATCTTCGGTAAAGGGTGCCCACCTCTCCCTATGGTGTGGCT-----------------GGCTAGCCCGGGGGTCTCTACGCTGCTTGGTCTTTGCTAACGGAGATGAAGGCAGTAATTTT-TCAGTAATAGGTTTCAGATATAAGTCCCTTGGTGAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139036636 537 + 157549271 AAACTCACCAC--TTGGCGGCGTTGATCCATCCGCCCGCCCAC----------------------------AAAGAGAAGATCGCGGAACTTCAGAGTTAAGGGGAGGCGTTTCCGGCAGCGCTAGCCGGCAGTATTTCCAAGGCGCAAGTTGCGGAGGTTCTATTTCCTTTTTCCTCTAGCGAGATTTGCGTTCCCTGTG-CGTAGGAAGCGATCCCCTGCGTGACTGGGTTGCTCGGGTTAGAGCGTCAGGTGAGGGAGAAAGGGATAGCCAGCGCGAAGGAAGTGCTAGAGTCGTGTGTTTTGGCTGCGCGTGATCCTGCGTGGGTCGGGAGATGTTTC------TGTGTAGGTGTCTGGCCACGGTTC---ATCAGTCGTGCGGAGTACCGCGTGATTTCCTTCTCCAGTT---CTCGGTTTTCGGGTGGTG--------GCGCCATCTTCGGTAAAGGGTGCCCACCTCTCCCTACGGTGTGGCT-----------------GGCTAGCCCGGGGGTCTGTACGCTGCTTGGTCTTTGCTAACGGAGATGAAGGCAGTAATTTT-TCAGCAACAGGTTTCAGATATAAGTCCCTTGGTGAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93154224 533 + 110113093 AAACTCACCAC--TTGGCGGCGTTGATCCATCCGCACGCGCAC----------------------------AAAGAGACGATCGCGGAACTTCAGAGTTAAGGGGAGGCGTTTCCCGCAGCGCTAGCCGGCAGTATTTCCAAGGCGCAAGTTGCGGAGTTTCTGTTTCCTTTTTCCTCTAGCGAGCTTTGCGTTTCCTGTG-CACCGGAAGTGATCCCCTGCGTGGCTGGGCTGCTCGGGTTAGAGCGTCAGGTGAGGGAGGAAGGGATAGCCAGCGCGAAGGAAGTGCTGGAGTCGTGTGTTTTGGCTGCGCGTGATCCTGCGTGGGTCGGGAGGTGTTTC------TGTGTAGGTGTCTGGCCCT--TTC---ATCAATCGTGCGGAGGACCGCGTGATCTCCT--TCCAGTT---CTCGGTTTTCGGGTGGTG--------GCGCCACCTTCGGTAAAGGGTGCCCACCTCTCCCTACGGTGTGGCT-----------------GGGTAGCGCGGGGGTCTCTACGCTGCTTGGTCTTTGCTAACGGAGATGAAGGCAGTAATTTT-TCAGCAACAGGTTTCAGATATAAGTCCCTTGGTGAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181048284 529 + 198365852 AAACTCACCAC--TTGGCGGCGTTGAT-CATCCTCCCGCGACC----------------------------AAAGAGAAACTCGCGGAACTTCAGAGTTAAGGGGCGGCGTTTCCCACGGCGCTCGCCGGCAGTATTTCCAAGGCGCACGTTGTGGAGTTTCTGCTTCCTTTTTCCTCTCGCGAGCTTTGCGTTCCCTGTG-CCCCGGAAGTGATCCCCTGGTTGGCTCGGCTGCTCGGGTTAGAGCGTCGGGTGAGGG----AGGGATAGCAAGCGCTAAGCAAGTGGTGGAGTCCTGTGTTTTGGCTGCGCGTGATCCTGCGTGGGTCGGAAGGTGTTTC--------TGTAGGTGTCTGGCCCT--TTC---CTCAGTCGTGCCGAGGACTGCGTGATTTCTT--CCCAGTTCTCCTCGGTTTTCAGGTGGTG--------GCGCCACCTCCGGTAAAGGGTGCCCACCTCTCCCCACGGTGTGGCT-----------------GGCTAGCCCGGGGATCTCTACGCTGCTTGGTCTTTGCTAACGGAGATGAAGGCAGTAATTTT-TCAGCAACAGGTTTCAGATATAAGTCCCTTGGTGAC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174795884 529 + 192294377 AAACTCACCAC--TTGGCGGCGTTGAT-CATCCTCCCGCGACC----------------------------AAAGAGAAACTCGCGGAACTTCAGAGTTAAGGGGCGGCGTTTCCCACGGCGCTCGCCGGCAGTATTTCCAAGGCGCACGTTGTGGAGTTTCTGCTTCCTTTTTCCTCTCGCGAGCTTTGCGTTCCCTGTG-CCCCGGAAGTGATCCCCTGGTTGGCTCGGCTGCTCGGGTTAGAGCGTCGGGTGAGGG----AGGGATAGCAAGCGCCAAGCAAGTGGTGGAGTCCTGTGTTTTGGCTGCGCGTGATCCTGCGTGGGTCGGAAGGTGTTTC--------TGTAGGTGTCTGGCCCT--TTC---CTCAGTCGTGCCGAGGACTGCGTGATTTCTT--CCCAGTTCTCCTCGGTTTTCAGGTGGTG--------GCGCCACCTCCGGTAAAGGGTGCCCACCTCTCCCCACGGTGTGGCT-----------------GGCTAGCCCGGGGATCTCTACGCTGCTTGGTCTTTGCTAACGGAGATGAAGGCAGTAATTTT-TCAGCAACAGGTTTCAGATATAAGTCCCTTGGTGAC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163463759 529 + 180432695 AAACTCACCAC--TTGGCGGCGTTGAT-CATCCTCCCGCGACC----------------------------AAAGAGAAACTCGCGGAACTTCAGAGTTAAGGGGCGGCGTTTCCTACGGCGCTCGCCGGCAGTATTTCCAAGGCGCACGTTGTGgagtttctgcttcctttttcctctcGCGAGCTTTGCGTTCCCTGTG-CCCCGGAAGTGATCCCCTGGTTGGCTCGGCTGCTCGGGTTAGAGCGTCGGGTGAGGG----AGGGATAGCAAGCGCTAAGCAAGTGGTGGAGTCCTGTGTTTTGGCTGCGCGTGATCCTGCGTGGGTCGGGAGGTGTTTC--------TGTAGGTGTCTGGCCCT--TTC---CTCAGTCGTGCGGAGGACTGCGTGATTTCCT--CCCAGTTCTCCTCGGTTTTCAGGTGGTG--------GCGCCACCTCCGGTAAAGGGTGCCCACCTCTCCCCACGGTGTGGCT-----------------GGCTAGCCCGGGGATCTCTACGCTGCTTGGTCTTTGCTAACGGAGATGAAGGCAGTAATTTT-TCAGCAACAGGTTTCAGATATAAGTCCCTTGGTGAC
i papAnu2.chr3             C 0 I 324
s chlSab2.chr21            110492219 529 + 127223203 AAACTCACCAC--TTGGCGGCGTTGAT-CATCCTCCCGCGACC----------------------------AAAGAGAAACTCGCGGAACTTCAGAGTTAAGGGGCGGTGTTTCCCACAGCGCTCGCCGGCAGTATTTCCAAGGCGCACGTTGTGGAGTTTCTGCTTCCTTTTTCCTCTCGCGAGTTTTGCGTTCCCTGTG-CACCGGAAGTGATCACCTGGTTGGCTCGGCTGCTCGGGTAAGAGCGTCGGGTGAGGG----AGGGATAGCAAGCGGTAAGCAAGTGGTGGAGTCTTGTGTTTTGGCTGCGCGTGATCCTGCGTGGGTCGGGAGGTGTTTC--------TGTAGGTGTCTGGCCCT--TTC---CTCAGTCGTGCGGAGGACTGCGTGATTTCCT--CCCAGTTCTCCTCGGTTTTCAGGTGGTG--------GCGCCACCTCCGGTAAAGGGTGCCCACCTCTCCCCACGGTGTGGCT-----------------GGCTAGCCCGGGGATCTCTACGCTGCTTGGTCTTTGCTAATGGAGATGAAGGCAGTAATTTT-TCAGCAACAGGTTTCAGATATAAGTCCCTTTTTGAC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23838887 534 - 128169293 AAATTCACCAC--TTGGCGGCGTTGATCCATCCTCTCCCGCCC----------------------------AAAGAGAAGCTCGCGGAACTTCAGAGTTAAGGGGAGGCGTTTCCCACAGACCTGGCCGGCAGTATTTCCAAGGCGCACGTTGCGGAGTT--TGTTTCCTTTTTCCTCTCGCGAGCTTCGCGTTCCCTGTG-CCTCGGAAGTGATCCCCTGACTAGCTGGGCTGGCCGGGTTAGAGCGTCAGGTGAGGGAGGCAGGGAGGGCAGGCATGAAAGAAGTGCTGGAGCTGTGTGTTTTGGCTGCGCGCGATCCTCCGTGGATCGGGAGGTGGTGC------TGTGTGGGTGTCTGGCCCT--TTCCTTCTCAGTTGTGCGGAGGACACCGTGGTTTCCT--CCCAGTT---CTCGGTTTTCAGGTGGTG--------GCGCCACCTCCAGGAAAGGGCGTCAGCCTCTCCGGACAGTGTGGCT-----------------GGGTAGCCCGTGGGTTTCTACGCTGCTTGGTCTTTGTTAACGGAGATGAAGGCAGTAATTTT-TCAGCAACAAGTTTCAGATATAAGTCCCTTGGTGAC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40471245 452 + 149736546 AAACTACCCACAGGTGGCATCGTTGATCCGCCCACTTCCGCCT----------------------------GGACAGAAGTTCCTGGCACTTCTAAATTGAGGGGTCGTGTTTCCGGCGACATCAGCCGGCGGCATTTCAACGACGCACTTCAGAGATTTCCTGTCTTTCCTTGCATCTCGCGAGCTTTGCGGGCTCCGTG-CGCCGGAAGCGAGCCGCT---------GGCGGTCGGGCTCTGCGTGTCCGGTGAGGGAGG-GGAGAAGGCTGGCACGA------------AGTTGTGTTTCCCGAGTGCACGGGCGCGTGCGGGGCTCGGGAGG-----------------AGTTGTGCGGCTCC--TCG---CT------------GGAGTCCGAGTGTCCCC--CGCCGTTCCCTGTGCTGCTCGCG----A--------GCGCCACTTTGGGGGAAGAGCAGCCTCTTGCCCCCGCGGCGAGGCT-----------------GGGGAGCCGG--------------GCTTACTCAGCGCTAACGGGGACGAAGGCACTGATT-----------------------TGCGTCCTTTCGGAG-
i mm10.chr6                I 451 C 0
s canFam3.chr16             52171155 541 -  59632846 CTACTCACCGC--TCGGCCGCGTTGCCTCATCCGCTTCCGCCCGGAGGTGGaaaaaaaaaaaaaaaaaaaaaaaaagaaGCTGGCGGAACTACCGCGT----------CGCTTCCGGAAGCGCTGCCCGG-AGCGTTTCTACGACGCACGCCGCAGCCGTTCCGCGTTCTCATTCCTCTCGCGAGGCGTGCGTTCTCCCTGTCCCCGGAAGTGCTTGTGGCGGTGAC---GCTGAACCCGCGAGAGCTTCCGGTGCGGG----AGGG--GGCGAGCG-------------GGAGC------TCGTCGCTGC---TGAT--------GGCGAGGAGGTGCTGCGGCTGCTGTGTGTGTGTCTCGGCTC--TTC-TTCTCCCCCGTGCGGAGGACTTCAGGGTTTTCT--GTCACTTCCCAGGTCTTTTTACGGGGTGGGTTAGGAGCGCCACCTTTGGGAAGGGG-ACCCGCCCGTCCCTGCGGGGAGGCCGGGGCCGGGGGGGTGGGGGGGAGTCCCGGGGTCTC-------CGTGGGCTTTGCCACCGGCATGGAGGGCGGTGATTTTAGCAGCTCCAGGTTTCAGATTTACATCCCTTGGTGAC
i canFam3.chr16            C 0 C 0

a score=444540.000000
s hg38.chr7_GL383534v2_alt    111325 152 +    119183 --GCTaatatttatggaggccttactatgcattaagaac----ttttttagaagtttagaaaatggcagtga--ataaagcag-------------------------------------------atacaaatctct-------gctctaagggagcttgcatagtaatgaaatttgagaagacagTGGATTGGAAGTGGGATTAACTC
s panTro4.chr7             143211093 152 + 161824586 --GCTaatatttatcaaggccttaccatgcattaagaac----ttttttagaagtttagaaaatggcagtga--ataaagcag-------------------------------------------ataaaaatctct-------gctctaagggagcttgcattgtaatgaactttgagaagacagTGGATTGGAAGTGGGATTAACTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139037173 152 + 157549271 --GCTaatatttattgagcccttactatgcattaagaac----ttttttagaagtttagaaaatggcagtga--ataaagcag-------------------------------------------ataaaaatctct-------gccctgagggagcttgcattgtaatgaaatttgagaagacagTGGATTGGAAGTGGGATTAACTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93154757 151 + 110113093 --GCTaatatgtattgagcccttactatgcattaagaac----ttttttagaagtttag-aaatggcagtga--ataaagcag-------------------------------------------ataaaaatctct-------gccctaagggagcttgcattgtaatgaaatttgagaagacagTGGATTGGAAGTGGAATCAACTC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181048813 148 + 198365852 --GCTaatagtttttgagcctttactatgcct---aaac----ttttttagaagtttagaaaatggcagtga--ataaagcag-------------------------------------------ataaaaatctgt-------gccctaggggagcttgcattgtaatCAGATTTGAGAAGA-AGTGGATTGGAAGTGGGATTAACTC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174796413 148 + 192294377 --GCTaatagtttttgagcctttactatgcct---aaac----ttttttagaagtttagaaaatggcagtga--ataaagcag-------------------------------------------ataaaaatctgt-------gccctaggggagcttgcattgtaatCAGATTTGAGAAGA-AGTGGATTGGAAGTGGGATTAACTC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163464612 148 + 180432695 --gctaataGTTTTTGAGCCTTTACTATGCCT---AAAC----TTTTTTAGAAGTTTAGAAAATGGCAGTGA--ATTAAGCAG-------------------------------------------ATAAAAATGTGT-------GCCCTAGGGGAGCTTGCATTGTAATCAGATTTGAGAAGA-AGTGGATTGGAAGTGGGGTTAACTC
i papAnu2.chr3             I 324 C 0
s chlSab2.chr21            110492748 148 + 127223203 --GCTAATCGtttttgagcctttactatgcct---aaac----ttttttagaagtttagaaaatggcagtga--ataaagcag-------------------------------------------ataaaaatctgt-------gccctaggggagcttgcattgtaatCAAATTTGAGAAGA-AGTGGATTGGAAGTGGGATTAACTC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23839421 156 - 128169293 --GCTaatatttattgagcccccactatgcgttaagaacttttttttttagaagtttagaaaagggcagtga--ataaagcag-------------------------------------------ataaaaatctct-------gccctaagggagcttgcattggaatgaaatttgagaagacagTGGATTGGAATTGGGATTAACTC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40471697 141 + 149736546 ----TAGCGTTTACTGTGCCCGCACTGTTTGT-AGAGAC----AGTTTTAGGGGTCTAG--AATAACA--GA--ACAAGTTGG-------------------------------------------AAAAAAAAATGT----------CCGAGACAACTTCTATTGTAAAGAAATCT-AGCAGACAATGGATTGCAAGTGAGAACAGGTT
i mm10.chr6                C 0 I 71
s canFam3.chr16             52171696 204 -  59632846 GTTGTCATACTTGGTGGGCCTCCACTATGGGTCAGGAAC----AAACTTAGGAGCGTTGGATGTGGCAGTCAATATAAATCAGCCCTGGGAAGGGGGGGGGCTTGCatttttattttcttacatatatatatatttttaattGGGAACTCAAGGGGGCTTGCATTTTGCTGGAATTTGAGAAGACCGTGGAATGCGAGTGGGGAAAAA--
i canFam3.chr16            C 0 C 0

a score=234308.000000
s hg38.chr7_GL383534v2_alt    111477 82 +    119183 AGAATCAAAATTTTGTC--GATGGGTTGGAGGAAGAGGAAGTTATTTGGG--ACCAAAAAGACAT-ACAGGTGTGAGTTT----------ATTTGGG
s panTro4.chr7             143211245 82 + 161824586 AGAATCAAAATTTTGTC--GATGGGTTGGAGGAAGAGGAAGTTATTTGGG--ACCAAAAAGACAT-ACAGGTGTGAGTTT----------ATTTGGG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139037325 82 + 157549271 AGAATCAAAATTTTGTC--TGTGGGTTGGAGGAAGAGGAAGTTATTTGGG--ACCAAAAAGACAT-ACAGGTGTGAGTTT----------ATTTGGG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93154908 82 + 110113093 AGAATCAAAATTTTGTC--TATGGGTTGGAGGAAGAGGAAGTTATTTGGG--GCCAAAAAGACAT-ACAGGTGTGAGTTT----------ATTTGGG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181048961 78 + 198365852 ACAATCAAAATTTTGTC----TGGGTTGGAGGAAGAGGAAGTTGTTTGGG--ACCAAAATGAC---ACAGGTGTGAGTTT----------ATTTGGG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174796561 78 + 192294377 ACAATCAAAATTTTGTC----TGGGTTGGAGGAAGAGGAAGTTGTTTGGG--ACCAAAATGAC---ACAGGTGTGAGTTT----------ATTTGGG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163464760 80 + 180432695 ACAATCAAAATTTTGTC----TGGGTTGGAGGAAGAGGAAGTTGTTTGGG--ACCAAAAAGACAT-ACAGGTGTGAGTTT----------atttggg
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110492896 80 + 127223203 ACAATCAAAATTTTGTC----TGGGTTGGAGGAAGAGGAAGTTGTTTGGG--ACCAAAAAGACAT-ACAGGTGTGAGTTT----------ATTTGGG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23839577 83 - 128169293 AGAATCAAAATTGTGTT--TATGGGTTGGAGAAAGAGGAAGTTATTTGGG--ACCAAAAAGACGTAACAGGTGTGAGTGT----------ATTTGGG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52171900 96 -  59632846 AAAATCAGTTTTTTTTTTTTTTTGGTAGGAGTTAGAGGAAGAAGCAAGGGGAGTAAAAACGACTT-CAACTTCTTTTTTTTTTTTTTTTCATTTGAG
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40471838 71 + 149736546 I

a score=151050.000000
s hg38.chr7_GL383534v2_alt    111559 46 +    119183 AGGGAGGAAGGAATCCTCATCAGATGTGCAGGAATGTTGGTACGTT
s panTro4.chr7             143211327 46 + 161824586 AGGGAGGAAGGAATCCTCATCAGATGTGCAGGAATGTTGGTACGTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139037407 46 + 157549271 AGGGAGGAAGGAATCCTCATCAGATGTGCAGGAATGTTGGTACGTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93154990 46 + 110113093 AGGGAGGAAGGAATCCTCATCAGATATGCAGGAATGTTGGTATGTG
i nomLeu3.chr13            C 0 I 459
s rheMac3.chr3             181049039 46 + 198365852 AGGGAGGAAGGAATCCTCATCAGGTGTGCAGGAATGTTGGTACGTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174796639 46 + 192294377 AGGGAGGAAGGAATCCTCATCAGGTGTGCAGGAATGTTGGTACGTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163464840 46 + 180432695 agggaggaaggaatccTCATCAGTTGTGCAGGAATGTTGGTACGTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110492976 46 + 127223203 AGGGAGGAAGGAATCCTCATCAGGTGTGCAGGAATGTTGGTACGTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23839660 46 - 128169293 AGGGAGGAAGGAATTCTCACCAGGTGTGCCGGAATGTTGGTGTGTT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40471909 34 + 149736546 AAAAAGAAAGGAA--CTCCCCACACGTGCAAAAAAT----------
i mm10.chr6                I 71 C 0
s canFam3.chr16             52171996 34 -  59632846 -----AGGAAGAGTCCTGGTAAAATGTGCAGGGATGTTT-------
i canFam3.chr16            C 0 C 0

a score=1638278.000000
s hg38.chr7_GL383534v2_alt    111605 533 +    119183 GTGGTCACAAAATTGGAGTGCATAAAAATTATGAATATAGTTAGGAATTTAGGACTGGTGAGT---TGTACTTTTGCCATAAGAGGTAATGT----------TTTTTTCTTATTTTGTTTTT---TTCCTTCAGGAAAAGCCTAAAGATTAGACTGTAAGAAAAGAAAATAGA---AGCCATGTTTCGAAGACCTGTATTACAGGT----AGTCACTTGTCTGTATTAATA-----CTGAGATGTATTACTATCAGCCACAGTGATCAGAAGACTT----CTTTAGGCTTTTAACTACAG-GGGCAAAAGACCTTTGAGCTCACCCACC--CACCTCTATACTCATTTGATATGGAGGATTGGGGACG---ATTTTGCCAGTGTA-----------------------AATTATGTTCACTAAAACAAAAAAAAAGTTC--AGGTTTATTCACAC---GTAATAGGAATCA----TTAATT---TTTAAAATGTGTGTGT--------------------------------GTTGCTTGAATTTA-ACCAGTGAGAGGACATTAAAGGTCTTTAGTGACCTAAAGACTGTAGGAATCATTGTTCCAACTTTTTTCT-TAAGGCATGTAGTTGCTTTTTT
s panTro4.chr7             143211373 533 + 161824586 GTGGTCACAAAATTGGAGTGCATAAAAATTATGAATATAGTTAGGAATTTAGGACTGGTGAGT---TGTACTTTTGCCATAAGAGGTAATGT----------TTTTTTCTTATTTTGTTTTT---TTCCTTCAGGAAAAGCCTAAAGATTAGACTGTAAGAAAAGAAAATAGA---AGCCATGTTTCGAAGACCAGTATTACAGGT----AGTCACTTGTCTGTATTAATA-----CTGAGATGTATTACTATCAGCCACAGTGATCAGAAGACTT----CTTTAGGCTTTTAACTACAG-GGGCAAAAGACCTTTGAGCTCACCCACC--CACCTCTATACTCATTTGATATGGAGGATTGGCGACG---ATTTTGCCAGTGTA-----------------------AATTATGTTCACTAAAACAAAAAAAAAGTCC--AGGTTTATTCACAC---GTAATAGGAATCA----TTAATT---TTTAAAATGTGTGTGT--------------------------------GTTGCTTGAATTTA-ACCAGTGAGAGGACATTAAAGGTCTTTAGTGACCTAAAGACTGTAGGAATCATTGTTCCAACTTTTTTCT-TAAGGCATGTAGTTGCTTTTTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139037453 534 + 157549271 GTGGTCACAAAATTGGAATGCATAAAAATTATGAATATAGTCAGGAATTTAAGACTGGTGAGT---TGTACTTTTGCCATAAGAAGTAATGT----------TTTTTTCTTATTTTGTTTTT---TTCCTTCAGGAAGAGCCTAAAGATTAGACTGTAAGAAAAGAAAATAGAAGCAGCCATGTTTCGAAGACCTGTATTACAGGT----AGTCGCTTGTCTGTATTAGTA-----CTGAGATGTATTACTATCAGCCACAGTGATCAGAAGACTT----CTTTAGGCTTTTAACTACAG-GGGCAAAAGACCTTTGAGCTCACCCACC--CACCTCTGTACTCATTTGATATGGAGGATTGGGGACG---ATTTTGCCAGTGTA-----------------------AATTATGTTCACTA----AAAAAAAAAGTTC--AGGTTTATTCACAC-ATGTGATAGGAGTCA----TTAATT---TTTAAAACGTGTGTGT--------------------------------GTTGCTTGAATTTA-ACCAGTGAGAGGACATTAAAGGTCTTTAGTGACCTAAAGACTGTAGGAATCATTGTTCCAACTTTTTTCT-TAAGGCATGTGGTTGCTTTTTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93155495 534 + 110113093 GTGGTCACAAAATTGAAGTGCATAAAAATTATGAATACAGTTAGGAATTTAGGACCAGTGAGT---TGTACTTTTGCCATAAGAAGTAATG-----------CTTTTTCTTATTTTGTTTTT---TTCCTTCAGGAAGAGCCTAAAGATTAGACTGTAAGAAAAGAAAATAGA---AGCCATGTTTCGAAGACCTGTATTACAGGT----AGTCACTTGTCTGTATTAATA-----CTGAGATGTATTACTATCAGCCACAGTGATCAGAAGACTT----CTTTAGGCTTTTAACTACAG-GGGCAAAAGACCTTTGAGCTCACCCACG--CACCTCTGTACTCATTTGATATGGAGGATTGGGGATG---ATTTTGCCAGTGTA-----------------------AATTATGTTCACTAAAACAAAAAAAAAGTTC--AGGTTTATTCACAC-ATGTAATAGGAATCA----TTAATT---TTTAAAACGTGTGTGT--------------------------------GTTGCTTGAATTTA-ACCAGTGAGAGGACATTAAAGGTCTTTAGTGACCTAAAGACTGTAGGAATCATTGTTCCAACTTTTTTCT-TAAGGCATGTGGTTGCTTTTTT
i nomLeu3.chr13            I 459 C 0
s rheMac3.chr3             181049085 529 + 198365852 GTGGTCACAAAATTGGAGTGCATAAGAATTATGAATGCAGTTAGGAATTTAGGACTGGTGAGT---TGTGCTTTTGCCATAAGAAGTAATG--------------TTTCTCATTTTGTTTTT---TTCCTTTAGGAAGAGCCTAAAGATTAGACTGTAAGGAAAGAAAATAGA---AGCCATGTTTCGAAGACCTGTGTTACAGGT----AGTCACTTGTCTGTATTAATA-----TTGAGATGTATTACTATCAG---CGGTGATCAGAAGACTT----CTTCAGGCTTTTAACTACA--GGGCTAAAGACCTTTGAGCTCACCCACC--CACCTCTGTACTCAACTGATACGGAGGATTGGTAGTGTAAATTTTGCCAGTGTA-----------------------AATTATGTTCACTAAAAC-AAAAAAAAGTTC--AGGTTTATTCACAT-ATGTAATCGGAATCA----TTAATT---TTTAAAACGTGTGTGT--------------------------------GTTGCTTGAATTTA-AGCAGTGAGAGAACATTATAGGTCTTTAGTGACCTAAAGACTGTAGGAATCATTGTTCCAACTTTTTTCT-TAAGGCGTGTAGTTGCTTTTTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174796685 529 + 192294377 GTGGTCACAAAATTGGAGTGCATAAGAATTATGAATGCAGTTAGGAATTTAGGACTGGTGAGT---TGTGCTTTTGCCATAAGAAGTAATG--------------TTTCTCATTTTGTTTTT---TTCCTTTAGGAAGAGCCTAAAGATTAGACTGTAAGGAAAGAAAATAGA---AGCCATGTTTCGAAGACCTGTGTTACAGGT----AGTCACTTGTCTGTATTAATA-----TTGAGATGTATTACTATCAG---CGGTGATCAGAAGACTT----CTTCAGGCTTTTAACTACA--GGGCTAAAGACCTTTGAGCTCACCCACC--CACCTCTGTACTCAACTGATACGGAGGATTGGTAGTGTAAATTTTGCCAGTGTA-----------------------AATTATGTTCACTAAAAC-AAAAAAAAGTTC--AGGTTTATTCACAT-ATGTAATAGGAATCA----TTAATT---TTTAAAACGTGTGTGT--------------------------------GTTGCTTGAATTTA-AGCAGTGAGAGAACATTATAGGTCTTTAGTGACCTAAAGACTGTAGGAATCATTGTTCCAACTTTTTTCT-TAAGGCGTGTAGTTGCTTTTTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163464886 529 + 180432695 GTGGTCACAAAATTGGAGTGCCTAAGAATTATGAATGCAGTTAGGAATTTAGGACTGGTGAGT---TGTGCTTTTGCCATAAGAAGTaatg--------------tttctcattttgttttt---ttcctttaggaaGAGCCTAAAGATTAGActgtaaggaaagaaaataga---agccaTGTTTCGAAGACCTGTGTTACAGGT----AGTCACTTGTCTGTATTAATA-----TTGAGATGTATTACTATCAG---CGGTGATCAGAAGACTT----CTTCAGGCTTTTAACTACA--GGGCAAAAGACCTTTGAGCTCACCCACC--CACCTCTATACTCAACTGATATGGAGGATTGGTAGTGTAAATTTTGCCAGTGTA-----------------------AATTATGttcactaaaac-aaaaaaaagttc--aggtTTATTCACAT-ATGTAATAGgaatca----ttaatt---tttaaaacgtgTGTGT--------------------------------GTTGCTTGAATTTA-AGCAGTGAGAGGACATTATAGGTCTTTAGTGACCTAAAGACTGTAGGAATCATTGTTCCAACTTTTTTCT-TAAGGCGTGTAGTTGCTTTTTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110493022 529 + 127223203 GTGGTCACAAAATTGGAGTGCATAAGAATTATGAAGGCAGTTAGGAATTTAGGACTGGTGAGT---TGTGCTTTTGCCATAAGAAGTAATG--------------TTTCTTATTTTGTTTTT---TTCCTTTAGGAAGAGCCTGAAGATTAGACTGTAAGGAAAGAAAATAGA---AGCCATGTTTCGAAGACCCGTGTTACAGGT----AGTCACTTGTCTGTATTAATA-----TTGAGATGTATTACTATCAG---CGGTGATCAGAAGACTT----CTTCAGGCTTTTAACTACA--GGGCAAAAGACCTTTGAGCTCACCCACC--CACCTCTGTACTCAACTGATATGGAGGATTGGTAGTGTAAATTTTGCCAGTGAA-----------------------AATTATGTTCACTAAAAC-AAAAAAAAGTTC--AGGTTTATTCACAT-ATGTAATAGGAATCA----TTAATT---TTTAAAACGTGTGTGT--------------------------------GTTGCTTGAATTTA-AGCAGTGATAGGACATTATAGGTCTTTAGTGACCTAAAGACTGTAGGACTCATTGTTCCAACTTTTTTCT-TAAGGCGTGTAGTTGCTTTTTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23839706 477 - 128169293 GTGGTCGCAGAATTG-------------------------------------------------------CTTTTGCCATAAGATGTAATGTTT-------CTTCTCTCTCTTTTTTTTTTTTTATTCCTTCAGGAACAGCCTAAAGATTAGACTGTAAGAAAAGAAAAT------AGCCATGTTTCGAAGACCTGTATTACAGGT----AGTCACTTGTCTGTATTAGTA-----TTGAGATGTATTACTGTCAGACACAGTGATC---AGACAT----CTTTAGGCTTTTAGCTACAT-GGGCAAAAGACCTGGGAGCTCACCCACC--CACCTCTGTATTCGTTTGATATGGAGGACTGGTGATG--GAATTTTCCAGTATA-----------------------AATTATGCTCAGTAAA---AAAAAAAAGTTG--AGGTTTATTCACATAATGTAATAGGAATCA----TTAATT---TTAAAA-----TGTGT--------------------------------GTTGCTTGAATTTG-ACCAGTGATAGGAGATTAAAGATCTTTAGTGACCTAAGGACTGCAGGAATCATCGTTCCAACTTTTTTCT-TAAGGCATGTAGTTGCTTTTTT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40471943 565 + 149736546 GCGGTTGCAAA--TTGGGTGCACGAGAAGC-TGGACGCGCTTAGG-ATTTAGGACTAGAGAGCATGTGTGTTCTTGATGGATACTGTAGTTTCTTGATTTATCATTTTTCTCTTTTCTTTCT---TTCCTTTAGGAAAAGCCTAAAGATTAGGTTGTAAGA----AAAACAGA---AGCCATGTTTCGAAGACCTGTGTTACAGGT----AGTCACTTTTCTACATTAGTGAGTGCTCCAACCGTGTTTCCATAGTCTATAGCCATGTTTTGTTTTGTTGCTTTTCGATTTTGCATACAT-AAGCACGAGATTCTTACGCCTATCCAGCGTGTTCTATGTGTTTATTTGATGTGGGAGATTCAGAAGG--GATTTtgtgtgtgtgtgtgtttatgtgtgtgtgAAGCTCATAATGTTTACTGAATC-AAAAATGATTTTTAAAGTGTATTCGCAT-ATGTAGTACACCTCA----TGAATTTAATTTAGTAAATATTTGTTAC----------------------------CAGTGCTTAGATCAG-AGTATTCATTTAATTATGTAAGTTATTATT------------------ATCATTTTTGTTTTGCTGtttt-tgagacagccactcatagttaa
i mm10.chr6                C 0 C 0
s canFam3.chr16             52172030 551 -  59632846 ATGGTCGCGAGG-GGGACTGCGTAA-AATTAGGAATGTAGTCGGGACGTTAGGATTAGTGGGT--TTGTGCTCTTGCTCTAAGTGACATC---------------TCTCTCTCTCTCTTTTT---TTCC---AGGGGAAGACCACACACTACACTGTAGGAAAAGCAAATAGA---AGCCATGTTTCGAAGACCCGTATTACAGGTAATCAGTCGCTTCTCCGTGATGGTG-----TTGAGATGCGTTCTCGTCCAGCACAG--GTGATGAGGCTT----CTTCAGGGTTTTGACCTCGGTAGGCGAAGGACCTACGAG-------AGG--GAGATGTGTACTCCTTTGCT----AGGATCAGGGGCA--GATTTCATCTGAGTA-----------------------AATGCTGTTCTCAAAGACAACAAAGGTTTTC--CAGCTT----GCCT-ATATAACGGGAGTCaattttttatt---tttattttttatttatttttttGGGGGGGAGTCAATTTTTTAAAACACGTAACTTGCGTTTACATCAGTTACAGAGCCTTTACTGTCTTGCGTGAGCTAAAGACTAGGAGAGTCAT--TTCCAGCATTCTTCTCTGAGGCATGCGGTTCCtttttt
i canFam3.chr16            C 0 I 147

a score=46632.000000
s hg38.chr7_GL383534v2_alt    112138 16 +    119183 GACCATCT----ACCTCCTG
s panTro4.chr7             143211906 16 + 161824586 GACCATCT----ACCCCCTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139037987 16 + 157549271 GACCATCT----CCCTCTTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93156029 16 + 110113093 GGCCATCT----ACCTCCTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181049614 16 + 198365852 GACCGTCT----ACCTCCTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174797214 16 + 192294377 GACCGTCT----ACCTCCTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163465415 16 + 180432695 GACCGTCT----ACCTCCTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110493551 16 + 127223203 GACCGTTT----ACCTCCTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23840183 16 - 128169293 GACCATCT----CCCTCCTC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40472508 20 + 149736546 gactatcttgagactcactg
i mm10.chr6                C 0 C 0
e canFam3.chr16             52172581 147 -  59632846 I

a score=229579.000000
s hg38.chr7_GL383534v2_alt    112154  78 +    119183 TGTTGCT-----------AAAC---------------------------GTTCCTCTT--------------------CCCCCATCT--TTCCACA-------------CTGAAGAGAGCATCTCAAGTCTCAGTGGTCACCAGAGATTTC
s panTro4.chr7             143211922  78 + 161824586 TGTTGCT-----------AAAC---------------------------GTTCCTCTT--------------------CCCCCATCT--TTCCACA-------------CTGAAGAGAGCATCTCAAGTCTCACTGGTCACCACAGATTTC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139038003  78 + 157549271 TGTTGCT-----------AAAC---------------------------GTTCTTCTT--------------------CCCCCATCT--TTCCACA-------------CTGAAGAGAGCAGCTCAAGTCTCAATGGTCACCATAGATTTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93156045  78 + 110113093 TGTTGCT-----------AAAC---------------------------GGTCCTCTT--------------------CCCGCATGT--TTCCACA-------------CTGAAGAGAGCAGCTCAAGTCTCAGTGGTCACCACAGATTTC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181049630  78 + 198365852 TGTTGCT-----------AAAC---------------------------GTTCCTCTT--------------------CCCCCATCT--TTCCACC-------------CTGAAGAGAGCAGCTCAAGTCTGAATGGTCACCACAGATTTC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174797230  78 + 192294377 TGTTGCT-----------AAAC---------------------------GTTCCTCTT--------------------CCCCCATCT--TTCCACC-------------CTGAAGAGAGCAGCTCAAGTCTGAATGGTCACCACAGATTTC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163465431  78 + 180432695 TGTTGCT-----------AAAC---------------------------GTTCCTCTT--------------------CCCCCATCT--TTCCACC-------------CTGAAGAGAGCAGCTCAAGTGTGAATGGTCACCACAGATTTC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110493567  78 + 127223203 TGTTGCT-----------AAAC---------------------------TTTCCTCTT--------------------CCCCCATCT--TTCCACC-------------CTGGAGAGAGCAGCTCAAGTCTGAATGGTCACCACAGATTTC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23840199  78 - 128169293 TGTTGCG-----------AAAC---------------------------GTTCCTCTT--------------------CCCCCATCT--TTCCACG-------------CTAAAGAGAGCAGCTCACATCTCAGTGGTCACCACAGATTTC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40472528  88 + 149736546 ttaggctgagatgaccaagaac---------------------------cttcctcct--------------------cctgcttctactttgtca-------------ccgatg---gtatttcaggcctgccccatcgcacctgatttC
i mm10.chr6                C 0 I 142
s canFam3.chr16             52172728 133 -  59632846 tggtgct-----------caactgctgagccacccgggctgcccATGGGGTTCCTTTTTTGACCACCGGCCTCCCCCGCCCTCATCT--TTCCACCCCATCTCCCTGTGCTAAGGGCTGCAGCGGAAGTC--AGCCGTCAGCGCAGAT---
i canFam3.chr16            I 147 C 0

a score=175077.000000
s hg38.chr7_GL383534v2_alt    112232 54 +    119183 ACTATGTAGAAAATGCCTTCTCATTCCACTTAGTATGGGTCCTCACTTTTCCAG
s panTro4.chr7             143212000 54 + 161824586 ACTATGTAGAAAATGCCTTCTCATTCCACTTAGTATGGGTCCTCACTTTTCCAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139038081 54 + 157549271 ACTATGTAGAAAATGCCTTCTCATTCCACTTAGTATGGCTCCTCACTTTTCCAG
i ponAbe2.chr7             C 0 I 2
s nomLeu3.chr13             93156123 54 + 110113093 ACTATGTAGAAAATGCCTTCTCATTCCACTTAGTATGGCTCCTCACTTTTCCAG
i nomLeu3.chr13            C 0 I 2
s rheMac3.chr3             181049708 54 + 198365852 ACTATGTAGAAAATGCCTTCTCATTCCACTTAATATGGCTCCTCACTTTTCCAG
i rheMac3.chr3             C 0 I 2
s macFas5.chr3             174797308 54 + 192294377 ACTATGTGGAAAATGCCTTCTCATTCCACTTAATATGGCTCCTCACTTTTCCAG
i macFas5.chr3             C 0 I 2
s papAnu2.chr3             163465509 54 + 180432695 ACTATGTAGAAAATGCCTTCTTATTCCACTTAATATGGCTCCTCACTTTTCCAG
i papAnu2.chr3             C 0 I 2
s chlSab2.chr21            110493645 54 + 127223203 ACTATGTAGAAAATGCCTTCTCATTCCACTTAATATGGCTCCTCACTTTTCCAG
i chlSab2.chr21            C 0 I 2
s calJac3.chr8              23840277 54 - 128169293 ACTATGTAGAAAATTCCTTCTCATTCCACTTAATCTGGCTCCTCACTTTTCCAG
i calJac3.chr8             C 0 I 2
s canFam3.chr16             52172861 37 -  59632846 ----------------GTGCTCCCTCCCACCAGTCTGACTCCTTAGTTCTCCA-
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40472616 142 + 149736546 I

a score=707906.000000
s hg38.chr7_GL383534v2_alt    112286 226 +    119183 ACACTAGCCCACCTTGAGCCAGCTTAGACTACCATTTTTCCTCACTTACCACATTCGGGCACCAGCTCCTGTAGATTCTTCT----TTGG-----CTCTCCTACTCCCCATCCTCCTGTGAAGACCAATGAAGAACCAGTTCCTCCATGAC--TCTGTCATTTTCCCCACCTTAATC--------------CTA--------TATTCTTGGATCCCCACTTTAACCTGTATGTATCTTTAATCTATTTTTTTCTGTATT-
s panTro4.chr7             143212054 226 + 161824586 ACACTAGCCCACCTTGAGCCAGCTTAGACTACCATTTTTCCTCACTTACCACATTCGGGCACCAGCTCCTGTAGATTCTTCT----TTGG-----TTCTCCTACTCCCCATCCTCCTGTGAAGACCAATGAAGAATCAGTTCCTCCATGAC--TCTGTCATTTTCCCCACCGTAATC--------------CTA--------TATTCTTGGATCCCCACTTTAACCTGTATGTATCTTTAATCTATTTTTTTCTGTATT-
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139038137 217 + 157549271 ACTCTAGCCCACCTTGAGCCAGCTTAGACTACCATTTTGCCTTACTTACCACCTTCGGGCACCAACTCCTGTAGA---TTCT----TTGG-----CTCTCCTACTCCCCATCGTCCTGTGAAGACCAATGAAGAATCATTTCCTCCATGA----CTGTCATTTTCCCCACCTTAATC--------------CTA--------TATTCTTGGATCTGCACTTTAACC----TGTATCTTTAATCTATTTTTTTGTGTATT-
i ponAbe2.chr7             I 2 C 0
s nomLeu3.chr13             93156179 226 + 110113093 ACTCTAGCCCACCTTGAACCAGCTTAGACTACCATTTTTCCTCACTTACCACATTCGGGCACCAACTCCTGTAGATTCTTCT----TTGG-----CTCTCCTACTCCCCATCCTCCTCTGAATACCGATGAAGAATCGGTTCCTCCATGAC--TCTGTCATTTTCCCCGCCTTCATC--------------CTA--------TATTCTTGGATCCCCACTTTAACCTGTATGTATCTTTAATCTATTTTTTTCTGTATT-
i nomLeu3.chr13            I 2 C 0
s rheMac3.chr3             181049764 225 + 198365852 ACTCTAGCCCACCTTGAGCCAGTTTAGACTACCGTTTTTCCTCACTTACCACATTTGGGCACCAACTCCTGTAGATTCTTCT----TTGG-----CTCTCCTACTCCCCATCCTCCTGTGAAGATCAATGAAGAATCAGTTCCTCCATGAC--TCTGTCATTTTTCCCACCTTAATC--------------CTA--------TATTCTTGGATCCCCCCTTTAACCTGTATGTATCTTTAATCTA-TTTTTTCTGTATT-
i rheMac3.chr3             I 2 C 0
s macFas5.chr3             174797364 225 + 192294377 ACTCTAGCCCACCTTGAGCCAGTTTAGACTACCATTTTTCCTCACTTACCACATTTGGGCACCAACTCCTGTAGATTCTTCT----TTGG-----CTCTCCTACTCCCCATCCTCCTGTGAAGATCAATGAAGAATCAGTTCCTCCATGAC--TCTGTCATTTTTCCCACCTTAATC--------------CTA--------TATTCTTGGATCCCCCCTTTAATCTGTATGTATCTTTAATCTA-TTTTTTCTGTATT-
i macFas5.chr3             I 2 C 0
s papAnu2.chr3             163465565 225 + 180432695 ACTCTAGCCTACCTTGAGCCAGCTTAGACTACCGTTTTTCCTCACTTACCACATTTGGGCACCAACTCCTGTAGATTCTTCT----TTGG-----CTCTCCTACTCCCCATCCTCCTGTGAAGATCAATGAAGAATCAGTTCCTCCATGAC--TCTGTCATTTTTCCCACCTTGATC--------------CTA--------TATTCTTGGATCCCCCCTTTAACCTGTATGtatctttaatcta-ttttttctgtatt-
i papAnu2.chr3             I 2 C 0
s chlSab2.chr21            110493701 223 + 127223203 ACTCTAGCCCACCTTGAGCCAGCTGAGACTACCGTTTTTCCTCACTTACCACATTTGGGCACCACCTCCTGTAGATTCTTCT----TTGG-----CTCTCCTACTCCCCATCCTCCTGTGAAGATCAATGAAGAATCAGTTCCTCCATGA----CTGTCATTTTTCCCACCTTAATC--------------CTC--------TATTCTTGGATCCCCCCTTTAACCTCTATGTATCTTTAATCTA-TTTTTTCTGTATT-
i chlSab2.chr21            I 2 C 0
s calJac3.chr8              23840333 216 - 128169293 ACTCTAGCCCACCTTGAGCCAGCTTAGACTACCATTTTTCCTC----AACACATTTGGGCACCAAATTCTT--AATCATACT----T--------CTCTCCTACTCCCTATCCTTCTGTGAAGACCATTGAAAAATCAGTTCCTCCATGAT--GCTATCATTTTCCCCACCATAATC--------------TTA--------TATTCTTGGATCCCCTCTTTAACCTATATGTATCTTTAATCTA-ATTTTTCTGTATT-
i calJac3.chr8             I 2 C 0
s mm10.chr6                 40472758 222 + 149736546 ACTCTAGCCAGCCTTAAGCAGGCCTTAATTACCATTTTTCCTCAGT-GTGGCACGTGGGTACCAAGTCTTGTAAATTCTCCTAATGTAAA-----ATCTATTACTTTTC-TTCTCCTCTTAAGACTAATG---AGTCAAATTCGTTATAAAAGTCTGTTGTCTTCCCCATCCTACTC--------------TTAAGTTGGTCTATCCTTAGCTCCTTACTGTAATCCACACATACTCTGAGCCTT-T-------------
i mm10.chr6                I 142 C 0
s canFam3.chr16             52172898 230 -  59632846 -----AGCCCTCC----ACCAGCCCAAACCACTTGTTTCCCTCACTTAA---GTCTGGGCACCAAGT-TTATAGGTTCTGGT----TTGTAACACCTCTCTTAGTCCCCA---TCCTGTTAAGACTGGTGAAGAATCAATTCCTCTCTGAAA-CCTGTTCTCATGTCTCCCCCAGTCTGCTGTAGAATTGACTC--------TGTATTTGGATCTTCACTTTAACCTACACATCTGTTTAGCAGC-TTTTTTTTTTTTTT
i canFam3.chr16            C 0 I 704

a score=1122574.000000
s hg38.chr7_GL383534v2_alt    112512 377 +    119183 GAAATGTGAAACATGAAAAAGTTATTGCTTCT---TAACACTAACGTTACAGTATTAAAATGTCTTT-------AAATAAGAGTTAAAAGTTTAATTTAAAAAATTATCCAAGTTAAATAATCCTTTCCTAA-----TCTTCTCCAG------TAGATTTTTGTGTGCCCCAAATGAGAC--ATTGTTATTATAAATCTCTGTGTAAGATTT-ATGAGGTCTAGCTTGTCTGAG-CACTCAAATG---ACATTTCCAGAATCATGACACAGGTTCTCATTAGCAGTTTGATTCTATAGTATG-----TTGTACTCATATCTTTATTTTCTTATCTGCCCTCTGCTCCTAAGTTTAGTGATAGGATTAGATAGCCAACAGCACCCTGGGGATTGGTGTTTATTTGATTGGT
s panTro4.chr7             143212280 377 + 161824586 GAAATGTGAAACATGAAAAAGTTATTGCTTCT---TAACGCTAACGTTACAGTATTAAAATGTCTTT-------AAATAAGAGTTAAAAGTTTAATTTAAAAAATTATCCAAGTTAAATAATCCTTTCCTAA-----TCTTCTCCAG------TAGATTTTTGTGTGCCCCAAATGAGAC--ATTGTTATTATAAATCTCTGTGTAAGATTT-ATGAGCTCTAGCTTGTCTGAG-CACTCAAATG---ACATTTCCAGAATCATGACACAGGTTCTCATTAGCAGTTTGATTCTATAGTATG-----TTGTACTCATATCTTTATTTTCTTATCCGCCCTCTGCTCCTAAGTTTAGTGATAGGATTAGATAGCCAACAGCACCCTGGGGATTGGTGTTTATTTGATTGGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139038354 384 + 157549271 GAAATGTGAAACATGAAAAAGTTATTACTTCTTAATAACACTAACGTTACAGTATTAAAATGTCTTT-------AAATAAGAGTT--AAGTTTAATTTAAAAAATTATCCAAGTTAAATAATCCTTTCCTAA-----TCTCCACTAG---GTCTTGATTTTTGTGTGCCCCAAATGAGAC--ATTGTTATTATAAATCTCTGTGTAAGATTT-ATGAACTCTAGCTTGTCTGAG-CACTCAAATGAGTACATTTCCGGAATCATGACACAGGTTCTCGTTAGCAGTTTGATTCTATAGTATG-----TTGTACTCATATCTTTATTTTCTTATCCACCCTCTGCTTCTAAGTTTAGTGATAGGATTAGATAGCCAACAGCACCCTGGGAATTGGTGTTTATTTGATTGGT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93156405 389 + 110113093 GAAATGTGAAACATGAAAAAGTTATTACTTCTTAATAACACTAATGTTAAAGTATGAAAATGTCTTT-------AAATAAGAGTTAAAAGTTTAATTTAAAAAATTTTCCAAGTTAAATAATCCTTTCCTAA-----TCTTCTCCAGTAGGTCTTGATTTTTGTGTGCCCCAAATGAGAC--ATTGTTATTATAAATCTCTGTGTAAGATTT-ATGAGCTCTAGCTTGTCTGAG-CACTCAAATGAGTACATTTCCAGAATCATGACACAGGTTCTCATTAGCAGTTTGATTCTATAGTATG-----TTGTACTCATATCTTTATTTTCTTATCCACCCTCTGCTCCTAAGTTTAGTGATAGGATTAGATAGCCAACAGCACCCTGGGAATTGGTGTTTGTTTGGTTGGT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181049989 373 + 198365852 GAAATGTGAAACATAAAAAAGTTATTACT------TAACACTAATGTTACAGTATTAAAATGTCTTT-------AAATAAGAGTTAAAAGTTTAATTTTAAAAAGTATCCAAGTTAAATAATCCTTTCCTAA-----TCTTTTCCAGTAGGCTTTGATTTTTGTGTGCCCCAAATGAGAC--ATTGTTATCA----------TGTAAGATTT-ATGAGCTCTTGCTTGTCTGAG-CACTGAAATGAGTACATTTCCAGAATCATGACACAGGTTCTCATTAGCAGTTTGATTCTATAGTATG-----TTGTACTCATATCTTTATTCCCTTACCCACACTGTGCCCCTAAGTTTAGTGATAGGATTAGATAGCCAACAGCACCCTGGGAATTGGTGTTTATTTGATTGGT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174797589 373 + 192294377 GAAATGTGAAACATAAAAAAGTTATTACT------TAACACTAATGTTACAGTATTAAAATGTCTTT-------AAAtaagagttaaaagtttaattttaaaaagtatccaagttaaaTAATCCTTTCCTAA-----TCTTTTCCAGTAGGCTTTGATTTTTGTGTGCCCCAAATGAGAC--ATTGTTATCA----------TGTAAGATTT-ATGAGCTCTTGCTTGTCTGAG-CACTGAAATGAGTACATTTCCAGAATCATGACACAGGTTCTCATTAGCAGTTTGATTCTATAGTATG-----TTGTACTCATATCTTTATTCTCTTACCCACACTGTGCCCCTAAGTTTAGTGATAGGATTAGATAGCCAACAGCACCCTGGGAATTGGTGTTTATTTGATTGGT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163465790 373 + 180432695 GAAATGTGAAACATAAAAAAGTTATTACT------TAACACTAATGTTACAgtattaaaatgtcttt-------aaataagagtgaaaagtttaattttaaaaagtatccaaGTTAAATAATCCTTTCCTAA-----TCTTTTCCAGTAGGCTTTGATTTTTGTGTGCCCCAAATGAGAC--ATTGTTATCA----------TGTAAGATTT-ATGAGCTCTTGCTTGTCTGAG-CACTGAAATGAGTACATTTCCAGAATCATGACACAGGTTCTCATTAGCAGTTTGATTCTATAGTATG-----TTGTACTCATATCTTTATTCTCTTACCCACACTGTGCCCCTAAGTTTAGTGATAGGATTAGATAGCCAACAGCACCCTGGGAATTGGTGTTTATTTGATTGGT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110493924 373 + 127223203 GAAATGTGAAACATAAAAAAGTTATTACT------TAACACTAATGTTACAGTATTAAAATGTCTTT-------AAAtaagagttaaaagtttaattttaaaaagtatccaagttaaaTAATCCTTTCCTAA-----TCTTTTCCAGTAGGCTTTGATTTTTGTGTGCCCCAAATGAGAC--ATTGTTATCG----------TGTAAGATTT-ATGAGCTCTTGCTTGTCTGAG-CACTGAAATGAGTACATTTCCAGAATCATGACACAGGTTCTCATTAGCAGTTTGATTCTATGGTATG-----TTGTACTCATATCTTTATTCTCTTACCCACACTGTGCCCATAAGTTTAGTGATGGGATTAGATAGCCAACAGCACCCTGGGAATTGGTGTTTATTTGATGGGT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23840549 370 - 128169293 GAAATGTGAAACATGAAAAAGTTATTATTTTTCAATAACACTAATGTTACAGTATT-AAATGTCTTT-------GAATAAAAGTCAAAAGTTTAATTAAAAAAATTATCC-----AAATAATTCTTTCCTAA-----TCTTCTCCAG---GTCTTGATTTTTGTGTGCCCAAAATGAGAC--ATTGTTATTG----------TGTAAGATTT-ATGAGGTCTAGCTTGTCTGAG-CACTCAAATGAGTACATTCCCAGAATCATGACACAGGTTCTAGTTAGCAGTTTGATTCTATAGAATG-----TTGTACTCATATCTTTATCTTCTTATCAACCCTCTGCCCCTGAGTTTAGTGATAGAATTAAATAGCCAGCAGTACCCAGGGAGTTGGTGTTTGTTTGATTGGT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40472980 323 + 149736546 -----------------------------------TAAAATTGAAGTTATACTAT---AGTATCTTTTTAAACCAAATGGGAAGT--AAGTTTGCATTTTGAGGGTAT-----TGAAATAATCCTCTCCCTATTTCTTCTTTTCTACTAGATT---ATGTGTATGTTCCTAAGATGAGGCATATTGTTATTT----------TATAACATTTAATGAACACTGGCTCTTCTGAATCTGTCACATTAGTAT-TTTCTGTGATCGTGACAAAGGAACTGAGTAGCATTTTGGTCCTGTATCGTGTAACATCTTATTCTTATATTTATTC-------------------------TTAGTGATAG---TATATAGCTAAAATCACTCCAGGAAAAGGTGTTCATTTGAGTGGT
i mm10.chr6                C 0 I 386
e canFam3.chr16             52173128 704 -  59632846 I

a score=815679.000000
s hg38.chr7_GL383534v2_alt    112889 270 +    119183 GGACTTCTGCTTTTTATATTAACAGTACTGCCACTTCAAAAATGTTTCTCTGATAGA--ATGGCTAGCTCTCTGAGCTC---TGAATTCAGTGATGTGTAC---TCCCATCTTTACAGGAGCTCTTGAAATTAAGg------aggcagcagagggc--ttcgggaaagcagtagcattggtgtc-aagggccctgggtccttgag--atcacttgccacatacttcctgcaggagcttgggcaggtgatgcagtctctctgagg-tg--ttttctcagcccta-aatgggaat
s panTro4.chr7             143212657 271 + 161824586 GGACTTCTGCTTTTTATATTAACAGTACTGCCACTTCAAAAATGTTTCTCTGATAGA--ATGGCTAGCTCTCTGAGCTC---TGAATTCAGTGATGTGTAC---TCCCATCTTTACAGGAGCTCTTGAAATTAAGg------aggcagcagagggc--tttgggaaagcagtagcattggtgtcaaagggccctgggtccttgag--atcacttgccacatacttcctgcaggagcttgggcaggtgatgcagtctctctgagg-tg--ttttctcagcccta-aatgggaat
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139038738 265 + 157549271 GGACTTCTGCTTTTTATATTAACAGTACTGCC-CTTCAAAAATGTTTCTCTGATAGA--ATGGCTAGATCTCTGAACTC---TGAATTCAGTGATGTCTAC---TCCCATCTTTACAGA------TGAAATTAAGg------aggcagcagagggc--tttgggaaagcaggagcattggtgtcaaaaggccctgggtccttgag--atcacttgccacatacttcctgcaggatcttgggcaggttatgcagtctctctgcggttg--ttttctcagctcta-aatgggaat
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93156794 258 + 110113093 GGAC--------------TTAACAGTACTGCCACTTCAAAAATGTTTCTCTGATAGA--ATGGCTAGCTCTCTGAACTC---TGAATTCAGTGATGTGTAC---TCCCATCTTTACAGTAGCTCTTGAAATTAAGg------aggcagcagagggc--tttgggaaagcagtagcattggtgtcaaagggccctgggtccttgag--atcacttgccacatacttcctgcaggatcttgggcaggttatgcagtctctctgaggctg--ttttctcagctcta-aatgggaat
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181050362 270 + 198365852 GGGCTTCTGCTTTTTATATTAACAGTACTGCCACTTCGAAAATGTTTCTCTGATAGA--ATGGCTAGCTCTCTCAACTC---TGTATTCAGTGATGTGTAC---TCCCATCTTTACAGTAGCTCTTGAAATTcagg------aggcagcaaggggc--tttgggaaagtagtagcattggtgtcaaagggcct--gggccttgag--atcactcgccacatacttcctgcgggatcttgggcaggttatgcagtctctccgaggttg--ttttctcagctcta-agtggggat
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174797962 270 + 192294377 GGGCTTCTGCTTTTTATATTAACAGTACTGCCACTTCGAAAATGTTTCTCTGATAGA--ATGGCTAGCTCTCTCAACTC---TGTATTCAGTGATGTGTAC---TCCCATCTTTACAGTAGCTCTTGAAATTcagg------aggcagcaaggggc--tttgggaaagtagtagcattggtgtcaaagggcct--gggccttgag--atcactcgccacatacttcctgcgggatcttgggcaggttatgcagtctctccaaggttg--ttttctcagctcta-agtggggat
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163466163 270 + 180432695 GggcttctgctttttattttaacagtACTGCCACTTCGAAAATGTTTCTCTGATAGA--ATGGCTAGCTCTCTCAACTC---TGTATTCAGTGATGTGTAC---TCCCATCTTTACAGTAGCTCTTGAAATTCAGG------AGGCAGCAAGGGGC--TTTGGGAAAGTAGTAGCATTGGTGTCAAAGGGCCT--GAGCCTTGAG--ATCACTCGCCACATACTTCCTGCGGGATCTTGGGCAGGTTATGCAGCCTCTCCGAGGTTG--TTTTCTCAGCTCTA-AGTGGGGAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110494297 270 + 127223203 GGGCTTCTGCTTTTTATATTAACAGTACTGCCACTTCGAAAATGTTTCGCTGATAGA--ATGGCTAGCTCTTTCAACTC---TGAATTCAGCGACGTGTAC---TCCCATCTTTACAGTAGCTCTTGAAATTcagg------aggcagcaaggggc--tttgggaaagtagtagcattggtgtcaaagggcct--gggccttgag--atcactcgccacatacttcctgcgggatcttgggcaggttatgcagtctctctgaggtgg--ttttctcagctcta-agtggggat
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23840919 270 - 128169293 AGACTTGTGCTTTTTGTATTAACAGTATTGCCACTTTGAAAATGTTTATCTGATAGA--ATGGGTAGCTCTCTGAACTC---TGAAATCAGTGATGTGTAC---TCCTATCTTTACAGTAGCTCTTGAAATTAAGg------aggcagcagagggc--tttgggaaagcagtaac--tggtgtcagagggccctgggtccttgag--agcacttgccacctacttcctgcaggatcttgggcaggttctgcagtctctctgaggttg--ttttctcagctcta-aatggggat
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40473689 284 + 149736546 GGATCCCTGCCTGCTATATTAACAATGCTGCCACGTGCGAAATGTTTCTCTCTTAGAACATGTCTAGCTCTCTGAACTCTCTTGTGTGTAGTGATGTAGACTCTTCTTACCTGCGTGGTAACCATAGAACAGAATGCCTGTAAGACAGCAGAGGGCAAATTGGAAAAACA--AGC-TTGGTGCCACACAGCCC-GGAGTTGTAAGGCATAAATCACCACTGAATTCCT--AGTTTCCTGGACAAGTGGTGA---CTCTCTGGGCTTAACTTTCCTTGGAACTATGGTAAGGGT
i mm10.chr6                I 386 C 0
e canFam3.chr16             52173128 704 -  59632846 I

a score=673219.000000
s hg38.chr7_GL383534v2_alt    113159 224 +    119183 aattt-----------tacataacttgtagatttagttttagaattg----ataatagataaatcccttagcTGATATTCAGTAATGAT----------------TGCTGCTATTATGTGGTAGTGACTACCTT-TGCTGACAGTGA-TGTGACTTTGACTTGGACAGTCGAGTCTTTGTGTTTAATCAAAGAACCAAATTTA--------TTAGACC----TTTTTTGATGCACTAAAAACAGGAAATTTCCTATGAAATATTTATAA
s panTro4.chr7             143212928 224 + 161824586 aattt-----------tacataacttgtagatttagttttagaattg----ataatagataaatcccttagcTGATATTCAGTAATGAT----------------TGCTGCTATTATGTGGTAGTGACTACCTT-TGCTGACAATGA-TGTGACTTTGACTTGGACAGTCGAGTCTTTGTGTTTAATCAAAGAACCAAATTTA--------TTAGACC----TTTTTTGATGCACTGAAAACAGGAAATTTCCTATGAAATATTTATAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139039003 222 + 157549271 aattt-----------tacataacttgtagatttagttttagaattg----ataatagataaatcccttagcTGATATTCAGTAATGAT----------------TGCTGCTATTATGTGGTAGTGACTACCTT-TTCCAACAATGA-TGTGAC--TGCCTTGGACAGTCGAGTCTTTGTGTTTAATCAAAGAATCAAATTTA--------TGAGACC----TTTTCTGATGCATTGAAAACATGAAATTTCCCATGAAATATTTATAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93157052 224 + 110113093 aattt-----------tacataacttgtagatttagttttagaattg----ataatagataaatcccttagctgatactcagtaaTGAA----------------TGCTGCTATTATGTGGTAGTGACTACCTT-TTCCGACAATGA-TGTGACTTTGACTTGGACAGTCGAGTCTTTGTGTTTAATCAAAGAACCAAATTTA--------TTAGACC----TTTTTTGATGCACTGAAAACATGAAATTTCCCATGAAATATTTATAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181050632 220 + 198365852 aattt-----------tacataacttgtagatttagttttataattg----attatagataaATCTCTTAGCTGAT----AGTAACCAT----------------TGCTGCTATTATGTGGTAGTGACTACCTT-TTCCGACAATGA-TGTGATTTTGACTTGGACAGTCGAATCTTTGTGTTTAATCAAAGAACCAAATTTA--------TTAGACC----TTTTCTGATGCACTGAAAGCATGAAATTTCCCATGAAATATTTATAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174798232 220 + 192294377 aattt-----------tacataacttgtagatttagttttataattg----attatagataaATCTCTTAGCTGAT----AGTAACCAT----------------TGCTGCTATTATGTGGTAGTGACTACCTT-TTCCGACAATGA-TGTGCTTTTGACTTGGACAGTCGAATCTTTGTGTTTAATCAAAGAACCAAATTTA--------TTAGACC----TTTTCTGATGCACTGAAAGCATGAAATTTCCCATGAAATATTTATAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163466433 220 + 180432695 AATTT-----------TACATAACTTGTAGATTTAGTTTTATAATTG----ATAATAGATAAATCTCTTAGCTGAT----AGTAACCAT----------------TGCTGCTATTATGTGGTAGTGACTACCTT-TTCCGACAATGA-TGTGATTTTGACTTGGACAGTCGAATCTTTGTGTGTAATCAAAGAACCAAATTTA--------TTAGACC----TTTTCTGATGCACTGAAAGCATGAAATTTCCcatgaaatatttatag
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110494567 224 + 127223203 aattt-----------tacataacttgtagatttagttttataattg----ataatagataaatctcttagcTGATAGTCAGTAACCAT----------------TGCTGCTATTATGTGGTAGTGACTACCTT-TTCCGACAATGA-TGTGATTTTGACTTGGACAGTCGAATCTTTGTGTTTAATCAAAGAACCAAATTTA--------TTAGACC----TTTTCTGATGCACTGAAAGCATGAAATTTCCCATGAAATATTTATAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23841189 214 - 128169293 aatTT-----------TAC-----------ATTTAGTTTTAGAATTG----ATAATAGATAAATTTCTTAGCTGATATTCGGTAATGAT----------------TGTTGCTATTACGTGGCAGTGACTCCCTT-TTCTGACGATGA-TAGGACTTTGACTTGGACAGTCGAATCTTTGTGTTTAAGCAAAGAACCAAATTTA--------TTAGACC---TTTTTTTGATGCACTGAAGGAATGAAATTTCCCACGAAATATTTATAG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40473973 167 + 149736546 AATTTGACTTTGTGTCTACAAAAGTTAAGGATTAAATGGTAAAAGTG------------TAATTTGTTTAG---------------------------------------------TGTGTTAAGAGCTGCATT-CTTCTTCACTAATTATGATTTC-------ATTGCCATACCTTT-------------GAACCATATTAT--------TTGTACTCCTTTTCTGTGATCTCCTCAAGGAATGAGGTTTCC----------------
i mm10.chr6                C 0 C 0
s canFam3.chr16             52173832 247 -  59632846 AGTTT-----------TGCATAGTTCATAGATTTATTCCAAGGACTGGTTTGTAAGAGGTAAAGCACTTAGCTGGTGTTCAGTAGTGATGGCTTATGTCACTGAATGTTGCTACTTTGTGTCAGGTACTACCTTCCTCTGACA--GA-C-------TGACTTGACTAGTCCCATTTTTGTATTTTATCAGTGAATCAGATTTGTCTCTATCTTAGACT-TTTTTCTTTGCTCCGTCAAAAGCATGATTTTTTTTCCAACACATATATGA
i canFam3.chr16            I 704 I 1

a score=584086.000000
s hg38.chr7_GL383534v2_alt    113383 183 +    119183 AAACTGTATTAGGCTAAGCTCACTACTGAAGCTGtttaatttttgcaatagccttgtgaagtaggtattatgtatcataattttTGCTTATTTTAAAATGAAACACTTTAGATTAGTCATATT--AGGTATCCTAATTCCTTTTAAGGTCTGAAGGAGCAACCAGGGGAAGGCAGTTTCATAGAC
s panTro4.chr7             143213152 183 + 161824586 AAACTGTATTAGGCTAAGCTCACTACTGAAGCTGtttaatttttgcaatagccttgtgaagtaggtattatgtatcataattttTGCTTATTTTAAAATGAAACACTTTAGATTAATCATATT--AGGTATCCTAATTCCTTTTAAGGTCTGAAGGAGCAACCAGGGGAAGGTAGTTTCATAGAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139039225 182 + 157549271 AAACTGTATTAGTCTAAGCTCACTACTGAAGCTGTTTAATTTTTGCAATAGCCTTGTGAGTTAGATATTATGTATCATAATTTTTGCTTATTTTAAAATGAAACACTTTAGATTAATCATATT--AGGTATCCTAATTCCTTTTAAGGTCTGAAGGAGCAACCA-GGGAAGGCAGTTTCATAGAC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93157276 183 + 110113093 AAACTGTATTAGGCTAAGCTCACTACTGAAGCTGtttaatttttgcaatagccttgtgaagtagatattatgtatcataattttTGCTTATTTTAAAATGAAACACTTTAGATTAATCATATT--AGGTATCCTAATTCCTTTTAAGGTCTGAAGGAGCAACTAGGGGAAGGCAGTTTCATAGAC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181050852 185 + 198365852 AAATTGTATTAGGCTAAGCTCACTACTGAAGCTGTTTAATTTTTGCGATAACCTTGTGAAGTAGATATTACCTATCATAATTTTTGCTGATTTTAAAATGAAACACTTTAGGTTAATCATATTTGAGGCATCCTAATTCCTTTTAAGGTCTGAAGGAGCAACCGGGGGAAGGCAGTTACATAGAC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174798452 185 + 192294377 AAATTGTATTAGGCTAAGCTCACTACTGAAGCTGTTTAATTTTTGCGATAACCTTGTGAAGTAGATATTACCTATCATAATTTTTGCTGATTTTAAAATGAAACACTTTAGGTTAATCATATTTGAGGCATCCTAATTCCTTTTAAGGTCTGAAGGAGCAACCGGGGGAAGGCAGTTACATAGAC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163466653 185 + 180432695 aaattgtATTAGGCTAAGCTCACTACTGAAGCTGTTTAATTTTTGCGATAACCTTGTGAAGTAGATATTACCTATCATAATTtttgctgattttaaaatgaaacactttAGGTTAATCATATTTGAGGCATCCTAATTCCTTTTAAGGTCTGAAGGAGCAACCGGGGGAAGGCAGTTACATAGAC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110494791 185 + 127223203 AAATTGTATTAGGCTAAGCTCACTACTGAAGCTGTTTAATTTTTGCGATAACCTTGTGAAGTAGATATTACCTATCATAATTTTTGCTGATTTTAAAATGAAACACTTTAGGTTAATCATATTTGAGGCATCCTAATTCCTTTTAAGGTCTGAAGGAGCAACCGGGGGAAGGCAGTTACATAGAC
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23841403 185 - 128169293 AAACTGTATTAGGCTAAGTTCACTACAGAAGCTGTTTAATTTTTGAAACAGCCTTATGAAGTAGATATTGACTATCATAGTTTTTGCTTATTTTGAAATGAAACACTTTAGGTTAATCATTTTTGATGTATCCTAATTCCCTTAAAGTTCTGAAGGAGCAACCAGGGGAAGGCAGTTTCATAGAC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40474140 171 + 149736546 -------ACTGCGCCAAGCTCACTA-AGAAGCTGCTGACCTTCTGTAGCAGCCTCACGAAATCAGTGCTCT---TCATTGTCAGTGCTCACTCTTAGATGGAACATTCTAGGCCAAACATTTG--AGATGTCC-ATTTCCTTATGGTTTTTGAACAACCAATCAGAAAAAAAATGTATTATAGAC
i mm10.chr6                C 0 I 229
e canFam3.chr16             52174079   1 -  59632846 I

a score=2559020.000000
s hg38.chr7_GL383534v2_alt    113566 886 +    119183 ACAGGGAATCTGACTTTGGAATATGTTCCTGTTGCTGTGTCAGAAAGTCATTCATGTGATTAGTTTTAGAATGTATTGTTTTGTTGGAATGTAACCTATCTCTCGTTCTCTAAACcagcagaccccaacctttttggcactgataactggtttcatggaagacaatttttccatggaggaggggggtgccgtggggatggtttcaagatgaaactgttccacctcagatcatcaggcattagttagattctca--taaggagtgcacaccctagatccctcgcatgagcggtttataatggggttc-tgctcctgtgagaatctaatgccactgctgatctgacaggaggcggatcttggtcagtaatgcttgctcgctgcttgctgctcacctcctgctgtgcagccaggttcctaacaggccacagaactctactagtcctcagccctggaggttggggactcTCCTCT-AACTGGCTGTTCGTTATGCCTGAGAGTAAGGCT------------TTGCATTTATTCCACACCTCCTGACACTTGTTTGATCATTGCATATGTTATTAATGAATCTACTTATTAAATTATTAATTATAAAGCATCTCTTTTAAC-TCTCCTTTGGTCTAATGATGGATTAAATCAGTACCCATGTTGGATCTAAATTTCTTAATTTCTAAAGTCTACTGTAACCAAAATACAGTAGTAATATACCAGTTGTTTATACT-------AAAAAAAAAAATTAGAGGATGTATATATTGA--ATATATGTAGTACTTTTTGTCTCTTTTTGTCTTTCCAGCTAATGAAAGCTGGATTTTGAAAATACTTGGCAGCAACTCTTAGGTACAGGTTGGATTTACAAATATTATCATACTCTGTAATGTTAAAGTGATACTATTTTGA
s panTro4.chr7             143213335 884 + 161824586 ACAGGGAATCTGACTTTGGAATATGTTCCTGTTGCTGTGTCAGAAAGTCATTCATGTGATTAGTTTTAGAATGTATTGTTTTGTTGGAATGTAACCTATTTCTCGTTCTCTAAACcagcagaccccaacctttttggcaccgataactggtttcatggaagacaatttttccatggaggaggggggtgccgtggggatggtttcaagatgaaactgttccacctcagatcatcaggcattagttagattctca--taaggagtgcacaccctagatccctcgcatgagcaatttataatggggttc-tgctcctgtgagaatctaatgctactgctgatctgacaggaggcggatcttggtcagtaatgcttgctcgctgcttgctgctcacctcctgctgtgcagccaggttcctaacaggccacagacctctactagtcctcagccctggaggctggggactcTCCTCT-AACTGGCTGTTCGTTATGCCTGAGAGTAAGGCT------------TTGCATTTATTCCACACCTCCTGACACTTGTTTGATCATTGCATATGTTATTAATGAATCTACttattaaattattaattataaaGCATCTCTTTTAAC-TCTCCTTTGGTCTAATGATGGATTAAATCAGTACTCATGTTGGATCTAAATTTCTTAATTTCTAAAGTCTACTGTAACCAAAATACAGTAATAATATACCAGTTGTTTATACT---------AAAAAAAAATTAGAGGATGTATATATTGA--ATATATGTAGTACTTTTTGTCTCTTTTTGTCTCTCCAGCTAATGAAAGCTGGATTTTGAAAATACTTGGCAGCAACTCTTAGGTACAGGTTGGATTTACAAATATTATCATACTCTGTAATGTTAAAGTGATACTATTTTGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139039407 885 + 157549271 ACGGGGAATCTGACTTTGGATAATGTTCCTGTTGCTGTGTCAGAAAGTCATTCATGTCATTAGTTTAATAATGTATTGTTTTGTTGGAATTTAACCTATTTCTCGTTCTCTAAACcagcagaccccaacctttttggcaccaataactggtttcatggaagacaatttttccatggaggaggggggtgccgcggggatggtttcaagatgaaactgttccacctctgatcaacagacattagttagattctca--taaggagtgcacaacctagatccctcgcatgagcagtttataatggggttc-tgctcctgtgagaatctaatgccgctgctgatctgacaagaggcggatctcggtcagtaatgcttgctcgctgcttgccgctcacctcctgctgtgcagccaggttcctaacaggccacagacctctactagtcttcggccctggaggttggcgacccTCCTCT-AACTGGCTGTTCGTTATGCCTGAGAGTGAGGCT------------TTGCATTTATTCCACACCTCCTGACACTTGTTTGGTCATTGCATATGTTATTAATGAATCTACttattaaattattaattataaaaCATCTCTTTTAAC-TCTCCTTTGGTCTAATGATGGATTAAATCAGTACCCATGTTGGATCTAAATTTCTTAATTTCTAAAGTCTACTATAACCAAAATATAGTAATAATATACCAGTTATTTACACT--------AAAAAAAAAATTAGAGGATGTATATATTAG--ATATATGTAGTACTTTTTGTCTCTTTTTGTCTCTCCAGCTAATGAAAGCTGGATTTTGAAAATACTTGGCAGCAACTCTTAGGTACAGGTTGGATTTACAAATATTATCATACTCTGTAATGTTAAAGTGATACTATTTTGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93157459 887 + 110113093 ACAGGGAATCTGACTTTGGAGTATGTTCCTTTTGCTGTGTCAGAAAGTCATTCATGTGATTAGTTTAAGAATGTATTGTTTTGTTGGAATTTAACCTATTTCTTGTTCTCTAAACcagcagaccccaacctttttggcaccaataactggtttcatggaagacaatttttccatagaggatgggggtgccgcggggatggtttcaagatgaaactgttccacctcagatcatcaggcattagttagattctcatttaaggagtgcacaacctagatccctcgaatgagcagtttataatggggttc-tgctcctgtgagaatctaatgccactgctgatctgacaggaggcggatctcggtctgtaatgcttgctcgctgcttactgctcacctcttgctgtgcagccaggttcctaacaggccacagacctctactagtcctcggccctggaggttggggactcttCTCT-AACTGGCTGTTCATTATGCCTGAGAGTGAGGCT------------TTGCATTTATTCCACACCTCCTGACACTTGTTTGATCATTGCATATGTTATTAATGAATCTACTTATTAAATTATTAATTATAAAACATCTCTTTTAAC-TCTCCTTTGGTCTAATGATGGATTAAATCAGTACCCATGTTGGATCTAAATTTCTTAATTTCTAAAGTCTACTGTAACCAAAATATAGTAATAATATACCAGTTGTTTATACT--------AAAAAAAAAATTAGAGGATATATATATTGG--ATATATGTAGTACTTTTTGTCTCTTTTTGTCTCTCCAGCTAATGAAAGCTGGATTTTGAAAATACTTGGCAGCAACTCTTAGGTACAGGTTGGATTTACAAATATTATCATACTCTGTAATGTTAAAGTGATACTATTTTGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181051037 876 + 198365852 ACAGGGAATCTGACTTTGGAATATGTTCCTGTTGCTGTGTCAGAAAGTCCCTCATGTGGTTAGTTCAAGAATGTATTGTTTTATTGGGATTTAACCTATTTCTCATTCTCTAAACcagcagaccccaacctttttggcaccagtaactggtttcacggaagacaatttttccctggaggaggcgggtgccgcggggatggtttgaggatgaaacttttctacctcagatcatcaggcattagttagattctca--tgagcagtgcacagcctcgatccctcgcatgagcagtttataatggggttcgcactcctatgagaatctaatgcccctgctcatctgacaggaggcggatc----tcagtaatgcttgctcactgcttgccgctcacctcctgctgtgcagccgggttcctaacaggctacagacctctactagtccttgacccgggaggctggggatccTCCTCTAAACTAGCTCATTGTTATGACTGAGAGTGAGGCT------------TTGCATTTATTCCACACCTCCTGACACTTGTTTGATCATTGCGTATGTTATTAATGAATCTACttattaaattattaattataaaaCATCTCTTTTTAC-TCTCCTTTGGCCTAATGATGGATTAAATCAGTACCCATGTTGGATCTAAATTTCTTAATTTCTAAAGTCTACTGTAACCAAAATATAGTAATAATATAGCAGTTGTTTATACT-----AAAAAAAAAAAAATTAGAGGATGTATATATTGG--ATATATATAGTACTTTTTGTCTC----------TCCAGCTAATGAAAGCTGGATTTTGAAAATACTTGGCAGCAACTCTTAGGTACAGGTTGGATTTACAGATATTATCATACTCTGTAATGTTAAAGTCATATTATTTTGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174798637 877 + 192294377 ACAGGGAATCTGACTTTGGAATATGTTCCTGTTGCTGTGTCAGAAAGTCCCTCATGTGGTTAGTTCAAGAATGTATTGTTTTATTGGGATTTAACCTATTTCTCATTCTCTAAACcagcagaccccaacctttttggcaccagtaactggtttcacggaagacaatttttccctggaggaggcgggtgccgcggggatggtttgaggatgaaacttttctacctcagatcatcaggcattagttagattctca--taagcagtgcacagcctagatccctcgcatgagcagtttataatggggttcgcactcctatgagaatctaatgcccctgctgatctgacaggaggcggatc----tcagtaatgcttgctcactgcttgccgctcacctcctgctgtgcagccgggttcctaacaggctacagacctctactagtccttgacccgggaggctggggatccTCCTCTAAACTAGCTCATTGTTATGACTGAGAGTGAGGCT------------TTGCATTTATTCCACACCTCCTGACACTTGTTTGATCATTGCGTATGTTATTAATGAATCTACTTATTAAATTATTAATTATAAAACATCTCTTTTTAC-TCTCCTTTGGCCTAATGATGGATTAAATCAGTACCCATGTTGGATCTAAATTTCTTAATTTCTAAAGTCTACTGTAACCAAAATATAGTAATAATATAGCAGTTGTTTATACTA----AAAAAAAAAAAAATTAGAGGATGTATATATTGG--ATATATATAGTACTTTTTGTCTC----------TCCAGCTAATGAAAGCTGGATTTTGAAAATACTTGGCAGCAACTCTTAGGTACAGGTTGGATTTACAAATATTATCATACTCTGTAATGTTAAAGTCATATTATTTTGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163466838 876 + 180432695 ACAGGGAATCTGACTTTGGAATATGTTCCTGTTGCTGTGTCAGAAAGTCACTCATGTGGTTAGTTCAAGAATGTATTGTTTTATTGGGATTTAACCTATTTCTCATTCTCTAAACCAGCAgaccccaacctttttggcaccagtaACTGGTTTCACGgaggacaatttttccatggaggAGGCGGGTGCCGCGGGGATGGTTTGAGGATGAAACttttctacctcagatcatcaggcattagttagattctca--taaggagtgcacagcctagatccctcgcatgagCAGTTTATAATGGGGttcgcactcctatgagaatctaatgcccctgctgatctgacaggaggcggatc----TCAGTAATGCTTGCTCACTGcttgccgctcacctcctgctgtgcagccggGTTCCTAACAGGCTACAGACCTCTACTAGTCCTTGACCCTGGAGGTTGGGAATCCTCCTCTAAACTAGCTCGTTGTTATGCCTGAGAGTGAGGCT------------TTGCATTTATTCCACACCTCCTGACACTTGTTTGATCATTGCGTATGTTATTAATGAATCtacttattaaattattaattataaaacatCTCTTTTTAC-TCTCCTTTGGCCTAATGATGGATTAAATCAGTACCCATGTTGGAtctaaatttcttaatttctaaagTCTACTGTAACcaaaatatagtaataatataGCAGttgtttatact-----aaaaaaaaaaaaaattgaggatgtATATATTGG--ATATATATAGTACTTTTTGTCTC----------TCCAGCTAATGAAAGCTGGATTTTGAAAATACTTGGCAGCAACTCTTAGGTACAGGTTGGATTTACAAATATTATCATACTCTGTAATGTTAAAGTCATATtattttga
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110494976 874 + 127223203 ACAGGGAGTCTGACTTTGGAATATGTTCCTGTTGCTGTGTCAGAAAGTCACTCATGTGGTTAGTTCAAGAATGTATTGTTTTATTGGAATTTAACCTATTTCTCATTCTCTAAACcagcagaccccaacctttttggcaccagtaactggtttcacggaagacaatttttccatggaggaggcgggtgttgcggggatggtttgaggatgaaacttttctacctcagatcatcaggcattagttagattctca--taaggagtgcacagcctagatccctcgcatgagcagtttataatggggttcgcactcctatgagaatctaatgcccctgctgatctgacaggaggcagatc----tcagtaatgcttgctcactgcttgccgctcacctcctgctgtgcagccgggttcctaacaggctacagacctctactagtccttgaccctggaggttggggatccTCCTCTAAACTAGCTCGTTGTTATGCCTGAGAGTGAGGCT------------TTGCATTTATTCCACACCTCCTGACACTTGTTTGATCATTGCGTATGTTATTAATGAATCTACTTATTAAATTATTAATTATAAAACATCTCTTTTTAC-TCTCCTTTGGCCTAATGATGGATTAAATCAGTACCTATGTTGGACCTAAATTTCTTAATTTCTAAAGTCTACTGTAACCAAAATATAGTAATAATATGCCA---GTTTATACT------AAAAAAAAAAAATTAGAGGATGTATATATTGGATATATATATAGTACTTTTTGTCTC----------TCCAGCTAATGAAAGCTGGATTTTGAAAATACTTGGCAGCGACTCTTAGGTACAGGTTGGGTTTACAAATATTATCATACTCTGTAATGTTAAAGTCATATTATTTTGA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23841588 879 - 128169293 ACAGGGAGTCTGATTTTGGAATATGTTCCTGTTCCTGTGTCAGAAAGTCATTCATGTGATTAGTTTAAGAATGTATTGTTTTGTTGGAATTTAACCTATTTTTCATTCTCTAAACCTgcagtccccaaccttttaggcaccaaggactggtctcatggaagacagtttttccttggagcaggagggtgctgcaaggatggtttcaggatgaaaccattccacctcagagcatcaggcattagttagattctca--taaggagcacacagcctagatccctagcgtgtgcagttcatgatggggtttgcactcc-atgggaatctaatgccgctgctgatctgacaggagacagctc--agtcagtaatgcttg-----------ccgctcatttcctgctttgcagcccagttcctaaaaggccacagacctctacaagtcctcggccctggaggtgagggaccccACTCTAAACTAGCTGTTCATTATGGCTGAGAGTGAGGCTTCAGTAATGACATTTTATTCATTCCATACCTCCTGACACCTGTTAGATTATTGCATATGTTATT----AATCTGtttattaaattattaattataaaaCATCTCTTTTTAAGTCTCCTTTGGTTTAATGATGGATCAAATCAGTACCCATATTGTATCTAAATTTCTTAATTTCTAAAGTCTACTATAACCAAAATATAGTAATAATATACCAGTTGTTTATACTAAAACAAAAAAAAAAGGATTAGAGGATGTATATATTGG--ATATGTATAGTACATTTTGTCTC----------TCCAGCTAGTGAAAGCTGGATTCTGAAAATACTTGGCAGCAACTCTTAGGTACAGGTTCGA-TTAAAAACATTTTCATACTCTGTAATGTTAAAGTGCTAATCTTTTGA
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40474311 229 + 149736546 I
e canFam3.chr16             52174079   1 -  59632846 I

a score=619696.000000
s hg38.chr7_GL383534v2_alt    114452 193 +    119183 TTTTTCCTTTTGTGTGCAAACACAGAAGTGCCATAATCAAGGAGA-TGTCGCAAAATAAAT--GGGAGTACTATAACTTAACT-T--TGAGCATGCCTTCTAGTACCTTCCTTCTACCTTTGGGCTTCTGCATTAGGCTGCTCTTGAAGTGTTTGCCGGGGCCTTCTGGCACTCTGTTGGGAGAACATGAGAAGAGCTT
s panTro4.chr7             143214219 195 + 161824586 TTTTTCCTTTTGTGTGCAAACACAGAAGTGCCATAATCAAGGAGATTGTCACAAAATAAAT--GGGAGTACTATAACTTAACTCT--TGAGCATGCCTTCTAGTACCTTCCTTGTACCTTTGGGCTTCTGCAGTAGGCTGCTCTTGAAGTGTTTGCCGGGGCCTTCTGGCACTCTGTTGGGAGAACATGAGAAGAGCTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139040292 195 + 157549271 TTTTTCCTTTTGTGTGCAAACACAGAAGTGCCATAATCAAGGAGATCGTCGCAAAATAAAC--GGGAGTACTATAACTTAACTCT--TGAGCATGCCTTCTAGTACCTTCCTTGTACCTTTGGGCTTCTGCAGTAGGCTGCTCTTGAAGTGTTTGCCGGGGCCTTCTGGCACTCTACTGGGAGAACATGAGAAGAGCTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93158346 195 + 110113093 TTTTTCCTTTTGTGTGCAAACACAGAAGTGCCGTAATCAAGGAGATTGTCGCAAAATAAAC--GGGAATACTATAACTTAACTCT--TGAGCATGCCTTCTAGTACCTTCCTTGTACCTTTGGGCTTCTGCAGTAGGCTGCTCTTGAAGTGTTTCCTGGGGCCTTCTGGCACTCTGTTGGGAGAACATGAGAAGAGCTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181051913 195 + 198365852 CTTTTCCTTTTGTGTGCAAACACAGAAGTGCCATAATCAGGGGGACTGTGGCAAAATAAAC--GGGAGTACTATAAAGTAACTCT--TGAGCATGCCTTCTAGTACCTTCCCTGTACCTTTGGGCTTCTGCAGTAGGCTGCACTTGAAGTGTTTGCCGGGTCCTTCTGACACTCTTTTGGGAGAACATGAGAAGAGCTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174799514 195 + 192294377 CTTTTCCTTTTGTGTGCAAACACAGAAGTGCCATAATCAGGGGGACTGTGGCAAAATAAAC--GGGAGTACTATAAAGTAACTCT--TGAGCATGCCTTCTAGTACCTTCCCTGTACCTTTGGGCTTCTGCAGTAGGCTGCACTTGAAGTGTTTGCCGGGTCCTTCTGACACTCTTTTGGGAGAACATGAGAAGAGCTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163467714 195 + 180432695 cttttccttttgtatGCAAACACAGAAGTGCCATAATCAGGGGGACTGTGGCAAAATAAAC--GGGAGTACTATAAAGTAACTCT--TGAGCATGCCTTCTAGTACCTTCCCTGTACCTTTGGGCTTCTGCAGTGGGCTGCACGTGAAGTGTTTGCCGGGTCCTTCTGGCACTCTTTTGGGAGAACATGAGAAgagctt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110495850 197 + 127223203 CTTTTCCTTTTGTGTGCAAACACAGAAGTGCCATAATCAGGGGGACTGTCGCAAAATAAACAGGGGAGTACTATAAAGTAACTCT--TGAGCATGCCTTCTAGTACCTTCCTTGTACCTTTGGGCTTCTGCAGTAGGCTGCACTTGAAGTGTTTGCCAGGTCCTTCTGGCACTCTTTTGGGAGAACATGAGAAGAGCTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23842467 194 - 128169293 TTTTTACTTCTGTGTGTGAACACAGAAGTGCCATAATCAGGAATATTGTTGCAAAAGAAAT--GGGAGGACTATAAATTAACTCT--TGAGCATGCCTTCTAGTACCTTCCTTGTACCTTTGGACTTCTGCAGTATGCTGCTCTTGAAGTGTTTGCCTCGT-CTTTGGGCACTCTGTTGGGAGAACATGGGAAGAGCTT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52174080 186 -  59632846 TTTAACCCTTTGTGTG-GACCACGGAAGCACCACAGTCCGGAGGGTTGCCACAAAAGAAAG--AGGATTCC---AGGTTAGCTCTCCTGTGCATGCCATCTAGGA------GTCTACCCCTGGGCTTCTGTGGCAGTCGGCCCAC-CAGCGTTTGCTTGCTCCTTCTGGTGCTGTGATGGGGGAACACATGAAGTGCAT
i canFam3.chr16            I 1 C 0
e mm10.chr6                 40474311 229 + 149736546 I

a score=957793.000000
s hg38.chr7_GL383534v2_alt    114645 241 +    119183 CTCTTCTCTTCTGGAATT--------TTCAGGAACTACTGACTATATGGTGAATGAACGTGAGTAATTCTTCTGTTTGCATTTGCCTTTCCTAAAAAA-TTAAAGCCATGTTATTCATTTGTTCTTCTTTAGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAACTACCAGTTTGGTTCTTGAAAGATGTAAGTA---GCTAATTTCCAAGTTTAAA--ATGTTATTTTTAGTAATTTGCCAA---TCTCAAA
s panTro4.chr7             143214414 241 + 161824586 CTCTTCTCTTCTGGAATT--------TACAGGAACTACTGACTATATGGTGAATGAACGTGAGTAATTCTTCTGTTTGCATTTGCCTTTCCTAAAAAA-TTAAAGCCATGTTACTCATTTGTTCTTCTTTAGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAACTACCAGTTTGGTTCTTGAAAGATGTAAGTA---GCTAATTTCCAAGTTTAAA--ATGTTATTTTTAGTAATTTGCCAA---TCTCAAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139040487 241 + 157549271 CTCTTCTCTTCTGGAATT--------TACAGGAACTACTGACTACATGGTGAATGAATGTGAGTAATTCTTCTGTTTGCATTTGCCTTTCCTAAAAAA-TTAAAGCCATGTTACTCATTTGTTCTTCTTTAGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAGCTAGCAGTTTGGTTCTTGAAAGATGTAAGTA---GCTAATTTCCAAGTTTAAA--ATGTTATTTTTAGTAATTTGCCAA---TCTCAAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93158541 234 + 110113093 CTCTTCTCTTCTGGAATT--------TACAGGAACTACTGACT--GTGGTGAATGAACGTGAGTAATTCTTCTGTTTGCATTTGCTTTTCCTAGA------AAAGCCACGTTACTCATTTCTTCTTCTTTAGGTACTTCGTCAGTTTGTAAGACATGAGTCTGAAACAACTACCAGTTTGGTTCTTGAAAGATGTAAGTA---GCTAATTTCCAAGTTTAAA--ATGTTATTTTTAGTAATTTGCCAA---TCTCAAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181052108 240 + 198365852 CTCTTCTCTTCTGGAATT--------TACAGGAATTACTGACTACATGGTGAATGAATGTGAGTAATTCTTCCG-TTGCTTTTGCCTTTCCTAAAAAA-TTAAAGCCATGTTACTCATTTGTTCTTCTTTAGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAAGTACCAGTTTGGTTCTTGAAAGATGTAAGTA---GCTAATTTCCAAGTTTAAA--ATGTTATTTTTAGTAATTTGCCAA---TCTCAAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174799709 240 + 192294377 CTCTTCTCTTCTGGAATT--------TACAGGAATTACTGACTACATGGTGAATGAATGTGAGTAATTCTTCCG-TTGCTTTTGCCTTTCCTAAAAAA-TTAAAGCCATGTTACTCATTTGTTCTTCTTTAGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAAGTACCAGTTTGGTTCTTGAAAGATGTAAGTA---GCTAATTTCCAAGTTTAAA--ATGTTATTTTTAGTAATTTGCCAA---TCTCAAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163467909 240 + 180432695 ctcttctcttctggaaTT--------TACAGGAATTACTGACTACATGGTGAATGAATGTGAGTAATTCTTCTG-TTGCTTTTGCCTTTCCTAAAAAA-TTAAAGCCACGTTACTCATTTGTTCTTCTTTAGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAACTACCAGTTTGGTTCTTGAAAGATGTAAGTA---GCTAATTTCcaagtttaaa--atgttatttttagtaatttgcCAA---TCTCAAA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110496047 240 + 127223203 CTCTTCTCTTCTGGAATT--------TACAGGAATTACTGACTACATGGTGAATGAATGTGAGTAATTCTTCCGTTTGCTTTTGCGTTTCCT-AAAAA-TTAAAGCCATGTTACTCATTTGTTCTTCTTTAGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAACTACCAGTTTGGTTCTTGAAAGATGTAAGTA---GCTAATTCCCAAGTTTAAA--ATGTTATTTTTAGTAATTTGCCAA---TCTCAAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23842661 241 - 128169293 CTCATCTCTTCTGGAATT--------TATAGGAACTACTGACTAAATGGTGAATGAATGTGAGTAATTCTTCTGTTGGCATTTGCCTTAACTAAAATA-TTAAAGCCGTGCTATTCATTTGTTCTTCTTTAGGTACTTCATCAGTTTGTAAGACATGCATCCGAAACAGCTGCCAGTTTGGTTCTTGAAAGATGTGAGTA---GCTAATTTCCAAGTTTAAA--ATGTTGTTTTTAGCAATTTGCTGA---TCTCAGT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40474540 244 + 149736546 CTGTCCTTTTCTGGAACT--------TGTAGGAACTGTTGATTAAATGGTGAATAAATATGAGTAGGTCTTCTATTGGCATTTCTCTTTTCTAAAAAGTTTAAAACCATATTACGTGTTTGTTCTCCTTTAGGTATTTCGTCAGTTTGTAAGACATGAGTCTGAAGTAGCCAGCAGTTTGGTTCTTGAACGATGTAAGTA----CCAGAGTCTGAGTTTACA--ATGTTATTTACAGTGCTTTGCTAATACTCTCAAA
i mm10.chr6                I 229 I 784
s canFam3.chr16             52174266 246 -  59632846 CGCTTGTCTTCTGGGCATATGTGTGCTGTAGGAGCCGCTGACCCCATGGTGACTGAGTGTGAGCAGGTTTTCTGTTTGCGTTTCCCTTTCCTCCAAA--TTAAAGTCATTCTACTTGTTTGTTCCACTTTAGGTATTTCATCAGTTTGTGAGACGCGAGTCTGAAATAGCCAGCAGCTTGGTTCTTGAAAGATGTAAGTAATAGCTAATTTCCAAGTTCAAAGTATGTTGTTTATGGCAATGTGCAAA----------
i canFam3.chr16            C 0 C 0

a score=218199.000000
s hg38.chr7_GL383534v2_alt    114886 74 +    119183 TGTGTTGTAGAAGAGGTATGCT-----GCT-TGGGTTAACCATGTTG-CCATTGTGCTTTTAGCTCATGTTTGCTCTTCAG
s panTro4.chr7             143214655 74 + 161824586 TGTGTTGTAGAAGAGGTATGCT-----GCT-TGGGTTAACCATGTTG-CCATTGTGCTTTTAGCTCATGTTTGCTCTTCAC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139040728 74 + 157549271 TGTGTTATAGAAGAGGTATGCT-----GCT-TGGGTTAACCATGCTT-TCATTGTGCTTTTAGCTCATGTTTGCTCTTCAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93158775 74 + 110113093 TGTGTTGTAGAAGAGGTATGCT-----GCT-TGGGTTAGCCATGTTG-TCATTGTGGTTTTAGCTCATGTTTGCTCTTCAG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181052348 74 + 198365852 TGTGCTGTAGAAGAGGTATGCT-----GGT-TGGGTTTACCATGTTA-TCATTGTGCTTTTAGTTTATGTTTGCTCTTCAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174799949 74 + 192294377 TGTGCTGTAGAAGAGGTATGCT-----GGT-TGGGTTTACCATGTTA-TCATTGTGCTTTTAGTTTATGTTTGCTCTTCAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163468149 74 + 180432695 TGTGCTGTAGAAGAGGTATGCT-----GGT-TGGGTTTACCATGTTA-TCATTGTGCTTTTAGTTTATGTTTGCTCTTCAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110496287 74 + 127223203 TGTGCCGTAGAAGAGGTATGCT-----GGT-TGGGTTAACCATGTTG-TCATTGTGCTTTTAGTTTATGTTTGCTCTTCAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23842902 72 - 128169293 TGTGCTGTAGAAGAGGTATGCT-----GGTCTGGTTTAACCATGTT----ATTGTGCTTTTAGCTCACATTTGCTCTTCAG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52174512 78 -  59632846 --TATTGTAGACGAGGTGCACTAACTAGTT-AGGGTGTAATCTGCTGATCCCCAGGCTCTTGGCTCCTGTTTGCCTCTCCC
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40474784 784 + 149736546 I

a score=302711.000000
s hg38.chr7_GL383534v2_alt    114960 103 +    119183 ATCTTAGCCTTGACACATCAGGCTGTGGAGACATAGTATAAACTGAGCCCCTGTTCTCCTTATCAGCCAGTTACTACTCATTCTTGTCAACACTGTCCTGCAT
s panTro4.chr7             143214729 103 + 161824586 ATCTTAGCCTTCACCCATCAGGCTGTGGAGACATAGTATAAACTGAGCCCCTATTCTCCTTATCAGCCAGTTACTACTCATTCTTGTCAACACTGTCCTGCAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139040802 103 + 157549271 ATCTTAGCCTTGACCCATCAGGCTGTGGAGACATAGTATAAACTGAGCCCCTAGTCTCCTTATCAGCCAGTTACTACTCATTCTCGTCAACACTGTCCTGCAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93158849 103 + 110113093 ATCTTAGCCTTGACCCATCAGGCTGTGGAGACATAGTATAAACTGAGCCCCTATTCTCCTTATCAGCCAGTTACTACTCATTCTCATCAACACTGTTCTGCAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181052422 103 + 198365852 ATCTTAGCCTTGACCCATCAGGCTGTGGAGACATAGTATAAACTGAGCCCCTATTCTCCTTATCAGCCAGTTACTACTCATTCTCGTCGACCCTGTCCTGCAT
i rheMac3.chr3             C 0 I 312
s macFas5.chr3             174800023 103 + 192294377 ATCTTAGCCTTGACCCATCAGGCTGTGGAGACATAGTATAAACTGAGCCCCTATTCTCCTTATCAGCCAGTTACTACTCATTCTCGTCGACCCTGTCCTGCAT
i macFas5.chr3             C 0 I 314
s papAnu2.chr3             163468223  93 + 180432695 ATCTTAGCCTTGACCCATCAGGCTGAGGAG----------AACTGAGCCCCTATTCTCCTTATCAGCCAGTTACTACTCATTCTCGTCGACCCTGTCTTGCAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110496361 103 + 127223203 ATCTTAGCCTTGACCCATCAGGCTGTGGAGATATAGTATAAACTGAGCCCCTATTCTCCTTATCAGCCAGTTACTACTCATTCTCGTCAACTCTTTCCTGCAT
i chlSab2.chr21            C 0 I 307
s calJac3.chr8              23842974 103 - 128169293 ATCTTGGTTGTGACCCATCAGGCTGTGGACACATAGTATAAACTGAGCCCCTATTCTTCTTATCAGCCAGTGACTACTCATTCTCATCATCACTGTCCTGCAT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40475568  83 + 149736546 ATTTTACCCTGCACC--TCTAGCTGTGAAAACTTAGTGTAAATAGAGCTTATAGTGT-----------GGATATCACCCCCTCCTGCC-CCACTGTC------
i mm10.chr6                I 784 C 0
s canFam3.chr16             52174590  37 -  59632846 CTCTTGGCCTTGCCCCATTGGGCTGCAGGGGCCTCGT------------------------------------------------------------------
i canFam3.chr16            C 0 C 0

a score=14056.000000
s hg38.chr7_GL383534v2_alt    115063 4 +    119183 AAGA
s panTro4.chr7             143214832 4 + 161824586 AAGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139040905 4 + 157549271 AAGA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93158952 4 + 110113093 AAGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181052837 4 + 198365852 aaga
i rheMac3.chr3             I 312 C 0
s macFas5.chr3             174800440 4 + 192294377 aaga
i macFas5.chr3             I 314 C 0
s papAnu2.chr3             163468316 4 + 180432695 CAga
i papAnu2.chr3             C 0 I 306
s chlSab2.chr21            110496771 4 + 127223203 aaga
i chlSab2.chr21            I 307 C 0
s calJac3.chr8              23843077 4 - 128169293 AAGA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52174627 3 -  59632846 -AGA
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40475651 0 + 149736546 C

a score=1239222.000000
s hg38.chr7_GL383534v2_alt    115067 379 +    119183 ATTTCCTTGAGTCATATTTGGTTATCTGAGTCTTCCCGGGTTATGTTGTATTAGGCTGAGATTGTAAAAGAT-------ATTGTTTCTTCACAGAAATAT---TCCCT-------TGTGTTTATAAAGATTTTC--AGATCTCAGATTTGTTCTTTTAGCTCCACAGTCAGTT---AAAAAAGATATCTTA-------AAGAATTTAAGATCTAGAGCTTACAGTTTGTTTTGTGGGGCTGCTTTCTCTATGAC-TA------------------------------TTTTCTTCTTTCTTGCCAACTCTC---TTCTCTCGCAACCTCTCCTTATTCATTCCTTAACTTATTTTCTGATCTTCCAGAACTTGGGTTTTACTTAATGCAGAGATTGAAGTTGAAGTCATATTTATAGCATTT---CTT---CTGGACATT--TCTCTCAG
s panTro4.chr7             143214836 382 + 161824586 ATTTCCTTGAGTCATATTTGGTTATCTGAGTCTTCCCGGGTTATGTTGTATTAGGCTGAGATTGTAAAAGAT-------ATTGTTTCTTCACAGAAATAT---TCCCT-------TGTGTTTATAAAGATTTTC--AGATCTCAGATTTGTTCTTTTAGCTCCACAGTCAGTT---AAAAAAGATATCTTAAAG----AAGAATTTAAGATCTAGAGCTTACAGTTTGTTTTGTGGGGCTGCTTTCTCTATGAC-TA------------------------------TTTTCTTCTTTCTTGCCAACTCTC---TTCTCTCGCAACCTCTCCTTATTCATTCCTTAACTTATTTTCTGATCTTCCAGAACTTGGGTTTTACTTAATACAGAGATTGAAGTTGAAGTCATATTTACAGCATTT---CTT---CTGGACATT--TCTCTCAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139040909 384 + 157549271 ATTTCCTTGAGTCATATTTGGTTATCTGAGTCTTCCCAGGTTCTGTTGTATTAAGCTGAGATTGTAAAAGAT-------ATTGTTTCTTCACGGAAATAT---TCCTT-------TGTGTTTATAAAGATTTTC--AGATCTCAGATTTGTTCTTTTAGCTCCACAGTCAGTT---AAAAAAGATACCTTAAAG----AAGAATTTAAGATCTAGAGCTTACAGTTTGTTGTGTGGGGCTGCTTTCTTTATGAC-TA------------------------------TTTTCTTCTTTCTTGCCAACTCTC-TTTTCTCTCACAACCTCTCCTTATTCATTCCTTAACTTATTTTCTGATCTTCCAGAACTTGGGTTTTACTTAATACAGAGATTGAAGTTGAAGTCATATTTATAGCATTT---CTT---CTGGACATT--TCTCTCAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93158956 371 + 110113093 ATTTCCTTGAGTCATATTTAGTTATCTGAGTCTTCCCAGGTTATGTTGTATTAGGCTGAGATTGTAAAAGAT-------ACTGTTTCTTCACAGAAATAT---TCCCT-------TGTGTTTATAAAGATTTTC--AGATCTCAGATTTGTTCTTTTAGCTCCACAGTCAGTT---AAAAAAGATATCTTAATG----AAGAATTTAAGATCTAGGGCTTACAGTTTGTTTTGTGGGGCTGCTTTCTATATGAC-TA------------------------------TTTTCTTCTTTCTTGCCAACTCTC-TTTTCTCTCGCAACCTCTCCTTATTCATTCCTTAACTTATTTTCTGATCTTCCAGAACTTGGGTTTTACTTAATAC---------------AGTCATATTTATAGCATTT---CTT---CTGGGTGTGGATTTCTCAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181052841 404 + 198365852 aCTTCCTTGAGTCATATTTGGTTATCTGAGTCTTCCCAGATTA-----TATTAGGCTGATATTATAAAAGAT-------ACTGTTTCTTCACAGAAATAT---TCCCT-------TGTATTTATAAAGATTTTC--AGATCTCAGATTTGTTCTTTTAGCTCCACAGTCAGTT---AAAAAAGATATCTTAAAG----AAGAATTTAAGATCTAGAGCTTACAGTTTGTTTCGTATGGCTGCTTTTTCTATGAG-TATTTTCTTCTTTCTTGACAACACTCTTTGCTTTTTCTTCTTTCTTGACAACACTC-TTTGCTCTCGCAACCTCTTCTTATTCATTC-----CTTATTTTCTGATCTTCCAGAACTTGGGTTTTACTTAATACAGAGATTGAAGTTGCAGTGGTATTTATAGCATTT---CTT---CTGGACATT--TCTCTCAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174800444 379 + 192294377 aCTTCCTTGAGTCATATTTGGTTATCTGAGTCTTCCCAGATTA-----TATTAGGCTGATATTATAAAAGAT-------ACTGTTTCTTCACAGAAATAT---TCCCT-------TGTATTTATAAAGATTTTC--AGATCTCAGATTTGTTCTTTTAGCTCCACAGTCAGTT---AAAAAAGATATCTTAAAG----AAGAATTTAAGATCTAGAGCTTACAGTTTGTTTCGTATGGCTGCTTTCTCTATGAG-TA------------------------------TTTTCTTCTTTCTTGACAACACTC-TTTGCTCTCGCAACCTCTTCTTATTCATTCCTTAACTTATTTTCTGATCTTCTAGAACTTGGGTTTTACTTAATACAGAGATTGAAGTTGCAGTGGTATTTATAGCATTT---CTT---CTGGACATT--TCTCTCAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163468626 409 + 180432695 atttccttgaGTCATATTTGGTTATCTGAGTCTTCCCAGATTA-----TATGAGGCTGAGATTATAAAAGAT-------Actgtttcttcacagaaatat---tcCCT-------TGTATTTATAAAGATTTTC--AGATctcagatttgttcttttagctCCACAGTCAGTT---AAAAAAGATATCTTAAAG----AAGAATTTAAGATCTAGAGCTTACAGTTTGTTTCGTGGGGCTGctttctctatgag-tgttttcttctttcttgacaacactctttgctttttcttcttttttgacaacactc-tttgctctcGCAACCTCTTCTTATTCATTCCTTAACTTATTTTCTGCTCTTCCAGAACTTGGGTTTTACTTAATACAGAGATTGAAGTTGCAGTGATATTTATAGCATTT---CTT---CTGGACATT--TCTTTCAA
i papAnu2.chr3             I 306 C 0
s chlSab2.chr21            110496775 379 + 127223203 aTTTCTTTGAGTCATATTTGGTTATCTGAGTCTTCCCAGATTA-----TATTAGGCTGAGATTATAAAAGAT-------ATTGTTTCTTCACAGAAATAT---TCCCT-------TGTATTTATAAAGATTTTC--AGATCTCAGATTTGTTCTTTTAGCTCCACAGTCAGTT---AAAAAAGATATCTTAAAA----AAGAATTTAAGATCTAGAGCTTACAGTTTGTTTCGTGGGGCTGCTTTCTCTATGAC-TA------------------------------TTTTCTTCTTTCTTGACAACACTC-TTTGCTCTCGCAACCTCTCCTTATTCATTCCTTAACTTATTTTCTGATCTTCCAGAGCTTGGGTTTTACTTAATACAGAGATTGAAGTTGCAGTGATATTTATAACATTT---CTT---CTGGACATT--TCTCTCAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23843081 377 - 128169293 ATTTCC-TGAGTCACACTTGGTTATCTGAGTCTTCCCAGGTTATGTTATTGCAGGCTGAGATTGTAAAAGAT-------ACTGTGTCTTCACATAAATAT---TCCCT-------TGTACTTACAAATATTTTC--AGATCTCAGATTTGTTCTTTTCGTTCCACAGTCAGCT---AAAAAAGATATCTTAAAA----AAGAATTTAAAATATAGAGCTTACAGTTTGTTTTGTGGGGCTGCTTTCTCTATGACTTA------------------------------TTTTCTTCTTTCTTGCCAACGCTT---TTCTCTTGCAGCCTTTCCGTATTCATTC-----CTTATTTTCTGATCTTCTAGAACTTGAGTTTTACTTAATACAGAGATTGAAGTTGAAGTAATATTTATAGTATTT---CTT---CTGGACATT--TCTTTCAA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40475651 284 + 149736546 -------TGA----------------TGAGTTCTTCAAGAGTG-----TGTTATACAGGGTTCAAAGAAGA----------------CTCACAGAAATAC---TTCTT-------TTTG-TAATAGAGATTTTCTTAAACCTAAGATTTGCTTTTTTAGCTC--------------------------------------------AAGATAAAGAGCATAAAGTTTGTTCTGTGGGGCTGCTTTC---------TG------------------------------CTTTCTGCTTTCTTA-----TCCT-TTCTCCCCTACAGACTTTTCCT--------------TTATTTGTTGATCTT---GAGCTTGAGTTTTTCATAATGCAGAGATTACTGCTGAAGCAGTATTTGCAGTTGTT---CATTCCCTGGACATG--TCTGTCAG
i mm10.chr6                C 0 C 0
s canFam3.chr16             52174630 406 -  59632846 ATTTCCTTGAGTCCTGTTTGGTGACCTCAGTCTCCCAGGGTCATGTGCTGTTTGCCTGAGGGAGTGGAAGTTTGTGCAAGCTATTCTTTCACAGAAATATATATACTTAGATATATTTATGTATAAAGATTTTC--AGAGCTCAGATTTGTTCTTTTAACCATATAGTTTTTTTCAAAAAAAGATAGTCTAAGATTTTAAGA---TAAAATAAAGAGCATAATGTGTGTTTTGTGAGA-TACTTTCTCTAAGAA-TA------------------------------TTTTCTCTCTTCTCGACAGCTCTTCTTTCCCCTCCCAACCTCTTGTTATTCACCCC--AAGTTACAC-CCGATCTTCTAGAACGTGGGTTTTGCTTAATGCTGAGATTGGAGTTAAAGTACTATTTGTAGCTGTTCCCCTT---CTGGACCTTT-TCTCTGAA
i canFam3.chr16            C 0 C 0

a score=10699.000000
s hg38.chr7_GL383534v2_alt    115446 4 +    119183 TCTT
s panTro4.chr7             143215218 4 + 161824586 TCTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139041293 4 + 157549271 TCTT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93159327 4 + 110113093 TCTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181053245 4 + 198365852 TCTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174800823 4 + 192294377 TCTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163469035 4 + 180432695 TGTT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110497154 4 + 127223203 TCTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23843458 4 - 128169293 TCAT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40475935 4 + 149736546 TTTC
i mm10.chr6                C 0 C 0
e canFam3.chr16             52175036 0 -  59632846 C

a score=2552.000000
s hg38.chr7_GL383534v2_alt    115450 1 +    119183 G
s panTro4.chr7             143215222 1 + 161824586 G
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139041297 1 + 157549271 G
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93159331 1 + 110113093 G
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181053249 1 + 198365852 G
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174800827 1 + 192294377 G
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163469039 1 + 180432695 G
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110497158 1 + 127223203 G
i chlSab2.chr21            C 0 C 0
s mm10.chr6                 40475939 1 + 149736546 A
i mm10.chr6                C 0 C 0
e canFam3.chr16             52175036 0 -  59632846 C
e calJac3.chr8              23843462 0 - 128169293 C

a score=7772.000000
s hg38.chr7_GL383534v2_alt    115451 16 +    119183 AGTGTGGAtttc----------tttt
s panTro4.chr7             143215223 16 + 161824586 GGTGTGGAtttc----------tttt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139041298 26 + 157549271 GGTGTGGAtttctttttttttttttt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93159332 15 + 110113093 GGTGTGGAtttc-----------ttt
i nomLeu3.chr13            C 0 C 0
s mm10.chr6                 40475940 16 + 149736546 GGTGTGGGTTTA----------TCCT
i mm10.chr6                C 0 I 42
e canFam3.chr16             52175036  0 -  59632846 C
e calJac3.chr8              23843462  0 - 128169293 C
e chlSab2.chr21            110497159  0 + 127223203 C
e papAnu2.chr3             163469040  0 + 180432695 C
e macFas5.chr3             174800828  0 + 192294377 C
e rheMac3.chr3             181053250  0 + 198365852 C

a score=146643.000000
s hg38.chr7_GL383534v2_alt    115467 285 +    119183 tttttgagactgagtcttgctctgtcgcccaggctggagtgcagtggcgcggtctccgctcactgcaaactctgcctcccgggttcatgccattctcctgcctcagccttccaagtagctgggactacaggcgcccgccaccacgcccagctaattttttgtattttagtagagatggggtttcaccgtgttagccagcatggtctctctctcctgaccttgtgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcc
s panTro4.chr7             143215239 285 + 161824586 tttttgagactgagtcttgctctgtcgcccaggctggagtgcagtggcgcagtctccgctcactgcaaactccgcctcccgggttcatgccattctcctgcctcagccttccaagtagctgggactacaggcgcctgccaccatgcccagctaattttttgtattttagtagagatggggtttcaccgtgttagccaggatggtctctctttcctgacctcgtgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcc
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139041324 285 + 157549271 tttttgagacagagtctcgctctgtggcccaggctggagtgcagtggcatggtctccgctcactgcaagctccgcctcctgggttcacgccattctcctgcctcagcctgccaagtagctgggactataggcgcctgccaccacgcccagctaattttttgtattttagtagagacggggtttcaccgtgttagccaggatggtcttgatctcctgacctcatgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcctggcc
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93159347 285 + 110113093 tttttgagacagagtctcactctgtcgcctatgctggagtgcagtggcgcggtttctgctcactgcaaactccgcctcccgggttcacaccattctcctgcctcagcctcccaagtagctgggactacaggcacccgccaccatgcccagctagttttttgtattttagtagagacagggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccgcccgcctcggcctcccaaagtgctgggattacaggcacgagccaccgcgcccggcc
i nomLeu3.chr13            C 0 C 0
e mm10.chr6                 40475956  42 + 149736546 I
e canFam3.chr16             52175036   0 -  59632846 C
e calJac3.chr8              23843462   0 - 128169293 C
e chlSab2.chr21            110497159   0 + 127223203 C
e papAnu2.chr3             163469040   0 + 180432695 C
e macFas5.chr3             174800828   0 + 192294377 C
e rheMac3.chr3             181053250   0 + 198365852 C

a score=910.000000
s hg38.chr7_GL383534v2_alt    115752 1 +    119183 A
s panTro4.chr7             143215524 1 + 161824586 A
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139041609 1 + 157549271 A
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93159632 1 + 110113093 A
i nomLeu3.chr13            C 0 C 0
s calJac3.chr8              23843462 1 - 128169293 A
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40475956 42 + 149736546 I
e canFam3.chr16             52175036 0 -  59632846 C
e chlSab2.chr21            110497159 0 + 127223203 C
e papAnu2.chr3             163469040 0 + 180432695 C
e macFas5.chr3             174800828 0 + 192294377 C
e rheMac3.chr3             181053250 0 + 198365852 C

a score=243075.000000
s hg38.chr7_GL383534v2_alt    115753 84 +    119183 GGTGTGGATTTCTTTAATGGTCAGCTTAGAggctgctat-aaaaaaataccatagaccaggtggcttcaccaacagcatttattt
s panTro4.chr7             143215525 84 + 161824586 GGTGTGGATTTCTTTAATGGTCAGCTTAGAggctgctat-aaaaaaataccatagaccaggtggcttcaccaacagcatttattt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139041610 84 + 157549271 GGTGTGGATTTCTTTAATGGTCAGCTTAGAggctgttat-aaaaaattaccatagaccaggtggcttcaccaacagcatttattt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93159633 80 + 110113093 GGTGTGGATTTCTTTAATGGTCAGCTTAGAggctgctat-aaaaaaataccatagacccggtggcttcaccaacagc----attt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181053250 81 + 198365852 GGTGTGGATTTCTTTAGTGGTCAGCTTAGAggctgctat-aaaaaaataccatagaccgggtggcttcaccaaca---tttattt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174800828 81 + 192294377 GGTGTGGATTTCTTTAGTGGTCAGCTTAGAggctgctat-aaaaaaataccatagaccgggtggcttcaccaaca---tttattt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163469040 82 + 180432695 GGTGTGGATTTCTTTAGTGGTCAGCTTAgaggctgctataaaaaaaataccatagaccGGGTGGCTtcaccaaca---tttattt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110497159 81 + 127223203 GGTGTGGATTTCTTTAATGGTCAGCTTAGAggctgctat-aaaaaaataccatagaccgggtggcttcaccaaca---tttattt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23843463 84 - 128169293 GGTGTGGATTTCTTTAATGGTCAGCTTATAggctgctat-aaggcaataccatagaccaggtggcttaaccaacagcatttattt
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40475956 42 + 149736546 I
e canFam3.chr16             52175036  0 -  59632846 C

a score=916862.000000
s hg38.chr7_GL383534v2_alt    115837 294 +    119183 ctcacagttctagaggctaaaaatccaagattcgtgtgccagtatgattgagctcttggcgagggctgtcttcctggcttgcagatggttgccttctca-ccgtgtcttcatatggtagagacagaaagttctgaactc--------ttcctgttcctatagggac------------------acctcaccctcatgacgtcatctaagcctaattaccttttaagga-tcccacttccaaataccattacattgagggttagagcttcaacatacaaattttgggggaaggggcacaactattcag--------tctatag-----------caG--GT----TG
s panTro4.chr7             143215609 294 + 161824586 ctcacagttctggaggctaaaaatccaagattcgtgtgccagtatgattgagctcttggcgagggctgtcttcctggcttgcagatggttgccttctca-ccgtgtcttcacatggtagagacagaaagttctgaactc--------ttcctgttcctatagggac------------------acctcaccctcatgacgtcatctaagcctaattaccttttaagga-tcccacttccaaataccattacattgagggttagagcttcaacatacaaattttgggggaaggggcacaaatattcag--------tctatag-----------caG--GT----TG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139041694 298 + 157549271 ctcacagttctggaggctaaaaatccaagattcatgtgccagtatgattgagctcttggtgagggctgtcttcctggcttgcagatggttgccttctca-ctgtgccttcacatggtagagacagaaagttctgaactc--------ttcctattcctatagggac------------------acctcaccctcatgacatcatctgagcctaattaccttttaagga-ccccacttccaaataccattacattgagggttagagcttcaacatacaaattttgggggaaggggcacaaatactcag--------tctgtag-----------caG--GTTGTCTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93159713 298 + 110113093 ctcacagttctggaggctaaaaatccaagattcgtgtgccagtatgattgagctcttggtgagggctgtcttcctggcttgcaggtggttgccttctca-ccgtgtcttcacatggtagagacagaaagttctgaactc--------ttcctattcctatagagac------------------acgtcaccctcatgacgtcatctaagcctaattaccttttaagga-ccccacttccaaataccattacattgagggttagagcttcaacatacaaattttgggggaaggggcacaaatattcag--------tctatag-----------caG--GTTATCTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181053331 291 + 198365852 ctcacagttctggaggctaaaaatccaggattcgtgtgccagtatgattgagctcttggtgagggctgtcttcctggcttgcagatggttgccttctca-ctgtgtcttcacatggtggagacagaaagttctgaactc--------------ttcctataggggc------------------acttcaccctcatgacgtcatctaagcctaattaccttttaaggatccccacctccaaataccattacattgaggg-tagagcttcaacatacaaattt-gggggaaggggcacaaatattcag--------tctatag-----------caG--GTTCTGTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174800909 292 + 192294377 ctcacagttctggaggctaaaaatccaggattcgtgtgccagtatgattgagctcttggtgagggctgtcttcctggcttgcagatggttgccttctca-ccgtgtcttcacatggtggagacagaaagttctgaactc--------------ttcctataggggc------------------acttcaccctcatgacgtcatctaagcctaattaccttttaaggatccccacctccaaataccattacattgagggttagagcttcaacatacaaattt-gggggaaggggcacaaatattcag--------tctatag-----------caG--GTTCTGTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163469122 292 + 180432695 ctcacagttctggaggctaaaaatCCAGGATTCGTGTGCCAGTATGATTGAGCTCTTGGTGAGGgctgtcttcctggcttgcagatggttgCCTTCTCA-ccgtgtcttcacatggtggagacAGAAAGTTCTGAACTC--------------TTCCTATAGGGGC------------------ACTTCACCCTCATGACGTCATCTAAGCCTAATTACCTTTTAAGGatccccacctccaaataccattacattgagggttagagcttcaacatacaaattt-gggggaaggggcacaaatattcag--------tctataG-----------CAG--GTTCTGTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110497240 293 + 127223203 ctcacagttctggaggctaaaaatccaggattcgtgtgccagtatgattgagctcttggtgagggctgtcttcctggcttgcagatggttgccttctca-ccgtgtcttcacatggtggagacagaaagttctgaactc--------------ttcctataggggc------------------acctcaccctcatgacgtcatctaagcctaattaccttttaaggacccccacctccaaataccattacattgagggttagagcttcaacatacaaatttggggggaaggggcacaaatattcag--------tctatag-----------caG--GTTCTGTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23843547 295 - 128169293 ctctcagttctggaggctgaaagtccaagattagtgtaccagtatgactg-gccct--gtgagggtcctcttccttgcttgcagatggtcggcttctta-ctgtgttttcacatggtaaagacagaaagttctgaactc--------ttcctttttctataaggac------------------accttaccatcatgatgtcatctaagcctaattaccttttaaggg-ctccacctccaagtaccatcaccttgagggttagggcttcaacatacaaatattgggggaaggagcacaaatatttag--------tctatag-----------caG--GTTCTCTG
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40475998 339 + 149736546 ctcacatctctg--gtcttgaaggctaagaccagtgtgtcagcatggctgggttacctgtcaggcacaacttacaggtttgcagagaattgccctgtcagttctgtctttggatggcagtagtggggtagttgggactctgatcttttttctttccttataaggacactaattccctcacggagacttcaccttcataacctcatctaaacctaatttcccacacagag--atcacctccagatactgtcacactggaagttaaagtgcagagaatcaagctttcag----gatgcataaacatagagcacatggcTCTATAGAACATAGTCATCAGCTGTTCTCAG
i mm10.chr6                I 42 C 0
e canFam3.chr16             52175036   0 -  59632846 C

a score=2155389.000000
s hg38.chr7_GL383534v2_alt    116131 527 +    119183 TCTCATTTGGTCTTGATGTTGTGTTTCAGCCCTGAATCGTGTGCACTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGATAGTGAAGTTTACCAACTGGGTGAGTACAAAAGACTGGGGTTTTAATTTTATCAGCAATAAATAGATATTATTTATTGCCAGTTATCTAATTTAGAGATAAACCACTTTAAACAAGATCTGTCT---TTCATTCTGTT-TGTTCTCT------------------TAGAAATCGTGACATTGGTTTTCCTGGGCATGTTGTCTGTTGGCATTTGT--------------------AACCAATTTCCTAT-TTTTATGATTTAGGTGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTCCGGCCAGGCCTCAGAGACGTGGCATATCAATATGTGAAAAAGGGGTAAGTTGAAGAGGGAAGGATCTTATGAATTGAATGATTTAAAGAACCGATAAGAAGTGTTCTCATGGC
s panTro4.chr7             143215903 527 + 161824586 TCTCATTTGGTCTTGATATTGTGTTTCAGCCCTGAATCGTGTGCACTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGACAGTGAAGTTTACCAACTGGGTGAGTACAAAAGACTGGGGTTTTAATTTTATCAGCAATAAATAGATATTATTTATTGCCAGTTATCTAATTTAGAGATAAACCACTTTAAACAAGATCTGTCT---TTCATTCTGTT-TGTTCTCT------------------TAGAAATCGTGACATTGGTTTTCCTGGGCATGTTGTCTGTTGGCATTTGT--------------------AACCAATTTCCTAT-TTTTATGATTTAGGTGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTCCGGCCAGGCCTCAGAGACGTGGCATATCAATATGTGAAAAAGGGGTAAGTTGAAGAGGGAAGGATCTTATGGATTGAATGATTTAAAGAACCGATAAGAAGTGTTCTCATGGC
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139041992 527 + 157549271 TCTCATTTGGTCTTGATGTTGTGTTTCAGCCCTGAATCGTGTGCATTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCCCTAGCAACTAACGAGATGTGGCGATCAGGGGACAGTGAAGTTTACCAATTGGGTGAGTAGAAAAGACTGGGGTTTTAATTTTATCAGCAATAAATAGATACTATTTATTGCCAGTTATCTAATTTAGAGATAAACCACTTTAAACAAGATCTGTCA---TTCATTCTGTT-TGGTCTGT------------------TAGAAATTGTGACATTGGTTTTCCTGGGCATGTTGTCTGTTGGCATTTAT--------------------AACCAGTTTCCTAT-TTTTATGATTTAGGTGATATCAGTCAAAAGACAACATGGCACAGAATATCAGTATTCCGGCCAGGCCTCAGAGACGTGGCATATCAGTATGTGAAAAAGGGGTAAGTTGAAGAAGGAAGGATCTTATGGATTGAATGGTTTAAAGAACTGATAAGAAGTGTTCTCATGGC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93160011 523 + 110113093 TCTCATTTGGTCTTGATGTTGCATTTCAGCCTTGAATCGTGTGCAGTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGACAGTGAAGTTTACCAATTGGGTGAGTAGAAAATACTGGGG-TTTAATTTTATCAGCAATAAATAAATATTATTTATTGCCAGTTATCTGATTTAGAGATAAACCACTTTAAACAAGATCTGTCT---TTCATTCTGTT-TGTTCTCT------------------TAGAAATTGTGACATTGGTTTTCCTGGGCATGTTGTCTGTTGGCATTTGT--------------------AACCAATTTCCTAT-TTTTATTATTTAGGTGATATCAGTCAAAAGACAACATGGCACAGAATATCAGTATTCCGGCCAGGCCTCAGAGACGTGGCATATCAGTATGTGAAAAAGGGGTAAGTTGAA---GGAAGGATCTTATGGATTGAATGGTTTAAAGAACTGATAAGAAGTGTTCTCATGGC
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181053622 518 + 198365852 TCTCATTTGGTCTTGGTGTTGTGTTTCAGCCCTGAATCGTGTGCAGTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGACAGTGAAGTTTACCAAATGGGTGAGTAGAAAAGATGGGGG-TTTAATGTTATCAGCAATAAATAGATACCATTTACTGCCAGTTGTCTAATTTAGAGATAAGCCACTTTAAACAAGA----TCT-------TTCTGTT-TGTTCTCT------------------TAGCAATTGTGACGTTGGTTTTCCTGGGCATGTTGTCCGTTGGCATTTGT--------------------AACCAGTTTCCTAT-TCTTGTGATTTAGGTGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTTCGGCCAGGCCTCAGAGACGTGGCATATCAGTATGTGAAAAAGGGGTAAGTTGAAGAAGGAAGGATCTTATGGATTGAATGGTTTAAAGAACTGGTAAGAAGTGTTCTCATGGC
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174801201 522 + 192294377 TCTCATTTGGTCTTGGTGTTGTGTTTCAGCCCTGAATCGTGTGCAGTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGACAGTGAAGTTTACCAAATGGGTGAGTAGAAAAGATGGGGG-TTTAATTTTATCAGCAATAAATAGATACTATTTACTGCCAGTTGTCTAATTTAGAGATAAGCCACTTTAAACAAGATCTGTCT-------TTCTGTT-TGTTCTCT------------------TAGCAATTGTGACGTTGGTTTTCCTGGGCATGTTGTCCGTTGGCATTTGT--------------------AACCAGTTTCCTAT-TCTTGTGATTTAGGTGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTTCGGCCAGGCCTCAGAGACGTGGCATATCAGTATGTGAAAAAGGGGTAAGTTGAAGAAGGAAGGATCTTATGGATTGAATGGTTTAAAGAACTGATAAGAAGTGTTCTCATGGC
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163469414 522 + 180432695 TCTCATTTGGTCTTGGTGTTGTGTTTCAGCCCTGAATCGTGTGCAGTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGACAGTGAAGTTTACCAAATGGGTGAGTAGAAAAGATGGGGG-TTTAATTTTATCAGCAATAAATAGATACTATTTACTGCCAGTTGTCTAATTTAGAGATAAGCCACTTTAAACAAGATCTGTCT-------TTCTGTT-TGTTCTCT------------------TAGCAATTGTGACGTTGGTTTTCCTGGGCATGTTGTCCGTTGGCATTTGT--------------------AACCAGTTTCCTAT-TCTTGTGATTTAGGTGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTTCGGCCAGGCCTCAGAGACGTGGCATATCAGTATGTGAAAAAGGGGTAAGTTGAAGAAGGAAGGATCTTATGGATTGAATGGTTTAAAGAACTGATAAGAAGTGTTCGCATGGC
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110497533 522 + 127223203 TCTCATTTGGTCTTGGTGTTGTGTTTCAGCCCTGAATCGTGTGCATTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGACAGTGAAGTTTACCAAATGGGTGAGTAGAAAAGATGGGGG-TTTAATTTTATCAGCAATAAATAGATACTATTTATTGCCAGTTGTCTAATTTAGAGATAAGCCACTTTAAACAAGATCTGTCT-------TTCTGTT-TGTTCTCT------------------TAGAAATTGTGACATTGGTTTTCCTGGGCATGTTGTCCATTGGCATTTGT--------------------AACCAGTTTCCTAT-TCTTGTGATTTAGGTGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTCCGGCCAGGCCTCAGAGATGTGGCATATCAGTATGTGAAAAAGGGGTAAGTTGAAGAAGGAAGGATCTTATGGATTGAATAGTTTAAAGAACTGATAAGAAGTGTTCTCATGGA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23843842 527 - 128169293 TCTCATTTGGTCTTGATGTTGCATTTCAGCCCTGAATCGTGTGCAGTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGCGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACAAATGAGATGTGGCGATCAGGGGAAAGTGAAGTTTATCAAATGGGTGAGTAGAAAAGACTGGGGTTTTACTTTTATCAGCAATAAATAGACATTATTTATTGCCAGTTACCTAATTTAGAGATAAACCACTTTAAACAAGATCTGTCT---TTCATTCTGTT-TGTTCTCT------------------TAGAAATTGTGACATTGGTTTTCCTGAGCATGTTGTCTGTTGGCATTTGT--------------------AACCAATTTCCTAT-TCTTATGATTTAGGCGATGTCAGTCAAAAGACAACGTGGCACAGAATATCAGTATTCCGGCCAGGCCTCAGAGATGTGGCGTATCAGTATGTGAGAAAGGGGTAAGTTGAAGAAGGAAGGATCTTATGGATTGAATGGTTAAAAGAACTGATAAGAAGTGTTCTCATGGC
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40476337 538 + 149736546 TTTCATTTCCTCTCTTCTTTGTATTTCAGCTCTGAATCGTGTTCAGTTACTTGGACGAGTAGGTCAGGACCCTGTCATGAGACAGGTGGAAGGAAAAAACCCAGTCACAATATTTTCTCTAGCAACAAATGAGATGTGGCGATCAGGGGATAGTGAAGTATACCAAATGGGTGAGTGTAAAAGGCCCTAG-TTGTTATTTATCAACAATAAGTAGACATTACTTATTATTTCTTACCTAA-TTATAAAAATGTTAACTTATAGGTAGTCTGGCTTTATTAGTTCTGtt-ctttttttttttttttttttttttAATAGAAATTGAAAGCTTGTTTTCCTGAGACATGTTCTGTGTTGGCATTTGTGTTACCTGCTGGCATCTATAACCTCATTTCCTGTATCTGGTGGTTTAGGTGACGTTAGTCAGAAGACGACGTGGCACAGAATATCAGTGTTTCGACCAGGCCTCAGAGATGTGGCATATCAGTATGTGAAAAAGGGGTAAGTTAGAG-----------------------------AAAGGGTCGGTAACAAGTGTTCTCTTGTC
i mm10.chr6                C 0 I 26
s canFam3.chr16             52175036 515 -  59632846 TCTCATTTTATTTACATGCTGCATTTCAGCTCTGAACCGTGTGCAGCTGCTTGGGCGAGTGGGTCAGGACCCTGTCATGAGGCAGGTAGAAGGGAAAAACCCAGTCACGATATTTTCTCTAGCGACAAATGAGATGTGGCGGTCAGGGGAGAGTGAAACATACCAAATGGGTGAGTATAAAACACTGGGGTTTTAATTGTATCAGCAATAAAGAGAC---GTTTATTCTCAGCTGA-----TTAGAGA-----CTCTTT----------CGTCT---CTAGTTCTGTTCCTTTCTCT------------------TACAAATTGTGGT-TTGGTTTTGCTGGGCATGTTGTCTTTTGGCATTTATTTTGTGTGCTGGCGTTTGTAACTGCATTTCCTAT-TCTTATGATTTAGGTGATGTCAGTCAAAAGACAACGTGGCACAGAATATCAGTATTCCGACCAGGTCTCAGAGATGTGGCATATCAGTATGTGAAAAAGGGGTAAGTTGAGGAAGGAAGGATCTTACAGATTG----GTTTAAAAAACTGGTAATAGGTGTTCTC-----
i canFam3.chr16            C 0 C 0

a score=177717.000000
s hg38.chr7_GL383534v2_alt    116658 59 +    119183 AAGGAGTGTGTAGTCTCTTAAATCCCTGAGTACTACTAATGACTGTATTAATTTAAGAG
s panTro4.chr7             143216430 59 + 161824586 AAGGAGTGTGTAGTCTCTTAAATCCCTGAGTACTACTTATGACTGTATTAATTTAAGAG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139042519 59 + 157549271 AAGGAGTGTGTAGTGTCTTAAATCCCTGAGTACTACTAATGACTGTATTAATTTAAGAG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93160534 59 + 110113093 AAGGAGTGTGTAATCTCTTAAATCCCTGAGTACTACTAATGACTGTATTAATGTAAGAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181054140 59 + 198365852 AAGGAGTGTGTAGCCTGTTAAATCCCTGAGTACTACTAATGACTGTATTAATTTAAGAG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174801723 59 + 192294377 AAGGAGTGTGTAGCCTGTTAAATCCCTGAGTACTACTAATGACTGTATTAATTTAAGAG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163469936 59 + 180432695 AAGGAGTGTGTAGCCTGTTAAATCCCTGAGTACTACTAATGACTGTATTAATTTAAGAG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110498055 58 + 127223203 AAGGAGTGTGTAGCCTCTTAAATTCCTGAGTA-TACTAATGACTGTATTAATTTAAGAG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23844369 59 - 128169293 AAGGAGTGTGTAGCCTATTAAATTCCTGAGTACTGCTAATGACTATATTAATTTAAGAG
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52175551 48 -  59632846 AGGGAATGCCTACCTCCTTTATTT------TACTATT----ACTCTGTTAGGTCAGGA-
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40476875 26 + 149736546 I

a score=1071458.000000
s hg38.chr7_GL383534v2_alt    116717 336 +    119183 GTATTTACTAAGTCCTTGATAC--TATATGCATGGCATGTTGCCATGTGTGACTAATTTGAAGATATATAAAACATAGTTTTAGCTTTCTAAGAACTTACAGTTTAGGGCAAACAGGGTGTGTACATAAATAGAAATAGATGAGGCAGGAGAGAAGGCAAAGTGTATCAAGTGGCATTTGA----------GCAAGTC---------AAACATC-T-----GCTTTGAGGAATTCCTGTGCCTCTGTGGCCGGGGATGCTGAGGGTGGCTTCTTGCCTGTTGGCTGCCACATGGTATTTCCAGCAGAGGATCTGGAATGTCTGAAGCCTGACATGCCAACTTCA-T--------CTTCGTGGCAGTTATTTT
s panTro4.chr7             143216489 336 + 161824586 GTATTTACTAAGTCCTTGATAC--TATATGCATGGCATGTTGCCATGTGTGACTAATTTGAAGGTGTATAAAACATAGTTTTAGCTTTCTAAGAACTTACAGTTTAGGGCAAACAGGGTGTGTACATAAATAGAAATAGATGAGGCAGGAGAGAAGGCAAAGTGTATCAAGTGGCATTTGA----------GCAAGTC---------AAACATC-T-----GCTTTGAGGAATTCCTGTGCCTCTGTGGCTGGGGATGCTGAGGGTGGCTTCTTGCCTGTTGGCTGCCACATGGTATTTCCAGCAGAGGATCTGGAATGTCTGAAGCCTGACATGCCGACTTCA-T--------CTTCGTGGCAGTTATTTT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139042578 336 + 157549271 GTATTTACTAAGTCCTTGATAC--TATATGCATGGCATGTTGCCATGTGTGACTAATTCAAAGGTATATAAAACATAGTTTTAGCTTTCTAAGAACTTACAGTTTAGGGCAAACAGGGTGTGTATATAAATAGAAATAGATGAGGCAGGAGAGAAGGCAAAGTGTATCAAGTGGCATTCGA----------GCAAGTG---------GAACATC-T-----GCTTTGAGGAATTCCTGTGCCTCTGTGGCCGGGGATGCTGAGGGTGGCTTCTTGCATGTTGGCTGCCACGTGGTATTTCCAGCAGAGGATCTGGAATGTCTGAAGCCTGATACGCGGACTTCA-T--------CTTCGTGGCAGTTATTTC
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93160593 336 + 110113093 GTATTTACTAAGTCCTTGATAC--TATAGGCGTGGCATGTTGCCATGTGTGACTAATTTGAAGGTGTATAAAACATAGTTTTAGCTTTCTAAGAACTTACAGTTTAGGGCAAACAGGGTGTGTACATAAATAGAAATAGATGAGGCAGGAGAGAAGGCAAAGTGTATCAAAAAGCATTTGA----------GCAAGTC---------AAACATC-T-----GCTTTGAGGAATTCCTGTGCCTCTGTGGCCGGGGATGCTGAGGGTGGCTTCTTGCCTGTTGGCTGCCACATGGCGTTTCCAGCAGAGGATCTGGAATGTCTGAAGCCTGACACACCAACTTCA-T--------CTTCATGGCAGTTATTTT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181054199 328 + 198365852 GTATTTACTAAGTCCTCGATACTATATATGCATGGCGTGTTGCCATGTGTGACTAATTAAAAGGTATATAAAACATAGTTTCAGCTTTCTAAGAGTTTACAGTTTAGGGCAAACAGGGTGTGTACATAAATAGAAATAGATGAGGCAGGAGAGAAGGCAAAGTG---------GCATTTGA----------GCAAGTG---------GAACGTC-T-----GCTTTCAGGAATTGCTGTGCCTCTGTGGCCGGGGATGCTGAGTGTGGCTCCTTGCCTGTTGGTTGCCATGTGCTG-TTCCAGCAGACAACCTGTCATGTCTGAAGCCTGACACGCCGACTTCA-T--------CTTCATGGCTGTTATTTT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174801782 328 + 192294377 GTATTTACTAAGTCCTCGATACTATATATGCATGGCGTGTTGCCATGTGTGACTAATTAAAAGGTATATAAAACATAGTTTCAGCTTTCTAAGAGTTTACGGTTTAGGGAAAACAGGGTGTGTACATAAATAGAAATAGATGAGGCAGGAGAGAAGGCAAAGTG---------GCATTTGA----------GCAAGTG---------GAACGTC-T-----GCTTTCAGGAATTGCTGTGCCTCTGTGGCCGGGGATGCTGAGTGTGGCTCCTTGCCTGTTGGTTGCCACGTGCTG-TTCCAGCAGACAACCTGTCATGTCTGAAGCCTGACACGCCGACTTCA-T--------CTTCATGGCTGTTATTTT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163469995 328 + 180432695 GTATTTACTAAGTCCTCGATACTATATATGCATGGTGTGTTGCCATGTGTGACTAATTAAAAGGTATGTAAAACAtagtttcagctttctaagaGTTTACAGTTTAGGGCAAACAGGGTGTGTACATAAATAGATAtagatgaggcaggagagaaggcaAAGTG---------GCATTTGA----------GCAAGTG---------GAACATC-T-----GCTTTCAGGAATTCCTGTGCCTCTGTGGCCGGGGATGGTGAGTGTGGCTCCTTGCCTGTTGGCTGCCACGTGCTG-TTCCAGGAGACAACCTGTCATGTCTGAAGCCTGACACGCCGACTTCA-T--------CTTCATGGCTGTTACATT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110498113 326 + 127223203 GTATTTACTAAGTCCTCGATAC--TATATGCATGGCGTGTTGCCATGTGTGACTAATTAAAAGGTATATAAAACATAGTTTTAGCTTTCTAAGAGTTTACAGTTTAGGGCAAACAGGGTGTGTACATAAATAGAAATAGATGAGGCAGGAGAAAAGGCAAAGTG---------GCATTTGA----------GCAAGTG---------GAACATC-T-----GCTCTCAGGAATTCCTGTGCCTCTGTGGCCGGGGATGCTGAGTGTGGCTTCTTGCCTGTTGGCTGCCACGTGGTG-TTCCTGCAGACAACCTGTCATGTCTGAAGCCTGACACTTCGACTTCA-T--------CTTCATGGCTGTTGTTTT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23844428 334 - 128169293 GTATTTATTAAGTCCTCCATAC--AATATGCATGGCATGTTGCCATATGTGACTAATTCAAAGGTATAAGAAACATATTTTTAGCTTTCTAGGAACTTAGAGTTCAGGGCAAACAAGGTGTGTACATAAATAGAAATAGATGAGGCAGGAGAGAAGGCAAAGTCTATCAAGTGCCATATGA----------GCAATTG---------ATGTAGCAT-----GCTTTTAGGAGTTCTTGTGTCT-TGTGACCAGGGATGCTGAGGGTGGCTTCTTGCCTGTTGGCATCCACATGATGTTTCCAGCAGAGGATCTGGAATGTCTGAAGCCTGACA--CTGACTCAA-T--------CTTCATGGCAGTTATTTT
i calJac3.chr8             C 0 I 326
s mm10.chr6                 40476901 312 + 149736546 GTATGTATTTATTCCTTAATAT--CCTGTTCATGGAAAGTCTC--------------------------------TGGTTTTAGCCC-------GCTGACAAGTTAGGACAAACAGCATCTGTACTTAAATAGAAATAAATGAGGCAAGATA-----CTGCGTG---------GCCATTGATTCTCCAGCTGCAGGTGCCTTTTGCAAAGCATC-TACAGCGTTTGTAGGATATCCTGTGTCCCTGTGATCAAGGATCATGGAGGTCATACCTGGACTCTGAGCAATCACTTAATGTCTTT---AGAGGATCTGGCCTATTTGATGTCTGATGTGCTAAGTTAT-TATGGTAGCTTTCACAGTAGttatttt
i mm10.chr6                I 26 C 0
s canFam3.chr16             52175599 303 -  59632846 -TATTTATTCAGAGCTTAGTAC--TATATGCATGGCGTGTTGCTATGTGTGACTAATTCAGAGGTGTATAAAACATGGTTT-AGTTTTCTGAGAACTTACAGCTTAGGACAAATAAGGATTGTTCGTGAATAGAAGCAGGTGAGACAAGAGAGAATGCAGAGCGTACTGAATGCCGTGTGA----------GCAAGGG---------CAACCCA-T-----GCTTTTAGGGATTCTCTTGTC--------------------------------ACCTCTTGGCATCCACGCAGAGTCCTTAACCCAGGATCTGGGACATCTGAAGCCTGACACACGGATGGCAGT--------GTTCACAGCAGTTATTTT
i canFam3.chr16            C 0 C 0

a score=1257597.000000
s hg38.chr7_GL383534v2_alt    117053 360 +    119183 ATATTTGATGATTTTCTGTAGGCTTAATAGTTCCCTTTTGGAAGGCTTGGATTGAGTATGTATAAAAAGTATGTTTTCCAAACTCATAGAAGGACAAAACGGTGTGTGTAACAGCAGTTGTATTGATAGTTAATATGTTTAGAAATGTACTTGTTTTGTAGAAAGAAA----ACATATTTTATGAAAAATAA-TTTAGCAATCACTAAAATT----TTTCTTTTCAATAACTGTATAGCTTTTCTTCCTATGTATCTTCATTGCCCTTTATGTA--TGTTTATGAATATGTGCACATACACACACAAACACATATAAGGTATTTCAAGGGAAGTGTCTGCACTCCCACTTACTGATTGATGGGTGTGTGTG
s panTro4.chr7             143216825 360 + 161824586 ATATTTGATGATTTTCTATAGGCTTAATAGTTCCCTTTTGGAAGGCTTGGATTGAGTATGTATAAAAAGTATGTTTTCCAAACTCATAGAAGGACAAAACGGTGTGTGTAACAGCAGTTGTATTGATAGTTAATATGTTTAGAAATGTACTTGTTTTGTAGAAAGAAA----ACATATTTTATGAAAAATAA-TTTAGCAATCACTAAAATT----TTTCTTTTCAATAACTGTATAGCTTTTCTTCCTATGTATCTTCATTGCCCTTTATGTA--TGTTTATGAATATGTGCACATACACACACAAACACATATAAGGTATTTCAAGGGAAGTGTCTGCACTCCCACTTACTGATTGATGGGTGTGTGTG
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139042914 362 + 157549271 ATATTTGATGATTTTCTATAGGCTTAATAGTTCCCTTTTGGAAGGCTTGGATTGAGTATGTATAAAAAGTATGTTTCCCAAACTTATAGAAGGACAAAATGGTGTGTATAACAGCAGTTGTATTGATAGTTAATATGTTTAGAAATGTACTTGTTTTGTAGAAATAAA----ACATATTTTATGAAAAATAA-TTTAGCAATCACTAAAATT----TTTCTTTTCAATAACTGTATAGCTTTTCTTCCTATGTATCTTCATTGCCCTTTATGTATGTGTTTATGAATATGTGCACATACACACACAAACACATATAAGGTATTTCAAGGGAAGTGTCTGCACTCCCGCTTACTGATAGATGGGTGTGTGTG
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93160929 362 + 110113093 ATATTTGATGATTTTCTATAGGCTTAATAGTTCCCTTTTGGAAGGCTTGGATTGAGTATGTATAAAAAGTATGTTTTCCAAACTCATAGAAGGACAAAATGGTGTGTGTAACAGCAGTTGTATTGATAGTTAATATGTTTAGAAATGTACTTGTTTTGTAGAAATGAA----ACATATTTTATGAAAAATAG-TTTAGCAATCACTAAAATT----TTTCTTTTCAATAACTGTATAGCTTTTCTTCCTATGTATCTTCATTGCCCTTTATGTATGTATTTATGAATATGTGCACATACACACACAAACACATATAAGGTATTTCAAGGGAAGTGTCTGCACTCCCGCTTACTGATAGATGGGTGTGTGTG
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181054527 356 + 198365852 ATATTTGATGATTTTCTATAGGCTTAATAGTTCCCTTTGGGAAGGCTTGGATTGAGTATGTGTAAAAAGTGTGTTTTCCAGACTCATAGAAGGACAAAATGGTGTGTGTAACAGCAGTTGTATTGATAGTTAATATGTTTAGAAATGTACTTGTTTTATAGAAATAAT-----CAAATTTCATGAAAAAGAA-TTTAGCAATCACTAAAATT----TTTCTTTTCAATAACTGTATAGCTTTT-TTCCTATGTATCTTCATTGCCCTTTATGTATGTGTTTATGAATATGTGCACATACACAC----ACACATATAAGGTATTTCAAGGGAACTGTCTGCACTCCCACTTACTGATTGATGGGTGTGTGTG
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174802110 352 + 192294377 ATATTTGATGATTTTCTGTAGGCTTAATAGTTCCCTTTGGGAAGGCTTGGATTGAGTATGTGTAAAAAGTATGTTTTCCAGACTCATAGAAGGACAAAATGGTGTGTGTAACAGCAGTTGTATTGATAGTTAATATGTTTAGAAATGTACTTGTTTTATAGAAATAAT-----CAAATTTCTTGAAAAAGAA-TTTAGCAATCACTAAAATT----TTTCTTTTCAATAACTGTATAGCTTTT-TTCCTATGTATCTTCATTGCCCTTTATGTATGTGTTTATGAATATGTGCACAT----AC----ACACATATAAGGTATTTCAAGGGAACTGTCTGCACTCCCACTTACTGATTGATGGGTGTGTGTG
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163470323 357 + 180432695 ATATTTGATGATTTTCTATAGGCTTAATAGTTCCCTTTGGGAAGGCTTGGATTGAGTATGTGTAAAAAGTATGTTTTCCAGACTCATAGAAGGACAAAATGGTGTGTGTAACAGCAGTTGTATTGATAGTTAATATGTTTAGAAATGTACTTGTTTTAtagaaataatcaaaacaaatttcatgaaaaagaa-tttagcaatcactaaaatt----tttcttttcaataactGTATAGCTTTT-TTGCTATGTATCTTCATTGCcctttatgtatgtgtttatgaatatgtgcacat----ac----acacacataaggTATTTCAAGGGAACTGTCTGCACTCCCACTTACTGATTGATGGGTGTGTGTG
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110498439 359 + 127223203 ATATTTGATGATTTTCTATAGGCTTAATAGTTCCCTTTTGGAAGGCTTGGATTGAGTATGTATAAAAAGTATGTTTTCCAAACTCATAGAAGGACAAAATGGTGTGTGTAACAGCAGTTGTATTGGTAGTTAATATGTTTAGAAATGTACTTGTTTTATAGAAATAATCAAAACAAATTTCATGAAAAAGAA-TTTAGCAATCACTAAAATT----TTTCTTTTCAATAAC--TATAGCTTTT-TTCCTATGTATCTTCATTGCCCTTTATGTATGTATTTATGAATATGTGCACATACACAC----ACACATATAAGGTATTTCAAGGGAATTGTCTGCACTCCCACTTACTGATTGATGGGTGTGTGTG
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23845088 353 - 128169293 ATATTTGATGTTTTTCTATAGGCTTCATAGATCCCTTT-GGAATGCTTGAATTGAGTATGTATAAAAGGCATCTTTTCCAAACTCGTGGAAGGACAAAATGGTGTGTGTAACAGCAGTTGTATTAATAGTTAATGTGTTTAGAAGTATACTTGTTTTGTAGAAATAAA----ACAAATTTCATGAAAAA------TAGCAGTCACTGAAATT----TTTC--TTAAATAACTGATTAGCTTTTCTTCATATGTATCTTCATTG-CCTTTATGTATGTGTTTATGAATATGTGCACATACACACACAAACACATATAAGGTATTTCAAGGTAAGTGTCTGCACTCCCACTTACTGATTGATGGATGTGTGTG
i calJac3.chr8             I 326 C 0
s mm10.chr6                 40477213 304 + 149736546 atatttaataaattttt-taGACCTAGTAATTCCCATTTGGAACACATAGGTTGATTATATATTGGAAGTATCTTTTCTGAATGTATAGAGTAACAAAAGAATTTTTGTGGATGTACTTTT------------TATGTTTAGAAATATACTTA-TTTGTGGAACTAAA------ATATTTCATGAGAAATAATTTTAGCAGTGACTAGAATTTCAATTTCTTTGCAATAATTACACACCTTTT----------------------CTTTATGTA----TATATGGATATATGAAGAC----AC----ATAAACATGGGCTATTTGAAGGAAAAGGTCAACA------------GAGAGA-GAGTGTGCGTG
i mm10.chr6                C 0 I 224
s canFam3.chr16             52175902 351 -  59632846 ATATTTGATAATTCTGTATCAGCTTAATAGTCCCCTTTTGGAATGCTTGGATTGATTACAAATAAAAAATATCTTTTCCAAACCTGTAGAAGGACAAAAAGTTGTGTTGAACAGCAGTTGTATTCATAGTTAACAT-TTTAGAAATGTACTTGTCTTATAGAAATGAA----CTATATTCTCCAAAATACAATTTTAGGaataaataaaattta--tttctttttaataaCTGCGTGACTTTT-TTTATATGTACTTCCATAGTCTTTTATGTATGTG----TGAATTTGCACATTTACACCCACATATAAATACAGGAAATT-------ATCTGTATGCAATTTCAGCCAC-AATTGATGAATCTGTGTG
i canFam3.chr16            C 0 C 0

a score=582942.000000
s hg38.chr7_GL383534v2_alt    117413 194 +    119183 ---------TGGGGTGGGGAGCACCTGATGTTTCACTAAT--------CTTTCTGTGTTGTAC-TTTTTTGGTGGTGGTAGACTCTCAAAACTGGTACTATTGTCATCTTTCCACTCTTGAAAATCACGATTAGGTTTGTTATCTAGTTTAGC-CTCTAGATAGTGTAGAAATAGTCTTAGTAATTACCTCTAAGTGGTATACTAAGCTGATA
s panTro4.chr7             143217185 192 + 161824586 ---------TGGGGTGGGGAGCACCTGATGTTTCACTAAT--------CTTTCTGTGTTGTAC-TTTTTTGGTGGTGGTAGA--CTCAAAACTGGTACTGTTGTCATCTTTCCACTCTTGAAAATCATGATTAGGTTTGTTATCTAGTTTAGC-CTCTAGATAGTGTAGAAATAGTCTTAGTAATTACCTCTAAGTGGTATACTAAGCTGATA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139043276 195 + 157549271 ---------TGGGGAGGGGAGCACCTGACATTTCACTAAT--------CTTTCTGTGTTGTAC-TTTTTTGGTGGTGGTAGACGCTCAAAACTGGTGCTATTGTCATCTTTCCACTCTTGAAAATCATGGTTAGGTTTGTTATCTAGTTTAGCTTTCTAGATAGTGTAGAAATAGTCTTAGTAATTACCTCTAAGTGGTATACTAAGCTGATA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93161291 195 + 110113093 ---------GGGGGTGGGGAGCACCTGACATTTCACGAGT--------CTTTCTGTGTTGTAC-TTTTTTGGTGATGGTAGACTCTCAAAACTGGTGCTATTGTCATCTTTCCACTCTTGAAAATCATGGTTAGGTTTGTTATCGAGTTTAGCCTTCTAGATAGTGTAGAAGTAGTCTTAGTAATTACCTCTAAGTGATATACTAAGCTGATA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181054883 182 + 198365852 ----------GGGGTGGGGAGCACCTGACATTTCACTGAT--------CTTTCTGTGTTGTAC-TTTTTTGGTGGTGGTAGACTCTCAAAACTGGTGCTATTGTCATTTTTCCACTCTTGAAAATCATGGTTAGGTTTGTTACCTAGTTTAGCCTTCTAGATAGTGTAGAAATAGTCTTAGTAATTACCT------------CTGAGCTGATA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174802462 182 + 192294377 ----------GGGGTGGGGAGCACCTGACATTTCACTGAT--------CTTTCTGTGTTGTAC-TTTTTTGGTGGTGGTAGACTCTCAAAACTGGTGCTATTGTCATTTTTCCACTCTTGAAAATCATGGTTAGGTTTGTTACCTAGTTTAGCCTTCTAGATAGTGTAGAAATAGTCTTAGTAATTACCT------------CTGAGCTGATA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163470680 181 + 180432695 ----------GGAGTGGGGAGCACCTGACATTTCACTGAT--------CTTTCTGTGTTGTAC-TTTTTTGGTGGTGGTAGACTCTCAAAACTGGTGCTATTGTCATTTTTCCACTCTTGAAAATCATGGTTAGGTTTGTTACCTAGTTTAGCC-TCTAGATAGTGTAGAAATAGTCTTAGTAATTACCT------------CTAAGCTGATA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110498798 182 + 127223203 ----------GGATTGGGGAGCACCTGACATTTCACTGAT--------CTTTCTGTGTTGTAC-TTTTTTGGTGGTGGTAGACTCTCAAAACTGGTGCTATTGTCATTTTTCCACTCTTGAAAATCATGGTTAGGTTTGTTACCTAGTTTAGCCTTCTAGATAGTGTAGAAATAGTCTTAGTAATTACCT------------CTAAGCTGATA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23845441 195 - 128169293 ---------GGGGGTGGGGAGCACCTGACATTTTACTAAT--------CTTTCTGTGTTGTAC-TTTTTTGGTGCTGGCAGACTCTCAAAATTGGTGCTGTTGTCATTTTTCCATCCTGGAAAATCATGGTTAGGTTTGTTATCTAGTTTAGCCTTCAAGATAGTGTAGAAATAGTCTTAGTAATTACCTGTAAGTGGTATACTAAGCTGATA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52176253 202 -  59632846 TGTTCCCTTTGGTAC--------CCAGTCATTTTACCAGTTTTGTCCACTTTCTATATTTTACTTTTTTTTTTTTTTTTGGACTCTGAAAATTGATGCCAGCATGCATTTTCTGCCCTTTAAAATCA--GTTACGGTTGTCTTGGGGTTCAGCCTTCTAAACAGTGCAGAAG-GGGCTTAGTAATTAACTCCAAGTGAAATGCTAAGCTGAAA
i canFam3.chr16            C 0 I 216
e mm10.chr6                 40477517 224 + 149736546 I

a score=262077.000000
s hg38.chr7_GL383534v2_alt    117607 100 +    119183 CAGTGTAGAAATAGTCTTAGTAATTAACTCAGGGTAATATTATACTAAACTAACTACAAATCCATATTTTGAATTTTAATCATCTAAGTTTCTAAGGTC------------A
s panTro4.chr7             143217377  96 + 161824586 AAGTGTAGAAATAGTCTTAGTAATTAACTTAGGGTAATATTATACTA----AACTACAAATCCATATTTTGAATTTTAATCATCTAAGTTTCTAAGGTC------------A
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139043471  96 + 157549271 CAGTGTAGAAATAGTCTTAGTAATTAACTCAGGGTAATATCATACTA----AGCTACAAATCCATATTTTGAATTTTAATCATCTAAGTTTCTAAGGTC------------A
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93161486  96 + 110113093 CAGTGTAGAAATAGTCTTAGTAATTAACTCACGGTAATATTACACTA----AGCTATAAATCCATATTTTGAATTTTAATTATCTAAGTTTCAAAGATC------------G
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181055065  96 + 198365852 CAGTGTAGAAATAGTCTTAGTGATTAATTCAGGGTAATATTATACTA----AGCTACAAATTCATATTTTGAATTTTAATCATGTAAGTTTCTAAGGTC------------A
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174802644  96 + 192294377 CAGTGTAGAAATAGTCTTAGTGATTAATTCAGGGTAATATTATACTA----AGCTACAAATTCATATTTTGAATTTTAATCATGTAAGTTTCTAAGGTC------------A
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163470861  96 + 180432695 CAGTGTAGAAATAGTCTTAGTGATTAATTCCGGGTAATATTATACTA----AGCTACAAATTcgtattttgaattttaatcatGTAAGTTTCTAAGGTC------------A
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110498980  96 + 127223203 CAGTGTAGAAATAGTCTTAGTGATTAATTCAGGGTAATATTATACTA----AGCTACAAATTCATATTTTGAATTTTAATCATGTAAGTTTCTAAGGTC------------A
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23845636  94 - 128169293 CAGTGTAGAAATAGTTTTA--------------GTAATATTATACTC----AGCCACAAATCCGTATTTTGAATTTTACTCATCTAAGTTTCTAAGGTCATGAACCTCACTA
i calJac3.chr8             C 0 C 0
e mm10.chr6                 40477517 224 + 149736546 I
e canFam3.chr16             52176455 216 -  59632846 I

a score=436785.000000
s hg38.chr7_GL383534v2_alt    117707 127 +    119183 TAGAAAATAATTGATAAATAAGTG-AAAAT---CAAGTCTGTTAGGGACTCCAAAATCAAAGGTCAAGGAAAATGATACATTGGAAATTATTCCTAGAGATTTAAATGTTGCCAC-------------------------TAAATTTCCCTTTGAA
s panTro4.chr7             143217473 127 + 161824586 TAGAAAATAATTGATAAATAAGTG-AAAAT---CAAGTCTGTTAGGGACTCCAAAATCAAAGGTCAAGGAAAATGATACATTGGAAATTATTCCTAGAGTTTTAAATGTTGCCAC-------------------------TAAATTTCCCTTTGAA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139043567 127 + 157549271 TAGAAAAGAATTGATAAATAAGTG-AAAAT---CAAGTCTGTTAGGGACTCCAAAATCAAAGGTCAAGGAAAATGATACATTGGAAATTATTCCTAGAGATTTAAAGGTTGCCAC-------------------------TAAATTGCCCTTTGAA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93161582 128 + 110113093 TAGAAAAGAATTGATAAATAAGTGAAAAAT---CAAGTCTGTTAGGGACTCCAAAATCAAAGGTCAAGGAAAATGATACATTGGAAATTATTCCTAGAGATTTAAAGGTTGCCAC-------------------------TAAATTGCCCTTTGAA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181055161 127 + 198365852 TAGAAAAGAATTGATAAATAAATG-AAAAT---TAAGTCTGTTAGGGACTCCAAAATCAAAGGTCAAGGAAAATGATACATTGTAAATTATTCCTAGAGATTTAAAGGTTGCCAC-------------------------TAAATTGCCCTTTGAA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174802740 127 + 192294377 TAGAAAAGAATTGATAAATAAATG-AAAAT---TAAGTCTGTTAGGGACTCCAAAATCAAAGGTCAAGGAAAATGATACATTGTAAATTATTCCTAGAGATTTAAAGGTTGCCAC-------------------------TAAATTGCCCTTTGAA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163470957 127 + 180432695 TAGAaaagaattgataaataaatg-aaaat---taagtcTGTTAGGGACTCCAAAATCAAAGGTCAAGGAAAATGATACATTGTAAATTATTCCTAGAGATTTAAAGGTTGCCAC-------------------------TAAATTGCCCTTTgaa
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110499076 127 + 127223203 TAGAAAAGAATTGATAAATAAATG-AAAAT---TAAGTCTGTTAGGGACTCCAAAATCAAAGGTCAAGGAAAATGATACATTGTAAATTATTCCTAGAGATTTAAAGGTTGCCAC-------------------------TAAATTGCCCTTTGAA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23845730 127 - 128169293 TAGAAAAGAATTGATAAGTAAATG-AAAAT---CAAGTGTGTTGGGGATTCCAAAATCAAAGATTAAGGAAAATGATACATTGAAAATTATTCCTGGAGTTTTAAAAGTTGCCAT-------------------------TACGTTGCTCTCTGAA
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52176671 155 -  59632846 TGGAAAGGAATTGAAAAATAAGCG-AAAATAGGCAAATCCTTTAGGGAGTCCAAAATGAAAAGTGGGAGACAATGACATGTTGGAAATCAGTCCTAGAGATTTAAAGGATGCCACGTGTTACTCTTCCATTTCATGGTCTTAAAGTCACTTTCAAA
i canFam3.chr16            I 216 I 134
e mm10.chr6                 40477517 224 + 149736546 I

a score=130013.000000
s hg38.chr7_GL383534v2_alt    117834 48 +    119183 CTGTTTTGTTTTATTTTT------------TAACTTCCGTAAGAGAAAT-------------------AGCTGACAGAT
s panTro4.chr7             143217600 48 + 161824586 CTGTTTTGTTTTATTTTT------------TAACTTCCGTAAGAGAAAT-------------------AGCTGACAGAT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139043694 43 + 157549271 C-----TGTTTTATTTTT------------TAACTTCCATAAGAGAAAT-------------------AGCTGACAGAT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93161710 48 + 110113093 CTGTTTTGTTTTATTTTT------------TAACTTCCATAAGAGAAAT-------------------AGCTGACAGAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181055288 48 + 198365852 CTGTTTTGTTTCATTTTT------------TAACTTCCATAAGAGAAAT-------------------AGCTGACAGAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174802867 48 + 192294377 CTGTTTTGTTTCATTTTT------------TAACTTCCATAAGAGAAAT-------------------AGCTGACAGAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163471084 47 + 180432695 ctgttttgtttca-tttt------------taacttcCATAAGAGAAAT-------------------AGCTGACAGAT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110499203 48 + 127223203 CTGTTTTGTTTCATTTTT------------TAACTTCCATAAGAGAAAT-------------------AGCTGACAGAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23845857 43 - 128169293 C-----TGTTTTAACTTT------------TGACTTCCATAAGGGGAAT-------------------AGCTGACAGAT
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52176960 79 -  59632846 ctgcctctctgtatgtttctcatgaataaataaatcttaaaaaaaaaATTTCAATAAGGACTGCTGTCAGCTGAAGGCT
i canFam3.chr16            I 134 C 0
e mm10.chr6                 40477517 224 + 149736546 I

a score=399179.000000
s hg38.chr7_GL383534v2_alt    117882 140 +    119183 GAAAACATTGTCTGTTTTACCTAGATGTTACCAAGTCTGTTTGG-----ACACTCTGTT---------TCAGTACTCCTAATCCTGAACCTTGAGAAGTG-GTAGCAAAAATTAGCTTATATATGATTATATATTTC--------ATCCTTGTCATATACTCA
s panTro4.chr7             143217648 140 + 161824586 GAAAACATTGTCTGTTTTACCTAGATGTTACCAAGTCTGTTTGG-----ACACTCTGTT---------TCAGTACTCCTAATCCTGAACCTTGAGAAGTG-GTAGCAAAAATTAGCTTATATATGATTATATATTTC--------ATCCTTGTCATATACTCA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139043737  83 + 157549271 GAAAACATTGTCCGTTTTACCTAGATGTTACCAAGTCTGTTTGG-----ACA--CCGTT---------TCAATACTCCTAAT----------------------------------------------------------------NNNNNNNNNNATACTCA
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93161758 136 + 110113093 GAAAACATT----GTTTTACCTAGATGTTACCAAGTCTGTTTGT-----ATACTCTGTT---------TCAGTACTCCTAATCCTGAACCTTGAGAAGTG-GTAGCAAAAATTAGCTTATGTATGATTATATATTTC--------ATCCTTGTGATATACTCA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181055336 140 + 198365852 GAAAACATTGTCTGTTTTACCTAGATGTTACCCAGTCTGCTTGT-----ACACTCTGTT---------TCAGTACTTCTAATCCTGAACCTTGAGAAGTG-GTAGCAAAAATTAGGTTATGTACGATTATATATTTC--------ATCCTTGTCATATACTCA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174802915 140 + 192294377 GAAAACATTGTCTGTTTTACCTAGATGTTACCCAGTCTGCTTGT-----ACACTCTGTT---------TCAGTACTTCTAATCCTGAACCTTGAGAAGTG-GTAGCAAAAATTAGGTTATGTACGATTATATATTTC--------ATCCTTGTCATATACTCA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163471131 140 + 180432695 GAAAACATTGTCTGTTTTACCTAGATGTTACCAAGTCTATTTGT-----ACACTCTGTT---------TCAGTACTTCTAATCCTGAACCTTGAGAAGTG-GTAGCAAAAATTAGGTTATGTACGATTATATATTTC--------ATCCTTGTCATATACTCA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110499251 140 + 127223203 GAAAACATTGTCTGTTTTACCTAGATGTTAGCAAGTCTGTTTGT-----ACACTCTGTT---------TCAGTACTTCTAATCCTGAACCTTGAGAAGTG-GTAGCAAAAATTAGGTTATGTACGATTATATATTTC--------ATCCTTGTCATATACTCA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23845900 138 - 128169293 GAAAACGTTGTctgttttatctatatgttatcaagtctgtttgt-----aca--ctgtt---------tcagtactcctaatcctgaacctttagaagtg-gtagcaaaaatgagattatgtatgaTGATATATTTC--------ATCCTTGTCATGTACTCA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40477741 109 + 149736546 GGTAACGCTGTCCTTCTTAACTAGAT-----------------T-----GCATTGTGTT---------TCAGTCCTCTTAGTTTTGAAATTGAAGACATGTTTAGCAAA-----------GTACAGT----TATTTC--------ATCTTCAGCTTGTACTTG
i mm10.chr6                I 224 C 0
s canFam3.chr16             52177039 161 -  59632846 GAGAACATTGTCTTTTTTACCTGGATG-TGTCGAGTCTGTGTGTCTGAAACCTTGTGTTTCAGTACTCTCAGTACTCCTAATGTTGAACTTTGAGATGTG-ATAGCAAAAATGAGGTTATGCATGATTCTGTGtttctttttaagattttatttatttattca
i canFam3.chr16            C 0 I 127

a score=6115.000000
s hg38.chr7_GL383534v2_alt    118022 2 +    119183 GT
s panTro4.chr7             143217788 2 + 161824586 GT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139043820 2 + 157549271 GT
i ponAbe2.chr7             C 0 I 64
s nomLeu3.chr13             93161894 2 + 110113093 GT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181055476 2 + 198365852 GT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174803055 2 + 192294377 GT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163471271 2 + 180432695 GT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110499391 2 + 127223203 GT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23846038 2 - 128169293 GT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40477850 2 + 149736546 CT
i mm10.chr6                C 0 C 0
s canFam3.chr16             52177327 2 -  59632846 ga
i canFam3.chr16            I 127 C 0

a score=162708.000000
s hg38.chr7_GL383534v2_alt    118024 62 +    119183 ACCACCC-TGA----CCTGA---------------------CTCTTATAAAGC--ATATTAAGATCT--C--AACTAAAAACTGTACATTTTAT
s panTro4.chr7             143217790 62 + 161824586 ACCACCC-TGA----CCTGA---------------------CTCTTATAAAGC--ATATTAAGATCT--C--AACTAAAAACTGTGCATTTTAT
i panTro4.chr7             C 0 C 0
s nomLeu3.chr13             93161896 62 + 110113093 ACCACCC-CGA----CCTGA---------------------CTCTTATAAAGC--ATATTAGGATCT--C--AACTAAAAACTGTACATTTTAT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181055478 62 + 198365852 ACCACCC-CGA----CCTGA---------------------CTCTTATAACGC--ATATTAGGATCT--C--AACTAAAAACTGTACATTTTAT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174803057 62 + 192294377 ACCACCC-CGA----CCTGA---------------------CTCTTATAACGC--ATATTAGGATCT--C--AACTAAAAACTGTACATTTTAT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163471273 62 + 180432695 ACCACCC-TGA----CCTGA---------------------CTCTTATAACGC--ATATTAGGATCT--C--AACTGaaaactgtacattttat
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110499393 62 + 127223203 ACCACCC-TGA----CCTGA---------------------CTCTTATAACGC--ATATTAGGATCT--C--AACTAAAAACTGTACTTTTTAT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23846040 60 - 128169293 AGCACCC-TGA----CCTGA---------------------GTCTTATAAAGC--ATATTAGGATCT--C--AGCTAAAAAC--TAAATTTTAT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40477852 61 + 149736546 ---ACCCATGT----CCTGA---------------------CACCTCGAAAGCCAGGATTAGAATCTACA--GACTAAAGACTGCATTTCT---
i mm10.chr6                C 0 C 0
s canFam3.chr16             52177329 89 -  59632846 gccaccc-aggcatcccTGATTCTGTGTTTCATCCTCCTCTCTCTTATAAAAC--AGATTGGAATCT--CCAGACTGAAAACTGTAAATTTTAT
i canFam3.chr16            C 0 C 0
e ponAbe2.chr7             139043822 64 + 157549271 I

a score=525706.000000
s hg38.chr7_GL383534v2_alt    118086 113 +    119183 TTATATCAGGTCTCGAATTTATTTGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACAATCATAGCTGGTAAGAAGCTTGTGA
s panTro4.chr7             143217852 113 + 161824586 TTATATCAGGTCTCGAATTTATTTGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACAATCATAGCTGGTAAGAAGCTTGTGA
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139043886 113 + 157549271 TGATATCAGGTCTCGGATTTATTTGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACAATCATAGCTGGTAAGAAGCTTGTGA
i ponAbe2.chr7             I 64 C 0
s nomLeu3.chr13             93161958 113 + 110113093 TTATATCAGGTCTCGAATTTATTTGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACAATCATAGCTGGTAAGAAGCTTGTGA
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181055540 110 + 198365852 TTATATCAGGTCTCGAATTTATTTGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACTATCATAGCTGGT---AAGCTTGTGA
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174803119 110 + 192294377 TTATATCAGGTCTCGAATTTATTTGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACTATCATAGCTGGT---AAGCTTGTGA
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163471335 113 + 180432695 ttatatcaggTCTCGAATTTATTTGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACTATCATAGCTGGTAAGAAGCTTGTGA
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110499455 113 + 127223203 TTATATCAGGTCTCGAATTTATTTGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACTATCATAGCTGGTAAGAAGCTTGTGA
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23846100 113 - 128169293 TTATATCAGATCTCGAATTTATGTGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACAATCATAGCTGGTAAGAAGCTTGTGA
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40477913 113 + 149736546 TTATATCAGGGCTCGTATATTTGTGGAAGGGAAAGTGGACTATGGCGAGTACATGGATAAAAACAATGTGAGGCGGCAAGCAACAACAATCATAGCTGGTAAGAAGCTCGTGG
i mm10.chr6                C 0 I 87
s canFam3.chr16             52177418 113 -  59632846 TTTTACTAGGTCCCGAATTTATGTAGAAGGGAAAGTAGACTATGGTGAATACACAGACAAAAATAATGTGAGGCGACAAGCAACAACAATCATAGCTGGTAAGAAGCTTGTGA
i canFam3.chr16            C 0 C 0

a score=252926.000000
s hg38.chr7_GL383534v2_alt    118199 93 +    119183 AAATAGCTGTTTTTTTCTTTTTCTCCTTTTCTT--TTTTAAAAGCTTGGCTACACTG----TAACTAACT------AGGGTTAAGAGTACCAGTACTTATGAGTT
s panTro4.chr7             143217965 92 + 161824586 AAATAGCTG-TTTTTTCTTTTTCTCCTTTTCTT--TTTTAAAAGCTTGGCTACACTG----TAACTAACT------AGGGTTAAGAGTACCAGTACTTATGAGGT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139043999 88 + 157549271 AAATAGCTGTTTTTTTCTTTTTCTC-----CTT--TTTTAAAAACTTGGCTACATTG----TAACTAACT------AGGGTTAAGAGTACCAGTACTTACGAGGT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93162071 96 + 110113093 AAATATCTG-TTTTTTCTTTTTCTCCTTTTCTT--TTTTAAAAGCTTGGCTATATTGTAACTAACTAACT------AGGGTTGAGAGTACTAGTACTTACGAGGT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181055650 92 + 198365852 AAATAGCTG-TTTTTCCGTTTTCTCCTTTTCTT--TTTCAAAAGCTTGGCTACACTG----TAACTAACT------AGGGTTAAGAGTACTAGTACTTAGGAGGT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174803229 92 + 192294377 AAATAGCTG-TTTTTCCGTTTTCTCCTTTTCTT--TTTCAAAAGCTTGGCTACACTG----TAACTAACT------AGGGTTAAGAGTACTAGTACTTAGGAGGT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163471448 92 + 180432695 AAATAGCTG-tttttccgttttctccttttctt--tttcaaaagcttGGCTACAGTG----TAACTAACT------AGGGTTAAGAGTACCAGTACTTAGGAGGT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110499568 92 + 127223203 AAATAGCTA-TTTTTCCGTTTTCTCGTTTTCTT--TTTCAAAAGCTTGGCTACATTG----TAACTAACT------AGGGTTAAGAGTACCAGTACTTAGGAGGT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23846213 96 - 128169293 TAATAACTG-TTTTTTCTTCTTCTCCTTTTCTT--TCTTAAAAGCTTAGCAACACTGTAAGTAACTAACT------AGGGTTGAGAGTACCAGTTCCTGTGAGGC
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52177531 92 -  59632846 TAATA-----CTATTCCCTCCTCCCATCCCCCTTGTTTTAAACCCTTGGCT----TG----TAAGCGACTTTCATGGGGGCTTTGAGTGCTGCTGCTGAGATTGT
i canFam3.chr16            C 0 C 0
e mm10.chr6                 40478026 87 + 149736546 I

a score=590437.000000
s hg38.chr7_GL383534v2_alt    118292 172 +    119183 AAGGCAACTCACTAGAAGATGTCCATAACTCTTATTTCTCTACTTGCTAAGAGTTTGTACATTTATCCCTTCCTTTAAAAAATTATTTTTATACTTACAGTTTTAG-TCACAAGTAACTTTTGAATAAAGCCTAAAACTGAATTATCCATCCCAGTACTT-ATTGTT------GAGAATT
s panTro4.chr7             143218057 172 + 161824586 AAGGCAACTCACTAGAAGATGTCCATAACTCTTATTTCTCTACTTGCTAAGAGTTTGTACATTTATCCCTTCCTTTAAAAAATTATTTTTATACTTACAGTTTTAG-TCACAAGTAACTTTTGAATAAAGCCTAAAACTGAATTATCCATCCCAGTACTT-ATTGTT------GAGAATT
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139044087 172 + 157549271 AAGACAACTCACTAGAAGATGTCCATGACTCTGATTTCTCTACTTGCTAAGAGTTTCTACATTTATCCCTTCCTTTAAAAAATTATTTTTATACTCACAGTTTTAG-TCACAAGTAACTTTTGAATAAAGCCCAAAACTGAATTGTCCATCGCAGTACTT-ATTGTT------GAGAACT
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93162167 172 + 110113093 AAGGCAACTCACTAGAAGATGTCCATGACTCTGATTTCTCTACTTGCTAAGAGTTTCTACATTTATCCATTCCTTTAAAAAATTATTTTTATACTCACAGTTTTAG-TCACAAGTAACTTTTGAATAAAGCCTAAAACTGAATTGTCCATCCCAGTACTT-ATTGTT------GAGAATT
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181055742 172 + 198365852 AAGGCAACTCACTAGAAGATGTCCATGACACTGATTTCTCTACATGGTAAGAGTCTCTACATTTATCCATTCCTTCAAAAAATTATTTTTATACTCACAGTTTTAG-TCACCGGTAACTTTTGAATAAAGCCTAAAACTGAATTGTCCATCCCAGTACTT-ATTGTT------GAGAATT
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174803321 172 + 192294377 AAGGCAACTCACTAGAAGATGTCCATGACACTGATTTCTCTACATGGTAAGAGTCTCTACATTTATCCATTCCTTTAAAAAATTATTTTTATACTCACAGTTTTAG-TCACCAGTAACTTTTGAATAAAGCCTAAAACTGAATTGTCCATCCCAGTACTT-ATTGTT------GAGAATT
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163471540 172 + 180432695 AAGGCAACTTACTAGAAGATGTCCATGACTCTGATTTCTCTACATGGTAGGAGTCTCTACATTTAtccattcctttaaaaaattatttttatactcacAGTTTTAG-TCACCAGTAACTTTTGAATAAAGCCTAAAACTGAATTGTCCATCCCAGTACCT-ATTGTT------GAGAATT
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110499660 172 + 127223203 AAGGCAACTCACTAGAAGATGTCCGTGACTCTGATTTCTCTACATGGTAAGAGTCTCTACATTTATCCATTCCTTTAAAAAATTATTTTTATACTCACAGTTTTAG-TCACCAGTAACTTTTGAATAAAGCCTAAAACTGAATTGTCCATCCCAGTACTT-ATTGTT------GAGAATT
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23846309 173 - 128169293 GAGGCAACTCACTAGAAGATGCCCATGACTCTGATTTCTCTACTTGCTAAGAGTTTCTACGTTTATCCATTCCTGTAAAAAGTTATTTTTATACTCACAGTTTTAGTTCACAAGTAACTTTTGAATAAAGCCTAAAACTGAATTGTCAAGGCAAGTACCT-GTTGTT------GAGAATT
i calJac3.chr8             C 0 C 0
s mm10.chr6                 40478113 173 + 149736546 CAGGAAACTCCCCAGGGGAC-TTCGTCCTGTTCCTTTTCCTGTGTGCTAATGTTGTCCACATTTATTTATTCCTTTAAAAGGCTCTCTGTCTACTCACATGTTTAG-TTCAGGGGGACTCT---GTGGGGTATGAAAGCAACTTGCCCCT-GCAGTACAT-ACTGTTAACTTGGAGAATT
i mm10.chr6                I 87 N 0
s canFam3.chr16             52177623 157 -  59632846 CAGGCAGCTCACCATGAGAAG--CGGGAGTCTGGTTTGTGAGTTTGCTATGAGTTTCTGCATTTGCCTGACCCTTCAGAAAATTATCTCTATAC--ACAGTTTCATTTCACAGGTAACTTTGGAGTAAAGC-------------GTTTGTGTCAGTACTTAACTGTT------TGAAGTG
i canFam3.chr16            C 0 C 0

a score=466007.000000
s hg38.chr7_GL383534v2_alt    118464 168 +    119183 ACAAAAACTCTGAATGTATTGTCTTTTGGAAGGATCTAGCCCTAACCAGG----AAGAAGCGTATGCCAAGATAAGAATTACACTAA----TGTGAGTG--------------TGCAGATTTATTCGGAACCTCTTTGGTACTTAG-TATG-TGAAATTTCTATTTGAAATTAAGAt-----------ttttttaat----------------------------------tttatt
s panTro4.chr7             143218229 168 + 161824586 ACAAAAGCTCTGAATGTATTGTCTTTTGGAAGGATCTAGCCCTAACCAGG----AAGAAGCGTATGCCAAGATAAGAATTACACTAA----TGTGAGTG--------------TGCAGATTTATTGGGAACCTCTTTGGTACTTAG-TATG-TGAAATTTCTATTTGAAATTAAGAt-----------ttttttaat----------------------------------tttatt
i panTro4.chr7             C 0 C 0
s ponAbe2.chr7             139044259 168 + 157549271 ACAAAAACTCTGAATGTATTGTCTTTTGGAAGGATCTAGCCCTAACCAGG----AAGAAGCGTATGCCAAGATAAGAATTACACTAA----TGGGAGTG--------------TGCAGATTTATTCAGATCCTCTTTGGTACTTAG-TATG-TGAAATTTCTGTTTGAAATTAAGAt-----------ttttttaat----------------------------------tttatt
i ponAbe2.chr7             C 0 C 0
s nomLeu3.chr13             93162339 200 + 110113093 ACAAAAA--CTGAATGTATTGTGTTTTGGAAGGATCTAGCCCTAACCAGG----AAGAAGCGTATGCCAAGATAAGAATTACACTAA----TGTGAGTG--------------TGCAGATTTATTTGGAAACTCTTTGGCACTTAG-TATG-CGAAATTTCTATTTGAAATTAAGAT-----------TTTTTAAattttattttattttattttattttattttattttatttatt
i nomLeu3.chr13            C 0 C 0
s rheMac3.chr3             181055914 171 + 198365852 ACCAAAA--CTGAATGTATTGTCTTTCGGAAGGCTCTAGCCCTAACCAGG----AAGAAGCATATGCCAAGATAAGAATTACACTAA----TGTGAGTG--------------TGCAGATTTGTTCAGAACCTCTTTGGTACTTAG-TATGCTGAAATTTCTATTTGAAATTAAGAttttt-------ttttttaat----------------------------------tttatt
i rheMac3.chr3             C 0 C 0
s macFas5.chr3             174803493 178 + 192294377 ACCAAAA--CTGAATGTATTGTCTTTCGGAAGGCTCTAGCCCTAACCAGG----AAGAAGCATATGCCAAGATAAGAATTACACTAA----TGGGAGTG--------------TGCAGATTTGTTCAGAACCTCTTTGGTACTTAG-TATGCTGAAATTTCTATTTGAAATTAAGAttttttttttaattttttaat----------------------------------tttatt
i macFas5.chr3             C 0 C 0
s papAnu2.chr3             163471712 171 + 180432695 ACCAAAA--CTGAATGTATTGTCTTTCGGAAGGCTGTAGCCCTAACCAGG----AAGAAGCATATGCCAAGATAAGAGTTACACTAA----TGTGAGTG--------------TGCAGATTTATTCAGAACCTCTTTGGTACTTAGAGGTGCTGAAATTTCTATttgaaattaagatttt--------ttttttaat----------------------------------tttatt
i papAnu2.chr3             C 0 C 0
s chlSab2.chr21            110499832 170 + 127223203 ACCAAAA--CTGAATGTATTGTCTTTCGGAAGGCTCTAGCCCTAACCAGG----AAGAAGCATATGCCAAGATAAGAATTACACTAA----TGTGAGTG--------------TGCAGATTTATTCAGAACCTCTTTGGTACTTAG-TATGCTGAAATTTCTATTTGAAATTAAGATTTT--------TTATTTTAT----------------------------------TTTAtt
i chlSab2.chr21            C 0 C 0
s calJac3.chr8              23846482 172 - 128169293 ACAGAAA--CTTAATGTATTATCTTTTGGAGGGATCTAGCCCTAACCAGGAAGAAAGAAGCATGTGCTGAGATAAGAGTTACACTAA----TGTGAGCA--------------TGCAGATTTATTTGGAACCGCTTTGGTACTTAG-TATGCTGAAATTTCTATTTGAAATTAAGAAG----------tttttttat----------------------------------tttatt
i calJac3.chr8             C 0 C 0
s canFam3.chr16             52177780 160 -  59632846 AGAGAAA--CTAA------TGTCTTT---GAGGACATGG-CCTACATAGG----CAGAAGCCTGTGCCGAGAT-AGAGTTGCGCTGGCTGCTGTTAGTGGCTTTAGACGTTTATGCAGGCTTATTCACAGCCTGCTTGGT-CTTGA-CATG-------------ATGATTTTAAGTT-----------CCTGTTGTT----------------------------------TTTGTT
i canFam3.chr16            C 0 N 0

a score=1435456.000000
s hg38.chr7_GL383534v2_alt    118632 551 +    119183 ttttttgagccagaatctcactctgtcacccaggctggagtgcaatggcacaatctcggctcattgcaacctctgtctcctggattcaagtgattctcctgcctcagcctc-ctgagtagctaggattataggtgcgtgcc-acaccacctggctaa-tttttgtaattttcgtagaggcggggtttcaccatgttggtcaggctggtcttgaactcctgacctcaggtgatccatccacctcggcctcccaaagttgtgagattacaggcatgagccactgtgcccagccAAGAAGttttta-attttctctttttttgtttttgttttgagacagggtctccctctgtcaaccaggctggagtgcaatggtgtgatcacagctt-actgcagcctctacctccccaggctcaggtgatcttcccacctcagccttctcccaagtagctgggacaacaggtgtacaccatcatgcctggc-taatttgtcaa-tttttttgtagagatgaggtttcaccatgttgcccaggctggtctcaaactgctgggctcaaat
s panTro4.chr7             143218397 551 + 161824586 ttttttgagccagaatctcactctgtcacccaggctggagtgcaatggcacaatctcggctcattgcaacctctgtctcctggattcaagtgattctcctgcctcagcctc-ctgagtagctaggattataggtgcgtgcc-acaccacctggctaa-tttttgtaattttcgtagaggcagggtttcaccatgttggtcaggctggtcttgaactcctgacctcaggtgatccatccacctcggcctcccaaagttgtgagattacaggcatgagccactgtgcccagccAAGAAGttttta-attttctctttttttgtttttgttttgagacagggtctccctctgtcaaccaggctggagtgcagtggtgtgatcacagctt-actgcagcctctacctccccaggctcaggtgatcttcccacctcagccttctcccaagtagctgggacaacaggtgtacaccatcatgcctggc-taatttgtcaa-tttttttgtagagatgaggtttcaccatgttgcccaggctggtctcaaactgctgggctcgaat
i panTro4.chr7             C 0 N 0
s ponAbe2.chr7             139044427 552 + 157549271 ttttttgagccagaatctcactctgtcacccaggctggagtgcaatggcacgatctcggctcattgcaatgtctgtctcctggattcaagtgattctcctgcctcagcctc-ctgagtagctaggattataggtgcgtgcc-acaccacctggctaa-tttttgtaattttcgtagaggcggggtttcaccatgttggtcaggctggtcttgagctcctgacctcaggtgatccatccgcttcggcctcccaaagttgtgagattacaggcatgagccactgcgcccagccAAGAAGTTTTTA-ATGttctctttttttgtttttgttttgagacagggtctccctctgtcaaccaggctggagtgcaatggcgtgatcacagcttaactgcagcctctacctccccaggctcaggtgatcttcccacctcagccttctcctgagtagctgggactacaggtgtacaccatcatgcctggc-taatttgtcaa-tttttttgtagagatgaggtttcaccacgttgcccagactggtctccaactgccgggctcaaat
i ponAbe2.chr7             C 0 N 0
s nomLeu3.chr13             93162539 506 + 110113093 ttttttgagacggagtctcgctctgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaagctctgcctcccgagttcacaccattctcctgcctcagcctctccgagtagctgggactacaggcgcccgcc-accacgcccggctaattttttgtatttttagtagagacggggtttcacca------------tggtctcgatctcctgacctc--gtgatccgcccgcctcagcctcccaaagtgctgggattacaagcgtgagccaccgcacccggcc-----------------------------TCttttttttgagacagaatctcactctgtcgcccaggctggagtgcaatggcatgatctcacctc-gttgcaacttctgtct-cctgggttcaagtgattctcctccctcagc---ctcctgagtagctaggattataggtgtgtgccacaccgcctggc-taatttttgta--attttcgtagaggcggggtttcaccctgttggtcaggctggtcttgaactcctgacctcaggt
i nomLeu3.chr13            C 0 N 0
s rheMac3.chr3             181056085 547 + 198365852 ttttctgagacagagtctcactctgttgcccaggctggagtgcaatggcacgatcttggctcattgcaacctccatctcccgggttcgagtggttctcctgcctcagcctc-ctgagtagctagggtaataggtgtgtgcc-gtaccgcctggcaaa-tttttgtaattttcatagagatggggtttcaccatgtt----aggctggtcttgaactgctgacctcaggtgatccatccgcctcggcctccctaagttgtgatattacaggcatgagccaccgcgcccagcTAGGAAGTTTTTA-ATAttctctttttttgtttttgttttgagacagtgtctccctatgtcaaccaggctttagtgcaatggtgtaatcacagctt-actgcagcctgtacctccccaggctcaggtgatcttcccacctcagccttctcctgagtagctgggactacaggtgtacaccaccacgcctggc-taatttgtcaa-tttttttgtagagatgaggtttcactacattgcgcaggctggtctcaaactgctgggctcaaat
i rheMac3.chr3             C 0 N 0
s macFas5.chr3             174803671 527 + 192294377 ttttctgagacagagtctcactctgttgcccaggctggagtgcaatggcacgatcttggctcattgcaacctccgtctcccgggttcgagtggttctcctgcctcagcctc-ctga--------------------gtgcc-gtaccgcctggcaaa-tttttgtaattttcatagagatggggtttcaccatgtt----aggctggtcttgaactgctgacctcaggtgatccatctgcctcggcctcccaaagttgtgacattacaggcatgagccaccgcgcccagcTAGGAAGTTTTTA-ATAttctctttttttgtttttgttttgagacagtgtctccctctgtcaaccaggctttagtgcaatggtgtaatcacagctt-actgcagcctctacctccccaggctcaggtgatcttcccacctcagccttctcctgagtagctgggactacaggtgtacaccaccacgcctggc-taatttgtcaa-tttttttgtagagatgaggtttcactacgttgcgcaggctggtctcaaactgctgggctcaaat
i macFas5.chr3             C 0 N 0
s papAnu2.chr3             163471883 547 + 180432695 ttttctgagacagagtctcactctgttgcccaggctggagtgcagtggcatgatcttggctcattgcaacctccgtctcccgggttcaagtggttctcctgcctcaacctc-ctgagtagctagggtaATAGGTGTGTGCC-ATaccgcctggcaaa-tttttgtaattttcatagagatggagtttcaccatgtt----aggctggtcttgaactgctgacctcaggtgatccatctgcctcggcctcccaaagttgtgacattacaggcatgagccaccgcgcccagctaggaagttttta-atattctgtttttttgtttttgttttgagacagtgtctccctctgtcaaccaggctttagtgcaatggtgtaatcacagctt-actgcagcctctacctccccaggctcaggtgatcttcccacctcagccttctcctgagtagctgggactacaggtgtacaccaccacgcctggc-taatttgtcaa-tttttttgtagagatgaggtttcactacattgcccaggctggtctcaaactgctgggctcaaat
i papAnu2.chr3             C 0 N 0
s chlSab2.chr21            110500002 547 + 127223203 ttttctgagacagagtctcactctgttgcccaggctggagtgcaatggcacgatcttggctcattgcaacctccgtctcccgggttcgagtggttctcctgcctcagcctc-ctgagtagctagggtaataggtgtgtgcc-acaccgcctggcaaa-tttttgtaattttcatagagatggggtttcaccatgtt----aggctggtcttgaactgctgacctcaggtgatccatccgccttggcctcccaaagttgtgacattacaggcatgagccaccgcgcccagccAGGAAGTTTTTA-ATAttctctttttttgtttttgttttgagacagtgtctccctctgtcaaccaggctttagtgcaatggtgtaatcacagctt-actgcagcctctacctccccaggctcaggtgatcttcccacctcagccttctcctgagtagctaggactacaggtgtacaccaccacgcctggc-taatttgtcaa-tttttttgtagagatgaggtttcactacgttgcccaggctggtctcaaactgctgggctcaaat
i chlSab2.chr21            C 0 N 0
s calJac3.chr8              23846654 550 - 128169293 ttttttgagacagagt----ctctgttgccaaggctggagtgcaatggcatgatctcagctcactgcagcctccgcctttcaggtgcaaacgattctcctgtctcagcctt-ccaagtagctgggattacaggcacctgccaaccacacccagctaa-tttttgtatttttcacagagacggggtttcaccatgttggtcggggtggtctcgaactcctgatctcaggtgatccacccgcctcggcctcccaaagtgctgggattataggcgtgagccactgtgctcagccAAGAAGTTTATATGTTATCtttttttttgtttttagtttgagatagggtctccctctgttgaccaggctggagtgcaatggtgtgatcacagctt-actgcagtctctacctccccaggctcagatgatc-tcccacctcagccttctcctaagtagctgaaacaacaggcatacaccaccactcctggcttaatttttcaattttttttgtagagacgaggtttcaccacattacccaggcttgtctcaaattcctgggctcaaat
i calJac3.chr8             C 0 N 0

