##maf version=1 scoring=roast.v3.3
a score=46360.000000
s hg38.chr14_GL000009v2_random        4 176 +    201709 TCTGTGAAAGCCTGTAGCTATAAAAAAATGTTGAGCCATAAATACCATCAGAAATAACAAAGGGAGCTTTGAAGTATTCTGAGACTTGTAGGAAGGTGAAGTAAATATCTAATATAATTGTAACAAGTAGTGCTTGGATTGTATGTTTTTGATTATTTTTTGTTAGGCTGTGATGG
s panTro5.chr9                 41641682 175 + 116767853 TCTGTGAAAGCCTGTAGCTATAAAAAA-TATTGAGCCATAAATACCATCAGAAATAGCAAAGGGAGCTTTGAAGTATTCTGAGACTTGTAGGAGGGTGAAGTAAATACCTAATATAATTGTAATAAGTAGTGCTTGGATTGTATGTTTTTGATTAATTTTTGTTAGGCTGTGATGG
i panTro5.chr9                 N 0 C 0
s gorGor5.CYUI01000530v1          60019 175 -    116138 TCTGTGAAAGCCTGTAGCTATAAAAAA-AGTTGAGCCATAAATACCATCAGAAATAGCAAAGGGAGCTTTGAAGTATTCTGAGACTTGTAGGAGGGTGAAGTAAATACCTAATATAATTGTAATAAGTAGTGCTTGGATTGTATGTTTTTGATTATTTTTTGTTAGGCTGTGATGG
i gorGor5.CYUI01000530v1       N 0 C 0

a score=95766.000000
s hg38.chr14_GL000009v2_random       180 182 +    201709 GCTCAAGTAATTGAAATTCCTGATGCAAGTAATACAGATGGATTCAGGAGAGGTACTTCCAGGGGGTCAAGGGGAGAAATACCTGTTGGGGGTCAATGCCCTCCTAATTCTGGAGTAGGGGCTAGGCTAGAATGGTAGAATGCTCAAAAGAATCCAGCGAAGAGGAATATTTCTGAGATAAT
s panTro5.chr9                  41641857 182 + 116767853 GCTCAAGTAATTGAAACTCCTGATGCAAGTAATACAGATGGATTCAGGAGAGGTACTTCCAGGGGGTCAAGGGGAGAAATACCTGTTGGGGGTCAATGTCCTCCTAATTCTGGAGTAGGGACTAGGCTAGAATGGTAGAATGCTCAAAAGAATCCAGCAAAGAGAAATATTTCTGAGATAAT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1           60194 181 -    116138 GCTCAAGTAATTGAAACTCCTGATGCAAGTAATACAGATGGATTCAGGAGAGGTACTTCCA-GGGGTCAAGGGGAGAAAAACCTGTTGGGGGTCAATGTCCTACTAATTCTGGAGTAGGGGCTAGGCTAGAATGGTAGAATACTCAAAAGAATCCAGCGAAGAGAAATATTTCTGAGATAAT
i gorGor5.CYUI01000530v1       C 0 C 0
s ponAbe2.chr1                 105600502 182 + 229942017 GCTCAAGTAATTGAAACTCCTGATGCAAGTAATACAGATGTATTCAGGAGAGGTACTTCCAGGGGGTCAAGGGGAGAAATACCTGTTGGGGGTCAATGTCCTCCTAATTCTGGAGTAGGGGCTAGGCTGGAATGGTAGACTGCTCAAAAGAATCCAGCGAAGAAAAGTATTTCCGAGATAAT
i ponAbe2.chr1                 N 0 C 0

a score=1436.000000
s hg38.chr14_GL000009v2_random       362 4 +    201709 -AAAT
s panTro5.chr9                  41642039 4 + 116767853 -AAAT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1           60375 4 -    116138 -AAAT
i gorGor5.CYUI01000530v1       C 0 C 0
s ponAbe2.chr1                 105600684 4 + 229942017 -AAAT
i ponAbe2.chr1                 C 0 C 0
s tarSyr2.ABRT02280520v1            1922 4 -      4037 AAAA-
i tarSyr2.ABRT02280520v1       N 0 N 0

a score=199540.000000
s hg38.chr14_GL000009v2_random       366 390 +    201709 AGGACTGTCCCATATTGGAGGCCTTTTTGAACAGTTGTTGTATGGTGACCCTGAAATGTACTTTCTCAGATACAGAACACCCTTGGTCAATTGAATACAGATCAATCACTTTAAGTAAGCTAAGTCCTTACTAAATTGATGAGACTTAAACCCATGAAAACTTAACAGCTAAACTCCCTAGTCAACTGGTTTGAATCTACTTCTCCAGCAGCTGGGGGAAAAAAGGTGAGAGAAGCAGGATTGAAGCTGCTTCTTTGAATTTACAATTCAACATGAAAATCACCTTGGGACTGGTAAAAACAGGCGTTGACCTCTGTTTTTAGATGTACAGTCTAATGCCCTACTCAGTCATTTTACCCTTTTTTCTCACTTCATTTATGTTGGCTGACA
s panTro5.chr9                  41642043 390 + 116767853 AGGACTATCCCATATTGGAGGCCTTTTTGAACAGTTGTTGTATGGTGGCCCTGAAATGTACTTTCTCAGATACAGATCACCCTTGATCAATTGAATACAGATCAATCACTTTAAGTAAGCTAAGTCCTTACTAAATTGATGAGACTTAAACCCACAAAAACTCAACAGCTGAACTCCCTAGTCAACTGGTTTGAATCTATTTCTCCAGCCGCTGGGGGAAAAAAGGTGAGAGAAGCAGGATTGAAGCTGCTTCTTTGAATTTACAATTCAACATGAATATCACCTCGGGACTGGTAAAAACAGGCCTTGACCTCTGTTTTTAGATGTACAGTCTAATGCCTTACTCAGTCATTTTACCCTTTTTTCTCACTTCATTTATGTTGGCTGACA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1           60379 390 -    116138 AGGACTATCCCATATTGGAGGCCTTTTTGAACGGTTGTTGTATGGTTGTCCTGAAATGTACTTTCTCAGATACAGATCACCCTTGGTCAATTGAATACAGATCAATCACTTTAAATAAGCTAAGTCCTTACTAAATTGATGAGACTTAAACCCACGAAAACTTAACAGCTAAACTCCCTAGTCAACTGATTTGAATCTACTTCTCCAGCTGCTGGGGGAAAAAAGGTGAGAGAAGCAGGATTGAAGCTGCTTCTTTGAATTTACAATTCAACATGAAAATTACCTCGGGACTGGTAAAAACAGGCCTTGACGTCTGTTTTTAGATGTACAGTCTAATGCCCTACTCAGTCATTTTACCCTTTTTTCTCACTTCATTTATGTTGGCTGACA
i gorGor5.CYUI01000530v1       C 0 C 0
s ponAbe2.chr1                 105600688 383 + 229942017 AGGACTATCCCATATCGGAGGCCTTTTTGAGCA---GTTGTGTGGTGGCCCTGAAATGTACCTTGTCAGATACAGATCACCCTTGGTCAGTTGAATACAGATCAATCACTT----TAAGCTAAGTCCTTACTAAGTTGATGAGACTTAAACCCACGAAAACTTAACAGCTAAACTCCCTAGTCAACTGGTTTGAATCTACTTTTCCAGCTGATGGGGGATAAAAGGTGAGAGAAGCAGGATTGAAGCTGCTTCTTTGAATTTACAATTCAACATGAAAATCATCTCGGGACTGGTAAAAAGAGGCCTTGACCTCTGTTTTTAGATGTACAGTCTAATGCCCTACTCAGTCATTTTACCGTTTTTTCTCACTTCATTTATGTTCGCTGACA
i ponAbe2.chr1                 C 0 C 0

a score=61741.000000
s hg38.chr14_GL000009v2_random       756 81 +    201709 GTTGACTATTCTCAACCAACCATAAAGATATCGAGACATTATATTTATTATTTGGCTCATGAGCAGGGATAGTCAGTACAG
s panTro5.chr9                  41642433 81 + 116767853 GTTGACTACTCTCAACCAACCATAAAGATATCGGGACATTATATTTATTATTTGGCACATGAGCAGGGATAGTCAGAACAG
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1           60769 81 -    116138 GTTGACTATTCTCAACCAACCATAAAGATATCGGGACATTATATTTATTATTTGGCACATGAGCAGGGGTAGTCAGTACAG
i gorGor5.CYUI01000530v1       C 0 C 0
s ponAbe2.chr1                 105601071 81 + 229942017 GTTGACTATTCTCAACCAACCATAAAGGTATCGGGACATTATATTTATTATTTGGTGCATGAGCAGAGATAGTCGGTATAG
i ponAbe2.chr1                 C 0 C 0
s rhiBie1.NW_016814808v1           64278 81 -    196653 GTTGACTATTTTCAACTAATCATAAAGATATCGGAACCTTATATCTACTATTCGGCACATGAGCTGGAATCATAGGCACAG
i rhiBie1.NW_016814808v1       N 0 N 0

a score=213230.000000
s hg38.chr14_GL000009v2_random       837 423 +    201709 CTTTAAG---CCTTATTCGAGCTGA----------------ACTCTACTAGATGATCAAATTT---ATGTCATTGTTATAGCCTATGCATTTGTCATAATTTTCTTTATGGTAATACTATAATTGGAGGTCTTGGCAACTGATTAGTCCCCC-GATAATTGGCGCCCCCGATATAGCATTTCTCTGCATAAATAATATGAGCTTCTGACTCCTCCCACCCTCCTTCCTTTTATTACTTGCATCCACTATAGTAGAAGCCGGCACTGGAACCGGCTGAACAGTCTCTCCTCCCTTAGCAGTAAACCTAACACATGCAGGCGCCTCTGTAGATTTCACTATCTTTTCACTCCACTTGACAGGTGTTTCTTCTACTTCAGGGGCTATTAACTTTATTACCACAATTGTTAATATAAAACCCCCAGCCATGTCCCAATATCACACACCCC
s panTro5.chr9                  41642514 422 + 116767853 CTTTAAG---CCTTATTCGAGCTGA----------------ATTCTACTAGATGATCAAATTT-----GTCATTGTTATAGCCTATGCATTTGTCATAATTTTCTTTATAGTAATACTATAATTGGAGGTCTTGGCAACTGATTAGTCCCCCTGATAATTGGCGCCCCCGATATAGAATTTCTCTGCATAAATAATATGAGCTTCTGACTCCTCCCACCCTCCTTCCTATTATAACTTGCATCCACTATAGTAGAAGCCAGCACTGGAACCGGCTGAACAGTCTCTCCTCCCTTAGCAGGAAACCTAACACCTGCAGGCGCCTCTGTAGATTTCACTATCTTTTCACTCCACTTGGCAGGTGTTTCTTCTACTTCAGGGGCTATTAACTTTATTACCACAATTGTTAATATAAAACCCCCAGCCATGTCCCAATATCACACACCCC
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1           60850 421 -    116138 CTTTAAG---CCTTATTCGAGCTGA----------------ACTCTACTAGATGATCAAATTT---ATGTCATTGTTATAGCCTATGCATATGTCATAATTTTCTTTATAGTAATACTATAATTGGAGGTCTTGGCAACTGATTAGTCCCCCTGATAATTGGCG-CCCCGATACAGCATTTCTCTGCATAAATAATATGAACTTCTGACTCCTCCCACCCTCCTTCCTATTATTACTTGCATCCACTATAGTAGAAGCCGGCACTGGAACCGGCTGAACAGTCTCTCCTCCCTTAGCAGGAAACCTAACACATGCAGATGCCTCTGTAGATTTCACTATC--TTCACTCCACGTGGCAGGTGTTTCTTCTACTTCAGGGGCTATTAACTTTATTACCACAATTGTTAATATAAAACCCCCAGCCATGTCCCAATATCACACACCCC
i gorGor5.CYUI01000530v1       C 0 C 0
s ponAbe2.chr1                 105601152 446 + 229942017 CTTTAAGTCTCCTTATTCGAGCTGAACTGGGTCACCCGGGTACTCTACTAGATGATCAAATTTATAATGTCGTTGTTACAGCCTATGCATTTGTCATAATTTTCTTTATAGTAATACTATAATTGGAGGTCTTGGCAACTGATCAGTCCCTCTGGTAGTTGGCGCCCCCGATACAGCATTTCTCCGCATAAATAATATGAGATTCTGAGTCCTCCCACCTTCCTTCCTATTATTACTTGCGTCCGATATAGTAGAAGCTGACGCTGGAACCGGCTGAACAGTCTCTCCTCCCTTAGCAGGAAACCTAACACATGCAGGCGCCTCTGTAGATTTCACTATCTTTTCACTCCACTTGGCAGGTGTTTCTTCTATTTTAGGGGCTATTAACTTTATTACCACAATTATTAATATAAAACCCCCAGCCATGTCCCAATATCACACACCCC
i ponAbe2.chr1                 C 0 N 0

a score=138629.000000
s hg38.chr14_GL000009v2_random     1260 539 +    201709  
s panTro5.chr9                 41642936 537 + 116767853  
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1          61271 536 -    116138  
i gorGor5.CYUI01000530v1       C 0 C 0

a score=19251.000000
s hg38.chr14_GL000009v2_random     1799 41 +    201709 GGCTTATATTATGGTTCATTCATATATTTAGAAACCTGAAA
s panTro5.chr9                 41643473 41 + 116767853 GGCTTATATTATGGTTCATTCATATATTTAGAAACCTGAAA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1          61807 41 -    116138 GGCTTATATTATGGTTCATTCATATATTTAGAAACCTGAAA
i gorGor5.CYUI01000530v1       C 0 C 0
s rhiRox1.KN295595v1              35159 41 -     49454 GGCCTATATTACGGCTCATTCCTTCTTCTAGAAACCTGAAA
i rhiRox1.KN295595v1           N 0 I 2469

a score=5579.000000
s hg38.chr14_GL000009v2_random     1840 21 +    201709 GTTTCTAAATAAGTTGTAAAA
s panTro5.chr9                 41643514 21 + 116767853 GTTTCTAAATAAATTGTAAAA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1          61848 21 -    116138 GTTTCTAAATAAGTTGTAAAA
i gorGor5.CYUI01000530v1       C 0 C 0
e rhiRox1.KN295595v1              35200 2469 -     49454 I

a score=99403.000000
s hg38.chr14_GL000009v2_random     1861 212 +    201709 AAGTTGTAAAAAAA-CCCCAGCTGAAAT------AACTACGAAGGTGCCTTT-AATATTCTGAAGACAAAATAGCTAAGATCCAAACTGGGAGTAGATACCCCGCTATGCTTAACTCTAAACTCGAATAGTTAGATCAACAAAACTGTTCGCCAGAACACTACAAGCAACAGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATATCCCTCTAAAGGAGG
s panTro5.chr9                 41643535 213 + 116767853 AAGTTGTAAAAAAAACCCCAGCTGAAGT------AACTACGAAAGTGCCTTT-AATATTCTGAAGACAAAATAGCTAAGATCCAAACTGGGAGTAGATACCCCGCTATGCTTAACCCTAAACTCGAATAGTTAGATCAACAAAACTGTTCGCCAGAACACTACAAGCAACAGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATATCCCTCTAAAGGAGC
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1          61869 213 -    116138 AAGTTCTAAAAAAAACCCCAGCTGAAAT------AACTACGAAGGTGCCTTT-AATATTCTGAAGACAAAATAGCTAAGATCCAGACTGGGAGTAGATACCCTGCTATGCTTAACCCTAAACTCGAATAGTTAGATCAACAAAACTGTTCGCCAGAACACTACAAGCAACAGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATATCCCTCTAAAGGAGC
i gorGor5.CYUI01000530v1       C 0 C 0
s rhiRox1.KN295595v1              37669 217 -     49454 AAATTGTAAAAA---CCCTAGCTGATGTAAAATAAACTACGAAAGTGTCTTTAAACTTTCTGAACACACAATAGCTAAGACTCAAACTGGGATTAGATACCCCACTATGCTTACCCTTAAACTTCAATAGTTAAAACAACAAAACTACTCGCCAGAATACTACAAGCAACAGCTTAAAACTCAAAGGACTTGGCGGTGCTTCACATCCCTCCAGAGGAGC
i rhiRox1.KN295595v1           I 2469 C 0

a score=242101.000000
s hg38.chr14_GL000009v2_random     2073 314 +    201709 CTGTTCTATAATCGATAAACCCCAATTTACCTCACCACCTCTTGCCCAGCCTAAATACCTCCATCTTCAGCAAACCCTGG-AAAGGCCGCAGAGTAAGCACAAGTATCTACATAAAAACTTTAGTTCAAGGTGTAGCCCATGAGGTGGCAAGAAATAGG-AACGTTTTCTACATCCAGAAAAATGTCGCGACAACCGTTATGAAATCTAAGGGCTCAAGGAGGATTTAGCAATAAATTGAGAGCAGAGTGTTTAATTGAATAAGGCCATGAAGCATGCACACACCGCCCGTCACCCTCCTCAAATACATTCTAGAA
s panTro5.chr9                 41643748 314 + 116767853 CTGTTCTATAATCGATAAACCCCAATTTACCTCACCACCTCTTGCCCAGCCTATATACCTCCATCTTCAGCAAACCCTGG-AAAGGCCACAGAGTAAGCACAAGTATCTACATAAAAACATTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATAGG-TACGTTTTCTACATCCAGAAAAATCTCGCGACAACCGTTATGAAATCTAAGGGCTCAAGGAGGATTTAGCAATAAATTGAGAGCAGTGTGTTTAATTGAATAAGGCCATGAAGCACGCACACACCGCCCTTCACCCTCCTCAAATATATTCTAGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                95921901 314 - 114479721 CTGTTCTATAATCGATAAACCCCAATTTACCTCACCACCTCTTGCCCAGCCTATATACCTCCATCTTCAGCAAACCCTGG-AAAGGCCACAGAGTAAGCACAAGTATCTACATAAAAACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATAGG-TACGTTTTCTACATCCAGAAAAATCTCGCGACAACCGTTATGAAATCTAAGGGCTCAAGGAGGATTTAGCAATAAATTGAGAGCAGTGTGTTTAATTGAATAAGGCCATGAAGCACGCACACACCGCCCTTCACCCTCCTCAAATATATTCTAGAA
i panPan2.chr13                N 0 C 0
s gorGor5.CYUI01000530v1          62082 313 -    116138 CTGTTCTATAATCGATAAACCCCAATTTACCTCACCACCTCTTGCTCAGCCTAAATACCTCCATCTTCAGCAAACCCTGG-AAAGGCCACAGAGTAAGCACAAGTATCTACATAAAAAGGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGA-AACATTTTCTACATCCAGAAAAATCTCGCGGCAACCGTTATGAAATCTAAGGGCTCAAGGAGGATTTAGCAATAAATTGAGAGCAGAATGTTTAATTGAATAAGGCCATGAAGCACGCACACACTGCCC-TCAGCCTCCTCAAATATATTCTAGAA
i gorGor5.CYUI01000530v1       C 0 C 0
s rhiRox1.KN295595v1              37886 314 -     49454 TTATTCTATAATCAATAAACCTTGATCCACCTCACCATCTCTTGCTCAGACTATATACCGCCATCCTCACCAAACCCTAATAAAGGCCACAAAGTAAGCATAAATGCCCCTGCAAAAACGTTAGGTCAAGGTGTAGCTTATGAGATGGTAAAAAATGGGCTACATTTTCTAC--CCCAGATAATCCCACAATAACTCTTATGAAACCTAAGAGCTCAAGGAGTATTTAGCAGTAAATTAAGAATAGAGTGCTTAATTGAATAAGGCCATAAAGCATGCACACACCGCCGGTCACTCTCCTCAAGTATACTTAAGGA
i rhiRox1.KN295595v1           C 0 N 0

a score=411214.000000
s hg38.chr14_GL000009v2_random     2387 778 +    201709  
s panTro5.chr9                 41644062 785 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                95922215 785 - 114479721  
i panPan2.chr13                C 0 I 20647
s gorGor5.CYUI01000530v1          62395 780 -    116138  
i gorGor5.CYUI01000530v1       C 0 C 0

a score=326861.000000
s hg38.chr14_GL000009v2_random     3165 1375 +    201709  
s panTro5.chr9                 41644847 1298 + 116767853  
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1          63175 1380 -    116138  
i gorGor5.CYUI01000530v1       C 0 C 0
e panPan2.chr13                95923000 20647 - 114479721 I

a score=450412.000000
s hg38.chr14_GL000009v2_random     4540 882 +    201709  
s panTro5.chr9                 41646145 882 + 116767853  
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1          64555 882 -    116138  
i gorGor5.CYUI01000530v1       C 0 C 0
s ponAbe2.chr1_random          31336373 875 +  35968885  
i ponAbe2.chr1_random          N 0 C 0
e panPan2.chr13                95923000 20647 - 114479721 I

a score=947022.000000
s hg38.chr14_GL000009v2_random     5422 1121 +    201709  
s panTro5.chr9                 41647027 1162 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                95943647 1132 - 114479721  
i panPan2.chr13                I 20647 I 81557
s gorGor5.CYUI01000530v1          65437 1135 -    116138  
i gorGor5.CYUI01000530v1       C 0 C 0
s ponAbe2.chr1_random          31337248 1129 +  35968885  
i ponAbe2.chr1_random          C 0 C 0

a score=617811.000000
s hg38.chr14_GL000009v2_random     6543 1208 +    201709  
s panTro5.chr9                 41648189 1210 + 116767853  
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1          66572 1210 -    116138  
i gorGor5.CYUI01000530v1       C 0 C 0
s ponAbe2.chr1_random          31338377 1220 +  35968885  
i ponAbe2.chr1_random          C 0 I 101
e panPan2.chr13                95944779 81557 - 114479721 I

a score=83940.000000
s hg38.chr14_GL000009v2_random     7751 164 +    201709 TTTGCATCTTCTGTCTGCTTAAAATGTTTAATTTGTTATACCCAAATAATTTGGCTATAATTGATAATTTAATTTATCAAATTAAATTGT-TTTTTTTCCCTTTAGACTTTCTTCAGTCACATCTGAATAAATCACTTAGAAGTAAGCTAGATGTAATATAATGA
s panTro5.chr9                 41649399 164 + 116767853 TTTGCATCTTCTGTCAGCTTAAAATGTTTAATTTGTTATAGCCAAATAATTTGGCTATAATTGATAATTTAATTTATCAAATTAAATTGC-TTTTTTTCCCTTTAGACTTTCTTCAGTCACATCTGAATAAATCACTTAGAAGTAAGCTAGATGTAATATAATGA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1          67782 165 -    116138 TTTGCATCTTCTGTCAGCTTAAAATGTTTAATTTGTTATAGCCAAATAATTTCGCTATAATTGATAATTTAATTTATCAAATTAAATTGCTTTTTTTTCCCTTTAGACTTTCTTCAGTCACATCTGAATAAATCACTTAGAAGTAAGCTAGATGTAATATAATGA
i gorGor5.CYUI01000530v1       C 0 C 0
s ponAbe2.chr1_random          31339698 161 +  35968885 TTTGTATCTTCTGTCAACTTAAAATGTTTAATTTGTTATAGGCAAATAATTTGGCTGTAATTGATAATTTAATTTATCAAATTAAATTGC-TTTTTTTCCCTTTAGACT---TTCAGTCACATCTGAATAAATCACTTAGAAGTAAGCTAGATGTAATATAATGA
i ponAbe2.chr1_random          I 101 M 840
e panPan2.chr13                95944779 81557 - 114479721 I

a score=32417.000000
s hg38.chr14_GL000009v2_random     7915 122 +    201709 AATGCTTAAAAGGGCTGTGTATCTTCATATTACACTTACAGTGACTTTCTGCTGTACCCATTATATTCTACCTGCAGCTAGTTGAGGTAAAGAGAGGGCATTTAACTGTCAAGGGGACCTGT
s panTro5.chr9                 41649563 122 + 116767853 AATGTTTAAAAGGGCTGTGTATCTACATATTACACTTACAGTGATTTTCTGTTGTACCCATTATATTCTACCTGCAGCTAGTTGAGGTAAAGAGAGGGCATTTAACTGTCAAGGGAACCTGT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1          67947 122 -    116138 AATGGTTAAAAGGGCTGTGTATCTTCATATTACACTTACAGTGATTTTCTGTTGTACCCATTATATTCTACCTGCAGCTAGTTGAGGTAAAGAGAGGGCATTTAACTGTCAAGGGAACCTGA
i gorGor5.CYUI01000530v1       C 0 C 0
e panPan2.chr13                95944779 81557 - 114479721 I
e ponAbe2.chr1_random          31339859 840 +  35968885 M

a score=-1149.000000
s hg38.chr14_GL000009v2_random     8037 2 +    201709 -TA
s panTro5.chr9                 41649685 2 + 116767853 -GA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1          68069 2 -    116138 -GA
i gorGor5.CYUI01000530v1       C 0 C 0
s tarSyr2.KE940243v1              14234 2 +    445202 CG-
i tarSyr2.KE940243v1           N 0 N 0
e panPan2.chr13                95944779 81557 - 114479721 I
e ponAbe2.chr1_random          31339859 840 +  35968885 M

a score=110554.000000
s hg38.chr14_GL000009v2_random     8039 400 +    201709 GGAGACTGTAGAAATCTGGAAAGTCTCTTGGGTCTTTGAGGGATTTTGGGATGCAGAGAGTGGGGCTGGGATCTCTGGCTAGGTTGGAGCCAGCCTGCATTTGTATCTTTATCTTGGAAGCAAACTTAGAATGCAGAGATAGATGTGGCCTGGATGCTGCTAACTCTAGCCAACCACTAAATCTTAAGGTGGGAGAGATGCAGGCTTTGGCTGGGTGCTAAGCTGCTGTAGCTGGTTGAATGTAGAGGTCACTATCTTTTCTGAATACTTGTAAGTAAATTAAATCATTCTCTACTCCTGTATGCCTGCCAACCAAATGGGAAATCGCTATAGAAAAGATGGCTTAAATTTTAGTCTTTGAAGTGGTTAATGCACGTTTCTGGAATCAAGATTTAATGTG
s panTro5.chr9                 41649687 400 + 116767853 GGAGACTGTAGAAATCTGGAAAGTCTCTTGGGTCTTTGAGGGATTTTGGGATGCAGAGAGTGGGGCTGGGATCTCTGGCTAGGTTGGAGCCAGCCTGCATTTGTATCTTTATCTTGGAAGCAAACATAGAATGCAGAGATAGATGTGGCCTGGATGCTGCTAACTCTAGCCAACCACTAAATCTTAAGGTGGGAGAGATGCAGGCTTTGGCTGGGTGCTAAGCTGTTGTAGCTGGTTGAATGTAGAGGTCACTATCTTTTCTGAATACTTGTAAGTAAATTAAATCATTCTCTACTCCTGTATGCCTGCCAACCAAATGGGAAATCGCTATAGCAAAGATGGTTTAAATTTTAGTCTTTGAAGTGGTTTACGCACGTTTCTGGAATCAAGATTTAACGCA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1          68071 400 -    116138 GGAGACTGTAGAAATCTGGAAAGTCTCTTGGGTCTTTGAGGGATTTTGGGATGCAGAGAGTGGGGCTGGGATCTCTGGCTAGGTTGGAGCCAGCCTGCATTTGTATCTTTATCTTGGAAGCAAACTTAGAATGCAGAGATAGATGTGGCCTGGATGCTGTTAACTCTAGCCAACCACTAAATCTTAAGGTGGGAGAGATGCAGGCTTTGGCTGGGTGCTAAGCTGCTGTAGCTGGTTGAATGTAGAGGTCACTATCTTTTCTGAATACTTGTAAGTAAATTAAGTCATTCTCTACTCCTGTATGCCTGCCAACCAAATGGGAAATCGCTATAGAAAAGATGGTTTAAATTTTAGTCTTTGAAGTGGTTTATGCACGTTTCTGGAATCAAGATTTAACGTG
i gorGor5.CYUI01000530v1       C 0 C 0
e panPan2.chr13                95944779 81557 - 114479721 I
e ponAbe2.chr1_random          31339859 840 +  35968885 M

a score=116656.000000
s hg38.chr14_GL000009v2_random     8439 220 +    201709 GACTTGGATTGGATATTGAATATTTTTGATTTGTCTACTTTTCTCTCCATAGGGAGCTTATAGCTTCATTGCACTGTGTGTGACATTTGGGTCCTGTTTGGCAGCAATGACTGCCTTTCTGTTTAGTGTCTGTGTGCTATGAAGATTGCACACAGGGGTCCAGATGCATCCTGTTTTGAGAATGTTAATGGATACACCAGCTGCTGCTTTGGATTTCACC
s panTro5.chr9                 41650087 220 + 116767853 GACTTGGATTGGGTATTGAATATTTTTGATTTGTCTACTTTTCTCTCCATAGGGAGTTTATAGCTTCATTGCACTGTGTGTGGCATTTGGGTCCTGTTTGGCAGCAATGACTGCCTTTCTGTTTAGTGTCTGTGTGCTATGAAGATTGCACACAGGGGTCCAGATGCATCCTGTTTTGAGAATGTTAATGGATACACCAGCTGCTGCTTTGGATTTCACC
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000530v1          68471 220 -    116138 GACTTGGATTGGATATTGAATATTTTTGATTTGTCTACTTTTCTCTCCATAGGGAGCTTATAGCTTCATTGCACTGTGTGTGGCATTTGGGTCCTGTTTGGCAGCAATGACTGCCTTTCTGTTTAGTGTCTGTGTGCTATGAAGATTGTACACAGGGGTCCAGATGCATCCTGTTTTGAGAATGTCAATGGATACACCAGCTGCTGCTTTGGATTTCACC
i gorGor5.CYUI01000530v1       C 0 C 0
s ponAbe2.chr1_random          31340705 218 +  35968885 GACTTGGACTGGATATTGAATATTTTTGATTTGTCTAC-TTTCTCTCCATAGGGAGC-TATAGCTTCATTGCACCATGTGTGGCATTTGGGTCCTGTTTGGCAGCAATGACTGCCTTTCTGTTTAGTGTCTGTGTGCTATGAAGATTGCACACAGGGGTCCAGATGCAGTCTGTTTTGAGAATGTCAAGGGATACACCAGCTGCTGATTTGGATTTCACC
i ponAbe2.chr1_random          M 840 N 0
e panPan2.chr13                95944779 81557 - 114479721 I

a score=1719.000000
s hg38.chr14_GL000009v2_random     8659 6 +    201709 CATTGG
s panTro5.chr9                 41650307 6 + 116767853 CATTGG
i panTro5.chr9                 C 0 I 32516
s gorGor5.CYUI01000530v1          68691 6 -    116138 CATTGG
i gorGor5.CYUI01000530v1       C 0 C 0
e panPan2.chr13                95944779 81557 - 114479721 I

a score=807.000000
s hg38.chr14_GL000009v2_random     8665 2 +    201709 CG
s panTro5.chr9                 41682829 2 + 116767853 cg
i panTro5.chr9                 I 32516 C 0
s panPan2.chr13                96026336 2 - 114479721 cg
i panPan2.chr13                I 81557 C 0
s gorGor5.CYUI01000530v1          68697 2 -    116138 TG
i gorGor5.CYUI01000530v1       C 0 C 0

a score=12606.000000
s hg38.chr14_GL000009v2_random      8667 2 +    201709 gt
s panTro5.chr9                  41682831 2 + 116767853 gt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96026338 2 - 114479721 gt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1           68699 2 -    116138 GT
i gorGor5.CYUI01000530v1       C 0 I 35234
s nomLeu3.chr1a                 40789214 2 + 122973662 gt
i nomLeu3.chr1a                N 0 C 0
s macFas5.chr13                111068480 2 - 111193037 gt
i macFas5.chr13                N 0 C 0
s macNem1.NW_012012823v1          338907 2 +    434444 gt
i macNem1.NW_012012823v1       N 0 C 0
s cerAty1.NW_012002921v1          385867 2 -    438202 gt
i cerAty1.NW_012002921v1       N 0 C 0
s chlSab2.chr2                  66435622 2 +  90373283 gt
i chlSab2.chr2                 N 0 C 0
s manLeu1.NW_012105442v1         1484159 2 -   1547936 gt
i manLeu1.NW_012105442v1       N 0 C 0
s saiBol1.JH378105              64621528 2 -  72162052 gt
i saiBol1.JH378105             N 0 C 0
s cebCap1.NW_016107851v1         1037753 2 +   1314817 gt
i cebCap1.NW_016107851v1       N 0 C 0

a score=45313.000000
s hg38.chr14_GL000009v2_random      8669 10 +    201709 ttctataaaa
s panTro5.chr9                  41682833 10 + 116767853 ttttataaac
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96026340 10 - 114479721 ttttataaac
i panPan2.chr13                C 0 C 0
s nomLeu3.chr1a                 40789216 10 + 122973662 ttctataaac
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111068482 10 - 111193037 ttctataaac
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          338909 10 +    434444 ttctataaac
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          385869 10 -    438202 ttctataaac
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66435624 10 +  90373283 ttctataaac
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1484161 10 -   1547936 ttctataaac
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64621530 10 -  72162052 ttctataaac
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1037755 10 +   1314817 ttctacaaac
i cebCap1.NW_016107851v1       C 0 C 0
e gorGor5.CYUI01000530v1           68701 35234 -    116138 I

a score=1515106.000000
s hg38.chr14_GL000009v2_random      8679 300 +    201709 actttagacacagtgagccactcttctcacggaatggtggaaaccctcccaattccaatttcctaaacaccagccaagggccagccttgca---tgcaggcctttctaaggatggcagtctcttgcctgttatatgaaatcttttctgcacaCTTTGTATAAC----------CCCAACTTAATTTTTGGTGTTGTTTTAAAATTTCATTTTAATAACA--TAATATT--ATAAGATAAGGTAACTTGGTACTAATTTCTGTTGTATGATCCATCTTAAGTTGCAGCGCTGGTTACTTTTTTGACTTTCAGTGACGA
s panTro5.chr9                  41682843 300 + 116767853 actttagacacagtgagccactcttctcagggaatggtggaaaccctcccaattccaatttcctaaacagcagccaagggccagcctttca---tgcaagcctttctaaggatggcagtctcttgcctgttacatgaaatcttttctgcacaCTTTGTATAGC----------CCCAGCTTAATTTTTGGTGTTGTTTTAACATTTCATTTTAATAACA--TAATATT--ATAAGATAAGGTAACTTGGTACTAATTTCTGTTGTATGATCCATCTTAAGTTGCAGTGCTGGTTACTTTTTTGACTTTTGGTGATGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96026350 300 - 114479721 actttagacacagtgagccactcttctcagggaatggtggaaaccctcccaattccaatttcctaaacagcagccaagggccagcctttca---tgcaagcctttctaaggatggcagtctcttgcctgttacatgaaatcttttctgcacaCTTTGTATAGC----------CCCAGCTTAATTTTTGGTGTTGTTTTAACATTTCATTTTAATAACA--TAATATT--ATAAGATAAGGTAACTTGGTACTAATTTCTGTTGTATGATCCATCTTAAGTTGCAGTGCTGGTTACTTTTTTGACTTTTGGTGATGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          103935 299 -    116138 actttagatacagtgagccaatcttctcagggaatggtggaaaccctcccaattccaatttcctaaacaccagccaagggccagccttgca---tgcaggcctttctaaggatggcagtctcttgcctg-tatatgaaatcttttctgcacaCTTTGTATAGC----------CCCAACTTAATTTTTGGTGTTGTTTTAAAATTTTATTTTAATAACA--TAATATT--ATAAGATAAGGTAACTTGGTACTAATTTCTGTTGTATGATCCATCTTAAGTTGCAGTGCTGGTTACTTTTTTGACTTTTGGTGACGA
i gorGor5.CYUI01000530v1       I 35234 C 0
s nomLeu3.chr1a                 40789226 295 + 122973662 actttagacacggtgagccactcttctcagggaatggtggaaaccctcccaattccaagttcctaaacaccagccaagggccagccttgca---tgcaggcctttctaaggatggcagtctcttgcctgctatatgaaatcttttctgcacaCTTTGTATAGC----------CCCACCTTAATTTTTGGTGTTGTTTCAAAATTTCATTTTAATAACA--TAATATT-------ATAAGGTAACATGGTACTAATTTCTGTTGTATGATCCATCTTCAGTTGCAATGCTGGTTACTTTTTTGACTTTTGGTGACGA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111068492 302 - 111193037 actttagacacagtgagccactctccttagggaatggtggaaactctcccaattccaatttcctaaacaccagtcaagggccagccttgtg---tgcaggcctttctaaagatggcagtctcttgcctgctctatgaaatctttattgcacaACACTTATAGC----------CCCAACATAACTTTTGGTGTTGTTTTACATTTTCATTTTAATAACACATAATATT--ATAAGATAAGGTAAATTGGTAGTAATTTCTTTTGTATGATCCATCTTAAGTTGCAATGCTGGTTACTTTTTTGACTTTTGGTGACAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          338919 300 +    434444 actttaaacacagtgagccactcttctcagggaatggtggaaaccctcccaattccaatttcctaaacaccagccaagggccagccttgcatgctgcatgcctttctaaggatggcagtctcttgcctgctatatgaaatcttttctgcacaACACTTATAAC----------CCCAACTTAAACTTTGGTGTTGTTTTAAAATTTCATTTTAGTAACACTCAATATT-------ATAAGGTAACTTGGTACTAGTTTCTGTTGTATGATCCATCTGAAGTTGTAAAGCCAGTTGCTTTTTTGACTTTTGGTGACTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          385879 297 -    438202 actttaaacacagtgagccactcttctcagggaatggtggaaaccctcccaattccaatttcctaaacaccagccaagggccagccttgca---tgcaggcctttctaaggatggcagtctcttgcctgctatatgaaatcttttctgcacaACACTTATAAC----------CCCAACTTAAACTTTGGTGTTGTTTTAAAATTTCATTTTAGTAACACTCAATATT-------ATAAGGTAACTTGGTACTAGTTTCTGTTGTATGATCCATCTGAAGTTGTAAAGCTAGTTGCTCTTTTGACTTTTGGTGACTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66435634 298 +  90373283 acttgaaacacagtgagccactcttctcagggaatggtggaaaccctcccaattccaatttcctaaacaccagccaagggccacccttgcc---tgcaggcctttctaaggatggcagtctcttgcctgctatatgaaatcttttctgcacaACACTTCTAAC----------CCCAACTTAAACTTTGGTGTTGTTTTAAAATTTCATTTTAGTAACACTCAATATT--ATGAGATAAGGTAACTTGGTACTAGTTTCTGTTGTATGATCCATCTGAAGTTGTAAAGCTAGTTGCTTTTTTGACTTTTGGTG----
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1484171 307 -   1547936 actttaaacacagtgagccagtcttctcagggaatggtggaaaccctcccaattccaatttcctaaacaccagccacgggccagccttgca---tgcaggcctttctaaggatggcagtctcttgcctgctatatgaaatcttttctgcacaACACTTATGCCCACTTTTCTGCCCAACTTAAACTTTGGTGTTGTTTTAAAATTTCATTTTAGTAACACTCAATATT-------ATAAGGTAACTTGGTACTAGTTTCTGTTGTATGATCCATCTGAAGTTGTAAAGCTAGTTGCTTTTTTGACTTTTGGTGACAA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64621540 302 -  72162052 actttagacatggagagccacccttctcagggaacggtggaaaccctcccaattctaatttcctcaacaccagccaagggtcagcgttgta---tgcagacctttctaaggttggcagtctcttgcctgctatgtgaaatcttttctgcacaAGACTTATGGC----------CCCAACTTAATTTTTGGTACTCttttaaaatttcattttaataaca--taatattttataaGACAAGGTAACTTGGTACTAGTTCCTGTTGTTTGATCCGTCTTAAGTTGCAATGCTGGTTGCCTTTTTGACTTTTGGTGACTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1037765 302 +   1314817 actttagacatggtgagccacccttctcagggaatggtgaaaaccctcccaattctaatttcctcaacaccaggcaagggccagccttgta---tgcagaactttctaaggttggcagtctcttgcctgctacatgaaatcttttctgcacaAGACTTATGGC----------CCCAACTTAATTTTTGATATTGTTTTAAAATTTCATTTTAATAACG--TAATATTTTATAAGACAAGGTAACTTGGTACTGGTTCCTGTTGTTTGATCCATCTTAAGTTGCAATGCTGGTTGCCTTTTTGACTTTTGGTGACTG
i cebCap1.NW_016107851v1       C 0 C 0

a score=149903.000000
s hg38.chr14_GL000009v2_random      8979 33 +    201709 AC------------------------------------------------------------AGCTATTTGTACATAAGTTACCATAGCAAT-T
s panTro5.chr9                  41683143 34 + 116767853 AC------------------------------------------------------------AGCTATTTATACATAAGTTACCATAGCAATGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96026650 34 - 114479721 AC------------------------------------------------------------AGCTATTTATACATAAGTTACAATAGCAATGT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          104234 34 -    116138 AC------------------------------------------------------------AGCTATTTGTACATAAGTTACCATAGCAATGT
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40789521 34 + 122973662 AC------------------------------------------------------------AGCTATTTGCATGTAAGTTACCATAGCAATGT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111068794 34 - 111193037 AC------------------------------------------------------------AGGTATTTGTATATAAGTTACCATAACAGTGT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          339219 34 +    434444 AC------------------------------------------------------------AGGTATTTGCATGTAAGTTACCATAGCAATGT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          386176 34 -    438202 AC------------------------------------------------------------AGGTATTTGCATGTAAGTTACCATAGCAGTGT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66435932 34 +  90373283 AC------------------------------------------------------------AGGTATTTGTATGTAAGTTACCATAGCAATGT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1484478 34 -   1547936 AC------------------------------------------------------------AGGTATTTGTATATAAGTTACCATAGCAGTGT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64621842 94 -  72162052 AGGGTTATTGGTATGTAAGTTACCACAACAATAACCGTTAGTCAACACTTTTGGTGACTAAGGGTTATTGGTATGTAAGTTACCACAGCAATAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1038067 34 +   1314817 AC------------------------------------------------------------GGATACTGGTATGTAAGTTATCACAGCAATAT
i cebCap1.NW_016107851v1       C 0 C 0
s dasNov3.JH570393               1694101 34 -   2296528 AT------------------------------------------------------------AGGTATTTGAACGTAAGTTAATGTGACAATAT
i dasNov3.JH570393             N 0 C 0

a score=8281.000000
s hg38.chr14_GL000009v2_random      9012 1 +    201709 T
s panTro5.chr9                  41683177 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96026684 1 - 114479721 T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          104268 1 -    116138 T
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40789555 1 + 122973662 T
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111068828 1 - 111193037 T
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          339253 1 +    434444 T
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          386210 1 -    438202 T
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66435966 1 +  90373283 T
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1484512 1 -   1547936 T
i manLeu1.NW_012105442v1       C 0 C 0
s rhiBie1.NW_016824252v1           43985 1 -     97784 T
i rhiBie1.NW_016824252v1       N 0 N 0
s saiBol1.JH378105              64621936 1 -  72162052 T
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1038101 1 +   1314817 T
i cebCap1.NW_016107851v1       C 0 C 0
s dasNov3.JH570393               1694135 1 -   2296528 T
i dasNov3.JH570393             C 0 C 0

a score=1689262.000000
s hg38.chr14_GL000009v2_random      9013 320 +    201709 AGGTAATTATAATCTGTCCTATTTATCTCATTTACCTTTCAGTAAAATT-----GTTAAAT-----AAGCAAAATAATTTCTGAGTT-AAAATTAGAATAAAAATTGTCTTTTATTTGGATTACATGAATAATCTAGTT----TTCATATTGTGCTAAAGCCCTGCTTAGAATTATGAAATAAGATAAAATATTCAATCATTTTTATCAATATTTTCT----TACCTAAGCATGCAATTAAATTTATTTATTTTATATACTTCA---------ATTTGAGAAATAATGACCACATGTTGTTACTTTGGTCTTCAATGATCTCTAATTTTTAGGGTCGCCATGTCTTGC
s panTro5.chr9                  41683178 334 + 116767853 AGGTAATTATTATCTGTCCTATTTATCTCATTTACCTTTCAGTAAAATT-----GTTAAATTAAATAAGCAAAATAATTTCTGAGTT-AAAATTAGAATAAAAATTGTCTTTTATTTGGATTACATGAATAATCTAGTT----TTCATATTGTGCTAAATCCCTGCTTAGAATTATGAAATAAGATAAAATGTTCAATCATTTTTATCAATATTTTCT----TACCTAAGCATGCAATTACATTTATTTATTTTATATATTTTATATACCTTGATTTGAGAAATAATGACCACATGTTGTTACTTTGGTCTTCAATAATCTCTAATTTTTAGGGTCACTGTGTCTTGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96026685 334 - 114479721 AGGTAATTATTATCTGTCCTATTTATCTCATTTACCTTTCAGTAAAATT-----GTTAAATTAAATAAGCAAAATAATTTCTGAGTT-AAAATTAGAATAAAAATTGTCTTTTATTTGGATTACATGAATAATCTAGTT----TTCATATTGTGCTAAATCCCTGCTTAGAATTATGAAATAAGATAAAATGTTCAATCATTTTTATCAATATTTTCT----TACCTAAGCATGCAATTACATTTATTTATTTTATATATTTTATATACCTTGATTTGAGAAATAATGACCACATGTTGTTACTTTGGTCTTCAATAATCTCTAATTTTTAGGGTCACTGTGTCTTGC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          104269 329 -    116138 AGGTAATTATAATCTGTCCTATTTATCTCATTTACCTTTCAGTAAAATT-----GTTAAAT-----AAGCAAAATAATTTCTGAGTT-AAAATTAGAATAAAAATTGTCTTTTATTTTGATTACATGAATAACCTAGTT----TTCATATTGTGCTAAATCCCTGCTTAGAATTATGAAATAAGATAAAATATTCAATCATTTTTATCAATATTTTCT----TACCTAAGCATGCAATTAAATTTATTTATTTTATATATTTTATATACTTCAATTTGAGAAATAATGACCACATGTTGTTACTTTGGTCTTCAATGATCTCTAATTTTTAGGGTCACCCTGACTTGC
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40789556 332 + 122973662 AGGTAATTATAATCTGTCCTATTTATCTCATTAACCTATCAGTAAAATT-----GTTAAATTAAATAAGTGTAATAATTTCTGAGTT-AAAATTAGAATAAAAAT--TCTCTTATTTTGATTACATGAATAATCTAGTT----TTCATATTGTGCTAAATCCCTGTTTAAAATTATGAAATAAGATAAAATATTCAATCATTTTTATCAATATTTTCT----TACCTAAGCATACAATTAAATTTATTTATTTTATATATTTTATATACTTCAATTTGAGAAATAATGACCACATGTTGTCACTTTGGTCTTCAATGATCTCTAATTTTTAGGGTCACTGTGTCTTGC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111068829 323 - 111193037 AGGTAATGATAATCTGTCCTTTTTATCTTATTAGCCTTTCAGTAAAATTGTGAAATTAAAT-----AAGCATAATAATTTCTGAGTT-AAAATTAGAAT-AAAATTGTCTTTTTTTTGGATGACATGGATAATCTAGTT----TTCATATTGTGCTAAATCCCTGTTTAGAAGTATGAAACGAGATAAAATATTCAATCATTTCAATCAATATCGTCT----TGCCTAAGCATGCAATTAACTTATTTTATA-----AATTTTATAT-----ACTTTGAGAAATAATGACCACGTGTTGTTATTTTGATCTTCAATGATCTCTAATTTTTAGGGTCACCAAGTCTTGC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          339254 319 +    434444 AGGTAATTATAATCTGTCCTTTTTAACTCATTAATCTTTCAGTAAAAT------GTTAAAT-----AAGC---ATAATTTCCGAGTT-AAAATTAGAATAAAAATGGTCTTTTATTTTGATTACATGAATAATCTAGTT----TTCATATTGTGCTAAATCCGTGTTTAGAATTATGAAATAAGATAAAATATTCAATCATTTT-ATCAATATTTTCT----TACCTATGCATGCAATTAAATTTATTTATT-----TATCATATATTCTTCAATTTGTGAAATAATGACCACATGCTGTTACTTTGGTCTTCAATGATCTCTAATTTTTAGGGTCACAGTGTCTTGC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          386211 319 -    438202 AGGTAATTATAATCTGTCCTTTTTAACGCATTAATCTTTCAGTAAAAT------GTTAAAT-----AAGC---ATAATTTCCGAGTT-AAAATTAGAATAAAAATGGTCTTTTATTTTGATTACATGAATAATCTAGTT----TTCATATTGTGCTAAATCCGTGTTTAGAATTATGAAATAAGATAAAATATTTAATCATTTT-ATCAATATTTTCT----TACCTATGCATGCAATTAAATTTATTTATT-----TATCATATATACTTCAATTTGTGAAATAATGACCACATGCTGTTACTTTGGTCTTCAATGATCTCTAATTTTTAGGGTCACCGTGTCTTGC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66435967 319 +  90373283 AGGTAATTATAATCTGTCCTTTTTAATTCATTAATCTTTCAGTAAAAT------GTTAAAT-----AAGC---ATAATTTCCTAGTT-AAAATTAGAATAAAAATAGTCTTTTATTTTGATTACATGAATAATCTAGTT----TTCATATTGTGCTAAATCCCTGTTTAGAATTATGAAATAAGATAAAATATTCAATCATTTT-ATCAATATTTTCT----TGCCTACGCATGCAATTAAATTTATTTATT-----TATCTCATATACTTCAAGTTGTGAAATAATGACCACATGCTGTTACTTTGGTCTTCAATGATCTCTAATTTTTAGGGTCACTAAGTCTTGC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1484513 319 -   1547936 AGGTAATTATAATCTGTCCTTTTTAACTCATTAATCTTTCAGTAAAAT------GTTAAAT-----AAGC---ATAATTTCCGAGTT-AAAATTAGAATAAAAATGGTCTTTTATTTTGATTACGTGAATAATCTAGTT----TTTATATTGTGCTAAATCCGTGTTTAGAATTATGAAATGAGATAAAATATTTAATCATTTT-ATCAATATTTTCT----TACCTATGCATGCAATTAAATTTATTTATT-----TATCACATATACTTCAATTTGTGAAATAATGACCACATGCTGTTACTTTGGTCTTCAATGATCTCTAATTTTTAGGGTCACCGTGTCTTGC
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64621937 312 -  72162052 AGGTAATTATAATCCGTCCTCCTTATCTCATTAACCTTTCCTTAAAATT-----GTTAAATTAAATGAGCATAATAATTTCTGAGTT-AAAATTAGAATAAAAAATATCTTTTATTTTGATTACATGAATAATCCAGTT----TTCATATTGTGCTAAATCC--ATTTAGAATTATTAAATAAGATAA--------------------AATATTTTCT----TGCCTAAGCATGCAATTAAATTTCTTTATTTCATATACTTTTTATACTTCAATTTGAGAAATAATGCCCACATGCTGTTACTTTGGTCTTCAGTGATCTCTAATTTTTAGGGTCACTGTGTCTTGC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1038102 312 +   1314817 AGGTAATTATAATCTGTCCTCCTTATCTCATTAACCTTTCAGTAAAATT-----GTTAAATTAAATAAGCATAATAATTTCTGAGTT-AAAATTAGAATAAAAATTACCTTTTATTTTGATTACATGAATAATATAGTT----TTCATATTGTGCTAAGTCT--ATTTAGGATTATTAAATAAGATAA--------------------AATATTTTCT----TGCCTAAGCATGCAATTAAATTTCTTTATTTCATATACTTTTTATACTTCAATTTGAGAAATAATGCCCACATGCTGTTACTTTGGTCTTCAGTGATCTGTAATTTGTAGGGTCACTGTGTCTTGC
i cebCap1.NW_016107851v1       C 0 C 0
s dasNov3.JH570393               1694136 331 -   2296528 AGGTAATTATAATCTGTCCTTTTTCTCTGATTAATCT-TCAGTAAAATT-----CTGAGATAAAATAAACATAATTACTTCTGATTTAAAAATCAGAGtaaaaaatatcttttattttaattatatGGATGGTCCAGTCTTGATTTATATTATACTAAATCCCTGTTTATATTTGTAAACCCAGATAA-CTATTCTGTCATTTTTATCAGTTTTTTCTTGTATACTTAGGTATGCAGTTAGATTTATTTGCTTTATGTATTTTCAATACATTAATTTTGTGGATAATACCCATATTCTGCTACCTTGTTCTT----------TAATTTTCAAAGTAACTGAGTCTTGC
i dasNov3.JH570393             C 0 I 25

a score=169653.000000
s hg38.chr14_GL000009v2_random      9333 33 +    201709 TTAAATATATCATAGTAACAGGTTCAGTGAATA
s panTro5.chr9                  41683512 33 + 116767853 TTAAATATATCATAGTAACAAGTTCAGTAAATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96027019 33 - 114479721 TTAAATATATCATAGTAACAAGTTCAGTAAATA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          104598 33 -    116138 TTAAATATATCATAGCAACAGGTTCAGTGAATA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40789888 33 + 122973662 TTAAATATATCATCATAACAGGTTCAGTGAATA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111069152 33 - 111193037 TTAAATATATCATAATAACAGGTTCAGTGAATA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          339573 33 +    434444 TTAAATATATTATAACAACAGGTTCAGTGAATA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          386530 33 -    438202 TTAAATATATTATAACAACAGGTTCAGTGAATA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66436286 33 +  90373283 TTAAATATATCATAATAACAGATTCAGTGAATA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1484832 33 -   1547936 TTAAATATATTATAACAACAGGTTCAGTGAATA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64622249 33 -  72162052 TTAAATATATCATAACAACAGGTTCAGTGaata
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1038414 29 +   1314817 T----TTTATCATAACAACAGGTTCAGTGAATA
i cebCap1.NW_016107851v1       C 0 C 0
e dasNov3.JH570393               1694467 25 -   2296528 I

a score=5005.000000
s hg38.chr14_GL000009v2_random      9366 1 +    201709 T
s panTro5.chr9                  41683545 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96027052 1 - 114479721 T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          104631 1 -    116138 T
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40789921 1 + 122973662 T
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111069185 1 - 111193037 T
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          339606 1 +    434444 T
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          386563 1 -    438202 T
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66436319 1 +  90373283 T
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1484865 1 -   1547936 T
i manLeu1.NW_012105442v1       C 0 C 0
s cebCap1.NW_016107851v1         1038443 1 +   1314817 T
i cebCap1.NW_016107851v1       C 0 I 139
e dasNov3.JH570393               1694467 25 -   2296528 I
e saiBol1.JH378105              64622282 0 -  72162052 C

a score=814844.000000
s hg38.chr14_GL000009v2_random      9367 252 +    201709 C-ttta-ttttta-------attttatttacttatttttttttgagacagagttttgctcttgttgaccaggctgcagtgcaatgacacaatcttggatcattgcaacctccacctcccaggttcaaatgattctcctgcctcagcctcccaggtacctggaactacaggcatgcaccatcatgcccggctaattttttatattcagtagagatgaggttttaccatgttagtcagactggtctcgaact-----cctgacctcag
s panTro5.chr9                  41683546 251 + 116767853 C-TTTA-TGtttt-------attttatttacttatttttttt-gagacagagttttgctcttgttgcccaggctgcagtgcaatgatacaatcttggctcattgcaacctccacctcccaggttcaaatgatgcccctgcctcagcctcccaggtacctggaactacaggtatgcaccatcatgctcggctaattttttatattcagtagagatggggtttcaccatgttagtcaggctggtctagaact-----cctgacctcag
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96027053 251 - 114479721 C-TTTA-TGtttt-------attttatttacttatttttttt-gagacagagttttgctcttgttgcccaggctgcagtgcaatgatacaatcttggctcattgcaacctccacctcccaggttcaaatgatgcccctgcctcagcctcccaggtacctggaactacaggtatgcaccatcatgctcggctaattttttatattcagtagagatggggtgtcaccatgttagtcaggctggtctagaact-----cctgacctcag
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          104632 249 -    116138 C-TTTA-tttttt-------attttatttacttattttttt--gagacagagttttgctcttgttgaccaggctgcagtgcaatgacacaatcttggctcatcgcaacctccacctcccaggttcaaatgattctcctgcctcagcctcccaggtacctggaactacaggcatgcaccatcatgc-cggctaattttttgtatttagtagagatgaggtttcaccatgttagtcaggctggtctcgaact-----cctgacctcag
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40789922 248 + 122973662 C-ttta-tttttt-------attttatt---ttatttttttt-gagatagagttttgctcttgttgcctaggctgcagtgcaatgacacaatcttggctcattgcaccctccacctcccaggttcaaatgattctcctgcctcagcctcccaggtacctgggactacaggcatgcaccaccatgcccggctaattttttgtatttagtatagacggggtttcaccatgttggtcaggctggtcttgaact-----cttgacctcag
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111069186 249 - 111193037 TTTTCA-TTTTTTAATATTGAttt----------attttttt-gagacacagctttgctcttgctacccaggctgccgtgcaatgacacaatctcagctcgctgcaacctcgacctcccaagttcaagcaattctcctgcctcagcctcccaattacctgggactacaggcatgcacaaccatgcctggctaattttttgtatttagtagaaatgggatttcaccatgttggtcagggtggtcttgaact-----cctgaccttaa
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          339607 242 +    434444 CCttta-tttttt-------gttt----------ttattttt-gagacagaatttagcttttgttgcccaggctgcagtgcaatgacacaatgtcagctcattgtaacctccatctcctgggttcaagcgattctcctgcctcagcctcccaagtacctgggactacgggcatacaccaccatgctcggctaattttttgtatttagtagagacgaggtttcaccatgttggtcagtctgttctcaaact-----cctgacctcag
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          386564 242 -    438202 CCttta-tttttt-------gttt----------ttattttt-gagacagaatttagcttttgttgcccaggctgcagtgcaatgacacaatctcagctcattgtaacctccatctcctgggttcaagcgattctcctgcctcagcctcccaagtacctgggactacaggcatgcaccaccatgctcggctaattttttgtatttagtagagacgaggtttcaccatgttggtcagtctggtctcaaact-----cctgacctgac
i cerAty1.NW_012002921v1       C 0 I 5
s chlSab2.chr2                  66436320 241 +  90373283 Cttttattttttt-------gttt----------ttattttt-gagacagagtttagctctcgttgcccaggctacagtgcaatg--acaatctcagctcattgtaacctccatctcctgggttcaagcaattcttctgcctcagcctcccaagtacctgggactacaggcatgcaccaccatgctcggctcattttttgtatttagtagagatgaggtttcaccatgttggtcagtctggtctcaaact-----cctgacctcag
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1484866 247 -   1547936 CCttta-tttttt-------gttt----------ttattttt-gagacagaatttagcttttgttgcccaggctgcagtgcaatgacacaatctcagctcattgtaacctccatctcctgggttcaagcgattctcctgcctcagcctcccaagtacctgggactacaggcatgcaccaccatgctcggctaattttttgtatttagtagagacgaggtttcaccatgttggtcagtctggtctcaaactcctgacctgacctcag
i manLeu1.NW_012105442v1       C 0 C 0
e dasNov3.JH570393               1694467  25 -   2296528 I
e cebCap1.NW_016107851v1         1038444 139 +   1314817 I
e saiBol1.JH378105              64622282   0 -  72162052 C

a score=178694.000000
s hg38.chr14_GL000009v2_random      9619  76 +    201709 gtgatccacccacct-cagcctctcaaagtgctgggattacagacttgagccactgcccccagccatcttt-----------------------------------tttatt
s panTro5.chr9                  41683797  76 + 116767853 gtgatccacccacct-cgacctctcaaagtgctgggattacaggcatgagctactgaccccagccatctta-----------------------------------tttatt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96027304  76 - 114479721 gtgatccacccacct-cgacctctcaaagtgctgggattacaggcatgagctactgaccccagccatcttt-----------------------------------tttatt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          104881  76 -    116138 gtgatccacccacct-cggcctctcaaagtgctgggattacaggcatgagccactgcccccagccATCTTT-----------------------------------TTTACT
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40790170  80 + 122973662 gtgatccgcccacct-cagcctcccaaagtgctgggattacaggcatgagccactgcacccagccATCtttt-------------------------------ttatttatt
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111069435 111 - 111193037 gtgatccacccacct-cggcctcccaaagtgctgggattgcaggcatgagccactgaccctggcTATCTTtttatttatttatttatttatttatttatttatttatttatt
i macFas5.chr13                C 0 C 0
s cerAty1.NW_012002921v1          386811  73 -    438202 gtgatccacccgcctatggcctcccaaagtgctgggattacaggcatgagccactgcacctggccATCttt---------------------------------------tt
i cerAty1.NW_012002921v1       I 5 C 0
s chlSab2.chr2                  66436561  68 +  90373283 gtgatccacccacct-tggcctcccaaagtgctgggattacaagcatgagctgctgtacatggccATC-------------------------------------------T
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1485113  73 -   1547936 gtgatccacccgcct-tggcctcccaaagtgctgggattacaggcatgagccactacacctggccATCtttt--------------------------------------tt
i manLeu1.NW_012105442v1       C 0 C 0
e dasNov3.JH570393               1694467  25 -   2296528 I
e cebCap1.NW_016107851v1         1038444 139 +   1314817 I
e saiBol1.JH378105              64622282   0 -  72162052 C
e macNem1.NW_012012823v1          339849   0 +    434444 C

a score=370787.000000
s hg38.chr14_GL000009v2_random      9695 138 +    201709 tatttatttTAATTGTTGTTCTGG-AAATCCTGGGATGCATAGAC---AGTGAATATCt-----------------------------------tttttgtt-ttttgagacagaatctcactctgtctcccaggctgcagtgcagtggtgctatcttggttaactgcaacctctgct
s panTro5.chr9                  41683873 141 + 116767853 tatttatttTAATTGTTGTTCTGG-AGATCCTGGGATGCATAGAC---AGTGAATATCT---------------------------------Cttttttattgttttgagatggagtctcactctgtctctcaggctgcagtgcagtggtgtgatctcagttaactgcaacctccgtc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96027380 141 - 114479721 tatttatttTAATTGTTGTTCTGG-AGATCCTGGGATGCATAGAC---AGTGAATATCT---------------------------------Cttttttattgttttgagatggagtctcactctgtctctcaggctgcagtgcagtggtgtgatctcagttaactgcaacctccgtc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          104957 136 -    116138 TATTTATTTTAATTGTTGTTCTGG-AGATCCTGGGATGCATAGAC---AGTGAATATCt-----------------------------------tttttgtt-ttttgagatggagtctcactctgtctcccaggctgcagtgcagtggtg-gatct-ggttaactgcaacctctgcc
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40790250 169 + 122973662 tatttatttTAATTTTTGCTCTGG-AGATCCTGGGACGCATAGACATTAGTGAATATCtttttt-ttttttttttttt------tttttttttttttttttt-ttttgagatggagtctcactctgtctcccaggctggagtgcagtgatgcgatctctattaactgcaacctccacc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111069546 153 - 111193037 tatttatttTAAATTTTGTTCTGG-AGATCCTGGGATGCATAGAC---AGTGAATATCttttttatttttattt---------------------tttaatttttttgagatggagtctcactctgtcttccaggctggagtgcagtagtgtgatctcagttaagtgaaaccaccgcc
i macFas5.chr13                C 0 C 0
s cerAty1.NW_012002921v1          386884 170 -    438202 ttttttttttaatttttgttCTGGAAGATCCTGGGATGCATAGAC---AATGAATATCCTTTtt-tgtttgtttgtttgc----ttgtttgtttgtttgtttgttttgagacagagtctcactctgtcacccaggctggagtgcagtagcacgatcttggctaactgcaacctccact
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66436629 161 +  90373283 TTTTTTTTTTAATTTTTGTTCTGG-AGATCCTGGGATGCATAGAC---AATGAATATCCTTTtt-tgtttgtttgtttgc------------ttgtttgtttgttttgagacggagtctcactctgtcacccaggctggagtgcagtagcacgatgttggctaactgcaacctccact
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1485186 174 -   1547936 ttttttttttaatttttgttttGGAAGATCCTGGGATGCATAGAC---AATGAATATCCTTTtt-tgtttgtttgtttgcttgtttgtttgtttgtttgtttgttttgagacagagtctcactctgtcacccaggctggagtgcagtagcacgatcttggctaactgcaacctccact
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64622282 126 -  72162052 tattttttaaaatttttGTTCTGG-AGATCCTGG--------------AGTAGCt-------------------------------------tttttttttttttttgacatggagtctcactttgtcacctaggctggagtacagtggctcagtctcagctcactgcaacctccatc
i saiBol1.JH378105             C 0 C 0
e dasNov3.JH570393               1694467  25 -   2296528 I
e cebCap1.NW_016107851v1         1038444 139 +   1314817 I
e macNem1.NW_012012823v1          339849   0 +    434444 C

a score=35042.000000
s hg38.chr14_GL000009v2_random      9833 10 +    201709 ttctaggctc
s panTro5.chr9                  41684014 10 + 116767853 ttctaggctc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96027521 10 - 114479721 ttctaggctc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          105093 10 -    116138 ttccaggctc
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40790419 10 + 122973662 ttctagtctc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111069699 10 - 111193037 ttctaggctc
i macFas5.chr13                C 0 C 0
s cerAty1.NW_012002921v1          387054 10 -    438202 tcctgggttt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66436790 10 +  90373283 tcctgggttc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1485360 10 -   1547936 tcctgggttc
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1               7 10 +    168452 ttctaggctc
i colAng1.NW_012121088v1       N 0 C 0
s saiBol1.JH378105              64622408 10 -  72162052 tcctgagttt
i saiBol1.JH378105             C 0 C 0
e dasNov3.JH570393               1694467 25 -   2296528 I
e cebCap1.NW_016107851v1         1038444 139 +   1314817 I
e macNem1.NW_012012823v1          339849  0 +    434444 C

a score=717786.000000
s hg38.chr14_GL000009v2_random      9843 138 +    201709 aagcgattctcctgcctcagcctcccgggtagctgaaattacaggtgccagctaccatgcccagctaatttttgtatttttattagagatgaggttttgccatgttggccaggctggtcttgaactcctgacctcagg
s panTro5.chr9                  41684024 138 + 116767853 aagcgattctcctgcctcagtctcccaagtagctgaaattacaggtgccagcctccatgcccagctaatttttgtacttttattagagatgaggttttgccatgttggccaggctggtcttgaactcctgacctcagg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96027531 138 - 114479721 aagcgattctcctgcctcagtctcccgagtagctgaaattacaggtgccagcctccatgcccagctaatttttgtacttttattagagatgaggttttgccatgttggccaggctggtcttgaactcctgacctcagg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          105103 138 -    116138 aagcgattctcctgccttggcctcctgagtagctgaaattacaggtgccagccaccatgcccagctaatttttgtatttttattagagatgaggttttgccatgttggccaggctgttcttgaactcctgacctcagg
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40790429 137 + 122973662 aagcgattcttctgcctcagcctcctgtgtagctgaaattacaggttcccgccaccatgcccagctaatttttgtatttttagtagagacaagg-tttgccatgttggccaggctgatcttgaactcctgacctcagg
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111069709 138 - 111193037 aagcgattctcctgcctcagcctcccgagtagctgaaattacaggtgcttgccatcatgcccagctaatttttgtatttttagtagacacgaggttttgccatgttggtcagactggtcttgaactcattacctcagg
i macFas5.chr13                C 0 I 25
s cerAty1.NW_012002921v1          387064 138 -    438202 aagtgattctcctgcctcagcctcctgagtagctgaaattacaggagcctgccaccatgcccagctaatttttgtatttttagtagagacgaagtttcaccatgttggccaggctggtcttgaactcctgacctcagg
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66436800 138 +  90373283 aagcgattctccttcctcagcctcctgagtagctgaaattacagaagcctgccaccatgcccggctaatttttgtatttttagtagagacgaagtttcaccatgttggccaggctggtcttgaactcctgacctcagg
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1485370 138 -   1547936 aagtgattctcctgcctcagcctcctgagtagctgaaattacaggagcctgccaccatgcccagctaatttttgtatttttagtagagacgaagtttcaccatgttggccaggctggtcttgaactcctgacctcagg
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1              17 138 +    168452 aagcgattctcctgcctcagcctcctgagtagctgaaattagaggtgcctgccatcatgcccagctaatttttgtatttttagtagagaagaggttttgccatgttggccagactggtcttgaactcatttcctcagg
i colAng1.NW_012121088v1       C 0 I 25
s saiBol1.JH378105              64622418 138 -  72162052 aagcgattctcctgcctcagtctcctgagtggctgggattacaggtgtgcgccaccacacctggctaatttttgtatttttagtagggacgaggtatcaccatgttggctaggctggtcttgaactcctgacctccag
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1038583 138 +   1314817 aagcgattctcctgcctcagtctcctgagtagctgggattacaggtgtgtgccatcacacctggctaatttttgtatttttagtagagacgaggtgtcacaatgttggccaggctggtcttgaactcctgacctacag
i cebCap1.NW_016107851v1       I 139 C 0
e dasNov3.JH570393               1694467  25 -   2296528 I
e macNem1.NW_012012823v1          339849   0 +    434444 C

a score=494180.000000
s hg38.chr14_GL000009v2_random      9981 83 +    201709 tg--atccacccacctttgcctcccaaagtgctgagattacaggcatgagccactgagcccagcTG--AATATTTtttttaaatcaa
s panTro5.chr9                  41684162 83 + 116767853 tg--atccacccacctttgcctcccaaagtgctgagattacaggcatgagccactgagcccagcTG--AATATCTtttttaaatcaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96027669 83 - 114479721 tg--atccactcacctttgtctcccaaagtgctgagattacaggcatgagccactgagcccagcTG--AATATCTtttttaaatcaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          105241 83 -    116138 tg--atccacccacctttgcctcccaaagtgctgagattacaggcatgagccactgagcccagcTG--AATATATtttttaaatcaa
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40790566 83 + 122973662 cg--atccacccacctttgcctcccaaagtgctgagattacaggcatgagccactgagcccagcTG--AATATCTtttttaaatcaa
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111069872 85 - 111193037 tg--atccccccacctttgccacccaaagtgctgagattacaggcataagccactgagcccagTTGTGAATATCTtttttaaatcaa
i macFas5.chr13                I 25 C 0
s macNem1.NW_012012823v1          339849 80 +    434444 tg--aatcacccactct-----cccaaagtgctgagattacaggcatgagccaccgtgcccagcTGTGAATACCTtttttaagtcag
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          387202 85 -    438202 tg--atccacccacctctgcctcccacagtgctgagattacaggcatgagccaccatgcccagcTGTGAATATCTtttttaagtcag
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66436938 85 +  90373283 tg--atccacccacctctgtctcccaaagtgccgaggttacaggcatgagccactgtgcccagcTGTAAATATCTtttttaagtcag
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1485508 85 -   1547936 tg--atccacccacctctgcctcccaaagtgctgagattacaggcatgagccactgagcccagTTGTGAATATCTtttttaaatcaa
i manLeu1.NW_012105442v1       C 0 I 1858
s colAng1.NW_012121088v1             180 85 +    168452 tg--atccccccacctttgcctcccaaagtactgagattacaggcgtgagccactgagcccagTTGTGAATATCTTCtttaaatcaa
i colAng1.NW_012121088v1       I 25 C 0
s saiBol1.JH378105              64622556 85 -  72162052 tg--atccacgcacctcagcctcctaaagtcctgggattacaggcatgagccaccgtgctcagcTGTGAATATCTTTTTTAGATCAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1038721 87 +   1314817 tgatatccacccacctcagcctcctaaagtcctgggattacaggcatgagccaccatgcccagcTGTGAATATCTTTTTTAGATCAA
i cebCap1.NW_016107851v1       C 0 C 0
e dasNov3.JH570393               1694467 25 -   2296528 I

a score=2520520.000000
s hg38.chr14_GL000009v2_random     10064 423 +    201709 taaccttatttcttagagtagttttaggttcacagcaaaattgagaggaaggtacagagatttctcatatatcccatgcctcccacacacgcatagcctcccccattattagtattttccaccagagagtggtccatttgttacaactgatgaactt-acattgacacattataatcacttgaagttcatagtttacatcaggcctcactcttgatgctgtacattctgtgaatttggacaaatatataatgacatgacatgtatctattactgtaatattatcgacagaacagtttcactgccct-aaaaattctctgtgctatgcctgttcatctctccctttctccctagcaactcgtgacaaccattgatgtttactctgtcttcatagttttac-ttttttcagaagagtcatatagttgg
s panTro5.chr9                  41684245 419 + 116767853 tatccttatttcttagagcagttttaggttcacagcaaaattgagaggaaggtacagagatttctcatatatcccacaccttccacacacacatagcctcccccattattagtattttccaccacagagtggtccatttgttacaactgatgaactt-acattgacacgttataatcactcaaagttcataatttacatcaggcctcactcttgatgctgtacattctgtgaatttggacaaatatataatgacatgacatgtatctattactgtaatattatcgacagaacagtttcactgccct-aaaaatt----atactatgcctgttcatctctcccttactccctagcaactcgtggcaaccattgatgtttactctgtcttcatagttttac-ttttttcagaagagtcatatagttga
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96027752 423 - 114479721 tatccttatttcttagagcagttttaggttcacagcaaaattgagaggaaggtacagagatttctcatatatcccacgccttccacacacacatagcctcccccattattagtattttccaccacagagtggtccatttgttacaactgatgaactt-acattgacacgttataatcactcaaagttcataatttacatcaggcctcactcttgatgctgtacattctgtgaatttggacaaatatataatgacatgacatgtatctattactgtaatattattgacagaacagtttcactgccct-aaaaattctctatgctatgcctgttcatctctcccttactccctagcaactcgtggcaaccattgatgtttactctgtcttcatagttttac-ttttttcagaagagtcatatagttgg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          105324 422 -    116138 taaccttatttcttagagcagttttaggttcacagcaaaattgagaggaaggtacagagatttctcatatatcccatgcctcccacacatgcatagcctcccccattattagtattttacaccagagagtggtacatttgttacaactgatgaactt-acattgacacgttataatcactcgaagttcatagtttacatcaggcttcacttttgatgctgtacattctgtcaatttgaacaaatgtataatgacatgacatgtatctattactgtaatattattgacagaacagtttcactgccct--aaaattctctatgctatgcctgttcatctctccctttctccctagcaactcgtggcaaccattgatgtttactctgtcttcatagttttac-ttttttcagaagagtcatatagttgg
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40790649 424 + 122973662 taaccttatttcttagagcagctttaggttcacagcaaaactgagaggaaggtacagagatttctcatatattccatgcctcccacacatgcatagcctcccccattattagtattttccaccagagagtggtacatttgttacaactgatgaacttaatattgacacattataatcactcaaagttcatagtttacatcaggcttcactcttgatgctgtacgttctgtgaatttggacaaatgtataatgacatgacatgtatctattactgtaatattattgacagaacagtttcactgccct-aaaaattctctctactatgcgtgttcatctctccctttcaccctagcaactcgtggcaaccattgatctttactgtgtcttcatagttttac-ttttttcggaagagtcatatagttgg
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111069957 406 - 111193037 cagctttatttcttagagcagttttaggttcagagcaaaattgagaggaaggtacagagatttctcatatattccatgcctcc--cacgtgcatagcctcccccatgattagtattttccacc--agagtggtacatttgttacaactgatgaactt-acactgacacattataatcactcaaagttcat-atttacatcaggcttcactctggatgctgtacattctgtgaacctggacaactgtataatgatatgacatctatctattactgtaatattatcgacagaacagtttcactaccct-aaaaattctctatactatgcctgttcatctctcattttctccctagcaactcctggcaaccattgatctttactctatcttcatagttttat-tattttcagaaGAG------------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          339929 416 +    434444 taactttatttcttagagcagttttaggttcacagcaaaattgagaggaaggtacagagatttctcatatgttccatgcctcccacacatgcgtagcctcccctattattactattttccacc--agagtggtacatttgttacaactgatgaacct-acattgacacattctaatcactcaaagttcatggtttacttcaggcttcactcttgatgctgtacattctgtgaatttggacaaatgtgtaatgatatg-----tatctattactgtaatattattgacagaacagtttcactgccct-aaaaattctctatgatatgcctgttcatctctcactttctccctagcaactcctggcaaccattgatctttactctgttgtcacaattttac-ttttttcagaagagtcatatagttgg
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          387287 416 -    438202 taactttatttcttagagcagttttaggttcacagcaaaattgagaggaaggtacagagatttctcatatgttccatgcctcccacacatgcgtagcctcccctattattactattttccacc--agagtggtacatttattacaactgatgaacct-acattgacacattctaatcactcaaagttcatagtttacttcaggcttcactcttgatgctgtacattctgtgaatttggacaaatgtgtaatgatatg-----tatctattactgtaatattattgacagaacagtttcactgccct-aaaaattctctataatatgcctgttcatctctcactttctccctagcaactcctggcaaccattgatctttactctgttgtcataattttac-ttttttcagaagagtcatatagttgg
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66437023 417 +  90373283 taactttatttcttagagcagttttaggttcacagcaaaattgagaggaaggtacagagatttctcatatgttccatgcctcccacacatgcgtagccttccctattattactattttccacc--agagtggtacatttgttacaactaataaacct-acattgacacattctaatcagtcaaagttcatagtttacttcaggcttcactcttgatgctgtacattctgtgaatttggacaaatgtataatgatatg-----tatctattattgtaatattattgacagaacagtttcactgccct-aaaagttctctataatatgcctgtttatctctcactttctccctagcaactcctggcaaccattgatccttactctgtcgtcatagttttactttttttcagaagagttatatagttgg
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1487451 415 -   1547936 taactttatttcttagagcagttttaggttcacagcaaaattgagaggaaggtatagagatttctcatatgttccatgcctcccacacatgcgtagcctcccctattattactattttccacc--agagtggtacatttgttacaacggatgaactt-acattgacacattataatcactcaaagttcata-tttacatcaggcttcactcttgatgctgtacattctgtgaatttggacaaatgtgtaatgatatg-----tatctattactgtaatattattgacagaacagtttcactgccct-aaaaattctctataatatgcctgttcatctctcactttctccctagcaactcctggcaaccattgatctttactctgttgtcataattttac-ttttttcagaagagtcatatagttgg
i manLeu1.NW_012105442v1       I 1858 C 0
s colAng1.NW_012121088v1             265 408 +    168452 caattttatttcttagagcagttttagtttcagagcaaaattgaaaggaaggtacagagatttctcatatattccatgcctcc--cacatgcatagcctcccccatgattagtattttccacc--agagtggtacatttgttacaactgatgaactt-acattgacatattataatcactcaaagttcatagtttacatcaggcttcactcttgatgctgtacattctgtgaacttggacaactgcataatgatatgacatgtatctattactgtaatgttattgacagaacagtttcactaccctaaaaaattctctatactatgccagttcatctctcactttctccctagaaactcctggcaaccattgatctttactctgtcttcatagttttat-ttttttcagaaGAG------------
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64622641 415 -  72162052 TAacttcatttcttagaacagttttatgttcacagaaaaattgagaggaaagcacagaggtttctcatatgctccatgcctcccacacatgcacagccttccccattattagtattttccatc--agagtggtacatttgttacaactgatgaacct-atgttgatacatcatagtcactcaaagttcatagttcacatcaggcttcacacttgagg-ggtacattctgtgaactgggacaaatatataatgacatg-----tatctattgttttaatattatggacagaaccgtttcactgccct-aaaagttctttatactatgcctgttcatctttccctttctccctagcaactcctggcaaccactgatctttactctgtcttgatagttttac-atttttcagaagagtcatatagttgg
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1038808 412 +   1314817 TAacttcatttcttagaacagtttgacattcacggcaaaattgagaggaaagtacagagatttcttatatgctccatgcctcccacacatgcacagccttccccattattggtattttccatc--agagtggtacatttgttacaactcatgaacct-acattgatacattatagtcactcaaagttcatagtttacatcaggcttcacccttgatg-ggtacattctgtgaatttggacaaatgt---atgacatg-----tatctattgttttaatattatggacagaacagtttcactgccct-aaaagttctttatactatacctgttcatctttccctttctccctagcaactcctggcaaccactgatctttactctgcctttagagttttaa-atttttcagaagagtcatatagttgg
i cebCap1.NW_016107851v1       C 0 C 0
e dasNov3.JH570393               1694467  25 -   2296528 I

a score=2343198.000000
s hg38.chr14_GL000009v2_random     10487 401 +    201709 aatAAGAAG---AGTGGATATCTTTTTGAGTAGTTAAAAA-ATTAAAGCTCCATGGCAGTTGAATGTAGTCATTTAAGATG----ttctttgtcct----tttg-tttttctt-ttgcttcttTA--TCATTGTAAAGAATGATGTATTCTGATGAGATATGATTTACATACTTAGAAAACATGATTTGTATAGATATGTGGCACATAATAGAAAGGGTTGAGGAAAAGGACACCACGCCGTACTACACAGCACAACC----TGGAGCATCTTGCTCTGTGAGGTGGGTCCAGATAGACTCTTTAGCAATGGAAG--------------AGGACAAGTGCAAAGTGTTGTGCTTTATAAAACTGGAATCACAA---AGTCTTTCATACTT-ACAT-TCGGTTGGAAATAAGACCAGGCA-TGAATGCTA------------------TTA-GG-----------------------------------------------TAAATAC
s panTro5.chr9                  41684664 402 + 116767853 aatAAGAAG---AGTGGATATCTTTTTGAATAGTTAAAAA-ATTAAAGCTCCATGGCAGTTGAATGTAGTCATTTAAGATG----ttctttgtcct----tttg-tttttctt-ttgcttcttTA--TCATTGTAAAGAATGGTGTATTCTGATGAGATATGATTTACATACTTAGAAAACATGATTTGTATAGATATGTGGCACATAATAGAAAGGGATGAGGAAAAGAACACCACACTGTACCACACAGCACAACC----TGTAGCATCTTGCTCTGTGAGGCGGGTCCAGATAGACTCTCTAGCAATGGAAG--------------GGGACAAGTGCAAAGGGTTGTACTTTATAAAACTGGAATCACAA---AGTCTTTCATACTT-ACCT-TCGGTTGGAAATAAGACCAGGCAGTGAATGCTA------------------TTA-GG-----------------------------------------------TAAATAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96028175 402 - 114479721 aatAAGAAG---AGTGGATATCTTTTTGAATAGTTAGAAA-ATTAAAGCTCCATGGCAGTTGAATGTAGTCATTTAAGGTG----ttctttgtcct----tttg-tttttctt-ttgcttcttTA--TCATTGTAAAGAATGGTATATTCTGATGAGATATGATTTACATACTTAGAAAACATGATTTGTATAGATATGTGGCACATAATAGAAAGGGTTGAGGAAAAGGACACCACACTGTACCACACAGCACAACC----TGGAGCATCTTGCTCTGTGAGGTGGGTCCAGATAGACTCTCTAGCAATGGAAG--------------GGGACAAGTGCAAAGGGTTGTACTTTATAAAACTGGAATCACAA---AGTCTTTCATACTT-ACCT-TCGGTTGGAAATAAGACCAGGCAGTGAATGCTA------------------TTA-GG-----------------------------------------------TAAATAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          105746 402 -    116138 aatAAGAAG---AGTGGATATCTTTTTGAATAGTTAAAAA-ATTAAAGCTCCATGGCAGTTGAATGTAGTCATTTAAGATG----ttctttgtcct----tttg-tttttctt-ttgcttcttTA--TCATTGTAAAGAATGGTATATTCTGATGAGATATGCTTTACATACTTAGAAAACATGATTTGTATACATATGTGGCACATAATAGAAAGGGTTGAGGAAAAGGACACCACGCCATACCACACAGCACAACC----TGGAGCATCTTGCTCTGTGAGGTGGGTCCAGATAAGCTCTCTAGCAATGGAAG--------------GGGACAAGTGCAAAGGGTTGTACTTTATAAAACTGGAATCACAA---AGTCTTTCATACTT-ATCT-TCAGTTGGAAATAAGACCAGGCAGTGAATGCTA------------------TTA-GG-----------------------------------------------TAAATAT
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40791073 400 + 122973662 aataatac----agtggatatctttttGAATAGTTAAAAA-ATTAAAGCTCCATGGCAGTTGAATGTAGTCATTTAAGATG----ttctttgtcct----tttg-tttttctt-ttgcttcttTA--TCATTGTAAAGAATGATATATGCTGATGAGATATGCTTTACGTACTTAGGAAACATTATTTGTATAGATATTTGGCACATAATAGAAAGGGTTGAGGAAAAGGACACCATGCAGTACCACACAGCACAAAC----TGGAGCATCTTGCTCTGTGAGGTGGGTCCAGATAGACTCTCTAGCAATGTAAG--------------GGGACAAGTGCAAGGGGTTGTACTTTATAAAACTGGAATCACAA---AGTCTTTCATACTT-ACCT-TCAGTTGGAAATAAGACCAGGCAGTGAATGCTA-------------------TA-GG-----------------------------------------------TAAATAC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111070363 390 - 111193037 -----TAC----AGTGGATATTTTTTTGAATAGTTAAAAA-ATTAAAGATCCATGGTAATTGAACGTAGTCATTTAAGATGT---TCCTTGTCCTT----TTTG-TTTTCCTT-TTGCTTCTTTA--TCACTGTAAAGAATGATATATGCTGATGAGATGCGCTTTACATACTCAGAAAACGTGATTTGTATAGATATTTGGGACATAATAGAAAGGGGTGAGGGAAAGGACACCATGCCGTGCCACACGGCACAAAC----TGGAGTATCTTGCTCTATGA------TAGAGATAGACTCCCTCGCAATGGAAG--------------GGGACAAGCACAACGGGTTGGACTTCATAAAAGTGGAATCACTA---AGTCTGTCATATTT-ACCT-TCGGTTGGAGTTCAGACCAGGCAGTGAATGCTA-------------------TA-GG-----------------------------------------------TAAATAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          340345 401 +    434444 aataatac----attgggtatctttttGAATAGTTAAAA-----AAAGCTCCATTGTAATTGAATGTAGTCATTTAAGATGTAtgtactttgtcct----tttg-tttttcct-ttgcttcttta--tcattGTAAAGAATGATATATGCTGATGACATATTCCTTACATACTTAGAAAACATGATTTGTATAGGTATTTGTCACATAATGGAAAGGGTTGAGGAAAAGGACACCATGCAGTACCACACAGCACAAAC----TGGGGCCTCTTGCTCTATGAGGTGGGTCCCGATAGACTCTCTAGCAGTGAAAG--------------GGGACAAGTTCCAGGGGTTGTACTTTATAAAACTGGAATCACAA---AGTTTTTCTTACTT-ACCT-TTGGTTAGAAATAAGAGCAGACAGTGAATGCTA-------------------TAGGG-----------------------------------------------TAAATAC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          387703 400 -    438202 aataatac----attgggtatctttttGAATAGTTAAAA-----AAAGCTCCATTGTAATTGAATGTAGTCATTTAAGATGTAtgtactttgtcct----tttg-tttttcct-ttgcttcttta--tcattGTAAAGAATGATATATGCTGACGACGTATTCCTTACATACTTAGAAAACATGATTTGTATAGGTATTTGTCACATAATGGAAAGGGTTGAGGAAAAGGACACCATGCAGTACCACACAGCACAAAC----TGGGGCCTCTTGCTCTATGAGGTGGGTCCAGATAGACTCTCTAGCAGTGAAAG--------------GGGACAAGTTCCAGGGGTTGTACTTTATAAAACTGGAATCACAA---AGTTTTTCTTACTT-ACCT-TTGGTTAGAAATAAAAGCAGACAGTGAATGCTA-------------------TA-GG-----------------------------------------------TAAATAC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66437440 396 +  90373283 aataatac----attgggtatctttttGAATAGTTAAAA-----AAAGCTCCATCATAATTGAATGTAGTCATTTAAG----Atgtactttgtcct----tttg-tttttcct-ttgcttcttta--tcattGTAAAGAATGATATATGCTGATGACATATGCTTTACATACTTAGAAAACATGATTTGTATAGGTATTTGCCACATAATGGAAAGGGTTGAGGAAAAGGACACCATGCAGTACCACACAGCACAAAC----TGGGGCCTCTTGCTCTATGAGGTGGGTCCAGATAGACTCTCTAGCAGTGAAAG--------------GGGACAAGTTCCAGGGGTTGTACTTTATAAAACTGGAATCACAA---AGTTTTTCTTACTT-ACCT-TCGGTTAGAAATAAGAGCAGACAGTGAATGCTA-------------------TA-GG-----------------------------------------------TAAATAC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1487866 400 -   1547936 agtaatac----attgggtatctttttGAATAGTTAAAA-----AAAGCTCCATTGTAATTGAATGTAGTCATTTAAGATGTAtgtactttgtcct----tttg-tttttcct-ttgcttcttta--tcattGTAAAGAATGATATATGCTGATGACGTATTCCTTACATACTTAGAAAACATGATTTGTGTAGGTATTTGTCACATAATGGAAAGGGTTGAGGAAAAGGACACCGTGCAGTACCACACAGCACAAAC----TGGGGCCTCTTGCTCTATGAGGTGGGTCCAGATAGACTCTCCAGCAGTGAAAG--------------GGGACAAGTTCCAGGGGTTGTACTTTATAAAACTGGAATCACAA---AGTTTTTCTTACTT-ACCT-TTGGTTAGAAATAAGAGCAGACAGTGAATGCTA-------------------TA-GG-----------------------------------------------TAAATAC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1             673 410 +    168452 -----TAC----AGTGGATATCTTTTTGAATAGTTAAAAA-ATTAAAGCTCCATGGTAATTGAATGTAGTCATTTAAGATGt---tccttgtcctt----tttg-ttttcctt-tttcttcttTA--TCACTGTAAAGAATGATATATGCTGATAACATACACTTTACATACTCAGAAAACATGATTTGTATAGATGTTTGGGACATAATAGAAAGGGTTGAGGAAAAGGACACCATGCCGTGCCACACAGCACAAAC----TGGAGTATCTTGCTCTATGATGTGGATCCAGATAGACTCTCTAGCAATGGAAGGGGACAAGCACAATGGGACAAGCACAATGGGTTGGACTTTATAAAAGTGGAATGACTA---AGTCTTTTATACTT-ACCT-TCGGTTGGAAATAAGACCAGGTAGTGAATGCTA-------------------TA-GG-----------------------------------------------TAAATAC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64623056 381 -  72162052 aatagtat----agtggctatc-ctttGAATAGTTAAAAACATTACAGTTTCTTGGTAATTGAATGTAGTCATTTAAGAAG----TTCTTTGTCCT----TTTGTTTTTTCTT-TTGCTTCTTTA--TCATTG-TAAGA---------TCTGATGACATATGCTTTGCATACTTAGGAAACATGCTTTGTATAGATATTTGCCACATAATGAAAAGGGTTGAGGAAAATGACAGCA----------CCCAGCACCAAC----TGGAGCATCTTGCTCTATGAGGTGGGTCCAGATAGAATCTCCAGCAGTGGAAG--------------GGGACAAGCCCAGAAGGTTGTACTTCATAAAACTGGAATCACCA---AGTCTCCCATGCTT-ACCT-TTGGTTGGAAATAAGACCAGACAGTGAATGCTA-------------------TA-GG-----------------------------------------------TAAATAG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1039220 382 +   1314817 aataatat----agtggatatc-ttttGAATAGTTAAAAAAATTAAAGTTTCATGGTAATTGAATGTAGTCATTTAAGATG----TTCTTTGCCCT----TTTGTTTTTTCTT-TTGCTTCTTTA--TCATTGTTAAGA---------TCCGATGACATATGATTTACATACTTAGGAAACGTGCTTTGTATAGATATTTGCCACATAATGAAAAGGGTTGAGGAAAATGACACCA-----------CCAGCACAAAC----TGGAGCATCTTGCTCTATGAGGTGGGTCCAAATAGACTCTCTAGCAGTGGAAG--------------GGGACAAACTCAAAAGGTTGTACTTCATAAAACTGGAATCACCA---AGTCTCTCATACTTAACCT-TTGGTTGGAAATAAGACCAGACAGTGAATGCTG-------------------TA-GG-----------------------------------------------TAAATAC
i cebCap1.NW_016107851v1       C 0 C 0
s dasNov3.JH570393               1694492 473 -   2296528 AATAGGAAGTTCTATGGCTATTGTTTTGAACATTTAGAA--ATTAACGTTCTGAGATAATTGAATGTAGTCATTTAAGATG----TTCTTTGTCCTTTCCTTTG-TTTTTCTTACTTTTTCTTTAATCCATT----AGCATGGGAT---CTGATGACATAAGCCTTATAAGCTGAAAAAGCATGATTTCTGTAGACAATTGCCACATAATGGGGAGGGTTGAGAAAAATGACATGATGCAGTACTACATACCGCTAACTCTTTGGACCATTCTGCTCTATGAGGTGGGTCCAGATAGACACTTTAGCACTGGAAG--------------AAGACCATCTCAAGGAGCTATACTTT----AACTGGAATCATCATAGAATCTTTTGTTCTT-TTCTGGTAACTGGAAATGAGGTCAGGGTGTGAATGCTGTGGAGTTTTAAAAAAAtttta-ggaggactgggcattgagcccaggaccttgtacatgggaagcaggtgcacaaacac
i dasNov3.JH570393             I 25 I 151

a score=1415839.000000
s hg38.chr14_GL000009v2_random     10888 244 +    201709 ATAAGTTCCTCACTGATCCTCTTCCTTTGAGGGATGAGGTTGACAACAGCCTGTATTATGATGGCATGACTCACCTACAACTA--GATTCTGTCATGAGAGATGACAAGGGAGTTTTGCTTTATGCGAGGTGAAAAAAA--TTTTTT-CTCCTACTAGGGAGATGGGCAAACATTAGAACATTCTGGTAGTAAAAGGGCATTGATA--GTTTCCTTTCTATATATTTTTTCACATCAGATAATATTGCCCG
s panTro5.chr9                  41685066 244 + 116767853 ATAAGTTCCTCACTGATCCTCTTCCTTTGAGGGATGAGGTTGACAACAGCCTGTATTATGATGACATGACTCACCTACAACTA--GATTCTGTCATAAGGGATGACAAGGGAGTTTTGCTTTATGCGAGGTGAAAAAAA--TTTTTT-CTCCTACTAGGGAGAAGGGCAAGCATTAGAACATTCTGGTAGTAAAAGGGCATTGATA--GTTTTCTTTCTATATATTTTTTCACATCAGATAATACTGCCCG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96028577 244 - 114479721 ATAAGTTCCTCACTGATCCTCTTCCTTTGAGGGATGAGGTTGACAACAGCCTGTATTATGATGACATGACTCACCTACAACTA--GATTCTGTCATGAGGGATGACAAGGGAGTTTTGCTTTATGCGAGGTGAAAAAAA--TTTTTT-CTCCTACTAGGGAGAAGGGCAAGCATTAGAACATTCTGGTAGTAAAAGGGCATTGATA--GTTTTCTTTCTATATATTTTTTCACATCAGATAATACTGCCCG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          106148 243 -    116138 ATAAGTTCCTCACTGATCCTCTTCATTTGAGGGATGAGGTTGACAACAGCCTGTATTATGATGACACGATTCACCTACAACTA--GATTCTGTCGTGAGGGATGACAAGGGAGTTTTGCTTTATGTGAGGTG-AAAATT--TTTTTT-CTCCCACTAGGGAGAAGGGCAAGCATTAGAACATTCTGATAGTAAAAGGGCATTGATA--GTTTTCTTTCTATATATTTTTTCACATCAGATAATACTGCCCG
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40791473 245 + 122973662 ATAAGTTCCTCACTGATCCTCTTCCTTTGAGGGATGAGGTTGACAACAGCCTGTATTATGATGGTGTGACTCACCTACAACTA--GATTCTGTCGTGAGGGATGGCAAGGGAGTTTTGCTTTATATGAGGTGAAAAAGAATTTTTTT-CTCCTACTAGGGAGAAGGGCAAGCATTGGAACATTGTGGTAGTAAAAGGACATTGATA--GTTTTCTTTCTATATA-TTTTTCACATCAGATAATACTGCccg
i nomLeu3.chr1a                C 0 I 192
s macFas5.chr13                111070753 245 - 111193037 ATGTGTTCCTCACTGATCCTCTTCCTTTGAGGTATGAGGTTGACAAGAGCCTGCATTATGATGACATGACTCATCTACAACTA--GATTCTGTCGTGAGGGATGGTAAGGGAGTTTTGCTTGATGTGAGGTGAAAAAGAATTTTTTT-CTCCTACTTGGGAGAAGAGCAAGCATTGGAACATTCTAGTAGTAAAAGGGCATTGATA--GTTTTCTTTCTATATA-TTTTTCACATCAGATAATACTGCCCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          340746 244 +    434444 ATAGGTTCTTCACTGATCCTCTTCCTTTGAGGGATGAGTTTGACAACAAGCT--ATTAAAATGACATGACTCACCTACATCTA--GATTCTGTCATGAGGGATGGCAAGAGAGTTTTGCTTTATGTAAGGTGAAAAAGAATTTTTTT-CCCTTACTAGGGAGAAGGGCAAACATTGGAACATTCTGGTAGTAAAAGGGCATTGATATGGTTTTCTTTCTATACA--TTTTCATGTCATATAGTACTGCCTG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          388103 244 -    438202 ATAGGTTCCTCACTGATCCTCTTCCTTTGAGGGATGAGTTTGACAACAAGCT--ATTAAAATGACATGACTCACCTACAACTA--GATTCTGTCATGAGGGATGGTAAGGGAGTTTTGCTTGATGTGAGGTGAAAAAGAATTTTTTT-CCCTTACTAGGGAGAAGGGCAAACATTGGAACATTCTGGTAGTAAAAGGGCATTGATACGGTTTTCTTTCTATACA--TTTTCATGTCATATAGTACTGCCTG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66437836 245 +  90373283 ATAGGTTCCTCACTGATCCTCTTCCTTTGAGGGATGAGTTTGACAACAGGCT--ATTATAATGACATGACTCACCTACAACTA--GATTCTGTCAGGAGGGATGGCAAGAGAGTTTTGGTTTATGTAAGGTGAAAAAGAATTTTTTTGCCGTTACTAGGGAGAAGGGCAAACATTAGAACATTCTGGTAGTAAAAGGGCATTGATATGGTTTTCTTTCTATGTA--TTTTCACATCATATAGTACTGCCTG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1488266 244 -   1547936 ATAGGTTCCTCACTGATCCTCTTCCTTTGAGGGATGAGTTTGACAACAAGCT--ATTAAAATGACATGACTCACCTACAACTA--GATCCTGTCATGAGGGATGGCAAGAGAGTTTTGCTTTATGTAAGGTGAAAAAGAATTTTTTT-CCCTTACTAGGGAGAAGGGCAAACATTGGAACATTCTGGTAGTAAAAGGGCACTGATATGGTTTTCTTTCTATACA--TTTTCCTGTCATATAGTACTGCCTG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            1083 242 +    168452 AGATATTCCTCACTGATCCTCTTCCTTTGATGGATGAAGTTGACAACAGCCTACATTATGATGACATGACTCATCTACAACTA--GATTCTGTCATGAGGGATGGTAAGGGAGTTTTGCTTGATGTGAGGTGAAAAGCAATTTTTTT-CTCCTACTTGGG---AGGGCAAGCATTGGAACATTCTGGTAGTAAAAGGGCGTTGATA--GTTTTCTTTCTATGTA-TTTTTCGCATCAGATAATGCTGCCCA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64623437 246 -  72162052 TTATGTTCCTCACCGATCCTCTTCCTTTGAGGGATACGTTAGACAACAGTCTGTATTATAATGACACGACTCACCTACAACTAACTGTTCTGTCAAGAGGGATGGCAAGGGAGTTTTGCTTTATGTGAGGTGAAAAATAATTTTTTT-TTCCTACTAGGGAAAGAGGCAAGCATTGGCACATTCTGATAGCAAAGGGGCATTGATA--GTTT-CTTTCTATATA-TTTTTCACATCACGTAGTCCTGCCTG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1039602 240 +   1314817 TTATGTTCCTCCCTGATCCTCTTCCTTT-AGGGATGCGTTAGACAACAGTCTGTATTATAATGACATGACTCACCTACAACTA----TTCTGTCAAGAGGGATGGCAAGGGAGTTTTGCTTTATGTGAGGTGAAAAATAA-TTTTTT-CTCCTACTAGGGATAGAGGCCAGCATTGGCACATTCTGATAGCAAAGGGGCATTGATA--GTTT-CTTTCTATATA-TTTTTCCCATTAGATAGTACTACCTG
i cebCap1.NW_016107851v1       C 0 C 0
s dasNov3.JH570393               1695116 219 -   2296528 ATATGCTCCTCACTGA---TCTTCCGGTGAGGAATGAGCCTGAAAATATTCTGTCTT----TTACAC-ATTCATGGTCA--TA--AGACTTGTTATTAGAAAGTCCCAAT--GTTTTGCTTGACATGCAGTGAAAAAGAA-TGATTT-CTCCTAATAGGGAGAGGGACAACTGATGGCACATTCTGGTGGCTTGAGTGAGTTTATA--AGGATAATACTATCTG--------------GTGATACTCCCTG
i dasNov3.JH570393             I 151 C 0

a score=1213838.000000
s hg38.chr14_GL000009v2_random     11132 183 +    201709 GCAGCCTGCCATACCTCCCCAGTGTTTATTCAGCTTCTCTC--TGAAT-----------------GTGGAT-----AAGCTCTTAAAGGAGTGATCTTTCCAGTGGTTCTTTCTGTGGGAGGTAAAATGGCAGGTGAATTTGGGGCTTGTT------ATACGTAGGCCAGAGCAAATAGCTACAACTAAGGAAACCACCCAGCACCTTACCCA
s panTro5.chr9                  41685310 183 + 116767853 GCACCCTGCCATACCTCCCCAGTGTTTATTCAGCTTCTCTC--TGAAT-----------------GTGGAT-----AAGCTCTTAAAGGAGTGATCTTTCCAGTGGTTCTTTCTGTGGGAGGCAAAATGGCAGGTGAATTTGGGCCTTGTT------ATACGTAGGCCAGAGCAAATATCTACAACTAAGGAAACCACCCAGCACCTTCCCCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96028821 183 - 114479721 GCAGCCTGCCATACCTCCCCAGTGTTTATTCAGCTTCTCTC--TGAAT-----------------GTGGAT-----AAGCTCTTAAAGGAGTGATCTTTCCAGTGGTTCTTTCTGTGGGAGGCAAAATGGCAGGTGAATTTGGGCCTTGTT------ATACGTAGGCCAGAGCAAATATCTACAACTAAGGAAACCACCCAGCACCTTCCCCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          106391 183 -    116138 GCAGCCTGCCACACCTCCCCAGTGTTTCTTCAGCCTCTCTC--TGAAT-----------------GTGGAT-----AAGCTCTTAAAGGAGTAATCTTTCCAGTGGTTCTTTCTGTGGGAAGTAAAATGACAGGTGAATTTGGGCCTTGTT------ATACGTAGGCCAGAGCAAATAGCTACAACTAAAGAAACCACCCAGCACTTTCCCCA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40791910 182 + 122973662 GCAGCCTGCCATACCTCCCCAGTGTTTCTTCAGCTTCTCTC--TGAAT-----------------GTGGAT-----AAGCTCTTAAAGGAGTGATCTTTCCAGTGGTTCTTTCTGTGGGAGGTAAAACGGCAGGTGAATTTGGGCCTTGAT------ATACGTAGGGCAGAGCAAATAGCTACAACTAAGGAAACCACCCA-CACCCTCCCCA
i nomLeu3.chr1a                I 192 C 0
s macFas5.chr13                111070998 183 - 111193037 GCAGCCTGCCACACCTCCCCAGTGTTCCTTAAACTTCTCTC--TGAAT-----------------ATGGAT-----AAGCTCTTAAAGGAGTAATGTTTCCAGTGGTTCTTTCTGTGGGAGGTAAAATGGCAGGTGAATTTGGGCCTTGTT------ATACATAGGGCAGAACAAATAGCTACAACTAAGGAAACCACCCAGCACCTTCCCCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          340990 199 +    434444 GCAGCCTGCCACACCTCCCCAGTGTTTCTTAAGCTTCTCTC--TGAATGTGAGGTGTGCCTCGTAGTGGAT-----AAGCTCTTAAAGGAGTGATATTTCCAGTGGTT-TTTCTGTGGGAGGTAAAATGGCAGGTGAATTTGGGCCTTGTT------ATACGTAGGGCAGAGCAAATAGCTACAACTATGTAAACCACCCAGCACCTTCCCCA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          388347 199 -    438202 GCAGCCTGCCACACCTCCCCAGTGTTTCTTAAGCTTCTCTC--TGAATGTGAGGTATAGTTCGTAGTGGAT-----ACGCTCTTAAAGGAGTGATATTTCCAGTGGTT-TTTCTGTGGGAGGTAAAATGGCAGGTGAATTTGGGCCTTGTT------ATACGTAGGGCAGAGCAAATAGCTACAACTATGTAAACCACCCAGCACCTTCCCCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66438081 199 +  90373283 GCAGCCTGCCACACCTCCCCAGTGTTTCTTAAGCTTCTCTC--TGAATGTGAGGTGTCGTTTGTAGTGGAT-----AAGCTCTTAAAGGAGTGATATTTCCAGTGGTT-TTTCTGTGGGTGGTACAATGGCAGGTGAATTTGGGCCTTGTT------ATACGTAGGGCAGAGCAAATAGCTACAACTGTGTAAACCATCCAGCACCTTCCCCA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1488510 199 -   1547936 GCAGCCTGCCACACCTCCCCAGTGTTTCTTAAGCTTCTCTC--TGAATGTGAGGTGTGGTTCGTAGTGGAT-----AAGCTCTTAAAGGAGTGGTATTTCCAGTGGTT-TTTCTGTGGGAGGTAAAATGGCAGGTGAATTTGGTCCTTGTT------ATACGTAGGGCAGAGCAAATAGCTACAACTATGTAAACCACCCAGCACCTTCCCCA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            1325 183 +    168452 GCAGCCGGCCACACCTCCCCAGTGTTTCTTAAGCTTCTCTC--TGAAT-----------------ATGGAT-----AAGCTCTTAAAGGAGTGATGTTTCCAGTGGTTCTTTCTGTGGGAGGTAAAATGGCAGGTGAATCTGGGCCTCGTT------ATACATAGGGCAGAGCAAATAGCTACAACTAAGGAAACCAACCAGCACCTTCCCCA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64623683 199 -  72162052 GCAGCCTGCCACCCCTCCCCAGTGCTTCTTAAGCTTCTCTC--TGAATGTGAGGTGTGGGTCAGAGTAAAT-----AAGCTATTAAAGGAGTGATATTTCC-GCGGTTCTTTCTGTGGGAGGTAAAATGGCAGGTGAATTTGGGCCTTGTT------AAACGTAGGGCAGAGCACCTAGCTACAACTAAGTAAATCACCCAGCACCTTCCCCA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1039842 199 +   1314817 GCAGCCTGCCACACCTCCCCAGTGTTTCTTAAGCTTCTCCC--TGAATGTGAGGTGTGGGTCAGAGTGAAT-----ATGCTATTAAAGGAGTGATATTTCC-GTGGTTCTTTCTGTAGGAGGTAAAATGGCAGGTGAATTTGGGCCTTGTT------AAACATAGGACAGAGCACATAGCTACAACTAAGTAAATCACCCAGCACCTTCTCCA
i cebCap1.NW_016107851v1       C 0 I 396
s dasNov3.JH570393               1695335 205 -   2296528 GCAGTTTGCTACAACCTC-------TTCTTAAGCTTCCATCAGTGATAATGAGATATGGTTCAGGATAGATCTTGAGAGCTTTTAAGTAAG-GATCTCTCCAGTAGCTCTTTCCCTGGGGGGTAAAATACCAGCTGAATTTGAACCTTCTTTGTACCACACATAGAGTAGAGAAAATGGCTAAAACTAACTGAGCTTACCAGTATCTTTCCCC
i dasNov3.JH570393             C 0 C 0

a score=2800.000000
s hg38.chr14_GL000009v2_random     11315 1 +    201709 G
s panTro5.chr9                  41685493 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029004 1 - 114479721 G
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          106574 1 -    116138 G
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40792092 1 + 122973662 G
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111071181 1 - 111193037 G
i macFas5.chr13                C 0 C 0
s colAng1.NW_012121088v1            1508 1 +    168452 G
i colAng1.NW_012121088v1       C 0 C 0
s dasNov3.JH570393               1695540 1 -   2296528 G
i dasNov3.JH570393             C 0 C 0
e cebCap1.NW_016107851v1         1040041 396 +   1314817 I
e saiBol1.JH378105              64623882 0 -  72162052 C
e manLeu1.NW_012105442v1         1488709 0 -   1547936 C
e chlSab2.chr2                  66438280 0 +  90373283 C
e cerAty1.NW_012002921v1          388546 0 -    438202 C
e macNem1.NW_012012823v1          341189 0 +    434444 C

a score=692914.000000
s hg38.chr14_GL000009v2_random     11316 107 +    201709 AAGAGTATTAGCCAGAGTAA-CACACTGATCTCTCTTGAGATCTTCTCCACTGGTGGCTGGAAAGTATTTGCAAGGATTCCTGTTTCTGGTCTGATTCCTATGTTTTG
s panTro5.chr9                  41685494 107 + 116767853 AAGAGTATTAGCCAGAGTAA-CACACTGATCTCTCTTGAGATCTTCTCCACTGGTGGCTGGAAAGTCTTTGCAAGGATTCCTGTTTCTGGTCTGATTCCTATGTTTTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029005 107 - 114479721 AAGAGTATTAGCCAGAGTAA-CACACTGATCTCTCTTGAGATCTTCTCCACTGGTGGCTGGAAAGTCTTTGCAAGGATTCCTGTTTCTGGTCTGAGTCCTATGTTTTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          106575 107 -    116138 AAGAGTATTAGCCAGAGTAA-CACACTGATCTCTCTTGAGGTCTTCTCCGCTGGTGGCTGGAAAGTATTTGCAAggattcttgtttctggtctgagtcctatgttttg
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40792093 105 + 122973662 AAGAATATTAGCCAGAGTAA-CACACTGATCTTTCTTGAGCTCTTCTCCACTGGTGGCTGGAAAGTC--TGCAAGGATTTCTGTTTCTGGTCTGATTCTTATGTTTTG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111071182 107 - 111193037 AAGAGTATTAGCCAGAGTAA-CACACCGATCTCTCTTCAGCTCTTCTCCACTGGTAGCTGGAAGGTCTTTGCAAGGATTCCTGTTTCTGGTCTGATTCCTGTGTTTTG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          341189 107 +    434444 AAGAGTAGTAGCCAGAGTAA-CACATTGATCTCTTTTGATCTCTTTTCCACTAGCAGCTGGAAAGTCTTTGCAAGGATTCCTGTTTCTGATCGGATTCCTATATTTTG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          388546 107 -    438202 AAGAATAGTAGCCAGAGTAA-CACATTGATCTCTTTTGATCTTTTTTCCACTAGCAGCTGGAAAGTCTTTGCAAGCATTCCTGTTTCTGATCGGATTCCTATATTTTG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66438280 107 +  90373283 AAGAGTAGTAGCCAGAGTAA-CATGTTGATCTCTTTTGATCTCTTTTCCACTAGCAGCTGGAAAGTCTTTGCAAGGATTCCTGTTTCTGATCGGATTCCTATGTTTGG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1488709 107 -   1547936 AAGAGTAGTAGCCAGAGTAA-CACATTGATCTCTTTTGATCTCTCTTCCACTAGCAGCTGGAAAGTCTTTGCAAGGATTCCTGTTTCTGATCGGATTCCTGTGTTTTG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            1509 107 +    168452 AAGCGTATTAGCCAGAGTAA-CACACCAATCTCTCTTCAGCTCTTTTCCACTGGCAGCTGGAAGGTCTTTGCAAGGATTCCTGTTTCTGGTCTGATTCCTATATTTTG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64623882 105 -  72162052 AAGAGTATTAGCCAGAGTAA-TACATTGATCTCTCTTGAGCTCTTCTCCATTGGCGGCTGGAAAGTCTTTGCAAGGATGCCTGTTTCTGGTCTGATT--TTTGTTTTG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1040437 107 +   1314817 AAGAGTATTAGCCAGAGTAA-CACATTGATCTCTCTTGAGCTCTTCTCCACTGGTGGCTGGAAAGTCTTTGCCAGGATGCCAGTTTCTGGTCTGATTCCTTTGTTTTG
i cebCap1.NW_016107851v1       I 396 C 0
s dasNov3.JH570393               1695541 105 -   2296528 GAGAAGCTTAGAGAGAGTAAGTACACTGATCTCTCCCGAGCTCCTCCCC-CTGGCAGCTGGAAAGGC-TTGCAAGGAC-CATGTCTCTGGTCTGTTGCCCATGCCTTG
i dasNov3.JH570393             C 0 I 83

a score=1293592.000000
s hg38.chr14_GL000009v2_random     11423 221 +    201709 TTGGTTTCTGGCG--ATAGCATGTTTTATTCTAAACTAAACAGTTTG-ATCTGAAGAGCTAGAGAGGCTGTGTGGTGTTATAACAAAATAAGTGcagtaactacaccttaactgtgggagatacatttcaagacccccagtgcatgcatgaaaccatgaatattactgaatcacaagctgtttttccctatacatacatatctatgacaaagtttaatttataa
s panTro5.chr9                  41685601 221 + 116767853 TTGGTTTCTGGTG--ATAGTGCATTTTATTCTAAACTAAACAGTTTG-AACTGAAGAACTAGAGAGGCTGTGTTGTGTTATAACAAAATAAGTGcagtagctacaccttaactgtgggagatacattccaagacccccagtggaatcatgaaaccatgaatagtactgaatcacaagctgtttttccctatacatacatatctatgacaaagtttaatttataa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029112 221 - 114479721 CTGGTTTCTGGTG--ATAGCGTGTTTTATTCTAAACTAAACAGTTTG-AACTGAAGAACTAGAGAGGCTGTATTGTGTTATAACAAAATAAGTGcagtagctcccccttaactgtgggagatacattccaagacccccagtggatgcatgaaaccatgaatagtactaaatcacaaactgtttttccctatacatacatatctatgataaattttaatttataa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          106682 220 -    116138 ctggtttctggtG--ATAGCGTGTTTTATTCTAAACT-AACAGTTTG-AACTGAAGAACTAGAGAGGCTGTATTGTGTTATAACAAAATAAGTGcagtagctcccccttaactgtgggagatacattccaagacccccagtggatgcatgaaaccatgaatagtactgaatcacaaactgtttttccctatacatacatatctatgataaattttaatttataa
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40792198 220 + 122973662 CTGGCTTCTGGTG--ACAGGGTGTTTTATCCTAAACTGAACAGTTTG-AACTGAAGAGCTAGAGAGGCTGTGTTGTGTCATAACAAAATAAGTGcagtagttcctccttaactgtgggagatacattccaagacccccagtggatgcaggaaaccacgaatagtactgaatcacaaactgttttttcctatacatacatatc-atgataaagtttaatttataa
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111071289 223 - 111193037 CTGGCTTCTGGTGATATAGGGTGTTTTATCCTAAACTGAACAGTTTG-AACTGAAGAGCTAGAGAGGCTGTGTTGTGCTATAACAAAATAAGTGcagtagttcccccttaactgtgggaaatacattccaagactcccagtggatgcatggaaccgcgaatagtactgaatcacaaactgttttttcctatgcatacctatctatgataaagtttaatttataa
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          341296 221 +    434444 CTGGCTTCTGGTG--ATAGGGTGTTTTATCCTAAACTGAACAGTTTG-AACTGAAGAGCTAGAGAGGCTGTGTTGTGTTATAACAAAATAAGTAcagtagttcccccttaactgtaggagatacattccaacgcccccagtggatgcatggaactacgagtagtactgaatcacaaactgttttttcctacacatatgtatctaggataaactttaatttataa
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          388653 221 -    438202 CTGGCTTCTGGTG--ATAGGGTGTTTTATCCTAAACTGAACAGTTTG-AACTGAAGAGCTAGAGAGGCTGTGTTGTGTTACAACAAAATAAGTAcagtagttcgcccttaactgtaggagatacattccaacgcccccagtggatgcatggaactacgaatagtactgaatcacaaactgttttttcctacacatatgtatctaggataaactttaatttataa
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66438387 221 +  90373283 CTGGCTTCTGATG--ATAGGGCGTTTTATCCTAAACTGAACAGTTTG-AGCTGAAGAGATAGAGAGGCTGTGTTGTGTTATAACAAAATAAATAcagtagttcccccttaactgtaggagatacattcccacgcccccagtggatgcatggaactatgaatagtactgaaccacaaactgttttttgctatacatacatatctaggataaactttaatttataa
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1488816 221 -   1547936 CTGGCTTCTGGTG--ATAGGGTGTTTTATCCTAAACTGAACAGTTTG-AACTGAAGAGCTAGAGAGGCTGTGTTGTGTTACAACAAAATAAGTAcagtagtttccccttaactgtaggagatacatttcaacgcccccagtggatgcatggaactacgaatagtactgaatcacaaactgttttttcctacacatatgtacctaggataaactttaatttataa
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            1616 221 +    168452 CTGGCTTCTGGTG--ATAGGGTGTTTTATTCTAAACTGAACAGTTTG-AACTGAAGAGCTGGAGAGGTTGTGTTGTGCTGTAACAAATTAAGTGcagtagttcccccttaactgtgggagatacattccaagacccccagtggatgcatggaaccacgaatagtactgaatcacaaaccggtttttcctatacatacatatggatgataaagtttaatttataa
i colAng1.NW_012121088v1       C 0 M 6091
s saiBol1.JH378105              64623987 216 -  72162052 CTGGCTTCTGGTG--A----GTGTTTTATCCTAAGCTGAACAGTTTTAAACTGAAGAGCTAGAGAGGCTGTGTTGTGTT-CAACAAAGTAAGTGcagtagctccccctgaactgtgggagatacattccaa-acccccagtgaatgcctgaaaccacaaatagtactgaatcacacactatattttcctatacatgcttatctgtgataaagtttaatttataa
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1040544 208 +   1314817 CTGGCTTC-------------TGTTTTATCCTAAACTGAACAGTTTT-AACTGAAGAGCTAGAGAGGCTGTGTTGTGTT-CAACAAAATAAGTGcagcagctccaccttaactgtgggagatacattccaa-accccccgtgaatgcctgaaaccacaaatagtactgaatcacacactgtattttcccatacatgcttatctgtgataaagtttaatttataa
i cebCap1.NW_016107851v1       C 0 C 0
e dasNov3.JH570393               1695646  83 -   2296528 I

a score=22682.000000
s hg38.chr14_GL000009v2_random     11644 4 +    201709 atta
s panTro5.chr9                  41685822 4 + 116767853 atta
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029333 4 - 114479721 atta
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          106902 4 -    116138 atta
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40792418 4 + 122973662 atta
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111071512 4 - 111193037 atta
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          341517 4 +    434444 atta
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          388874 4 -    438202 atCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66438608 4 +  90373283 atta
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489037 4 -   1547936 atta
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64624203 4 -  72162052 atta
i saiBol1.JH378105             C 0 I 1164
s cebCap1.NW_016107851v1         1040752 4 +   1314817 atta
i cebCap1.NW_016107851v1       C 0 I 1215
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1695646 83 -   2296528 I

a score=12507.000000
s hg38.chr14_GL000009v2_random     11648 5 +    201709 AATTA
s panTro5.chr9                  41685826 5 + 116767853 AATTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029337 5 - 114479721 AATTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          106906 5 -    116138 AATTA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40792422 5 + 122973662 AATTg
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111071516 5 - 111193037 AATTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          341521 5 +    434444 AAATA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          388878 5 -    438202 AAATA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66438612 5 +  90373283 AAATA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489041 5 -   1547936 AAATA
i manLeu1.NW_012105442v1       C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1695646 83 -   2296528 I
e cebCap1.NW_016107851v1         1040756 1215 +   1314817 I
e saiBol1.JH378105              64624207 1164 -  72162052 I

a score=5005.000000
s hg38.chr14_GL000009v2_random     11653 1 +    201709 A
s panTro5.chr9                  41685831 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029342 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          106911 1 -    116138 A
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40792427 1 + 122973662 a
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111071521 1 - 111193037 A
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          341526 1 +    434444 A
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          388883 1 -    438202 A
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66438617 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489046 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64625371 1 -  72162052 a
i saiBol1.JH378105             I 1164 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1695646 83 -   2296528 I
e cebCap1.NW_016107851v1         1040756 1215 +   1314817 I

a score=186004.000000
s hg38.chr14_GL000009v2_random     11654 37 +    201709 atctgatgttatctgtagataggg--tgtgagaattgaa
s panTro5.chr9                  41685832 37 + 116767853 atctgatgttatctgtagataggg--tgtgagaattgaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029343 37 - 114479721 atctgatgttatctgtagataggg--tgtgagaattgaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          106912 37 -    116138 atctgatgttatctgtagataggt--tgtgagaattgaa
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40792428 37 + 122973662 atctgatgttatctgcagataggg--tgtgagaattgca
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111071522 37 - 111193037 ATCTGATTGTGTCTGCCGATAGGG--TGTGAGAATTGAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          341527 37 +    434444 atctgatgttatctgcagatagag--tgtgaaaattgaa
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          388884 37 -    438202 atctgatgttatctgcagatagag--tgtgaaaattgaa
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66438618 37 +  90373283 atctgatgttatctgcagatagag--tgtgagaattgaa
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489047 37 -   1547936 atctgatgttgtctgcagatagag--tgtgaaaattgaa
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64625372 37 -  72162052 atctgatgttatctgcagatagag--tgtgagaattgaa
i saiBol1.JH378105             C 0 I 16
s otoGar3.GL873538              19633342 39 -  27850971 atctgacgccatctctagatagaaactatggtaattgaa
i otoGar3.GL873538             N 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1695646 83 -   2296528 I
e cebCap1.NW_016107851v1         1040756 1215 +   1314817 I

a score=538159.000000
s hg38.chr14_GL000009v2_random     11691  92 +    201709 --ttgtgtcatcagcaggaatgattgcttgtttgtt-----ggt-ggggaa----aaactctccacacatttggttacagaagccttctttgttgatgattgtt
s panTro5.chr9                  41685869  92 + 116767853 --ttgtgtcatcagcaggaatgattgcttgtttgtt-----ggt-ggggaa----aaactctccacacatttggtcacagaagccttctttgttgatgattgtt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029380  92 - 114479721 --ttgtgtcatcagcagaaatgattacttacttgtt-----ggt-ggggaa----aaactctccacacatttggtcacagaagccttctttgttgatgattgtt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          106949  92 -    116138 --ttgtgtcatcagcaggaatgattgcttacttgtt-----ggt-ggggaa----aaactctccacacatttggtcacagaagccttctttgttgatgattgtt
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40792465  93 + 122973662 --ttgtgtcatcagcaggaatgattgcatgcttgtt-----ggtgggggaa----aaactctccacatatttggtgacagaagccttctttgttgatgattgtt
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111071559  88 - 111193037 --tggtgtcatcagcaggaatgatt-tttgcttgt--------t-ggggaa----aatctctccacacatgtggtcacagaagccttctttgtagatgattgtt
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          341564  92 +    434444 --ttgtgtcatcagcagaaatgattgcttgtttgtt-----ggt-ggggaa----aaactctccacacatttggtcacagaagccttctctgttgatgattgtt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          388921  92 -    438202 --ttgtgtcatcagcagaaatgattgcttgcttgtt-----ggt-ggggaa----aaactctccacacatttggtcacagaagccttctctgttgatgattgtt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66438655  93 +  90373283 --ttgtgtcatcagcagaaatgattgcttgcttgtt-----ggtgggggaa----aaactctccacacatttggtcacagaagccttctttggtgatgattgtt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489084  92 -   1547936 --ttgtgtcatcagcagaaatgattgcttgcttgtt-----ggt-ggggaa----aaactctccacacatttggtcacagaagccttctctgttgatgattgtt
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64625425  92 -  72162052 --ttgtgtcatctgcagaaatgattgcttgttcgtt-----ggt-ggggaa----aaactctccacatgtttggtcacaggagccttctttgttgatgattgtt
i saiBol1.JH378105             I 16 C 0
s cebCap1.NW_016107851v1         1041971  92 +   1314817 --ttgtgtcatctgcagaaatgactgcttgtttttt-----ggt-ggggaa----aaactctccacatgtttggtcacaggagccttctttgttgatgattgtt
i cebCap1.NW_016107851v1       I 1215 C 0
s otoGar3.GL873538              19633381 103 -  27850971 atagaggacgcctgcagaattgattgcttgcttattcctggagt-gggggagcggggactccatacacatttggtcacagaagtcttctgtgttgactgttgtt
i otoGar3.GL873538             C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1695646  83 -   2296528 I

a score=288534.000000
s hg38.chr14_GL000009v2_random     11783 72 +    201709 gctgtggtgtgacagcagagaaa-aaCGTGTCAAGTATGTC-TTTCTGCGCATATAGTGGATAAGG-GGTACTAG
s panTro5.chr9                  41685961 72 + 116767853 gctgtggtgtgacagcagagaaa-aaCTTGTCAAGTATGTC-TTTCTGCACATAAAGTGGATAAGG-GGTACTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029472 72 - 114479721 gctgtggtgtgacagcagagaaa-aaCTTGTCAAGTATGTC-TTTCTGTGCATATAGTGGATAAGG-GGTACTAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107041 72 -    116138 gctgtggtgtgacagcagagaaa-aaCTTGTCAAGTATGTC-TTTCTGCGCATATAGTGGATAAGG-GGTACTAT
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40792558 72 + 122973662 tctgtggtgtgagagcagagaaa-aacatgtcaagtacgtc-tttccgCACATATAGTGGATAAGG-GGTACTAC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111071647 72 - 111193037 gctgtggcgtgagggcagagaaa-aCCCTGTCAAGTATGTC-TTTCCGCACATATAGTGGATAACG-GGTACTAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          341656 72 +    434444 gctgtggcgtgacagcagacaaa-aCCATGTCAAGTATGTC-TTTCTGCACATATAGTGGATAAGG-GGTACTAC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389013 72 -    438202 gctgtggcgtgacagcagacaaa-aCCATGTCAAGTATGTC-TTTCTGCACATATAGTGGATAAGG-GGTACTAC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66438748 72 +  90373283 gctgtggcgtgagggcagagaaa-aCTCTGTCAAGTATGTC-TTTCCTCTCATATAGTGGATAAAG-GGTACTAC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489176 72 -   1547936 gctgtggcgtgacagcagacaaa-aCCATGTCAAGTATGTC-TTTCTGCACATATAGTGGATAAGG-GGTACTAC
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64625517 57 -  72162052 gctgtggcatgagagctgagaaa-aacatgtcaagtgtgtcttttccacacaTAT-----------------TAC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1042063 57 +   1314817 gctgtggcatgagagcagagaaa-aacatgtcaagggtgtcttttctacacaTGT-----------------TAC
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19633484 75 -  27850971 tcccctctgagatcatagggaaaGACCATGTTCACTTTATTTTTTATACACACATAGTGGGTAAAGAGGGACTAC
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1695729 28 -   2296528 GCTGTGTTGTGTCACAACAAAAT-ATTCT----------------------------------------------
i dasNov3.JH570393             I 83 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=1923201.000000
s hg38.chr14_GL000009v2_random     11855 304 +    201709 TGTATACTCTGTTGTAATGGCCCCTCATA-TTTTGGTCCAGAAA--TCATGCTCTTTGA------CACTGTTGACTCATCACACCTGTTCTGCTAACAATACCATTTTTACTCAATCTCATAGGCTTTGGCTAGGA---TGAC-----TTGTATACTTCAGTTCACTTGTAGATACCAAATTTTAATAA-----AT-TTATTCTTCT-TTGCATCTAATAAATACAGAGGGAAG--------AGTTCTTACTGCATTAATTACCTACCAATACTTATAATGAATGTTAATTCTAATA-AGTTCCCAGGCATGCTCCCAAAGGAATGCTTTGTAACAA
s panTro5.chr9                  41686033 304 + 116767853 TGTATACTCTGCTGTAATGGCCCCTCATA-TTTTGGTCCAGAAA--TCATGCTCTTTGA------CACTGTTGACTCATCACACCTGTTCTGCTAACAATACCATTTTTATCCAATCTCATAGGGTTTGGCTAGGA---TGAC-----TTGTATACTGCAGTTCACTTGTAGATACCAAATTTTAATAA-----AT-TTATTCTTCT-TTGCATCTAATAAATACAAAGGGAAG--------AGTTCTTACTGCATTAATTACCTATCAACAAGTATGATGAATGTTAATTCTAATA-AGTTCGCAGGCATGCTCCCAAAGGAATGCTTTGGAACAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029544 304 - 114479721 TGTATACTCTGTTTTAATGGCCCCTCATA-TTTTGTTCCAGAAA--TCATGCTCTTTGA------CACTGTTGACTCATCATACCTGTTCTGCTAACAATACCATTTTTACTCAATCTCATAGGGTTTGGCTAGGA---TGAC-----TTGTATACTGCAGTTCACTTGTAGATACCAAGTTTTAATAA-----AT-GTATTCTTCT-TTGCATCTAATAAATACAAAGGGAAG--------AGTTCTTACTGCATTAATTACCTACCAATAAGTATGATGAATGTTAATTCTAATA-AGGTCCCAGGCATGCTCCCAAAGGAATGCTCTGTAACAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107113 303 -    116138 TGTATACTCTGTTTTAATGG-CCCTCATA-TTTTGTTCCAGAAA--TCATGCTCTTTGA------CACTGTTGACTTATCACACCTGTTCTGCTAACAATACCATTTTTACTCAATCTCATAGGGTTTGGCTAGGA---TGAC-----TTGTATACAGCAGTTCACTTGTAGATACCAAATTTTAATAA-----AT-TTATTCTTCT-TTGCATCTAATAAATACAAAGGGAAG--------AGTTCTTACTGCATTAATTACCTACCAATAAGTATGATGAATGTTAATTCTAATA-AGGTCCCAGGCATGCTCCCAAAGGAATGCTTTGTGACAA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40792630 304 + 122973662 TGTATATTCTGTTTTAACTGCTCCTCATA-TTTTGGTCCACAAA--TCATGCTCTTTGA------CACTGTTGACTAATCACACCTGTTCTGCTAACAATACCATTTTTACCCAATCTCATAGAGTTTGGCTAGGA---TGTC-----TTGTATACTGCAGCTCACTTGTAAATACCAAATTTTAATAA-----AT-TTATTCTTCT-TTGCATCTAATAAATACAAAGGGAAG--------AGTTCTTACTGCATTAATTACCTACCAATAGGTATAATTAATGTTAATTCTAATA-AGGTCTCAGGCATGCTCCCAAAGGAATGCTTTGTAACAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111071719 301 - 111193037 TGAATACTCTGTTTTAACGGCCTCTCATA-TTTTGGTCCAGAAA--TCATGCTCTTTGA------CACTGTTGACTCATCACACCTGTTCTGCTAACAATACCATTTTTGCTCAATCTCATAGGGTTTGGCTAAAA---TGAC-----TTGTGTACTGCAGTTCACTTGTAGATACTACGTTTTTATAA-----AT-TTATTCTTTT----CATCTAATAAATACAAAGGGAAG--------AGTTCTTACTGCATTAATTACTTACCAATAGGTATAATTAATGTTAATTCTAGTA-AAGTCCCAGGCACGCTCCCAAAGGAATGCTTTATAACAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          341728 308 +    434444 TGTATACTCTGTTTTAACTGCCCCTCATG-TTTTGGTCCAGATA--TCATGCTCTTTGA------CACTGTTGACTCATCACACCTGTTCCGCTAACAATAACATTTTTACTCAGTCTCATAGGGTTTGACTAGGA---TGAC-----TTGTATACTGCAGTTTACTTGTAGATACCAAATTTTAATAA-----AT-TTATTCTTCT-TTGCTTTTAATAAATACAAAGGGAAG----TAACAGTTCTTAATGCATTAATTACCTACCAATAGGTATAATTAATGTTAATTCTAATA-AGGTCCCAGGTATGCTCCCAAAGGAATTCTTTGTAACAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389085 308 -    438202 TGTATACTCTGTTTTAACTGCCCCTCATG-TTTTGGTCCAGAAA--TCATGCTCTTTGA------CACTGTTGACTCATCACACCTGTTCCGCTAACAATAACATTTTTACTCAGTCTCATAGGGTTTGACTAGGA---TGAC-----TTGTATACTGCAGTTTACTTGTAGATACCAAATTTTAATAA-----AT-TTATTCTTCT-TTGCTTTTAATAAGTACAAAGGGAAG----TAACAGTTCTTAATGCATTAATTACCTACCAATAGGTATAATTAATGTTAATTCTAATA-AGGTCCCAGGTATGCTCCCAAAGGAATTCTTTGTAACAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66438820 308 +  90373283 TGTATACTCTGTTTTAACTGCCCCTCATG-TTTTGGTTCAGATA--TCATGCTCTCTGA------CACTGTTGACTCATCACACGTGTTCTGCTAACAATAACATTTTTACCCAATCTTATAGGGTTTGACTAGGA---TGAC-----TTGTATACTGCGGTTTACTTGTAGATACCAAATTTTAATAC-----AT-TTATTCTTCT-TTGCTTTTAATAAATACAAAGGGAAG----TAACAGTTCTGAATGCATTAATTACCTACCAATAGGTATAATTAATGTTAATTCTAATA-AGGTCCCAGGTATGCTTCCAAAGGAATTCTTTGTAACAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489248 305 -   1547936 TGTATACTCTGTTTTAACTGCCCCTCATG-TTTTGGTCCAGAAA--TCATGCTCTTTGA------CACTGTTGACTCATCACACCTGTTCCGCTAACAATAACATTTTTACTCAGTCTCATAGGGTTTGACTAGGA---TGAC-----TTGTATACTGCAGTTTACTTGTAGATACCAAATTTTGATAA-----AT-TTA---TTCT-TTGCTTTTAATAAATATAAAGGGAAG----TAACAGTTCTTAATGCATTAATTACCTACCAATAGGTATAATTAATGTTAATTCTAATA-AGGTCCCAGGTATGCTCCCAAAGGAATTCTTTGTAACAA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64625574 308 -  72162052 TGTATACTCTATTTTAACTG-CCCTCATA-TTTTGGTCCAGAAA--TCATGCTCTTTGA------CACTGTTCACGCATCACACCTGTTCCGCAAAC---ATCATTTTTAGTCAGTCTCATAGGGTTTGGCTAGGA---TGAT-----TTGTATACTGCAGTTCACTTGTAGATATTAAATTTTGATAA-----AT-GTATTCTTTT-TTGCACCTAATAAATACAAACCAAATGAATTAAGAGTTCTTACTGCATTAATTACCTACCAATAGGTTAAATTAATATTATTTCTAATA-AGGTCCCAGGTATGCTCCCAAAGGAATGATTTGTAGCAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1042120 311 +   1314817 TGTATATTCTATTTTAACTG-CCCTCATA-TTTTGGTCCAGAAA--TCATGCTCTTTGA------CACTCTTCACGCATCACACCTGTTCTGCTAACAATACCATTTTTAGTCAATCTCGTAGGGTTTGGCTAGGA---TGAC-----TTATATACTGCAGTTCACTTGTAGATATCAAATTTTGATAA-----AT-GTATTCTTCT-TTGCATCTAATAAATACAAAGCAAATGAGTTAAGAATTCTTACTGCATTAATTACCTACCAATAGGTTAAATTAATAGTATTTCTAATA-AGGTCCCAGGTATGCTCCCAAAGGAATGATATGTAACAA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19633559 314 -  27850971 CGTATATTCTGTTCTAGTTCCTCCTAGTC-CATAAGTCCAGAAG--TAATGCTCTGTGT------CACTTCCCACATATGATACGAATTCTCTTAATGATATCATTTTCTGTCACTGTGATAGAGTTTGGTTAGAACTGTGAT---TATTACACACAGCAGTTTACTTG----TATTCAATTTTTGTAA-----ATCCCACTACTCG-TTGCATTTGATGAATACAAAGGAGGAGACTTAGGAGCTCTTCATGCATTAATTGCCTGCCAATAA-TATAATTAATGTTAATTCTAGTACAGCCTCCAGGTAAGGTCCCAAAGGCATACTCCATAAGAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79078666 321 -  85426708 TGTATAGTCTGTTTTAACTGCTCCTAGTAGTGGAAGTCCAGAAAACTCATACTGTTTAAGTTTGCCATTGTCACTTTATGATAATGACTCTGCTAATGATACCATTTCCTGTCAGTCTCATGGGGTTTGGTTACAA---TAATGGTCATTAGAAAC----ATTCACTTGTAGGTATCACATTCTGATAA-----CTAGAATTCTTTTCTTGAATTTGGTAAATATAGAGGAGAA--AATGAGATTTCTTAATGCATTAACTGCCTACCAATAG-TACAATTAATATCCACTGTGGTGTGGTTTCCAGGTATGGT-CCAAAGGAATACTTTTCAACAA
i canFam3.chr2                 N 0 C 0
s dasNov3.JH570393               1695757 323 -   2296528 ----TACTCTCTTCTAACTGCCTCTAGTGGCAGAAATTCAGAAAAATCATGCTATTTAAATTTAATGCTGTCAGCTTGTTATAATGATATTGCTAATGATAG-ATTTTCTGTCAGTCTGAAAGGGTTAGGTTAAGA---TTATGGAAATTGTAAAC---AATTTACTTGCAAGTATCAGACTTTGATAATTCACAC-TTTCTTTTCC-TTGCGTTTGATAAATACAAAGGAAGGAGTGCAATAGTTTTTAATGCACCAGTTGCTTACCAATAG-TATAATTAATAGTCACTCTAGTATAGTGTCCAGGTGTGGTCCCAAAAGAATACTTTGTAACAA
i dasNov3.JH570393             C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=16124.000000
s hg38.chr14_GL000009v2_random     12159 3 +    201709 AAC
s panTro5.chr9                  41686337 3 + 116767853 AGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029848 3 - 114479721 AGC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107416 3 -    116138 AGC
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40792934 3 + 122973662 AGC
i nomLeu3.chr1a                C 0 I 410
s macFas5.chr13                111072020 3 - 111193037 AGC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342036 3 +    434444 AGC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389393 3 -    438202 AGC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439128 3 +  90373283 AGC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489553 3 -   1547936 AGC
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64625882 3 -  72162052 ATC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1042431 3 +   1314817 AGC
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19633873 3 -  27850971 ACC
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79078987 3 -  85426708 GTC
i canFam3.chr2                 C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1696080 0 -   2296528 C

a score=26896.000000
s hg38.chr14_GL000009v2_random     12162 4 +    201709 GTCA
s panTro5.chr9                  41686340 4 + 116767853 ATCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029851 4 - 114479721 ATCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107419 4 -    116138 ATCA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40793347 4 + 122973662 gtca
i nomLeu3.chr1a                I 410 C 0
s macFas5.chr13                111072023 4 - 111193037 ATCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342039 4 +    434444 ATCA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389396 4 -    438202 ATCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439131 4 +  90373283 ATCA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489556 4 -   1547936 ATCA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64625885 4 -  72162052 GTCA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1042434 4 +   1314817 GTCA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19633876 4 -  27850971 CTCA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79078990 4 -  85426708 ATCA
i canFam3.chr2                 C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1696080 0 -   2296528 C

a score=7800.000000
s hg38.chr14_GL000009v2_random     12166 1 +    201709 G
s panTro5.chr9                  41686344 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029855 1 - 114479721 G
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107423 1 -    116138 G
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40793351 1 + 122973662 g
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072027 1 - 111193037 G
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342043 1 +    434444 G
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389400 1 -    438202 G
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439135 1 +  90373283 G
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489560 1 -   1547936 G
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64625889 1 -  72162052 G
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1042438 1 +   1314817 G
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19633880 1 -  27850971 G
i otoGar3.GL873538             C 0 C 0
e canFam3.chr2                  79078994 0 -  85426708 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1696080 0 -   2296528 C

a score=88621.000000
s hg38.chr14_GL000009v2_random     12167 23 +    201709 TCTTATGCTTTaaaaaaccaaa------c
s panTro5.chr9                  41686345 23 + 116767853 TCTTATGCTTTAaaaaaccaaa------c
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029856 23 - 114479721 TCTTATGCTTTAaaaaaccaaa------c
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107424 23 -    116138 TCTTATGCTTTaaaaaaccaaa------c
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40793352 23 + 122973662 tcttatgctttaaaaaaccaaa------c
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072028 29 - 111193037 TCTTATGCTTaaaaaaaagaaaaaaaagc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342044 23 +    434444 TCATGTGCTTTACAaaaacaaa------c
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389401 23 -    438202 TCATGTGCTTTACAaaaacaaa------c
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439136 23 +  90373283 TCATGTGCTTTacaaaaacaaa------c
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489561 23 -   1547936 TCATGTGCTTTacaaaaacaaa------c
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64625890 23 -  72162052 TCCCATGATTAAAAAAAAAAAA------A
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1042439 23 +   1314817 TCTCATGATTaaaaaaaaaaaa------c
i cebCap1.NW_016107851v1       C 0 I 8
e canFam3.chr2                  79078994  0 -  85426708 C
e otoGar3.GL873538              19633881  0 -  27850971 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1696080  0 -   2296528 C

a score=50334.000000
s hg38.chr14_GL000009v2_random     12190 23 +    201709 caaacc--------a-------a---aacaacaacaacaac
s panTro5.chr9                  41686368 29 + 116767853 caaacc--aaaacaa-------a---aacaacaacaacaac
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029879 32 - 114479721 caaacc--aaaacaa-------aaacaacaacaacaacaac
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107447 26 -    116138 caaacc--aaaacaa-------a------aacaacaacaac
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40793375 25 + 122973662 caaa-c--aaaaCAA-------A------AACAACAACAAC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072057 32 - 111193037 caaaac--aaaacaaatacaaca-------acaacaaaaac
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342067 25 +    434444 caaacc--aaaacaa-------c-------acaacaacaaC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389424 25 -    438202 caaacc--aaaacaa-------c-------acaacaacaaC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439159 29 +  90373283 caaaac--aaaacaa-------c---aacaacaacaacaac
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489584 25 -   1547936 caaacc--caaacaa-------c-------acaacaacaac
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64625913 14 -  72162052 -AAAACGTAAAACAA--------------------------
i saiBol1.JH378105             C 0 C 0
e canFam3.chr2                  79078994  0 -  85426708 C
e otoGar3.GL873538              19633881  0 -  27850971 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1696080  0 -   2296528 C
e cebCap1.NW_016107851v1         1042462  8 +   1314817 I

a score=324541.000000
s hg38.chr14_GL000009v2_random     12213 77 +    201709 aaaaaacaGGATCTAAAGCATACACACAAGTGTGCAC-AA-Ttttttt-atgaag--gtagagtcttactatgtttcccaag
s panTro5.chr9                  41686397 77 + 116767853 aacaaacaggatctaaatcatacacacaaTTGTGCAC-AA-Ttttttt-atgaag--gtagagttttactatgtttcccaag
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029911 77 - 114479721 aacaaaCAGGATCTAAAGCATACACACAAGTGTACAC-AA-Ttttttt-atgaag--gtagagtcttactatgtttcccaag
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107473 77 -    116138 aaaaaacaGGATCTAAAGCATACACACAAGTGTACAC-AA-Ttttttt-atgaag--gtagagtcttactatgtttcccaag
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40793400 75 + 122973662 A--AAAGAGGATCTAAAGCATACACACAAGTGTGCAC-AA-ttttttt-atgaag--gtagagtcttactatgtttcccaag
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072089 70 - 111193037 a-------gcatctaaagcatacacaaaaGTGTGCCC-AA-TTGtttt-atgatg--gtagagtcttactatgtttcctgag
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342092 71 +    434444 A-------GGATCTAAAGCATACACACAAGTGTGCAC-AA-tttttttaatgaag--gtagagtcttgctatgtttcccaag
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389449 74 -    438202 A-------GGATCTAAAGCATACACACAAGTGTGCACAAA-tttttttaatgaaggtgtagagtcttgctatgtttcccaag
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439188 71 +  90373283 a-------TGATCTAAAGCATACACACAAGTGTGCAC-AG-tttttttaatgaag--gtagagtcttgctatgtttcccaag
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489609 71 -   1547936 a-------ggatctaaagcatacacacaaGTGTGCAC-AA-tttttttaatgaag--gtagagtcttgctatgtttcccaag
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64625927 74 -  72162052 -AAAAACATGGTCTAAAGCATGAACACAAGTGTGCAT-AA-ttttttt-atgaag--atagaatcttgc--tgttttccaag
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1042470 76 +   1314817 aaaaaaCATGGTCTAAAGCATGCACAAAAGTGTGCAT-AAtttttttt-atgaag--atagaatcttgc--tgttttccaag
i cebCap1.NW_016107851v1       I 8 C 0
e canFam3.chr2                  79078994  0 -  85426708 C
e otoGar3.GL873538              19633881  0 -  27850971 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1696080  0 -   2296528 C

a score=41041.000000
s hg38.chr14_GL000009v2_random     12290 6 +    201709 ctggtc
s panTro5.chr9                  41686474 6 + 116767853 ctggtc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029988 6 - 114479721 ctggtc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107550 6 -    116138 ttggtc
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40793475 6 + 122973662 ctggtc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072159 6 - 111193037 ctggtc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342163 6 +    434444 ctggtc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389523 6 -    438202 ctggtc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439259 6 +  90373283 ctggtc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489680 6 -   1547936 ctggtc
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64626001 6 -  72162052 ctggtc
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1042546 6 +   1314817 ctggtc
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79078994 6 -  85426708 TCGGTC
i canFam3.chr2                 C 0 C 0
e otoGar3.GL873538              19633881 0 -  27850971 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1696080 0 -   2296528 C

a score=380456.000000
s hg38.chr14_GL000009v2_random     12296 79 +    201709 tcaaacttctgggctcctcaagtgatcctcctgcctcatcctcccaagtagtttggattagaggcatgcatcactgtgc
s panTro5.chr9                  41686480 79 + 116767853 tcaaacttctgggctcctcaagtgatcctcctgcctcatcctctcaagtagtttggattagaggcatgcatcactgtgc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96029994 79 - 114479721 tcaaacttctgggctcctcaagtgatcctcctgcctcatcctctcaagtagtttggattagaggcatgcatcactgtgc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107556 79 -    116138 tcaaacttctgggctcctcaagtgatcctcctgcctcatcctctcaagtagtttggattagaggcatgcatcactgtgc
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40793481 79 + 122973662 tcaaacttctgggttcctcaagtgatcctcctgcctcatcctcccaagtagtttgaattacaggcatgcatcactgtgc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072165 79 - 111193037 tcaaacttctgggttcctcaagtgatcctcctgcctcatcctcccaaatactttagagtacaggcctgcagtgctgtgc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342169 79 +    434444 tcaaacttctgggttcctcaagtgatcctcctgcctcagcctcccaagtagttttgattacaggcatgtatcactgtgc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389529 79 -    438202 tcaaacttctgggttcctcaagtgatcctcctgcctcagcctcccaagtagttttgattataggcatgcatcactgtgc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439265 79 +  90373283 tcaaacttctgggttcctcaagtgatcctcctgcctcagcctcccaagtagttttgattacaggcatgcgtcactgtgc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489686 79 -   1547936 tcaaacttctgggttcctcaagtgatcctcctgcctcagcctcccaagtagttttgattacaggcatgcatcactgtgc
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64626007 79 -  72162052 ttaaacttctgagttcctcaggtgatcctcctgccccagcctcccaagtagttgggattacaggcatgcatcaatgtgc
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1042552 79 +   1314817 tcaaacttctggggtcctcaagggatcctcctgcctcagcctcccaagtagttgggattacaggcatgcatttctgtgc
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79079000  8 -  85426708 TTACACTT-----------------------------------------------------------------------
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1696080 12 -   2296528 TCAAA---------------------------GTCTCAT----------------------------------------
i dasNov3.JH570393             C 0 C 0
e otoGar3.GL873538              19633881  0 -  27850971 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=1430483.000000
s hg38.chr14_GL000009v2_random     12375 232 +    201709 ATTCTTATGATTTTAATATTCTGTAC-----ATT--T--ATTATTGATTTAAAATGCATTTTACC-TTTTTCTTTAATAGATGTTGGAATTTCTGATGAA---TCTGCAGTCAGGTAAGA-TTTCATAGATTT---AAAAAA---TTATGTTAACTAAGAAAATATAGATGGAAGAaactaatatctgttgagtgttgtattctgggctagacatcctaatatgttctatgcatttatcatctcataaagcc
s panTro5.chr9                  41686559 232 + 116767853 ATTCTTATGCTTTTAATATTCTGTAC-----ATT--T--ATTATTGATTTAAAATGCATTTTACC-TTCTTCTTTAATAGATGTTGGAATTTCTGATGAA---TCTGCAGTCAGGTAAGA-TTTCATAGATTT---AAAAAA---TTATGTGAACTAAGAAAATATAGATGGAAGAaactaatatctgttgagtgttgtattctgggctagacatcctaatatgttctatgcatttatcatctcataaagcc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96030073 232 - 114479721 ATTCTTATGCTTTTAATATTCTGTAC-----ATT--T--ATTGTTGATTTAAAATGCATTTTACC-TTCTTCTTTAATAGATGTTGGAATTTCTGATGAA---TCTGCAGTCAGGTAAGA-TTTCATAGATTT---AAAAAA---TTATGTTAACTAAGAAAATATAGATGGAAGAaactaatatctattgagtgttgtattcttggctagacatcctaatatgttctattcatttataatctcataaagcc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107635 232 -    116138 attcttatgcttttaataTTCTGTAC-----ATT--T--ATTGTTGATTTAAAATGCATTTTACC-TTTTTCTTTAATAGATGTTGGAATTTCTGATGAA---TCTGCAGTCAGGTAAGA-TTTCACAGATTT---AAAAAA---TTGTGTTAACTAAGAAAATATAGATGGAAGAaactaatatctattgagtgttgtattcttggctagacatcttaatatgttctatgcatttatcatctcataaagcc
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40793560 232 + 122973662 ATTCTTATGCTTTTAATATTCTGTAC-----ATT--T--ATTATTGATTTAAAATGCATGTTGCC-CTTTTCTTTAATAGATATTGGAAGTTCTGATGCA---TCTGCAGTCAGGTAGGG-TTTTATAGATTA---AAAAAA---TTATATTAACTAAGAAAATATAGATGGAAGAaactaatatctgttgagtgttgtattctgagctagacatcctaatatgtcctatgcatttatcatctcataaagcc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072244 232 - 111193037 ATTCTTATGCTTTTAATATTCTGTAC-----ATT--T--ATTATTGATTTAAAATACATTTTTCC-TTTTTCTTTAATAGATGCTGGAAGTTCTGATGAA---TCTGCAGTCAGGTAGGA-TTTAATAGATGT---AAACAT---TTATGTTAACTAAGGAAATAGAGATGGAAGAaactaatgtctgttgagtgttgtattctgggctagacatcctgctatgttctatgcatttatcatctcataaaggc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342248 231 +    434444 atttttttgcttttaataTTCTGTAT-----ATT--T--ATGATTGATTTAAAATGCATTTTGCC-TTTTTCTTTAATAGATGTTGGAAGTTCTGATGAA---TCTGCAGTCAGATAGGA-TTTTATAGATTT---AAAAA----TTATGTTAACTAAGGAAATATAGATGGAAGAaactagtatctgttgagtgtcatagtctgggctggacatcctgttatggtctatgcatttatcatctcataaagcc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389608 231 -    438202 atttttttgcttttaataTTCTGTAT-----ATT--T--ATGATTGATTTAAAATGCATTTTGCC-TTTTTCTTTAATAGATGTTGGAAGTGCTGATGAA---TCTGCAGTCAGATAGGA-TTTTATAGATTT---AAAAA----TTATGTTAACTAAGGAAATATAGATGGAAGAaactagtatctgttgagtgtcatagtctgggctggacatcctgttatggtctatgcatttatcatctcataaagcc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439344 218 +  90373283 ATTCTTTTGCTTTTAATATTCTGTAT-----ATT--T--ATTATTGATTTAAAATGCATTTTACC-TTTTTCTTTAATAGATGTTGGAAGTTCTGATGAA---TCTGCAGTCAGGTAGGA-TTTTATAGATGT---AAACAT---TTATGTTAACTAAGGAAATATAGATGGAAGAAACTAGTATCTGTTGAGTGTCATAGTCTGGGCTGGACATCCTG--------------TTTATCATCTCATAAAGCC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489765 231 -   1547936 atgtttttgcttttaatattctgtat-----att--t--aTGATTGATTTAAAATGCATTTTGCC-TTTTTCTTTAATAGATGTTGGAAGTTCTGATGAA---TCTGCAGTCAGATAGGA-TTTTATAGATTT---AAAAA----TTATGTTAACTAAGGAAATATAGATGGAAGAaactagtatctgttgagtgtcatagtctgggctggacatcctgttatggtctatgcatttatcatctcataaagcc
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64626086 231 -  72162052 ATTCTTATGTTTTTAATATTCTGTAT-----GTT--T--ATTATTGATTT-AAATGCATTTTACCTTTTTTTTTTAGTAGATGCTGGGAGTTCTGATGAA---TCTCTAGTCAGGTAGGA-TTTTGCAAATTT---AAAACG---TTATTTTAAGTAAGGAAATATAGATGGAGGAaactaatatctgttgagtgttgttttctaggataga-accctattatgtgctatgcatttatcatctcataatgcc
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1042631 229 +   1314817 attcttatgtttttaataTTCTGTAT-----ATT--T--ATTATTGATTT-AAATGCATTTTACC--TTTTTTTTAATAGATGTCGGGAGTTCTGAGGAA---TCTCTACTCAGGTAGGA-TTTTGCAAATAT---AAAACG---TTATTTTAACTAAGGAAATATAGATGGAGGAAACTAATATCTGTTGAATGTTGTATTCTGAGCTAGA-ACCCTATTATGTGCAATGCATTTATCATCTCATAAAGCC
i cebCap1.NW_016107851v1       C 0 I 510
s otoGar3.GL873538              19633881 235 -  27850971 AATCTTATGCTTTTAATATTCTGTATTAGTATTC--T--ACtattaatttaaaatgtattttatt-tttttctttaataGTGGATGGAAGTTCTGAAGAC---TCTTTAAGCAGGTACGA-GTTTACAGATTT---AAAAAACTTTTATGATAACTAGGAGGCTACAGA-----GAAAGAAATatttgttgaatattttattctgggttatacaccatattatatgcttaacatttatcatctcctatagtc
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79079008 217 -  85426708 ------------TTAATATTCTGTAT-----TTTTCT--ACTGTTGATTTAAAATGTTTTTTGCT-GCTTTCTTTACTAGTGGATAAGAATTCTGAAGAAGACTCTTTAAGCAGGTAGGATTTTTATGGATTTTTAAAAATT---ATGTGTTAACTAAGGGAGTGCAGA-----GAAA--agcatttgttgagtgttctcttctgggctagacactatattatgtgcttaatatgtgtta-----tatagtc
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1696092 223 -   2296528 ------ATG-TTTTATTATTCAGTAT-----TTT--TCAATTGTTGATTTAAAATATGTTTTTCC-------TTTAGAAGTGGAAGAGATTTCTGAAGAAGACTCTTTAAGCAGGTAGGA-TTTTACAGATTT---TAAAAT---TATCATTGACTAATGGGATGCAGG-GAAaagaactaacatttgtttaatgttctactgtgggacagacagcatactatgtatttaacatttgttttcttcgatagtc
i dasNov3.JH570393             C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=351517.000000
s hg38.chr14_GL000009v2_random     12607 70 +    201709 atcataac--------------atctgtgttcctataacctac----tgttaaataaacaactatggattagagc---tgattaattgcct
s panTro5.chr9                  41686791 70 + 116767853 atcataac--------------atctgtgttcccataacctac----ttttaaataaacaactatggattagagc---tgattaattgcct
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96030305 70 - 114479721 atcataac--------------atctgtgttcctataacctac----tattaaataaacaactatggattagagc---tgactaattgcct
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107867 70 -    116138 atcataac--------------atctgtgttcctataacctac----tattaaataaacaactatggattagagc---tgattaattgcct
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40793792 77 + 122973662 atcacaac--------------atctgtgtgcctataacctactgtttattaaataaacaactatggattagagcagttgattaattgcct
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072476 77 - 111193037 atcacaac--------------atctgtgttcctataacctactgttcattcagtaaacaactatggattagagcagttgattgattgcct
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342479 77 +    434444 atcacaac--------------atctgtgtttctataagctactgtttattaaataaacaactgtggattagagcagttgattaattggct
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389839 77 -    438202 atcacaac--------------atctgtgtttctataagctactgcttattaaataaacaactatggattagagcagttgattaattggct
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439562 77 +  90373283 ATCACAAC--------------ATCTGTGTTTCTATAAGCTACTGTTTATTAAATAAACaactatggattagagcagttgattaattggct
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1489996 77 -   1547936 atcacaac--------------atctgtgtttctataagctactgtttattaaataaacaactatggattagagcagttgattgattgcct
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64626317 73 -  72162052 atcgcaac--------------atctgtgttcctataacctactgttcactaaataggcaactatagtttagaga----ggttaattgact
i saiBol1.JH378105             C 0 C 0
s otoGar3.GL873538              19634116 90 -  27850971 atcataacagctttgta-aaatatctttgctattatatcctactatttattaattaggcaattgtgattcagagaggttgaatAGTggcct
i otoGar3.GL873538             C 0 I 271
s canFam3.chr2                  79079225 90 -  85426708 attgcaatagtttcacc-aagtagctgtgctgttatagcctactttttattaactagtcagctgtggttcagggaggtggattaattgacc
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1696315 91 -   2296528 atcacaatagccatgctgaggtagctatgctattgttgtctcatttttgctaattggacgactgtagtacagagagattaaggaattgacc
i dasNov3.JH570393             C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e cebCap1.NW_016107851v1         1042860 510 +   1314817 I

a score=167290.000000
s hg38.chr14_GL000009v2_random     12677 36 +    201709 catgatcccatagttaacaaagtagctggcctacag
s panTro5.chr9                  41686861 36 + 116767853 catgatcccatagttaacaaagtagctggcctacag
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96030375 36 - 114479721 catgatcccatagttaaaaaagtagctggcctacag
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107937 36 -    116138 catgatcccatagttaacaaagtagctggcctacag
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40793869 34 + 122973662 catgatcccatagttaacaaagtagctggcccac--
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072553 36 - 111193037 catgatcccatagttaacaaagaagctggcccacaa
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342556 34 +    434444 catgatcccatagttaacaaagtcgctggcccac--
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389916 34 -    438202 catgatcccatagttaacaaagtcgctggcccac--
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439639 34 +  90373283 catgatcccttagttaacaaagtcgctggcccac--
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1490073 34 -   1547936 catgatcccatagttaacaaagttgctggcccac--
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64626390 36 -  72162052 catgttcccagagttaacaaagtagccagcccacag
i saiBol1.JH378105             C 0 C 0
s canFam3.chr2                  79079315 35 -  85426708 caggattccatagttaat-gagtagcagacccatga
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1696406 35 -   2296528 taagacttgatagttaac-aagtagctgaatcacga
i dasNov3.JH570393             C 0 C 0
e otoGar3.GL873538              19634206 271 -  27850971 I
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e cebCap1.NW_016107851v1         1042860 510 +   1314817 I

a score=626458.000000
s hg38.chr14_GL000009v2_random     12713 115 +    201709 tttgaccatcagcctgcctgccttccaaatcctttctcttgctcctcagcaTAGATTGATAGATATCTGTGCAGCCCTTGGATCAAAG-TATAG-GTCTGAATC------AGATCAA-TCAGA----------------------T
s panTro5.chr9                  41686897 115 + 116767853 tttgaccatcagcctgcctgccttccaaatcctttctcttgctcctcagcacAGATTGATAGATATCTGTGCAGCCCTTGGATCAAGG-TATAG-GTCTGAATC------AGATTAA-TCAGG----------------------T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96030411 111 - 114479721 tttgaccatcagcctgcctgccttccaaatcctttctcttgctcctcagcaTA----GATAGGTATCTGTGCAGCCCTTGGATCAAGG-TATAG-GTCTGAATC------AGATTAA-TCAGA----------------------T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          107973 115 -    116138 tttgaccatcagcctgcctgccttccaaatcctttctcttgctcctcagcaTAGATTGATAGATATCTGTGCAGCCCTTGGATCAAGG-TATAG-GTCTGAATC------AGATTAA-TCAGA----------------------T
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40793903 114 + 122973662 tttgatcgtcagcctgcctgccttccaaatcccttctcttgctcctcagcaTAGATTGATAGACATCTGTGCAGCCCTTGGATCAAGG-TATAG-GTCTGAATC------AGATTAA-TC-GA----------------------T
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072589 115 - 111193037 cttgaccgtcagcctgcctgccttccaaatcccttctcttgctcctcagcaTAGATTGATAGACATCTGTGCAGCCATTGGATCAAGG-TATAG-GTCTGAATC------AGTTTAA-TCAGA----------------------T
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342590 115 +    434444 tttgatcatcagcctgcctgccttccaaatcccttctcttgctcctcagcaTAGATTGATAGACATCTGTGTAGCCCTTGGATCAAGG-TATAC-GTCTGAATC------AGATTAA-TCAGA----------------------T
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          389950 115 -    438202 tttgatcatcagcctgcctgccttccaaatcccttctcttgctcctcagcaTAGATTGATAGACATCTGTGTAGCCCTTGGATCAAGG-TATAC-GTCTGAATC------AGATTAA-TCAGA----------------------T
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439673 115 +  90373283 tttgatcatcagcctgcctgccttccaaatcccttctcttgctcctcagcaTAGCTCGATAGACATCTGTGTAGCCCTTGGATCAAGG-TATAG-GTCTGAATC------AGATTAA-TCAGA----------------------T
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1490107 115 -   1547936 tttgatcatcagcctgcctgccttccaaatcccttctcttGCTCCTCAGCATAGATCGATAGACGTCTGTGTAGCCCTTGGATCAAGG-TATAC-GTCTGAATC------AGATTAA-TCAGA----------------------T
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64626426 142 -  72162052 tttgaccgttagcctgcctggcttccaaatcccttctcctgctcctcagcaTAGATTGATAGAGATCTATGCAG-CATTGAATCAAAG-CACAA-GTCCGAATCCTATttagattaa-ttaaattgagacataacaaaattatttt
i saiBol1.JH378105             C 0 C 0
s otoGar3.GL873538              19634477 114 -  27850971 TTTGACCATCAGCCTG-CTGGCTCCCAAATCTTTTCTCTGGCT-CTCAGCATAGATTGTTAGAGACCT-TGCAGTCCTGGGATCCACGTTCCAG-GGCCAAATC------TGATCAAGTCAGA----------------------T
i otoGar3.GL873538             I 271 I 4
s canFam3.chr2                  79079350  89 -  85426708 tttgactgttagcctgtgtggctcccacatccattcctttG-TCCTCAGC----------------------AGCACTGGAATTAGGA-TACAG-ATC----TT------AGATCAACTCAGA----------------------A
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1696441 115 -   2296528 cttgactgtcagcctgcctggctccca-gtccattctctGTTCTTTCAGCATAGATTGAGTGGTACCTGTGCAGCACGTGGATCATGA-TGCAGCGTCCAGATA------AGATCAGCTCAGA-----------------------
i dasNov3.JH570393             C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e cebCap1.NW_016107851v1         1042860 510 +   1314817 I

a score=169979.000000
s hg38.chr14_GL000009v2_random     12828  65 +    201709 TCATTAATTT------------GATTAACTT------CTAAATTAATGAG--AGTTTAAATACCT-TGAA-------------------CTCTCATTTAAGTTTA
s panTro5.chr9                  41687012  65 + 116767853 TCATTAATTT------------GATTAATAC------ATAAGTTAATGAG--AGTTTAAATACCT-TGAA-------------------CTCCCATTTAAGTTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96030522  65 - 114479721 TCATTAATCT------------GATTAATGT------CTAAGTTAATGAG--AGTTTAACTACCT-TGAA-------------------CTCTCATTTAAGTTTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          108088  65 -    116138 TCATTAATCT------------GATTAATGT------CTAAGTTAATGAT--AGTTTAAATACCT-TGAG-------------------CTCTCATTCAAGTTTA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40794017  65 + 122973662 TCATTAATTT------------GATTAATGT------CTACATTAATGAG--GGTTTAAATACCT-TAAA-------------------CTCTCATTTAAGGTTA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072704  65 - 111193037 TCATTAATTC------------AATTAATGC------CTAAATTAGTGAG--AGTTTAAATACCT-TAAA-------------------CTCTCATTGAAGGTTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342705  61 +    434444 TCATTAAT----------------TTAATGT------CTAAATTAATGAG--AGTTTAAATACCT-TCAA-------------------CTCTCATTTAAGGTTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          390065  61 -    438202 TCATTAAT----------------TTAATGT------CTAAATTAATGAG--AGTTTAAATACCT-TCAA-------------------CTCTCATTTAAGGTTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439788  61 +  90373283 TCATTAAT----------------TTAATGT------CTAAATTAATGAG--AGTTTAAATACCT-TCAA-------------------CTCTCATTTAAGGTTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1490222  61 -   1547936 TCATTAAT----------------TTAATGT------CTAAATTAATGAG--AGTTTAAATACCT-TCAA-------------------CTCTCATTTAAGGTTA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64626568 104 -  72162052 tgattaatttaggcataacaaaaattaatttagattaataaattaacaaattaatttagatgtaa-ctaaaGATGTGTTAGAAATGTGGTTATTGCTTAAGGTTA
i saiBol1.JH378105             C 0 C 0
s canFam3.chr2                  79079439  39 -  85426708 ----------------------------------------AGTC-----G--AATTTCACTATGTGTTAA-------------------CTCTGATTTAGAGTTT
i canFam3.chr2                 C 0 I 28
s dasNov3.JH570393               1696556  40 -   2296528 ---------------------------------------AAACCGTATAT--AGTT---ATGCCT-T-AA-------------------CTCTGATTAAGAGATT
i dasNov3.JH570393             C 0 C 0
e otoGar3.GL873538              19634591   4 -  27850971 I
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e cebCap1.NW_016107851v1         1042860 510 +   1314817 I

a score=81655.000000
s hg38.chr14_GL000009v2_random     12893 20 +    201709 TTGTTAGAA-TGTGG-------TTA------------GTC
s panTro5.chr9                  41687077 20 + 116767853 TTGTTAGGA-TGTGG-------TTA------------GTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96030587 20 - 114479721 CTGCTAGAA-TGTGG-------TTA------------GTC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          108153 20 -    116138 TTGCTAGAA-TGTGG-------TTA------------GTC
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40794082 32 + 122973662 TTGTTAGAA-TGTGG-------TTAGTCCAAGAGTTTGTC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072769 32 - 111193037 TTGTTAGAA-TGTGG-------TTAGTCCAAGAGTTTGTC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342766 32 +    434444 TCATTAGAA-TGTGG-------TTAGTCCAAGAGTTTGTC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          390126 32 -    438202 TCATTAGAA-TGTGG-------TTAGTCCAAGAGTTTGTC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439849 32 +  90373283 TCATTAGAA-TGTGG-------TTAGTCCAAGAGTTTGTC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1490283 32 -   1547936 TCATTAGAA-TGTGG-------TTAATCCAAGAGTTTGTC
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64626672 20 -  72162052 TTGTCAGAA-TGCAG-------TTA------------GTC
i saiBol1.JH378105             C 0 I 12
s otoGar3.GL873538              19634595 21 -  27850971 ------------TTG-------TTAGTCTAAGAGTTTGTC
i otoGar3.GL873538             I 4 C 0
s canFam3.chr2                  79079506 27 -  85426708 TTCCTAATA-TATTGGACACAACTA------------GTA
i canFam3.chr2                 I 28 I 1
s dasNov3.JH570393               1696596 33 -   2296528 TCTCAAGAAGCCTGG-------TTAGCCCAAGAGTTTGTC
i dasNov3.JH570393             C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e cebCap1.NW_016107851v1         1042860 510 +   1314817 I

a score=229138.000000
s hg38.chr14_GL000009v2_random     12913 32 +    201709 CTAATAAATTTGACGATTTCAGTGGTAACCAG
s panTro5.chr9                  41687097 32 + 116767853 CTAATAAATTTGAAGATTTCAGTGGTAGCCAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96030607 32 - 114479721 CTAATAAATTTGACAATTTCAGTGGTAGCCAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          108173 32 -    116138 CTAATAAATTTGACAATTTCAGTGGTAGCCAG
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40794114 32 + 122973662 CTAATAAATATGACAATTTCAGTGGTAACCAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072801 32 - 111193037 CTAATAAATTTGACAATTTCAGTGGTAACCGG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342798 32 +    434444 CTGATAAATTTGACAATTTCAGTGGTAACCAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          390158 32 -    438202 CTGATAAATTTGACAATTTCAGTGGTAACCAG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439881 32 +  90373283 CTGATAAATTTGACAATTTCAGTGGTAACCAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1490315 32 -   1547936 CTGATAAATTTGACAATTTCAGTGGTAACCAG
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64626704 32 -  72162052 CTAATAAATTTGACAATTTCAGTAGCAACCAG
i saiBol1.JH378105             I 12 C 0
s cebCap1.NW_016107851v1         1043370 32 +   1314817 CTAATAAATTTGACAATTTCAGTAGTAACCAG
i cebCap1.NW_016107851v1       I 510 C 0
s otoGar3.GL873538              19634616 32 -  27850971 CTTGTGTATTTGACAGTTACTGTGATAACTAG
i otoGar3.GL873538             C 0 I 289
s canFam3.chr2                  79079534 32 -  85426708 TAACTAGAGGTAATTATTGCAGTGGTAACTAG
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1696629 32 -   2296528 CTAGTATATTTGACATTTGGAGTAGTAACCAG
i dasNov3.JH570393             C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=665968.000000
s hg38.chr14_GL000009v2_random     12945 110 +    201709 TATCTTATTTTT-ACCTTCAAAGGCTCTAGGGCAGATCTGACTTAGCTTTGGCCATAGGACTGTAAG---TTTTACCAAAGCAAG-----T-----TTAGGCAAGT---------------------------CTTAGAGACAAATTATTT-------------
s panTro5.chr9                  41687129 110 + 116767853 TGTCTTGTTTTT-ACCATCAAAGGCTCTAGGGCAGATCTGACTTAGCTTTGACCACAGGAGTGTAAG---TTTTACCAAAGCAAG-----T-----TTAGGCAAGT---------------------------CTTAGAGACAAATTATTT-------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96030639 110 - 114479721 TATCTTATTTTT-ACCATCAAAGGCTCTAGGGCAGATCTGACTTAGCTTTGGCCATAGGACTGTAAG---TTTTACCAAAGCAAG-----T-----TTAGGCAAGT---------------------------CTTAGAGACAAATTATTT-------------
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          108205 110 -    116138 TATCTTATTTTT-AACATCAAAGTCTCTAGGGCAGATCTGACTTAGCTTTGGCCATAGGACTGTAAG---TTTTACCAAAGCAAG-----T-----TTAGGCAAGT---------------------------CTTAGAGACAAATTATTT-------------
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40794146 110 + 122973662 TATCTAATTTTT-ACCATCAAAGGCTTTAGGGCTGATCTTACTTAGTTTTGGCCATAGGACTGTAAG---TTTTACAAAAGCAAG-----T-----TTAGGCAAGT---------------------------CTTAGAGAGAAATTATTT-------------
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072833 110 - 111193037 TATCTTATTTTT-ACCATCAAAGGCTTTAGGGCAGAACTTACTTAGCTTTGGCCATAGGACTGGAAG---TTTTACAAAAGTAAG-----T-----TTAGGCAAGT---------------------------CTTAGAGAGAAATGATTT-------------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342830 106 +    434444 TATCTTATTTTT-ACCATCAAAGGCTTTAGGGCAGATCTTACTTAGCTATGGCCATAGGACTGTAAG---TTTTACAAAATCAAA-----T-----TTAGGCAAGC---------------------------CTT----AGAAATTATTT-------------
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          390190 106 -    438202 TATCTTATTTTT-ACCATCAAAGGCTTTAGGGCAGATCTTACTTAGCTATGGCCATAGGACTGTAAG---TTTTACAAAATCAAA-----T-----TTAGGCAAGC---------------------------CTT----AGAAATTATTT-------------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66439913 106 +  90373283 TATCTTATTTTT-ACCATCAAAGGCTTTAGGGCAGATTTTACTTAGCTATGGCCATAGGACTGTAAG---TTTTACAAAATCAAA-----T-----TTATGCAAGC---------------------------CTT----AGAAATTATTT-------------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1490347 106 -   1547936 TATCTTATTTTT-ACCATCAAAGGCTTTAGGGCAGATCTTACTTAGCTATGGCCATAGGACTGTAAG---TTTTACAAAATCAAA-----T-----TTAGGCAAGC---------------------------CTT----AGAAATTATTT-------------
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64626736 109 -  72162052 TATCTTA-TTCT-ACCTTTAAAGGTTTTAGGACAGATCTTACTTAGCTTTGGACATAGGACTGTAAG---TTTTAGAAAAGTAAG-----T-----TTAGGCAGGT---------------------------CTTAGAGAGGAATTATTT-------------
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1043402 110 +   1314817 TGTCTTATTTTT-ACCTTTAAAGGTTTTAGGACAGATCTCACTTAGCTTTGGCCATAGGACTATAAG---TTTTAGAAAAGTAAG-----T-----TTAAGCAAGT---------------------------CTTAGAGAGAAATTATTT-------------
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19634937 111 -  27850971 TATTTTGTTTTTAACCATCAATGGTTTTAGGTCAGATCACACTTAGCTGTGGTCAAAGCACCATATG---ATTTACATAAGCAAG-----A-----CCAGGCAAGT---------------------------CCTAGAGAGGAATTATTT-------------
i otoGar3.GL873538             I 289 I 924
s canFam3.chr2                  79079566 142 -  85426708 TTTCTTGTTTTT-ACTGTCAAAGATTTTGGAGTGGATCTCAGTTACCTATGGCCACAGTAA-GCAAGCCCTTTTACATAAGCAAG-----CCCTAGTGTGGCGAGT--TCTTAGATTTAGTGCCGTCTGCTCCCCTTGAGATGAATGATTT-------------
i canFam3.chr2                 C 0 I 100
s dasNov3.JH570393               1696661 155 -   2296528 CACCTTGTTTTT-ATCATTAAGGGCTTTAGAGCCAATCTTAGTTAGCTATGGCCACAGGGCCAGGGG---TGTTATATAAGGAAGACCTCT-----TCAGGCAAGTCTTCTTAGGTATACTGATATTTGCTCCCTTAGAGATTAATTCCTATATGATGAAGAAT
i dasNov3.JH570393             C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=4614.000000
s hg38.chr14_GL000009v2_random     13055 1 +    201709 G
s panTro5.chr9                  41687239 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96030749 1 - 114479721 G
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          108315 1 -    116138 G
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40794256 1 + 122973662 G
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072943 1 - 111193037 G
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342936 1 +    434444 G
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          390296 1 -    438202 C
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66440019 1 +  90373283 G
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1490453 1 -   1547936 G
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64626845 1 -  72162052 G
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1043512 1 +   1314817 G
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79079808 1 -  85426708 G
i canFam3.chr2                 I 100 C 0
s dasNov3.JH570393               1696816 1 -   2296528 A
i dasNov3.JH570393             C 0 C 0
e otoGar3.GL873538              19635048 924 -  27850971 I
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=1382502.000000
s hg38.chr14_GL000009v2_random     13056 241 +    201709 -----------------------------------------------------------------------------------ACTTCACAGTTTGGTTT-TCCATTTAGGCAAGTATTTCTGCTTACTTCCATAA--------------------------------------------------TACATTTTTT------------------AGTCTTGT-TGCTTTTTCCATGACTTTTATA-TAATCTTGTCCTCATTTTTTAA--AACTTTCTTCTCTGTTTTTCTTGGTGTTTCTTTTGTTCTATTA--TTTTTTCAAACTCTGCTGCCTATGTATTCCAAGTTTTTCTATAG----------------ACAGAATCAAGAGGACATAGAATTACAGA-ATTTT---------------------------------------------------------------------------AAGGAA
s panTro5.chr9                  41687240 241 + 116767853 -----------------------------------------------------------------------------------ACTACCCAGTTTGGTTT-TCCATTTAGGCAAGTATTTCTGCTTACTTCCATAA--------------------------------------------------TACATTTTTT------------------AGTGTTGT-TGCTTTTTCCATGACTTTTCTA-TAATTTTGTCTTCATTTTTTAA--AACTTTCTTCTCTGCTTTTCTTGGTGTTTCTTTTGTTCTATTA--TTTTTTCAAACTCTGCTGGCTATGTATTCCAAGTTTTTCTATAG----------------ACAGAATCAAGAGGACATAGAATTACAGG-ATTTT---------------------------------------------------------------------------AAGGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96030750 241 - 114479721 -----------------------------------------------------------------------------------ACTTCCCAGTTTGGTTT-TCCATTTAGGCAAGTATTTCTGCTTACTTCCATAA--------------------------------------------------TACATTTTTT------------------AGTCTTGT-TGCTTTTTCCATGACTTTTCTA-TAACCTTGTCTTCATTTTTTAA--AACTTTCTTCTCTGCTTTTCTTGGTGTTTCTTTTGTTCTATTA--TTTTTTCAAACTCTGCTGCCTATGTATTCCAAGTTTTTCTATAG----------------ACAGAATCAAGAGGACACAGAATTACAGG-ATTTT---------------------------------------------------------------------------AAGGAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          108316 241 -    116138 -----------------------------------------------------------------------------------ACTTCCCAGTTTGGTTT-TCCATTTAGGCAAGCATTTCTGCTTACTTCCATAA--------------------------------------------------TACATTTTTT------------------AGTCTTGT-TGCTTTTCCCATGACTTTTGTA-TAATCTTGTCTTGATTTTTAAA--AACTTTCTTCTCTGATTTTCTTGGTGTTTCTTTTGTTCTATTA--TTTTTTCAAACTCTGCTGCCTATGTATTCCAAGTTTTTCTATAG----------------ACAGAATCAAGAGGACATAGAATTACAGG-ATTTT---------------------------------------------------------------------------AAGGAA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40794257 256 + 122973662 -----------------------------------------------------------------------------------ACTTCTCAGTTTGGTTT-TCCATTTAGGCAAGTATTTCTGCTTACTTCCATAA--------------------------------------------------TACTTTTTTT------------------AGTGTTGT-TTCTTTTTCCATGACTTTTCTA-TAATCTTGTCTTGATTTTTTAA--AACTTTCTTCTCTG-TTTTCTTGGTGTTTCTTTTGTTCTATTA--TTTTTTCAAACTCTGATGGCTATGTATTCCCAGTTTTTCTATAGAGGACAGTTTTTCTATAGAGAATCAAGAGGACATAGAATTACAGA-ATTTT---------------------------------------------------------------------------AAGCAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111072944 239 - 111193037 -----------------------------------------------------------------------------------ACTTCCCAGTTTGGTTT-TCCATTTAGGCCAGGCGTTCTGTTGACTTCCATAA--------------------------------------------------TACTTTTTTA------------------AGTCTTGT-TTCTTTTTCCATGACTTTTCTA-TAATCTTGTCTTGA-TTTTTAA--TGCTTTCCTCTCTGCTTTTTTT-GTGTTTCTTTTGTTCTATTA--TTTTTTCAAATTCTGTTGGCTATGTACTCCCAGTTTTCCTATAG----------------ACAGAATCAAGAGGACATAGAATTACAGA-ATGTT---------------------------------------------------------------------------AAGGAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          342937 238 +    434444 -----------------------------------------------------------------------------------ATTTCCTGGTTTTGTTT-TCCATTTAGGCTAGTATTTTTGCTTACTTCCATAA--------------------------------------------------TACGTTTTTT------------------AGTCTTGT-TTCTTTTTCCATGAATTTTCCA-TAATCTTGTATTGATTTTTTAA--AACTTTCTTCTCTGCTTTTTTTGGTGTTTCTTTTATTCTATTA-TTTTTTTCAAATTCT----GCTATGTATTCCCAGTTTTCCTATAG----------------ACAGAATCAAAAGCACATAGAATTACAGA-ATTTT---------------------------------------------------------------------------AAGGAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          390297 238 -    438202 -----------------------------------------------------------------------------------ATTTCCTGGTTTTGTTT-TCCATTTAGGCTAGTATTTTTGCTTACTTCCATAA--------------------------------------------------TACTTTTTTT------------------AGTCTTGT-TTCTTTTTCCATGAATTTTCCA-TAATCTTGTATTGATTTTTTAA--AACTTTCGTCTCTGCTTTTTTTGGTGTTTCTTTTATTCTATTA-TTTTTTTCAAATTCT----GCTATGTATTCCCAGTTTTCCTATAG----------------ACAGAATCAAAAGCACATAGAATTACAGA-ATTTT---------------------------------------------------------------------------AAGGAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66440020 234 +  90373283 -----------------------------------------------------------------------------------ATTTCCCGGTTTTGTTT-TCCATTTAGGCTAGTATTTTTGCTTACTTCCATAA--------------------------------------------------TACTTTTTTT------------------AGTCTTGT-TTCTTTTTCCAC---TTTTCTA-TAATCTTGTCTTGA-TTTTTAA--AACTTTCTTCTCTGCTTTTTTTGGTGTTTCTTTTATTCTATTA-TTTTTTTCAAATTCT----GCTATGTATTCCCAGTTTTCCTATAC----------------ACAGAATCAAAAGCACATAGAATTACAGA-ATTTT---------------------------------------------------------------------------AAGGAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1490454 237 -   1547936 -----------------------------------------------------------------------------------ATTTCCTGGTTTTGTTT-TCCGTTTAGGCTAGTATTTTTGCTTACTTCCATAA--------------------------------------------------TACTTTTTTT------------------AGTCTTGT-TTCTTTTTCCATGAATTTTTCA-TAATCTTGTATTGATTTTTTAA--AACTTTCTTCTCTGCTTTTTTTGGTGTTTCTTTTATTCTATT--TTTTTTTCAAATTCT----GCTATGTATTCCCAGTTTTCCTATAG----------------ACAGAATCAAAAGCACATAGAATTACAGA-ATTTT---------------------------------------------------------------------------AAGGAA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64626846 241 -  72162052 -----------------------------------------------------------------------------------ACTTCCCTGGTTGGTTT-TCCCTTTAGGCTCATATTTCCACCTACTTCCATAA-------------------------------------------------TTTTTTTTTTT------------------AGTCTATT-TTCTTTTTCCATGACTTTTCTA-TAATCTTGTCTTGATGTTTTAA--AACTTTCTTCTCTGGTTTTCTTGGTGTTTCTTTTGCTCTATTC--TTTTTTCAAATTCTGCTGGCTATGCATTCCCAGTTTTTCTACAG----------------ACAAAATTAAAAGCACATGGAATCACAGA-ATCTT----------------------------------------------------------------------------AGGAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1043513 239 +   1314817 -----------------------------------------------------------------------------------ACTTCCCAGGTTGGTTT-TCCCTTTAGGCTCGTATTTCCACCTACTTCCATAA---------------------------------------------------TTTTTTTTT------------------AGTCTTTT-TTCTTTTTCCATGACTTTTCTA-TAATCTTGTCTTGATGTTTTAA--AACTTTCTTCTCTGGTTTTCTTGGTGTTTCTTTTGCTCTATTC--TTTTTTCAAATTTTACTGGCTATGCATTCCCAGTTTTTCTATGG----------------ACAGAATTAAAAGCACATGGAATCACAGA-ATTTT----------------------------------------------------------------------------AGGAA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19635972 242 -  27850971 -----------------------------------------------------------------------------------ACTTCCTAGTTTGGTTT-TCTCTTTAGGCTAATACTCCCACTTAGTTCAGTGAAG--------------------------------------------ttttttcttttttt------------------tctgtagtctttcctccccatgacttttcta-taatcttttcttgatttttta---------cttctctgtttttcttGATGtttctttctttctttcttttctttttttttttTGCCAGGTAAATAGTCCCCATTTTTCTATGG----------------ACAGAATCAA-AGCACATTGAATTTCAGG-ATTTT---------------------------------------------------------------------------AAGGAA
i otoGar3.GL873538             I 924 C 0
s canFam3.chr2                  79079809 388 -  85426708 -----------------------------------------------------------------------------------ACTTCTCAGTCTAATTTCCCCCTTTAGGCTGGCACATTTGATAAATTCTGTGAAGCTTtttctttctttctttctttctttctttctttctttctttctttctttctttttttttttttttttttTTGGAGAATTTTTT-CTTTTTCTCCATGACTTTTCTA-TAGGCTTTACTTGATTTTTTTGTTAATTTTCTTCTCCAATTTTCTTGGTGTTTATTTTATTCCATTA-CTTTTTTCCATTTCTGCCAGCTAAGTATTCTGCATTTTTCTACAG----------------ACAAAAAGAAAAGCAGATAGAATTTCAGG-GTTTTAAATAAtttatttatttattttttttttgttttttgtttttttgttttttttgttttttgttttttttttgttttAAAGAA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1696817 322 -   2296528 ACTACACATAGACCATGTTATATTAATAAAATCACTCATTTAGAGACTATTTTGAATTAGTTTCTCTACTTAGGGTCTTACTGACTTCCCACTCTGGTTT-------CAGAGTAGTACTCTTGCCCAGTTCTGTGA--------------------------------------------AGATTATTCTTCATCT------------------CGGTGTCT-TTTTTCTTTAATGACTTCCAAATTAAtcttttcttgatttt------tactttcttctctgcttttcttggtgtttcttttgttctatta--ttttttcCACTTCTGCCAACTAAGTAGTCCTTGTTTTTCTATGG----------------ACAGAATCATAAGCACATAGAATTTCAGGTATTTT---------------------------------------------------------------------------AAAAAa
i dasNov3.JH570393             C 0 I 391
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=30815.000000
s hg38.chr14_GL000009v2_random     13297  6 +    201709 TCTT-----GG
s panTro5.chr9                  41687481  6 + 116767853 TCTT-----GG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96030991  6 - 114479721 TCTT-----GG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          108557  6 -    116138 TCTT-----GG
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40794513  6 + 122973662 TCTT-----GG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111073183  6 - 111193037 TCTT-----AG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          343175  6 +    434444 TCTT-----AG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          390535  6 -    438202 TCTT-----AG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66440254  6 +  90373283 TCTT-----AG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1490691  6 -   1547936 TCTT-----AG
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64627087  6 -  72162052 TCTT-----AG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1043752  6 +   1314817 TCTT-----AA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19636214 11 -  27850971 TCTTAAGTAAG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79080197  6 -  85426708 TTTA-----GA
i canFam3.chr2                 C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1697139 391 -   2296528 I

a score=956362.000000
s hg38.chr14_GL000009v2_random     13303 179 +    201709 AATG----AATTAAAATACCTTCTAGTATTTTTCTCTGCGTTGAACATTCTGGTCAAGTGattctctagatagagaatgtgaggctc-aaagagattacgaa-gcttt---tt--t------ttagacataggaattggcagaaatgagatttgaactc-------atggt---------aaagcccagtactcttGCTTCTTTCTATGTCC
s panTro5.chr9                  41687487 181 + 116767853 AATG----AATTAAAATACCTTCTAGTATTTTTACCTGTGTTGAACATTCTGGTCAAGTGattctctagatacagaatgtgaggctc-aaagagattaggat-gcttt---tttct------ttagacataggaattggcagaaatgagatttgaactc-------atggt---------aaagcccagtacttttGCTTCTTTTTATGTCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96030997 177 - 114479721 AATG----AATTAAAATACTTTCTGGTATTTTTACCTGTGTTGAAC--TCTGGTCAAGTGattctctagatagagaatgtgaagctc-aaagagattaggat-gcttt---tt--t------ttagacataggaattggcagaaatgagatttgaactc-------atgtt---------aaagcccagtactcttgcttcttattgtatac
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          108563 179 -    116138 AATG----AATTAAAATACTTTCTATTATTTTTACCTGTGTTAAACATTCTGGTCAAGTGattctctagatagagaatgtgaggctc-aaagagattaggat-gcttt---tt--t------ttagacacaggaattggcagaaatgagatttgaactc-------atgtt---------aaagcccagtactcttGCTTCTTTTTGTATAC
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40794519 180 + 122973662 AATG----AATTAAAATACCTTCTAGTATTTTTACCTGTGTTGAACATTCTGGTCAAGTGATACTCTagatagagaatgtgaggctc-aaagagattaggat-gcttt---ttt-t------ttagacataggaattggcagaaatgagatttgaactc-------gtggt---------aaagcccagtactcttGCTTCTTTTTATATCC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111073189 155 - 111193037 AATG----AATTAAAATACCTCCTAGTATTTTTACCTGTGTTGAATATTCCAGTTAAGTGattctgtagatagagaatgtgaggctc-aaagagattagtat--gctt---tt--t------ctagacatagcaattggcagaaatgagatttgaactc-------aTTTT---------AAAGCCCAG-----------------------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          343181 176 +    434444 AATG----AATTAAAATACCTTGTAGTATTTTCACGTGTGTTGAATATTCTGGTGAAGTGattctttagatagagaacttgagaatc-aaaaagattaggtt----tt---tt--t------ttagacataggaattggcagaaatgagatttgtactc-------atttt---------aaagcccagtactcttccttctTTTTATATCC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          390541 177 -    438202 AATG----AATTAAAATACCTTGTAGTATTTTCACGTGTGTTGAATATTCTGGTGAAGTGattctttagatagagaacttgagaatc-aaaaagattaggat---ttt---tt--t------ttagacataggaattgacagaaatgagatttgtactc-------atttt---------aaagcccagtactcttccttctTTTTATATCG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66440260 180 +  90373283 AATG----AATTAAAATACCTTGTAGTATTTTCACGTGTGTTGAATATTCTGGTGAAGTGATTCTTTAGATAGAGAACTTGAGACTC-AAAAAGATTAGGATGGTTTT---TT--T------TTAGACATAGGAATTGGCAGAAATGAGATTTGTACTC-------ATTTT---------AAAGCCCAGTACTCTTCCTTCTTTTTATATCC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1490697 178 -   1547936 AATG----AATTAAAATACCTTGTAGTATTTTCACGTGTGTTGAATATTCTGGTGAAGTGATTCTTTAGATAGAGAACTTGAGAATC-AAAAAGATTAGGAT--TTTT---TT--T------TTAGACATAGAAATTGGCAGAAATGAGATTTGTACTC-------ATTTT---------AAAGCCCAGTACTCTTCCTTCTTTTTATATCC
i manLeu1.NW_012105442v1       C 0 I 147
s saiBol1.JH378105              64627093 179 -  72162052 GACT----AATTAAAATATCCTCTATTACTTCAACCTGTGTTGAACTTTCTGATCAAGTGattctctagatagagaacccaggactc-aaagagatgaagat-gcctt---tt--t------ttagacataggaagtggcaaaagtgagatttgaactc-------ctttt---------aaagcccagtactcttctctcCTTTTTTTTTT
i saiBol1.JH378105             C 0 I 6
s cebCap1.NW_016107851v1         1043758 178 +   1314817 GACT----AATTAAAATACCCTCTAGTACTGCAACCTGTGTTGAACTTTCTGGCCAAATGattctctagatagagaacctaagactc-aaagagatgaagat-gcctt---tt--t------ttagacataggaagtcgcaaaaatgagatttgaactc-------atttt----------aagcccagtACTCTTCCTTCCTTTTTTTTTT
i cebCap1.NW_016107851v1       C 0 I 5
s otoGar3.GL873538              19636225 185 -  27850971 AACT----AATCAAAATACCCTCTAGAACTTCAACTTGTCTTTAACATCCTGG-AAAGTGGTTGTTcacatagagaacctgagattc-atagagattaaagc-atcataactt--t------atggtgat-gttagtgacaaaagtgagatttgaactc-------aggttctttaattcaaagcttagtactct----tcttgtgtaatcc
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79080203 174 -  85426708 GATGCGTTAATCAAAATACCCCCTGGCACAGTAACCCGTGTTTAACATCCTTACCAAGTGGTTGTTGAAGTGGAGAATTTGAAACTCAAAAGGGATTAAAGT-GACTT---GC--TTGGA--TTTGATACCG----TGACAGAAATGAGGTTTAAGTTT-------AGATT-------------------TTTCCCCCTCTTTTTCTCATCT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1697530 190 -   2296528 aatc----aatgacaacaccttctagtacttgaacctctattcatagttcttgccaaatggttgttcagatggagaatctgaaactc-acatggattaaagc-aactt---at--ctagatcttatatatagtaagtggcagaaattagattggaactctaggtttaagtt---------taagcccaacattctccctttttatcatcc--
i dasNov3.JH570393             I 391 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=592411.000000
s hg38.chr14_GL000009v2_random     13482 132 +    201709 TATTGGCGTGTGTTTTAATAATACAAA---CGGAAG-TGAGTCT----------GTGGATAGAATGAGAATGGAATTAGCTGGTGAACCCAATGGAAGTAGATAAGAATGGAATGAGCAGGGGAAGTCCAAGTTTGAAGATAAACA
s panTro5.chr9                  41687668 132 + 116767853 TATTGGCATGTGTTTTAATAATACAAA---CGGGAG-TGAGTCT----------GTGGATAGAATGAGAATGGAATTAGCTGGTGAACCAAATGGAAGTAGATAAGAATGGAATGAGCAGGGGAAGTCCAAGTTTGAAGATAAACA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96031174 132 - 114479721 tatTGGCATGTGTTTTAATAATACAAA---CGGGAG-TGAGTCT----------GTAGATAGAATGAGAATGGAATTAGCTGGTGAACACAATGGAAGTAGATAAGAATGGAATGAGCAGGGGAAGTCCAAGTTTGAAGATAAACA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          108742 132 -    116138 TATTGACATGTGTCTTAATAATACAAA---TGGGAG-TGAGTCT----------GTAGATAGAATGAGAATGGAATTAGCTGGTGAACATAATGGAAGTAGATAAGAATGGAATGAGCAGGGGAAGTCCAAATTTGAAGATAAACA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40794699 142 + 122973662 TATTGGCATGTGTTTTCATAATACAAA---CGGGAG-TGAGTCTGGTACACCCAGGGGATAGAATGAGAATGGAATTAGCTAGTGAACCCAATGGAAGTAGATAAGAATGGAATGAGCAGGGGAAGGCCAAGTTTGAAGATAAACA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111073344 121 - 111193037 ---------------------TAGAAA---CAGGAG-TGAGTCTGGTGCACACAGTGGATAGAATGAGAATGGAATTAGCTGGTGAACCCAATGGAAGTAGGTAATAATGGAATGAGCAGGGGAAAGGCACGTTTGAAGAGAAACA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          343357 141 +    434444 TATTGGCGTGTGT-TTAATAATACAAA---CGGGAG-TGAGTCTCTTGCACCCAGTGGATAGAAGGAAGGTGGAATTAGCTAGTGAACCCAATGAAAGTGGGTAAGAATGGAATGAGCAGAGGAAGGCCAAGTTTGAAGAGAAACA
i macNem1.NW_012012823v1       C 0 I 7
s cerAty1.NW_012002921v1          390718 141 -    438202 TATTGGCGTGTGT-TTAATAATACAAA---TGGGAG-TGAGTCTCTTGCACCCAGTGGATAGAATGAAGATGGAATTAGCTAGTGAACCCAATGAAAGTGGGTAAGAATGGAATGAGCAGAGGAAGGCCAAGTTTGAAGAGAAACA
i cerAty1.NW_012002921v1       C 0 I 7
s chlSab2.chr2                  66440440 141 +  90373283 TATTGGCGTGTGT-TTAATAATACAAA---CGGGAG-TGAGCCTCTTGCACCCAGTGGATAGAATGAAGGTGGAATTAGCTAGTGAACCCAATGAAAGTGGGTAAGAATGGAATGAGCAGAGGAAGGCCAAGTTTGAAGAGAAACA
i chlSab2.chr2                 C 0 C 0
s saiBol1.JH378105              64627278 143 -  72162052 TATTTGTGTGTATTTTAGTAATAGAAAG--AGTGAG-TGAGTCTTGTGCACCCCATGGATAGAATGAGAATGGAATGAGCTGGTGAACCCAATGGAAGCAGATAAGAATGGAATGAGCAGGGGAAGGCCAAGTTTGAAGAGGAACA
i saiBol1.JH378105             I 6 C 0
s cebCap1.NW_016107851v1         1043941 141 +   1314817 TATTTGTGTGTGTTTTAATAATAGAA----AGTGAG-TGAGTCTTGTGCACCCTGTGGATAGAATGAGAATGAAATGAGCTGGTGAGCCCAATGGAAGCGGATAAGAATGGAATGAGCAGGGAAAGGCCAAGTTTGAAGAGAAACA
i cebCap1.NW_016107851v1       I 5 C 0
s otoGar3.GL873538              19636410 106 -  27850971 tgccaCGGAGTGTTTTAATAACAGAAT---TGGGGGCTGGGTCT-------------------------------------AGCAAACCCATTGGAGGAGAATAAGAATAAAATTAGCTGGATAAGGCCAAGCTCATTGAGAAGCA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79080377  83 -  85426708 TGTAGGTGAATGTTTTAACCATAGAAAGATAGGGAG-TGGGTCT----------------------------------ACTGG---------------------------GAATTAGCAGGGGAGGG-CACGTTTCAAGAAGAACC
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1697720 106 -   2296528 tgTAGGTGAATATGTTAATACTAGAAAGTTGGGGGG-TGGGTCT-------------------------------------AGTGACCACAATGGAAGAGAATAAGCATGGAGTTAGCAGGGGAGG--CAAGTTTGAAGAGGAACA
i dasNov3.JH570393             C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e manLeu1.NW_012105442v1         1490875 147 -   1547936 I

a score=200615.000000
s hg38.chr14_GL000009v2_random     13614 75 +    201709 ACACTGGATTGGATAGGAGTACGGACTCTTCTACA-AGAGATCAAAGTATTGGGGTTTATGACAAGTTTGATAAAG
s panTro5.chr9                  41687800 75 + 116767853 ACACTGGATTGGATAGGAGTTTGGACTCTCCTATA-AGAGATCAAAGTATTGGGGTTTATGACAAGTTTGATAAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96031306 75 - 114479721 GCACTGGATTGGATAGGAGTACGGACTCTTCTATA-AGAGATCAAAGTATTGGGGTTTATGACAAGTTTGATAAAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          108874 75 -    116138 GCACTGGATTGGATAGGAGTACGGACTCTTCTATA-AGAGATCAAAGTATTGGGGTTTATGACAAGTTTGATAAAG
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40794841 73 + 122973662 ACACTGGATTGGATAGGAGTATGGACTCTTCAGTA-AGAGATCAAAATATTGGGGTTTATG--AAGTTTGATAAAG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111073465 65 - 111193037 ACACGGGAT----------TACAGACTCTTCAATA-AGAGCTCAAAACATTGGTTTTTATGACAAGTTTGGTAAAG
i macFas5.chr13                C 0 C 0
s chlSab2.chr2                  66440581  8 +  90373283 -------------------------CTTATCAA-------------------------------------------
i chlSab2.chr2                 C 0 C 0
s saiBol1.JH378105              64627421 75 -  72162052 ACACTGGATTGGATAGGAGTATGGACTCTTCAATA-AGAGATCAGAATCTTGGGGTTTATGACAAGTTTGATAAGG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1044082 75 +   1314817 ACACTGGATTGGATAGGAGTATGGACTCTTCAATA-AGAGATCAGAATCTTGGGGTTTATGACAAGTTTGATAAAG
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19636516 69 -  27850971 ATGTTGGATAGGATCAAAG------CCTTTAGAAA-AGATATTAGAATATTGGGGTATCTGATAAGTTTGATAAAG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79080460 73 -  85426708 ACACTGG-TTGAATAGGAATA-AGAGTGTTAGAAA-AGATGTCAGAATATTGGGGTTTATGACAAGATAGATACAG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1697826 76 -   2296528 GCACTGGGATGGATAGGAATAAGGGTTTTAGAAAAGAGATATCAGAACATTGGGGTTTTTGATATGCTTGATAAAG
i dasNov3.JH570393             C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e manLeu1.NW_012105442v1         1490875 147 -   1547936 I
e cerAty1.NW_012002921v1          390859  7 -    438202 I
e macNem1.NW_012012823v1          343498  7 +    434444 I

a score=8281.000000
s hg38.chr14_GL000009v2_random     13689 1 +    201709 A
s panTro5.chr9                  41687875 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96031381 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          108949 1 -    116138 A
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40794914 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111073530 1 - 111193037 A
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          343505 1 +    434444 A
i macNem1.NW_012012823v1       I 7 C 0
s cerAty1.NW_012002921v1          390866 1 -    438202 A
i cerAty1.NW_012002921v1       I 7 C 0
s manLeu1.NW_012105442v1         1491022 1 -   1547936 A
i manLeu1.NW_012105442v1       I 147 C 0
s saiBol1.JH378105              64627496 1 -  72162052 A
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1044157 1 +   1314817 A
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19636585 1 -  27850971 A
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79080533 1 -  85426708 A
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1697902 1 -   2296528 A
i dasNov3.JH570393             C 0 I 450
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e chlSab2.chr2                  66440589 0 +  90373283 C

a score=5167560.000000
s hg38.chr14_GL000009v2_random     13690 834 +    201709  
s panTro5.chr9                  41687876 826 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96031382 827 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          108950 814 -    116138  
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40794915 806 + 122973662  
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111073531 833 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          343506 831 +    434444  
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          390867 791 -    438202  
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66440589 831 +  90373283  
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1491023 833 -   1547936  
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64627497 821 -  72162052  
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1044158 825 +   1314817  
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19636586 788 -  27850971  
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79080534 840 -  85426708  
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1698353 827 -   2296528  
i dasNov3.JH570393             I 450 I 2339
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=120808.000000
s hg38.chr14_GL000009v2_random     14524 18 +    201709 CTCAATAAGAACATACAT
s panTro5.chr9                  41688702 18 + 116767853 CTCAATAAGAACATACAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96032209 18 - 114479721 CTCAATAAGAACATACAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          109764 18 -    116138 CTCAATAAGAACATACAC
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40795721 18 + 122973662 ctcaataagaacatagac
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111074364 18 - 111193037 CTCAATAAGAATATACAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          344337 18 +    434444 CTCAGTAAGAACATACAC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          391658 18 -    438202 CTCAGTAAGAACATACAC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66441420 18 +  90373283 CTCAGTAAGAACATACAC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1491856 18 -   1547936 CTCAGTAAGAACATACAC
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64628318 18 -  72162052 ctcaataagaacatacac
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1044983 18 +   1314817 CTCAATAAGAACATACAC
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19637374 18 -  27850971 CCTAAAAATAACTTGTAC
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79081374 18 -  85426708 CCCACTAATAACATATAC
i canFam3.chr2                 C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1699180 2339 -   2296528 I

a score=107125.000000
s hg38.chr14_GL000009v2_random     14542 15 +    201709 CTTTGCTATTTGACT
s panTro5.chr9                  41688720 15 + 116767853 CTTTGTTATTTGACT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96032227 15 - 114479721 CTTTGTTATTTGACT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          109782 15 -    116138 CTTTGTTATTTGACT
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40795739 15 + 122973662 ctttgttatttgact
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111074382 15 - 111193037 CTTTGTTATTTGACT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          344355 15 +    434444 CTTCATTATTTGATT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          391676 15 -    438202 CTTCGTTGTTTGGTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66441438 15 +  90373283 CTTTGTTGTTTGGTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1491874 15 -   1547936 CTTCGTTGTTTGGTT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64628336 15 -  72162052 ctttgttatttggct
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1045001 15 +   1314817 CTTTGTTATTTGACT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6403649 15 -   6597006 CTTTGTTATTTGGCT
i aotNan1.NW_018488791v1       N 0 C 0
s otoGar3.GL873538              19637392 15 -  27850971 ATTTGTTCTTTGATT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79081392 15 -  85426708 ATTTGTTCTTTAACa
i canFam3.chr2                 C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1699180 2339 -   2296528 I

a score=323745.000000
s hg38.chr14_GL000009v2_random     14557 51 +    201709 TCTGTACATTTAGCT-TTCATACATTTCAAATATTGTGTTGGTTTTCCTGTA
s panTro5.chr9                  41688735 51 + 116767853 TCTGTACATTTAGCT-TTCATACCTTTCAAATATTGTAGGGGCTTTCCTGTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96032242 51 - 114479721 TCTGTACATTTAGCT-TTCATACCTTTCAAATATTGTAGGGGCTTTCCTGTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          109797 51 -    116138 TCTGTACATTTGGCT-TTCATACATTTCAAATATTGTAGGGGCTTTCCTGTA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40795754 51 + 122973662 tttgtacatttagct-ttcatacatttcaagTATTGCAGGGGATTTCCTGTA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111074397 51 - 111193037 TTTGTACATTTAGCT-TTCATACATTTCAAATATTGCAGGAGATTCCCTATA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          344370 51 +    434444 TTTGTACATTTAGCT-TTCATACATTTCAGATATTGCAGGGGATTCCCTGTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          391691 51 -    438202 TTTGTACATTTAGCT-TTCATACATTTCAAATATTGCAAGAGAGTCCCTGTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66441453 51 +  90373283 TTTGTACATTTAGCT-TTCATACATTTCAAATATTGCAGGGGATTCCCTATA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1491889 51 -   1547936 TTTGTACATTTAGCT-TTCATACATTTCAAATATTGCAAGAGAGTCCCTGTA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64628351 51 -  72162052 tttgtacatttagct-ttcACAGATTTCAAATATTGCCGGGTATTCCCTGTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1045016 51 +   1314817 TTTGTACATTTAGCT-TTCACAGATTTCAAATATTACCGGGTATTCCCTGTA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6403664 51 -   6597006 TTTGTATATTTAGCT-TTCACAGATTTCAAGTATTGCCGGGAATTCCCTGTA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19637407 32 -  27850971 TTTCTATATTTAGCT-TTCAAACATTTCAAGCA-------------------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79081407 51 -  85426708 tttgtttgtttgtttatttatttattt-atttattttatttattttttttta
i canFam3.chr2                 C 0 I 3213
s dasNov3.JH570393               1701519 40 -   2296528 tctccACATTTTGTT-TTCAGACATTTAGGACA-----------TCCCTATA
i dasNov3.JH570393             I 2339 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=2408410.000000
s hg38.chr14_GL000009v2_random     14608 358 +    201709 CCAATTTAGGGTAAAGGAAAGCAATAGG------ACCTTC-CTAAGTTGGATCCATGCTGAGGAATCAAGACTACCATTTTG--------------------AAGTGATGTAGATTAgtcttttatccagagacagatcatggaaaagagacagtggatctttctaccttgttttaggtcatcagttttattccagtttagggaacaaaatttatgtcatccattaattg-aatt-ttaagttcag-cttcaggacagataatttgtgaggg--cacattattgtcaggctctgccaatatattgactgtcactatttgttataaacctcaag-gttagttttca-tTGAATATTTTATAGATTTAGACAGGTGGAGGCAGAAATAGGTAAC
s panTro5.chr9                  41688786 358 + 116767853 CAAATTTAGGGCAAAGGAAATCAATAGG------ACCTTC-CTAAGTTGGATCCATGCTGAGGAATCAAGACTGCCATTTTG--------------------AAGTGATGCAGATTAGACTTTTATCCAGAGACAGATCATGGAAAAGACACAGTGGATCTTTCTACCTTGTTTTAGGTCATCAGTTTTCTTCCAGTTTAGATAACAAAATTTATGTCATCCATTAATTG-AATT-TTAAGTTCAG-CTTCAGGACAGATAATTTATGAGGG--CAAAGTATTGTCAGGCTCTGCCAATATATTGACTGTCACTATTTGTTATAAAGCTCAAG-GTTAGTTTTCA-TTGAATATTTTATAGATTTAGACAGTTGGAGGCAGAAGTAGGTAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96032293 358 - 114479721 CAAATTTAGGGCAAAGGAAATCAACAGG------ACCTTC-CTAAGTTGGATCCATGCTGAGGAATCAAGACTGCCATTTTG--------------------AAGTGATGCAGATTAGACTTTCATCCAGAGACAGATCATGGAAAAGACACAGTGGATCTTTCTACCTTGTTTTAGGTCATCAGTTTTCTTCCAGTTTAGATAACAAAATTTATGTCATCCATTAATTG-AATT-GTAAGTTCAG-CTTCAGGACAGATAATTTATGAGGG--CAAAGTATTGTCAGGCTCTGCCAATATATTGACTGTCACTATTTGTTATAAAGCTCAAG-GTTAGTTTTCA-TTGAATATTTTATAGATTTAGACAGTTGGAGGCAGAAGTAGGTAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          109848 357 -    116138 CCAATTTAGGGCAAAGGAAAGCAATAGG------ACCTTC-CTAAGTTGGATCCATGCTGAGGAATCAAGACTGCCATTTTG--------------------AAGTGATGCAGATTTGTCTTTTATCCAGAGACAGATCATGGAAAAGAGACAGTGGATCTTTCTAACTTGTTTTAGGTCATCAGTTTTCTTCCAGTTTAGATAACAAAATTTATGTCATCCACTAATTG-AATT-TTAAGTTCAG-CTTCAGGACAGACAATTTGTGAGGG--CAAAGTATTGTCAGGCTCTGCCAATGTATTGAC-GTCACTATTTGTTATAAAGCTCAAG-GTTAGTTTTCA-CTGAATATTTTATAGATTTAGAGAGGTGGAGGCAGAAGTAGGTAAA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40795805 358 + 122973662 CCAATTTAGGGCAAAGGAAAGCAATAGG------ACCTTC-CTAAGTGGGTTCCATGCTGAGGAGTCCAGACTGCCATTTTG--------------------AAGTGCTGCAGATTAAtcttttaaccagagatagatcatggaaaagagacagtggatctttctaccttgttttaggtcatcagttttcttccagtttaggtaacaaaatttatgccatccattaattg-aatt-ttaagttcag-cttcaggacagataatttgtgaggg--taaattattgtcaggctttgccaatatattgactgtcaCTATTTCTTATAAAGCTCAAG-GTTAGTTTTCA-TTGAATATTTTATAGATTTAGACAGGTGGAGGCAGAAATAGGTAAC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111074448 358 - 111193037 CTGATTTAGGGCAAAGGAAAGCAATAGG------ACCTTC-CTCAGTGGGTTCCATGCTGAGGAATCAAGACTGCCATTTTG--------------------AAGTGAAGCAGATTAGTCTCTTAAGGAGAGATAGATCAAGGAAAAGAGACAGTGGATCTTTCTACCTTGTTTTAAGTCGTCAGTTTTCTTCCAGTTTAGGTAACAACATTTATGTCATCCATTAATTG-AATT-TTAAGCTCAG-CTTCAGGACAGATAATTTGTGCGTG--TAAATTACTGTCAGGCTCTGCCAATATATTGACTGTCACTATTTGTTATAAAGCTCAAG-GTCAGTTTTCA-TAGAATATTTTATAGATTTAGACAGATGGAGGCAGAAATAGGTAAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          344421 358 +    434444 CTGATTTAGGGCAAAGGAAAGCAATATG------ACCTTC-TTAAGTGGTTTCCTTGCTGAGGACTCAAGACTGCCATTTTG--------------------AAGTGATGCAGATTAGTCTTTTAACCAGAGGTAGATCATGGACAAGAGACAGTGGATCTGTCTACCTTGTTTTAGGTCATCGGTTTTCTTCCAGATTAGATAACAAAATGTATGTCACCCATTAACTG-AATT-TTAAGTTCAG-CTTCAGGAGAGATAATTTGTGAGGG--TAAATTATTGTCAGGCTCTGCCAACATATTGACTGTCACTATTTGTTATAGAGCTCAAG-GTCAGTTTTCA-TTGAATATTTTATAGATTTAGACAGGTGGAGGCAGAAATAGGTAAC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          391742 358 -    438202 CTGATTTAGGGCAAAGGAAAGCAATAGG------ACCTTC-CTAAGTGGTTTCCTTGCTGAGAACTCAAGACTGCCATTTTG--------------------AAGTGATGCAGATTAGTCTTTTAACCAGAGGTAGATCATGGACAAGAGACAGTGGATCTCTCTACCTTGTTTTAGATCATCGATTTTCTTCCAGATTAGGTAACAAAATGTATGTCATCCATTAATTG-AATT-TTAAGTTCAG-CTTCAGGAGAGATCATTTGTGAGGG--TAAATTATTGTCAGGCTCTGCCAACATATTGACTGTCACTATTTGTTATAAAGCTCAAG-GTCAGTTTTCA-TTGAATATTTTATAGATTTAGACAGGTGGAAGCAGAAATAGGTAAC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66441504 358 +  90373283 CTGATTTAGGGCAAAGGAAAGCAATAGG------ACCTTG-CTAAGTGGTTTCCTTGCTGAGAACTCAAGACTGCCATTTTG--------------------AAGTGATGCAGATTAGTCTTTTAACCAGAGGTAGATCATGGACAAGAGACAGTGGATCTCTCTATCTTGTTTTAGGTCATCGATTTTCTTCCAGATTAGGTAACAAAATGTATGTCATCCATTAATTG-AATT-TTAAGTTCAG-CTTCAGGAGAGATAATTTGTGAAGG--TAAATTATTGTCAGGCTCTGCCAACATATTGACTGTCACTATTTGTTATAGAGCTCATG-GTCAGTTTTCA-TTGAATATTCTATAGATTTATACAGGTGGAGGCAGAAATAGGTAAC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1491940 358 -   1547936 CTGATTTAGGGCAAAGGAAAGCAATAGG------ACCTTC-CTAAGTGGTTTCCTTGCTGAGAACTCAAGACTGCCGTTTTG--------------------AAGTGATGCAGATTAGTCTTTTAACCAGAGGTAGATCATGGACAAGAGACAGTGGATCTCTCTACCTTGTTTTAGGTCATCGATTTTCTTCCAGATTAGGTAACAAAATGTATGTCATCCATTAATTG-AATT-TTAAGTTCAG-CTTCAGGAGAGATAATTTGTGAGGG--TAAATTATTGTCAGGCTCTGCCAACATATTGACTGTCACTATTTGTTATAAAGCTCAAG-GTCAGTTTTCA-TTGAATATTTTATAGATTTAGACAGGTGGAAGCAGAAATAGGTAAC
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64628402 377 -  72162052 CTGTTTTAGGGCAAAGGAAAGCAATAGG------ACCTTC-CTAAGTAGTTTGCATGCCGAGGACTTTATACTGCCATGGTGTCACTTCACAACGGTGGTATAAATTCCTCAGATTAGTCTTTTAGGCAGAGATAGACTATGAACAAGAG--AGTGGATCTCTCTACCTTGTTTCAGGTCATCAGGTGTCTTCCAGTTTAGGTAACAAAAGTTATGTCATTCATTCACTG-AATT-TTAAGTTCAG-CTTCAGAACAGATCATTTGTGAGGGTATAAATTCTTGCCAGGCTCTGCTAA-ATACTGGGTGTCACTATTTGTTATGGACCTCATG-GTCAGTTTTCA-TTGAATATTTTATAGATTTAGACAGGTGGAGGCAGAAATAGGTCAC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1045067 378 +   1314817 CTGTTTTAGGGCAAAGGAAAGCAATAGG------ACCTTC-TTAAGTGGTTTGCATGCTGAGGAATTTATACTGCCATTGTGTCACTTCACAATGGCAGTATAAATTCCTCAGATTAGTCTTTTAAGCAGAGATAGATTATGAACAAGAG--AGTGGATCTCTCTACCTTGTTTTAGGTCATCAGGTGTCTTCCAGTTTAGGTAACAAAAGTTATGTCATTCATTAGTTG-AATT-TTAAGTTCAG-CTTCAGGACAGATCATTTGTGAGGGTATAAATTCTTGCCAGGCTCTGCTAATATATTGGGTGTCACTATTTGTTATAGACCTCGTG-GTCAGTTTTCA-TTGAATATTTTATAGATTTAGACAGGTGGAGGCAGAAGTAGGTAAT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6403715 358 -   6597006 CTGTTTTAGGGCAAAGGAAAGCAATAGG------ACCTTC-CTAAGTGGTTTGCATGCTGAGGAATTTATACTGCCATTGTG--------------------AAGTGACACAGATTAGTCTTTTAAGCAGAGATAGATTATGGACAAGAG--AGTGGATCTCTCTACCTTGTTTCAGGTCATCAGGTGTCTTCCAGTTTAGGTAACAAAAGTTATGTTGTTCATTAATTG-AATT-TTAAGCTCAG-CTTCAGGACAGATGATTTGTGAGGGTATAAATTATTGCCAGGCTCTGCTAATATATTGGGTGTCACTATTTGTTATGGACCTCATG-GTCAGTTTTCA-TTGAATATTTTGTAGATTTAGACAGGTGGAGACAGAAATAGGTAAC
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19637439 292 -  27850971 ---------------------CAATGGG------GCCTTC-TTAAATGGTTTCCATACTAAAAAACCAAGACTGCCATTC----------------------AAATGACACAAATTAGTTTTTGAACCAGAGATAGGTGATGGACAAAGGACATTTTATCTTTCTTCC-----------------------------TCAGGTAACAAAAGTTATGCCAGCCTTTAATTG-GATTATTTAGTTGAGTTTTCAGGACAG----TTTGTGAAGG--CAAATTATTCTTAGGCTTTGCCAGAATTTTGGTTATTACTATTGGTTATGGAACTGTGG-GTGAGTCTTCA-TTGAATATTTCATAGGTT------------GGGAGAAATTGGTAAC
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1701559 356 -   2296528 CTTTTTCAGAGTAAAGGGAAGGAAGGGGAGCAGTACTTTCACCTTGTTGATAAGGTGCTAAAGCACTAAGACTACCATTT----------------------ATGcc------attagtctttaaaccagggatagaccatggagaagggttattgtatctttcta-cttgttttaggtcatcaggtttgttccatttcaggcaacaaaagttaaatcagccatcaattatgatt-ttcaattcag-cacccag---gacttttggtgataa--caaattattcccagactttgccattattttggctgtcacttgttgttatggggtctaagtgtgagtcttcatttGAATATTTCATAGTTTGGGAGAGTTAGAATCAGAATTAACTAAC
i dasNov3.JH570393             C 0 C 0
e canFam3.chr2                  79081458 3213 -  85426708 I
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=62302.000000
s hg38.chr14_GL000009v2_random     14966 14 +    201709 TAAAATCTCTTTTT
s panTro5.chr9                  41689144 14 + 116767853 TAAAATCTATTTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96032651 14 - 114479721 TAAAATCTATTTTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          110205 14 -    116138 TAGAATCTATTTTT
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40796163 14 + 122973662 TAAAATCTATTTTT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111074806 14 - 111193037 TAAAATCTATTTTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          344779 11 +    434444 TAAAATC---TTTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          392100 11 -    438202 TAAAATC---TTTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66441862 14 +  90373283 TAAAATCTATTTTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1492298 11 -   1547936 TAAAATC---TTTT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64628779 14 -  72162052 TAAAGTAAAGTTTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1045445 14 +   1314817 TAAAATAAAGTTTT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6404073 14 -   6597006 TAAAATAAAGTTTT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19637731 14 -  27850971 TAAAACAGTTTTTT
i otoGar3.GL873538             C 0 I 315
e canFam3.chr2                  79081458 3213 -  85426708 I
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1701915  0 -   2296528 C

a score=25221.000000
s hg38.chr14_GL000009v2_random     14980 6 +    201709 AGAACA
s panTro5.chr9                  41689158 6 + 116767853 AGAACA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96032665 6 - 114479721 AGAACA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          110219 6 -    116138 AGAACA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40796177 6 + 122973662 ATAACA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111074820 6 - 111193037 AGAACA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          344790 6 +    434444 ACTACA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          392111 6 -    438202 ACTACA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66441876 6 +  90373283 AGAACA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1492309 6 -   1547936 ACTACA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64628793 6 -  72162052 AGAATA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1045459 6 +   1314817 AGAATA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6404087 6 -   6597006 AGAATA
i aotNan1.NW_018488791v1       C 0 C 0
e canFam3.chr2                  79081458 3213 -  85426708 I
e otoGar3.GL873538              19637745 315 -  27850971 I
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1701915 0 -   2296528 C

a score=275854.000000
s hg38.chr14_GL000009v2_random     14986 39 +    201709 GAGGACATATTTTAATTATATCAAGAATCGTAATTTAAT
s panTro5.chr9                  41689164 39 + 116767853 GAGGACATATTTTAATTATATCAAGAATCATAATTTAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96032671 39 - 114479721 GAGGACATATTTTAATTATATCAAGAATCATAATTTAAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          110225 39 -    116138 GAGGACATATTTTAATTATATCAAGAATCATAATTTAAT
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40796183 39 + 122973662 GAGGACATACTTTAATTATATCAAGAATCATAATTTAAT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111074826 39 - 111193037 GAGGCCATATTTTAATTGCATCAAGAATCATTATTTAAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          344796 39 +    434444 GAGGACATATTTTAATTATATCAAGAATCATTATTTAAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          392117 39 -    438202 GAGGACGTATTTTAATTATATCAAGAATCATTATTTAAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66441882 39 +  90373283 GAGGCCATATTTTAATTGTATCAAGAATCATTATTTAAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1492315 39 -   1547936 GAGGACGTATTTTAATTATATCAAGAATCATTATTTAAT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64628799 39 -  72162052 GAGGCCATATTTTAATTATATCAAGAAACGTTATTTAAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1045465 39 +   1314817 GAGGCCGTATTTTAATTATATCAAGAGACATTATTTAAT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6404093 39 -   6597006 GAGGCCATATTTTAATTATATCAAGAGACATTATTTAAT
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79084671 39 -  85426708 GAGGCAAAATTTTAATTATATCAAGAAACTTCATTTAAT
i canFam3.chr2                 I 3213 C 0
e otoGar3.GL873538              19637745 315 -  27850971 I
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1701915  0 -   2296528 C

a score=421376.000000
s hg38.chr14_GL000009v2_random     15025 86 +    201709 ATATAGATCACTGACTTTTCCCCAGATTATGTTTTCC-----TTTTTTTGAGGGGGAAGCTGGATATAAACTGGCAGTTA-AAA-----AAATTGTA
s panTro5.chr9                  41689203 86 + 116767853 ATATAGATCACTGACCTTTCCCCAGATTATGTTTTCC-----TTTTTTTGAGGGGGAAGCTGGATATAAACCGGCAGTTA-AAA-----AAATTGTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96032710 86 - 114479721 ATATAGATCACTGACCTTTCCCCAGATTATGTTTTCC-----TTTTTTTGAGGGGGAAGCTGGATATAAACCGGCAGTTA-AAA-----AAATTGTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          110264 85 -    116138 ATATAGATCACTGACCTTTCCCCAGATTATGTTTTCC------TTTTTTGAGGGGGAAGCTGGATATAAACCGGCAGTTA-AAA-----AAATTGTA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40796222 81 + 122973662 ATATAGATCACTGACCTTTCCCCAGATTGTGTTTTCC------TTTTTTGAGGGGGAAGCTGGATATAAACTGGCAGTT----------AAATTGTA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111074865 84 - 111193037 ATATGGATCACCGACCTTTCCCCAGATTATGTCTT--------TTGTTTGAGGGGGAAGCTGGATATAAACTGGCAATTATAAA-----AAATTGTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          344835 84 +    434444 ATGTAGATCACTGACC-TTCCCCAGGTTATGGTTTCC------TTTTTTGAGGGGGAAGCTGGATACAAACTGGCATTTA-AAA-----AAATTGTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          392156 85 -    438202 ATGTAGATCACTGACCTTTCCCCAGGTTATGGTTTCC------TTTTTTGAGGGGGAAGCTGGATATAAACTGGCATTTA-AAA-----AAATTGTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66441921 83 +  90373283 ATATGGATCACCGACCTTTCCCCAGATTATGTCTT--------TTGTTTGAGGGGGAAGCTGGATATAAACTGGCATTTA-AAA-----AAATTGTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1492354 85 -   1547936 ATGTAGATCACTGACCTTTCCCCAGGTTATGGTTTCC------TTTTTTGAGGGGGAAGCTGGATATAAACTGGCGTTTA-AAA-----AAATTGTA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64628838 91 -  72162052 ATACAGATAGCTGACCTTTCCCTATATTGTGTTTTTG-----TTCTTTGGAGAAGGAAGCTGGATTTGAACTAGCAGATA-AAAAAAGTAAAAAAAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1045504 86 +   1314817 ATACAGATAGCTGACCTTTCTCTATATTGTGTTTTTG-----TTTTTTGGAGAAGGAAGCTGGATAAGAACTAGCAGATA-AAA-----AAAAGTAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6404132 85 -   6597006 ATACAGATAGCTGACCTTTCCCCATATTGTGTTTTTG-----TTTTTTGGAGAAGGAAGCTGGATATGAACTAGCAGATA-AAA-----AAAAGT-A
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19638060 88 -  27850971 ATTTAGATAGCTGACCTTTCACCAGATTTTGTTTTGTTTTTGTGTTTTGGAAGGGTAACCTGGATATGAACCAGCAGATT---------TTTTTTTA
i otoGar3.GL873538             I 315 C 0
s canFam3.chr2                  79084710 33 -  85426708 ----TAACAGCTGAACTTTTACTTAATT---------------TTTTT---------------------------------AAA------------A
i canFam3.chr2                 C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1701915  0 -   2296528 C

a score=1388877.000000
s hg38.chr14_GL000009v2_random     15111 189 +    201709 AAGAAATCAACTTGCTCATTTTCATTGTGTATTTTTGCTC--TCAAGCATTTTGCATGAACTGTGTGT---GGATTCATTGCCTACATTGGATGATGAAGACTTGAGTGTTGCTACTAAGGTAAAGTGGTCTCTTGTAAAATTAATCTTCTCACTCTGGGTGTAGTTTTGCATAGTA-TTTACTTTTCAAATTTA
s panTro5.chr9                  41689289 188 + 116767853 AAGAAATCAACTTGCTCATTTTCATTGTGTATTTTTGCTC--TCAAGCATTTTGCATGAACTGTGTGT---GGATTCATTGCCTGCATTGGATGATGAAGTCTTGAGTGTTGCTACTAAGGTAAAGTGGTCTCTTGTAAAATTAATTTTCTCACTCTGAATGTAGTTTTGCAT-GTG-TTTACTTTTCAAATTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96032796 188 - 114479721 AAGAAATCAACTTGCTCATTTTCATTGTGTATTTTTGCTC--TCAAGCATTTTGCATGAACTGTGTGT---GGATTCATTGCCTGCATTGGATGATGAAGACTTGAGTGTTGCTACTAAGGTAAAGTGGTCTCTTGTAAAATTAATTTTCTCACTCTGAATGTAGTTTTGCAT-GTG-TTTACTTTTCAAATTTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          110349 188 -    116138 AAGAAATCAACTTGCTCATTTTCATTGTGTATTTTTGCTC--TCAAGCATTTTGCATGAAGTGTGTGT---GGATTCATTGCCTACATTGGATGATGAAGACTTGAGTGCTGCTAGTAAGGTAAAGTGGTCTCTTGTAAAATTAATTTTCTCACTCTGAATGTA-TTTTGCAA-GTGTTTTACTTTTCAAATTTA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40796303 189 + 122973662 AAGAAATCAACTTGCTCATTTTCATTGTGTATTTTTGCTC--TCAAGCATTTTCCATGAACTGTGTAT---GGATTCATTGCCTGCACCACATGACAAAGACTTGAGTGTTGCTACTAAGGTAAAGTGGTCTCTTGTAAAATTAATTTTCTCACTCTGAATGTAGTTTTGCATAGTA-TTTACTTTTGAAACTTA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111074949 189 - 111193037 AAGAAATCAACTTGCCCATTTTCATTGTGCGTTTTTGGTC--TCAAGCATTTTCCATGAACTGTGTGT---GGATTCGTTGCCTACATCGGATGACGAAGACATGAGTGTTGCTGCTAAGGTAAAGTGGTGTCTTGTAAAATTAATTTTCTCACTCTGAATCTAGTTTTGCACAGTA-TTTACTTTTCAAATTTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          344919 187 +    434444 AAGAAATCAACTTGCTCATTTTCATTGTACATTTTTGCTC--TCAAGCATTTTCCGTGATCTGTGTGT---AGATTCATTGCCTGCATCGGATGATGAAGACTTGAGTGTTGCTACTAAGGTAAAGTGGTCTCTTGTAAAATTA--TTTTTCACTCTGAATCCAGTTTTGCATAGTA-TTTACTTTTAAAACTTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          392241 187 -    438202 AAGAAATCAACTTGCTCATTTTCATTGTACATTTTTGCTC--TCAAGCATTTTCCGTGATCTGTGTGT---GGATTCATTGCCTGCATCGGATGATGAAGACTTGAGTGTTTCTACTAAGGTAAAGTAGTCTCTTGTAAAATTA--TTTTTCACTCTGAATCCAGTTTTGCATAGTA-TTTACTTTCAAAACTTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66442004 187 +  90373283 AAGAAATCAACTTGCTCATTTTCATTGTACATTTTTGCTC--TCAAGCATTTTCCGTGATCTGTGTGT---GGATTTATTGCCTGCATCGGATGATGAAGACTTGAGTGTTGCTACTAAGGTAAAGTGATCTCTTGTAAAATTA--TTTTTCACTCTGAATCCAGTTTTGCATAGTA-TTTACTTTTAAAACTTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1492439 187 -   1547936 AAGAAATCAACTTGCTCATTTTCATTGTACATTTTTGCTC--TCAAGCATTTTCCGTGATCTGTGTGT---GGATTCATTGCCTGCATCGGATGATGAAGACTTGAGTGTTGCTACTAAGGTAAAGTAGTCTCTTGTAAAATTA--TTTTTCACTCTGAATCCAGTTTTGCATAGTA-TTTACTTTTAAAACTTA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64628929 189 -  72162052 AAAAAATCATCTTGCTCATTTTCATTGTGTATTTTTGCTC--TAAAGCATTTTCCAAGACCTGTATGT---GGATTCACACACTAAACCAGAGGATGAAGGCTTGACAGTTACTACCAAGGTAAAGTGGCCTCTTGTTACATTAATTTTCTCACTCTGAATCTAGTTTTACATAGTA-TTTACTTTTAAAATTTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1045590 189 +   1314817 AAAAAATCATCTTGCTCATTTTCATTGTGTATTTTTGCTC--TAAAGCATTTTCCAAGAACTGTGTGT---GGATTCACGCACTAAACCAGAAGATGAAGACTTGACAGTTGCTACCAAGGTAAAGTGGCCTCTTGTTAAATTAATTTTCTCACTCTGAATCTAGTTTTACATAGTA-TTTACTTTTAAAATTTA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6404217 188 -   6597006 AAAAAATCATCTTGCTCATTTTCATTGTGTATTTTTGCTC--TAAAGCA-TTTCCAAGGCCTGTGTAT---GGATTCGTCCACTAAACCAGAAGACAAAGTCTTGACAGTTGCTACCAAGGTAAAGTGGCCGCTTGTTAAATTAATTTTCTCACTCTGAATCTAGTTTTACATAGTA-TTTACCTTTAAAATTGA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19638148 192 -  27850971 AGTAAACGAACTTGCTCATTTTTGATGTATGTTTTTGTGC--TAAAGGCTTTCTGACAAACCAGGTATTGATGATTCATGGCCTACCTCTGATGACGAAGACTTCGATTTTGATACCAAGGTATATTAGTCTCTTGTGAAATTAATTTTCTGACTTTGAATATGGttttttataata-tttactttttaaattta
i otoGar3.GL873538             C 0 I 42
s canFam3.chr2                  79084743 185 -  85426708 AAGAAATGAACTTG----TATTTGTTTTATATTTTTGCTC--TAAAGTCTTTCCAGTAAACCAGATACTGATGATTCGTGGCCTTCATCA---GATGGAGACTTAAGTTTTGGTACCAAGGTAAAGTACTCTCTTGTAAAATTAATTTTGCTGCTCTGAATTTAGTGTTGCATATTA-TTTACTCTTAAAATATA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1701915 194 -   2296528 AAGAGTTTAACTCACTTGTTTTTGTTGTATATTTTTTCTCTTTAAAGGCTTTCTAACAAACCTGGCATTGATGATTCATGGCCTACCTCAGATGATGAAGACTTAGATTTTGATAACAAGGTGAAGTGCTCACAAATGAAATTAATTTTCCTACTCTGAATTTAGTTTGATGATGTA-TTTACTCCTGTAATTTG
i dasNov3.JH570393             C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=131214.000000
s hg38.chr14_GL000009v2_random     15300 18 +    201709 GCAGTGGTTTACCTATCA
s panTro5.chr9                  41689477 18 + 116767853 GCAGTGGTTTACCTATCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96032984 18 - 114479721 GCAGTGGTTTACCTATCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          110537 18 -    116138 GCAGTGGTTCACCTATAA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40796492 18 + 122973662 GCAGTGGTATACCTATCA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111075138 18 - 111193037 GCAGTGGTTTACCTGTCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345106 18 +    434444 GCAGTAGTATACCTATCA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          392428 18 -    438202 GCAGTGGTATACCTATCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66442191 18 +  90373283 GCAGTGGTATACCTATCA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1492626 18 -   1547936 GCAGTGGTATACCTATCA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64629118 17 -  72162052 GCAGTGGT-TACCTATCA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1045779 17 +   1314817 GCAGTGGT-TACCTATCA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6404405 17 -   6597006 GCAGTGGT-TACCTATCA
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79084928 18 -  85426708 ACAGTGGCTTGCCTCTTG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1702109 18 -   2296528 GCAGTGGTCTGCCTATCA
i dasNov3.JH570393             C 0 C 0
e otoGar3.GL873538              19638340 42 -  27850971 I
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=455126.000000
s hg38.chr14_GL000009v2_random     15318 58 +    201709 TTGTTTTATGGTGGTAATGGAAAGCTGGTCAGAGAAAAACAT-------ACACATGGCTAGTTGA
s panTro5.chr9                  41689495 58 + 116767853 TTGTTTTATGGTGGTAATGGAAAGTTGCTCAGAGAAAAACAT-------ACATACGACTAGTTGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033002 58 - 114479721 TTGTTTTATGGTGGTAATGGAAAGTTGCTCAGAGAAAAACAT-------ACATATGACTAGTTGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          110555 58 -    116138 TTGTTTTATGGTGGTAATGGAAAGTTGCTCAGAGAAAAACAT-------ACATATGGCTAGTTGA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40796510 58 + 122973662 TTGTTTTATGGTGGTAATGGAAAGTTGGTCAGAGAAAAACAT-------ACATATGGCTAGTTGA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111075156 58 - 111193037 TTGTTTTATGATGATAATGGAAAGTTGGTCAGAGAAAAACAC-------GCATGTGGCTAGTTGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345124 58 +    434444 TAGTTTTATGGTGGTAATGGAAAGTTGGTCAGAGAAAAACAT-------ACATGTGGCTAGTTGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          392446 58 -    438202 TAGTTTTATGGTGGTAATGGAAAGTTGGTCAGAGAAAAACAT-------ACATGTAGCTAGTTGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66442209 58 +  90373283 TAGTTTTATGGTGGTAATGGAAAGTTGGTCAGAGAAAAACAT-------ACATGTAGCTAGTTGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1492644 58 -   1547936 TAGTTTTATGGTGGTAATGGAAAGTTGGTCAGAGAAAAACAT-------ACATGTAGCTAGTTGA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64629135 60 -  72162052 TTGTTTTATGTTGGTAATGGAAAGTTGGTCAGAGAAAAACGT-----AGACATATGGCTAGTTGA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1045796 60 +   1314817 TTGTTTTATGTTGGTAATGGAAAGTTGGTCAGAGAAAAACAT-----AGACATACAGCTAGTTGA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6404422 60 -   6597006 TTGTTTTGTGTTGGTAATGGAAAGTTGGTCAGAGAAAAACAT-----AGACATATGGCTAGTTGA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19638382 62 -  27850971 TTTTTTTATGTTTATAATAGAAA---GGTAGGAGGAAATCATGTTATGTAATTATCACTAATTGA
i otoGar3.GL873538             I 42 C 0
s canFam3.chr2                  79084946 60 -  85426708 TCATTTTATGTTTGTAATGGAAGGTTGTTCAG-----AACATTTTAGAGAAATCTGGCAAGCTGA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1702127 65 -   2296528 TTGTTTTATGTTTGTAATGGGGAGTTGGTCAGAGAAAACCATTTTACAGATATGTGACTATTGGa
i dasNov3.JH570393             C 0 I 23
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=37695.000000
s hg38.chr14_GL000009v2_random     15376 11 +    201709 TTCAAAAAATG
s panTro5.chr9                  41689553 11 + 116767853 TTCAATAAATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033060 11 - 114479721 TTCAAAAAATG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          110613 11 -    116138 TTCAAAAAATG
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40796568 11 + 122973662 TTCAAAAAATT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111075214 11 - 111193037 TTCAAAAAATT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345182 11 +    434444 TTCAAAACATT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          392504 11 -    438202 TTCAAAACATT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66442267 11 +  90373283 TTCAAAACATT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1492702 11 -   1547936 TTCAAAACATT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64629195 11 -  72162052 TTAAAGGAAGT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1045856 11 +   1314817 TTAAAGCAATT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6404482 11 -   6597006 TTAAAGTAATT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19638444  2 -  27850971 TT---------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79085006  5 -  85426708 ------AAATT
i canFam3.chr2                 C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1702192 23 -   2296528 I

a score=2600214.000000
s hg38.chr14_GL000009v2_random     15387 403 +    201709 TGTTTAACTTTGGTAACTAAT-AAAGATTGGTAAGTACTGTGACAGGGTGGGAGCTG-AAAA-ATAAATGAACTGGAAAATAAGTAGTCACAGGAAAA---TCACATTAGGAAATGCTTTCTC-CA-----------------ATAGAGGAAATA-TGAACTTTGGTTAAAGTTTATTTGGATAAATACTAATACTTTGACTTTTAAATCATACGAGTGTGACTTTCTTAATATTTATTCCTGTAT-AAACCTTCAGTGGATCAAATTG--TTTG---CAGTAATCATGGAATCCTCCTGGTAATTTTTAGTGG-CAGAAATGTTCAGCACATAGCATA-TAGC-TTTTG--TTCTT----------GGAAAC----------------TTATCAT-TTTGGTGTCATATAGTTTT---TAGGAGAG-A-TTGTTTCTCTACTTATATTATTGGTTCTGTAGTGAGACTAA
s panTro5.chr9                  41689564 403 + 116767853 TGTTTAACTTTGGTAACTAAC-AGAGATTGATAAGTACTGTGACAGGGTGGGAGCTG-AAAA-ATAAATGAACTGGAAAATAAGTAGTCACAGGAAAA---TCACATTAGGAAATGCTTTCTC-CA-----------------ATAGAGGAAATA-TGAAATTTGGTTAAGGTTTATTTGGATAAATACTAATACTTTGACTTTTAAATCGTACGAGTGTGACTTTCTTAATATTTATGCCTGTAT-AAATCTTCAGTGAATCAAATTA--TTTG---CAGTAATCATGGAATCTTCCTGATAATCTTTAGTGG-CAAAAATGTTCAGCACATAGCATA-TAGC-TTTTG--TTCCT----------GGAAAC----------------TTATTAT-TTTGGTGTCATATAGTTTT---TAGGGGAA-A-TTGTTTCTCTACTTATATTATTGGTTCTGTAGTGAGACTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033071 403 - 114479721 TGTTTAACTTTGGTAACTAAC-AGAGATTGATAAGTACTGTGACAGGGTGGGAGCTG-AAAA-ATAAATGAACTGGAAAATAAGTAGTCACAGGAAAA---TCACATTAGGAAATGCTTTCTC-CA-----------------ATAGAGGAAATA-TGAAATTTGGTTAAGGTTTATTTGGATAAATACTAATACTTTGACTTTTAAATCGTACGAGTGTGACTTTCTTAATATTTATGCCTGTAT-AAATCTTCAGTGAATCAAATTA--TTTG---CAGTAATCATGGAATCTTCCTGATAATCTTTAGTGG-CAAAAATGTTCAGCACATAGCATA-TAGC-TTTTG--TTCCT----------GGAAAC----------------TTATTAT-TTTGGTGTCATATAGTTTT---TAGGAGAA-A-TTGTTTCTCTACTTATATTATTGGTTCTGTAGTGAGACTAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          110624 402 -    116138 TGTTTAACTTTGGTAACTAAC-AGAGATTGATAAGTACTGTGACAGGGTGGGAGCTG-AAAA-ATAAATGAACTGGAAAATAAGTAGTTGCAGGAAAA---TCACATTAGGAAATGCTTTCTC-CA-----------------ATAGAGGAAATA-TGAAATTTGGTTAAGGTTTATTTGGATAAATACTAATACTTTGACTTTTAAATCATACAAGTGTGACTTTCTTAATATTTATGCTTGTAT-AAATCTTCAATGGATC-AATTA--TTTG---CAGTAATCATGGAATCTTCCTGGTAATTTTTAGTGG-CAAAAATGTTCAGCACATAGCATA-TAGC-TTTTG--TTCTT----------GGAAAC----------------TTATTAT-TTTGGCGTGATATAGTTTT---TAGGAGAA-A-TTGTTTCTCTACTTATATTATTGGTTCTGTAGTGAGACTAA
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40796579 404 + 122973662 TGTTTAACTTTGGTAACTAAC-AAAGATTGATAAGTACTGTGACACGGTGGGAGCTGAAAAA-AAAAATGAACTGTAAAATAAGTAGTGACAGGAAAA---TCACATTAGGAAATGCTTTCTC-CA-----------------GTAGAGGAAATA-CGAAATTTGGTTAAGTTTTATTTGGATAAATACTAACACTTTGACTTCTAAATCATATGAGTGTGACTTTCTTAATATTTGTGCCTCTAT-AAATCTTCAGTGGATCAAATTA--TTTA---CAGTAATCATGGAATCCTCCTGGTAATTTTTAGTGG-CAAAAATGTTCAGCACATAGCATA-TAGC-TTTTG--TTCTT----------GGAAAC----------------TTATTGT-TTTGGTACCCTATAGTTTT---TAGGAGAG-A-TTGTTTCTCTACTTATATTATTGGTTCTGTAGTGAGACTAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111075225 387 - 111193037 TGTTTATCTTTGGTAACTAAC-AAAAATTGACAAGTACTGTGACAGGGTGGGAGCTG-----------TGAACTGGAAAATAAGTAGTGACAGGAAAG---TTGCATTAGTAAATGCTTTCCC-TG-----------------ATAGAGGAAATA-TGAAATTTGGTTAAGGTTTATTTGGATAAATAGTAACACTTTGACTTTTTAGTCATACAAGTGTGACTTTCATACTATTTATGCCTCTAT-AAATCTTCAGTGT-TCAAATGA--TTTG---CAGTAATCATGGACCCCCTCTGGTACTTTTTGGTGG-TGAAAATGTCCAGGACATAGCATA-GAGC-TTTTT----CTT----------GGAAAC----------------TTATTAT-TTTGATATCATATAGTTTG---TAGGGGAG-A-TTATTTCTCTACCTATATTA----TTCTGTAGTGTGACTAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345193 401 +    434444 TGTTTAACTTTGGTAACTAAC-AAAGATTGATAAGTCCTGTGACAGGGTGTGAGCTG-AAAA---AAATGAACTGGAAAGTAAGTAGTGACAGGAAAA---TCAAATTAGGAAATGCTTTCTC-CA-----------------ATAGAGGAAACA-TGAAATTTGGTTAAGGTTTATTTGGATAAATACTAACACTTTGATTTTTAAATCATACGAGAGTGACTTTCATAATATTTATGCCTGTAT-AAATCTTCAGTGGATCAAATTA--TTTG---CAGTAATCATGGACTCCCCCAGG-ACGTTTTAGTTG-CAAAATTGTTGAGCACATAGCATA-GAGC-TTTTT-TTCCTT----------GGAAAC----------------TTACAAT-TTTGGTATCATACAGTTTT---TAGGAGAG-A-TTGTTTCTCTACTTATATTATTGGTTCTGTAATGAGACTAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          392515 401 -    438202 TGTTTAACTTTGGTAACTAAC-AAAGATTGATAAGTCCTGTGACAGGGTGTGAGCTG-AAAA---AAATGAACCGGAAAGTAAGTAGTGACAGGAAAA---TCACATTAGGAAATGCTTTCTC-CA-----------------ATAGAGGAAACA-TGAAATTTGGTTAAGGTTTATTTGGATAAATAC-AGCACTTTGATTTTTAAATCATATGAGAGTGACTTTCATAATATTTATGCCTGTAT-AAATCTTCAGTGGATCAAATTA--TTTG---CAGTAATCATGGACTCCCCCAGG-ACGTTTTAGTTG-CAAAATTGTTGAGCACATAGCATA-GAGC-TTTTTTTTTCTT----------GGAAAC----------------TTACAAT-TTTGGTGTCATACAGTTTT---TAGGAGAG-A-TTGTTTCTCTACTTATATTATTGGTTCTGTAATGAGACTAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66442278 400 +  90373283 TGTTTAACTTTGGTAACTAAC-AAAGATTGATAAGTCCTGTGACAGGGTGTGAGCTG-AAGA---AAATGAACTGGAAAGTAAATAGTGACAGAAAAA---TCACATTAGGAAATGCTTTCTC-CA-----------------ATAGAGGAAACA-TGAAATTTGGTTAAGGTTTATTTGGATAAATAC-AACACTTTGATTTTTAAATCATATGAGAGTGACTTTCATAATATTTATGCCTGTAT-AAATCTTCAGTGGATCAAATTA--TTTG---CAGTAATCATGGACTCCCCCAGG-ACCTTTTAGTTG-CAAAATTGTTGAGCACATAGCATA-GAGC-TTTTT-TTTCTT----------GGAAAC----------------TTACAAT-TTTGGTATCATACAGTTTT---TAGGAGAG-A-TTGTTTCTCTACTTATATTGTTGGTTCTGTAATGAGACTAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1492713 401 -   1547936 TGTTTAACTTTGGTAACTAAC-AAAGATTGATAAGTCCTGTGACAGGGTGTGAGCTG-AAAA---AAGTGAACCGGAAAGTAAGTAGTGACAGGAAAA---TCACATTAGGAAATGCTTTCTC-CA-----------------ATAGAGGAAACA-TGAAATTTGGTTAAGGTTTATTTGGATAAATAC-AGCACTTTGATTTTTAAATCATATGAGAGTGACTTTCATAATATTTATGCCTGTAT-AAATCTTCAGTGGATCAAATTA--TTTG---CAGTAATCATGGACTCCCCCAGG-ACGTTTTAGTTG-CAAAATTGTTGAGCACATAGCATA-GAGCTTTTTT-TTTCTT----------GGAAAC----------------TTACAAT-TTTGGTTTCATACAGTTTT---TAGGAGAG-A-TTGTTTCTCTACTTATATTATTGGTTCTGTAATGAGACTAA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64629206 394 -  72162052 TGCTTAACTTTGGTAACTAATGAAAGATTGATAAGTGCTGTGACAGGGTTGCAGCTG-AAAC---AATT----TGGAAAATACGTAG----AGGAAAA---CCACATTAGGAAACGCTTTCCT-TA-----------------GTAGAGGAAATA-TAAAATTTGGTTAAGTTTTAGTTGGACAAATATGAATACTTTGACTTTTAAATCATACTTGTGTGAGTTTCATAATATTTATGCCTGTAT-AAATCTTCAGGGGATCAAATGA--CTTG---TAGTAATCATGGAATCTCCCTGGTACCTTTCAGTTG-CAAATCCGTACAGCACATAGCATA-TAAC-TTTTT--TTCTT----------GGACAC----------------TTATTAT-TTTGGTATCATGTATTTTT---TAGGAGAG-A-TTATTACTCTGCTTATATTATTGGCACCATAGGAAGACTAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1045867 398 +   1314817 TGCTTAACTTTGGTAACTAACAAAAGATTGATAAGTGCTGTGACAGGGTGGAGGCTG-AAAA---AAATAAACCGGAAAATACATAG----AGGAAAA---CCACATTAGGAAATGCTTTCCT-TA-----------------GTAGAGGAAATA-TAAAATTTGGTTAAGTTTTATTTGGACAAATATTAATACTTTGCCTTTTAAATCATACTTGTGTGACTTTCATAATATTTATGCCTGTAT-AAATCTTCAGTGGATCAAATGA--CTTG---TAGTAATCATGGAATCTCCCTGGTACCTTTTAGTTA-CTAGCCTGTACAGCACATAGCATA-TAGC-TTTTT--TTCTT----------GGACAC----------------TTATTAT-TTTGGTATCATGTAGTTTT---TAGGAGAG-A-TTATTTCTCTACTTATATTATTGGCACCATAGGGAAACTAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6404493 396 -   6597006 TGCTTAACTTTGGCAACTAACAAAAGATTGATAACTGCTGTGACAGGGTGGCAGCTG-AAAA---AAATAAACTGGAAAATACATAG----AGGAAAA---CCACATTAGGAAATGCTTTCCT-TA-----------------GTAGAGGAAATT-TAAAATTTGGTTAAGTTTTATTTGGACAAATATTAATACTTTGACTTTTAAATCACACTTGTGTGACTTTCGTAATATTTATGCCTGTAT-AAATCTTCAGTGGATCAAATGA--CTTG---TAGTAATCATGGAATCTCCCTG--ACCTTTTAGTTG-CAAATCTGTACAGCACATAGCATA-TAGC-TTTTT--TTCTT----------GGACAC----------------TTATTAT-TTTGGTATCATGTAGTTTT---TAGGCGAG-A-TTATTTCTCTACTTATATTATTGGCACCATAGGGAAACTAA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19638446 414 -  27850971 TCTTTTACTTTG-------AC-AAAGATTGGTAAATACTTTGATGGGATGG--GCTA-AAAAAAAGAATGGGCTAGAAAATGCGCAGTAATAGGAAAAGATTTACAT--ATAAAT-CTTTTTA-CATACACACATATATAAATATAGAGGAAATATTGAAATTTGGTCAAGGTTTACTTGTGTAAATTTTCTTACTGTGATTTTTAAGTGATACTGACATGAGTTTTATAATATTTATGCCTAAAT-GAATATTTAATGGATCTAATTA--CTTA---TAGTAATCATGTAATCTCCCTGGTGCTTTCCTCTCC-CAAA-CTGTGCAGCACAGAACATAGTTTC-TTTTT--TTCTT----------GGACAC----------------CTTTTATATTTGGTATCATACAGTTTT---TAGGAGAGAA-CTTTCTCTCTGTTTTTATTCTTGGTTCTGTAAT-AGTTTAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79085011 361 -  85426708 TTTCT---TTTTTTTATTTTT-GTAAATCGGTGA------------------------AAAA---ATATATGCTCGAAA-TGTATAATGACAGCAAAC---TATTATTGGGAAAAGCTTTCCCATA-----------------ATGGCGGAAAAA-TGACATTTGGTCAAGGATCAG------AATTCTTACTGTTGTGAGTTTTAAATTATACTAAtatttgtt------tgtttatttatttat-ttatttCTA-------ACATTACTTTTA---TAATACTCATG---CCTAACTGA-AATCTTTAGTGGATCCAATTAT-------------TG-TAGT-TTTTT--TTCTT----------GGATACCTTTTTTGTTGGATATTTTTTAT-CTTAGTAGCATATAATTTTACCAAAGAGGA-C-TGATTTCTCTATTTCTATCCTTTGTGTTACATTTAGACTAA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1702215 396 -   2296528 TTTTTCACTTTGGTAGAAACT-GAAGATGGGGTA-------------GTGAAAGCCA-GAAAAAAAAAAGGACAGGAAAACACACAGTAACAAGAAAA---TTATATTGAGAAAAGTTTTCCTACA-----------------ATGGAGGAAATA-TGAAGTATGGTCAAGGAT-------AGAAAAACT--TACTGTTACTTTTAAAGCATACTAATATGACTTATATAATACTCATGATTAATTGAAATCTTTAATGGATCCAACCA--CTTATTTTAATAATCATGGAATCTCCCCAGTGCCTTGCAGTTC-CTAAACTATACAGCACATACCATA-TAGT-TTTTG--TTTTTTTTTCCCCACGGGCCC----------------TTTTTAT-TTTGGTATCACAT--TTTT---TAGGAGAG-AGCTTTTTCTCCATTTCCATCCTTGGTTCTTTATTTAGATTAG
i dasNov3.JH570393             I 23 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=45296.000000
s hg38.chr14_GL000009v2_random     15790 11 +    201709 AAAAGTATTAA
s panTro5.chr9                  41689967 10 + 116767853 AAAA-tattaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033474 10 - 114479721 AAAA-tattaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          111026  9 -    116138 AAA--tattaa
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40796983 10 + 122973662 ACAA-TATTAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111075612 11 - 111193037 AATAATATTAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345594 11 +    434444 AATAGTATTAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          392916 11 -    438202 AATAGTATTAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66442678 11 +  90373283 AATAGtattaa
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493114 11 -   1547936 AATAGTATTAA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64629600 11 -  72162052 AATAATATTTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1046265 11 +   1314817 AATAATATTta
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6404889 11 -   6597006 AATAAtattaa
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19638860  8 -  27850971 AA---TATTAG
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1702611 11 -   2296528 AACAATATTAG
i dasNov3.JH570393             C 0 C 0
e canFam3.chr2                  79085372  0 -  85426708 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M

a score=279200.000000
s hg38.chr14_GL000009v2_random     15801 52 +    201709 AAGTTGTAGaaaaa--tagctgagtttggtggtgtacacctgtagtccctgcta
s panTro5.chr9                  41689977 52 + 116767853 aaattgtcaaaaaa--tagctgagtttggtggtgtacccctgtagtcctcacta
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033484 52 - 114479721 aaattgtcgaaaaa--tagctgagtttggtggtgtacccctgtagtcctcacta
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          111035 52 -    116138 aaattgtagaaaaa--tagctgagtttggtggtctacccctgtagtccctgcta
i gorGor5.CYUI01000530v1       C 0 C 0
s nomLeu3.chr1a                 40796993 52 + 122973662 AAATTGTAGaaaaa--tagctgagtgtggtggtgtacacctgtagtccctgcta
i nomLeu3.chr1a                C 0 M 100
s macFas5.chr13                111075623 52 - 111193037 AAATTGTAGAAAAA--Tggctgagtgtggtggtatacacctgtggtccctgctg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345605 54 +    434444 AAATTGCAGAaaaaatcacttgagtgtggcggtgtagacttgtggtggttgcta
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          392927 54 -    438202 AAATTGCAGAAAAAATCACTTgagtgtggtggtgtagacttgtggtccctgcta
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66442689 54 +  90373283 aaattgcaggaaaaatcacttgaatgtggtggtgtagacttgtggtccccgcta
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493125 54 -   1547936 AAATTGCAGAAAAAATCACTTgagtgtggtggtgtagacttgtggtccctgcta
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64629611 52 -  72162052 AAATTGTAGAAAAA--TAgctgagtgttgtggtgtatgcctgtagtccctgcta
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1046276 52 +   1314817 aaattgtagaaaaa--tggctgggtattgtggtgtatgcctgtagtccctgcta
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6404900 52 -   6597006 aagttgtagaaaaa--tagctgggtgttgtggtgtatgcctgtagtccctgcta
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19638868 51 -  27850971 AAATTGTGAGAATT--TATTTgggcatggtagcttatgcctatag-cccagctc
i otoGar3.GL873538             C 0 C 0
e canFam3.chr2                  79085372  0 -  85426708 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1702622  0 -   2296528 C

a score=395098.000000
s hg38.chr14_GL000009v2_random     15853 75 +    201709 cttgggagtttgagacagtaagattgcttgaacacaggagtttgagAACAGCCTGGGTAACATTG--------TATCTGATTT
s panTro5.chr9                  41690029 75 + 116767853 cttgggagtttgaggtgggaagattgcttgaacccaggagtttgagaatagcctgggcaacattg--------tgTCTGATTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033536 75 - 114479721 cttgggagtttgaggcgggaagattgcttgaacccaggagtttgagaatagcctgggcaacattg--------tgTCTGATTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          111087 75 -    116138 cttgggagtttgaggcaggaagattgcttgaacccaggagtttgagaacagcctgggcaatatTG--------TATCTGATTG
i gorGor5.CYUI01000530v1       C 0 C 0
s macFas5.chr13                111075675 83 - 111193037 cttgggagtttgaagcaggaagattgcttgagcccaggagtttgagaacggcctgggcaacataacaagaatgtatctgattt
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345659 81 +    434444 cttggaagtttgagtcaggaagattgcttgagcccaggagtttgagaaaagcctgggcaacataacaagac--tatctgtctt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          392981 81 -    438202 cttggaaatttgaggcaggaagattgcttgagcccaggagtttgagaaaagcctgggcaacataacaggac--tatctgtctt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66442743 81 +  90373283 cttggaaatttgaggcaggaagattgcttgagcccaggagtttgagaagagcctgggcaacataacaagac--tatctgtctt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493179 81 -   1547936 cttggaaatttgaggcaggaagattccttgagcccaggagtttgagaaaagcctgggcaacataacaagac--tatctgtctt
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64629663 81 -  72162052 cttgcgagtttgaagcaggaggattgcttgagtccaggagtttgagaacagccttggtaacataacaaggc--TATCTAATTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1046328 81 +   1314817 cttgcaagtttgaggcaggaggattgcttgagtccaggagtttgagaacagccttgttaacataacaagac--AATCTAATTT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6404952 81 -   6597006 cttgcgagtttgaggcaggaggattgcttgagtccaggagtttgagaacagccttggtaacatagcaagac--tatctaattt
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19638919 79 -  27850971 ctagggaaactgaggtgagaggatcacttgaggtcaggagttagagattagcatgggcaacatagtgagac----cctgtctc
i otoGar3.GL873538             C 0 C 0
e canFam3.chr2                  79085372  0 -  85426708 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1702622  0 -   2296528 C
e nomLeu3.chr1a                 40797045 100 + 122973662 M

a score=46790.000000
s hg38.chr14_GL000009v2_random     15928  8 +    201709 AAAAAT----------AT
s panTro5.chr9                  41690104  8 + 116767853 AAAAAT----------AT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033611  8 - 114479721 AAAAAT----------AT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          111162  8 -    116138 AAAAAT----------AT
i gorGor5.CYUI01000530v1       C 0 C 0
s macFas5.chr13                111075758  8 - 111193037 aaaaat----------at
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345740  8 +    434444 aaaaaT----------AT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          393062  8 -    438202 aaaaaT----------AT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66442824  8 +  90373283 aaaaaT----------AT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493260  8 -   1547936 aaaaaT----------AT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64629744  8 -  72162052 AAAAAT----------AT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1046409  8 +   1314817 AAAAAT----------AT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6405033  8 -   6597006 aaaaat----------at
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19638998 18 -  27850971 aaaaaggagaagaaaaaG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79085372  8 -  85426708 AATAAT----------AG
i canFam3.chr2                 C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1702622  0 -   2296528 C
e nomLeu3.chr1a                 40797045 100 + 122973662 M

a score=1241204.000000
s hg38.chr14_GL000009v2_random     15936 204 +    201709 AAATTGTGGAAATGTAGAAATTTAAATTTATGTTCTCAAGATTTGTATTGCAAAGGGATTTTTATGTGATTTATGAGTTG-TCCATGAAGAGTTTATATAAAACACTTCATCTAATTGAATAACATGTATTTTCCTGCAAATAAC---CAGTTCTAGAAGCAGAGACTCTTAATACCAATATGGTAAGTC-TTTATCATCATAATTTTG
s panTro5.chr9                  41690112 204 + 116767853 AAACTGTGGAAATGTAGAAATTTAAATTTATGTTATCAAGATTTGTATTGCAAAGGGATTTTTGTGTGGTTTATGAGTTG-TCCATGAAGAGTTTATATAAAACACTTCATCTAATTGAATAACATGTATTTTGCTGCAAATAAC---CAGTTCTAGAAGCAGAGATTCTTAATACCAATATGGTAAGAC-TTTATCATCATAATTTTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033619 204 - 114479721 AAACTGTGGAAATGTAGAAATTTAAATTTATGTTATCAAGATTTGTATTGCAAAGGGATTTTTGTGTGGTTTATGAGTTG-TCCATGAAGAGTTTATATAAAACACTTCATCTAATTGAATAACATGTATTTTGCTGCAAATAAC---CAGTTCTAGAAGCAGAGATTCTTAATACCAATATGGTAAGAC-TTTATCATCATGATTTTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          111170 203 -    116138 AAATTGTGGAAATGTAGAAATTTAAATTTATGTTCTCAAGATTTGTATTGCAAAGGGATTTTTGTGTGGTTTATGAGTTG-TCCATGAAGAGTTTATAT-AAACACTTCATCTAATTGAATAACATGTATTTTGCTGCAAATAAC---CAGTTCTAGATGCAGAGACTCTTAATACCAATATGGTAGGAC-TTTATCATCATAATTTTG
i gorGor5.CYUI01000530v1       C 0 C 0
s macFas5.chr13                111075766 202 - 111193037 aaaTTATGGAAATGTAGACATTTAAATTTATGTTCTCAAAATTTGTATTGCAAAGGCATTTTTGTGTGTTTTATGAGTTG-TCCATGAAAAGTTTATATAAAACACTTCATCTAATTGAATAACA--TATTTTGCTGCAAATAAC---CAGTTCCAGAAGCAGAGACTCTTAATACCAATATAGTAAGAC-TTTAACATCATAATTTTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345748 205 +    434444 AAATTGTGGAAATGTAAAAATTTAAATTTATGCTCTCAAAATTTGTATCGCAAAGGGATTTTTGTGTGTTTTATAAGTTG-TCCATGAAGAGTTTATATAAAACACTTCATCTAATTGAATAACATGTATTTTGCTGCAAATAAA---CAGTTCTAGAAGCAGAGACTTGTAATACCAATATGGTAAGACTTTTAACATCATAATTTTG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          393070 205 -    438202 AAATTGTGGAAATGTAAAAATTTAAATTTATGCTCTCAAAATTTGTATCGCAAAGGGATTTTTGTGTGTTTTATAAGTTG-TCCATGAAGAGTTTATATAAAACACTTCATCTAATTGAATAACATGTATTTTGCTGCAAATAAA---CAGTTCTAGAAACAGAGACTTGTAATACCAATATGGTAAGACTTTTAACATCATAATTTTG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66442832 205 +  90373283 AAATTGTGGAAATGTAAAAATTTAAATTTATGCTCTCAAAATTTGTATCGCAAAGGGATTTTTGTGTGTTTTATAAGTTG-TCCATGAAGAGTTTATATAAAACACTTCATCTAATTGAATAACAAGTATTTTGCTGCAAATAAA---CAGTTCTAGAAACAGAGACTTGTAATACCAATATGGTAAGACTTTTAACATCATAATTTTG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493268 205 -   1547936 AAATTGTGGAAATGTAAAAATTTAAATTTATGCTCTCAGAATTTGTATCGCAAAGGGATTTTTGTGTGTTTTATAAGTTG-TCCATGAAGAGTTTATATAAAACACTTCATCTAATTGAATAACATGTATTTTGCTGCAAATAAA---CAGTTCTAGAAACAGAGACTTGTAATACCAATATGGTAAGACTTTTAACATCATAATTTTG
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64629752 204 -  72162052 AGATTGTAGAAATGTAGAAATTTAAATTTATGTTTTCAAAGTTTGTATTACAAAGGGATTTTTGTGTGTTTTATAAGTTT-TCCATGAAGGGTATATATAAAACTATTCATCTAATTGAATAACATGTATCTTGCTGCAAATAAC---CAGTCCTAGAAGCAGAGACTCTTAATAGCAATATGGTAAGAC-TTCAACATCATAATTTTG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1046417 203 +   1314817 AGACTGTGGAAATGTAGAAATTTAAATTTATGTTTTCAAAGTTTGTATTGCAAAGGGATTTTTGTGTGTTTTATAAGTTG-TCCATGAAGGGTATACATAAAACTATTCATCTAATTGAATAACATGTATTTTGCTGCAAATAAC---CAGTCCTAG-ATCAGAGACTCTTAATAGCAATATGGTAAGAC-TTCAACATCATAATTTTG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6405041 204 -   6597006 agaTTGTGGAAATGTAGACATTTAACTTTCTGTTTTGAAAGTTTGTATTACAAAGGGATTTTTGTGTGTTTTATAAGTTG-TCCATGAAGGGCATATATAAAACTATTCATCTAATTGAATAACATGGATTTTGCTGCAAATAAC---CAGTCCTAAAAGCAGAGACTCTTAATAGCAATATGGTAAGAC-TTCAACATCATAATTTTG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19639016 154 -  27850971 AAATTGTGGAAATTTAGAAATTTAAATTCTCTTTCTCAAAAT---CATTGTAAAGGGATTC------------------------------------------CACTGTATCTAGGTGAAGAGTATATATTTTGCCCCACATAAAAGGCAGTACTAGAAACAGATACTGTAAATAATCATATAAT------TTCAGAA----GTTTTTT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79085380 200 -  85426708 AAATTGTGGAAATTCAGAGATTG--------TTTCTCACTATTTATATTGCAAAAGTATTCCACTGTGTTTTTGAAATAATTCCATTAAGGGTGTTGTTAACACTCTTTATCTAAGTGAAGAGTACAAGTTTTGCCTAAAATAATAATCGGCTCTACAAGCAGAGGCTTTTTATAACCACATGTAAAATG-TCCATTTTCAGAAATCTT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1702622 204 -   2296528 AAATAGTGGGAATTTAGAAATGTAAATTCTGTTTCCCAAAATCTCTATTACAGA---AATTCCACTGGTTTTCTAAATCATTTCTTGAATTTTGTATTTAAAATTCTTCATCTAATTGAAGAATATG--TCTTGCCTAAAATAATAACCAGCTCTAGAAGTAGATATTTTAGATGACCATATGTTAAAACTCCTAATGACAGAATTTTT
i dasNov3.JH570393             C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e nomLeu3.chr1a                 40797045 100 + 122973662 M

a score=154653.000000
s hg38.chr14_GL000009v2_random     16140 23 +    201709 TCATTGTAGTTTATTTAAAATAT
s panTro5.chr9                  41690316 23 + 116767853 TCATTGTAGTTTATTTAAAATAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033823 23 - 114479721 TCATTGTAGTTTATTTAAAATAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          111373 23 -    116138 TCATTGTAGTTTATTTAAAATAT
i gorGor5.CYUI01000530v1       C 0 C 0
s macFas5.chr13                111075968 23 - 111193037 TCATCGTAGTTTATTGAAAATAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345953 23 +    434444 TCATTGTAGTTTATTTAAAATAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          393275 23 -    438202 TCATTGTAGTTTATTTAAAATAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443037 23 +  90373283 TCATTGTAGTTTATTTAAAATAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493473 23 -   1547936 TCATTGTAGTTTATTTAAAATAT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64629956 23 -  72162052 TCACTGTAGTTTATTTAAAATAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1046620 23 +   1314817 TCATTGTAGTTTATTTAAAATAT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6405245 23 -   6597006 TCATTGTAGTTTATTTAAAATAT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19639170 22 -  27850971 GCATTGTAGTTT-TTGAAAGTAT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79085580 23 -  85426708 TTATATTACAGTGTTAAAAATAT
i canFam3.chr2                 C 0 C 0
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1702826  0 -   2296528 C
e nomLeu3.chr1a                 40797045 100 + 122973662 M

a score=37520.000000
s hg38.chr14_GL000009v2_random     16163 12 +    201709 TTACTTggccag
s panTro5.chr9                  41690339 12 + 116767853 TTACTTTgccgg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033846 12 - 114479721 TTACTTggccag
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01000530v1          111396 12 -    116138 TTACTTGGCCAA
i gorGor5.CYUI01000530v1       C 0 N 0
s macFas5.chr13                111075991 12 - 111193037 TTACTTggccag
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345976 12 +    434444 TTACTTggccag
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          393298 12 -    438202 TTACTTggccag
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443060 12 +  90373283 TTACTTggccag
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493496 12 -   1547936 TTACTTggccag
i manLeu1.NW_012105442v1       C 0 C 0
e aotNan1.NW_018488791v1         6405268  0 -   6597006 C
e canFam3.chr2                  79085603  0 -  85426708 C
e otoGar3.GL873538              19639192  0 -  27850971 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1702826  0 -   2296528 C
e cebCap1.NW_016107851v1         1046643  0 +   1314817 C
e saiBol1.JH378105              64629979  0 -  72162052 C
e nomLeu3.chr1a                 40797045 100 + 122973662 M

a score=11016.000000
s hg38.chr14_GL000009v2_random     16175 7 +    201709 gcgtggt
s panTro5.chr9                  41690351 7 + 116767853 gtatggt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033858 7 - 114479721 gtgtggt
i panPan2.chr13                C 0 C 0
s macFas5.chr13                111076003 7 - 111193037 gttcagt
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345988 7 +    434444 gcgcagt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          393310 7 -    438202 gcgcagt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443072 7 +  90373283 gcgcagt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493508 7 -   1547936 gcgcagt
i manLeu1.NW_012105442v1       C 0 C 0
e aotNan1.NW_018488791v1         6405268 0 -   6597006 C
e canFam3.chr2                  79085603 0 -  85426708 C
e otoGar3.GL873538              19639192 0 -  27850971 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1702826 0 -   2296528 C
e cebCap1.NW_016107851v1         1046643 0 +   1314817 C
e saiBol1.JH378105              64629979 0 -  72162052 C
e nomLeu3.chr1a                 40797045 100 + 122973662 M

a score=261601.000000
s hg38.chr14_GL000009v2_random     16182  95 +    201709 ggctcacacctgtaatcccagcacttttggagg------------------ccgaggtgggtagctcacctgaggtcaggagttcaagatcagcctggccaacatggtgaaac
s panTro5.chr9                  41690358  95 + 116767853 ggctcacacctataatcccagcacttttggagg------------------ccaaggtgggtagatcacctgaggtcaggagttcaagatcagcctggccaacgtggtgaaac
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033865  95 - 114479721 ggctcacacctataatcccagcacttttggagg------------------ctgaggtgggtagatcacctgaggtcaggagttcaagatcagcctggccaacatggtgaaac
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           73212  95 -    416926 ggctcacacctgtaatcccagcacttttggagg------------------ccgaggtgggtagatcacctgaggtcaggagttcaagatcagcctggccaacgtggtgaaac
i gorGor5.CYUI01015896v1       N 0 C 0
s macFas5.chr13                111076010 113 - 111193037 ggctcatgcctgtaatcccagcactttgggaggctgagatgcgtagatcacccgagttcggtagatcacctgaggccaggagttcgagatcagcctggccagggaggtgaaac
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          345995  95 +    434444 ggctcacgcctgtaatcccagcactttggaagg------------------ccgaggttggggaatcacctgaggtcaggagtttgagatcagtctggccaacatggtgaaag
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          393317  94 -    438202 ggctcacgcctgtaagcccagcactttggaagg------------------ccgaggt-gggggatcacctgaggtcaggagttcgagatcagtctggccaacatggtgaaag
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443079  94 +  90373283 ggctcacgcctgtaatcccagcactttgggagg------------------ccaaggt-gggggatcacctgaggtcaggagtttgagatcagtctggccaacatggtgaaag
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493515  94 -   1547936 ggctcacgcctgtaagcccagcactttggaagg------------------ccgaggt-gggggatcacctgaggtcaggagttcgagatcagtctggccaacatggtgaaag
i manLeu1.NW_012105442v1       C 0 C 0
e aotNan1.NW_018488791v1         6405268   0 -   6597006 C
e canFam3.chr2                  79085603   0 -  85426708 C
e otoGar3.GL873538              19639192   0 -  27850971 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1702826   0 -   2296528 C
e cebCap1.NW_016107851v1         1046643   0 +   1314817 C
e saiBol1.JH378105              64629979   0 -  72162052 C
e nomLeu3.chr1a                 40797045 100 + 122973662 M

a score=148849.000000
s hg38.chr14_GL000009v2_random     16277  66 +    201709 cctgtctc-t--------taaaaaaaaaaaaaaaaa------------------------------------gcacaaaaattatccaagcatga------------------------------tagtgcatgcctgtaa
s panTro5.chr9                  41690453  63 + 116767853 cctgtctc-t-----------aaaataaaataaaaa------------------------------------gcacaaaaattaaccaggcatga------------------------------tggtgcatgcctgtaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96033960  63 - 114479721 cctgtctg-t-----------aaaataaaataaaaa------------------------------------gcacaaaaattaaccagacatga------------------------------tggtgcatgcttgtaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           73307  74 -    416926 cctgtctc-taaaaaaaaaaaaaaacaaaacaaaaa------------------------------------aaacaaaaattaaccaggcgtga------------------------------tggtgcatgcctgtaa
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40797145  72 + 122973662 cctgtttc-t--aaaaaaaaaaaaaaaaaaaAaaaa------------------------------------gcacaaaaattaaccaggcatga------------------------------tggcgcatgcctgtaa
i nomLeu3.chr1a                M 100 C 0
s macFas5.chr13                111076123 130 - 111193037 cctgtctc-a----------aaaaaaaaaaaacaaaaaaaaaacaaaaactaaaaacaaaaaaaccccacacacagaaaaattagccaggcatgaaatactatcacagaaatacttacataaactgggaacatacctgtgt
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          346090  64 +    434444 cttgtctc-a----------aaaaaaaaaagaaaaa------------------------------------acacaaaacttagctgggcatga------------------------------tggcacatgcctgtat
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          393411  64 -    438202 cttgtctc-a----------aaaaaaaaaagaaaaa------------------------------------acacaaaacttagctgggcatga------------------------------tggcacatgcctgtat
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443173  65 +  90373283 cttgtctcaa----------aaaaaaaaaagaaaaa------------------------------------acacaaaacttagctgggcatga------------------------------tggcatatgcctgtat
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493609  63 -   1547936 cttgtctc------------aaaaaaaaaagaaaaa------------------------------------acacaaaacttagctgggcatga------------------------------tggcacatgcctgtat
i manLeu1.NW_012105442v1       C 0 C 0
e aotNan1.NW_018488791v1         6405268   0 -   6597006 C
e canFam3.chr2                  79085603   0 -  85426708 C
e otoGar3.GL873538              19639192   0 -  27850971 C
e colAng1.NW_012121088v1            1837 6091 +    168452 M
e dasNov3.JH570393               1702826   0 -   2296528 C
e cebCap1.NW_016107851v1         1046643   0 +   1314817 C
e saiBol1.JH378105              64629979   0 -  72162052 C

a score=461255.000000
s hg38.chr14_GL000009v2_random     16343 110 +    201709 tcccagttgctcaggaggctaaggcaggagaatcgcttgaacccaggaggcaaagattgcagtgagccaagatcgcaccattgcactgtaggctgggtgacagagcaaga
s panTro5.chr9                  41690516 110 + 116767853 tcccagctgctcaggaggccaaggcaggagaatggcttgaacccaggaggcggagtttgcagtgagccaagatcgcaccattgcactgcagcctgggtgacagagcaaga
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96034023 110 - 114479721 tcccagctgctcaggaggccaaggcaggagaatggcttgaacccaggaggcggagtctgcagtgagccaagatcgcaccattgcattgcagcctgggtgacagagcaaga
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           73381 108 -    416926 tcccagctgctcaggaggccaaggtgggagaatcacttgaa-ccgggaggc-gaggttgcagtgagccaagatcgcaccattgcactccagcctgggtgacagagcaaga
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40797217 110 + 122973662 tcccagctgctcaggaggccaaggcaggagaatcgcttggacccaggaggcggaggtcgcagtgagccaagatggcaccattgcactccagcctgggtgacagagcaaga
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111076253 110 - 111193037 tcccagctgctcaggaggccaagggaggagaatcacttgaacccggcaggcagaggttgcagtgaaccaagatcgcaccattgcactccagcctgggggacagagctaga
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          346154 110 +    434444 tctcagctgctcaggagactgaggagggagaatcgcttgaacccgggaggcggaggttgcagcaagccaagattgcaccattgcactccatccagggtgacatagccaga
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          393475 110 -    438202 tctcagctgctcaggaggctgaggagggagaatcgcttgaacccaggaggcggaggttgcagcaagccaagattgcaccattgcactccatccagggtgacatagcaaga
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443238 110 +  90373283 tctcagctgctcaggaggctgaggagggagaattgcttgaacccgggaggcggaggttgcagcaagccaagattgcaccattgcactccatccagggtgacatagcaaga
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493672 110 -   1547936 tctcagctgctcaggaggctgaggagggagaatcgcttgaacccaggaggcggaggttgcagcaagccaagattgcaccattgcactccatccagggtgacatagcaaga
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            8164 110 +    168452 tcccagctgctgaggaggccgagacaggagaatcacttgaacacggcaggcagaggttgcagtgaaccaaaatcgcaccattgcactccagcctgggtgacagagctaga
i colAng1.NW_012121088v1       M 6091 C 0
e aotNan1.NW_018488791v1         6405268   0 -   6597006 C
e canFam3.chr2                  79085603   0 -  85426708 C
e otoGar3.GL873538              19639192   0 -  27850971 C
e dasNov3.JH570393               1702826   0 -   2296528 C
e cebCap1.NW_016107851v1         1046643   0 +   1314817 C
e saiBol1.JH378105              64629979   0 -  72162052 C

a score=74850.000000
s hg38.chr14_GL000009v2_random     16453 33 +    201709 ctacatcttaa-------------------------aaaataaaataaaataaaaTAA
s panTro5.chr9                  41690626 38 + 116767853 ctacatcttaaa--------------------aaataaaataaaataaaataaaataa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96034133 38 - 114479721 ctacatcttaaa--------------------aaataaaataaaataaaataaaataa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           73489 23 -    416926 ctacatcttaa-----------------------------------aaaataaaaTAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40797327 23 + 122973662 ctacatcttaa-----------------------------------aaaataaaaTAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111076363 33 - 111193037 ctacatctgaaaa-------------------------aatgaaataaaaTAATATAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          346264 29 +    434444 ctacatcttaaaa-----------------------------aaatgaaataaaaTAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          393585 28 -    438202 ctacatcttaaa------------------------------aaatgaaataaaaTAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443348 28 +  90373283 ctacatcttaaa------------------------------aaatgaaataaaaTAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493782 28 -   1547936 ctacatcttaaa------------------------------aaatgaaataaaaTAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            8274 58 +    168452 ctacatcttaaaaaataaaataaagtaaagtaaaataaaataaaataaaataatataa
i colAng1.NW_012121088v1       C 0 C 0
s dasNov3.JH570393               1702826 19 -   2296528 TTGTATTTTAAA------------------------------AAATAGG---------
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6405268  0 -   6597006 C
e canFam3.chr2                  79085603  0 -  85426708 C
e otoGar3.GL873538              19639192  0 -  27850971 C
e cebCap1.NW_016107851v1         1046643  0 +   1314817 C
e saiBol1.JH378105              64629979  0 -  72162052 C

a score=1497601.000000
s hg38.chr14_GL000009v2_random     16486 189 +    201709 CCACTCAAAGTCCTTATATCATATTCTGAAAGTTTGAATGTCAGAAGGTTTTCTATT-TAGTTTTTTAAATGATCA----TTGG-AA-CTCCTGCAT-AC-CATAAGCTACTG---------------------------------------------------G---AGGTCAGTAAACATATTTGTGTGTATCCTGGAGT-------ACCTAGAATACAGTCTTCCATGTAAGAAGCATTTTACT--------------------------------------------TGTTG-tttttt-g
s panTro5.chr9                  41690664 190 + 116767853 CCACTCAAAGTCCGTATATCATATTCTGAAAATTTGAATGTCAGAAGGTTTTCTATT-TAGTTGTTTAAATAATCA----TTGG-AAGCTCCTGCAT-AC-CATAAGCTACTG---------------------------------------------------G---AGGTCAGTAACCATATTTGTGTGTATGCTGGAGT-------ACCTAGAATACAGTCTTCCATGTAAGAAGCATTTTACT--------------------------------------------TGTTG-tttttt-g
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96034171 190 - 114479721 CCACTCAAAGTCCGTATATCATATTCTGAAAATTTGAATGTCAGAAGGTTTTCTATT-TAGTTGTTTAAATAATCA----TTGG-AAGCTCCTGCAT-AC-CATAAGCTGCTG---------------------------------------------------G---AGGTCAGTAAACATATTTGTGTGTATGCTGGAGT-------ACCTAGAATACAGTCTTCCATGTAAGAAGCATTTTACT--------------------------------------------TGTTG-tttttt-g
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           73512 188 -    416926 CCACTCAAAGTCC-TATATCCTATTCTGAAATTTTGAATTTCAGAAGGTTTTCTATT-TAGTTGTTTAAATAATCA----TTGG-AAGCTCCTGCAT-AC-TAT-AGCTACTG---------------------------------------------------G---AGGTCAGTAAACATATTTGTGTGTATCCTGGAGT-------ACCTAGAATACAGTCTTCCATGTAAGAAGCATTTTACT--------------------------------------------TGTTG-tttttt-g
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40797350 198 + 122973662 CCACTCAAAGTCCTCATATCATATTCTGAAATTTTGAATTTCAGAAGGTTTTCTATT-TAGTTGTTTAAATAATCA----TTGG-AAGCTCCTGCAT-AC-CATAAGCTACTG---------------------------------------------------G---AGGTCAGTAAACATATTTTTGTGTATCCTGGAGTACCTAGAACCTAGAATACAGTCTTCCATGTAAGAAGCATTTTACT--------------------------------------------TGTTGttttttt-g
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111076396 189 - 111193037 CCACTCAAAGTCCTTATATCACACTCTGAAATTTCAAATTTT-GAAGTTTTGATATT-TAGTTGTTTAAATAATCA----TTGG-AAGCTGCTGCAT-AC-CATAAGCTACTG---------------------------------------------------G---AGGTCAGTAAACACATTTGTGTCTCTCCTGGAGT-------GCCTAGAATACAGTCTTCCATGTAAGAAGCATTTTAAT--------------------------------------------TGTTG-tttttt-g
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          346293 190 +    434444 CCACTCAAAGTCCTTATATCACATTCTGAAATTTTGAGTTTCAGAAGTTTTTATGTT-TAGTTGTTTAAGTAATCA----TTGG-AAACTCCTGAAT-AC-CATGAGCTACTG---------------------------------------------------G---AGGTCAGTAAACATATTTGCATGTATCCTGGAGT-------ACGTAGAATACAGTCTTCCATGTAAGAAGCATTTTAAT--------------------------------------------TGTTG-tttttt-g
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          393613 190 -    438202 CCATTCAAAGTCCTTATATCACATTCTGAAATTTTGAGTTTCAGAAGTTTTTATGTT-TAGTTGTTTAAGTAATCA----TTGG-AAACTCCTGAAT-AC-CATGAGCTACTG---------------------------------------------------G---AGGTCAGGAAACATATTTACATGTATCCTGGAGT-------ACGTAGAATACAGTCTTCCATGTAAGAAGCATTTTAAT--------------------------------------------TGTTG-tttttt-g
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443376 190 +  90373283 CCACTCAAAGTCCTTATATCACATTCTGAAATTTTGAGTTTCAGAAGTTTTTATATT-TAGTTGTTTAAGTAATCA----TTGG-AAACTCCTGAAT-AC-CATGAGCTACTG---------------------------------------------------G---AGGTCACTAAACATATTTACATGTATCCTGGAGT-------ACGTAGAATACAGTCTTCCATGTAAGAAGCATTTTAAT--------------------------------------------TGTTG-tttttt-g
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1493810 190 -   1547936 CCATTCGAAGTCCTTATATCACATTCTGAAATTTTGAGTTTCAGAAGTTTTTATGTT-TAGTTGTTTAAGTAATCA----TTGG-AAACTCCTGAAT-AC-CATGAGCTACTG---------------------------------------------------G---AGGTCAGTAAACATATTTACATGTATCCTGGAGT-------ACGTAGAATACAGTCTTCCATGTAAGAAGCATTTTAAT--------------------------------------------TGTTG-tttttt-g
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            8332 189 +    168452 CCACTCAAAGTCCTTATATCACATTCTGAAATTTCAAATTTT-GAAGTTTTGATATT-TAGTTGTTTAAATAATCA----TTGG-AAACTCCTGCAT-AC-CAtaagctactg---------------------------------------------------g---aggtcagtaaacacatttgtgtatctcctggagt-------gcctagaatacagtcttccatgtaagaagcattTTAAT--------------------------------------------TGTTG-tttttt-g
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64629979 209 -  72162052 CCACTCAAGGTCCTTATATCACATTCTGAAATTTCATATTTCAG--GTTTTTATATT-TAGTTGTTTAAATTAGTG----TTAA-AATCTCCTGCGT-AC-CATGAGCTACTG---------------------------------------------------G---AGGTCATTAAACATATTTGTGTGTGTCTTGGAGT-------ACCTTGAATACAGTCTTCCATGTAAGAAGCATTTTAAT------------------------tgtgtgtgtgtgtgtgtgtgtgtTG-TCttttgg
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1046643 235 +   1314817 CCACTTAAAATTCCTATATCACATTCTGAAATTTCAAATTTCAGAAGTTTTTATATT-TAGTTGTTTAAATTAGCA----TTTA-AATCTCCTGCGT-AC-CATGAGCTACTG---------------------------------------------------G---AGGTCAGTAAACATATTTGTGTGTGTCTTGGAGT-------ACCTTGAATACAGTCTTCCATGTAAGAAGCATTTTAATtgtgtgtgtgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTG-ttttttgg
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6405268 209 -   6597006 CCACtcaaagtccttatatcacattctgaaatttcaaatttcaGAAGTTTTTATATT-TAGTTGTTTAAATTAGCG----TTTA-AATCTCCTGCGT-GC-CATGAGCTACTG---------------------------------------------------G---AGGTCAGCAAACATATTTTTGTGTGTCTTGGAGT-------ACCTTGAATACACTCATCCATATAAGAAGCATTTTAAT--------------------------tgtgtgtgtgtgtgtgtgtATTG-ttttttgg
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19639192 189 -  27850971 CCACTCACAGTCCTTGTATCACATTATACAATTTCATATTTCAGAAGAGTTTGTATT-TAGTGATTTAAATAATCACTATTTTA-ACGCTTCTATATAAC-TGTGAGCTACTG---------------------------------------------------G---AAGTTAGGAAAC--ATTTGTGTGTATCCTGTAGT-------ACATAGAATAAAGTCTTGCATGTAAGAAGGATTTTAAT------------------------------------------------A-TTTTTT-G
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79085603 187 -  85426708 CTACTCATAGTCCTTGTGTCAGATTTTAAAATTTCAGAT--------GCTTTATACT-TATTTACATATTCTAAAA----TGAATAAGCTCCTGCATCAT-TTTACAGTAATA---------------------------------------------------GATTATATTAGGAAACATAATTGTGCATCTCCTGAAAT-------ACCTAGAATAAGATCTTGCTTGGAAGAAGCAATTTAAT--------------------------------------------AATTT-TTTAAT-G
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1702845 232 -   2296528 -----CAAGTCCCTTGAATAACTTTCTAAAAATCCAAATTTC---AGTTTTTGTACTATAGTTATTTAAATATTCA---TTTTA-AGGCCTCTGCAT-CCTTATAAGCTAAAGATAGAAAATATATATGCtaaataaataaataaatctttaaaaaaaGAAAAAG---AAAAAAGAAAACATATTTGCATATATCCTGGAGC-------ACGTAAAATAAAGTCTTGCTTATAAGAACCATTTTAAT------------------------------------------------A-TTTTTT-G
i dasNov3.JH570393             C 0 C 0

a score=74445.000000
s hg38.chr14_GL000009v2_random     16675 11 +    201709 agat-ggggttt
s panTro5.chr9                  41690854 11 + 116767853 agat-ggggttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96034361 11 - 114479721 agat-ggggttt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           73700 11 -    416926 agat-ggggttt
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40797548 11 + 122973662 agat-gaggttt
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111076585 11 - 111193037 agat-ggggttt
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          346483 11 +    434444 agat-ggggatt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          393803 11 -    438202 agat-ggggatt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443566 11 +  90373283 agat-ggggatt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494000 11 -   1547936 agat-ggggatt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            8521 11 +    168452 agat-ggggttt
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64630188 12 -  72162052 agatggggtttt
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1046878 11 +   1314817 agat-gggcttt
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6405477 11 -   6597006 agat-ggggttt
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79085790 11 -  85426708 TGAG-TAAGTTT
i canFam3.chr2                 C 0 I 2
e otoGar3.GL873538              19639381  0 -  27850971 C
e dasNov3.JH570393               1703077  0 -   2296528 C

a score=1168376.000000
s hg38.chr14_GL000009v2_random     16686 195 +    201709 cactctgtcacccaggctggagggcactggtgagatcttggctcactccgatctccatttcctaggctcaggtgatcctcacacctcagccatccaagtagttgaaacaatagagctatgtcaccatagacctgtgtcaccatgctgggctga----------gttttgtagagatagggttttgccttgttgcccaggctcttc
s panTro5.chr9                  41690865 195 + 116767853 cactctgtcacccaggctgtagggcactggtgagatcttggctcactccgatctccatttcctgggctcaggtgatcctcacacctcagcaatccaagtatttgaaacaatagagctatgtcaccatagacctgtgtcaccatgcttggctga----------gtttcgtagagacagggttttgccttgttgcccaagctggtc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96034372 195 - 114479721 cactctgtcacccaggctgtagggcactggtgagatcttggctcactccgatctccatttcctgggctcaggtgatcctcacacctcagcaatccaagtatttgaaacaatagagctatgtcaccatagacctgtgtcaccatgctcggctga----------gtttcatagagacagggttttgccttgttgcccaggctggtc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           73711 193 -    416926 cactctgtcacccaggctggagggcactggtgagatcttggctcactcc-atctccatttcctgggctcagg-gatcctcacacctcagccatccaagtagttgaaacaatagagctatgtcaccatagacctgtgtcaccatgctcagctga----------gttttgtagagacagggttttgccttgttgcccaggctggtc
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40797559 195 + 122973662 cactctgtcacccaggctggagggcactggtgagatcttggctcactcccatctccatttcctgggctcaggggatcctcacacctcagccatccaagtagttgaaacaatagagctatgtcaccatagacctgtgtcaccatgctcggctga----------gttttgtagagacagggttttgccttgttgcccatgctggtc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111076596 195 - 111193037 cactctgtcccccaggttggagggcactgttgagatgttggctcactttgatctctctttcctggactcaggtgatcctcacacctcagccatccaagtagttgaaattattgtcctatgtcacattagacctgtgtcaccatgcttggctga----------gttttgaacaggcagggttttgtcttgttgcccaggctggtc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          346494 188 +    434444 cactctgtaacccaggctggagtgcagtggtaagatcttggctcactccaatctccatttcctgggctcaggtgatcctcacacctcagccacccaagtagttgggacta----------------tagacctgtgtcaccatgcttggctgatttttgta-gtttttgtagagacagggttttgccttgttgcccaggctgatc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          393814 188 -    438202 cactctgtaacccaggctggagtgcggtggtaagatcttggctcactccaatctccatttcctgggctcaggtgatcctcacacctcagccacccaagtagttgggacta----------------tagacctgtgtcaccatgcttggctgatttttgta-gtttttgtagagacaggattttgccttgttgcccaggctgatc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443577 188 +  90373283 cactctgtaacccaggctggagtgcggtggtaagatcttggttcactccaatctccatttcctgggctcaggtgatcctcacacctcagacatccaagcagttgaaatta----------------tagacctgtgtcaccatgcttggctgatttttgta-gtttttatagagacaggattttgccttgttgcctaggctgatc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494011 188 -   1547936 cactctgtaacccaggctggagtgcggtggtaagatcttggctcactccaatctccatttcctgggctcaggtgatcctcacacctcagccacccaagtagttgggacta----------------tagacctgtgtcaccatgcttggctgatttttgta-gtttttgtagagacaggattttgccttgttgcccaggctgatc
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            8532 195 +    168452 cactctgtcccccaggctggaggacactggtgagatcttgactcacttcgatctctctttcctggactcaggtgatcctcacacctcagccatccaggtagttgaaattattgacctatgtcacgatagacctgtgtcaccaagcttggctga----------gatttgaagagacagggttttgccttgttgcccaggctggtc
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64630200 188 -  72162052 taccttgttacccaggctggagtgcagtggtgggatcctggctcactgcaatctctgcttcctgggctcagttgatcctcccactgcagccatccgagtagctgggaata----------------tagacctgcgttaccacgcacggatgacttttgta-ttttttgtagagatggggttttgccttgttgtccaggctagtt
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1046889 188 +   1314817 taccttgttacccaggctggagtgcagtggtgggatcctggctcactgcaatctctgcttcctgtgctcaagtgatcctcccactgcagccatccaagtagctgggaata----------------tagacctgcatcaccatgcttggatgatttttgta-ttttttgtagagatggggttttgccttgttgcccaggctagtt
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6405488 189 -   6597006 taccttgttacccaggctggagtgcagtggtgggatcctggctcactgcaatctctgcttcctgggctcaggtgatcctcccactgcagccatctgagtagctgggaata----------------tagacctgcgtcaccatgctcggatgatttttgtatttttttatagagatggggttttaccttgttgcccaggctagtt
i aotNan1.NW_018488791v1       C 0 C 0
e canFam3.chr2                  79085801   2 -  85426708 I
e otoGar3.GL873538              19639381   0 -  27850971 C
e dasNov3.JH570393               1703077   0 -   2296528 C

a score=9555.000000
s hg38.chr14_GL000009v2_random     16881 1 +    201709 t
s panTro5.chr9                  41691060 1 + 116767853 t
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96034567 1 - 114479721 t
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           73904 1 -    416926 t
i gorGor5.CYUI01015896v1       C 0 C 0
s ponAbe2.chr9                  90356544 1 + 135191526 t
i ponAbe2.chr9                 N 0 I 41598
s nomLeu3.chr1a                 40797754 1 + 122973662 t
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111076791 1 - 111193037 t
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          346682 1 +    434444 t
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394002 1 -    438202 t
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443765 1 +  90373283 t
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494199 1 -   1547936 t
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            8727 1 +    168452 t
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64630388 1 -  72162052 t
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1047077 1 +   1314817 t
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6405677 1 -   6597006 t
i aotNan1.NW_018488791v1       C 0 C 0
e canFam3.chr2                  79085801 2 -  85426708 I
e otoGar3.GL873538              19639381 0 -  27850971 C
e dasNov3.JH570393               1703077 0 -   2296528 C

a score=566227.000000
s hg38.chr14_GL000009v2_random     16882 89 +    201709 ttaattgttgggctcaaatgttctgctcgcctcagcctctcaaagtgctggggttac-agacatgag-----acaTTCAGCCTTAATAGTTGTTT
s panTro5.chr9                  41691061 89 + 116767853 ttaactgttgggctcaagtgttctgctcacctcagcctctcaaagtgctggggttac-aggcataag-----acaTTCAGCTTTAATAGTTGTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96034568 89 - 114479721 ttaactgttgggctcaagtgttctgctcgcctcagcctctcaaagtgctggggttac-aggcatgag-----acaTTCAGCTTTAATAGTTGTCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           73905 87 -    416926 ttaactgttgggctcaagtgttctgc-cgcctcagcctctcaaagtgct-gggttac-aggcatgag-----acaTTCAGCCTTAATAGTTGTTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40797755 81 + 122973662 ttaactgttgggctcaagtgttctgcccacctcagcctctcaaagtgctggggttac-ag-------------CATTCAGCCTTAATAGTTGTTT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111076792 89 - 111193037 ttaacctttgggctcaagtgttctgcccacctcagcctctcatagtgctgaggttac-agacaggag-----acaTTCAGCCTTAATAGTTGTTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          346683 89 +    434444 ttaactgttgggctcaagtgttctgtctgcctcagtctctcaaagtgctggggttac-tggcatgag-----acaTTCAGCCTTAATAGTTGCTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394003 89 -    438202 ttaactgttgggctcaagtgttctgtctgcctcagtctctcaaagtgctggggttac-tggcatgag-----acaTTCAGCCTTAATAGTTGCTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443766 89 +  90373283 ttaactgttgggctcaagtgttctgtctgcctcagtctctcaaagtgctggggttac-tggcatgag-----acaTTCAGCCTTAATAGTTGCTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494200 89 -   1547936 ttaactgttgggctcaagtgttctgtctgcgtcagtctctcaaagtgctggggttac-tggcatgag-----acaTTCAGCCTTAATAGTTGCTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            8728 89 +    168452 tgaaccattgggctcaagtgttctgcccacctcagcctctcatagtgctgaggttac-agacaggag-----acaTTCAGCCTTAATAGTTGTTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64630389 95 -  72162052 tgaacagctgggctcaagggatccacttgcctcagcctcttaaagtgctggggttacaagatatgagttaccacattcagccTTAATAGTTATTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1047078 95 +   1314817 tgagcagctgggctcaagggatccacttgcctcagcctctcaaagtgctggggttacaagatatgagttaccacattcagccTTAATAGTTATTT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6405678 95 -   6597006 tgaacagctgggctaaagggatccacttgcctcagcctctcaaagtgctgggctttcaagatatgagttaccacattcagccTTAATAGTTATTT
i aotNan1.NW_018488791v1       C 0 C 0
e canFam3.chr2                  79085801  2 -  85426708 I
e otoGar3.GL873538              19639381  0 -  27850971 C
e dasNov3.JH570393               1703077  0 -   2296528 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=65804.000000
s hg38.chr14_GL000009v2_random     16971 13 +    201709 AATCTG----AATAAAT
s panTro5.chr9                  41691150 13 + 116767853 AATCTG----AATAAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96034657 13 - 114479721 AATCTG----AATAAAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           73992 13 -    416926 AATCTG----AATAAAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40797836 13 + 122973662 AATCTG----AATAAAT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111076881 13 - 111193037 AGTCTG----AATAAAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          346772  9 +    434444 AATCTG--------AAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394092  9 -    438202 AATCTG--------AAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443855  9 +  90373283 AATCTG--------AAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494289  9 -   1547936 AATCTG--------AAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            8817 13 +    168452 TGTCTG----TATAAAT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64630484 17 -  72162052 AATCTAAATAAATAAAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1047173 17 +   1314817 AATCtaaataaataaat
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6405773 17 -   6597006 AATCtaaataaataaat
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19639381 13 -  27850971 AATGTG----AATAAAT
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1703077 13 -   2296528 AATCTG----AATAAAC
i dasNov3.JH570393             C 0 C 0
e canFam3.chr2                  79085801  2 -  85426708 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=2119082.000000
s hg38.chr14_GL000009v2_random     16984 304 +    201709 --AAACAAATGA---ATTTTTATATAATGGAATGTTATAAGTAATATAATAAACCTAATGTATCCAATCATTAAATATTG--TATTTAAAATATTGCTTACA-TT-GTATTATTTTTTAATATTTAACGGTGTATAAGTTTTGACATGTTATGTTGAGAATTTATGCCATAATTAAAAAGGAAATAAAATAGAAATAGGTCATCGGTAGCAAAGAGGGTTACAATATATTTTCTAGTATCATTCAACTGGAATCTTAACATTGAGATTTTAGATTAATATTTCTTAAGCT----TTTTATTAGACCCAACTCATGTT
s panTro5.chr9                  41691163 302 + 116767853 --AGACAAATAA---ATTTTTATGTAATGGAATGTTATAAGTAATATAATAAATCTAATGTATCTAATAATTAAATACTG--TTTTTAAAATATTGCTTACA-TT-GTATTATTTTTTAATATTAAAGGGTGTATAAGTTTTGATATGTTATGTTGAGAAATTATGCCATAATTAAAAAGGAAATAAAATAGAATTAGGTCATCGGTAGCAA--AGGGTTACAATATATTTTCTAATATCATTCAACTGGAATCTTAACATTGAGATTTTAGATTAACATTTCTTAAGTT----TTTTATTAGACCCAACTCATATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96034670 302 - 114479721 --AGACAaatga---atttttatgtaatggaatgttataagtaatataataaatctaatgtatctaatAATTAAATACCG--TTTTTAAAATATTGCTTACA-TT-GTATTATTTTTTAATATTAAAGGGTGTATAAGTTTTGATATGTTATGTTGAGAAATTATGCCATAATTAAAAAGGAAATAAAATAGAATTAGGTCATCGGTAGCAA--AGGGTTACAATATATTTTCTAATATCATTCAACTGGAATCTTAACATTGAGATTTTAGATTAACATTTCTTAAGTT----TTTTATTAGACCCAACTCATGTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           74005 299 -    416926 --AGACAAATGA---ATTTTTATATAATGGAATGTTATAAGTAATATAATAAACCTAATGTATCTAA-AATTAAATATTG--TATTTAAAATATTGCTTACA-TT-GTAT--TTTTTTAATATTTAAGGGTGTATAAGTTTTGATATGTTATGTTGAGAAATTATGCCATAATTAAAAAGGAAAT-AAATAGAAATAGGTCATCAGTAGCAAAGAGGGTTACAATATATTTTCTAGTATCATTCAACTGGAATCTTAACATTGAGATTTTAGATTAACGTTTCTTAAGCT----TTTTATTAGCTCCAACTCA-GTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40797849 300 + 122973662 --AGACAAATGA---ATTTTTATATAATGGAATGTTATAAGTAATAT-----ACCTAATGtatctaataattaaatattg--tatttaaaatattgcttacattt-gtattattttttaatatttaaGAGTGTATAAGTTTTGATATGCTATGTTGAGAAATTATGCCATAATTAAAAAGGAAATAAATTAGAAATAGGTCATCAGTAGCAAAGAGGGTTACAATATATTTTCTAGTATCATTCAACTGGAATCTTAACATTGAGATTTTAGATTAACATTTCTTAAGCT----TTTTATTAGCCCCAACTCACATT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111076894 300 - 111193037 --AGACAAGTGA---ATTTTTATATAATAGAATATTGTAAG-----TAATATATCTAATGTGTCTAATGATTAAATATTG--TATTGAAAATATTGCTTACATTT-GTATTATTTCTTAGTATTTAAAGGTGTATAAGTTTTGATGTGTTATGTTGAGAAATTATGCCATAAATAAAAAGGAAATAAATTAGAAATAGGTCGTCAGCAGCAAAGAGGGTTACAATATATTTTCTAGTATCATTCAACTGGAATGTTAAAATTGTGATATTACATTAACATTTCTTAAATG----TTTTATTAGCCTCAACTCATGTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          346781 300 +    434444 --AGACAAATGA---ATTTTTATATAGTGCAAGGTTATAAGTAATATAATATACCTCATGTATCTAATGATTAAA-------CTTCTAAAATATTGCTTACATTT-GCATTATTTTTTAATATTTAAGAATGTGTAAGTTTTGATGTGTTATGTTGAGAAATTATGCCATACATAAAAAGGAAATAAATTAGAAATAGGTCATCAGTAGCAATGAGGATTACAATGTATTTTCAAGTATCATTCAACTGGAATCTTAACATTGTGATTTTAGATAAACATTTCTTGTGCT----TTTTATTAGCCCCAACTCATGTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394101 300 -    438202 --AGACAAATGA---ATTTTTATGTAGTGCAAGATTATAAGTAATATAATATACCTCATGTATCTAATGATTAAA-------CTTTTAAAATATTGCTTACATTT-GCATTATTTTTTAATATTTAAGAATGTTTAAGTTTTGATGTGTTATGTTGAGAAATTATACCATACATAAAAAGGAAATAAGTTAGAAATAGGTCATCAGTAGCAATGAGAATTACAATGTATTTTCAAGTGTCATTCAACTGGAATCTTAACATTGTGATTTTAGATTAACATTTCTTGTGCT----TTTTATTAGCCCCAACTCATGTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66443864 300 +  90373283 --AGACAAATGA---ATTTTTATATAGTGCAAGATTATAAGTAATATAATATACCTCATGTATCTAATGATTAAA-------CTTTTAAAATATTGCTTACATTT-GCATTGTTTTTTAATATTTAAGGATGTGTAAGTTTTGATGTGTTATGTTGAGAAATTATGCCATAAATAAAAAGGAAATAAATTAGAAATAGGTCATTAGTAGCAATGAGAATTACAATATATTTTCAAGTGTCATTCAACTGGAATCTTAACATTGTGATTTTAGATTAATATTTCTTGTGCT----TTTTATTAGCCCCAACTCATGTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494298 300 -   1547936 --AGACAAATGA---ATTTTTATGTAGTGCAAGATTATAAGTAATATAATATACCTCATGTATCTAATGATTAAA-------CTTTTAAAATATTGCTTACATTT-GCATTATTTTTTAATATTTAAGAATGTTTAAGTTTTGATGTGTTATGTTGAGAAATTATGCCATAAATAAAAAGGAAATAAATTAGAAATAGGTCATCAGTAGCAATGAGAATTACAATGTATTTTCAAGTGTCATTCAACTGGAATCTTAACATTGTGATTTTAGATTAACATTTCTTGTGCT----TTTTATTAGCCCCAGCTCATGTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            8830 300 +    168452 --AGACAAGTGA---ATTTTTATATAATAGAATATTGTAAT-----TAATATACCTAATGTATCTAATTATTAAATATGG--TATTGAAGATATTGCTAACATTT-GTATTATTTCTTAATATTTAAAGGTGTATAAGTTTTGATGTGTTACATTGAGAAATTATGCCATAAATAACAAGGAAATAAATTAGAAATAGGTGATCAATAGCAAAGAGGGTTACAATATATTTTCTAGTATCATTCAACTGGAATGTTAACATTGTGATATTACATTAACATTTCTTAAACG----TTTTATTAGCCCCAACTCATGTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64630501 306 -  72162052 --AGACAAATGA---CTTTTTGTATTATGGAATGTTATAAGTAATGTTACATACCTAATGTAGCTCATGATTAAATACCGCATTTTTAAAATACTGCCTACATTT-GTATTATTTTTTAATGTTTAAGAACGTATAAGTTTTGATGTGTTATGCTGAGAAATTATGCCATTAATAAAAAGGAAATAAATTAT-AATAGGTCACAAATAGCCAAGAAATTTACAATATATTTTCTTGTATCATTCAACTGAAATCTTAAGATTATGATTTTAGATTAAAAATTTTTTAACT----TTTTGTTAGCCCCAATTTATGTT
i saiBol1.JH378105             C 0 I 63
s cebCap1.NW_016107851v1         1047190 307 +   1314817 --agacaaatga---atTTTTATATTATGGAATGTTATAAGTAATATTATATACCTAATGTATCTCATGATTAAATACCGCATTTTTAAAATATTGCTTACATTT-GTATTATTTTTTAATGTTTAAGAATATATAAGTTTCAATGTGTTATGTTGAGAAATTATGCCATTAATAAAAAGGAAATAAATTATAAATAGGTCATAAATAGCCCAGAAGTTTACAATATATTTTCTTGTATCATTCAACTGACATCTTAAGATTATGATTTTAGATTAAAAATTTTTAAACT----TTTTGTTAGCCCCAATTTATGTT
i cebCap1.NW_016107851v1       C 0 I 76
s aotNan1.NW_018488791v1         6405790 307 -   6597006 --agacaaatga---atTTTTATATTATGGAATGTTATAAGTAATATTACATACCTAATGTATCTCATGATTAAATACCTCATTTTTAAAATATTGCTTACATTT-GTATTATTTTTTAATGTTTAAGAACGTATAAGTTTCAATGTGTTATGTTGAGAAATTATGCCATTAATAAAAAGGAAATAAATTATAAATAGGTCATAAATAGCCAAGAAGTTGACAATATATTTTCTTGTATCATTCAACTGAAATCTTAAGATTATGATTTTAGATTAAAATTTCTTAAACA----TTTTGTTAGCCCCAATTTATGTT
i aotNan1.NW_018488791v1       C 0 I 76
s otoGar3.GL873538              19639394 239 -  27850971 --GAACAAGTAATTGATTTATATATCATGAAGTGTTATAAGTAATATAATATGCATACTATATCTAATAATTCAA-------TCTG-----------TTACA-----------TTTCTAAAATATGGAAATACAT----------------------------------------ATAATAAAATAAATTAGAAATATGTCACAAGTAGGAAAGAGGATTACAGTATATTTTTTAGTATC-TCCAACTATAAACTTAG-ATTAGAATTTCAAATTAGAATTTCTTAAATT----ATTT-TTAGCTCCAGTCCGTGTT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79085803 255 -  85426708 --AGACAGATGG---AATTCTGCATAATAGGATGTTATAAGTA---TTATGCATACTAAGTCataaatatataaa-------tttaaaaattGTAGCTCAAATTT-ATATTTCCTTTTCACATTT-AGGATTTACAAG-CTAAATGAATTATGTTGAGGAAATA---AATAAATAATTAAGAAAGAAAGT----------------------------------TATGTATTTTAGTACCCTCCAATTG------TCAGCTTGGAATTTTAGATAAAACTTCCTTACCTTTTTGTTTTTTTAACCCCATCT-ATATT
i canFam3.chr2                 I 2 C 0
s dasNov3.JH570393               1703090 260 -   2296528 GAAGATACCGAT---TTCTCTATTTTACAAAGCATTGCAAATAAT---ACATGAATTATATATCTAT---TTGAA-------TTTCTAAAACA-GGCTTAAATTTAATATTCCCTTTTATTATTT-TGTGCGTGTAAGTTCATTTGAGTTATACTGAGGGAATATGTTATAAATAAGAAAGAA---------------------------------GATTATAGTATATTTTGTGGTATCCTCCAATTATGAGCTTAG-ATTAGGGTTTTAGATGAAAATTTCTCAA-CT----TTTTTTTAGCTGCAACTTCTGTT
i dasNov3.JH570393             C 0 C 0
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=129106.000000
s hg38.chr14_GL000009v2_random     17288 21 +    201709 CCATTAAATACACCATTTCAA
s panTro5.chr9                  41691465 21 + 116767853 CTATTGAATATACCTTTTCAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96034972 21 - 114479721 CTATTGAATATACCTTTTCAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           74304 21 -    416926 CTATTAAATATACCTTTTCAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40798149 21 + 122973662 CTATTAAATATACCTTTTAAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077194 21 - 111193037 CTATTAAATATACCATTTCAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347081 21 +    434444 CTATGAAATTTACCTTTTCAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394401 21 -    438202 CTTTGAAATTTACCTTTTCAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444164 21 +  90373283 CTTTGAAATTTACCTTTTCAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494598 21 -   1547936 CTTTGAAATTTACCTTTTCAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1            9130 21 +    168452 CTATTAAATATATCATTTCAA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64630870 21 -  72162052 atgctAAATATACCCTTTTAA
i saiBol1.JH378105             I 63 C 0
s otoGar3.GL873538              19639633 21 -  27850971 CTATTAAAGGTATCTTTTCAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79086058 21 -  85426708 CCATTAGATATAGGCTTTCAA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1703350 21 -   2296528 CTATTAAAGCTATCTTTTCAA
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6406097 76 -   6597006 I
e cebCap1.NW_016107851v1         1047497 76 +   1314817 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=2552.000000
s hg38.chr14_GL000009v2_random     17309 1 +    201709 G
s panTro5.chr9                  41691486 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96034993 1 - 114479721 G
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           74325 1 -    416926 G
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40798170 1 + 122973662 G
i nomLeu3.chr1a                C 0 C 0
s colAng1.NW_012121088v1            9151 1 +    168452 A
i colAng1.NW_012121088v1       C 0 C 0
s otoGar3.GL873538              19639654 1 -  27850971 G
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79086079 1 -  85426708 G
i canFam3.chr2                 C 0 I 2
s dasNov3.JH570393               1703371 1 -   2296528 G
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6406097 76 -   6597006 I
e cebCap1.NW_016107851v1         1047497 76 +   1314817 I
e saiBol1.JH378105              64630891 0 -  72162052 C
e manLeu1.NW_012105442v1         1494619 0 -   1547936 C
e chlSab2.chr2                  66444185 0 +  90373283 C
e cerAty1.NW_012002921v1          394422 0 -    438202 C
e macNem1.NW_012012823v1          347102 0 +    434444 C
e macFas5.chr13                111077215 0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=19677.000000
s hg38.chr14_GL000009v2_random     17310 10 +    201709 CCATACATTA
s panTro5.chr9                  41691487 10 + 116767853 CCATACATTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96034994 10 - 114479721 CCATACATTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           74326 10 -    416926 CCATACATTA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40798171 10 + 122973662 CCATACATTA
i nomLeu3.chr1a                C 0 C 0
s colAng1.NW_012121088v1            9152 10 +    168452 CCATACATTA
i colAng1.NW_012121088v1       C 0 M 1885
s otoGar3.GL873538              19639655 10 -  27850971 CCATACATTA
i otoGar3.GL873538             C 0 C 0
e aotNan1.NW_018488791v1         6406097 76 -   6597006 I
e canFam3.chr2                  79086080  2 -  85426708 I
e dasNov3.JH570393               1703372  0 -   2296528 C
e cebCap1.NW_016107851v1         1047497 76 +   1314817 I
e saiBol1.JH378105              64630891  0 -  72162052 C
e manLeu1.NW_012105442v1         1494619  0 -   1547936 C
e chlSab2.chr2                  66444185  0 +  90373283 C
e cerAty1.NW_012002921v1          394422  0 -    438202 C
e macNem1.NW_012012823v1          347102  0 +    434444 C
e macFas5.chr13                111077215  0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=-492.000000
s hg38.chr14_GL000009v2_random     17320 12 +    201709 C---TCtttattatt
s panTro5.chr9                  41691497  6 + 116767853 C---------TTAtt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96035004  6 - 114479721 C---------TTAtt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           74336 13 -    416926 CC--TCtttattatt
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40798181 15 + 122973662 CCCTTTATTATTAtt
i nomLeu3.chr1a                C 0 C 0
s otoGar3.GL873538              19639665 12 -  27850971 ---CCCTTTAGAATT
i otoGar3.GL873538             C 0 I 3
e aotNan1.NW_018488791v1         6406097 76 -   6597006 I
e canFam3.chr2                  79086080  2 -  85426708 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703372  0 -   2296528 C
e cebCap1.NW_016107851v1         1047497 76 +   1314817 I
e saiBol1.JH378105              64630891  0 -  72162052 C
e manLeu1.NW_012105442v1         1494619  0 -   1547936 C
e chlSab2.chr2                  66444185  0 +  90373283 C
e cerAty1.NW_012002921v1          394422  0 -    438202 C
e macNem1.NW_012012823v1          347102  0 +    434444 C
e macFas5.chr13                111077215  0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=563571.000000
s hg38.chr14_GL000009v2_random     17332 681 +    201709  
s panTro5.chr9                  41691503 682 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96035010 681 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           74349 671 -    416926  
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40798196 677 + 122973662  
i nomLeu3.chr1a                C 0 I 13526
e aotNan1.NW_018488791v1         6406097  76 -   6597006 I
e canFam3.chr2                  79086080   2 -  85426708 I
e otoGar3.GL873538              19639677   3 -  27850971 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703372   0 -   2296528 C
e cebCap1.NW_016107851v1         1047497  76 +   1314817 I
e saiBol1.JH378105              64630891   0 -  72162052 C
e manLeu1.NW_012105442v1         1494619   0 -   1547936 C
e chlSab2.chr2                  66444185   0 +  90373283 C
e cerAty1.NW_012002921v1          394422   0 -    438202 C
e macNem1.NW_012012823v1          347102   0 +    434444 C
e macFas5.chr13                111077215   0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=42620.000000
s hg38.chr14_GL000009v2_random     18013 86 +    201709 ctaactggtgtgaaatga-tatctcatagtggtttcgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtct
s panTro5.chr9                  41692185 87 + 116767853 ctaaccggtgtgaaatgattatctcattgtggtttcaatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtct
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96035691 87 - 114479721 ctaaccggtgtgaaatgattatctcattgtggtttcaatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtct
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75020 86 -    416926 gtaactggtgtgagatgg-tatctcattgtggttttgatttgtatttctctgatggccagtgatgatgatcattttttcatgtgtct
i gorGor5.CYUI01015896v1       C 0 C 0
e aotNan1.NW_018488791v1         6406097 76 -   6597006 I
e canFam3.chr2                  79086080  2 -  85426708 I
e otoGar3.GL873538              19639677  3 -  27850971 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703372  0 -   2296528 C
e cebCap1.NW_016107851v1         1047497 76 +   1314817 I
e saiBol1.JH378105              64630891  0 -  72162052 C
e manLeu1.NW_012105442v1         1494619  0 -   1547936 C
e chlSab2.chr2                  66444185  0 +  90373283 C
e cerAty1.NW_012002921v1          394422  0 -    438202 C
e macNem1.NW_012012823v1          347102  0 +    434444 C
e macFas5.chr13                111077215  0 - 111193037 C
e nomLeu3.chr1a                 40798873 13526 + 122973662 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=7800.000000
s hg38.chr14_GL000009v2_random     18099 1 +    201709 g
s panTro5.chr9                  41692272 1 + 116767853 g
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96035778 1 - 114479721 g
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75106 1 -    416926 g
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812399 1 + 122973662 G
i nomLeu3.chr1a                I 13526 C 0
s macFas5.chr13                111077215 1 - 111193037 G
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347102 1 +    434444 G
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394422 1 -    438202 G
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444185 1 +  90373283 G
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494619 1 -   1547936 G
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64630891 1 -  72162052 G
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1047573 1 +   1314817 G
i cebCap1.NW_016107851v1       I 76 C 0
s aotNan1.NW_018488791v1         6406173 1 -   6597006 G
i aotNan1.NW_018488791v1       I 76 C 0
e canFam3.chr2                  79086080 2 -  85426708 I
e otoGar3.GL873538              19639677 3 -  27850971 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703372 0 -   2296528 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=18200.000000
s hg38.chr14_GL000009v2_random     18100 2 +    201709 CC
s panTro5.chr9                  41692273 2 + 116767853 CC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96035779 2 - 114479721 CC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75107 2 -    416926 CC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812400 2 + 122973662 CC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077216 2 - 111193037 CC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347103 2 +    434444 CC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394423 2 -    438202 CC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444186 2 +  90373283 CC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494620 2 -   1547936 CC
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64630892 2 -  72162052 CC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1047574 2 +   1314817 CC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6406174 2 -   6597006 CC
i aotNan1.NW_018488791v1       C 0 C 0
s dasNov3.JH570393               1703372 2 -   2296528 CC
i dasNov3.JH570393             C 0 C 0
e canFam3.chr2                  79086080 2 -  85426708 I
e otoGar3.GL873538              19639677 3 -  27850971 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=171290.000000
s hg38.chr14_GL000009v2_random     18102 22 +    201709 ATACATTACTCTTTAGAATTCT
s panTro5.chr9                  41692275 22 + 116767853 ATACATTACTCTTTAGAATTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96035781 22 - 114479721 ATACATTACTCTTTAGAATTCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75109 22 -    416926 ATACATTACTCTTTAGAATTCT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812402 22 + 122973662 ATACATTACTCTTTAGAATTCT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077218 22 - 111193037 ATACATTACTCTTTAGTATTCT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347105 22 +    434444 ATACATGACTCTTTAGAATTTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394425 22 -    438202 ATACATGACTCTTTAGAATTCT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444188 22 +  90373283 ATACATGACTCTTTAGAATTCT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494622 22 -   1547936 ATACATGACTCTTTAGAATTCT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64630894 22 -  72162052 ATACATTACTCTTTAGCATTCT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1047576 22 +   1314817 ATACATTACTCTTTAGCATTCT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6406176 22 -   6597006 ATACATTACTCTTTAGCATTCT
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79086082 22 -  85426708 ATACATTTCTTCTTAGAATTCT
i canFam3.chr2                 I 2 C 0
s dasNov3.JH570393               1703374 20 -   2296528 ATACATTATTTCTTAGAAAT--
i dasNov3.JH570393             C 0 C 0
e otoGar3.GL873538              19639677  3 -  27850971 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=790319.000000
s hg38.chr14_GL000009v2_random     18124 129 +    201709 GGTGACCAATTCTTTTTCTGGGTGGAAAGTTGATG-----GAAAG----------------TTCCAG--TTTTCTCTCTCTGTTATAAT--------AATGTT----CTTTCAGGTAATGGTAGATGACCATATTTAGCTAATTGAA-----TGTCTTA-----TAGTAAGAAA---------
s panTro5.chr9                  41692297 129 + 116767853 GGTGACTAATTCTTTTTCTGGGTGGAAAGTTGATG-----GAAAG----------------TTCCAG--TTTTCTCTCTCTGTTATAAT--------AATGTT----CTTTCAGGTAATGATAGATGACCATATTTAGCTAATTGAA-----TGTCTTA-----TAGTAAGAAA---------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96035803 129 - 114479721 GGTGACTAATTCTTTTTCTGGGTGGAAAGTTGATG-----GAAAG----------------TTCCAG--TTTTCTCTCTCTGTTATAAT--------ATTGTT----CTTTCAGGTAATGATAGATGACCATATTTAGCTAATTGAA-----TGTCTTA-----TAGTAAGAAA---------
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75131 128 -    416926 GGTGACCAATT-TTTTTCTGGGTGGAAAGTTGATT-----GAAAG----------------TTCCAG--TTTTCTCTCTCTGTTATAAT--------AATGTT----CTTTCAGGTAGTGGTCGATGACCATATTTAGCTAATTGAA-----TGTCTTA-----TAGTAATAAA---------
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812424 125 + 122973662 GGTGACCAATTCTTTTTCTAGGTGGAAAGTT---------GAAAG----------------TTCCAG--ATTTCTCTCTCTGTGGCAAT--------AATGTG----CTTTCAGGTAGTGGTAGATGACCATATTTAAGTAATTGAA-----TGTCTTA-----TAGTAATAAA---------
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077240 127 - 111193037 GGTGACCAAATCTTTTCCTGGGTGGAAATTTGATG-----AAAAG----------------TTCCAG--GTTTCCCTC--TGTTGTAAT--------AATGTT----CTTTAAGGTAGTGGTAGATGACCATATTTAGCTACTTGAA-----TGTCTTA-----GAGTAATAAA---------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347127 125 +    434444 GGTGACCAGTTCTTTTTCTAGGTGGAAAGTTT---------AAAG----------------TTCCAG--GTTTCTCTCTTTGTTATAGT--------AATATT----CTTTCAGGTAGTGGTAGATGACCATATTTAAGTAATTGAA-----TGTCTTA-----GAGTAATAAA---------
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394447 125 -    438202 GGTGACCAATTGTTTTTCTAGGTGGAAAGTTG---------AAAG----------------TTCCAG--GTTTCTCTCTTTGTTATAAT--------AATGTT----CTTTCAGGTAGTGGTAGATGACCATATTTAAGTAATTGAA-----TGTCTTA-----GAGTAATAAA---------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444210 125 +  90373283 GGTGACCAATTCTTTTTCTAGGTGGAAAGTTG---------AAAG----------------TTCCAG--GTTTCTCTCTTTGTTATAAT--------AATGTT----CTTTCAGGTAGTGGTAGATGACCATATTTAAGTAATTGAA-----TGTCTTA-----GAGTAATAAA---------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494644 125 -   1547936 GGTGGCCAATTGTTTTTCTAGGTGGAAAGTTG---------AAAG----------------TTCCAG--GTTTCTCTCTTTGTTATAAT--------AATGTT----CTTTCAGGTAGTGGTAGATGACCATATTTAAGTAATTGAA-----TGTCTTA-----GAGTAATAAA---------
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64630916 118 -  72162052 GGTGACCAATTCTTTCTGTAGGTGG----------------AAAG----------------CTCCAG--TTTTCTCTTTCTGTAATAAT--------AACATT----CTTTCAGGTAGTGGTTGACGACCATGTTTAGCTAATTGAA-----TGTCTTA-----TAGTAATAAA---------
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1047598 118 +   1314817 GGTGACCAATTCTTTCTGTAGGTGG----------------AAAG----------------TTCCAG--TTTTCTCTCTCTGTAATAAT--------AATGTT----TTTTCAGGTAGCAGTGGATGACCATGTTTAGCCAATTGAA-----TGTCTTA-----TATTAATAAA---------
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6406198 118 -   6597006 GGTGACCAATTCTTTCTGTAGGTGG----------------AAAG----------------TTCCAG--TTTTCTCTCTCTGTAATAAT--------ACTGTT----CTTTCAGGTAGTGGTCGACGAGCATGTTTAGCTAATTGAA-----TGTCTTA-----TAGTAATAAA---------
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19639680 148 -  27850971 GATTACCAATTCTTTTTCCAGTTGGGAAGTTGGTG-----GAACATTTC---------TTTTTCCGT--TTTTCATTTTCAGTAGTAGTAAAATGAAAATGTTACAGTTTTCAGGTAGTGGTAGATGACCATGCTTGACTATTTGGA-----CTggtaa-----taaaattaaa---------
i otoGar3.GL873538             I 3 C 0
s canFam3.chr2                  79086104 144 -  85426708 CACTACCAATTCTTTTTCCATGTGGAAAGTTGATGTGTTAGAAACATTT---------CTTTTTCAATTTTTTTTCTCTCTCTAGTGAT--------AATTTG-TAGCTTCCAGGTTGTGCTAGATGACCA-------CTAATTGAAAAATTTACTCTA-----TAGTTAAAAA---------
i canFam3.chr2                 C 0 I 454
s dasNov3.JH570393               1703394 156 -   2296528 ----GCTAATTGTCAATGTGAGTTGACAGGTTA-------GAAACATTTTGTCTTCAATTTTTCCAT--TTTTCTCTCTCTCTAGTAAT--------AATTTA-GAGCTTTCATGTAGTGGTAGAAGACCATGTTCAACTAATTAAA-----TGACTTATTTTGTAGTGGTAAAATTAAAACT
i dasNov3.JH570393             C 0 C 0
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=388485.000000
s hg38.chr14_GL000009v2_random     18253 59 +    201709 CAC--TATCACAGAAGTA-------------------------------------CTTACAAAAAAC----TAATTGCAGCATAAATATTAATTAGTATTAT
s panTro5.chr9                  41692426 63 + 116767853 CAC--TATCACAGAAGTA-------------------------------------CTTACAAAAAACTAATTAATTGCAGCATAAATATTAATTAGTATTAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96035932 63 - 114479721 CAC--TATCACAGAAGTA-------------------------------------CTTACAAAAAACTAATTAATTGCAGCATAAATATTAATTAGTATTAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75259 59 -    416926 CTC--TATCACAGAAGTA-------------------------------------CTTACAAAAAAC----TAATTGTAGCATAAATATTAATTAGTATTAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812549 60 + 122973662 CTC--TATCACAGAAGTA-------------------------------------CTTACAAAAAAA---CTAATTGTAGCATAAATATGAATTAGAATTAT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077367 58 - 111193037 CTC--TATCACAGAAATA-------------------------------------CTTAC-ATAAAC----TAATTGTAGCATAAATATTAATTAGCATTAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347252 59 +    434444 CTC--TATCACAGAAGTA-------------------------------------CTTACAAAAAAC----TAATTGTAGCATAAATATTAATTAGTATTAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394572 59 -    438202 CTC--TATCACAGAAGTA-------------------------------------CTTACAAAAAAC----TAATTGTAGCATAAATATTAATTAGTATTAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444335 59 +  90373283 CTG--TATCACAGAAGTA-------------------------------------CTTACAAAAAAC----TAATTGTAGCATAAATATTTATTAGTATTAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494769 59 -   1547936 CTC--TATCACAGAAGTA-------------------------------------CTTACAAAAAAC----TAATTGTAGCATAAATATTAATTAGTATTAT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64631034 61 -  72162052 CTCCGTATCACAGAAGTA-------------------------------------TTTACAAAAAAC----TCACTGTAGCATAAATGTTAATTAGCATTAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1047716 61 +   1314817 CTTTGTATCACAGAAGTA-------------------------------------TTTACAAAAAAC----TCACTGTAGCATGAATGTTAATTAGCATTAT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6406316 61 -   6597006 CTCCATATCACAGAAGTA-------------------------------------TTTACAAAAAAC----TCATTGTAGCATAAATATTAATTAGCATTAT
i aotNan1.NW_018488791v1       C 0 I 399
s otoGar3.GL873538              19639828 98 -  27850971 ctctttactgtagaagtagtttagaataaagagttacaaaaagtttagaataaagtttacaaaaaac----taattgtaaagtaaatgctaatcagtattat
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1703550 58 -   2296528 CCT--TATTACAGTAGTT-------------------------------------TTTATAAACAAA----CAATTGCAGAGT-AATACAGATCAGTATTAA
i dasNov3.JH570393             C 0 C 0
e canFam3.chr2                  79086248 454 -  85426708 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=134556.000000
s hg38.chr14_GL000009v2_random     18312 34 +    201709 CAGAGTTAT-GAAAGACCGAAG-------------GCTCTGTTAT--------AGA
s panTro5.chr9                  41692489 34 + 116767853 CACAGGTGT-GAAAGTCCAAAG-------------GCTCTGTTAT--------AGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96035995 34 - 114479721 CACAGGTAT-GAAAGTCCAAAG-------------GCTCTGTTAT--------AGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75318 34 -    416926 CAGGGATAT-GAAAAGAAAAAG-------------GCTCTGTTAT--------AGA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812609 35 + 122973662 TAGGGAGAT-GAAAGACCAAAA------------TGCTCTGTTAT--------AGA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077425 35 - 111193037 TCGGGATAT-GAAAGACCAAAA------------CACTCTATAAT--------AGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347311 35 +    434444 TAGGGATAT-GAAAGACCAAAA------------GGCTCTGTTAT--------AGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394631 35 -    438202 TAGGGATAT-GAAAGACCAAAA------------GCCTCTGTTAT--------AGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444394 35 +  90373283 TAGGGATAT-GAAAGACCAAAA------------GGCTCTGTTAC--------AGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494828 35 -   1547936 TAGGGATAT-GAAAGACCAAAA------------GCCTCTGTTAT--------AGA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64631095 35 -  72162052 TAGGCCTAT-CAAGGACCAAAA------------AGCTCTGCTAT--------AGA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1047777 35 +   1314817 TAGGGCTAT-GAAGGACCAAAA------------AGCCCTGCTAT--------AGA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19639926 41 -  27850971 ------tag-gatagactaggatatcctaggatagtctctGTTAT--------ATA
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1703608 42 -   2296528 TAGGGACATAGTAGGAACAAAA--------------GTCTGTAATTTTCTATGAGA
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6406377 399 -   6597006 I
e canFam3.chr2                  79086248 454 -  85426708 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=31994.000000
s hg38.chr14_GL000009v2_random     18346  7 +    201709 ----------TCTATTT-----
s panTro5.chr9                  41692523  7 + 116767853 ----------TCTATTT-----
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96036029  7 - 114479721 ----------TCTATTT-----
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75352  7 -    416926 ----------TCTATTT-----
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812644  7 + 122973662 ----------TCTCTTT-----
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077460  7 - 111193037 ----------TCTATTT-----
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347346  7 +    434444 ----------TCTGTTT-----
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394666  7 -    438202 ----------TCTGTTT-----
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444429  7 +  90373283 ----------TCTGTTT-----
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494863  7 -   1547936 ----------TCTGTTT-----
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64631130  7 -  72162052 ----------TCTATCT-----
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1047812  7 +   1314817 ----------TCTATTT-----
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19639967  7 -  27850971 ----------TATATCT-----
i otoGar3.GL873538             C 0 I 295
s canFam3.chr2                  79086702  7 -  85426708 ----------TTTTTTT-----
i canFam3.chr2                 I 454 C 0
s dasNov3.JH570393               1703650 22 -   2296528 TACACACACATCCACATACCTT
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6406377 399 -   6597006 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=185988.000000
s hg38.chr14_GL000009v2_random     18353 33 +    201709 CCCCATGTACTTTATTGTACTTCATGTTTTTCG
s panTro5.chr9                  41692530 33 + 116767853 CCCTATGTACTTTATTGTACTTCATGTTGTTTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96036036 33 - 114479721 CCCTATGTACTTTATTGTACTTCATGTTGTTTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75359 33 -    416926 CCCCATGTACTTTATTGTACTTCATGTTGTTTC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812651 33 + 122973662 CTCCATGTACTTTATTGTACTTCATGTTGTTTC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077467 33 - 111193037 CTCCATGTATTTTATGGTACTTCATGTTGTTTC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347353 33 +    434444 CTCCATTTACTTTATTGTACTTCATGTTGTTTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394673 33 -    438202 CTCCATTTACTTTATTGTACTTCATGTTGTTTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444436 33 +  90373283 CTCCATTTACTTTATTGTACTTCATGTTGTTTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494870 33 -   1547936 CTCCATTTACTTTATTGTACTTCATGTTGTTTA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64631137 30 -  72162052 CTCCATGTACTTTACTGTACT---TACTGTTTC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1047819 30 +   1314817 CTCCGTGTACTTTACTGTACT---TGTTGTTTC
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19640269 33 -  27850971 ccACATGTACCTTATTGTACTTCATGTTTTTAC
i otoGar3.GL873538             I 295 C 0
s canFam3.chr2                  79086709 31 -  85426708 TCCCACAGGCCTTTTATTACTT-ATATTTTTC-
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1703672 32 -   2296528 TTCCACATACCTTAGTGTAATT-ATATTTTTTG
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6406377 399 -   6597006 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=502925.000000
s hg38.chr14_GL000009v2_random     18386 66 +    201709 TTTTCTTTCTTGGCTTAAGCTCATATTTCATTGACTAATT---------------AGGCTTGTTTTTTGTTTGTATCTCTC
s panTro5.chr9                  41692563 66 + 116767853 TTTTCTTTCTTGGCTTAAGCTCATATTTCATTGACTAATT---------------AGGCTTGTTTTTTGTTTGTATCTCTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96036069 66 - 114479721 TTTTCTTTCTTGGCTTAAGCTCATATTTCATTGACTAATT---------------AGGCTTGTTTTTTGTTTGTATCTCTC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75392 66 -    416926 TTTTCTTTCTTGGCTTAAGCTCATATTTCATTGACCAATT---------------AGGCTTGTTTTTTGTTTGTATCTCTC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812684 64 + 122973662 TTTTCTTTCTTGGCCTAAGCTCATATCTCATTGACCAATT---------------AGGCTTGTTTTT--TTTGTATCTTCC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077500 66 - 111193037 TTTTCTTTCTTGACTTAAGCTCATATTTCATTGACCAATT---------------AGGCTTGTTTTTCATTTGTATCTCTC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347386 66 +    434444 TTTTCTTTCTTGGCTTAAGCTCATGTTTCATTGACCAGTT---------------AGGCTTGTTTTTTGTTTGTATCTCCC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394706 66 -    438202 TTTTCTTTCTTGGCTTAAGCTCATGTTTCATTGACCAGTT---------------AGGCTTGTTTTTTGTTTGTATCTCCC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444469 66 +  90373283 TTTTCTTTCTTGGCGTAAGCTCATATTTCATTGACCAATT---------------AGGCTTGTTTTTTGTTTGTATCTCCC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494903 66 -   1547936 TTTTCTTTCTTGGCTTAAGCTCATGTTTCATTGACCAGTT---------------AGGCTTGTTTTTTGTTTGTGTCTCCC
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64631167 66 -  72162052 TTTTCTTTCTTGGCTTAAGCTCATATTTAACTGACCAATT---------------AGGTTTCTTTTGTGTTTGTTTCTCTC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1047849 66 +   1314817 TTTTCTTTCTTGGCTTAAGCTCATATTTAATTGACCAATT---------------AGGCTTCTTTTTTGTTTGTTTCTCTC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6406776 66 -   6597006 ttttctttcttGGCTTAAGCTCATATTTAATTGACCAATC---------------AGGCTTGTTTTTTGTTTGTTTCTCTC
i aotNan1.NW_018488791v1       I 399 C 0
s otoGar3.GL873538              19640302 66 -  27850971 TTTTCTTTCTTGGCTTCAGCTAATACTTGATTGAttatct---------------ctctctctcttttttttttttttgtt
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79086740 54 -  85426708 --------CTTGCCTTAAGCTCATGCTTGATTGAATGGT-------------------CGTGTCTTATGTTTTTCCTTTTT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1703704 80 -   2296528 TCTTTTTTCTTGGC-TAAGCTTGTATTTGATTGAGTGGTTCTTTTTTTtttttaaagatttattttttatttatttctttc
i dasNov3.JH570393             C 0 I 16412
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=15817.000000
s hg38.chr14_GL000009v2_random     18452  3 +    201709 ------------TTT
s panTro5.chr9                  41692629 15 + 116767853 TTTGTTCTCACATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96036135 15 - 114479721 TTTGTTCTCACATTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75458 15 -    416926 TTCATTCTCACATTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812748 15 + 122973662 TTAGTTCTCACATTT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077566 15 - 111193037 TTTGTTCTCACATTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347452 15 +    434444 TTCTTTCTCACATTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394772 15 -    438202 TTCGTTCTCACATTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444535 15 +  90373283 TTCGTTCTCACATTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494969 15 -   1547936 TTCGTTCTCACATTT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64631233  3 -  72162052 TTT------------
i saiBol1.JH378105             C 0 I 3528
s cebCap1.NW_016107851v1         1047915  3 +   1314817 TTT------------
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6406842  3 -   6597006 TTT------------
i aotNan1.NW_018488791v1       C 0 I 3499
s otoGar3.GL873538              19640368  3 -  27850971 ttt------------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79086794  3 -  85426708 TCT------------
i canFam3.chr2                 C 0 C 0
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=9555.000000
s hg38.chr14_GL000009v2_random     18455 1 +    201709 T
s panTro5.chr9                  41692644 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96036150 1 - 114479721 T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75473 1 -    416926 T
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812763 1 + 122973662 T
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077581 1 - 111193037 T
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347467 1 +    434444 T
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394787 1 -    438202 T
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444550 1 +  90373283 T
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494984 1 -   1547936 T
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64634764 1 -  72162052 T
i saiBol1.JH378105             I 3528 C 0
s cebCap1.NW_016107851v1         1047918 1 +   1314817 T
i cebCap1.NW_016107851v1       C 0 I 4378
s aotNan1.NW_018488791v1         6410344 1 -   6597006 T
i aotNan1.NW_018488791v1       I 3499 C 0
s otoGar3.GL873538              19640371 1 -  27850971 t
i otoGar3.GL873538             C 0 I 6129
s canFam3.chr2                  79086797 1 -  85426708 T
i canFam3.chr2                 C 0 I 9956
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1078544.000000
s hg38.chr14_GL000009v2_random     18456 225 +    201709 AAATTGAAATTTTTGGGgaggcagggtcttgctctgttgtccatgctgtagtgtagtggcatgatcttggctcactgctgtatccacttctcaggctcaagtgatcctcccacatcagcttcccaagcagctgggactacaggcacacaccttcatgcctgactccttttggtattttttgtgtagagatgtgttctcattatgttggccaggctggtctccaac
s panTro5.chr9                  41692645 225 + 116767853 AAATGGAAATTTTTGGGgagtcagggtcttgctctgttatccatgctgcagtgtagtggcatgatcttggctcactgcagtatccacctctcaggctcaagtgatcctcccacatcagcttcccaagcagctgggactgcaggcacacaccatcatgcctgattccttttggtattttttgtgtagagatgtgttctcattatgttgcccaggctggtctcaaac
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96036151 225 - 114479721 AAATGGAAATTTTTGGGgagtcagggtcttgctctgttatccatgctgcagtgtagtggcatgatcttggctcactgcagtatccacctctcaggctcaagtgatcctcccacatcagcttcccaagcagctgggactgcaggcacacaccatcatgcctgattccttttggtaatttttgtgtagagatgtgttctcattatgttgcccaggctggtctcaaac
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75474 225 -    416926 AAATTGAAATTTTTGGGgagtcagggtcttgctctgttgcccatgctgcagtgtagtggcatgatcttggctcactgcagtatccacctctcaggctcaagtgatcctcccacatcagcttcccaagcagctgggactacaggcacacaccatcatgcctgactccttttggtattttttgagtagagatgtgttctcattatgttgcccaggctggtctcaaac
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812764 223 + 122973662 AAATTGAAAtttttgtggagtcagggccttgctctgttgcccaggctggagtgtagtgccatgatcttggctcactacagtctccacctctaaggctcaagtgatcttcccacatcagcctcccgagcagctggga-taaaggcacacaccatcatgcctgactcctttttgta-tctttgtgtagagatgtgttctcgttatgttgcccaggctggtctcaaat
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077582 223 - 111193037 AAATAGAAACTTCTGGGgagtcagggtcttgctctgttccccagtctggactgcagtggcatgatcttggttcactacagtctccacctctcaggctcaagtgatcctcccacatcagcctcctgagcagctggga-tacaggcacagaccatcatgcctgactcctttttgta-tttctgtgtagagatgtattcccattatgttgcccaggctggtctcaaac
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347468 223 +    434444 AAGTCGAAAtttttgtggagtcagggtcttgttctgttgcccaggacggagtgtagtggcatgatcttggctcactacagtctccgcctctaaagctcaagtgatcctcccacatcaacctcccgagcagctggga-tacaagcacacaccataaagcctgactcctttttgta-tttttgtgtagagatgtgttctcattttgttgccctggctggtctcaaac
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          394788 223 -    438202 AAGTTGAAAtttttgtggagtcagggtcttgttctgttgcccaggacagagtgtagtggcatgatcttggctcactacagtctccgcctctaaagctcaagtgatcctcccacatcaacctcccgagcagctggga-tacaagcacacaccataaagcctgactcctttttgta-tttttgtgtagagatgtgttctcattatgttgcccaggctggtctcaaac
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444551 223 +  90373283 AAGTTGAAAtttttgtggagtcagggtcttgttctgttgcccaggatggagtgtagtggcatgatcttggctcactacagtctccgcctctaaatctcaagtgatcctcccacatcaacctcccaagcagctggga-tacaagcacacaccataaagcctgactcctttttgta-tttttgtgtagagatgtgttctcattatgttgcccaggctggtctcaaac
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1494985 223 -   1547936 AAGTTGAAAtttttgtggagtcagggtcttgttctgttgcccaggacggagtgtagtggcatgatcttggctcactacagtctccgcctctaaagctcaagtgatcctcccacatcaacctcccgagcagctggga-tacaagcacacaccataaagcctgactcctttttgta-tttttgtgtagagatgtgttctcattatgttgcccaggctggtctcaaac
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64634765 212 -  72162052 AAATTGAAATTTTGGGGgagacagggtagtgc--tgttgccgaggctggagtgtagtggcatgatcttggctcactgcagtctccatgtctcaggctcaacttatcctcccgcatcagcctcccgagcagatgggactacaggcatacaccatgatgcctgactcatttttgta-----------gagatgcattctcattatgttgcccagttgcatctggaat
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6410345 213 -   6597006 AAATTGAAATTTTTGGGgagacagggtcttgctgtgttgccaaggctggagtgtagtggcatgatcttggctcactacagtctccatgtctcaggctcaagttatcctcccacatcggcctcccgagcagatgggactacaggcatacgccatgatgcctgactca-ttttgta-----------gagatgcgttctcattatgttgcccagttgcgtctggaat
i aotNan1.NW_018488791v1       C 0 C 0
e canFam3.chr2                  79086798 9956 -  85426708 I
e otoGar3.GL873538              19640372 6129 -  27850971 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e cebCap1.NW_016107851v1         1047919 4378 +   1314817 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=2356372.000000
s hg38.chr14_GL000009v2_random     18681 391 +    201709 tcctgaactcaagcaatccacccaccttggccttgcaaagggctgagattacaggtgtgagccaccatgcctggGCAACATTGAGATTGATTTAAAGAAATTGATT---------------AGggc--tgggt-gtggtggtgcacactgcttatctcaacattttgggaggcagaagtggaagatttgcttgagcccaggagcttgagaccagcctgggaggtataatgaggccttgtctctacaaagataacaataaaaacattagcatgacatgatggtatgcacctgtagttccagctattcaggaagttgaggt--gggaagattgcttgaggtcaggagtttgagaccacagtgagccataatcaggcccctgcattctagccctgggttgacagagtgagaccc
s panTro5.chr9                  41692870 391 + 116767853 tcctgaacttaagcaatccacccaccttggccttgcaaagggctgagattacaggtgtgagccaccatgcctggGCAACATCGAGTTTGATTTAAAGAAATTGATT---------------AGggc--tgggt-gtggtggtgcacactgcttgtctcaacactttgggaggcagaagtggaagatttacttgagcccaggagcttgagaccagcctgggcagtataatgagaccttgtctctacaaagataacaataaaaacattagcatggcatgatggtatgcgcctgtagttccagctattcaggaagttgaagt--gggaagattgcttgaggtcagcagttcgagaccacagtgagccataatcaggcccctgcattctagccctgcattgacagagtgagaccc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96036376 391 - 114479721 tcctgaacttaagcaatccacccaccttggccttgcaaagggctgagattacaggtgtgagccaccatgcctggGCAACATCGAGTTTGATTTAAAGAAGTTGATT---------------AGggc--tgggt-gtggtggtgcacactgcttgtctcaacactttgggaggcagaagtggaagatttacttgagcccaggagcttgagaccagcctgagcagtataatgagaccttgtctctacaaagataacaataaaaacattagcatggcatgatggtatgcgcctgtagttccagctattcaggaagttgaagt--gggaagattgcttgaggtcagcagttcgagaccacagtgagccataatcaggcccctgcattctagccctgcattgacagagtgagaccc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           75699 390 -    416926 tcctgaactcaagcaatccacccaccttggccttgcaaagggctgagattacaggtgtgagccaccatgcctggGCAACATTGAGATTGATTTAAAGAAATTGATT---------------AGggc--tgggt-gtggtggtgcacactgcttatctcaacactttgggaggcagaagtggaagatttacttgagcccaggagtttgagaccagcctgggcagtataatgaggccttgtctctacaaagataacaataaaaacattagcatggcatgatggtacgcacctgtagttccagctatt-aggaagttgaggt--gggaagattgcttgaggtcaggagtttgagaccacagtgagccataatcaggcccctgcattctagccctgggttgacagagtgagaccc
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40812987 393 + 122973662 tcctgaactcaagcaatccacccaccttggcctggcaaagggctgggattacaggtgtgagccaccatgcctggGCAACATTGAGGTTTATTTAAAGAAATTGGTT---------------AGGGCTGTGTgt-gtggtggtgcacactggttatctcaacacttcgggaggcagaagtgggaggtttacttgagcctaggagtttgagaccagcctgggcaatatagtgaggccttgtctctacaaaaataacaataaaaacattagcctggcatgatggtatgcacctgtagttccagctatttgagaagttgaggt--gggaagattgctcgaggtcaggaggttgagactgcagtgagccataatcatgccactgcattctagccctgggttgacagagtgagaccc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111077805 390 - 111193037 tcctgaactcaagcaatccactcaccttggccttgcaaagggctgggattacagatatgagccaccatgtctggGCAACATTGGGGTTTATTTAAAGGAATTGATTAC---------------ggc--tgggt-gtgctagtgcacactggttatctcaacagtttgggaggcagaagtggaaggtttgcttgagcctaggaggttgagaccagcctgggcagtataatgaggccttgtctctacaaaagtaacaataaatacattagcctggcatgatggtatgcacctgtagttccagcta-tcaggaagttgaggt--gggaagattgcctgaggtcgggaggttgagaccacagtgagtcataatcatgccactgcattctagccctgggttgacagaatgagaccc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          347691 406 +    434444 tcctgaactcaagcaatccacccatcttggcctggcaaagggctgggattacaggtgtgagccaccatgcctggGCAATATTAAGGTTTATTTAAAGGAATTGATTAAATAAACCTGGCAAAGggc--tgggt-gtggtggtgtacagtgattatctcaacactttgggagccagaagtagaaggtttccttgagcctaggagtttgagaccagcctgggcaatataatgaggctttgcgtctacaaaaataacaataaaaacattagcctgacatgatggtatgcacctgtagttctagctgttcgggaagttgaggt--gggaagattgcttgaagtcaggaggttgaaactgtagtgagccataatcataccactgcgttctagctctggtttgacagagtgagaccc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          395011 406 -    438202 tcctgaactcaagcaatccacccaccttggcctggcaaagggctgggattacaggtgtgagccaccatgcctggGCAATATTGAGGTTTATTTAAAGGAATTGATTAAATAAACCTGGCAAAGggc--tgggt-gtggtggtgtacagtggttatctcaacactttgggagccagaagtagaaggtttccttgagcctaggagtttgagaccagcctgggcaatataatgaggctctgcctctacaaaaataacaataaaaacgttagcctgacatggtggtacgcacctgtagttctagctgttcgggaatttgaggt--gggaagattgcttgaagtcaggaggttgaaactgtagtgagccataatcataccactgcgttctagctctggtttgacagagtgagaccc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66444774 394 +  90373283 tcctgaactcaagcaatccacccaccttggcctggcaaagggctgggattacaggtgtgagccaccatgccTAGGCAATATTGAGGTTTATTTAAAGGAATTGATT---------------AGGGC--TGTGTGgtggtggtgcacactggttatctcaccactttgggaggcagaagtagaaggtttccttgagcctaggagtttgagaccagcctgggcaatataatgaggctttgtctctacaaaaataacaataaaaacattagcctgtcatgatggtatgcacctgtagttctagctgttcgggaagttgaggtgggggaagattgcttgaagtcaggaggttgagactgtagtgagccataataatgcaactgcattctagccctggtttgacagagtgagaccc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1495208 406 -   1547936 tcctgaactcaagcaatccacccaccttggcctggcaaagggctgggattacaggtgtgagccaccatgcctggGCAATATTGAGGTTTATTTAAAGGAATTGATTAAATAAACCTGGCAAAGggc--tgggt-gtggtggtgtacagtggttatctcaacactttgggagccagaagtagaaggtttccttgagcctaggagtttgagaccagcctgggcaatataatgaggctttgcctctacaaaaataacaataaaaacgttagcctgacatggtggtatgcacctgtagttctagctgttcgggaagttgaggt--aggaagattgcttgaagtcaggaggttgaaactgtagtgagccataatcataccactgcgttctagctctggtttgacagagtgagaccc
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64634977 388 -  72162052 tcctgagttcaagccatccacccaccctggccttgccaagagctaggattacagatgtgagccaccgtgcctggccTAAATTAGGGTTTATTTAAATAAATTGATT---------------GGggc--tgact-gtggtggtgcacactggttatcgcaacactttaggaggcagaaatggaaggattacttgagcccaggagtttgacaccagcctgggcaatatagtgaggccttgtctctacaaaaataacaataaaaacattagcctggcatgatggtatacccctgcagttctagctactcaggaagttgaggt---ggaagactgcttgaggtcgggaggttgaggccacagtgaaccacaatcatgcgactgcattctagccctgga--gacagagtaagactc
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1052297 388 +   1314817 tcctgagctcaagcaatccacccaccttggccttgcaaagggctgggataacagatgggagccaccatgcctggccTACATTGAGGTTTATTTAAATGAATTGATT---------------AGggc--tgggt-gtggtggcgcaccctggttacctcaacactttaggaagcagaaatggaaggattacttgagcccaggagtttgagaccagcctgggcaatatagtgaggccttgtccctacaaaaataacaataaaaacattagcctggcatgatggtatacccctgcagttctagctcctcaggaagttgaggc---ggaagattgcttgaggtcaggaggctgaggccacagtgaaccacagtcatgccactgcattctagccctggg--gacagagtaagaccc
i cebCap1.NW_016107851v1       I 4378 I 23
s aotNan1.NW_018488791v1         6410558 388 -   6597006 tcctgagctcaagcaatccacccaccttggccttgcaaagggctgggattacagatgtgagccaccatgcgtggccTAAATTGAGGTTTATTTAAACAAATTGATT---------------AGggc--tgggt-gtggtggtgcacatcggttatctcaatactttaggaggcagaaatggaaggattacttgagcccaggagtttgagaccagcctgggcaatatagtgaggccttgtctctacaaaaataacaataaaaacattagcctggcatgatggtatacccctgcagttctagctactcaggaagttgaggt---agaagattgcttgaggtcaggaggttgaggccacagtgaaccacaatcatgccactgcattctagccctaga--gacagagtaagaccc
i aotNan1.NW_018488791v1       C 0 C 0
e canFam3.chr2                  79086798 9956 -  85426708 I
e otoGar3.GL873538              19640372 6129 -  27850971 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=74730.000000
s hg38.chr14_GL000009v2_random     19072 17 +    201709 agtttcataaaaaGAGA
s panTro5.chr9                  41693261 16 + 116767853 agtttcataaaaaga-a
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96036767 17 - 114479721 agtttcataaaaaGAGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76089 17 -    416926 agtttcataaaaaGAGA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40813380 17 + 122973662 agtttcataaaaaGCGA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078195 17 - 111193037 agtttcataataagaga
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348097 17 +    434444 agtttcataaaaaGAGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          395417 17 -    438202 agtttcataaaaaGAGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445168 17 +  90373283 agtttcataaaaaGAGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1495614 17 -   1547936 agtttcataaaaaGAGA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64635365 17 -  72162052 tgtttTTTTAGAAAAGA
i saiBol1.JH378105             C 0 I 5
s aotNan1.NW_018488791v1         6410946 17 -   6597006 tgtttttttaaaaaaga
i aotNan1.NW_018488791v1       C 0 I 5
e canFam3.chr2                  79086798 9956 -  85426708 I
e otoGar3.GL873538              19640372 6129 -  27850971 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e cebCap1.NW_016107851v1         1052685 23 +   1314817 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1052117.000000
s hg38.chr14_GL000009v2_random     19089 183 +    201709 TTGATAAGAAACTCTTGATGCAACTCATTATAATTTT--AAATGGAAACTAATTCTTGATATTACCTTAGCAGTGTGTCCCCAAGAAAGTGTCAGAGCCTTTACGTGGACCTTCTCATGAaaaaggaaacagaatagtcaat------ggaaaaggaaaaggTGAGAACCGTATTTTATTTAAAAAGTCAT
s panTro5.chr9                  41693277 184 + 116767853 TTGATAAGAAACTCTTGATGCAACTCATCATAATTTT-AAAATGGAAACTAATTCTTGATATTACCTTAGCAGTGTGTCCCCGAGAAAGTGTCAGAGCCTTTATGTAGACCTTCCCATGAaaaaggaaacagaatagtcaat------ggaaaaggagaaggTGAGAACCATATTTTATTTAAAAAGTCAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96036784 184 - 114479721 TTGATAAGAAACTCTTGATGCAACTCATCATAATTTT-AAAATGGAAACTAATTCTTGATATTACCTTAGCAGTGTGTCCCCGAGAAAGTGTCAGAGCCTTTATGTAGACCTTCCCATGAaaaaggaaacagaatagtcaat------ggaaaaggagaaggTGAGAACCATATTTTATTTAAAAAGTCAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76106 182 -    416926 TTGATAAGAAACTCTTGATGCAACTCATTATAATTTT-AAAATGGAAACTAATTCTTGATATTACCTTAGCAGTGTGTCCCCGAGAAAGTGTCAGAGCCTTTACCTGGACCTTCGCATG-AAAAGGAAACAGAATAGTCAAT------GG-AAAGGAGAAGGTGAGAACCGTATTTTATTTAAAAAGTCAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40813397 185 + 122973662 TTGATAAGAAACTCTGGATGTAACTCATTATAATTTTTAAAATGGAAACTAATTATTGATATTACCTTAGCAGTATGTCCCTGAGAAAGTGTCAGAGCCTTTACCTGGACCTTCCCATGAaaaaggaaacagaatagtcaat------ggaaaaggagaaggTGAGAACCATGTTTTATTTAAAAAGTCAT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078212 191 - 111193037 aTGATAAGAATCTCTTGATGCAACTCATTATAATTTTTTAAATGGAAACTAACTCTTGATATTTCCTTAGAAGTGTGTCCCCAAGTATGTGTCACAGCCTTTACCTGGACCTTCCCATGAaaaaggcaatggaatagtcagtggaaaaggaaaaggagaaggTGAGAACTGGATTTTGTTTTAAAAGTCAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348114 185 +    434444 TTGATAAGAAACTCTTGATGCAACTTATTATAATTTTTAAAATGGAAACTTTTTCTTGATATTACCTTAGCAGTATGTCCCCGAGAAAGTATCAGAGCCTTTACCTGGACTTTCCCGTGAAAAAGGAAACAGAATAGTCAAT------GCCAAAGGAGAAGGTGAGATTTGTATTTTGTTTAAAAAGTCAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          395434 185 -    438202 TTGATAAGAAACTCTTGATGCAACTTCTTATAATTTTTAAAATGGAAACTTTTTCTTGATATTACCTTAGCAGTGTGTCCCCGAGAAAGTGTCAGAGCCTTTACCTGGACTTTCCCGTGAAAAGGGAAACAGAATAGTCAAT------GCAAAAGGAGAACGTGAGATTCGTATTTTGTTTAAAAAGTCAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445185 185 +  90373283 TTGATAAGAAACTCTTGATGCAACTCATTATAATTTTTTAAATGGAAACTAATTCTTGATATTTCCTTAGCAGTGTGTCCCCGAGAAAGTGTCAGAGCCTTTACCTGGACTTTCCCATGAaaaaggaaacagaatagtcagt------ggaaaaggaaaaggTGAGATTCGTATTTTGTTTAAAAAGTCAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1495631 185 -   1547936 TTGATAAGAAACTCTTGATGCAACTTATTATAATTTTTAAAATGGAAACTTTTTCTTGATATTACCTTAGCAGTGTGTCCCCGAGAAAGTGTCAGAGCCTTTACCTGGACTTTCCCGTGAAAAGGGAAACAGAATAGTCAAT------GCAAAAGGAGAACGTGAGATTCGTATTTTGTTTAAAAAGTCAT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64635387 177 -  72162052 TTGATAAG-----TTTGATGCAACTCATTATAATTTTTAAAATGAAAACTCACTCTTTATATTCCCTTAGCAATGTGTTCCCGAGAAAGTGTCAGAGCCTTTACCTGGACCTTCCGATGATAAAGGAAACAGTGTAGTCAAC------GGAAAAA---AAGGTGAGAATCATATTTTATTTAAAAAGTCAT
i saiBol1.JH378105             I 5 C 0
s cebCap1.NW_016107851v1         1052708 180 +   1314817 TTGATAAG-----TTTGATGCAACTCATTATAATTTTTAGAATGAAAACTCACTCTTTATATTACCTTAGCAGTGTGTCCCCGAGAAAGTGTCAGAGCCTTTACCTGGACCTTCCAATGATAAAGGAAACAGTGTAGTCAAC------GGAAAAAAAGAAGGTGAGAACTGTATTTTATTTAAAAAGTCAT
i cebCap1.NW_016107851v1       I 23 C 0
s aotNan1.NW_018488791v1         6410968 177 -   6597006 TTGATAAG-----TTTGATGCAACTCATTCTAATTTTTAAAATGAAAACTCACTCTTTATATTACCTTAGCAGTGTGTTCCCGAGAAAGTGTCAGAGCCTTTACCTGGAACTTCCGATGATAAAGGAAGCAGTGTAGTCAAT------GGAAAAA---AAGGTGAGAATCATATTTTATTTAAAAAGTCAT
i aotNan1.NW_018488791v1       I 5 C 0
e canFam3.chr2                  79086798 9956 -  85426708 I
e otoGar3.GL873538              19640372 6129 -  27850971 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=5096.000000
s hg38.chr14_GL000009v2_random     19272 2 +    201709 TT
s panTro5.chr9                  41693461 2 + 116767853 TT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96036968 2 - 114479721 TT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76288 2 -    416926 TT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40813582 2 + 122973662 TT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078403 2 - 111193037 TT
i macFas5.chr13                C 0 C 0
s saiBol1.JH378105              64635564 2 -  72162052 TT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1052888 2 +   1314817 TT
i cebCap1.NW_016107851v1       C 0 C 0
e aotNan1.NW_018488791v1         6411145 0 -   6597006 C
e canFam3.chr2                  79086798 9956 -  85426708 I
e otoGar3.GL873538              19640372 6129 -  27850971 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e manLeu1.NW_012105442v1         1495816 0 -   1547936 C
e chlSab2.chr2                  66445370 0 +  90373283 C
e cerAty1.NW_012002921v1          395619 0 -    438202 C
e macNem1.NW_012012823v1          348299 0 +    434444 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=4230.000000
s hg38.chr14_GL000009v2_random     19274 3 +    201709 GAT
s panTro5.chr9                  41693463 3 + 116767853 GAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96036970 3 - 114479721 GAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76290 3 -    416926 GAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40813584 3 + 122973662 GAT
i nomLeu3.chr1a                C 0 C 0
s cebCap1.NW_016107851v1         1052890 3 +   1314817 GAT
i cebCap1.NW_016107851v1       C 0 I 10
e aotNan1.NW_018488791v1         6411145 0 -   6597006 C
e canFam3.chr2                  79086798 9956 -  85426708 I
e otoGar3.GL873538              19640372 6129 -  27850971 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e saiBol1.JH378105              64635566 0 -  72162052 C
e manLeu1.NW_012105442v1         1495816 0 -   1547936 C
e chlSab2.chr2                  66445370 0 +  90373283 C
e cerAty1.NW_012002921v1          395619 0 -    438202 C
e macNem1.NW_012012823v1          348299 0 +    434444 C
e macFas5.chr13                111078405 0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=58022.000000
s hg38.chr14_GL000009v2_random     19277 120 +    201709 GGAgaccaggcgcggtggctcacgcctgtaattccagcactttgggagccctaggtgggcgggtaatgaggtcaggagatcaagaccatcctggctaacatggtgaaaccccatctctac
s panTro5.chr9                  41693466 120 + 116767853 GGAggcctcacacagtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctac
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96036973 120 - 114479721 GGAggcctcgcacagtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctac
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76293 119 -    416926 GGAggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtggg-ggatcacgaggtcaggagatccagaccatcctggataacatggtgaaaccccatctctac
i gorGor5.CYUI01015896v1       C 0 C 0
e aotNan1.NW_018488791v1         6411145   0 -   6597006 C
e canFam3.chr2                  79086798 9956 -  85426708 I
e otoGar3.GL873538              19640372 6129 -  27850971 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e cebCap1.NW_016107851v1         1052893  10 +   1314817 I
e saiBol1.JH378105              64635566   0 -  72162052 C
e manLeu1.NW_012105442v1         1495816   0 -   1547936 C
e chlSab2.chr2                  66445370   0 +  90373283 C
e cerAty1.NW_012002921v1          395619   0 -    438202 C
e macNem1.NW_012012823v1          348299   0 +    434444 C
e macFas5.chr13                111078405   0 - 111193037 C
e nomLeu3.chr1a                 40813587   0 + 122973662 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=99446.000000
s hg38.chr14_GL000009v2_random     19397 171 +    201709 taaaaacacgaaaaattagccgggcatggtggcaggtgcctgtagtctcagcaactcaggaggctgaggcaggaggatggtgtgaacctgggaggtggagcttgcagtgagcggagatcgtgccactgcactccagcctgggtgacagagtgagactccatctcaaaaaa--------a
s panTro5.chr9                  41693586 171 + 116767853 taaaaacacaaaaaattagccgggcatggtggcgggtgcctgtagtcccagctacttgggaggctgaggcaggaggatggtgtgaacctgggaggtggagcttgcagtcagcggagatcctgccactgcactccagcctgggtgacagagtgagactccatctcaaaaaa--------a
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96037093 171 - 114479721 taaaaacacaaaaaattagctgggcatggtggcgggtgcctgtagtcccagctacttgggaggctgaggcaggaggatggtgtgaacctgggaggtggagcttgcagtcagcggagatcctgccactgcactccagcctgggtgacagagtgagactccatctcaaaaaa--------a
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76412 179 -    416926 taaaaatacaaaaaactagccaggtgttgttgtgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcttgaacccgggaggcggagcttgcagtgagcggagataccaccactgcattccaccctgggcgacagagcgagactccgtctcagaaaaaacaaaaca
i gorGor5.CYUI01015896v1       C 0 C 0
s otoGar3.GL873538              19646501 135 -  27850971 TAAAAACATG-AGCATTggctaggcatggtggctcatacctataatcctagcattttgagaggttgaggcagaaggatggcttcaatctaggagtttgaggttgctataagc-----------------------------------tagtctgactctgtctcaaaaaa--------c
i otoGar3.GL873538             I 6129 C 0
e aotNan1.NW_018488791v1         6411145   0 -   6597006 C
e canFam3.chr2                  79086798 9956 -  85426708 I
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e cebCap1.NW_016107851v1         1052893  10 +   1314817 I
e saiBol1.JH378105              64635566   0 -  72162052 C
e manLeu1.NW_012105442v1         1495816   0 -   1547936 C
e chlSab2.chr2                  66445370   0 +  90373283 C
e cerAty1.NW_012002921v1          395619   0 -    438202 C
e macNem1.NW_012012823v1          348299   0 +    434444 C
e macFas5.chr13                111078405   0 - 111193037 C
e nomLeu3.chr1a                 40813587   0 + 122973662 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=6010.000000
s hg38.chr14_GL000009v2_random     19568 9 +    201709 aaaaaGGCA
s panTro5.chr9                  41693757 9 + 116767853 aaaaaGTCA
i panTro5.chr9                 C 0 I 1
s panPan2.chr13                 96037264 9 - 114479721 aaaaaGTCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76591 9 -    416926 aaaaaGTCA
i gorGor5.CYUI01015896v1       C 0 I 1
s otoGar3.GL873538              19646636 4 -  27850971 agaa-----
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79096754 9 -  85426708 AAAAAGTCA
i canFam3.chr2                 I 9956 C 0
e aotNan1.NW_018488791v1         6411145 0 -   6597006 C
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e cebCap1.NW_016107851v1         1052893 10 +   1314817 I
e saiBol1.JH378105              64635566 0 -  72162052 C
e manLeu1.NW_012105442v1         1495816 0 -   1547936 C
e chlSab2.chr2                  66445370 0 +  90373283 C
e cerAty1.NW_012002921v1          395619 0 -    438202 C
e macNem1.NW_012012823v1          348299 0 +    434444 C
e macFas5.chr13                111078405 0 - 111193037 C
e nomLeu3.chr1a                 40813587 0 + 122973662 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=8190.000000
s hg38.chr14_GL000009v2_random     19577 2 +    201709 TT
s panTro5.chr9                  41693767 2 + 116767853 TT
i panTro5.chr9                 I 1 C 0
s panPan2.chr13                 96037273 2 - 114479721 TT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76601 2 -    416926 TT
i gorGor5.CYUI01015896v1       I 1 C 0
s macNem1.NW_012012823v1          348299 2 +    434444 TT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          395619 2 -    438202 TT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445370 2 +  90373283 TT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1495816 2 -   1547936 TT
i manLeu1.NW_012105442v1       C 0 C 0
s aotNan1.NW_018488791v1         6411145 2 -   6597006 TT
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79096763 2 -  85426708 TT
i canFam3.chr2                 C 0 I 1
e otoGar3.GL873538              19646640 0 -  27850971 C
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e cebCap1.NW_016107851v1         1052893 10 +   1314817 I
e saiBol1.JH378105              64635566 0 -  72162052 C
e macFas5.chr13                111078405 0 - 111193037 C
e nomLeu3.chr1a                 40813587 0 + 122973662 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=49503.000000
s hg38.chr14_GL000009v2_random     19579 9 +    201709 GATGGAATG
s panTro5.chr9                  41693769 9 + 116767853 GATGGAATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96037275 9 - 114479721 GATGGAATG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76603 9 -    416926 GATGGAATG
i gorGor5.CYUI01015896v1       C 0 C 0
s macFas5.chr13                111078405 9 - 111193037 AATGGAATG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348301 9 +    434444 GATGGAATG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          395621 9 -    438202 GATGGAATG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445372 9 +  90373283 GATGGAATG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1495818 9 -   1547936 GATGGAATG
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64635566 9 -  72162052 GATTGAATG
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6411147 9 -   6597006 GATTGAATG
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79096766 9 -  85426708 GATAGAATG
i canFam3.chr2                 I 1 C 0
e otoGar3.GL873538              19646640 0 -  27850971 C
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e cebCap1.NW_016107851v1         1052893 10 +   1314817 I
e nomLeu3.chr1a                 40813587 0 + 122973662 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=25006.000000
s hg38.chr14_GL000009v2_random     19588 5 +    201709 TTTCT
s panTro5.chr9                  41693778 5 + 116767853 TTTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96037284 5 - 114479721 TTTCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76612 5 -    416926 TTTCT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40813587 5 + 122973662 TTTTT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078414 5 - 111193037 TTTCT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348310 5 +    434444 TTTCT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          395630 5 -    438202 TTTCT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445381 5 +  90373283 TTTCT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1495827 5 -   1547936 TTTCT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64635575 5 -  72162052 ATTCT
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6411156 5 -   6597006 ATTCT
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79096775 5 -  85426708 TTGAT
i canFam3.chr2                 C 0 C 0
e otoGar3.GL873538              19646640 0 -  27850971 C
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e cebCap1.NW_016107851v1         1052893 10 +   1314817 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=629400.000000
s hg38.chr14_GL000009v2_random     19593 104 +    201709 TTTAAAATATGAGCACTAATAGAGTTTAATAGC-------------------------TAAAG-AAAATGTCCTATTAACTGTATCAT-AAGTAAAAGAGAAATGAAATGGTGATAAGTGGTGTCTCTAAC
s panTro5.chr9                  41693783 129 + 116767853 TTGAAAATACGAGCACTAATAGAGTCTAATAGCTAAAGAAAATGTCCTATTAACTGTATAAAG-AAAATGTCCTATTAACTGTATAAT-AAGTAAAGGAGAAATGAAATGGTGATAAGTTGTGTCTCTAAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96037289 129 - 114479721 TTGAAAATATGAGCACTAATAGAGTCTAATAGCTAAAGAAAATGTCCTATTAACTGTATAAAG-AAAATGTCCTATTAACTGTATAAT-AAGTAAAGGAGAAATGAAATGGTGATAAGTTGTGTCTCTAAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76617 104 -    416926 TTGAAAATATGAGCACCAATAGAGTGTAATAGC-------------------------TAAAG-AAAGTGTCCTATTAACTGTATAAT-AAGTAAAGGAGAAGTGAAATGGTGATAAGTTGTGTCTCTAAC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40813592 104 + 122973662 TTTTAAATATGAGCACCCATATAGTCTAATAGC-------------------------TAAAG-AAAATGTCCTGTTAACTGTGTAAT-AAGTAAAGGAGAAGTAAAATGGTGATAAGTTGTGTCTCTAAC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078419  89 - 111193037 TTTAGAATATGAGCACTAATATAGTCTACTAGC-------------------------TAAAG-AAAATGTCCTATTAAC--TATAAT-AAGTAAAGGAGAATTAAAATGGTGA-------------TAAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348315 104 +    434444 TTTAAAATATAAGCACTAATATAGTCGAATAGC-------------------------TAAAG-AAAATGTCCCGTTAACTGTATAAT-AAGTAAAGGAGAAGTAAAATGGTGATAAGTTGTGTCTCTAAC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          395635 104 -    438202 TTTAAAATATAAGCACTAATATAGTCGAATAGC-------------------------TAAAG-AAAATGTCCCATTAACTGTATAAT-AAGTAAAGGAGAAGTAAAATGGTGATAAGTTGTGTCTCTAAC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445386 104 +  90373283 TTTAAAATATAAGCACTAATATAGTCGAATAGC-------------------------TAAAG-AAAATGTCCCGTTAACTGTATAAT-AAGTAAAGGAGAGGTAAAATGGTGATAAGTTTTGTCTCTAAC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1495832 104 -   1547936 TTTAAAATATAAGCACTAATATAGTCGAATAGC-------------------------TAAAG-AAAATGTCCCGTTAACTGTATAAT-AAGTAAAGGAGAAGTAAAATGGTGATAAGTTGTGTCTCTAAC
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64635580  99 -  72162052 TTAAAAATATGAGCACTAATATATTCTAATAGC-------------------------TAAAG-AAAATGTCCTATTAAATGTATAAT-AAGC-----AGGAGTAACATGGTGATAAGTTGTGTCTCTAAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1052903  99 +   1314817 TTTAAAATATGAGCACTAATATATTCTAACAGC-------------------------TAAAG-AAAATGTCCTATTAAGTGTACAAC-AAGT-----AGGAGTAACATGGTGATAAGTCGTGTCTCTAAT
i cebCap1.NW_016107851v1       I 10 C 0
s aotNan1.NW_018488791v1         6411161  99 -   6597006 TTAAAAATATGACCACTAATATATTCTAATAGC-------------------------TAAAC-AAAATGTCCTATTAAGTGTATAAT-AAGT-----AGGAGTAACATGATGATAAGTTGTGTCTCTAAT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19646640 104 -  27850971 --caaaaCAAAAGCACTGATTTATTCTAATAGC-------------------------CAGAGAAAAATCACCTATTAAATGTATAAGAAAATAGAAGAGAAGTAAGATCGTGTAAGTCGGTATGTTTTAT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79096780 102 -  85426708 -TCAAAACAGAAATTCTGATGTATCCTAATATC-------------------------CAAAG-AAAATCACCTATTAAATGTGTAGA-AAGGAGAA-AGATGTGAAAAGGAGGTAAGTTCTATATTTTAT
i canFam3.chr2                 C 0 C 0
e colAng1.NW_012121088v1            9162 1885 +    168452 M
e dasNov3.JH570393               1703784 16412 -   2296528 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=687216.000000
s hg38.chr14_GL000009v2_random     19697 80 +    201709 CAAGGGTCAGCAGTTGATTCTATTGGAAGTACCACTAAAGGAGGTGAGTTATGAGTTCCATTTTAACATACT-CTAAGACC
s panTro5.chr9                  41693912 80 + 116767853 CAAGGGTCAGCAGTTGATTCTATTGGGAGTACCACTAAAGGAGCTGAGTTATGAGTTCCATTTTAAGATACT-CTAAGACC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96037418 80 - 114479721 CAAGGGTCAGCAGTTGATTCTATTGGGAGTACCACTAAAGGAGCTGAGTTATGAGTTCCATTTTAAGATACT-CTAAGACC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76721 80 -    416926 CAAGGGTCAGCAGTTGATTCTATTGGGAGTACCACTAAAGGAGCTGAGTTGTGAGTTCCATTTTAAGATACT-CTAAGACC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40813696 80 + 122973662 CAAGGGTCAGCAGTTGATTCTATTGGGAGTACCACTAAAGGAACTGAGTTATGAGTTCCATTTTAAGATACT-CTAAGACC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078508 80 - 111193037 CAAGGGTCAGCTATTGATTCTATTGGGAGCACCACTGAAGGAGCTGAGTTCTGAGTTCCATTTTAAGATACT-CTAAAAAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348419 80 +    434444 CAAGGGTCAGCAGTTGATTCTATTGGGAATACCACTAAAGGAGCTGAGTTACGAGCTCCATTTTAAGACACT-CTAAGACC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          395739 80 -    438202 CCAGGGTCAGCAGTTGATTCTATTGGGAGTACCACTAAAGGAGCTGAGTTACGAGCTCCATTTTAAGACACT-CTAAGACC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445490 80 +  90373283 CAAGGGTCAGCAGTTGATTCTATTGGGAGTACCACTAAAGGAGCTGAGTTATGAGCTCCATTTTAAGACACT-CTAAGACC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1495936 80 -   1547936 CAAGGGTCAGCAGTTGATTCTATTGGGAGTACCACTAAAGGAGCTGAGTTACGAGCTCCATTTGAAGACACT-CTAAGACC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11074 80 +    168452 CAAGGGTCAGCTATTGATTCTATTGGGAGCACCGCTGAAGGAGCTGAGTCATGAGTTCCATTTTAAGATACT-CTAAAAAC
i colAng1.NW_012121088v1       M 1885 C 0
s saiBol1.JH378105              64635679 78 -  72162052 CAGAGGTCAGCAG--GATTCTATCGGGAGTGCCAC-AAAGGAGCTGAGTTATTACTTCCATTTTAAGATACTCTTAAGACC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1053002 80 +   1314817 CAGGGGTCAGCAGTTGATTCTATGGAGAGTGCCGCTAAAGGAGCTGAGTTATTAGTTCCATTTTAAGATGCT-GTAAGACC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6411260 80 -   6597006 CAGGGGTCAGCAGTTGATTCTATCGAGAGTGCCACTAAAGGAGCTGAGTTATTAGTTCCATTTTAAGATACT-CTAAGACC
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19646744 77 -  27850971 CAGGTGTCAGTAGCAGAGTAAACTGAGAGTGCCACTAAAGGACCTGAATTC---ATTCTATTTCAAGATGCT-CTAAGACC
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79096882 80 -  85426708 CAGGTGTCAGCTACAGATTAAATTGAGAGTACCACTAAAGGAGCTAAATTACTGGTTCCATTTCCAGGTATT-CCAAGACC
i canFam3.chr2                 C 0 C 0
e dasNov3.JH570393               1703784 16412 -   2296528 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=187319.000000
s hg38.chr14_GL000009v2_random     19777 19 +    201709 Tgaggcaagtcaggagaga
s panTro5.chr9                  41693992 19 + 116767853 Tgaggcaagtcaggagaga
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96037498 19 - 114479721 TGAGGCAAGTCAGGAGAGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76801 19 -    416926 Tgaggcaagttaggagaga
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40813776 19 + 122973662 TGAGACAAGTCAGGAGAGA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078588 19 - 111193037 TGAGGTAAGTCAGGAGAGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348499 19 +    434444 TGAGGCAAGTCAGGAAAGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          395819 19 -    438202 TGAGGCAAGTCAGGAAAGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445570 19 +  90373283 TGAAGCAAGTCAGGAAAGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496016 19 -   1547936 TGAGGCAAGTCAGGAAAGA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11154 19 +    168452 TGAGGCAAGTCAGGAGAGA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64635757 19 -  72162052 TGAGGCAAGTCAGGAAAGA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1053082 19 +   1314817 TGAGGCAAGGCAGGAAAGG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6411340 19 -   6597006 TGAGGCAAGTCAGGAAAGA
i aotNan1.NW_018488791v1       C 0 I 17
s otoGar3.GL873538              19646821 19 -  27850971 TGAGGAAAGTTAGGAAATC
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79096962 19 -  85426708 TAAGGAATGTCTGGAAATA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1720196 19 -   2296528 TAAGGAAAGTTGGGAAATA
i dasNov3.JH570393             I 16412 C 0
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=724548.000000
s hg38.chr14_GL000009v2_random     19796 138 +    201709 gggaagagg----aaatgaataaaaga-gaaagaaagaatgaggagggcagagtgtacatggaa-----T--------AAA------TAAAAA-A----AAGTGGATGTATGTAATGGAGGGTAGTAAAGTCAAATTGATCTGTAGAAGAAGGAAGAACAGGGTGTT
s panTro5.chr9                  41694011 139 + 116767853 gggaagagg----aaatgaataaaaga-gaaagaAACAATGAGGAGGGCAGCGTGTATATGGAA-----T--------AAA--T---TAAAAA-A----ACACGGATGTATGTAATGGAGGGTAGTAAAGTCAAATTGATCTGTAGAAGAAGGAAGAACAGGGTGTT
i panTro5.chr9                 C 0 I 1775
s panPan2.chr13                 96037517 139 - 114479721 GGGAAGAGG----AAATGAATAAAAGA-GAAAGAAACAATGAGGAGGGCAGCGTGTACATGGGA-----T--------AAA--T---TAAAAA-A----ATGTGGATGTATGTAATGGAGGGTAGTAAAGTCAAATTGATCTGTAGAAGAAGGAAGAACAGTGTGTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76820 141 -    416926 gggaagagg----aaatgaat-aaaga-gaaagaaagaatgaggagagcggaGTGTACATGGAA-----T--------AAA------TAAAAA-AGCATATGCAGAGGTAAGTAATAGAGGATAGTAAAGGCAAATTGATCTGTAGAAGAAGGAAGAACATGGTGTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40813795 141 + 122973662 GGGAAGAGG----AAATGAATAAAAGA-GAAAGAAAGAATGAGGAGGACAGAGAGTACATGGAA-----T--------AAATTT---TAAAAA-T----ATGCGGGTGTGTGTAGTGGAGGATAGTAAAGTCAAATTGTTCTGTAGAAGAAGGAAGAACAGGGTGTT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078607 144 - 111193037 AGGAGGAGG----AAATGAATAAAAGA-GAAAGAAAGAATGAAGAGGGCAGAGTGTACACGGAATAAATTT------TAAA-------AAGCA-T----ATGCGGGTATATGTAATGGAAGGTGGTAAAGTCAAATTGATCTGTAGAAGAAGGAAGAACAGGGTGTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348518 133 +    434444 GGGAAT-GG----AAATGAATAAAAG-----AGAAAGAATGAGGAGGGCAGAGTGTACATGGAA-----TT------TAAA-------AAAAA------ATGCGGGTGTATGTAATGGAGGGTAGTAAACTCAAATTGTTCTGTAGAAGGAGGAAGAACATGGTGTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          395838 135 -    438202 GGGAAT-GG----AAATCAATAAAAG-----AGAAAGAATGAGGAGGGCAGAGTGTACAGGGAA-----TT------AAAA-------AAAAAAA----ATGCGGGTGTATGTAATGGAGGGTAGTAAACTCAAATTGTTCTGTAGAAGAAGGAAGAACATGGTGTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445589 132 +  90373283 GGGAAT-GG----AAATGAACAAAAG-----AGAAAGAATGAGGAGGGCAGAGTGTACATGGAA-----T--------AAA-------TAAAA-T----ATGCGGGTGTATGTAATGGAGGGTGGTAAACTCAAATTGTTCTGTATAAGAAGGAAGAACAGGGTGTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496035 134 -   1547936 GGGAAT-GG----AAATGAATAAAAG-----AGAAAGAATGAGGAGGGCAGAGTGTACATGGAA-----TT------AAAA-------AAAAA-A----ATGCGGGTGTATGTAATGGAGGGTAGTAAACTCAAATTGTTCTGTAGAAGAAGGAAGAACATGGTGTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11173 143 +    168452 GGGAGG-AG----GACATAATAAAAGG-GAAAGAAAGAATGAAGAGGGCAGAGTGTACATGGAATAAATTT------TAAA-------AAGCG-T----ATGTGGGTATGTGTAATGGAAGGTAGTAAAGTCAAATTGATCTGTAGAAGAAGGAAGAACAGGGTGTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64635776 142 -  72162052 GGGAAGAGG----AAATGAACGAAAGA-GGAAGAAAGAATAAGGAGGGCAGAGTGTACACGGAA-----TAAATGAAAAAA-------AAAAA-T----ATGCGGGTGTATGGAATGGAGGGTAGGAGAGTCAAACTGATCTGT---AGAAGGAAGAGCAGGGTGTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1053101 144 +   1314817 GGGAAGAGGAAATAAATGAATGAAAGA-GGAAGAAAGAATGAGGAGGGCAGAGTGTACATGGAA-----TAAATG--AAGA-------AAAAA-T----ATGCGGGTGTATGGAATGGAGGGTAGTGAAGTCAAATTGATCTAT---AGAAGGAAGAGCAGAGTGTT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19646840 144 -  27850971 AAGAAGAGG----AAAGGAGTAAAAGAGGGAATGAAGAATGAGGAAGGCAGAGAGTATAGGGAA-----TGTATG--ACAG-------GAAAA-G----GAGCAGGTGTATATAATGGAGGGTGGTCAAATAAAAAAGCTCCTTAATGAAAGGAAGAACAGGGCATT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79096981 132 -  85426708 ----GTTGG----AAAAGAGCAAAGAG-----GGAATGATGAGAAAGGCTGAGTGTACAGGGAG-----T--------AAA--TGGATGAAAA-T----AAGTAACACTTTATAATGGAAGGTGATAAAATAAAAGAATTCTTT--TAAAAGGAGAAGCAAACTATT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1720215  87 -   2296528 AAGATGAGG----AAAGGAATAAAGGTAGAGGGAAAGAA----------------------GAA-----T--------GAA------TGAGAA-T---------------------GGA-------------AAATGATTCTTTAGAAGAAGGAAAAACAGACTATT
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=385959.000000
s hg38.chr14_GL000009v2_random     19934 48 +    201709 AGAAATA-G-GAAGGAAGATAAAGTGAGCTTCCAGTACC--AAAATGTGTCA
s panTro5.chr9                  41695925 48 + 116767853 AGAAATA-G-GAAGGAAGATAAAATGAGCTTCCAGTACC--AAAATGTGTCA
i panTro5.chr9                 I 1775 C 0
s panPan2.chr13                 96037656 48 - 114479721 AGAAATA-G-GAAGGAAGATAAAGTGAGCTTCCAGTACC--AAAATATGTCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           76961 48 -    416926 AGAAACA-G-GAAGGAAGATAAAGTGAGCTTCCAGTACC--AAAATGTGTCA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40813936 48 + 122973662 AGAAATA-G-GAAGGAAGATAAAATGAGCTTCCAGTACC--AAAATGTGTGA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078751 48 - 111193037 AGAAATA-G-GAAAGAAGATAAAGTGAGCTTCCAGTACG--AAAATGTGTCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348651 48 +    434444 AGAAATA-G-GAAAGAAGATAAAGTGAGCTTCCAGTACC--AAAATGTGTCA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          395973 48 -    438202 AGAAATA-G-GAAAGAAGATAAAGTGAGCTTCCAGTACC--AAAATGTGTCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445721 48 +  90373283 AGAAATA-G-GAAACAAGATAAAGTGAGCTTCCAGTACC--AAAATGTGTCA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496169 48 -   1547936 CGAAATA-G-GAAAGAAGATAAAGTGAGCTTCCAGTACC--AAAATGTGTCA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11316 48 +    168452 AGAAATA-G-CAAAGAAGATAAAGTGAGCTTCCAGTACC--AAAATGTGTCA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64635918 47 -  72162052 AGAAATA-G-GGAAGAAGGTAAAGTGAACTTCCAGTACC--AAAAC-TGTCA
i saiBol1.JH378105             C 0 I 5
s cebCap1.NW_016107851v1         1053245 47 +   1314817 AGAAATA-G-CGGAGAAGATAAAGTGAGTTTCCAGTACC--AAAAC-TGTCA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19646984 51 -  27850971 AGAAAGG-TCGGAAGAGTATAAAGTGAGCTTCCAGTACCAAAAAATGTGTCA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79097113 49 -  85426708 TGAAATGTG-GGGATAATATCAAGTGAGTTTCCAGTACC--AAAACTTGTCA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1720302 48 -   2296528 AGTAATGCA-GGAAGAATATAAAGTGAGATTCCTATACC---AACTCTGTTA
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=727327.000000
s hg38.chr14_GL000009v2_random     19982 114 +    201709 TATAATTACAGTAACATTTTCCTT-------CTCTT-G-CTGTCATTCTCGCTACTGGGGAGGCATTAAGGATTGAGGTACTTTACCATGCAGACCTGTG--TTTTA-TCTACCATAGATGAACAT
s panTro5.chr9                  41695973 114 + 116767853 TATAATTACAGTAACATTTTCCTT-------CTCTT-G-CTGTCATCCTCACTACTGGGGAGGCATTAAGGATTGAGGTAATTTACCACACAGACCTGTG--TTTTA-TCTACCATAGATGAACAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96037704 114 - 114479721 TATAATTACAGTAACATTTTCCTT-------CTCTT-G-CTGTCATCCTCGCTACTGGGGAGGCATTAAGGATTGAGGTACTTTACCACGCAGACCTGTG--TTTTA-TCTACCATAGATGAACAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           77009 114 -    416926 GAGAATTAGAGTAACATTTTCCTT-------CTCTT-G-CTGTCATCCTCACTACTGGGGAGGCATTAAGGATTGAGGCACCTCACCACACAGACCTGTG--TTTTA-TCTACCATAGATGAACAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40813984 114 + 122973662 GACAATTAGAGTAACATTTTCCTA-------CTCTT-G-CTGTCATCCTCACTACTGGGGAGGCATTAAGGATTGAGGTACTTTACCACACAGACCTGTG--TTTTA-TCTACCATAGATGAACAT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078799 114 - 111193037 GCGAATTAGAGTAACATTTTCCTA-------CTCTT-G-CTGTCATCCTCACTACTGGGGAGGCATTAAGGATTGAAGTACTTTACCAGACAGACCTGGG--TTTTA-TCTACCATAGATGAATAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348699 114 +    434444 GAGAATTAGAGTAACATTTTCCTA-------CTCTT-G-CTGTCATCCTCACTACTGGGAAGGCATTAAGGATTGAGGTACTTTACTACACAGACCTGTG--TTTTA-TCTACCATAGATGAGCAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396021 114 -    438202 GAGAATTAGAGTTACATTTTCCTA-------CTCTT-G-CTGTCATCCTCACTACTGGGAAGGCATTAAGGATTGAGGTACTTTACTACACAGACCTGTG--TTTTA-TCTACCATAGATGAGCAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445769 114 +  90373283 GAGAATTAGAGTAACATTTTCCTA-------CTCTT-G-CTATCATCCTCACTACTGGGAAGGCATTAAGGATTGAGGTACTTTACTACACAGACCTGTG--TTTTA-TCTACCATAGATGAATAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496217 114 -   1547936 GAGAATTAGAGTAACATTTTCCTA-------CTCTT-G-CTGTCATCCTCACTACTGGGAAGGCATTAAGGATTGAGGTACTTTACTACACAGACCTGTG--TTTTA-TCTACCATAGATGAGCAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11364 121 +    168452 GTAAATTAGAGTAACATTTTCCTATTATATTTTCTT-G-CTGTCATCCTTACTACTGGGGAGGCATTAAGGATTGAGGTACTTTACCACACAGACCTGTG--TTTTA-TCTACCATAGACGAATAT
i colAng1.NW_012121088v1       C 0 C 0
s cebCap1.NW_016107851v1         1053292 113 +   1314817 --GAATCAGAGCGACATTTTCCTG-------CTCTT-G-CTGTCATCCTCACTACTGGGGAGGCGTTAAGGATTGAGGTACCGCCCCACACAGATCTGTGT-TTTTA-TTTACCATAGATGAACAT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647035 108 -  27850971 GAGAAGGAAAGGAAAATTTCCTCA-------CATTT-C-CTGTCTTCCTCACTGTTGGG--------AAGGATGGAAGTCCCTGATCATGCAGAGGTATATCTTCTG-TCTGCCACAGAGGAAGAT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79097162 116 -  85426708 GAGTAGTAAACCAAAATTTTCCCA-------CCCTTAA-CAGTTTTTCTCACTGTTGGGAAGACATTAAGGATTGACTTAGCTGATTATGCAGAGCTATG--TCCTAGTCAACTATAAATGTATAT
i canFam3.chr2                 C 0 I 196
s dasNov3.JH570393               1720350  86 -   2296528 GAGAAGTAGAGCATTAATTTCCCT-------CCCTT-GACTGTCTTCCCTACTGTTTGGAAGGCCTGAA-----------------------------TG--ATTTA-TCTACCATGGAGGAATAT
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e saiBol1.JH378105              64635965   5 -  72162052 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=21884.000000
s hg38.chr14_GL000009v2_random     20096 4 +    201709 CACC
s panTro5.chr9                  41696087 4 + 116767853 CACT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96037818 4 - 114479721 CACC
i panPan2.chr13                C 0 I 2694
s gorGor5.CYUI01015896v1           77123 4 -    416926 CACC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814098 4 + 122973662 CACC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078913 4 - 111193037 CACC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348813 4 +    434444 CACC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396135 4 -    438202 CACC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445883 4 +  90373283 CACC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496331 4 -   1547936 CACC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11485 4 +    168452 CACC
i colAng1.NW_012121088v1       C 0 C 0
s cebCap1.NW_016107851v1         1053405 4 +   1314817 CACC
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647143 4 -  27850971 AAAT
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1720436 4 -   2296528 AAGC
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e canFam3.chr2                  79097278 196 -  85426708 I
e saiBol1.JH378105              64635965 5 -  72162052 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=147949.000000
s hg38.chr14_GL000009v2_random     20100 24 +    201709 ATAAATGGTCAGCCATGTATGACT
s panTro5.chr9                  41696091 24 + 116767853 GTAAATGGTCAGCCATGGATGGCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96040516 24 - 114479721 GTAAATGGTCAGCCATGGATGGCT
i panPan2.chr13                I 2694 C 0
s gorGor5.CYUI01015896v1           77127 23 -    416926 -AAAATGGTCAGCCATGTGTGGCT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814102 24 + 122973662 AAAAGTGGTCGGCCATGTATGGCT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078917 24 - 111193037 ATAAATGGTCAGCCATGTATGGCT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348817 24 +    434444 AAAAGTGGTCAGCCATGTATGGCT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396139 24 -    438202 AAAAGTGGTCAGCCATGTATGGCT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445887 24 +  90373283 GTAAATGGTCAGCCATGTATGGCT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496335 24 -   1547936 AAAAGTGGTCAGCCATGTATGGCT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11489 24 +    168452 GTAAATGGTCAGCCATGTATGGCT
i colAng1.NW_012121088v1       C 0 C 0
s cebCap1.NW_016107851v1         1053409 24 +   1314817 ATAAATGGTCAGCCATGTATGGCT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647147 24 -  27850971 ATATATGGTCAGCCATATGTGGAT
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1720440 24 -   2296528 ATATATGGTAGACTATACTTGTAT
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e canFam3.chr2                  79097278 196 -  85426708 I
e saiBol1.JH378105              64635965  5 -  72162052 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=154493.000000
s hg38.chr14_GL000009v2_random     20124 23 +    201709 GTAATTTGTTTTCATAGAAAATG
s panTro5.chr9                  41696115 23 + 116767853 ATAATTTGTTTTTATAGAAAATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96040540 23 - 114479721 ATAATTTGTTTTTATAGAAAATG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           77150 23 -    416926 ATAATTTGTTTTTATAGAAAATG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814126 23 + 122973662 ATAATTTAGTTTTATAGAAAATG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078941 23 - 111193037 ATAATTTAGTTTTATAGAAAATG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348841 23 +    434444 ATAATTTAGTTTTATAGAAAATG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396163 23 -    438202 ATAATTTAGTTTTATAGAAAATG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445911 23 +  90373283 ATAATTTAGTTTTATAGAAAATG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496359 23 -   1547936 ATAATTTAGTTTTATAGAAAATG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11513 23 +    168452 AGAATTTAGTTTTATAGAAAATG
i colAng1.NW_012121088v1       C 0 C 0
s cebCap1.NW_016107851v1         1053433 23 +   1314817 ATAATTTAGTGTTATAGAAAATG
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647171 23 -  27850971 ATAATTTAATGGCATATAAAATG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79097474 23 -  85426708 GTACCTTAATGTCATATAAAATG
i canFam3.chr2                 I 196 C 0
s dasNov3.JH570393               1720464 22 -   2296528 ATAATATAATGTCATAAAAGTT-
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e saiBol1.JH378105              64635965  5 -  72162052 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=3613.000000
s hg38.chr14_GL000009v2_random     20147 3 +    201709 TTG
s panTro5.chr9                  41696138 1 + 116767853 T--
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96040563 1 - 114479721 T--
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           77173 3 -    416926 TTG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814149 3 + 122973662 TTG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078964 3 - 111193037 GTG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348864 3 +    434444 TTG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396186 3 -    438202 TTG
i cerAty1.NW_012002921v1       C 0 C 0
s papAnu3.chr13                 40403484 3 - 128036923 GTG
i papAnu3.chr13                N 0 I 43
s chlSab2.chr2                  66445934 3 +  90373283 TTG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496382 3 -   1547936 TTG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11536 3 +    168452 GTG
i colAng1.NW_012121088v1       C 0 C 0
s cebCap1.NW_016107851v1         1053456 3 +   1314817 TTG
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647194 3 -  27850971 ATG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79097497 3 -  85426708 GTG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1720486 3 -   2296528 TTG
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e saiBol1.JH378105              64635965 5 -  72162052 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=222121.000000
s hg38.chr14_GL000009v2_random     20150 34 +    201709 TAACTTCATAGGATAGTATCAT---------ATTAACATAATT
s panTro5.chr9                  41696139 33 + 116767853 -AACTGCATAGGATAGTATCAT---------ATTAACATAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96040564 33 - 114479721 -AACTGCATAGGATAGTATCAT---------ATTAACATAATT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           77176 43 -    416926 TAACCTCATAGGATAGTATCATATAGGCCAAATTAACATAATT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814152 43 + 122973662 TAACCTCATGGAATAGTATCATATAAGTTAAATTAACATAATT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111078967 43 - 111193037 TAAATTCATGGGATAGTATCCTATAGGCCAAATTAACATAGTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348867 43 +    434444 TAACCTCATGGGATAGTATCATATAGGTCAAATTAACATAATT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396189 43 -    438202 TAACCTCATGGGATAGTATCATATAGGTCAAATTAACATAATT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445937 43 +  90373283 TAACCTCATGGGATAGTATCATATAGGTCAAATTAACATAATT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496385 43 -   1547936 TAACCTCATGGGATAGTATCATATAGGTCAAATTAACATAATT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11539 43 +    168452 TAAATTCATGGGATAGTACCATATAGGCCAAATTAACATAGTT
i colAng1.NW_012121088v1       C 0 C 0
s cebCap1.NW_016107851v1         1053459 43 +   1314817 TAACCTCACAGGATAGTATTATATAGGCCAAATTAACATTATT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647197 33 -  27850971 -TACTTCGTAGGATAGTATCATATACACCAAAAT---------
i otoGar3.GL873538             C 0 I 9
s canFam3.chr2                  79097500 43 -  85426708 GTACTTCATAAGTTAGTATCATTTAGTGCAAAAAAAGAGAATT
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1720489 33 -   2296528 TTACTTCATAGGCTAGTATCATAAAAGCCAAAA----------
i dasNov3.JH570393             C 0 C 0
e papAnu3.chr13                 40403487 43 - 128036923 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e saiBol1.JH378105              64635965  5 -  72162052 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=24868.000000
s hg38.chr14_GL000009v2_random     20184 5 +    201709 GAAAA
s panTro5.chr9                  41696172 5 + 116767853 GAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96040597 5 - 114479721 GAAAA
i panPan2.chr13                C 0 C 0
s nomLeu3.chr1a                 40814195 5 + 122973662 GAAAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111079010 5 - 111193037 CAAAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348910 5 +    434444 GAAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396232 5 -    438202 GAAAA
i cerAty1.NW_012002921v1       C 0 C 0
s papAnu3.chr13                 40403530 5 - 128036923 CAAAA
i papAnu3.chr13                I 43 I 42
s chlSab2.chr2                  66445980 5 +  90373283 GAAAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496428 5 -   1547936 GAAAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11582 5 +    168452 GAAAA
i colAng1.NW_012121088v1       C 0 C 0
s cebCap1.NW_016107851v1         1053502 5 +   1314817 GAAGA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647239 4 -  27850971 GAAA-
i otoGar3.GL873538             I 9 C 0
s canFam3.chr2                  79097544 4 -  85426708 GAAG-
i canFam3.chr2                 I 1 I 3
s dasNov3.JH570393               1720522 5 -   2296528 GAAGA
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e saiBol1.JH378105              64635965 5 -  72162052 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I
e gorGor5.CYUI01015896v1           77219 0 -    416926 C

a score=205311.000000
s hg38.chr14_GL000009v2_random     20189 42 +    201709 GAATAGTGTTGGGTGATTTATTGGGA------------------------AGAAATTAATTAGAGA----------------------------------
s panTro5.chr9                  41696177 42 + 116767853 GAATAGTTTTGGGTGATTTATGGAGA------------------------ATAAATTAATTAAAGA----------------------------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96040602 42 - 114479721 GAATAGTTTTGGGTGATTTATGGAGA------------------------ATAAATTAATTAAAGA----------------------------------
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           77219 42 -    416926 GAATAGTGTTGGGTGATGTATGGAGA------------------------AGAAATTAATTCGAGA----------------------------------
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814200 42 + 122973662 GAATAGTGTTGGGTGATTTGTGGAGA------------------------AGAAATTAATTAGAGA----------------------------------
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111079015 41 - 111193037 GAATAGTGTT-GGTGATTTATGGAGA------------------------AGACATTAAGTAGAGA----------------------------------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348915 42 +    434444 GAAGAGTGTTGGGTGATTTATGGAGA------------------------AGAAATTAATTAGAGA----------------------------------
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396237 42 -    438202 GAAGAGTGTTGGGTGATTTATGGAGA------------------------AGAAATTAATTAGAGA----------------------------------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66445985 42 +  90373283 GAATAGTATTGGGTGATTTATGGAGA------------------------AGAAATTAATTAGAGA----------------------------------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496433 42 -   1547936 GAAGAGTGTTGGGTGATTTATGGAGA------------------------AGAAATTAATTAGAGA----------------------------------
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11587 42 +    168452 GAATAGTGTTGGGTGATTTTTGGAGA------------------------AGAAATTAAGTAGAGA----------------------------------
i colAng1.NW_012121088v1       C 0 C 0
s cebCap1.NW_016107851v1         1053507 42 +   1314817 AAATAGTGTTGGGTGATTTATGGAGA------------------------AGAAGTTAATCAGAGA----------------------------------
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647243 35 -  27850971 GTAGAAAGTAGGGTTAGTGGTGGAGA-------------------------------GATCAGGGA----------------------------------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79097551 35 -  85426708 AAAGAGAGCAGGGTCAATTAGGGGGA-------------------------------GATCAAGGA----------------------------------
i canFam3.chr2                 I 3 C 0
s dasNov3.JH570393               1720527 95 -   2296528 -----GAGCAGGGTCAGTTATGTAGAGATCAAGGAAGCTAAAGCCTAACAAAAAGTCCATTAGGaaaaaaaacaaaaaaagaaaaataaagaataaaaga
i dasNov3.JH570393             C 0 C 0
e papAnu3.chr13                 40403535 42 - 128036923 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e saiBol1.JH378105              64635965  5 -  72162052 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=2574.000000
s hg38.chr14_GL000009v2_random     20231 1 +    201709 A
s panTro5.chr9                  41696219 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96040644 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           77261 1 -    416926 A
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814242 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111079056 1 - 111193037 T
i macFas5.chr13                C 0 I 1
s macNem1.NW_012012823v1          348957 1 +    434444 A
i macNem1.NW_012012823v1       C 0 I 1
s cerAty1.NW_012002921v1          396279 1 -    438202 A
i cerAty1.NW_012002921v1       C 0 I 1
s papAnu3.chr13                 40403577 1 - 128036923 T
i papAnu3.chr13                I 42 I 99
s chlSab2.chr2                  66446027 1 +  90373283 A
i chlSab2.chr2                 C 0 I 1
s manLeu1.NW_012105442v1         1496475 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 I 1
s colAng1.NW_012121088v1           11629 1 +    168452 T
i colAng1.NW_012121088v1       C 0 I 1
s cebCap1.NW_016107851v1         1053549 1 +   1314817 A
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647278 1 -  27850971 A
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79097586 1 -  85426708 A
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1720622 1 -   2296528 a
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e saiBol1.JH378105              64635965 5 -  72162052 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=75958.000000
s hg38.chr14_GL000009v2_random     20232 16 +    201709 GCT-TTG--CCTGATTAAA--
s panTro5.chr9                  41696220 17 + 116767853 AGTATTG--CCTGATTAAA--
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96040645 17 - 114479721 AGTATTG--CCTGATTAAA--
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           77262 17 -    416926 GTTATTG--CCTGATTAAA--
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814243 17 + 122973662 GGCATCG--CCTAACTAAA--
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111079058 16 - 111193037 -GTATTG--CCTGATTAAA--
i macFas5.chr13                I 1 C 0
s macNem1.NW_012012823v1          348959 16 +    434444 -GTATTG--CCTGTTTAAA--
i macNem1.NW_012012823v1       I 1 C 0
s cerAty1.NW_012002921v1          396281 16 -    438202 -GTATTG--CCTGATTAAA--
i cerAty1.NW_012002921v1       I 1 C 0
s chlSab2.chr2                  66446029 16 +  90373283 -GTATTG--CCTGATTAAA--
i chlSab2.chr2                 I 1 C 0
s manLeu1.NW_012105442v1         1496477 16 -   1547936 -GTATTG--CCTGATTAAA--
i manLeu1.NW_012105442v1       I 1 C 0
s colAng1.NW_012121088v1           11631 16 +    168452 -GTATTG--CCTGATTAAA--
i colAng1.NW_012121088v1       I 1 C 0
s cebCap1.NW_016107851v1         1053550 17 +   1314817 GGTATAG--CCTGATTAAA--
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647279 17 -  27850971 GCTATTG--CTTGATAAAA--
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79097587 18 -  85426708 -GCTTTAGCCCTGATAAAA--
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1720623  9 -   2296528 ------------aaTTTAAAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chr13                 40403578 99 - 128036923 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e saiBol1.JH378105              64635965  5 -  72162052 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=568303.000000
s hg38.chr14_GL000009v2_random     20248 80 +    201709 AGTTCATTAGAAACATTATGGCTTATAACGTAGTATT-AAATTCAGGG--------ACATAATAGGAAAGAAGTTGAGGCTAGGCCAAA
s panTro5.chr9                  41696237 80 + 116767853 AGTTCATTAGAAACATTATGGCTTATAATGTAGTATT-AAATTCAGGT--------ACATAATAGGGAAGAAATTGAGGCTAGGCCAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96040662 80 - 114479721 AGTTCATTAGAAACATTATGGCTTATAATGTAGTATT-AAATTCAGGT--------ACATAATAGGGAAGAAATTGAGGCTAGGCCAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           77279 80 -    416926 AGTTCATTAGAAACATTATGGCTTATAATGTAGTATT-AAATTGAGGG--------ACATAATAGGGAAGAAATTGAGGCTAGGCCAAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814260 75 + 122973662 AGTTCATTAGAAACATTATGGCTTA-----TAGTATT-AAATTCAGAG--------AAATGATAGGGAAGAAATTGAGGCTAGGCCAAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111079074 80 - 111193037 AGTTCATTAGAAACATTATGGCTTATAATGTAGTATT-AAATTCAGGG--------ACATAGTAGGGAAGAAATTGACGCTAGGCCAAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          348975 80 +    434444 AGTTCATTAGGAACACTATGGCTTATAATGTAGTATT-AAATTCAGGG--------ACATAATAGGGAAGAAATTGAGGCTAGGCCAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396297 80 -    438202 AGTTCATTAGGAACACTATGGCTTATAATGTAGTATT-AAATTCAGGG--------ACATAATAGGGAAGAAATTGAGGCTAGGCCAAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66446045 80 +  90373283 AGTTCATTAGGAACACTATGGCTTATAATGTAGTATT-AAATTCAGGG--------ACATAATAGGGAAGAAATTGAGGCTAGGCCAAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496493 80 -   1547936 AGTTCATTAGGAACACTATGGCTTATAATGTAGTATT-AAATTCAGGG--------ACATAATAGGGAAGAAATTGAGGCTAGGCCAAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11647 80 +    168452 AGTTCATTAGAAACATTATGGCTTAGAATGTAGTATT-AAATTCAGGG--------ACATAGTAGGGAAGAAATTGACGCTAGGCCAAA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64635970 80 -  72162052 AGTTCATGAGCAACATTATGGCTTATAATGTAGTATT-GCATTCAGGA--------ACATGATAGGAAAGGAATAGAGGCGAGGCTCCC
i saiBol1.JH378105             I 5 I 1
s cebCap1.NW_016107851v1         1053567 79 +   1314817 AGTTCATTAGCAATATTATGGCTTATAATGTAGTATT-A-ATTCAGGA--------ACATGATAGGAAGGGAATTGAGGCTAGGCTCCA
i cebCap1.NW_016107851v1       C 0 I 1
s otoGar3.GL873538              19647296 87 -  27850971 AGTCCATTAGAAACGTTATAATCTGTAATGCAGT-TT-GAATTGGTGGGGGGGAGTGTGTGGTAGGGATGAACTTGAGACTAGATTCCA
i otoGar3.GL873538             C 0 I 1
s canFam3.chr2                  79097605 80 -  85426708 AGTCCATTAGAACATTTGTGACTTTTAATACATTTTC-AGTTTTGGAG--------AATTGTTAGTGACGAACTTGAGGCTTGATATTT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1720632 77 -   2296528 AGTTCATTAGAAACTTTATGACTTTTAATCCAGTTTTCAGTTTTGGAG--------AAGTGATAGGGGGGAATTTAGTTTCTGAA----
i dasNov3.JH570393             C 0 C 0
e papAnu3.chr13                 40403578 99 - 128036923 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=2174.000000
s hg38.chr14_GL000009v2_random     20328 1 +    201709 A
s panTro5.chr9                  41696317 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96040742 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           77359 1 -    416926 A
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814335 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111079154 1 - 111193037 C
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          349055 1 +    434444 A
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396377 1 -    438202 A
i cerAty1.NW_012002921v1       C 0 C 0
s papAnu3.chr13                 40403677 1 - 128036923 C
i papAnu3.chr13                I 99 I 909
s chlSab2.chr2                  66446125 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496573 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11727 1 +    168452 C
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64636051 1 -  72162052 A
i saiBol1.JH378105             I 1 C 0
s cebCap1.NW_016107851v1         1053647 1 +   1314817 A
i cebCap1.NW_016107851v1       I 1 C 0
s otoGar3.GL873538              19647384 1 -  27850971 A
i otoGar3.GL873538             I 1 C 0
s canFam3.chr2                  79097685 1 -  85426708 G
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1720709 1 -   2296528 A
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=2642923.000000
s hg38.chr14_GL000009v2_random     20329 391 +    201709 AGGCCAA--TTAGGGTAAACCAATATGGAAGCACA-CCAGTGTAGAACAAGGCAT-T-CAAATTGTCATGAATACGTtgaggagcttctggaaagtgcacattctgactcagcaggtattggagtctgcatttctcatgagcactcaggtgatgtttgtg---c---tg---gtccttggacacagctctgaatagcaaggGAATAGCCTTC-CTT-TAGAGAAATCTGGAAAAAGAACCAC---------TGGAGAGCAATTT-AAAAGATAACAGAATCCAGGGAAAGCTTTAATTTCCTTTTATTTCTGAGCATGATTCTAGCCACAGGG---GAAGGAA-AATGAGATGAAAAA-AGAGAGATTACAGGTGT---ATACTACTGCTGAATACAGATG-AAAAAAGTGGTCACAATCATCCAT
s panTro5.chr9                  41696318 391 + 116767853 AGGCCAA--TGAGGGTAAACCAATATGGAAGCACA-TCAGTGTAGAACAGGGCAT-T-CAAATTGTCatgaattcgttgaggagcttctggaaagtgcacattctgactcagcaggtatgggagtctgcatttatcatgagcactcaggtgatgttggtg---c---tg---gtccttggacacagctctgaatagcagggGAATAGCCTTC-CTT-TAGAGACATCTGGAAAAAGAACCAC---------TGGAGAGCAATTT-AAAAAATAACAGAATCCAGTGAAAGCTTTAATTTCCTTTTATTTCTGAGCATGATTCTAGCCACAGGG---GAAGGAA-AATGAGATGAAAAG-AGAGAGATTACAAGTGC---ATACTACTGCTGAATGCAGATG-AAAAAAGTGGTAACAATTATCCAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96040743 391 - 114479721 AGGCCAA--TGAGGGTAAACCAATATGGAAGCACA-TCAGTGTAGAACAGGGCAT-T-CAAATTGTCatgaattcgttgaggagcttctggaaagtgcacattctgactcagcaggtatgggagtctgcatttatcatgagcactcaggtgatgttggtg---c---tg---gtccttggacacagctctgaatagcagggGAATAGCCTTC-CTT-TAGAGACATCTGGAAGAAGAACCAC---------TGGAGAGCAATTT-AAAAAATAACAGAATCCAGTGAAAGCTTTAATTTCCTTTTATTTCTGAGCATGATTCTAGCCACAGGG---GAAGGAA-AATGAGATGAAAAA-AGAGAGATTACAAGTGC---ATACCACTGCTGAATGCAGATG-AAAAAAGTGGTAACAATTATCCAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           77360 390 -    416926 GGG-CAA--TTAGGGTAAACCAATATGGAAGCACA-TCAGTGTAGAACAGGGCAT-T-CAAATTGTCatgaatgagttgaggagcttctggaaggtgcacattctgattcagcaggtatgggagtctgcatttctcatgagtactcaggtgattttggtg---c---tg---gtccttggacacagctctgaatagcaaggGAATAGCCTTC-CTT-TAGAGAACTCTGGAAAAAGAACCAT---------TGGAGAGCAATTT-AAAAAATAACAGAATCCAGGGAAAGCATTAATTTCCTTTTATTTCTGAGCATGATTCTAGCCACAGGG---GAAGGAG-AATGAGATGAAAAC-AGAGAGATTACAGGTGT---ATACTACTGCTGAATACAGATG-AAAAAAGTGGTCACAATTATCCAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814336 377 + 122973662 AGGGCAA--TTAGGGTAAACCAATATGGAAGCACA-TCAGTGTAGAACAGGGCAT-T-CAAATTTTCATGAAGTAGTTGAGGAACTTCTGGAAAATGCACATTctgatc------------gattctgcatttctcatgagtactcaggtgatgttggta---c---tg---gtccttgggcatagctctgaatagcaaggAAATAGTCTTC-CTT-TAGAGAAATCTGGAAAAAGAACTAT---------TGGACAACAATTT-AAAAAATAACAGAATCAAGGGAAAGCATTAATTTCCTTTTATTTCTGAGCATGATTCTAGCCAC--GG---GAAGGAG-AATGAGATGAAAAC-AGAGAGATTACAGGTAT---ATACTACTGCTGAATACAGATG-AAAAAAGTGGTCACAATTATCCAC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111079155 388 - 111193037 AGGGCAA--TTAGGGTAAACCAATATGCAAGCACA-TCAGTGTAGAAAAGGGCAT-T-CAAATTGTCATGAATTTGTTGAGAAGCTTCTGGaaagtgcacattctgattcagcaggtatgggattctgcatttctcatgagtactcaggtgatgttggtg---c---tg---gtccctggacatagccctgaataacaaggGAATAGCCTTC-CTT-TAGAGAAATCTGGAAAAAGAACTAT---------TGGAGAGCAATTT-AAAAAATAACAGAATCCAGGGAAAGCATTGA-TTCCTTTTATTTCTGAGCATGATTCTAGCCACaggg---gaaggag-aatgagatgaga---agagagaaTACAGGTGT---ATACTACTCCTGAACACAGATG-ACAACAGTGGTCACAATGATCGAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          349056 377 +    434444 AGGGCAA--CTAGGGTAAACAAATATGGAAGCATA-TCAGTGTAGAACAGGGCAT-T-CAAATTCTCatgaattagttgaggagcttctgcaaaatgcacattctgatc------------gattctgcctttctcatgaatactcaagtgatgttggtg---c---tg---gtccttggacatagctctgaatagcaaggCAATAGCCTTC-CTT-TAGCGAAATCTGGAAAAAGAACCAT---------TGGACAGCAATTT-TAAAAATAGCAGAATCAAGGGAAAGCATTAATTTCCTTTTATTTCTGAGTGTGATTCTAGCCATAGGG---GAAGGAG-AATGAGATGAGA---AGAGAGATTACAGGTGT---ATACTATTGCTGAATACAGATG-TAAACAGTGGTCACAATTATCCAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396378 377 -    438202 AGGACAA--CTAGGGTAAACAAATATGGAAGCATA-TCAGTGTAGAACAGGGCAT-T-CAAATTCTCatgaattagttgaggagcttctgcaaaatgcacattctgatc------------gattctgcctttctcatgaatactcaggtgatgttggtg---c---tg---gtccttggatatagctctgaatagcaaggGAATAGCCTTC-CTT-TAGCGAAATCTGGAAAAAGAACCAT---------TGAACAGCAATTT-TAAAAATAGCAGAATCAAGGGAAAGCATTAATTTCCTTTTATTTCTGAGCGTGATTCTAGCCATAGGG---GAAGGAG-AATGAGATGAAA---AGAGAGATTACAGGTGT---ATACTATTGCTGAATACAGATG-TAAACAGTGGTCACAATTATCCAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66446126 377 +  90373283 AGGGCAA--CTAGGGTAAACAAATATGGAAGCATA-TCAGTGTAGAACAGGGCAT-T-CAAATTCTCATGAATTAGTTGAGGAGCTTCTGCAAAATGCACATTCTGATC------------gattctgcctttctcatgaatacttaggtgatgttggtg---c---tg---gtccttggacatagctctgaatagcaaggGAATAGCCTTC-CTT-TAGAGAAATCCGGAAAAAGAACCAT---------TGGATAGCAATTT-TAAAAATAACAGAATCAAGGGAAAGCATTGATTTCCTTTTATTTCTGAGCATGATTCTAGCCACAGGG---GAAGGAG-AATGAGATGAAA---AGAGAGATTACAGGTGT---ATACTATTGCTGAATACAGATG-AAAACAGTGGTCACAATTATCCAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496574 377 -   1547936 AGGGCAA--CTAGGGTAAACAAATATGGAAGCGTA-TCAGTGTAGAACAGGGCAT-T-CAAATTCTCatgaattagttgaggagcttctgcaaaatgcacattctgatc------------gattctgcctttctcatgaatactcaggtgatgttggtg---c---tg---gtccttggacatagctctgaatagcaaggGAATAGCCTTC-CTT-TAGCGAAATCTGGAAAAAGAACCAT---------TGGACAGCAATTT-TTAAAACAGCAGAATCAAGGGAAAGCATTAATTTCCTTTTATTTCTGAGCGTGATTCTAGCCATAGGG---GAAGGAG-AATGAGATGAAA---AGAGAGATTACAGGTGT---ATACTATTGCTGAATACAGATG-TAAACAGTGGTCACAATTATCCAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           11728 388 +    168452 AGGGCAA--TTAGGGTAAACCAATATGCAAGCACA-TCAGTGTAGAACAGGGCAT-T-CAAATTGTCatgaattagttgaggagcttctggaaagtgcacattctgattcagcaggtatgggattctgcatttctcatgagtactcaggtgatgctggtg---c---tg---gtccttggacacagccctgaatagcaaggGAATAGCCTTC-CTT-TAGAG-AATCTGGAAAAAGAACCAT---------TGGAAAGCAATTT-AAAAAACAACAGAATCCAAGGAAAGCATTAATTTCCTTTTATTTCTGAGCAGGATTCTAGTCACAGGG---AAATGAG-AATGAGATGAAA---AGAGAGATTACAGACGT---ACACTACTGCTGAACACAGATG-ACAACGGTGGTCGCAATGATCCAT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64636052 389 -  72162052 AGGGCAC--TTAGGGTAAACAAATATGGAAGCACG-TCTTTGGAGAACAGGGCAT-T-TCAATACTCGTgaattggttgaggagcttctggaaaatgcacattctgaatcagcgagtatgggattctgcatttctcttgagtactcgggtgatgttgatg---c---tg---gtccttggacacagctctgaatagcaCAGG---AGCC-TC-CTT-TAGAGAAATCTGGAAAAAGAACCAT---------TAGGCAGCAATTTAAAAAAATAACAGAATCAAGGGAAAACATTAATTTCCTTTTATTTCTGAGCATGATTCTAACCACAGGG---GAGGGAG-AATGAGATGAAAAAGAAAGAGAA-ATATGTGT---GTACTACTGCTGAATACAGATGAAAAAAAGTGGTTGCAATTATCCAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1053648 389 +   1314817 AGGGCAC--TTAGGGTAAACAAATATGGAAGCACT-TCTTTGTAGAACAGAGCAT-T-TCAATACTCatgaattggttgagaagcttctggaaaatgcacattttgaatcaacaggtattggattctgcagttctcatgagtactcaggtgatgttgatg---c---tg---gtccttggacacagctctgaatagcaaggGAATAGCC-TC-CTT-TAGAGAAATCTGGAAAAAGAACCAT---------TAGGCAGCAATTT-AAAAAATAACAGAATCAAGGGAAAACATTAATTTCCTTTTATTTCTGAGCATGATTCTAGCCACAGGG---GAGGGAG-AATCAGATGAAAA--AAAGAAAA-ATATGTGT---GTACTACTGCTGAACACAGATGAAAAAAAGTGGTTGCAATTATCCAT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647385 387 -  27850971 AGGCTAAGTTCAGGCTAA------GTGGGAGCATATTCAGTATAGACcagagcttct-caaatgttaaggtatcagctggggaccttgttaaaaatacacattgtgattcagcaggcatgggatgctgtatatctagtatgtttttaggtgatgctgatgatat---tg---gtccttggac--catcctgagtag------GATGACTTCT-GTA-TGGAGACATCTGGAAGAATCACCAT---------TGGATAACAGTTC--AAACATAGCAGGACCAAGGGAAAGCATTATTTTGCTTTTATTTCTGAGCATGTTTCTAGCCAGAGTA---GAAGGAGCAAAGAGATGAAGAA-ATCAAAATTATAGATATAAGATATTATTGCTAAATAAAGAGG-ACAGGGTTGGTGGGACCAATTTAT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79097687 359 -  85426708 AGG------TTAAGGTAAAGGAATGCGGCAGCAGATTCAGTGTGGACCAGAATTT-TGCAAATTGTAGTgaatcacctgag-accttgttaaaaatgcacaccatgaac-agcaggtctggaattctgtgttt----tgacctctcagatgatgccagtg---tcggtg---gtccttgggtcatgtgctcagtagcatggAAGTAGACTTC-CCTGTAGAGAAATCTGGAAAG---GCTCT---------TGGA---TATTTC-AAGACATAACAGGATCAAGGAAAAGCATTATTTTCTTTTTATTTCTCAACATG-------------GA---GATACAG-AA-------------ATAGAAGGTATAAATGCAAGGTATTATTGCTAAACAAAGAGG-AAAGAAGTGGTGGAGAATATCCAT
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1720710 363 -   2296528 GGGTAAG--TCAAGATAAAGAAATGTGGAAACAGACTCAGTATAGACCAGAGCAT-T----------------------------TTGTAGCAGGTg------------------gtccgagagtctgc--ctctaacaagctcccaggtgatgccgatg---c---tgctaatcatggtactacactttgagcaggaaggGTATAGATTTCTCCT-TTTAAAAATCTGGAGGAAGAGCTGTTCTTCCAGATGGATAATAGTTA-AAAATACAACAGGATCAAACAAAGCCATTATTTTGCATTTGTTTCTGAGCATGTTTATAGGCAGAGGGTCTGAAGCAA-AA-AAGATGAAGAA-ATCGAATTTATAGATGCAAGATTCTGCTGCTAAACAAAGAGA-AAAGAAGTGGTAGGAATAATCCAT
i dasNov3.JH570393             C 0 I 416
e papAnu3.chr13                 40403678 909 - 128036923 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=374081.000000
s hg38.chr14_GL000009v2_random     20720  64 +    201709 AAAAAG-CAGTTAG--GAAGGGAAGCA-TCAGGATGACAGTTCTGATAATCATTTTTT--------------------------------------------------CAAAGGAAGA
s panTro5.chr9                  41696709  64 + 116767853 TAAAAG-CAGTTAG--GAAGGGAAGCA-TTAGAAAGACAGCTCTAAAAATCACTTTTT--------------------------------------------------CAAAGGAAGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96041134  64 - 114479721 AAAAAG-CAGTTAG--GAAGGGAAGCA-TTAGAAAGACAGCTCTAAAAATCACTTTTT--------------------------------------------------CAAAGGAAGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           77750  64 -    416926 AAAAAG-CAGTTAG--GAAGGGAAGCA-TCAGGATGACAGTTCTAAAAATCACTTTTT--------------------------------------------------CAAAGGAAGA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814713  64 + 122973662 AAAAAG-CAGTTAG--GAAGGGAAGCA-TCAGGACAACAGATCTAAAGATTACTTTTT--------------------------------------------------CAAAGGAAGA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111079543  64 - 111193037 AAAAAG-CAGCTAG--GAAGGGAAGCA-TCAGGATGACAGATCTAAAAATCACTTTTT--------------------------------------------------CAAAGGAAGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          349433  58 +    434444 AAAAAG-CAGTTAG--GAAGGGAAGC-------ACGACAGATCTAAAAATCACTTTTT--------------------------------------------------CAAAGGAAGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396755  58 -    438202 AAAAAG-CAGTTAG--GAAGGGAAGC-------ACGACAGATCTAAAAATCACTTTTT--------------------------------------------------CAAAGGAAGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66446503  58 +  90373283 AAAAAG-CAGTTAG--GAAGGGAAGC-------ACGACAGATCTAAAAATCACTTTTT--------------------------------------------------CAAAGGAAGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1496951  58 -   1547936 AAAAAG-CAGTTAG--GAAGGGAAGC-------ACGACAGATCTAAAAATCACTTTTT--------------------------------------------------CAAAGGAAGA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           12116  64 +    168452 AAAAAG-CAGCTAG--GAAGGGAAGCA-TCAGATTGACAGATCTAAAAATCACTTTTT--------------------------------------------------CAAAGGAAGA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64636441  64 -  72162052 AAAAAG-CAGTTAG--GAAGGGAAGCA-TCAGGATGACAGATCTAAAGATTCCTTTTG--------------------------------------------------CAAAGGAAGA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1054037  64 +   1314817 AAAAAG-CAGTTAG--GAAGGGAAGCA-TCAGGATGACAGATCTAAAGATTCCTTTTG--------------------------------------------------CAAAGGAAGA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647772  61 -  27850971 TTGAAG-AGTGTAG--AA---GAAGAA-TCAAGACCACAGACACTAAGATTAATTTTG--------------------------------------------------CAGAGGAAGA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79098046 114 -  85426708 AAAAAGATAGTAAA--AGCAAAAAGAA-TCAAGACCATAGA-CCAGAAATTACCTTTTAAaaagatttatttatttatgttagagagagtcaatgagcagggagggggcaaagggaga
i canFam3.chr2                 C 0 I 169
s dasNov3.JH570393               1721489  60 -   2296528 aaaAAG-AAGACTGCAGAAGAGGAGTACTCAAGAACACAGAT-TAGAGATTACTTTTG--------------------------------------------------AAGA------
i dasNov3.JH570393             I 416 C 0
e papAnu3.chr13                 40403678 909 - 128036923 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1603914.000000
s hg38.chr14_GL000009v2_random     20784 231 +    201709 GGGATGGTGAAAGGACACAAAAGGAGGAAAGAAAG--ACATTTGCT-GGGGTCTTG-GGAGTTAAAGCCAAGTTAACTTGA--GACAACTCACTTCCAGTTGCTTCAGCATATGCCCAGTCTCACAAAAGAGG-----TTATTGCTG-----TGGAGAGTACTGGAGACAGGAGGGAGTGCTAGAGTTGGGGTAAACCACAGCAGC---TCATTT---CACTT---GATAACTGTCAGGCCTCAGGGAGAG-AAGTT
s panTro5.chr9                  41696773 231 + 116767853 GGAATTGTGAAAGGACACAGAAGGAGGAAAGAAAG--ACATTTGCT-GGGGTCTTG-GAAGTTAAAGCCAAGTAAACTTGA--GACAACTCACTTCCAGTTGCTTCAGCATATGCCCAGTCTCACAAAAGAGG-----TTATTGCTG-----TGGAGAGTACTGGAAGCAGGAGGGAGTGCTAGAGTTGGGGTCAACCACAGCAGC---TCATTT---CACTT---GATAACTGTCAGGCCTCAGAGAGAG-AAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96041198 229 - 114479721 GGAATTGTGAAAGGACACAGAAGGAGGAAAGAAAG--ACACTTGCT-GGGGTCTTG-GAAGTTAAAGCCAAGTAAACTTGA--GACAACTCACTTCCAGTTGCTTCAGCATATGCCCAGTCTCACAAAAGAGG-----TTATTGCTG-----TGGAGAGTACTGGAAGCAGGAGGGAGTGCTAGAGTTGGGGTCAACCACAGCAGC---TCATTT---CACTT---GATAACTGTCAGGCCTCA--GAGAG-AAATT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           77814 230 -    416926 GGGATTGTGAAAGGACACGGAGGGAGGAAAGAAAG--ACATTTGCT-GGGGTC-TG-GGAGTTGAAGCCAAGTAAACTTGA--GACAACTCACTTCCAGTTGCTTCAGCATATGCCCAGTCTCACAAAAGAGG-----TTATTGCTG-----TGGAGAGTACTGGAGGCAGGAGGGAGTGCTAGAGTTGGGGTAAACCACAGCAGC---TCATTT---CACTT---GATAACTGTCAGGCCTCAGAGAGAG-AAGTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40814777 232 + 122973662 GGGATTGTGAAAGGACAAGGAGGGAGGAAAGAAAG--AAATTTGCTGGGGGTCTTG-GGAGTTAAAGCCAAGTAAACTTGA--GACAACTCACTTCCAGTTGCTTCAGCATATGCCCAGTCTCACAAAAGAGG-----TTATTCCTG-----TGGAGGGTACTGGAGGCAGGAGGGAGTGCTAGAATTGGGGTAAACCACAGCAGC---TCATTT---CACTT---CGTAATTGTCAGGCCCCAGAGAAAG-AAGTT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111079607 230 - 111193037 GGGATTGTGAAAGGACAAGGAGGGAGGAAAGAAAG--ATATTTGCT-TGGTTCTTG-GGAGTTAAAGCCAAGTAAACTTGA--GATGAGTCACTTCCAGTTGCTTTGGCGTATGGCCAGTCTCACAAGAGAGG-----TTATTGCTG-----TGGAGAGTACTGGAGGCAGGAGGGAGTGCTAGACTTGGGGTAAACTCCA-CAGC---TCATTT---CACTT---CATAACTGTCAGGCCTCAGAGAGAG-AAGTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          349491 231 +    434444 GGGATTGTGAAAGGACAAGGAGGGAGGAAAGAAAG--ACATTTGCT-GGGGTCTTG-GGAGTTAAAGCTAAGTAAACTTGA--GACAACTCACTTCCAGTTGCTTCAGCATATACCCAGTCTCACAAAAGAGG-----TTATTGCTG-----TGGGGAGTACTGGAGGCAGGAGGGAGTGCTAGAATTCGGATAAACCACAGCAGC---TCATCT---CACTT---CATAACTGTCAGGTCTCAGAGAGAG-ACGTC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          396813 231 -    438202 GGGATTGTGAAAGGACAAGGAGGGAGGAAAGAAAG--ACATTTGCT-GGGGTCTTG-GGAGTTAAAGCTAAGTAAACTTGA--GACAACTCACTTCCAATTGCTTCAGCATATACCCAGTCTCACAAAAGAGG-----TTATTGCCA-----TGGGGAGTACTGGAGGCAGGAGGGAGTGCTAGAATTGGGGTAAACCACAGCAGC---TCATCT---CACTT---CATAACTGTCAGGTCTCAGAGAGAG-ACGTC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66446561 231 +  90373283 GGGATTGTGAAAGGACAAGGAGGGAGGAAAGAAAG--ACATTTGCT-GGGGTCTTG-GGAGTTAAAGCTAAGTAAACTTGA--GACAACTCACTTCCAGTTGCTTCAGCATATACCCAGTCTCACAAAAGAGG-----TTATTGCCG-----TGGGGAGTATTGGAGGCAGGAGGGAGTGCTAGAATTGGGGTAAACCACAGCAGC---TCATCT---CACTT---CATAACTGTCAGGTCTCAGAGAGAG-AAGTC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1497009 231 -   1547936 GGGATTGTGAAAGGACAAGGAGGGAGGAAAGAAAG--ACATTTGCT-GGGGTCTTG-GGAGTTAAAGCTAAGTAAACTTGA--GACAACTCACTTCCAGTTGCTTCAGCATATACCCAGTCTCACAAAAGAGG-----TTATTGCCG-----TGGGGAGTACTGGAGGCAGGAGGGAGTGCTGGAATTGGGGTAAACCACAGCAGC---TCATCT---CACTT---CGTAACTGTCAGGTCTCAGAGAGAG-ACGTC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           12180 231 +    168452 GGGATTGTGAAAGGACAAGGAGGGAGGAAAGAAAG--ACATTTGCT-GGGTTCTTG-GGAGTTAAAGCCAAGTAAACTTGA--GATGAGTCACTTCCAGCTGCTTTGGCGTATGGCCAGTCTCACAAGAGAGG-----TTATTGCTG-----TGGAGAGTACTGGAGGCAGGAGGGAGTGCCAGACTTGGGGTAAACTGCAGCAGC---TCATTT---CACTT---GATAACTGTCAGGCCTCAGAGAGAG-AAGTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64636505 228 -  72162052 GGGATTGTGAAAGGACAAGGAGAGAGGAAAAAAGG--AAGTTTGCT-GGGGACTTG-AGAGGTGAAGCCAAGGAAACATGA--GAC--CTCACTTCCAGGTGCTTCTAGATATGCCCAGTCTCAGAATAGAGG------TATTGCTG-----TGGAGAGTACTGGAGGCAGGAGGGAGTGCTAGAATGGGCGTAAAGCACAGCAGC---TCGTTT---CTCTT---CATAACTGTCAGGCCTCAGAAAGGG-AAATG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1054101 229 +   1314817 GGGATTGTGAAAGGACAAGGAGAGAGGAGAGAAAG--AAGTTTGCTGGGGGACTTG-AGAGGTGAAGCCAAGGAAACATGA--GAC--CTCACTTCCAGTTGCTTCTATATATGCCCAGTCTCACAATAGAGG------TATTGCTG-----TGGAGAGTACTGGAGGCAGGAGGGAGTGCTGGAATGGGCATAAACCACAGCAGC---TCATTT---CTCTT---CATAACTGTCAGGCCTCGGAGAGGG-AAATT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19647833 235 -  27850971 AAGATTGTGAATGAGGAAGGAGGGAGGAAAGAAGG--AAGTCAGCT-AGGTAATTATGTAGTTAATGATGAGAAAACTTGAATGAGAATTCACTTCAGGTGGCTTCA--ATATACTTATACTCACACGGAACA-----TGAGAGATG-----CTCAGAG-ATTAGTAACAGGGGGAAATGCTAGAATTGGGGTAAACCACAGTAGC---ACATTTCTGCTCTC---CATTACTGTCAGGTATCAAAGATAgtaagtt
i otoGar3.GL873538             C 0 I 118
s canFam3.chr2                  79098329 233 -  85426708 GGGATAGTGAAGGGA-AAGAGAGGAAAAAAGAAAGTTATGTTAGTTAGGGAGTTTT-GAAGTT---GGTGAGGAAACTCTA--GAGCATTCATTTTAGATAGCTTGAGTTTATTTGTACTGAAACAGGTTAGA-----TCACAGCTGCTCAACAAAGAATACTAAGAGCAAATGGA---GCTAGACTTGGGATAAAC-ATAGCCACCATTCATCT---TTCT----CAAATCTACTGGATCTCAAAGATAT-ATGTT
i canFam3.chr2                 I 169 C 0
s dasNov3.JH570393               1721549 223 -   2296528 ------GCAGAAGGG-AAGTAGGGAGAGGAAAAGC--A-----GCTAGGTAATTTT-GGAGTTAA---TGAGGAAGCTTGA--GAGAACTCACTTTC-GTTGCTTTAGTATGTTTCCCTGTTAACAGAAGATTGATCTTTGGTGCTC-----CAGGGAATACTGAAAGCAGGAGGCAGTGCTGGAATTGG-GTAAACCGGAGCTCC---TCATTT---CTCTTCCCCATCTCTATTAGGCCTTGAGAACAT-GTGTT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chr13                 40403678 909 - 128036923 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1497273.000000
s hg38.chr14_GL000009v2_random     21015 220 +    201709 TCACTGACATG----A-------------------------------------------GTGAATAAGATATGATTAAGTTGCATATAGATGCTTTGGTGAA--ATTTTTTT-GAGACAGCCAGTTCTTCGATATGATAGCTGTTTT-ATAAAAGTC-------CTTTACAGTGTAA-GATAATATACCAAACTCAGTTAATTTTAGAAGTA-ATC------ATAAAATTCATTCCATGAAAACCAAAATTATCATTTTCAATAAATACTGC---ACTGATTTTGAAAT
s panTro5.chr9                  41697004 220 + 116767853 TCACTGACATA----A-------------------------------------------GTGAATAAGATGCGATTAAGTTGCATATAGATGCTTTGGCTAA--TTTTTTTT-GAGACAGCCAGTTCTTTGATACGATAACTGTTTT-ATAAAAGTC-------CTTTACAGTGTAA-GATAATATACCAAACTTAGTTAATTTTAGAAGCA-ATC------ATAAAATTCATTCTGTGAATACCAAAATTCTCATTTTCAATAAATACTGC---ACTGATTTTGAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96041427 220 - 114479721 TCACTGACATA----A-------------------------------------------GTGAATAAGATGCGATTAAGTTGCATATAGATGCTTTGGCTAA--TTTTTTTT-GAGACAGCCAGTTCTTTGATACGATAACTGTTTT-ATAAAAGTC-------CTTTACAGTGTAA-GATAATATACCAAACTTAGTTAATTTTAGAAGCA-ATC------ATAAAATTCATTCTGTGAATACCAAAATTCTCATTTTCAATAAATACTGC---ACTGATTTTGAATT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           78044 224 -    416926 TCACTGACATG----A-------------------------------------------GTGAATAAGATGTGATTAAGTTGCATATAGATGCTTTGGCTAA--TTTTTTTT-GAGACAGCCAGTTCTTTGATATGATAGCTGTTTT-ATAAAAGTC-------CTTTACAGTGTAA-GATAATACACCAAACTTAGTTAATTTTAGAAGCA-ATC-ATATTATAAAATTCATTCTGTGAATACCAAAATTCTCTTTTTCAATAAATACTGC---ACTGATTTTGAA-T
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40815009 220 + 122973662 TCATTGACATG----A-------------------------------------------GTGAATTAGATATAATTAAGTTGTATATAGATGCTTTGGCTAA--TTTTTTTT-GAGACAGCCAGTTCTTT-----GATAGCTGTTTT-ATAAAAGTC-------CTTTACAGTGTAA-GATGATATACTGAACTTAGCTAATTTTAGAAGCA-ATC-ATATTATAAAATTCATTCTGTAAATATGAAAATTGTCATTTTCAATGAATATTGC---ACTAATTTTGCAAT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111079837 226 - 111193037 TCACTGACATG----A-------------------------------------------GCGAATAAGATGTGATTAAGTTGCATATAGATGCTTTGGCTAA--TTTTTTTTTGAGACAGCTAGTTATTTGATATGACAGCTGTTTC-ATAAATGTC-------CTTTACACTGTAA-GATAATATACCAAACTTAGTTAATTTTAGATGCA-ATG-ATATTATAAAATTCATTCTGTGAATACCAAATTTCTCATTTTCAATAAATACTGC---ACTGATTTTGCAAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          349722 225 +    434444 TCATTGACATG----A-------------------------------------------GTGAATAAGATGTGATTAAGTTGCATATAGATACTTTGGCTAA--TTTTTTTTCGAAACAGTCAGTTCTTTGATATGATAGGTGTTTT-ATAAAAATC-------CTTTACAGTGTAA-GAT-ATATACCAAACTTAGCTAATTTTAGAAGCA-ATA-ATATTGTAAAATTCAGTCTGTGAATACCAAAATTGTCATTTTCAATAAATATTGC---ACTAATTTTGCAAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          397044 226 -    438202 TCATTGACATG----A-------------------------------------------GTGAATAAGATGTGATTAAGTTGCATATAGATACTTTGGCTAA--TTTTTTTTCGAAACAGTCAGTTCTTTGATATGATAGGTGTTTT-ATAAAAATC-------CTTTACAGTGTAG-GATGATATACCAAACTTAGCTAATTTTAGAAGCA-ATA-ATATTGTAAAATTCATTCTGTGAATACCAAAATTGTCATTTTCAATAAATATTAC---ACTAATTTTGCAAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66446792 226 +  90373283 TCATTGACATG----A-------------------------------------------GTGAATAAGATGTGATTAAGTTGCATATAAATGCTTTGGCTAA--TTTTTTTTTGAAACAGTCAGTTCTTTGATATGATAGGTGTTTT-ATAAAAGTC-------CTTTACAGTGTAA-GATGATATACCAAACTTAGCTAATTTTAGAAGCA-ATA-ATATTGTAAAATTCATTCTGTGAATACCAAAATTGTCATTTTCAATAAATATTGC---ACTAATTTTGCAAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1497240 226 -   1547936 TCATTGACATG----A-------------------------------------------GTGAATAAGATGTGATTAAGTTGCATATAGATACTTCGGCTAA--TTTTTTTTCGAAACAGTCAGTTCTTTGATATGATAGGTGTTTT-ATAAAAATC-------CTTTACAGTGTAA-GATGATATACCAAACTTAGCTAATTTTAGAAGCA-ATA-ATATTGTAAAATTCATTCTGTGAATACCAAAATTGTCATTTTCAATAAATATTAC---ACTAATTTTGTAGT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           12411 226 +    168452 TCACTGACATG----A-------------------------------------------GTGAATAAGATGTGATTAAGTTGCATGTAGATGCTTTGGCTAA--TTATTTTT-GAGACAGCCAGTTATTTGATATGATAGCTGTTTTCATAAATGTC-------CTTTACAGTGTAA-GATAATATACCAAACTTAGTTAATTTTAGATGCA-ATC-ATATTACAAAATTCATTCTGTGAATACCGAATTTCTCATTTTCAATAAATACTGC---ACTGATTTTGCAAT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64636733 227 -  72162052 GCATTGATATG----A-------------------------------------------GTGAATAAGATGCGATTGAGTTGCATACAGATGCTTCGGCTAATTTTTTTTTT-GAGACAGCAAGTTCTTTGATATGCTCGCTCTTTC-ATAAAACTT-------CTCTACAGAGCAA-GATAATATATCAAACTTATCTAATTTTAGAAGCA-ATC-ATATTATCAGGTTTATTCTGTGAATACCAAAATCATCATTTTCAAGAAATACTGC---ACTGATTTTGAAAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1054330 225 +   1314817 TCATTGACATG----A-------------------------------------------GCGAATAAGATGCAATTAAGTTGCATAGAGATGCTTTGGCTAA--TTTTTTTT-GAGACAGCAAGTTCTTTGATATGATCGCTGTTTC-ATAAAACTT-------CTCTATAGAGTAA-GATAATATATCACACTTAGCTAATTTTAGAAGAA-ATC-ATATTATCAAGTTTATTCTGTGAATACCAAAAGCATCATTTTCAATAAATACTGC---ACTGATTTTGAAAT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19648186 261 -  27850971 tcaatgtgagg----aggtggtcagctatagaggtTATGCTGTATGATGTTGTATTGATGTTAATCACTTGAGATTAATCTGAATATAGATGTATTGATTGG--TTTTT----AAGATTACTGATTTTTT-----AATAACTGTTTC-ATAAAAATC-------CATTCAAGACTAATGTTGATATAGAAAACCAAACTAATTTTAGAAACA-AAA-AACTTATAGAGTTCATTCTTTGAATGCTAAAATTGTTATTTTCAATAAATATTGC---AATGATTTGGAAAT
i otoGar3.GL873538             I 118 C 0
s canFam3.chr2                  79098562 223 -  85426708 ACATTGATAAT----C-------------------------------------------ATTATTCAAGTGAGATTAATTTGAATATGGAAGCATGGGT-----GTTTTTTT-AAGATAGCTAATTTTGGGGGGTGACAGCTGTTTC-AAACAAACC-------TCTTCAAGACTGA-CATGGTCTACCAAATCAGACTGATTTTGGAAACACAAG-AAATGATAGAGTCCATTCATTAAATGCTAAAATTGTTACTATCAGTAAATATGAC---ACTGATTTTGAAAT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1721772 219 -   2296528 ------GCATGGCGTA-------------------------------------------GTTACTCAAATGAGAATAA-TTAAATAGAGAAACATTAG------CTTTTTTT-------GGTAATTTTTTGGTAAGATGACTGTTTC-AAAAAAAACCCACAAACTTTAAAGATTAC-TGTGAAATACTAAACCAAACTAATTTTGGAAACA-AAAGAAATACTAAAACTGTTTTCACTAAC----AATTTACTAAATTCACTAAAAATTACAGTACTGATTTTTAAAT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chr13                 40403678 909 - 128036923 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=12376.000000
s hg38.chr14_GL000009v2_random     21235 1 +    201709 A
s panTro5.chr9                  41697224 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96041647 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           78268 1 -    416926 A
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40815229 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111080063 1 - 111193037 A
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          349947 1 +    434444 A
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          397270 1 -    438202 A
i cerAty1.NW_012002921v1       C 0 C 0
s papAnu3.chr13                 40404587 1 - 128036923 A
i papAnu3.chr13                I 909 I 97
s chlSab2.chr2                  66447018 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1497466 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           12637 1 +    168452 A
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64636960 1 -  72162052 A
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1054555 1 +   1314817 A
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19648447 1 -  27850971 A
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79098785 1 -  85426708 A
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1721991 1 -   2296528 A
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=670303.000000
s hg38.chr14_GL000009v2_random     21236 97 +    201709 TAAATATGTATTAATATCCAGCAAGTCTGTGGTCATTCAAT----GTTTTCTT-TTTTGATAA--ATATTTTCATATCAGAAGCTTATTCGACATGGTTTATTT
s panTro5.chr9                  41697225 97 + 116767853 TAAATATGTATTCATATCCAGTAAGTCTGTGGTCATTCAGT----GTTTTCTT-TTTTGATAA--ATATTTTGATATTGGAAGCTTATTCAACATGGTTTATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96041648 97 - 114479721 TAAATATGTATTCATATCCAGTAAGTCTGTGGTCATTCAGT----GTTTTCTT-TTTTGATAA--ATATTTTGATATTGGAAGCTTATTCAACATGGTTTATTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           78269 97 -    416926 TAAATATGTATTCGTATCCAGCAAGTCTGTGGTAATTCAGT----GTTTTCTT-TTTTGATAA--ATATTTTGATATCGGAAGCTTATTCGACATGGTTTATTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40815230 97 + 122973662 TAAAAGTGTATTTGTATCCAGCAAGTCTGTGGTAATTCAGT----GTTTTCTT-TTTTGATAA--ATATTTCGATATTGGAAGCTGATTTTACATGGTTTATTT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111080064 97 - 111193037 TAAAAGTGTATTCATATCCAGGAAGTCTGTGGTATTTCAGT----GTTTTCTT-TTTTGATAA--ATATTTTGATATTTTTAACTGATTCTACATGGTTTATGT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          349948 97 +    434444 TGAAAGTGTATTCGTATCCAGCAAGTCTGTGGTAATTCAAT----GTTTTATT-TTTTGATAA--ATGTTTTGATATTGGAAGCTTATTCTACACGGTTTGTTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          397271 97 -    438202 TGAAAGTGTATTCATATCCAGCAAGTCTGTGGTAATTCAAT----GTTTTCTT-TTTTGATAA--ATGTTTTGATATTGGAAGCTTATTCTACACGGTTTGTTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66447019 97 +  90373283 TGAAAGTGTATTCATATCCAGCAAGTCTGTGGTATTTCAGT----GTTTTCTT-TTTTGATAA--ATGTTTTGATATTGGAAGCTTATTGTACATGGTTTGTTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1497467 97 -   1547936 TGAAAGTGTATTCATATCCAGCAAGTCTGTGGTAATTCAAT----GTTTTCTT-TTTTGATAA--ATGTTTTGATATTGGAAGCTTATTCTACACGGTTTGTTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           12638 97 +    168452 TAAAAATGTATTCATATCCACCAAGTCTGTGGTATTTCAGT----GTTTTCTT-TTTTGATAA--ATATTTTGATATTGGAAACTGATTCTACATGGTTTATTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64636961 97 -  72162052 TAAAAGTTTATTCATATTCGGCACATCTGTGGTGATTTAGC----GTTTTCTT-TTTTAGTAA--ATATTTTGATGTCGAAAGCTTATTCTACATGGTTCATTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1054556 96 +   1314817 T-AAAGTTTATTCATATTCAGCAAGTCTGTGGTGATTCAGT----GTTTTCTT-TTTTGATAA--ATATTTTGATGTTGAAAGATTATTCTACATGGTTCATTT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19648448 91 -  27850971 TAAGA---TATTAATATCTAATAATTTTGTGAAAATTTAAT----TTTTTCCT-TTTTGACAA--ATATTTCAATATTAAAAACTTAT---ACATTATTTCTTA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79098786 99 -  85426708 ---CAGATTTCTAGTATCTAAAAATTTGGTGGCAATTAAATTGA-TTTTTCTCATTTTGGTAGTCATAGTTCCATATTGAAAGCTTATTATACATTATTTCTT-
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1721992 98 -   2296528 TAAAAGGTTATTAATATCTAA-----TTGTGACAATTAAGTTTATTTTTTCCT-TTTTGATAACAGTATTCCAATATTGAAAGATTACTATACATTATTTCTTA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chr13                 40404588 97 - 128036923 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=37372.000000
s hg38.chr14_GL000009v2_random     21333 4 +    201709 GATG
s panTro5.chr9                  41697322 4 + 116767853 GATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96041745 4 - 114479721 GATG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           78366 4 -    416926 TATG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40815327 4 + 122973662 GATG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111080161 4 - 111193037 GATG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          350045 4 +    434444 GGTG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          397368 4 -    438202 GGTG
i cerAty1.NW_012002921v1       C 0 C 0
s papAnu3.chr13                 40404685 4 - 128036923 GATG
i papAnu3.chr13                I 97 I 11290
s chlSab2.chr2                  66447116 4 +  90373283 GGTG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1497564 4 -   1547936 GGTG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           12735 4 +    168452 GATG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64637058 4 -  72162052 GATG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1054652 4 +   1314817 GGTG
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19648539 4 -  27850971 GATG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79098885 4 -  85426708 AATG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1722090 4 -   2296528 GACG
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=4041439.000000
s hg38.chr14_GL000009v2_random     21337 586 +    201709  
s panTro5.chr9                  41697326 586 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96041749 586 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           78370 581 -    416926  
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40815331 586 + 122973662  
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111080165 581 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          350049 571 +    434444  
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          397372 575 -    438202  
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66447120 582 +  90373283  
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1497568 575 -   1547936  
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           12739 586 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64637062 571 -  72162052  
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1054656 575 +   1314817  
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19648543 592 -  27850971  
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79098889 605 -  85426708  
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1722094 621 -   2296528  
i dasNov3.JH570393             C 0 C 0
e papAnu3.chr13                 40404689 11290 - 128036923 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1030064.000000
s hg38.chr14_GL000009v2_random     21923 155 +    201709 TTTTTATAGCCAGGCCTGAGAATTCAG----CTCGACAGTAACACTGCATGAATGTTTGGTTGGCCTTG------TCATACTTACATAT-----------------------------------------AATTGATGACATAT--CCCCTTTGCTTTGTAGGGCCTCCTGCAAAACATCCTTCCTTGAAGGTAATTAATTATGTATA
s panTro5.chr9                  41697912 150 + 116767853 TTTTTATAGCCAGGCATGAGAATTCAG----CTTGATAGTAACACTGCAGGAATGTTTGGTTGGCCCTG------TCATGCTTACATAT-----------------------------------------AATTGATGACATAT--CCCCTTTGCTTTGTAAGGCCTCCTGCAAAACATCCTTCCTTGAAGGTAATTAATTA-----A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96042335 151 - 114479721 TTTTTATAGCCAGGCATGAGAATTCAG----CTCGATAGTAACACTGCAGGAATGTTTGGTTGGCCCTG------TCATGCTTACATAT-----------------------------------------AATTGATGACATAT--CCCCTTTGCTTTGTAAGGCCTCCTGCAAAACATCCTTCCTTGAAGGTAATTAATTA----AA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           78951 154 -    416926 TTTTTATAGCCAGGCATGAGAATTCAG----CTCGATAGTACCACTGCATGAATGTTTGGTTGGCCCTG------TCATACTTACATAT-----------------------------------------AATTGATGACATAT---CCCTTTGCTTTGTAGGGCCTCCTGCAAAACATCCTTCCTTGAAGGTAATTAATTATGTATA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40815917 155 + 122973662 TTTTTATAGCCAGGCATGAGAACTCAG----CTCGATAGTAACACTGCATGAATGTTTGGTTGGCCCAG------TCATACTCAGATAT-----------------------------------------AATTGATGACATAT--CCCCTTTGCTTTGTAGGGCCTCCTGCAAAACATCCTTCCTTGAAGGTAATTAATTATGTATA
i nomLeu3.chr1a                C 0 I 1
s macNem1.NW_012012823v1          350620 161 +    434444 TTTTTATAGCCAGGCATGAAAACTCAG----CTTGATAGTAACACTGCGTGAATGTTTGGTTGGCCCTGTCATACTCATACTTACATGT-----------------------------------------AATTGATGACATAT--CCCCTTTGCTTTGTAGAGCCTCCTGCAAAACATCCTTCCTTGAAGGTAATTAATTATGTATA
i macNem1.NW_012012823v1       C 0 I 1
s cerAty1.NW_012002921v1          397947 161 -    438202 TTTTTATAGCCAGGCATGAAAACTCAG----CTTGATAGTAACACTGCATGAATGTTTGGTTGGCCCTGTCATACTCATACTTACATGT-----------------------------------------AATTGATGACATAT--CCCCTTTGCTTTGTAGAGCCTCCTGCAAAACATCCTTCCTTGAAGGTAATTAATTATGTATA
i cerAty1.NW_012002921v1       C 0 I 1
s chlSab2.chr2                  66447702 161 +  90373283 TTTTTCTGGCCAGGCATGAGAATTCAG----CTTGATAGTAACACTGCATGAATGTTTGCTTGGCCCTGTCATACTCATACTTACTTGT-----------------------------------------AATTGATGACATAT--CCCCTTTGCTTTGTAGGGCCTCCTGCACAACATCCTTCCTTGAAGGTAATTCATTATGTATA
i chlSab2.chr2                 C 0 I 1
s manLeu1.NW_012105442v1         1498143 161 -   1547936 TTTTTATAGCCAGGCATGAAAACTCAG----CTTGATAGTAACACTGCATGAATGTTTGGTTGGCCCTGTCATACTCATACTTACATGT-----------------------------------------AATTGATGACATAT--CCCCTTTGCTTTGTAGAGCCTCCTGCAAAACATCCTTCCTTGAAGGTAATTAATTATGCATA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           13325 155 +    168452 TTTTTATAGCCAGGCATGAGAATTCAG----CTTGATAGTAACACTGCCTGAATGTTTGGTTGGCCCTG------TCATACTTACATAT-----------------------------------------AATTGATGACATAT--CCCCTTTGCTTTGTAGGGTCTTTTGCACAACATCCTTCCTTGAAGGTAATTAATTATGTATA
i colAng1.NW_012121088v1       C 0 I 1
s saiBol1.JH378105              64637633 154 -  72162052 TTTTTATGGCCAGGCATGAGGACTCAG----CTTGGTAGTAATACTGCATGAATGTTTGGTTGGCCCTG------TCATACTTATATAT-----------------------------------------AATTTACGACATGT--CCCCTTT-TTTTGTAGGGCCTCCTGCAAAACAGCTTTCTGGGAAGGtaattaattatatatt
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1055231 155 +   1314817 TTTTCATGGCCAGGCATGAGGACTCAG----CTGGGTAGTAACACTGCATGAATGTTTGGTTGGCCCTG------TCATACTTACATAT-----------------------------------------AACTGATGACATGT--CCCCTTTGCTTTGTAGGGCCTCCTGCAAAACAGCCGTCTTGGGAGGTAATTAATTATGTATT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19649135 155 -  27850971 TTTTCATAGACAAGCATCAGGATTCAG----CTTGATACTAACTCTGCATGAACGTATAGTTGGCTTGG------TCATACTTACCTAT-----------------------------------------GACTGATTGTATGT--CCCTTTTACATTTTAGAGTCTCCTAAGAGATATCCTCACTTGAAGGTAATAACTTTTATCTT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79099494 195 -  85426708 CTTTCAAAGCCAAGCATGAGGATTCATTCACCTTAATATTAA--CTGCAGGAATGTATAGTTG--CCTT------TCATATTTACGTATAAACTACATGTCCCaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaCTACATGT--CCCTTTTGCATTTTAGAATCTCCTGGAAAAGATCTTCATTGGAAGGTAA-AGCTTATGTATT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1722715 158 -   2296528 TTTTCTAAGCCAAGCATGAGGATTCAG----CTTGATACTAATTCTGCATGAATGCTGACTTGCCTTTT-----ATCATCTTCACATGT-----------------------------------------AATTGATTACATATGTTCCTTTCGCTTCTTAGGTTCTCCTGAGAAATATCCACATTTGAAGGTAATTACTTTCATATT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chr13                 40404689 11290 - 128036923 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e macFas5.chr13                111080746   0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=10920.000000
s hg38.chr14_GL000009v2_random     22078 1 +    201709 T
s panTro5.chr9                  41698062 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96042486 1 - 114479721 T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           79105 1 -    416926 T
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40816073 1 + 122973662 T
i nomLeu3.chr1a                I 1 C 0
s macNem1.NW_012012823v1          350782 1 +    434444 T
i macNem1.NW_012012823v1       I 1 C 0
s cerAty1.NW_012002921v1          398109 1 -    438202 T
i cerAty1.NW_012002921v1       I 1 C 0
s papAnu3.chrUn_NW_003942831v1       796 1 +     21175 T
i papAnu3.chrUn_NW_003942831v1 n 11290 n 11290
s chlSab2.chr2                  66447864 1 +  90373283 T
i chlSab2.chr2                 I 1 C 0
s manLeu1.NW_012105442v1         1498304 1 -   1547936 T
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           13481 1 +    168452 T
i colAng1.NW_012121088v1       I 1 C 0
s saiBol1.JH378105              64637787 1 -  72162052 t
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1055386 1 +   1314817 T
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19649290 1 -  27850971 T
i otoGar3.GL873538             C 0 I 3
s canFam3.chr2                  79099689 1 -  85426708 T
i canFam3.chr2                 C 0 I 3
s dasNov3.JH570393               1722873 1 -   2296528 T
i dasNov3.JH570393             C 0 C 0
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e macFas5.chr13                111080746 0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1048960.000000
s hg38.chr14_GL000009v2_random     22079 154 +    201709 ---TTTTGAATCACTAACTCCATGTTGTATAAAATATATATGATTTATGAATCGTTATC-TTTTAAAACCCATTCAGCCTAGCACTGAAGTGGAAGATCCTGCTGTGAAAGGAGCAGTACAAAGAAAGTATGTACAGACATTGAGAGCAGGTACATTT
s panTro5.chr9                  41698063 153 + 116767853 ---TTTTGAATCACTAACTCCATGTTGTATAAAATATATATGATTTATGAATCATTTTC-TCTTAAAACCCATTCAGCCTAGCACTGACGTGGAAGATCCTGCTGTGAAAGGAG-AGTACAAAGAAAGAATGTACAGACATTGAGAGCAGGTACATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96042487 153 - 114479721 ---TTTTGAATCACTAACTCCATGTTGTATAAAATATATATGATTTATGAATCATTTTC-TCTTAAAACCCATTCAGCCTAGCACTGATGTGGAAGATCCTGCTGTGAAAGGAG-AGTACAAAGAAAGAATGTACAGACATTGAGAGCAGGTACATTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           79106 154 -    416926 ---TTTTGAATCACTAACTCCATGTTGTATAAAATATATATGATTTATGAATCATTTTC-TTTTAAAACCCATTCAGCCTAGCACTGAAGTGGAAGATCCTGCTGTGAAAGGAGCAGTACAAAGAAAGAATGTACAGACATTCAGAGCAGGTACATTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40816074 154 + 122973662 ---TTTTGAATCACTAACTCCATATTATATAAAATATATATGATTTATGAATCATTTTC-TTTTAAAACCCATTCAACCTAGCACTGAGATGGAAGATCCTGCTGTGAAAGGAGCAGTACAAAGAAAGAATGTACAGACATTGAGAGCAGGTATGTTT
i nomLeu3.chr1a                C 0 I 8
s macNem1.NW_012012823v1          350783 154 +    434444 ---TTTTGAATCACTAACTCCATATTGTATAAAATATATATGATTTATGAATCATTTTC-TTTTAAAACCCATTCAGCCTAGCACTAAAATGGAAGATCCTGCTGTGAAAGGAGCAGAACAAAGAAAGAATGTTCAGACATTGAGAGCAGGTACATTT
i macNem1.NW_012012823v1       C 0 I 8
s cerAty1.NW_012002921v1          398110 154 -    438202 ---TTTTGAATCACTAACTCCATATTGTATAAAATATATATAATTTATGAATCATTTTC-TTTTAAAACCTATTCAGCCTAGCACTAAAATGGAAGATCCTGCTGTGAAAGGAGCAGTACAAAGAAAGAATGTTCAGATATTGAGAGCAGATACGTTT
i cerAty1.NW_012002921v1       C 0 I 8
s chlSab2.chr2                  66447865 152 +  90373283 ---TTTTGAATCACTAACTCCATATTGTATAAAATATATATGATTTATGAATCATTTTC-TTTTAAAACCCTTTCAGCCTAGCACTGAAATGGAAGATCCTGCTGTGAAAGGAGCAATACAAAG--AGAATGTTCAGACATTGAGAGCAGGTATGTTT
i chlSab2.chr2                 C 0 I 8
s manLeu1.NW_012105442v1         1498305 154 -   1547936 ---TTTTGAAGCACTAACTCCATATTGTATAAAATATATATGATTTATGAATCATTTTC-TTTTAAAACCTATTCAGCCTAGCACTAAAATGGAAGATCCTGCTGTGAAAGGAGCAGTACAAAGAAAGAATGTTCAGATATTGAGAGCAGGTACGTTT
i manLeu1.NW_012105442v1       C 0 I 8
s colAng1.NW_012121088v1           13482 155 +    168452 ---TTTTGAAGCACTAATTCCATATTGTATAAAATAGATATGATTTATGAATCATTTTCTTTTTAAAACCCATTCAGCCTAGCACTAAGATGGAAGATCCTGCTGTGAAAGGGGCAGTACCAAGAAAGAAAGTACAGACCTTGAGAGAAGGTACGTTT
i colAng1.NW_012121088v1       C 0 I 8
s saiBol1.JH378105              64637788 154 -  72162052 ---ttttGAATTACTAACTCCATGTTGTATAAAATATATATGATTTGTTAATAATTTTC-TTTTAAAACCCATTCAGCCTACCACTGAAAGGGAAGATCCTGCTGTGAAAGAAGTGGTACAGAAAAAGAACGAACAGACATCGAGAGCAGGTACATTT
i saiBol1.JH378105             C 0 I 8
s cebCap1.NW_016107851v1         1055387 154 +   1314817 ---TTTTGAATTACTAACTCCATGTCGTATAAAGTATATATGATTTATCAATCATTTTA-TTTTAAAACCCATTCAGCCAGCCACTGAAATGGGAGATTCTGCTGTGAAAGACGTGGTACAGAGAAAGAGTATACAGACATCGAGAGCAGGTACATTT
i cebCap1.NW_016107851v1       C 0 I 25
s otoGar3.GL873538              19649294 151 -  27850971 ---TCTTGAATTATTAACTACACATTGTATGGAATCTACATTATTTATTAA---TTTTG-TTTCAAAACCCGTTTAGCCTACCACTGAAATGAAAGATTGTGTTCCGAATAAAGCAGTAGGAGTGAAGGACATACAAACATATAGATCAGGTAAATTT
i otoGar3.GL873538             I 3 I 9
s canFam3.chr2                  79099693 152 -  85426708 ---TTTTGAATTTCTAACTACAGATTGTATGAAATATACAT--TGTCTTAATCATATTG-TTTCAATACCCTTCCAGTCTACCACTGAAGTGAAAGATTCTGTTACTAATGAAGCAGTAGCAGGGAAAGATCAACAAATGTCCAGATCAGGTAAATTT
i canFam3.chr2                 I 3 I 9
s dasNov3.JH570393               1722874 156 -   2296528 TTATCTTCAATTATTAA-TACAGATTGTATTAAGTATACTTTATTTGTTAATCATCTTG-TTTCAAAGGTCATTCAGCCTGTCGTTGAAATGAAAGATCCTGAACCTAATAAAGCAGTAGGAATTAAGAATATACAAACATCCAAATCAGGTAAATTT
i dasNov3.JH570393             C 0 I 9
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e macFas5.chr13                111080746   0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=94631.000000
s hg38.chr14_GL000009v2_random     22233 18 +    201709 AATGGAATACTGGAAATA
s panTro5.chr9                  41698216 17 + 116767853 AATGGAATACTGGAAAT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96042640 17 - 114479721 AATGGAATACTGGAAAT-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           79260 17 -    416926 AATGGAATACTGGAAAT-
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40816236 17 + 122973662 AATGGAATGCTGGAAAT-
i nomLeu3.chr1a                I 8 C 0
s macNem1.NW_012012823v1          350945 17 +    434444 AATGGAATGCTGGAAAT-
i macNem1.NW_012012823v1       I 8 C 0
s cerAty1.NW_012002921v1          398272 17 -    438202 AATGGAATGCTGGAAAT-
i cerAty1.NW_012002921v1       I 8 C 0
s chlSab2.chr2                  66448025 17 +  90373283 AATGGAATGCTGGAAAT-
i chlSab2.chr2                 I 8 C 0
s manLeu1.NW_012105442v1         1498467 17 -   1547936 AATGGAATGCTGGAAAT-
i manLeu1.NW_012105442v1       I 8 C 0
s colAng1.NW_012121088v1           13645 17 +    168452 AATGGAATGCTGGAAAT-
i colAng1.NW_012121088v1       I 8 C 0
s saiBol1.JH378105              64637950 17 -  72162052 AAGAGAATGCTGGAAAC-
i saiBol1.JH378105             I 8 C 0
s otoGar3.GL873538              19649454 17 -  27850971 GATTTAACTCTGGAAAG-
i otoGar3.GL873538             I 9 C 0
s canFam3.chr2                  79099854 17 -  85426708 AATTTAACTGTGGGAAG-
i canFam3.chr2                 I 9 C 0
s dasNov3.JH570393               1723039 17 -   2296528 AATTTAACTCTGGAAAT-
i dasNov3.JH570393             I 9 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e cebCap1.NW_016107851v1         1055541 25 +   1314817 I
e macFas5.chr13                111080746  0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=207602.000000
s hg38.chr14_GL000009v2_random     22251  57 +    201709 AAGTACATTCAATGATTG-GATGTACTCATATTATTCTT-ATTCCTAATTC------------------------------------------------------------TATTTGTT
s panTro5.chr9                  41698233  57 + 116767853 AAGTACATTCAATGATTG-GATGTACTCATATTATTCTT-ATTCCTAATTC------------------------------------------------------------TATTTGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96042657  57 - 114479721 AAGTACATTCAATGATTG-GATGTACTCATATTATTCTT-ATTCCTAATTC------------------------------------------------------------TATTTGTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           79277  57 -    416926 AAGTACATTCAATGATTG-GAAGTACTCACATTATTCTT-ATTCCTAATTC------------------------------------------------------------TATTTGTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40816253  57 + 122973662 AAGTACATTCAATGATTG-GAAGTACTCACGTTATTCTT-ACCCCTAATTC------------------------------------------------------------TATTTGTT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          350962  49 +    434444 AAGTACATCAAATGATTG-AAAGTACTGACATTATTCTTAACCCCTAATT---------------------------------------------------------------------
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          398289  50 -    438202 AAGTACCTCAAATGATTGAAAAGTACTCACATTATTCTTAACCCCTAATT---------------------------------------------------------------------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66448042  49 +  90373283 AAGTACATCAAATGATTG-AAAGTACTGACATTATTCTTAACCTCTAATT---------------------------------------------------------------------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1498484  50 -   1547936 AAGTACCTCAAATGATTGAAAAGTACTCACATTATTCTTAACCCCTAATT---------------------------------------------------------------------
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           13662  49 +    168452 AAGTACATCAAATGATTG-AAAGTACTCACATTATTCTTAACCCCTAATT---------------------------------------------------------------------
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64637967  57 -  72162052 AAGTACATTAAAGGATTG-CAAGTATTCACATTTGTCTC-ACCCCTAATTC------------------------------------------------------------TATTTGTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1055566  57 +   1314817 AAGTACATTAAATGATTG-CAAGTACTCACATTCGTCTT-ACCCCTAATTC------------------------------------------------------------TATTTGTT
i cebCap1.NW_016107851v1       I 25 C 0
s otoGar3.GL873538              19649471  71 -  27850971 AAGTGCATTAAAATATTG-GAAATGCTCACAGTCTTCTT-ATTTCCAACTC------------------------TTTTCTTTAATC----------------------AGTGTTTTTT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79099871 117 -  85426708 AAGTACACTAAAATATTT-GGAATGCCCATAATCTTCTT-ATACCAAATTCTTGTGTGTGTGTGTGTGTGGCaatttttttttaatttttatttttgtgtgtgtgtgtgtgtgtgtgtg
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1723056  57 -   2296528 CAGTAAATTAAGATATTT-GAAATGCTCACAGTAttctt-ttttttttttt------------------------------------------------------------tttttttt
i dasNov3.JH570393             C 0 I 1614
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e macFas5.chr13                111080746   0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=-219.000000
s hg38.chr14_GL000009v2_random     22308 4 +    201709 CAAT
s panTro5.chr9                  41698290 4 + 116767853 CAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96042714 4 - 114479721 CAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           79334 4 -    416926 CAAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40816310 4 + 122973662 CAAA
i nomLeu3.chr1a                C 0 C 0
s saiBol1.JH378105              64638024 4 -  72162052 TTAC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1055623 4 +   1314817 TTAC
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19649542 4 -  27850971 CCCA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79099988 4 -  85426708 GCAA
i canFam3.chr2                 C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e colAng1.NW_012121088v1           13711 0 +    168452 C
e dasNov3.JH570393               1723113 1614 -   2296528 I
e manLeu1.NW_012105442v1         1498534 0 -   1547936 C
e chlSab2.chr2                  66448091 0 +  90373283 C
e cerAty1.NW_012002921v1          398339 0 -    438202 C
e macNem1.NW_012012823v1          351011 0 +    434444 C
e macFas5.chr13                111080746 0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=469204.000000
s hg38.chr14_GL000009v2_random     22312  95 +    201709 ATTGAACAGAAGGCATTGACATAA----------ATGTTA-TTGTTGGTATCCATATTTGAATAA---AAACAAATTTAGAAGCATAAAA----AAGA--TTTTAAAAATGTAAG
s panTro5.chr9                  41698294  95 + 116767853 ATTGAATGGAAGACATTGACATAA----------ATGTTA-TTGTTGGTATCCATATTTGAATAA---AAACAAATTTAGAAGCATAGAA----AAGA--TTTTAAAAATATAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96042718  95 - 114479721 ATTGAATGGAAGACATTGACATAA----------ATGTTA-TTGTTGGTATCCATATTTGAATAA---AAACAAATTTAGAAGCATAGAA----AAGA--TTTTAAAAATATAAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           79338  95 -    416926 ATTGAATGGAAGGCATTGACATAA----------ATGTTA-TTGTTGGTATCCATATTTGAATAA---AAATAAATTTAGAAGCATAAAA----AAGA--TTTTAAAAATGTAAG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40816314  95 + 122973662 ACTGAATGGAAGGCATTGACATAA----------ATGTTA-TTGTTGGTATCCATATTTGAATAA---AAATAAATTTAGAAGCATAAAA----AAGA--TTTTAAAAATGTAAG
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          351011  83 +    434444 -------------CATTGACATAA----------ATGTTATTTGTTGGTATCTACATTTGAATAA---AAATAAATTTAGAAGCATAAAA----AAGA--TTTTAAAAATGTAAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          398339  83 -    438202 -------------CATTAACATAA----------ATGTTA-TTGTTGGTATCTACATTTGAATAA---AAATAAATTTAGAAGCATAAAA----AATA-TTTTTAAAAATGTAAG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66448091  81 +  90373283 -------------CATTGACATAA----------ATGTTA-TTGTTGGTATCTACATTTGAATAA---AAATAAATTTAGAAGCAT-AAA----AATA-TTTTT-AAGATGTAAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1498534  83 -   1547936 -------------CATTAACATAA----------ATGTTA-TTGTTGGTATCTGTATTTGAATAA---AAATAAATTTAGAAGCATAAAA----AATA-TTTTTAAAAATGTAAG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           13711  82 +    168452 -------------CATTGACATAA----------ATGTTA-TTGTTGGTATCCATATTTGAATAA---AAATAAATTTAGAAGCCATAAA----AATA-TTTTT-AAAATGTAAG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64638028  87 -  72162052 ATTGAATGGAAAGCATTGATGTAA----------ATGTTA-TTATAGATA---------AAATAA---AA--AAATTTAGAAGCATAAGAAAATAAGA--TTTT-AAAATGTAAG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1055627  87 +   1314817 ATTGAATGGAAGGCATTGATGTAA----------ATGTTA-TTATAGGta---------aaatta---aa--aaatttagaagcataagaaaataaga--tttt-aaaatgtaag
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19649546 109 -  27850971 AGTCAATGGAAGGATTTGACATAAATAATACAG-ATGTTA-TTTTTGGTGTCCATGTTTTAAAGAAGGAAGGATATTTACAAGCCTGAGC----AAGAGGGTTTAAAAATGTAAA
i otoGar3.GL873538             C 0 I 265
s canFam3.chr2                  79099992 107 -  85426708 ATTTAATTGAAGGATTTGACATAAATAAGGTAG-GTGTCA-TTGCTGATATCCATGTTTGAACAA---AAG-ATATTTACAAACATAAGAGAAAGAGA--TTTTAAAAATGTAAG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1724727 108 -   2296528 ATTAAATTGAAGGAGTTGACATAAGTAGTGCAATATGTCA-CTGTTGGTATCTATATTTGGAAAA---GAG-GTATTTCTAAGCATAAGAAAAAGAGA--CTTTTGAAATGTAAG
i dasNov3.JH570393             I 1614 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e macFas5.chr13                111080746   0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1576709.000000
s hg38.chr14_GL000009v2_random     22407 258 +    201709 CTTTAAGTCAGATGTTTCTGTTTAAATGTTTTGAATAGCATGAAGTTTTCAGTATAAAATTTTTATACTTGTCAGGGATTCAAAGCAGTGAATTTTGAGACTC-TTAAGATATTTCCAGTGAGTT-AAGTGCTAGTTGGAGTTCTGATCTTTACCTAGAGGAAAGCTTTACT---TATTAAAGTGTCAGTTTCTGTTTTAACTTCAGAGGCTTGCTGC-------TAGTGTTATTACACTGATGATCTGAAACCTATCAGATGTTCTAAT
s panTro5.chr9                  41698389 256 + 116767853 CTTTAACTCAGATGTTTCTGTTTTAATGTTTTGAATAGCATGAAGTTTTCAGTATAAAATTTTCGTCCTTGTCAGGGATTCAAAGCAGTGAATTTTGAGACTC-TTAAGATATTTCCA--GAGTT-AACTGTTAGTTGGAGTTCTGATCTTTACCTAGAGGAAAGCTTTACT---TATTAACATGTCAGTTTCTGTTTTAACTTCAGAGGCTTGCTGC-------TAGTGTTATTACACTGATGATCTGAAGCCAATCAGATGTTCTAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96042813 256 - 114479721 CTTTAACTCAGATGTTTCTGTTTTAATGTTTTGAATAGCATGAAGTTTTCAGTATAAAATTTTCGTCCTTGTCAGGGATTCAAAGCAGTGAATTTTGAGACTC-TTAAGATATTTCCA--GAGTT-AACTGTTAGTTGGAGTTCTGATCTTTACCTAGAGGAAAGCTTTACT---TATTAACATGTCAGTTTCTGTTTTAACTTCAGAGGCTTGCTGC-------TAGTGTTATTACACTGATGATCTGAAGCCAATCAGATGTTCTAAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           79433 257 -    416926 CTTTAACTCAGATGTTTCTCTTTTAATGTTTTGAATAGCATGAAGTTTTCAGTATAAAATTTTTATACCTGTCAGGGATTCAAAGCAGTGAATTTTGAGACTC--TAAGATATTTCCATTGATTT-ATGTGCTAGTTGGAGTTCTGATCTTTACCTAGAGGAAAGCTTTACT---TATTAACGTGTCAGATTCTGTTTTAACTTTAGAGGCTTGCTGC-------TAGTGTTATTACACTGATGATCTGAAGCCAATCAGATGTTCTAAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40816409 257 + 122973662 CTTTAACTGAGATGTTTCTATTTTAATATTTTGAATAGCATACAGTTTTCAATATAAAATTTTTATTCTTGTCAGGGATTCAAAGCGGTGAATTTTGAGACTC--TAAGATATTTCCAGTGAGTT-ATGTGCTAGTTGGAGTTCTGATCTTTACCTAGAGGAAAGCTTTACT---TATTAATGTGTCAGTTTCTGTTTTAACTTTAGAGGCTTGCTGC-------TAGTGTTATTACACTGATGATCTGAAGCCAATCAGATGTTCTAAA
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          351094 257 +    434444 CTGTAACTCAGATGTTTCTGTTTTAATGTTTTGAATAGCATAAAGTTTTCAATATAAAATTTTTATACTTGTCAGGGATTCAAAGCAGTGAATTTTGAAACTC--TAGGATATTTCCAGTGAGTT-ATGTGCTAGTTGGAGTTCTGATCTTTACCTAGAGGAGAGCTTTGCT---TATTAACGTGTCAGTTTCTGTTTTAACTTTAGAGACTTGCTGC-------TAGTGTTATTACACTGATGATCTGAAGCCAATCAGATGTTCCAAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          398422 256 -    438202 CTTTAACTCAGATGTTTCTGTTTTAA-GTTTTGAATAGCATAAAGTTTTCAATATAAAATTTTTGTACTTGTCATGTATTCAAAGCAGTGAAATTTGAGACTC--TAAGATAATTCCAGTGAGTT-ATGTGCTAGTTGGAGTTCTGATCTTTACCTAGAGGAAAGCTTTACT---TATTAACGTGTCAGTTTCTGTTTTAACTATAGAGACTTGCTGC-------TAGTGTTATTACACTGATGTTCTGAAGCCAATCAGATGTTCCAAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66448172 257 +  90373283 CTTTGACTCAGATGTTTCTCTTTTAATATTTTGAATAGCATAAAGCTTTCAATATAAAATTTTTGTACTTGTCATGGATTCAAAGCAGTGAATTTTGAGACTC--TAGGATATTTCCAGTGAGTT-ATATGCTAGTTGGAGTTCTGATCTTTACCTAGAGGAAAGCTTTACT---TATTAACGTGTCAGTTTCTGTTTTAACTATAGAGACTTGCTGC-------TAGTGTTATTACACTGATGATCTGAAGCCAATCAGATGTTCCAAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1498617 256 -   1547936 CTTTAACTCAGATGTTTCTGTTTTAA-GTTTTGAATAGCATAAAGTTTTCAATATAAAATTTTTATACTTGTCAGGGATTCAAAGCAGTGAATTTTGAGACTC--TAGGATATTTCCAGTGAGTT-ATGTGCTAGTTGGAGTTCTGATCTTTACCTAGAGGAAAGCTTTACT---TATTAACGTGTCAGTTTCTGTTTTAACTATAGAGACTTGCTGC-------TAGTGTTATTACACTGATGTTCTGAAGCCAATCAGATGTTCCAAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           13793 256 +    168452 CTTCAACTCAGATGTTTCTCTTTTAATATTTTGAATAGAATAAAGTTTTCAATGTGAAATTTTT-TACTTGTCAGTTATTCAAAGCAGTGAATTTTGAGACTG--TAAGATATTTCCAGTGAGTT-ATGTGCTGGTTGGAGTTCTGATCTTTACCTAGAGGAAGGCTTTATT---TATTAACTTGTCAGTTTCTGTTTTAACTTTAGAGGCTTGCTGC-------TAGTGTTATTACACTGATGATCTGAAGCCAATCAGATTTTCCAAT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64638115 238 -  72162052 CTTTAATTCA--------------AATGTTTTGAATACCATAAAACTTTCAATATAAAATTTTTATACTTGTCAGAGATTCAAAGCAGTGAATGTTGAGACAC--TAAGATATTTCCAGTGTGTT-ATGTGCTAGTTGAAGTTCTGATCTTTACCTAGAGGAAAGTTTTACT---TACTAACATGTCAGTT-----TCTAACTTCAGAAACTTCCTGC-------TAGCGTTATTACACTGGAGATCTAAAGCCAATCAGATGTTCTAAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1055714 249 +   1314817 ctttaaTTCA--------------AATGTTTTGAATAGCATAAAATTTTCAATATAAAATTTTTATACTTGTCAGAGATTCAAAGCAGTGAATTTTGAGACAC--TAAGATATTTCCAGTGTATT-ATATGCTAGTTAAAGTTCTGATCTTTACCCAGAGGAAAGCTTTACT---TACCAACATGTCAGTT-CTGCTTTAACTTCAGAGACTTCCTGCTAGTGTTTAGTGTTATTACACTGGTGATCTGAAGCCAATCAGATGTTCTAAT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19649920 252 -  27850971 CTTTAAGTCAGATGCTTCTACTTTTATGTTCTG-------TAAAgttcccaactcggaatctctttacttgttagggattcacagaggtgaattatgagattc--tacaatttttccaatgtttc-aaatacttgttggcattctgatcattacctaaaggaaaagttcactagctattaatgtgtcaatt-cttttttaacttttattatttcttct-------tagtgttcttacactgatgatgttaagccaatcagatattctgat
i otoGar3.GL873538             I 265 C 0
s canFam3.chr2                  79100099 242 -  85426708 CTTTAGCTCAA--GTTTCTACTTTTAAGTTTTGAA-ATCCTAATGTTCCCAGTTTGGAATTCCTTTACTTCTTTGGGATTCCCAGAAGTTAATTATTAGACTC--TAAGACTTTTCCACTGTTCA-CCATACTTATTTGAATTCTA----TTACCTAAAGCAAAGCTTCACT---TGCTAACATGTCAGTT-GTGTTTGAACTTCA----TTTCATCT-------TTG---TATTATATTAATCATTTTAAGTGAAACACTTGTTCTGAT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1724835 215 -   2296528 --------------------CTTTATTATT------ACTCTAAAGTTCCCTGT-TAGAATCTCTATACTG---AGGGATCCACAGAGTTTAATAATGGAATTCTTTAATATTTTTCCATTGATTTAAAATGCTTTTTGGAATTCTAACCTTTACCTGGGGTAAGGCTTCACA---TACCAA---------TTGTATTTTAATT------ATTTCATTT-------TAGTGTCTTTACACTGATGGTCTTAAGCCAATCAGATATTCTGAT
i dasNov3.JH570393             C 0 I 57
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e macFas5.chr13                111080746   0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1129323.000000
s hg38.chr14_GL000009v2_random     22665 235 +    201709 GAGCAAGACTGTGTGTGTAGGTGTATATATAGATGTGTGTATGCGTGCGCTTGTGGCATCTTTGACTATTACAAATGACGAAAG----TAATGATTCATTTATGAC----TGGTAGACAC---------------------AGTCTTTTAA-------AATGGTGATTTTGAGCC-TTTTTGGTGTTAAAG----------TTTTTAAAA--CATGATTGCATagaggctaccaacatcataagt-----tggttg-tttttcatttcaatgcccttttgaaatctttaa
s panTro5.chr9                  41698645 235 + 116767853 GAGCAAGACtgtgtgtgtaggtgtatatataggtgcgtgtatgtgtgtgtttgtgGCATCTTTGACTATTACAAATGACGAAAG----TAATGATTCGTTTATGAC----TGGCAGACAC---------------------AGTCTTTTAA-------AATGGTGATTTTGAGCC-TTTTTGGTGTTAAAG----------TTTTTAAAA--CATAATTGCATagaagctaccaacatcataagt-----tggttg-tttttcatttcaatgccctttcaaaatctgtaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96043069 235 - 114479721 GAGCAAGACtgtgtgtgtaggtgtatatataggtgtgtgtatgtgtgtgtttgtgGCATCTTTGACTATTACAAATGACGAAAG----TAATGATTCGTTTATGAC----TGGCAGACAC---------------------AGTCTTTTAA-------AATGGTGATTTTGAGCC-TTTTTGGTGTTAAAG----------TTTTTAAAA--CATAATTGCATagaagctaccaacatcataagt-----tggttg-tttttcatttcaatgtcctttcaaaatctgtaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           79690 235 -    416926 GAGCAAGACtgtgtgtgtaggtgtatatatagctgtgtgtatgtgtgtgtttgtgGCATCTTTGACTATTAAAAATGAGGAAAG----TAATGATTCATTTATAAC----TGGTAGACAC---------------------AGTCTTTTAA-------AATGGTGATTTTGAGAC-TTTTTGGTGTTAAGG----------TTTTTAAAA--CATGATTGCATagaggctaccgacatcataagt-----tggttg-tttttcatttcaatgcccttttgaaatctttaa
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40816666 228 + 122973662 GAGC-AGACtgtgtgtgtatgtgtgtttataggtgtgtgtat--gtgtgtttgtTGCATCTTTGATTATTAAAAATGAGGAAAG----T----ACTCATTTATAAC----TGGTAGGCAC---------------------AATCTTTTAA-------AATGGTGATTTTGAGAC-TTTTTGATGTTAAGG----------TTTTTAAAA--CATGATTTCATAGAGGCTACTGACATCATAAAT-----TGGTTA-TTTTGCATTTCAATGCCCTTTTGAAATCCTTAG
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          351351 230 +    434444 GAGC-AGACtgtgtgtgtatgtgtatgtataggtgtgtgtatgtgtgtgtttgtgGCATCTTTGATTATTAAAAATTAGGGAAG----TATTTATTCATTTATAAC----TGGTAG-------------------------AGTCTTTTAA-------AAGGGTTATTTTGAGAC-TTTTTGGTGTTAAGG----------TTTTTGAAA--CATGATTGCATagaggctaccgacatcataaat-----cgattg-tttttcatttcaatgcccttttgaaatctttaa
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          398678 230 -    438202 GAGC-AGACtgtgtgtgtatgtgtatgtataggtgtgtgtatgtgtgtgtttgtgGCATCTTTGATTATTAAAAATTAGGGAAG----TATTTATTCATTTATAAC----TGGTAG-------------------------AGTCTTTTAA-------AAGGGTTATTTTGAGAC-TTTTTGGTGTTAAGG----------TTTTTGAAA--CATGATTGCATagaggctaccgacatcataaat-----cgattg-tttttcatttcagtgcccttttgaaatctttaa
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66448429 223 +  90373283 GAGC-AGACtgtgtgtgtatgtgtatgtataggtgtgtgtatgtgtgtgtttgtgGCGTCTTTGATTATTAAAAATTAAGGAAG--------TATACATTTATAAC----TGGTAG-------------------------AGTCTTTTAA-------AAGGGTTATTTTGAGAC-TTTTTGGTGTTAAGG----------TTTTTTAAA--CATGATTGCATagaggctaccgacatcataaat-----cgattg-tttttcatttcaatgcccttttgaaatctt---
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1498873 230 -   1547936 GAGC-AGACtgtgtgtgtatgtgtatgtataggtgtgtgtatgtgtgtgtttgtgGCATCTTTGATTATTAAAAATCAGGGAAG----TATTTATTCATTTATAAC----TGGTAG-------------------------AGTCTTTTAA-------AAGGGTTATTTTGAGAC-TTTTTGGTGTTAAGG----------TTTTTGAAA--CATGATTGCATagaggctaccggcatcataaat-----cgattg-tttttcatttcagtgcccttttgaaatctttaa
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           14049 233 +    168452 GAGC-AGACTGTGCATGTAGGTGTATGCATAGGTGTGTGTTCGTGTGAGTTTGTGGCATCTTTGATTATTAAAAATGAGGAAAG----TAATGATTCATTTATAAC----TGGTAG--AC---------------------AGTCTTTTAA-------AAGTGTTATTGTGAGACTTTTTTGGTGTTAAGG----------TTTTTAAAA--CGTGATTGCATAGAGGCTACCGACATCGTAAAT-----TGGTTG-TTTTTTATTTCAATGCCCTTTTGAAATCTTTGA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64638353 234 -  72162052 TAGC-AGACtgtgtgcacatgtgtatgtacgagtgtgtgtatgtgtgtgtTTAAGGCATCTTTGATTTTTAAAAATGAGAAAAG----TAATCATTCATTTATAAT----GGTTAGATCC---------------------AGTCTTTTAA-------AGTGGTGATTTCGAGAC-TTTTTGCTGTTAAAG----------TCTTTAAAA--AATGATTGCATagaggctacc-acatcatgaat-----tggttgtttttttatgtcaatgccctttcgaaatctttaa
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1055963 233 +   1314817 GAGC-AGACTGtgtgtacatgtgtatgtatgagcatgtgtatgtgtgtgtttaAGGCATCTTTGATTTTTAAAAATGAGAAAAG----TAATCATTCATTTATAAC----GGTTAGACCC---------------------AGTCTTTTAA-------AATGGTGATTTTGAGAC-TTTTTGCTGTTAAAG----------GTTTTAAAA--AATGATTGCATagaggctacc-acatcatgaat-----tggttg-ttttttatgtcaatgcccttttgaaatgtttaa
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19650172 261 -  27850971 tagc-agactgtgtgt-----tatatatgtggg-----gcat---------------atctttgattattaaaaatgtagaaaggaattaattatgccttaattactatttagtagacaTTCTGCAACTATTGACCTTAGGAGCCTTTTAGGAGTTGCAGTAGTGATTCTGCAAC--TATTGACCTTAGGAGCCttttattttattaaaatttattattGAATagaggtaaccaacactcccaattatcataggtg-tttattattcccaagcacttgtaacacatttta
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79100341 164 -  85426708 TAGC-AGACTCTGTGTGTGTGTGTGCATGCACGTgcaggtatgtatg--------gtgactttgattattaaaaatgtgggaaagaattagttgtatcttaatatt----tggtagacac---------------------aatc--ttaa-------aacagtaattctgaacc-tttttggcctagagt----------ccttttg----tactatttaa--------------------------------------------------------------------
i canFam3.chr2                 C 0 I 146
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e dasNov3.JH570393               1725050  57 -   2296528 I
e macFas5.chr13                111080746   0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=580226.000000
s hg38.chr14_GL000009v2_random     22900 106 +    201709 ttacat--tgtgatgctcagaaataatatgcagaattt----tttgtg---tcctaaaatggtatgtgagtg-gttatacacttta---tatacctttctgccactttctttggtgtgt
s panTro5.chr9                  41698880 106 + 116767853 ctatat--tgtaatgctcagaaataatatgcagaattt----tttgtg---tcctaaaatggtatgtgagtg-gttatacacttta---catacccttctgccactttctttggcatat
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96043304 106 - 114479721 ctatat--tgtaatgctcagaaataatatgcagaattt----tttgtg---tcctaaaatggtatgtgagtg-gttatacacttta---catacccttctgccactttctttggcgtat
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           79925 109 -    416926 ctatat--tgtgatgctcagaaataatatgcagaattttttatttgtg---tcct-aaatggtatgtgagtg-gttatacacttta---catacctttctgccactttctttggtgtat
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40816894 110 + 122973662 CTATAT--TGTGATGCTCAGAAATAGTATGCAGATTTTTTTATTTGAG---TCCTAAAATGGtatgcgagtg-gttatacacttta---tatacctttctgccactttctttggtgtac
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          351581 113 +    434444 ctatattgtgtgatgctcagaaataatatgcagaattttttatttgtt---tcctaaaatggtatgtgagtgagttatacacttta---catacctttctgccactttctttggtgtgt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          398908 111 -    438202 ctatat--tgtgatgctcagaaataatatgcagaattttttatttctg---tcctaaaatggtatgttagtgggttatacacttta---catacctttctgccactttctttggtgtat
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66448652 110 +  90373283 -catat--tgtgatgctcagaaataatatgcataattttttatttgtg---tcctaaaatggtatgtgagtgggttatacacttta---catacctttctgccactttctttggtgtat
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1499103 111 -   1547936 ctatat--tgtgatgctcagaaataatatgcagaattttttatttctg---tcctaaaatggtatgttagtgggttatacacttta---catacctttctgccactttctttggtgtat
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           14282 110 +    168452 CTATAC--TGTGATGCTCAGAAGTAATGTGCAGAGTGTTTTATTTGTG---TCCTAAAATGCTACATGAGTG-GTTCTACACTTTA---CATACCTTTCTGCCTCTTTCTTTGGTGTGT
i colAng1.NW_012121088v1       C 0 I 1001
s saiBol1.JH378105              64638587 109 -  72162052 ctacat--tgtgatgctcagaaataatatgcagaattt-ttacttgtg---tcctaaaatggtatgtgagtg-gttatacccttta---catacctttctgccactttctttggtgtac
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1056196 109 +   1314817 ctatat--tgtgatgctcagaaataatatgcagaattt-ttacttgtg---tcctaaaatggtatgtgagtg-gttatacccttta---catacctttctgccactttctttggtgtac
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19650433 109 -  27850971 gcatgt-atatg----tcataaataatatatagaattt----gttgtgacattctaaaattttatataaata-gttgtacactgtatattatatcattctgtaactattgtttatttgt
i otoGar3.GL873538             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e canFam3.chr2                  79100505 146 -  85426708 I
e dasNov3.JH570393               1725050  57 -   2296528 I
e macFas5.chr13                111080746   0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=319537.000000
s hg38.chr14_GL000009v2_random     23006 70 +    201709 tttgtattatattttccacttgtacccacattggtgtgattatccctggtttaattcattttacactgtt
s panTro5.chr9                  41698986 70 + 116767853 tttgtattatattttccacatgtatccacattgatatgattatctctggtttaattcattttacactgtt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96043410 70 - 114479721 tttgtattatattttccacatgtatccacattgatatgattatctctggtttaattcattttacactgtt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           80034 70 -    416926 tttgtattatattttccagatgtatccacattgatatgattatctctggtttaattcattttacactttt
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40817004 70 + 122973662 gttgtattatattttccagatgtatccacattgatatgattatctctggtttaattcattttacacttta
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          351694 68 +    434444 tttgtat--tattttccagatgcatccacattgacatgattatctctggtttaattcattttacactttt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          399019 70 -    438202 tttgtattatattttccagatgcatccacattgatatgattatctctggtttaattcattttacactttt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66448762 70 +  90373283 tttgtggtatattttccagatgcatccacactgatatgattatctctggtttaattcattttacactttt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1499214 70 -   1547936 tttgtattatattttccagatgcatccacattgatatgattatctctggtttaattcattttacactttt
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64638696 70 -  72162052 tttggattatattttctatatgtatccacattgatataattaggtcagttttaatttactttatactttt
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1056305 70 +   1314817 tttggattatattttctatatgtatccaccttgatatgattaggtcagttttaatttactttatactttt
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19650542 70 -  27850971 ttagcataatatttttgggatctatccatattgacacaagtagctctggtttattTTTTtttttattttt
i otoGar3.GL873538             C 0 I 278
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e canFam3.chr2                  79100505 146 -  85426708 I
e colAng1.NW_012121088v1           14392 1001 +    168452 I
e dasNov3.JH570393               1725050 57 -   2296528 I
e macFas5.chr13                111080746  0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=173104.000000
s hg38.chr14_GL000009v2_random     23076 40 +    201709 cattgtattccctcataccactttaccacatttagttaga
s panTro5.chr9                  41699056 40 + 116767853 cattgtattcccttataccactttaccacatttagttaga
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96043480 40 - 114479721 cattgtattcccttataccactttaccacatttagttaga
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           80104 40 -    416926 cattgtattcccttataccactttaccacatttagttaga
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40817074 40 + 122973662 cattgtattcccttagaccactttaccacatttagttaga
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          351762 40 +    434444 cattgtattccctttttccactttaccactttcagttaga
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          399089 40 -    438202 cattgtattcccttttaccactttaccactttcagttaga
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66448832 40 +  90373283 cattgtattcccttaaaccactttaccacatttagttaga
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1499284 40 -   1547936 cattgtattcccttaaaccactttaccacatttagttaga
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64638766 40 -  72162052 tactatgttcctttataccactctaccacatttaattaga
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1056375 40 +   1314817 tactgtgttcctttataccactctaccacatttaattaga
i cebCap1.NW_016107851v1       C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e canFam3.chr2                  79100505 146 -  85426708 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e colAng1.NW_012121088v1           14392 1001 +    168452 I
e dasNov3.JH570393               1725050 57 -   2296528 I
e macFas5.chr13                111080746  0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1219169.000000
s hg38.chr14_GL000009v2_random     23116 278 +    201709 ctctc-ctgttgctgATAAATG------------AAGAAATAAAAAGAAAAATAATGTCAGATTAAGAGG-GCTTTTCTTTAATTGGTTTGTATCTATTAGCGTTTACTATATGAGAGTTTAAACCTGAAAAGTTCAGAATACAAGCATACACCACCATATTTTATTAATACCCTTAGAACTATGACTCA-TGAGCCTTTAGCCTATGAAGTTAGCACAATTCATTTCTCTGAAGAAGAATGCTGGGCTGTTCTCAGAAAAGAAAACTGAAAATAGC-----------AAATGATATT--GTCTTA-------------
s panTro5.chr9                  41699096 278 + 116767853 ctctc-ctgttgctgATAAATG------------AAGAAAGAAAAATAAAAATAATGTCAGATTAAGAGG-GCTTTTCTTTAATCAGTTTGTATCTATTAGCATTTACTATATGAGAGTTTAAAGCTGAAAAGTTCAGAATACAAGCATGCACCACCATATTTTATAAATGCCCTTAGAACTATGACTTA-TGAGCCTTTAGCCTATGAAGTTAGGACAATTCATTTCTCTGAAGAAGAATGCTGTGCTGTTCTCAGAAAAGAAAACTGAAAGTAGC-----------AATTGATATT--GTCTTA-------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96043520 278 - 114479721 ctctc-ctgttgctgATAAATG------------AAGAAAGAAAAATAAAAATAATGTCAGATTAAGAGG-GCTTTTCTTTAATCAGTTTGTATCTATTAGCATTTACTATATGAGAGTTTAAAGCTGAAAAGTTCAGAATACAAGCATGCACCACCATATTTTATAAATGCCCTTAGAACTATGACTTA-TGAGCCTTTAGCCTATGAAGTTAGGACAATTCATTTCTCTGAAGAAGAATGCTGTGCTGTTCTCAGAAAAGAAAACTGAAAGTAGC-----------AATTGATATT--GTCTTA-------------
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           80144 282 -    416926 ctctc-ctgttgctgATAAATG--------AAGAAAGAAAGAAAAATAAAAATAATGTCAGATTAAGTGG-GCTTTTCTTTAATCAGTTTGTATCTATTAATATTTACTATATGAGAGTTTAAAGTTGAAAAGTTCAGAATACAAGCATGCACCACCATATTTTATAAATGCCCTTAGAACTGTGACTCA-TGAGCCTTTAGCCTATGAAGTTAGGACAATTCATTTCTCTGAAGAAGTTTGTTGTGCTGTTCTCAGAAAAGAAAACTGAAAATAGC-----------AAATGATATT--GTCTTA-------------
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40817114 286 + 122973662 ctctc-ctgttgctgATAAATG----ATGAATGAAAAAAATAAAAATAAAAATAATGTCAGATTAaaagg-gcttttgtttaatcagtttgtatctattagtatttactatatgagaatttaaagctaaaaagttCAGAATGCAAGCATGCATTAGCATATTTTATAAATGCCCTTAGAACTACAACCCA-TGAGCCTTTAGCCTATGAAGTTAGGACAATTCATTTCTCTGAAGAAGTTTGCTGTGCTGTTCTCAGAAAAGAAAACTGAAAAGAGC-----------AAATGACATT--GTCTTA-------------
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          351802 282 +    434444 ctctc-ctgttgctgATAAATG--------AAGAAAGAAAGAAAAATAAAAATAATGTCAGATTAaaaag-gcttttgtttaatgaggttgtacctattcatgtttactatacaagagtttaaagctgaaaagttCAGAGTGCAAGCATGCACCACTATAGTTTATAAATGTCCTTAGAACTATGATTCA-TGAGCCTTTAGCCTCTGAAGTTAGGACAATTCATTTCTCTGAAGAAGTTTGCTGTGCTGTTCTCAGAGAAGAAAACTGAAAAGAGC-----------AAATGGCATT--GTCTTA-------------
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          399129 280 -    438202 ctctc-ctgttgctgATAAATG--------AAGAAAGAAAGAAAAATAAAAATAATGTCAGATTAAAAAG-GCTTTTGTTTAATCAGTTTGTATCTATTAATGTTTACTATACGAGAGTTTAAAGCTGAAAAGTTCAGAGTGCAAGCATGCACCACCATAGTTTATAAATGCCCTTAGAAC--GGATTTA-TGAGCCTTTAGCCTCTGAAGTTAGGACAATTCCTTTCTCTGTAGAAGTTTGCTGTGCTGTTCTCAGAAAAGAAAACTGAAAAGAGC-----------AAATGGCATT--GTCTTA-------------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66448872 282 +  90373283 ctctc-ctgttgctgATAAATG--------AAGAAAGAAAGAAAAATAAAAATAATGTCAGATTAaaaag-gcttttgtttaatcagtttgtatctattaatgtttactatatgagagtttaaagctgaaaagttCAGAATGGAAGCATGCACCACCATAGTTTATAAACGCCCTTAGAACTGTGATTCA-TGAGCCTTTAGCCTGTGAAGTTAGGACAATTCATTTCTCTGAAGAAGTTTGCTGTGCTGTTCTCAGAAAAGAAAACTGAAAATAGC-----------AAACAGCATT--GTCTTA-------------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1499324 282 -   1547936 ctctc-ctgttgctgATCAATG--------AAGAAAGAAAGAAAAATAAAAATAATGTCAGATTAAAAAG-GCTTTTGTTTAATCAGTTTGTATCTATTAATGTTTACTATACGAGAGTTTAAAGCTGAAAAGTTCAGAGTGCAAGCATGCACCACCATAGTTTATAAATGTCCTTAGAACTATGATTCA-TGAGCCTTTAGCCTCTGAAGTTAGGACAATTCCTTTCTCTGTAGAAGTTTGCTGTGCTGTTCTCAGAAAAGAAAACTGAAAAGAGC-----------AAATGGCATT--GTCTTA-------------
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64638806 302 -  72162052 ctctc-ctgttgctgATAAATGAAGAAAGAAAGAAAAAAGGAAAAATAAAAATAATGTCAGGTTAAaaagagcttttgtttaatcggtttgtatctatgaatatttactatatgagagtttaaagctgaaaagttCAGAATGCAAGCATGTACCACCATATTTTGCAAATGCCTTTAGAACTATGACTCA-TGAGCCTTTAGCATATGCAGTTATGTCAATTCATTTCTCTGAAGAAGTTAATTGTACTGTTCTTGAAAAAGAAAACTGAAAATAGCATTGAAACTGAAAATGACATT--GTCTTA-------------
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1056415 297 +   1314817 ctctc-ctgttgctgATAAATG----AAGAAAGAAAAAAGGAAAAATAAAAATAATGTCAGATTAAaaagggcttttgttcaatcagtttgtatctgtgaatatttactatatgagagtttaaagctgaaaagttCGGAATGCAGGCATGCACCACCATATTTTGCAAATGCCTTTAGAACTATGATTCA-TGAGCCTTTAGCATATGCAGTTATGACAATTCATTTCCCTGAAGAAGTTAAGTGTACTGTTCTtgaaaaagaaaactgaaaatagcattgaaa-tgaaaatgaCATT--GTCTTA-------------
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79100651 285 -  85426708 ctctctctgtctgtcatgaata--------aataaaaatctttaaa-aaaattattgggaattccaaaga-atgtctgtttaagtggattgtatctgttgatatttacaatcttagaagttagaC-------ATTTAAAACACAGGCATGCACAATCTCATGTTGTTA--GCCATTAGAGCTGTGAtccactaatcatgcgagttgtgatgctatcacacattttatcttcagaaaactttactgtaa----ataagagaatgagagtgaaaatgtc-----------aaataacatttggtattattatgaagatagt
i canFam3.chr2                 I 146 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e colAng1.NW_012121088v1           14392 1001 +    168452 I
e dasNov3.JH570393               1725050  57 -   2296528 I
e macFas5.chr13                111080746   0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1003014.000000
s hg38.chr14_GL000009v2_random     23394 204 +    201709 TTTTACCTCTTGGACATC----CTTGAATGAAAC-TGCTACTAAAGGGATACTCGGATCAAAATTCAGATCTAA-TGTTTTGAACAGTA-----TAGTTTGTGAATGTCCAGT-GATCAT-GAGCCCTTGATGGGGAAATGACCCTTCGAGTTTCACTTTTGCATT-C-----TCTTTTCGTTGACTTGTCTT-GAAAGCTTAAATTCAACTATTTTATTTTTA
s panTro5.chr9                  41699374 209 + 116767853 TTTGACCTCTTGGACATC----CTTGAATGAAAC-TGCAACTCCATGGTTACTCGGATCAAAATTCAGAACTAA-TGTTTTGAACAATA-----TAGTTTGTGAATGTCCAGT-GATCAT-GAGCCCTTGATGGGGAAATGACATTTCAAGTTTCACTTTTGCCTT-TTTTGATCTTTTCCTTGACTTGTCTT-AAAAGCTTAAATTCAACTGTTTTATTTTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96043798 209 - 114479721 TTTGACCTCTTGGACATC----CTTGAATGAAAC-TGCTACTCCATGGTTACTCGGATCAAAATTCAGAACTAA-TGTTTTGAACAGCA-----TAGTTTGTGAATGTCCAGT-GATCAT-GAGCCCTTGATGGGGAAATGACTTTTCGAGTTTCACTTTTGCATT-TTTTGCTCTTTTCCTTGACTTGTCTT-GAAAGCTTAAATTCAACTGTTTTATTTTTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           80426 210 -    416926 TTTGACCTCTTGGACATC----TTTGAATGAAAC-TGCAACTCCAGGGATACTCAGATCAAAATTCAGAACTAA-TGTTTTGAACAATA-----TAGTTTGTGAATGTCCAGTGGATCAT-GAGCCCTTGATGGGAAAATGACCTTTCAAGTTTCACTTTTGCATT-TTTTGCTCTTTTCCTTGACTTGTCTT-AAAAGCTTAAATTCAACCGTTTTATTTTTA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40817400 214 + 122973662 TTTGACTTCTTGGACATC----CTTAAATGAAAC-TGAAACTCTGGGGATACTCAGATCAAAATTCTGAACTAA-TGTTTTGAACAGTATATATTAGTTTGTGAATGTCCAGT-GATCGT-GAGGCCTTGTTGGTGAAATGAACTTTCAAGTTTCACTTTTGTGTT-TTTTGCTCTTTTCCTTGACTTGTCTT-AAAAGCTTAAATTCAACAGTTTTATTTATA
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          352084 214 +    434444 TTTGACCTCTTGGACATC----CTTGAATGAAAC-CGAAAGTCCGGGGATACTCAGATCAAAATTCAGAACTAA-TGTTTTGAACAATATATA-TAGTTTGTGAATGTCTAGT-GATCAT-GAGCCCTTGATGGTGAAATGAACTTTCAAGTTTCACTTTTACATTTTTTTGCTCTTTTCCTTGACTTGTCTT-AAAAGCTTAAATTCAACAGTTTTATTTATA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          399409 214 -    438202 TTTGACTTCTTGGACATC----CTTGAATGAAAC-TGAAACTCCGGGAATACTCAGATCAAAATTCAGAACTAA-TGTTTTGAACAATATATA-TAGTATGTGAATGTCTAGT-CATCAT-GAGCCCTTGATGGTGAAATGAACTTTCAAGTTTCACTTTTACATTATTTTGCTCTTTTCCTTGACTTGCCTT-AAAAGCTTAGATTCAACAGTTTTATTTATA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66449154 214 +  90373283 TTTGACCTCTTGGACATC----CTTGAATGAAAC-TGAAACTCCGGGGATACTCAGATCAAAATTCAGAACTAA-TGTTTTGAACAATATATA-TAGTTTGTGAATGTCTAGT-GATCAT-GAGCCCTTGATGGTGAAATGAACTTTCAAGTTTCACTTTTACATTTTTTTGCTCTTTTCCTTGACTTGTCTT-AAACGCTTAAATTCAATAGTTTTATTTATA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1499606 214 -   1547936 TTTGACTTCTTGGACATC----CTTGAATGAAAC-CGAAACTCCGGGGATACTCAGATCAAAATTCAGAACTAA-TGTTTTGAACAATATATA-TAGTTTGTGAATGTCTAGT-CATCAT-GAGCCCTTGATGGTGAAATGAACTTTCAAGTTTCACTTTTACATTATTTTGCTCTTTTCCTTGACTTGCCTT-AAAAGCTTAGATTCAACAGTTTTATTTATA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64639108 214 -  72162052 TTTGACCTCTTGGACATC----CTTGAATGAAAC-TGGAGCTCCAGGGATACTCAGATCAAAATTCAGAACCAA-TGTTGTGAACAATATATA-TAGTTTGTAAATGTCTGGT-GATCAT-GAGTCCTTGATGATGAAATGGCCTTTCAAGTTTCACTTTTGTGTT-TTTTGTTCTTTTCTTTGGCTTGTTTTAAAAAGCTTAAATTCAACAGTTTTATTTATA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1056712 214 +   1314817 TTTGACCTCTTGGACATC----CTTGAATGAAAC-TGGAACTCCAGGGATACTCAGATCAGAGTTCAGAACCAA-TGTTGTGAACAATATATA-TAGTTTGTAAATGTCTAGT-GATCAT-GAGCCCTTGATGATGAAATGGCCTTTTGAGTTTCACTTTTGTGTT-TTTTGCTCTTTTCCTTGACTTGTTTTAAAAAGCATAAATTCAACAGTTTTATTTATA
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79100936 209 -  85426708 tttgacctcttggattttgtgaattgatggatct-tgggactttggggattttcagatgacatgggagaactgA----TTTAAACCATGTACA-GGGTTCATGGACCTAAAAT-GATAAA-GGGGTCTTTGTGATGAAATGGGCATTAAAGTTTCATTTCTGCATT-TCTTGCTTTTTTCT-----TTCCCTT-AAGAGGTTTAATTGTGTtttttttttttta
i canFam3.chr2                 C 0 I 334
s dasNov3.JH570393               1725107 214 -   2296528 tttgacatcttggac-cc----cttgaatggctcttgggact--agggattctcagataacactttagaaccCACTGTACTAAACCATAGATA-GTATTCATGGATATGAAAT-GATAAAGGGGCCCTTGGTAACAAAGTGGCTTTTACAGTTTTATTTTTACATT-TCCTGCTTTTTTCTTTCACTCATCTTTAGAAGTTTAAATGTGACAATTGGGTTTTTA
i dasNov3.JH570393             I 57 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e colAng1.NW_012121088v1           14392 1001 +    168452 I
e macFas5.chr13                111080746   0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=432315.000000
s hg38.chr14_GL000009v2_random     23598 108 +    201709 CAGAAACCAGGAATATAACTTTTAAAATATATGTCTGTCCTGTCTCACGGTGTTGTGTACTCTTCAGATCTTGTATGAACATAGAC---------TTATATGGGAAAAATTAGG----TTG
s panTro5.chr9                  41699583 112 + 116767853 CAGAAACCAGGAATATAACTTTTAAAATATATGTCTGTCCTGTCTCACGGTGTTGTGTACTCTTCAGATCTTGTGTGAACTTAGAC---------TTATATGGGAACAATTACGttttttg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96044007 111 - 114479721 CAGAAACCAGGAATATAACTTTTAAAATATATGTCTGTCCTGTCTCATGGTGTTGTGTACTCTTCAGATCTTGTGTGAACATAGAC---------TTATATGGGAAC-ATTAAGttttttg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           80636 112 -    416926 CAGAAACCAGGAATATAACTTTTAAAATTTATGTCTGTCCTGTCTCACGGTGTTGTGTACTCTTCAGATCTTGTGTGAACATAGAC---------TTATGTGGGAACAATTAGGttttttg
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40817614 111 + 122973662 CAGAAACCAGGAATATGACTTGTTAAATATATTTCTTTCCTGTCTCACGGCACTGTGTATGCTTCAGATCTAGTGTGAACATAGAC---TTATTTTTATATAGGAACAATTAGG-------
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          352298 116 +    434444 CAGAAACCGGGAATAGAACTTGTTAAATATATTTCTGTCCTGTCTCACGGCATTGTGTATGCTTCAGATCTAGTGTGAAC-TAGAC---TTCTTTTTGTATGGGAACAATTAGG-TTTTTG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          399623 116 -    438202 CAGAAACCGGGAATAGAACTTGTTAAATACATTTCTGTCCTGTCTCACGGCATTGTGTATGCTTCAGATCTAGTGTGAAC-TAGAC---CTATTTTTATATGGGAACAATTAGG-tttttg
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66449368 116 +  90373283 CAGAAACCGGGAATAGAACTTGTTAAATATATTTCTGTCCTGTCTCACGGCATTGGGTATGCTTCAGATCTAGTGTGAAC-TAGAC---TTATTTTTATATGGGAACAATTAGG-tttttg
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1499820 116 -   1547936 CAGAAACCGGGAATAGAACTTGTTAAATACATTTCTGTCCTGTCTCACGGCATTGTGTATGCTTCAGATCTAGTGTGAAC-TAGAC---CTATTTTTATATGGGAACAATTAGG-tttttg
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64639322 118 -  72162052 CAGAAACCAGCAACAGAACTTTTGAAATATATTTCTGTCCTATCTCATGGGATTGTATACTCTTCAGATCTAGTGTGGACCTAGAC---TTATTTTTACCTGGGGACAATTAGGTTTTTGG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1056926 118 +   1314817 CAGAAACCAGCAACTTAACTTTTAAAATATATTTCTGTCCTATCTCATGGTATTGGGTACTCTTCAGATCTAGGGTGGACCCAGAC---TTATTTTTACACGGGAACAATTAGGTTTTTCG
i cebCap1.NW_016107851v1       C 0 C 0
s dasNov3.JH570393               1725321 112 -   2296528 ----AAAAAGGAAAAT-ATTTTTGTTATACATTCATTTCCTATATTATGATACTCTGTACTCTGTAGATCTTGCCTGCACCTAGACATCCTGTTTTTACGTGAAAATAATTAGG-TAA---
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e canFam3.chr2                  79101145 334 -  85426708 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e colAng1.NW_012121088v1           14392 1001 +    168452 I
e macFas5.chr13                111080746   0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1252506.000000
s hg38.chr14_GL000009v2_random     23706 312 +    201709 tt--------tgtttatttgtgtttttgagacagagtcttgctctgtcaccaaggctggagtgcagtggctcagtcttggctcattaccacctctgcctctcgggttcaagcaattctcctgcctcagcccctcgagtagctgatactacatgcacgtgctaccataccctgctaatttttctatttttagtagagatggggtttcaccaggttggccaggctgctcttgaactcctgacctcaggtgatctgcccacctcggcttgccaatgtgctgggattacaggtgggagtcattgtgccA-GCTACAAATAAGA-TT
s panTro5.chr9                  41699695 312 + 116767853 ct--------tgtttgtttgtgtttttgagacagagtcttgctctgtcaccaaggctggagtgcattggctcagtcttggctcattaccacctctgcctctcgggttcaagcaattctcctgcctcagcccctcgagtagcttatactacatgcacgtgctaccatactctgttaatttttctatttttagtagagatggggtttcaccatgttggccaggctgctctcgaactcctgaccttaggtgatctgcccaccttggcttgccaatgtgctgggattacaggtgaaagccactgtgccA-GCTACAAATAAGA-TT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96044118 312 - 114479721 tt--------tgtttgtttgtgtttttgagacagagtcttgctctgtcaccaaggctggagtgcattggctcagtcttggctcattaccacctctgcctctcgggttcaagcaattctcctgactcagcccctcgagtagcttatactacatgcacgtgctaccatactctgttaatttttctatttttagtagagatggggtttcaccatgttggccaggctgctctcgaactcctgacctcaggtgatctgcccaccttggcttgccaatgtgctgggattacaggtgaaagccactgtgccA-GCTACAAATAAGA-TT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           80748 312 -    416926 tt--------tgtttgtttgtgtttttgagacagagtcttgctctgtcaccaaggctggagtgcagtggctcagtcttgactcattaccacctctgcctctcaggttcaagcaattctcctgcctcagcccctcgagtagctgatactacctgcatgtgctaccataccctgctaaattctctatttttagtagagatggggtttcaccatgttggccaggctgctctcaaactcctgatctcaggtgatctgcctgcctcagcttgccagtatgctgggattacaggcaggagccactgtgcca-ggTACAAATAAGA-TT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40817725 311 + 122973662 -t--------tttttgtttgtgtttttgagacagagtcttgctctgtcacccaggctggagtgcagtggctcagtcttggctcatttcaacctctgcctctcgagttcaagcaattctcctgcctcagctccttgagtagctgatactacatgcatgtgctaccacaccctgctaatttttctatttttagtagagatggggtttcaccatgttggccaggctgctctcctactcctgacctcaggtgatctgcccacctcagctttccaatgtcctgggattacaggtgggagccactgtgccA-GCTACAAATAAGA-TT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          352414 316 +    434444 TG---TGGtttgtttgtttgtgtttttgagac--agtcttgctctgtcacccaggctggagtgcagtggctcagtcttgcctcattacaacctctgcctctcgagttcaagcaattctcctgcctcagccccctgagtagctgatactacatgtacatgctaccacactctgctaatttttctctttttattagagagaggatttcaccatgttggccagggtgctgtccaacttctgacctcaggtgatctgcccacctcagctttccaatgtgctgggattataggtgggagccactgtgcTG-GCTACAGATAAGATTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          399739 310 -    438202 tg--------tgtttatttgtgtttttgagac--agtcttgctctatcacccaggctggagtgcagtggctcagtcttgcctcattacaacctctgcctcttgagttcaagcaattctcctgcctcagccccctgagtagctgatactacatgtacatgctacaacactctgctaatttttctatttttattagagagaggatttcaccatgttggccagggtgctgtccaactcctgacctcaggtgatctgcccacctcagctttccaatgtgctgggattataggcgggatccactgtgTTG-GCTACAGATAAGA-TT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66449484 315 +  90373283 tg----tgtttgtttgtttgtgtttttgagac--agtcttgctctgtcacccaggctggagtgcagtggctcagtcttgcctcattacaacttctgcctctcgagttcaagcaattctcctgcctcagccccttgagtagctgatactacatgtatatgctaccacactctgctaatttttctatttttattagagaggggatttcaccatgttggccagggtgctctccaatgcctgacctcaggtgatctgcccacctcagctttccaatgtgctgggattacaggtgggagccactgtgccG-GCTACAGATAAGATTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1499936 311 -   1547936 tg--------tgtttatttgtgtttttgagac--agtcttgctctatcacccaggctggagtgcagtggctcagtcttgcctcattacaacctctgcctcttgagttcaagcaattctcctgcctcagccccctgagtagctgatactacatgtacatgctacaacactctgctaatttttctatttttattagagagaggatttcaccatgttggccagggtgctgtccaactcctgacctcaggtgacctgcccacctcagctttccaatgtgctgggattacaggtgggagccactgtgccg-gcTATAGATAAGATTT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64639440 302 -  72162052 TTTGTTCAtttgtttgtttgtgttttcgagacagacttttgctctgtatcccaggctggagggcagtggctcagtcttggctcactgcaatctctgcctctcggattcaagcaattcttct-------------cagtagctgatacttcaggcacatgcctccacaccccgctaatttttctatttgtagtagagat-gggtttcactatgttggccaggctggtctctacctcctggcctcaggtgacctgctcacctcagctttccaatgtgctgggattaaaggtgggaaccactgtgccctgcT-----TAAGT-TT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1057044 308 +   1314817 TTTGTTCAtttgtttgtttgtgtttttgagacatagttttgctctgtcacccatgctggagggcagtggctcagtctgggctcactgcaacctctgcctctcggattcaagcaattcttct-------------gagtagctgatactacaggcatgtgcctccacacccagctaatttttctgtttgtagtagagatggggtttcactatgttggccaggctggtctctaactcctggcctcaggtgacctgctcatctcagctttccaatgtgctgggattgaaggtgggagccacagtgccctgcTGCTAATAAGT-TT
i cebCap1.NW_016107851v1       C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e canFam3.chr2                  79101145 334 -  85426708 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e colAng1.NW_012121088v1           14392 1001 +    168452 I
e dasNov3.JH570393               1725433   0 -   2296528 C
e macFas5.chr13                111080746   0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=15763.000000
s hg38.chr14_GL000009v2_random     24018 3 +    201709 TTT
s panTro5.chr9                  41700007 3 + 116767853 TTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96044430 3 - 114479721 TTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           81060 3 -    416926 TTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40818036 3 + 122973662 TTT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          352730 3 +    434444 TTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          400049 3 -    438202 GTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66449799 3 +  90373283 TTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1500247 3 -   1547936 TTT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64639742 3 -  72162052 TTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1057352 3 +   1314817 TTT
i cebCap1.NW_016107851v1       C 0 C 0
s dasNov3.JH570393               1725433 3 -   2296528 TTT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e canFam3.chr2                  79101145 334 -  85426708 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e colAng1.NW_012121088v1           14392 1001 +    168452 I
e macFas5.chr13                111080746 0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=87442.000000
s hg38.chr14_GL000009v2_random     24021 15 +    201709 AAGGCTATTATACTT
s panTro5.chr9                  41700010 15 + 116767853 AAGGCTATTATATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96044433 15 - 114479721 AAGGCTATTATATTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           81063 15 -    416926 AAGGCTATTATATTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40818039 15 + 122973662 AAGGCTATTATATTT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          352733 15 +    434444 AAGGCTATTATATTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          400052 15 -    438202 AAGGCTATTGTATTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66449802 15 +  90373283 AAGGCTATTATATTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1500250 15 -   1547936 AAGGCTATTATATTT
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64639745 15 -  72162052 AAGGCTGTTATATTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1057355 15 +   1314817 AAGGCTACTATATTT
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79101479 15 -  85426708 AAGACTTTCATTTCT
i canFam3.chr2                 I 334 I 2
s dasNov3.JH570393               1725436 15 -   2296528 AAGGCTATCATTCCT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e colAng1.NW_012121088v1           14392 1001 +    168452 I
e macFas5.chr13                111080746  0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=83152.000000
s hg38.chr14_GL000009v2_random     24036 18 +    201709 TATACAATTATTTGGTCT--
s panTro5.chr9                  41700025 18 + 116767853 TATACAATTCTTTGGTCT--
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96044448 18 - 114479721 TATACAATTCTTTGGTCT--
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           81078 18 -    416926 TATACAATTCTTTGGTCT--
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40818054 18 + 122973662 TATACAAATCATTGGTCT--
i nomLeu3.chr1a                C 0 I 16
s macFas5.chr13                111080746 18 - 111193037 TATACAAATCTTTGGTCT--
i macFas5.chr13                C 0 I 16
s macNem1.NW_012012823v1          352748 18 +    434444 TATGCAAATCTTTGGTCT--
i macNem1.NW_012012823v1       C 0 I 16
s cerAty1.NW_012002921v1          400067 18 -    438202 TAGATAAATCTTTGGTCT--
i cerAty1.NW_012002921v1       C 0 I 16
s chlSab2.chr2                  66449817 18 +  90373283 TATGCAAATCTTTGGTCT--
i chlSab2.chr2                 C 0 I 16
s manLeu1.NW_012105442v1         1500265 18 -   1547936 TATGCAAATCTTTGGTCT--
i manLeu1.NW_012105442v1       C 0 I 16
s saiBol1.JH378105              64639760 18 -  72162052 TATACCAATTTTTGATCT--
i saiBol1.JH378105             C 0 I 16
s cebCap1.NW_016107851v1         1057370 18 +   1314817 TATACCAATTTTTGGTCT--
i cebCap1.NW_016107851v1       C 0 I 16
s canFam3.chr2                  79101496 17 -  85426708 TATAAATATATTTGTCC---
i canFam3.chr2                 I 2 I 3
s dasNov3.JH570393               1725451 20 -   2296528 CATATAAATTTATCATGTCT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e colAng1.NW_012121088v1           14392 1001 +    168452 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=651007.000000
s hg38.chr14_GL000009v2_random     24054 109 +    201709 --------------ATGTGAATTCTGAAGGTATTCATGCATTGAGGGAAGATTATCTCAGTTTAATGAAAGCATTTTTTAATTTAAC---GTATATTCATTAAAATTTTTTTTGAAGT-TTTTGTCT
s panTro5.chr9                  41700043 109 + 116767853 --------------ATGTGAATTCTGAAGGTATTCATGAATTGAGGGAATATTATCTCAGTTTAATGAAAGCAGTTTTTAATTTAAC---GTATATTCATTAAAAATGTTTTTGAAGT-TTTTGTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96044466 109 - 114479721 --------------ATGTGAATTCTGAAGGTATTCATGAATTGAGGGAAGATTATCTCAGTTTAATGAAAGCAGTTTTTAATTTAAC---GTATATTCATTAAAAATTTTTTTGAAGT-TTTTGTCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           81096 103 -    416926 --------------ATGTGAATTCTGAAGGTATTCATGCATTGAGGGAAGATCATCTCAGTTTAATGAAAGCAGTTTTTAAT--------GTATATTCATTAAAA-TTTTTTTGAAGT-TTTTGTCT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40818088 109 + 122973662 --------------ATGTGAATTCTGAAGGTATTCATGCATGGAGGGAAGATCACCTCAGTTTAATGAAAGCAGTTTTTAATTTAAC---GTATATTCATTAAAAATTTTTTTGAAGT-TTTTGTCT
i nomLeu3.chr1a                I 16 C 0
s macFas5.chr13                111080780 109 - 111193037 --------------ATGTGAATTCTGAAGGTATTCGTGCATTGAGGGAAGATCATCTCAGTTTAATGAAGGCAGTTTTTAATTTAAT---GTATATTCATTAAATTGCTTTTTGAACA-TTTTGTCT
i macFas5.chr13                I 16 C 0
s macNem1.NW_012012823v1          352782  95 +    434444 --------------ATGTGAATTCTGAAGGTATTCATGCGTTGAGGGAAG--------------ATGAAAGCAGTTTTTAATTTAAT---GTATATTCATTGAAATGTTTTTTGAAGT-TTTTGTCT
i macNem1.NW_012012823v1       I 16 C 0
s cerAty1.NW_012002921v1          400101  95 -    438202 --------------ATATGAATTCTGAAGGTATTCATGTGTTGAGGGAAG--------------ATGAAAGCAGTTTTTAATTTAAT---ATATATTCATTGAAATGTTTTTTGAAGT-TTTTGTCT
i cerAty1.NW_012002921v1       I 16 C 0
s chlSab2.chr2                  66449851  95 +  90373283 --------------ATATGAATTCTGAAGGTCTTCATGCGTTGAGGGAAG--------------ATGAAAGCAGTTTTTAATTTAAT---GTATATTCATTGAAATGTTTTTTGAAGT-TTTTGTCT
i chlSab2.chr2                 I 16 C 0
s manLeu1.NW_012105442v1         1500299  95 -   1547936 --------------ATATGAATTCTGAAGGTATTCATGTGTTGAGGGAAG--------------ATGAAAGCAGTTTTTAATTTAAT---ATATATTCATTGAAATGTTTTTTGAAGT-TTTTGTCT
i manLeu1.NW_012105442v1       I 16 C 0
s colAng1.NW_012121088v1           15393 108 +    168452 --------------ATGTGAATTCTGAAGGTATTCATGCATTGAGGGAAGATCATCTTGGTTAAATGAAGGCAATTTTAAATTTAAT---GTATATTCATTATAAT-TTTTTTGAAGA-TTTTGTGT
i colAng1.NW_012121088v1       I 1001 C 0
s saiBol1.JH378105              64639794 108 -  72162052 --------------ATGTGAATTCTGAAGGTATTCATTCATTGAGGGAAGATCATCTCTGTTTAATGAAAGCAG-ttttaatttaac---atatattcattaaaattttttttgaaat-ttttGTCT
i saiBol1.JH378105             I 16 C 0
s cebCap1.NW_016107851v1         1057404 109 +   1314817 --------------ATGTGAATTCTGAAGGTATTCATTCATTGAGGGAAGATCATCTCAGTTTAATGAAAGCAGTTTTTAATTTAAC---ATATATTCATTAAATTTTTTTTTGAAGT-TTTTGTCT
i cebCap1.NW_016107851v1       I 16 C 0
s canFam3.chr2                  79101516  95 -  85426708 --------------AATTAAATTCTGAGAATTTTGGTTCATCGAGGAAAGACCATCTCATTATAATTAAAGTAGTACCT----------------TTCATTAAAA-GTTTTTTAAAAC-TCATGTCT
i canFam3.chr2                 I 3 I 364
s dasNov3.JH570393               1725471 126 -   2296528 AGCCAAGGCTTAAAAAATGAATTCTGACAATATTAGTGTATTCAGGAAAGACCATCTCATCAT-ATTAAAGTTGTTTTTAATTTAAAGTGGTACATTCATTAAACATTTTTTAAAAACGTCATGTTT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=62998.000000
s hg38.chr14_GL000009v2_random     24163 8 +    201709 CTAGTACA
s panTro5.chr9                  41700152 8 + 116767853 CTAGTACA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96044575 8 - 114479721 CTAGTACA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           81199 8 -    416926 CTAGTACA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40818197 8 + 122973662 CTAGTACA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111080889 8 - 111193037 CTAGTACA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          352877 8 +    434444 CTAGTACA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          400196 8 -    438202 CTAGTACA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66449946 8 +  90373283 CTAGTACA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1500394 8 -   1547936 CTAGTACA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           15501 8 +    168452 GTAGTACA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64639902 8 -  72162052 CTAGTACA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1057513 8 +   1314817 CTAGTACA
i cebCap1.NW_016107851v1       C 0 C 0
s dasNov3.JH570393               1725597 8 -   2296528 CTAGAACA
i dasNov3.JH570393             C 0 I 467
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e canFam3.chr2                  79101611 364 -  85426708 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=85817.000000
s hg38.chr14_GL000009v2_random     24171 15 +    201709 CAGAAACACACAATA
s panTro5.chr9                  41700160 15 + 116767853 CAGAAACACACAATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96044583 15 - 114479721 CAGAAACACACAATA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           81207 15 -    416926 CAGAAACACACAATA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40818205 15 + 122973662 CAGAAACACACAATA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111080897 15 - 111193037 CAGAAACACACTATA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          352885 15 +    434444 CAGAAACACAAAATA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          400204 15 -    438202 CAGAAACACAAAATA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66449954 15 +  90373283 CAGAAACACAAAATA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1500402 15 -   1547936 CAGAAACGCAAAATA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           15509 15 +    168452 CAGAAACACACAATA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64639910 13 -  72162052 CAGAAACACA--ATA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1057521 13 +   1314817 CAGAAACACA--ATA
i cebCap1.NW_016107851v1       C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e canFam3.chr2                  79101611 364 -  85426708 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e dasNov3.JH570393               1725605 467 -   2296528 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=384382.000000
s hg38.chr14_GL000009v2_random     24186 65 +    201709 ATGTCATGGGTATTTGACCTTAATGTGTTTATGCACAAACT----TAGTTATTGAAATATTTTCTTATA
s panTro5.chr9                  41700175 65 + 116767853 ATGTCATGGGTATTTTACCTTAATGTGTTTATGCACAAACT----TAGTTATTCAAATATTTTCTTATC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96044598 65 - 114479721 ATGTCATGGGTATTTTACCTTAATGTGTTTATGCACAAACT----TAGTTATTCAAATATTTTCTTATC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           81222 65 -    416926 TTGTCATGGGTATTTGACCTTAATGTGTTTATGCACAAACT----TAGTTATTCAAATATTTTCTTATC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40818220 65 + 122973662 ATGTCATGGGTATTTAACCTTAATGTGTTTATGCACAAAGT----TAGTTATTCAAATATTTTCTTATC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111080912 65 - 111193037 ATGTCATGGGTATTTGACCTTAATGTGTTCATGCACAAACT----TAGTTATTCAAATATTTTCTTATC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          352900 61 +    434444 ATGTCATGGGTATTTCATCTTAATGTGTTTATGCACAA--------AGTTATTCAAATATTTTCTTATC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          400219 65 -    438202 ATGTCTTGGGTATTTAATCTTAATGTGTTTATGCACAAAGT----TAGTTATTCAAATATTTTCTTATC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66449969 65 +  90373283 ATGTCATGGGTATTTAATCTTAATGTGTTTATGCGCAAAGT----TAGTTATTCAAATATTTTCTTATC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1500417 65 -   1547936 ATGTCTTGGGTATTTAATCTTAATGTGTTTATGCACAAAGT----TAGTTATTCAAATATTTTCTTATC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           15524 48 +    168452 ATGTC-----------------ATGTGTTTATTCTCAAACT----TAGTTATTCAAATATTTTCTTATC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64639923 65 -  72162052 ATATCGTAGTTATTTAAACTTAATGTATTCATGCACAAACT----TAGTTATTCAGATATTTTCTTATT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1057534 65 +   1314817 ATGTCATGGCTATTTAAACTTAATGTATTCATGCACAAACT----TAGTTATTCAGATATTTTCTTATC
i cebCap1.NW_016107851v1       C 0 C 0
s dasNov3.JH570393               1726072 68 -   2296528 ATGTTGTATATTTTTAAACTTAAAATGTTTAGATAGAAATTTTGCTAGTAACACAAAAATTTTA-TATC
i dasNov3.JH570393             I 467 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e canFam3.chr2                  79101611 364 -  85426708 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=89321.000000
s hg38.chr14_GL000009v2_random     24251 12 +    201709 CCTGAAGAATCT
s panTro5.chr9                  41700240 12 + 116767853 CCTGGAGAATCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96044663 12 - 114479721 CCTGGAGAATCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           81287 12 -    416926 CCTGAAGAATCC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40818285 12 + 122973662 TCTGAAGAATCT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111080977 12 - 111193037 CCTCAAGAATCT
i macFas5.chr13                C 0 I 17496
s macNem1.NW_012012823v1          352961 12 +    434444 TCTGAAGAATCT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          400284 12 -    438202 TCTGAAGAATCT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66450034 12 +  90373283 TCTGAAGAATCT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1500482 12 -   1547936 TCTGAAGAATCT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           15572 12 +    168452 ACTGAAGAATCT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64639988 12 -  72162052 CCTGTAGAATCT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1057599 12 +   1314817 CCTGTAGAATCT
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79101975 12 -  85426708 CTTGAAGAATCC
i canFam3.chr2                 I 364 C 0
s dasNov3.JH570393               1726140 12 -   2296528 CCTAAATAATCT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1537627.000000
s hg38.chr14_GL000009v2_random     24263 281 +    201709 TAATTACTAATAAACAAATTTCTCATGGAAAACAACATATATAACAGAGATGGTTGAGTGATTGAAAGTAAACTGTAGTAAATACCAGAAGCTTAGAACA--------------AGTTAAGTAAACTTTTCTGAGTTAATAGCAATTACAAGACTTTTAAAATACATTAGACCACGGGGGAGT-------AGTGCATTTGTGGGGTAGAGGACAACATGGTACTGCTTCAGTGAAGAAAGAACTTTTACACCTTATTACAATTTGTATTATTATTTACATTCTAATAAATAAAAACTTTATT
s panTro5.chr9                  41700252 281 + 116767853 TAATTACTAATAAAAAAATTTCTCATGGAAAACAACATATATAATAGAGATGGTTGAGTGATAGAAAGTAAATTGTAGTAGATAACAGAAGCTTAGAACA--------------AGTTAAGTAAACTTGTCTGAGTTAATGGCAATTACAGGACTTTTAAAATATATTAGACTATGTGAGAGT-------AGTGCATTTGTGGGGTAGAGGACAACATGGTACTGCTTCAGTGAAGAAATAACTTTTACACCTTATTACAATTTGTATTATTATTTACATTCTAATAAATAAAAACTTTATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96044675 281 - 114479721 TAATTACTAATAAAAAAATTTCTCATGGAAAACAACATATATAATAGAGATGGTTGAGTGATAGAAAGTAAATTGTAGTAGATAACAGAAGCTTAGAACA--------------AGTTAAGTAAACTTGTCTGAGTTAATGGCAATTACAGGACTTTTAAAATATATTAGACTATGTGAGAGT-------AGTGCATTTGTGGGGTAGAGGACAACATGGTACTGCTTCAGTGAAGAAATAACTTTAACACCTTATTACAATTTGTATTATTATTTACATTCTAATAAATAAAAACTTTATT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           81299 275 -    416926 TAATTATTAATAAAAAAATTTCTCATGGAAAACAACATATATAATAGAGATTGTTGAGTGAT--AAAGTAAATTGTAGTAAATAACAGAAGCTTAGAACA--------------AGTTAAGTAAACTTGTCTGAGTTAATAGCAATTACAGGACTTTTAAAATACATTAGACCATGAGGGAGT-------AGTGTGTTTGTGGGGTAGAGGACATCATGGTCCTGCTTCAGTGAAGAAAGAACTTTTACACCTTATTACAATTTGTATTACTATTTACATTCT----AATAAAAACTTTATT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40818297 292 + 122973662 TAATTATTAATA---AAATTTCTCATGGAAAACAAAATATATAATAGACATCGTTAATTGATTCAAAGTAAATTGTAGTAAATAACAAAAGCTTAGAACAAAGTGAGAGATTCTAGTTAAGTAAACTTGTCTGAGTTAATAGCAATTACAGGACTTGTAAACTACATTAGACCGTGAAGGAGT-------AGTGTGTTTGTGGGGTAGAGGACAACATGGTACTTCTTCAGTGAAGAAGGAATTTTTATACCTTATTACAATTTGTATTACTATTTACATTCTAATAAATAAAAACTTTATT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          352973 277 +    434444 TAATTATTAAAA----AATTTCTCGTGGAAAACAAAATATATAATAGACATTGTTGAGTGATTCAAAGTAAATTGTAGTAAATCACAGAAGCTTAAAACA--------------AGTTAAATAAACTTGTTTGAGTTAATAGCAATTACAGGACTTGTAAAATACATTAGACCATGAAGGAGT-------AGTGTGTTTGTGGGGTAGATGACAACATGGCACTGCTTCAGGGAAGAAAGAATTTTTACACTTTATTACAATTTGTATTACTATTTACATTCTAATAAATGAAAACTTGATT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          400296 288 -    438202 TAATTATTAAAA----CATTT---GTGAAAAACAAAATATATAATAGACATTGTTGAGTGATTCAAAGTAAATTGTAGTAAATAACAAAAGCTCAGAACAAAATGAGAGATTCTAGTTAAGTAAACTTGTCTGAGTTAATAGCAATTACAGGGCTTGTAAAATACATTAGACCATGAAGGAGT-------AGTGTGTGTGTGGGGTAGAGGACAATATGGAACTACTTCAGTGAAGAAAGAATTTTTATACTTTATTACAATTTGTATTACTATTTACATTCTAATAAATAAAAACATAATT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66450046 291 +  90373283 TAATTATTAAAA----AAATTATCGTGGAAAACAAAATATATAATAGACATTGTTGAATGATTCAAAGTAAATTGTAGTAAATAACAAAAGCTCAGAACAAAGTGAGAGATTCTAGTTCAGTAAACTTGTCTGAGTTAATAGCAATTATAGGACTTGTAAAATACATTAGACCACGAAGGAGT-------AGTGTGTTTGTGGGATAGAGGACAATATGGTACTGCTTCAGTGAAGAAAGAATTTTTATACTTTATTACAATTTATATTACTATTTACATTCTAATAAATGAAAACTTTATT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1500494 287 -   1547936 TAATTATTAAAA--------CATCGTGAAAAACAAAATATATAATAGACATTGTTGAGTGATTCAAAGTAAATTGTAGTAAATAACAAAAGCTCAGAACAAAATGAGAGATTCTAGTTAAGTAAACTTGTCTGAGTTAATAGCAATTACAGGGCTTGTAAAATACATTAGACCATGAGGGAGT-------AGTGTGTTTGTGGGGTAGATGACAACATGGCACTGCTTCAGGGAAGAAAGAATTTTTACACTTTATTACAATTTGTATTACTATTTACATTCTAATAAATGAAAACTTTATT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           15584 281 +    168452 TAATTATTAATAAACAAATTTCTCATGGAAAACAACATATATAATAGAGATCGTTGAGTGATTCAAAGTAAATTGTAGTAAATAACAGAAGCTTAAAACA--------------AGGTAAATAAACTTGTTTGAGTTAATAGCAATTACAAGACTTGTAAAATACATTAGACCATGAGGGAGT-------AGTGTGTTTGTGGGGTAGATGACAACATGGTACTGCTTCAGGGAAGAAAGAATTTTTACACTTTATTACAATTTGTATTACTATTTACATTCTAAGAAATAAAAATATTATT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64640000 289 -  72162052 TAATTATTAATAAACAAATTTCTCATGGAAAACAAAATATATTACAGAGATTGTTGAGTGATTCAAAGTAAATTGTACTATATAACATAAGCTTAGACCAAAGTGAGAGATTCTAGTTAATTAAACTTATCCAAGTTAACAGAAATTACAGGACTTGTAAAATATGTTAGGCCACGAAGGAGT-------GGTGTGTTTGTGGGGTACCGGACAACATGGGACTGCTTCTGTGTAGAAAGAATTTTTATACCTTATTACAATTTGTATTACTATTTACATTCTAATAAAAAA------TATT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1057611 289 +   1314817 TAATTATTAATAAACAAATTTCTCATGGAAAACAAAATATATAACAGAGATTGTTGAGTGAGTCAAAGTAAATTGTACTAAATAACATAAGCCTAGACCAAAGTGAGAGATTTTAGTTAAGTAAACTTATCTAAGTTAACAGCAATTACAGGACTTGTAAAATACATTAGGCCACGAAGGAGT-------AGTGTGCTTCTGGGGTACAGGACAACATGAGACTGCTTCTGTGTAGAAAGAATTTTTATACCTTATTATAATTTGTATTACTATTTACATTCTAATAAAAAA------TATT
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79101987 285 -  85426708 TAATTATCAATGCACAGAGCTTTTATGGAATATAGAGTATGTAATAGAGCTTGGTGAGTGAATTAAACTATGTAATACTAGAGAATAAAA----AAGAAAAAATGAG-------AGT----TAAATTCATCTGTGTGAATGCCAAGTATAGGACATGTAAAATATAATTAGCTGCGAATGAGTGGTAAGCAGTGTGTCTG-GGAGAAGAGCAGGACTTGGGACTGTTTCTCTAAGAAAAGAATTTATACAAATTAGTTAAGTTTGTATTGTTATTTACATTCTAATAAATGA-AACTTTGTT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1726152 251 -   2296528 TCATTGTTAATA----ACGTTTTTGTGGAAAACAAAATATTTAATAGAGATTGCTTAGTGAATTAAAGTAATTAACACTAAACAATAAAAATGTGGAAAA-AATAAGAGACAACAGTTAATTAAACTTACTTAAATGAACGAAAAT-----------------------------------GT-------TGTATATTCGTGAGAGAGAGGGGAACATAGGACTGCTTCTCTTAA-AGAGAGTTTGTGCAACATAGTCAAATTTGTAT---TATTTACACTCTAATAAATGGAAATTTTATT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e otoGar3.GL873538              19650612 278 -  27850971 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=720741.000000
s hg38.chr14_GL000009v2_random     24544 108 +    201709 TTCAGATATTTTACATCATGTTTCTACTAGTTGAACCATCAATAG-TAAGACTTTTCAAAGATTTGGGAAGTTGTGAGTTGATGATAA---ATATC----TGTATCACC-ATCAGTG
s panTro5.chr9                  41700533 108 + 116767853 TTCAGATATTTTACATTATGTTTCTACTAGTTGAACCATCAATAG-TAAGACTTTTCAAAGATTTGGAAAGTTGTGAGTTGATGATAA---ATATC----TATATCACC-ATCAGTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96044956 108 - 114479721 TTCAGATATTTTACATTATGTTTCTACTAGTTGAACCATCAATAG-TAAGACTTTTCAAAGATTTGGGAAGTTGTGAGTTGATGATAA---ATATC----TATATCACC-ATCAGTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           81574 108 -    416926 TTCAGATATTTTAGATTATGTTTCTACTAGTTGAACCATCAATAG-TAAGACTTTTCAAAGATTTGGGAAGTTGTGAGTTGATGATAA---ATATC----TGTATCACC-ATCCGTG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40818589 106 + 122973662 TTCAGGTATTTTAGATTATATTTCTACTACTTGAACCATCAATAG-TAAGACCTTTCAAAAATTTGGGAAGTTGTGAGTTGATGATAA---ATATC------TATCACC-ATCAGTG
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          353250 106 +    434444 TTCAGATGTTTTAGATTATATTTCTACTACTTGAACCATCAATAG-TAAGACTTTTCAAAAATTTGGGAAGTTGTGAGTTGTTGATAA---ATATC------TATCACC-ATCAGTG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          400584 106 -    438202 TTCAGATATTTTAGATTGTATTTCTACTACTTGAACCGTCAATAG-TAAGACTTTTCAAAAATTTGGGAAGTTGTGAGTTGATGATAA---ATATC------TATAACC-ATCAGTG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66450337 106 +  90373283 TTCAGATATTTTAGATTATATTTCTACTACTTGAACCATCAATAG-TAAGACTTTTCAAACATTTGGGAAGTTGTGAGTTGATGATAA---ATATC------TATCACC-ATCAGTG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1500781 106 -   1547936 TTCAGATATTTTAGATTGTATTTCTACTACTTGAACTGTCAATAG-TAAGACTTTTCAAAAATTTGGGAAGTTGTGAGTTGATGATAA---ATATC------TATCACC-ATCAGTG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           15865 107 +    168452 TTCAGATATTTTAGATTGTGTTTCTACTAGTTGAATCATCAATAG-TAAGACTTTTCAAAGATTTGGGAAGCTGTGAGTTGATGATAA---ATGTC------TATCACCAATGGGTG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64640289 112 -  72162052 TTCAGACATTTTAGATTATTTTTCCACTAGTTGGGCCATCAATAGTTAAGACTTTTCAAAGATTTGGGAAGTTGAGAATGGATGATAATATTTATC----TGTATCACC-ATCGGTG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1057900 111 +   1314817 TTCAGATATTTTAGATTATTTTTCTACTAGGTGGACCATCAATAG-TAAGACTTTTCAAAGATTTGGGAAGTTGAGAGTTGATGATAATGTTTATC----TGTATCACC-ATCAGTG
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19650890 112 -  27850971 TTCAGATTTTTCTTAGTGTGATTCTATGGGTTTGATCTTTGGAAA-TAAGACTTGTTAAAGATCTGGGAATTTGAAAGTTGATGATAA---ATACCCATCTGTATCACA-GTCACTG
i otoGar3.GL873538             I 278 C 0
s canFam3.chr2                  79102272 109 -  85426708 TTCAGATTTTTCCGATTGGGATTCTA---GTTTATCCCTCGGTAA-TGAGACTTGTCAAAGAACTGGGGATTTGAAAGTTGATGATAA---ATGCCCATTTGTATCACA-ACCAATG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1726403 112 -   2296528 TTCAGATTTTTCAGATTGGGATTCTACTAGTTTGACCCTCAATAA-TGAGACTTGCCAAACAGCTGGGGATTTGAAAGTTGATGATAA---ATGTTCATTTGTATCACA-ATCAATG
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=2816999.000000
s hg38.chr14_GL000009v2_random     24652 452 +    201709 AT--AAAAATCAGACAGCAACTACCACAGATTTTGGACACGCGAACTTCATAGTTAAAGAAAGGATTAATCTTGGAGCTGTGTTTCTATCAAGGAATTACACTCTTCTTTACCTGTGTGAATCGCAGTTATTAGAGTAGAAAGAGAGCAAAGAAGG---GAAAGAAGCATAGAAAATTTTATTCTAGATTACCTCGTTTGGCTTCATG---CTACCATAGTTCTGACTTTTAAAAAGTCATTTTGTGGTCAAATGTAC-TTTGTGTTTACTCCCCTTATGCAGCCTACAACCAAACAGAATGGTTCTTAGCAAGGCA-TTTGTATTCTTCCCTTAAGGAAAGCAACATATAAATAAC-AAAGAGAATGAGAAGAAAGAGTGATTTCATTGAGGTTGGTATTTAACATAAATTTGAGTGCAGGTACCATGATTATATTTAGAATT-TTGTggctggat------------gggaaaa
s panTro5.chr9                  41700641 453 + 116767853 ATCAAAAAATCAGACAGCAACTACTACAGACTTTGGACACGTGAACTTCATATTTAAAGAAAGGATTAATCTTGGAGCTGTGTTT-TATCAGGGAATTATACTCTTCATTACCTGTGTGAATTGCAGTTATTAGAGTAGAAAGAGAGCAAAGAAGG---GAAAGAAGCATAGAAAATTTTATTCTAGATTACCTCATTTGGCTTCATG---CTACCATAGTTCTGACATTTAAAAAGTCATTTTGTGGTCAAATGTAC-TTTGTGTTTACTCCCCTTATGCAGCCTACAACCAAACAGAATGCTTCTTAGCAAGGCA-TTTGTATTCTTTCCTTAAGGAAAGCAACATAAAAATAAC-AAAGAGAATTAGGAGAAATAGTGATTTCATTGAGATTGGTATTTAACATAAATTTGAGTGTGGGTACCATGATTATATTTAGAATT-TTggggctggat------------gggaaaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96045064 453 - 114479721 ATCAAAAAATCAGACAGCAACTACTACAGACTTTGGACACGTGAACTTCATATTTAAAGAAAGGATTAATCTTGGAGCTGTATTT-TATCAGGGAATTATACTCTTCATTACCTGTGTGAATCGCAGTTATTAGAGTAGAAAGAGAGCAAAGAAGG---GAAAGAAGCATAGAAAATTTTATTCTAGATTACCTCATTTGGCTTCATG---CTACCATAGTTCTGACATTTAAAAAGTCATTTTGTGGTCAAATGTAC-TTTGTGTTTACTCCCCTTATGCAGCCTACAACCAAACAGAATGCTTCTTAGCAAGGCA-TTTGTATTCTTTCCTTAAGGAAAGCAACATAAAAATAAC-AAAGAGAATGAGGAGAAATAGTGATTTCATTGAGATTGGTATTTAACATAAATTTGAGTGCGGGTACCATGATTATATTTAGAATT-TTgggactggat------------gggaaaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           81682 449 -    416926 ATC-AAAAATCAGACAGCAACTAC--AAGACTTTGGACACGCGAACTTCATAGTTAAAGAAAGGATTAATCTTGGAGCTGTGTTTTTATCAGGGAATTATACTCTTCATTACCTCTGTGAATCGCAGTTATTAGAGTAGAAAGAGAGCAAAGAAGG---GAAACAAACATAGAAAATTTTATTCTAGATTACCTCAGTTGGCTTCATG---CTACCATAGTTCTGGCTTTTAAAAAGTCATTTTGTGGTCAAATGTAC-TTTGTGTTTACTCCCTTTATGCAGCCTACAACCAAACAGAATGCTTCTTAGCAAGGCA-TTTGTATTCTTCCCTTAAGGAAAGCAACATATAAATAAC-AAAGAGAATGAGGAGAAAGAGTAATTTCATTGAAGTTGGTATTTAACATAAATTTG-GTGTGGGTACCATGATTATATTTAGAATT-TTGGGCCTggat-------------agaaaa
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40818695 443 + 122973662 ATC-AAAAATCAGACAGCAACTAC---AGACTTTGGACACACGAACTTCACAGTTAAAGAAAGGATTAATCTTGGAGCTGTGTTTCTATCAGGCAATTATACTC-----TACCTGTGTGAATCACAACTATTAGAGTAGAAAGAGAGCAAAGAAGG---GAAAGAAGCATAGAAAATTTTATTCTAGATTACCTTGGTTGGCTTCATG---CTACCATAGTTCTGACTTTTAAAAAGTCATTTTGTGGTCAAATGTAC-TTTGTGTTTACTCCCCTTATGCAGCCTACAACCAAACAGAATGCTTCTTAGCAAGGCA-TTTGTATTGTTCCTTTAAGGAAAGCAACATATAAATAAC-AAAGAGAATGAGGAGAA--AGTAATTTCACTGAGGTTAGTATTTAACATAAATTTGAGTGTGGGTACCATGATTATAGTTAGAATT-TTGGGGCTGGAT------------GGGAAAA
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          353356 448 +    434444 ATC-AAAAATCAGACAGCAACTAC---AAACTTTGGACACACAAACTTCGTAGTTAAAGAAAGGCTTAATCTTGAAGCTGTGTTTCTATCAGGGAATTATACTCTTCATTACCTGTGTGAATCACAGCTATTACAGTAGAAAGAGAGCAAGGAAGG---GAAAGGAGCATAGAAAATTTTATTCTAGATTCCCTCGGTTGGCTTCATG---CTACTGTAGTTCTGGCTTGT--AAAGTCATTTTGTGGTCAAATGTAC-TTTGTGTTTACTCCCCTTATGCAGCCTACAGCCAAACATAATGCTTCTTAGCAAGGCA-TTTGTATTCTTCCTTTAAGGAAAGCAACATACAAATAAC-AAAGAGAATGAGGAGAAAGAGTAATTTCATTGAGGTTAGTATTTAACATAAATTTGTGTGTGGGTACCATGATTATATTTAGAATT-TTGGGCCTCGAT------------TGGAAAA
i macNem1.NW_012012823v1       C 0 I 1
s cerAty1.NW_012002921v1          400690 448 -    438202 ATC-AAAAATCAGACAGCGACCAC---AAACTTTGGACACACGAACTTCATAGTTAAAGAAAGGATTAATCTTGAAGCTGTGTTTCTATCAGGGAATTATACTCTTCATTACCTGTGTGAATCACAGCTATTACAGTAGAAAGAGAGCAAGGAAGG---GAAAGAAGCATGGAAAATTTTATTCTAGATTCCCTCGGTTGGCTTCATG---CTACCGTAGTTCTGACTTGT--AAAGTCATTTTGTGGTCAAATGTGC-TTTGTGTTTACTCCCCTTATGCAGCCTACAGCCAAACATAATGCTTCTTAGCAAGGCA-TTTGTATTCTTCCTTTAAGGAAAGCAACATATAAATAAC-AAAGAGAATGAGGAGAAAGAGTAATTTCATTGAGGTTAGTATTTAACATAAATTTGTGTGTGGGTACCATGATTATATTTAGAATT-TTGGGCCTCGAT------------TGGAAAA
i cerAty1.NW_012002921v1       C 0 I 1
s chlSab2.chr2                  66450443 448 +  90373283 ATG-AAAAATCAGACAGCGACCTC---AAACTTTGGACATACGAACTTCGTAGTTAAAGAAAGGATTAATCTTGAAACTGTGTTTCTATCAGGGAATTATACTCTTCATTACCTGTGTGAATCACAGCTATTACAGTAGAAAGAGAGCAAGGAAGG---GAAAGAAGCATGGAAAATTTTATTCTAGATTCCCTCGGTTGGCTTCATG---CTACCATAGTTCTGACTTGT--AAAGTCATTTTGTGGTCAAATGTAC-TTTGTGTTTACTCCCCTTATGCAGCCTACAGCCAAACATAATGCTTCTTGGCAAGGCA-TTTGTATTCTTCCTTTAAGGAAAGCAACATATAAATAAC-AAAGAGAATGAGGAGAAAGAGTAATTTCATTGAGGTTAGTATTTAACATAAATTGGAGTGTGGGTACCATGATTATATTTAGAATT-TTGGGGCTAGAT------------TCGAAAA
i chlSab2.chr2                 C 0 I 1
s manLeu1.NW_012105442v1         1500887 447 -   1547936 ATA-AAAAATCAGACAGCGACCAC---AAACTTTGGACACACGAACTTCATAGTTAAAGAAAGGATTAATCTTGAAGCTGTGTTTCTATCAGGGAATTATACTCTTCATTACCTGTGTGAATCACAGCTATTACAGTAGAAAGAGAGCAAGGAAGG---GAAAGAAGCATGGAAAATTTTATTCTAGATTCCCTCGGTTGGCTTCATG---CTACCATAGTTCTGACTTGT--AAAGTCATTTTGTGGTCAAATGTAC-TTTGTGTTTACTTCCCTTATGCAGCCTACAGCCAAACATAATGCTTCTTAGCAAGGCA-TTTGTATTCTTCCTTTAAGGAAAGCAACATATAAATAAC-AAAGAGAATGAGgagaaagagtaatttcattgaggttagtatttaacataaatttgagtgt-ggtaccatgattatatttagaatt-ttggggctggat------------tggaaaa
i manLeu1.NW_012105442v1       C 0 I 15
s colAng1.NW_012121088v1           15972 450 +    168452 AAG-AAAAATCAGACAGCAGCTAC---AGACTTTGGACACACGAACTTCATAGTTAAAGAAAGAATTAATCTTGGAGCTGTGTTTCTATCAGGGAATTATGTTCTTCATTACCTGTGTGAGTCGCAGCTATTAGAGTAGGAAAAGAACAAAGAAGG---GAAGGAAGCATACAACATGTTATTCTCGATTCCTTTGGCTGGGTTCGTG---CTTCCATAGTTCTGACTTTTCAGAAGTCATTTTGTGGCCAAAAGTAC-TTTGTGTTTCCTCCCCTTGTGCAGCCTACACCCAAACAGAATGCTTCTTAGCAAGGCA-TTTGTATTCTTCCTTTAAGGAAAGCAACATACAAATAAC-AAAGAGAATAAGgagaaagagtaatttcattgaggttagtatttaacataaatttgagagtgggtaccatgattatatttagaatt-ttggggctggat------------tggaaaa
i colAng1.NW_012121088v1       C 0 I 15
s saiBol1.JH378105              64640401 447 -  72162052 ATC-AAAAATCAGGCAACAATTAC---AGACTTTGGACACATGAACTTCATAGTTAAAGAAAGGATTAATTTTGGAGCTGTGTTTCTATCAGGGAATTATACTCTTCATTACCTGTGTGAATCACAGCTATTAGGGTAGAAAGAGAAGAAAAAAGG---AAAAGAAGCAT--ACAGTTTTATTCTAGACTTCC-CAGTTGGCTTCATG---CTACCATAGTTCTGACTTTTAAAAAGTCATTTTGTGGCCAAATGTAC-TTTACGTTTACTCCCCTTATGCAGCCTACAACCAAACAGAATGCTTCTTACCAAGGCA-TTTGTATTCTTCCTTTGAGGACAGCAACATATAAATAAC-AAAGAGAATGAGGAGAAAAAGTAATTTTACTAAGGTTAGTACTTAACATAAACTTGAGTGTGGGCACCATGATTATAATTACAATT-CTGAGGCTGGAT------------GAGAAAC
i saiBol1.JH378105             C 0 I 1
s cebCap1.NW_016107851v1         1058011 445 +   1314817 ATC-AAAAATCAGGCAGCAACTAC---AGACTTTGGACACATGAACTTCATAGTTAAAGAAAGGATTAATTTTGGAGCTGTGTTTCTATC--GGAATTACACTCTTCATTACCTGTGTGAATCACAGCTATTAGGGTAGAAAGAGAACAAAGAAGG---AAAAGCAGCAT--ACAGTTTTATTCTAGATTACC-CAGTTGACTTCATG---CTACCATGGTTCTGACTTTTAAAAAGTCATTTTGTGGCCAAATGTAC-TTCGCGTTTACTCCCCTTATGCAGCCTACAACCAAACAGAACGCTTCTTAGCAAGGCA-TTTGTATTCTTCCTTTGAGGACAGCAGCGTATAAATAGC-AAAGAGAATGAGGAGAAAAAGTAATTTTATTGAGGTTAGTACTTAACATAAACTTGAGTGTGGGCACTATGATTATATTTAGAATT-CTgaggctggat------------gggaaaa
i cebCap1.NW_016107851v1       C 0 I 1
s canFam3.chr2                  79102381 435 -  85426708 ACA-AAAATTGAGTCCGCATCCGG---AGAATTTGGACAGACGACCTTAATGGATAAAGAAAATATTAATATTGGAGCTGTGTTTCTGTTAGAGAATTCTACACTCCATGACCTGTGTGAATCAGAGCTACCAGAAAACAGAGAGAGCAAAAAAGG---TAAAGAATCATAGAGAATT------CAGACT-----------CTTCATGACTTTACCATAGTTCTGATTTTTCAAAACTAATTTTGTGGCAAAATTTAC-TTTGTGTTGACTCCTTTCATGCAACATACTACCAAAGAGAGCATCTTTTAGCAAGACATTTTGCATTCTTCCTCTAACCGAAGATACATATAAATAAG-AAAGAGAATTAGAAGAA--AATAATTTCTTTTAGGCTCGTATTCAGCTTTCACTTGAGAGTGGGTAGCAGGATTATATTTAGAATT-TGGGGACCAGTT------------GGGAAAA
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1726515 461 -   2296528 ACC-AAAAATCAGTCAGCATCCAC---AAAATTTGGACAGATGACCTTAATAGATAAAGAAAAGTTTAATATTGGAGCTGTATTTCTATTAGGGGATTATTCTCTCCATGACCTGTGTGAATCACAGCTATCAGAAAAGAAAGAGAGCAAAGAAGGTAATAAAGAAGCATAGAAGATTCAACCCTAGAGTACT-TGTGTGCCTTCACT--------GTAGTTGTGACTTTG-AAAAATTTTTTTGTGGTAAAATTTCCTTTTGTGTATACTCCCCTCATGCAGCCTACAACTGAACAGACTCCATTTTAACAAGGCA-TTTGTATTCTTTCTTTAATCAAAGCCATATATAAATTACAAAAAAGAATTAGGAGAAGGAATAATTTCGTTCAGGTTAGTGTTTAGCATACATTTGAGAGTGGATGACAGAATTATTTTCAGAACTATTGTGACTAAATAGTTCTGAATAGGGGAAAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359  17 -   6597006 I
e otoGar3.GL873538              19651002   0 -  27850971 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=-10593.000000
s hg38.chr14_GL000009v2_random     25104 6 +    201709 -ccagct
s panTro5.chr9                  41701094 6 + 116767853 -ccagct
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96045517 6 - 114479721 -ccagct
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82131 6 -    416926 -ccagct
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819138 4 + 122973662 -CCAG--
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          353805 5 +    434444 -GAAGT-
i macNem1.NW_012012823v1       I 1 C 0
s cerAty1.NW_012002921v1          401139 5 -    438202 -GAAGT-
i cerAty1.NW_012002921v1       I 1 C 0
s chlSab2.chr2                  66450892 5 +  90373283 -GAAGT-
i chlSab2.chr2                 I 1 C 0
s saiBol1.JH378105              64640849 5 -  72162052 -CAGGT-
i saiBol1.JH378105             I 1 C 0
s cebCap1.NW_016107851v1         1058457 5 +   1314817 -caggt-
i cebCap1.NW_016107851v1       I 1 C 0
s canFam3.chr2                  79102817 5 -  85426708 -TAGAT-
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1726976 6 -   2296528 TAAGGT-
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e otoGar3.GL873538              19651002 0 -  27850971 C
e colAng1.NW_012121088v1           16422 15 +    168452 I
e manLeu1.NW_012105442v1         1501334 15 -   1547936 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=225298.000000
s hg38.chr14_GL000009v2_random     25110 47 +    201709 agatgtctatagatttcctactcaaacaca-atgtgcc---tttgttttac
s panTro5.chr9                  41701100 47 + 116767853 agacatctacagatttcctactcaaacaca-atgtgtc---tttgttttat
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96045523 47 - 114479721 agacatctacagatttcctactcaaacaca-atgtgtc---tttgttttat
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82137 47 -    416926 agacgtctacagatttcctactcaaacaca-atgtgcc---tttgttttat
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819142 38 + 122973662 --------GTAGATTTCCTTCTCAAACACA-ATGTGGC---TTTG-ATTAT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          353810 47 +    434444 AGATGTCTACAGATTTCCTACTCAAACACA-ATTTGGC---TTTGATTCAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401144 47 -    438202 AGATGTCTACAGATTTCCTACTCAAACACA-GTTTGGC---TTTGATTCAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66450897 47 +  90373283 AGATGTCTACAGATTTCCTACTCAAAcaca-atgtggc---tttgattcat
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1501349 47 -   1547936 agacgtctacagatttcctagtcaagcaca-gtgtggc---tttgatttat
i manLeu1.NW_012105442v1       I 15 C 0
s colAng1.NW_012121088v1           16437 47 +    168452 agacgtctacagatttcctcctcaaacaca-atgtggc---tttgattcat
i colAng1.NW_012121088v1       I 15 C 0
s saiBol1.JH378105              64640854 50 -  72162052 AGACAGCTACAGATTTATTACTCAAACATA-ATGTGGCTTCTTTGATTTAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1058462 50 +   1314817 agacagctactgatttactactcaaacaca-atgtggcttatttgatttat
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79102822 43 -  85426708 AGAGATGTAAAGATTGTTTATGCAAA-ACA-GTTT------CTTAGTTTAG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1726982 48 -   2296528 AGAGATCTAAAGATTGCCTATTAGAACACACAGATTTC---TTAGCTTTAT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411359 17 -   6597006 I
e otoGar3.GL873538              19651002  0 -  27850971 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1416502.000000
s hg38.chr14_GL000009v2_random     25157 200 +    201709 ttttacgtctctaatttagcaattattaggtacaactgtatgc-agtgtcact--------aaaaa--tacctcccaaaaccaaatattaa----------ataatGTCTATGGCTTTCTGT------------TTTATAGTGTTTATTTTTGCAATATTAATGGGAACCACTTAGCATTTGCCTTGTGGTG---T-CTCCTCAGCTGTATTCACATATTCCATCACCTTTTCTTA----A
s panTro5.chr9                  41701147 200 + 116767853 ttttacatctataattttgcaattattaggtacaactgtatgc-agtgtcact--------aaaaa--taccttccaaaaccaaatattaa----------ataatGCCTATGGCTTTCTGT------------TTTATAGTGTTGATTTTCCCAATATTAATGGGAACCATTGAGCATTTGCCTTGTGGTG---C-CTTCTCAGCTGTATTCACACATTCCATCACCTTGTCTTA----A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96045570 200 - 114479721 ttttacatctataattttgcaattattaggtacaactgtatgc-agtgtcact--------aaaaa--taccttccaaaaccaaatattaa----------ataatGCCTATGGCTTTCTGT------------TTTATAGTGTTGATTTTCCCAATATTAATGGGAACCATTGAGCATTTGCCTTGTGGTG---C-CTTCTCAGCTGTATTCACACATTCCATCACCTTGTCTTA----A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82184 200 -    416926 ttttacatctctaattttgcaattattaggtacaactgtatgc-agtgtcact--------aaaaa--taccttccaaaaccaaatattaa----------ataatgcctatggctttctgt------------attataatgttgatttccccaatattaatgggaaccattgagcgttTGCCTTGTGGTG---T-CTCCTCAGCTGTATTCACACATTCCATCACCTTGTCTTA----A
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819180 200 + 122973662 TTTTACATCTCTAATTCCGCAATTATTAGGTACAACTGTATGC-AGTGTCACT--------AAAAA--TACCTTCCAAAACCAAATATTAA----------ATAATGTCTTTGGCTTTCTGT------------ATTATAGTGTTGATTTTCCCAATATTAATGGGAACCATTGAGCATTTGCCTTGTGATG---T-CTCCTAAGCTGTACTCACACATTCCATCACCTTGTCTTA----A
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          353857 204 +    434444 TTTTACATCTCTAATTGTGTAATTATTAGGTATAATTATATGC-AGTGTCACT--------AAAAA--TACCTTCCCAAACCAAATATTAA----------ATGATGTCTATGGCTTTCTGT------------ATTATAGTGTTGATTTTCCCAATATTAATGGGAACCATTGAGCATTTGCCTTGTAGTG---T-CTCCTCGGCTGTACTCACACATTCCATCACCTTGTCTTAATGGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401191 204 -    438202 TTTTACATCTCTAATTGTGCAATTATTAGGTATAATTATATGC-AGTGTCACT--------AAAAA--TACCTACCCAAACCAAATATTAA----------ATGATGTCTATGGCTTTCTGT------------ATTATAGTGTTGATTTTCCCAATATTAATGGGAACCATTGAGCATTTGCCTTGTAGTG---T-CTCCTCGGCTGTACTCACACATTCCATCACCTTGTCTTAATGGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66450944 201 +  90373283 ttttacatctctaattttgcaattattaggtataattatatgc-agtgtcact-------aaaaaa--taccttcccaaaccaaatattaa----------atgatGTCTATGGCTTTCTGT------------ATTATAGTGTTGATTTTTCCAATATTAATGGGAACCATTGAGCATTTGCCTTGTAGTG---T-CTCCTCAGCTGTACTCACACATTCCATCACCTTGTCTTA----A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1501396 200 -   1547936 ttttacatctctaattctgcaattattagttacaactgtatgc-aatgtcact--------aaaaa--taccttcccaaaccaaatgttaa----------atgatGTCTATGGCTTTCTGT------------ATTATAGTGTTGATTTTTCCAATATTAATGGGAGCCATTGAGCATTTGCCTTGTTGTG---T-CTCCTCGGCTGTACTCACACATTCCATCACCTTGTCTTA----A
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           16484 200 +    168452 ttttacatctctaattctgcaattattagttacaacagtatgc-aatgtcact--------aaaaa--taccttcccaaaccaaatattaa----------ataatGCCGATGGCTTTCTGT------------ATTATAGTGTTGATTTTCCCAATACTAATGGGAACCATTGAGCATTTGCCTTGTGGTG---T-CTCCTCAGCTGTACTCACACATTCCTTCACCTTGTCTTA----A
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64640904 200 -  72162052 TTTTACGTCTCTAATTTTGCAATTGTTAGGTAGAACTATATGC-AGTGTTACT--------AAAAA--TACCTTCCAAAATCAAATATTAT----------ATAATGTCTATGGCTTTCTGT------------GTTATAGTGTTGATTTTTCTAATATTAATGGGAACTGTTGAGCATTTGCTTTGTCGTG---T-CTCCTCAGCTGTATTCGTACTTTCCATCATGTTATTTTG----A
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1058512 200 +   1314817 ttttacatctctaattttgcaattgttaggtagaactatatgc-agtgttact--------aaaaa--tactttccaaactcaaacatTAT----------ATAATGTCTATGGCTTTCTGT------------ATTATAGTGTTGATTTTTCTAATATTAATGGGAGCTGTTGAGCATTTGCTTTGTGGTG---T-CTCCTCAGCTGTATTCATACTTTCCATCATCTTATTTTA----A
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6411376 200 -   6597006 TTTTACGTCTCTAATTTTGCAATTGTTAGGTAGAACTATATGC-AGTGTTACT--------AAAAA--TACCTTCCAAAATCAAATATTAA----------ATAATGTGTATGGCTTTCTGT------------ATTATAGTGTTGATTTTTCTAATATTAATGGGAACTATTGAGCATTTGCTTTATGGCG---T-CTCCTCAGCTGTATTCATACTTTCCATCATCTTATTTTA----A
i aotNan1.NW_018488791v1       I 17 C 0
s canFam3.chr2                  79102865 216 -  85426708 TTTTTTAGCTCTAAATTCATAAGTATTGGTCAT-ACTATATTC-ACTGTAACAACAACAAAAAAAG--CACCTTCTCAAACAGAATATTAAAATATTTCCTATATTCTCTATGACTT----T------------ATTTTGGAGTTGACTTTCCCAGCAGTAACGGGAATTGTTGAGAATTTACTACATAGTATTCT-CTTCTCAGCTATGTTGGTATAGTCCATCTCTTTGTTTGA----T
i canFam3.chr2                 C 0 I 160
s dasNov3.JH570393               1727030 216 -   2296528 TTTTATATCTCTGAATTCACAAGTACTAGTTATAACTATATTCAAATGTAGCT--------AAAAAATCACCTTCTAAAACCAAATATTAA----------ATTATTTCTTGTATTTTCTATTACTTTTGTGTATTTTTAGAACTGGCTTTCCCAGTAGTAATTGGAATTGTTGAGAATTTGCTGTATAGTA---TCCTCCTCAGTTGTGTCCACATAGCCTATCACCTTGTTTTA----T
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19651002   0 -  27850971 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1972343.000000
s hg38.chr14_GL000009v2_random     25357 311 +    201709 ------------------------TGGATAATCA--------------------------------------------------TGCACTATGAGTAAGGGTTTTCAGAAAAGCTGTGTCTTTTAAAGATAACACAG-GAGCATCAAATTTAATTCTGCTAGGACGCCTGGTCTACTGATTAACTGCAGCTAATATGAGGTCTACTTC------ACATCCAAGTTAAATTCAGTGCCCTTAATC-----AGTCATATGATGAGGTCAACAGTAATAAATTATGCAATA---TTTTTTCACCCACCCCTATAGTTTTAATTTCTTT-TTCCCCTTGTGTCTGTGTTTAACATTTTGCTTTGCAAAACATGATGATAATCTTCTAAAGTAGTGAGGACAAGCT
s panTro5.chr9                  41701347 311 + 116767853 ------------------------TGGATAATCA--------------------------------------------------TGCACTATGAGTATGCATTTTCAGAAAAGCTGTGTCATTTAAAGATAACACAG-GAGCATCAAATTTAATTCTGCTAGGATGCCTGGTCTACTGATTAACTGCAGCTAATATGGGGTCTACTTC------ACATCCAAGTTAAATTCAGTGCCCTTAATC-----AGTCATATGATGAGGTCAACAGTAATAAATTATGCAATA---TTTTTTCACCCACCCCTATAGTTTTAATTTCTTT-TTCCCCTTATGTCTCTGTTTAACATTTTGTTTTGCAAAACATGATGATAATCTTCTAGAGTAGTGAGGACAAGCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96045770 310 - 114479721 ------------------------TGGATAATCA--------------------------------------------------TGCACTATGAGTATGCATTTTCAGAAAAGCTGTGTCATTTAAAGATAACACAG-GAGCATCAAATTTAATTCTGCTAGGATGCCTGGTCTACTGATTAACTGCAGCTAATATGGGGTCTACTTC------ACATCCAAGTTAAATTCAGTGCCCTTAATC-----AGTCATATGATGAGGTCAACAGTAATAAATTATGCAATA---TTTTTTCACCCACCCCTATAGTTTTAATTTC-TT-TCCCCCTTATGTCTGTAATTAACATTTTGTTTTGCAAAACATGATGATAATCTTCTAGAGTAGTGATGACAAGCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82384 306 -    416926 ------------------------TGGATAATCA--------------------------------------------------TGCACTATGAGTATGGGTTTTCAGAAGAGCTGTATCATTTAAAGATAACACAG-GAGCATCAAATTTAATTCTGCTAGAATACCTGGTCTATTGATTAACTGCAGCTAATATGGGGTCTACTTC------ACATACAAGTTAAATTCAGTGCCCTTAATC-----AGTCATATGGTCAGGTCAACAGTAATAAATTATGCAATA---TTTTTT----CACCCCTATAGTTTTAATTTCTCT-TTCCCCTTATGTCTAGAATTAACATTTTATTTTAGAAAACATGATGATAATCTTCTAGAGTAGTGATGACAAG-T
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819380 307 + 122973662 ------------------------TGGATAATCA--------------------------------------------------TGCACTAGGAGTATGGATTTTCAGCAGAGCTGTATCATTTAAAGATAACACAT-GAGCATCAAATTTAATTCTGCTAGAACACCCAGTCTATTGATTAATTGCAGCTACTATGGGGTCTACGTT------ACATACAAGTTAAATTCAGTGCCCTTAATC-----AGTTATATGATCAGGTGAACAATAATAAATTATGCAATA---TTTTTT----CACCCCTACAGTTTTAATTTCTTT-TACCGCTTATGTCTAGAATTAACATTTTGTTTTGCAAAACATGATGATAATCTTCTAGAGTGGTGATAACAAGCT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354061 306 +    434444 ------------------------TGGATAATCA--------------------------------------------------TGCACTAGGAATACGGGTTTTCATCAGAGCTGTATCATTTCAAGATAACACAT-GAGCATCAAATTTAATTCTGCTAGAACACACAGTCTGTTGATTAACTGCAGA-ACTATGGGGTCTACTTT------ACATACAAGTTAAATTCAGTGCCTTTAATC-----AGTCATATGATCAGGTGAACAGTAATAAATTATGCATTA---TTTTTT----CACTCCTATAGTTTTAATTTCTTT-TTCCCCTTATGTCTAGAATTAACATTTTGTTTTATAAAACCTTATGGTAATCTTCTAGAGTAGTGATGAGAAGCC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401395 306 -    438202 ------------------------TGGATAATCA--------------------------------------------------TGCACTAGGAATACGGGTTTTCATCAGAGCTGTATCATTTCAAGATAACACAT-GAGCATCAAATTTAATTCTGCTAGAACACACAGTCTGTTGATTAACTGCAGA-ACTATGGGGTCTACTTT------ACATACAAGTTAAATTCAGTGCCTTTAATC-----AGTCATATGATCAGGTGAACAGTAATAAATTATGCATTA---TTTTTT----CACTCCTATAGTTTTAATTTCTTT-TTCCCCTTATGTCTAGAATTAACATTTTGTTTTATAAAATCTTATGGTAATCTTCTAGAGTAGTGATGACAAGCC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451145 302 +  90373283 ------------------------TGGATAATCA--------------------------------------------------TGCACTAGGAATACAGGTTTTCATTAGAGCTGTATCATTTCAAGATAACACAT-GAGCATCAAATTTAATTCTGCCAGAACACCCAGTCTATTGATTAACTGCAGA-ACTATGGGGTCTACTTT------ACATACAAGTTAAATTCAGTGCTCTT---------AGTCATATGAGCAGGTGAACAGTAATAAATTATGCATGA---TTTTTT----CACTCCTATAGTTTTAATTTCTTT-TTCCCGTTATGTCTAGAATTAACATTTTGTTTTATAAAACATGATGATAATCTTCTAGAGTAGTGATGACAAGCT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1501596 301 -   1547936 ------------------------TGGATAGTAA--------------------------------------------------TCCACTAGGAGTATGGGTGTTCAGAAGAGCTGTATCATTTAAAGATAACACAG-GAGCATCAAATTTAGTTCTGCTAGAACACTCAGTCTATTGATTAACTGCAGA-ACTATAGGGTCTACTTT------ACATACAAGTTAAATTCAGTGCCCTT---------AGTCATATGATCAGGTGAACAGTAATAAATTATGCATTA---TTTTTT----CACTCCTATACTTTTAATTTCTTT-TTCCCTTTATGTCTAGAATTAACATTTTGTTGTATAAAACATGAT-ATAATCTTCCAGAGTAGTGATGACAAGCT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           16684 306 +    168452 ------------------------TGGATAATCA--------------------------------------------------TGCACTAGGAGTACGGGTGTTCAGAAGAGCTGTATCATTTAAAGATAACACAG-GAGCATCAAATTTAATTTTGCTAGAACAC-CTGTCTATTGACTAACTGCGGCTAATATGGGGTCTACTTC------ACATACAAGTGAAATTCAGTGCTCTTAATC-----AGTCCTATGATCATGTCAACAGTAATAAATTATGCAATA---TGTTTT----CACCCCTATAGCTTTAATTGATTT-TTCCTCTTATGTCTAAAATTAACATTTTGTTTTACAAAACATAATGATAGTCTTCTAGAGTAGTGATGACAAGTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641104 308 -  72162052 ------------------------TGGATAATCA--------------------------------------------------TGCACTAGGAATACGGGTTTTAAGAAGAGTTATATCATTTAAAGAGAACACAT-GAGCATCAAATTTAATTCTGCTAGAACACCCTGTCAGTTAATTAACTGCAGCTAATATGTGGTCTACTTT------ATGTACAAGTTAAATTCAGGGCCCTTAATC-----AGTCATGTGATCAGGTCCACAGTAATAAATCACGTAATA---TTTTTT----CACCCCTATAGTTTTAATTTCTTTCTTCCCCTTACGTCTAGAATTAACATTGTGTTTTACAAAACACGATGATAATCTTACAGAGTAGTGTTAACAAGCT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1058712 303 +   1314817 ------------------------TGGATAATCA--------------------------------------------------TGTACTAGGAATACGAGTTTTAAGAAGAGCTGTATCATTTAAAGAGAACACAT-GAGCATCAAATTTAATTCTGCTAGAGCACCCAGTCTGTTGATTAATTGCAGCTAATATGAGGTCTACTTT------ACGTACAAGTTAAATTCAGTGCCCTTAATC-----AGTCATATGATCAGCTCAACAGTAATAAATCATGCAATA---CTTTTT----CACCCCTATAGTTTTAATTTCTTTCTTCCCTTTACGTCTAGAATTAACATTG-----TACAAAGCACGATGATAATCTTACAGAATAGTGATAACAAGCT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6411576 308 -   6597006 ------------------------TAGATAATCA--------------------------------------------------TGCACTAGGAATACGGGTTTTAAGAAGAGCTGTATCATTTAAAGAGAACACAT-GAGCATCAAATTTAATTCTGGTAGAACACCCAGTCTGTTAATTAACTGCAGCTAATATGTGGTCTACTTT------ATGTACAAGTTAAATTCAGGGCCCTTAATC-----AGTCATGTGATCAGGTCCACAGTAATAAATCATGCAATA---TTTTTT----CACCTCTATAGTTTTAATTTCTTTCTTCCCCGTATGTCTAGAATTAACATTGTGTTTTACAAAACATGATGATAATCTTATAGAGCAGTGATAACAAGCT
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79103241 350 -  85426708 ------------------------tggatacttaactggctgagccacccaggtgcTGTTTTATTATTTTAAATGAGTAAAGAGTTCACAAGGAATATTGGTTTTAAG--GCACTGTATCATTCAAAAATAATATATAGAAAGTCAATTGTAATTCTACTAAGATTCTCAGT----TGATTAACCACATCTAACATGTGTTCTAATTCTAATTATTGTACCAGTT-AATCCAGTGTCCTTTATC-----AGTCATATGATCATGTCTGTACTAATAAGTCATACAATA---TTTTTT----CACTCTTATAGTTTTATGTTATTT-TCTTTCT----TCTAGAATTAAC---TTATTTTCTAAAGATTTTCAATTATCTCCTAGAGTAGTGAGTATATGCT
i canFam3.chr2                 I 160 I 2
s dasNov3.JH570393               1727246 331 -   2296528 TATTGTTTCTAAAGAATAGTTTACAAGAGAATAG--------------------------------------------------TTTACAAGAAATAATGGTTTTAAGGAGTGCTATA--ATTTAAAAATAACATG--GAAAATCAATTCTAATTCTACTAAGTCACCCAGTCTATTGATTAATTGCATCAAATATGTGTTCTACCTT------ATGTACCAGT-GAATTCAGTGACCTTAATTTAGAAAGTCATATCATCAGGTCTGTAGTAATAAATCATGTAAAAAATTTTTTT----TACCTCTGTAGTTTTATCTTCTTT-----CCTTAACTGTCTGATTAACATAGCATTTTGCAGAAATTCTCAATTATCTCCTGGAGGATTGACTACAAGCT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19651002   0 -  27850971 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=14976.000000
s hg38.chr14_GL000009v2_random     25668 2 +    201709 AT
s panTro5.chr9                  41701658 2 + 116767853 AT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046080 2 - 114479721 AT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82690 2 -    416926 AT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819687 2 + 122973662 AT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354367 2 +    434444 AT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401701 2 -    438202 AT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451447 2 +  90373283 AT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1501897 2 -   1547936 AT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           16990 2 +    168452 AT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641412 2 -  72162052 AT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1059015 2 +   1314817 AT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6411884 2 -   6597006 AT
i aotNan1.NW_018488791v1       C 0 C 0
s dasNov3.JH570393               1727577 2 -   2296528 GT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79103591 2 -  85426708 I
e otoGar3.GL873538              19651002 0 -  27850971 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=183650.000000
s hg38.chr14_GL000009v2_random     25670 27 +    201709 AAATCCAAAGTTTCTTACCTATGCAAA
s panTro5.chr9                  41701660 17 + 116767853 AAATCCAAAGTTTCTTA----------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046082 27 - 114479721 AAATCCAAAGTTTCTTACCTATGCAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82692 27 -    416926 AAATCCAAAGTTTCTTACCTATGCAAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819689 27 + 122973662 AAATCCAAAGTTTCTTACATATGCAAA
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354369 27 +    434444 AAATCTAAAGTTTCTTACCTATGCAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401703 27 -    438202 AAATCTAAAGTTTCTTACCTATGCAAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451449 27 +  90373283 AAATCCAAAGTTTCTTACCTATGCAAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1501899 27 -   1547936 AAATCCAAAGTTTCTTAACTATGCAAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           16992 27 +    168452 AAATCCAAAGTTTCTTAACTATGCAAA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641414 25 -  72162052 AAATCC--AGTTTCTTACCTATGCAAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1059017 25 +   1314817 AAATCC--AGTTTCTTACCTATGCAAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6411886 25 -   6597006 AAATCC--AGTTTCTTACCTATGCAAA
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79103593 27 -  85426708 AAATCCAAAGTTGTTGACCTATACAAG
i canFam3.chr2                 I 2 C 0
s dasNov3.JH570393               1727579 27 -   2296528 AAATCCAAATCTATTTACCTATACAAC
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19651002  0 -  27850971 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=22920.000000
s hg38.chr14_GL000009v2_random     25697 2 +    201709 TG
s panPan2.chr13                 96046109 2 - 114479721 TG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82719 2 -    416926 TG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819716 2 + 122973662 TG
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354396 2 +    434444 TG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401730 2 -    438202 TG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451476 2 +  90373283 TG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1501926 2 -   1547936 TG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17019 2 +    168452 TG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641439 2 -  72162052 TG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1059042 2 +   1314817 TG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6411911 2 -   6597006 TG
i aotNan1.NW_018488791v1       C 0 C 0
s eulMac1.LGHX01018222v1           15765 2 +     23045 TG
i eulMac1.LGHX01018222v1       N 0 C 0
s eulFla1.LGHW01017480v1           15766 2 +     23046 TG
i eulFla1.LGHW01017480v1       N 0 C 0
s canFam3.chr2                  79103620 2 -  85426708 TG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1727606 2 -   2296528 TG
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19651002 0 -  27850971 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I
e panTro5.chr9                  41701677 0 + 116767853 C

a score=421194.000000
s hg38.chr14_GL000009v2_random     25699 43 +    201709 ACTTGTTTGC-TCTATTTTCTCATGAGCTTGGTAGATCCAGGAA
s panTro5.chr9                  41701677 40 + 116767853 ---TGTTTGC-TCTATTTTCTCATGAGCTTGGCAGATCCAGGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046111 34 - 114479721 ACTTG----------TTTTCTCATGAGCTTGGTAGATCCAGGAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82721 44 -    416926 ACTTGTTTGCTTCTATTTTCTCATGAGCTTGGTAGATCCAGGAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819718 44 + 122973662 ACTTGTTTGCTTCTATTTTCTCATGAGCTTGGTAGATCTAGGAA
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354398 44 +    434444 ACTTATTTGCTTCTATTTTCTCATGAGCTTCGTAGATCCAGCAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401732 44 -    438202 ACTTGTTTGCTTCTATTTTCTCATGAGCTTCGTAGATCCAGCAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451478 44 +  90373283 GCTTGTTTGCTTCTATTTTCTCATGAGCTTGGTAGATCCAGGAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1501928 44 -   1547936 ACTTGTTTGCTTCTATTTTCTCATGAGCTTGGTAGATCCAGGAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17021 44 +    168452 ACTTGTTTGCTTCTATTTTCTCATGAGCTTCATAAATCCAGGAA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641441 44 -  72162052 ACTTGTTCGATCCTGTTTTCTCATGTGCTTGATAGATCAAGGAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1059044 44 +   1314817 ACTTGTTTGATCCTATTTTCTCATGTGCTTGGTAGATCAAGGAA
i cebCap1.NW_016107851v1       C 0 I 23
s aotNan1.NW_018488791v1         6411913 44 -   6597006 ACTTGTTTGATCCTATTTTCTCATGTGCTTGGTAGATCAAGGAA
i aotNan1.NW_018488791v1       C 0 C 0
s eulMac1.LGHX01018222v1           15767 44 +     23045 ACTCGTTTGCTATTATTTCTTCATAAGCTTGATAGACCCAAAAA
i eulMac1.LGHX01018222v1       C 0 C 0
s eulFla1.LGHW01017480v1           15768 44 +     23046 ACTCGTTTGCTATTATTTCTTCATAAGCTTGATAGACCCAAAAA
i eulFla1.LGHW01017480v1       C 0 C 0
s otoGar3.GL873538              19651002 40 -  27850971 ACTTGTTTGCTCTTA----TTCATAAGCTTAGTAGATCTATGAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79103622 44 -  85426708 ACTTGTTTGCTGTTACTTCTTCATGAGCTTGGTAGATCCAAGAA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1727608 44 -   2296528 ACTTATTTACTCTTATTTCTTCATGAACTTAGTATATCCAAGAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=85645.000000
s hg38.chr14_GL000009v2_random     25742 9 +    201709 ACATAACTT
s panTro5.chr9                  41701717 9 + 116767853 ACAGAACTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046145 9 - 114479721 ACAGAACTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82765 9 -    416926 ACAGAACTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819762 9 + 122973662 GCAGAACTT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354442 9 +    434444 GCAGAACTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401776 9 -    438202 GCAGAACTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451522 9 +  90373283 GCAGAACTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1501972 9 -   1547936 GCAGAACTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17065 9 +    168452 GCAGAACTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641485 8 -  72162052 GCAAAACT-
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6411957 9 -   6597006 GCAAAACTT
i aotNan1.NW_018488791v1       C 0 I 15
s eulMac1.LGHX01018222v1           15811 9 +     23045 GCAGGACTT
i eulMac1.LGHX01018222v1       C 0 C 0
s eulFla1.LGHW01017480v1           15812 9 +     23046 GCAGGACTT
i eulFla1.LGHW01017480v1       C 0 C 0
s otoGar3.GL873538              19651042 9 -  27850971 GCAGGACTT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79103666 9 -  85426708 GCAGGACTT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1727652 9 -   2296528 ACAGGACTT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cebCap1.NW_016107851v1         1059088 23 +   1314817 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=84924.000000
s hg38.chr14_GL000009v2_random     25751 10 +    201709 TTAAAACAAA
s panTro5.chr9                  41701726 10 + 116767853 TTAAAACAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046154  9 - 114479721 TTAAAAC-AA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82774 10 -    416926 TTAAAACAAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819771 10 + 122973662 TTAAAACAAA
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354451 10 +    434444 TTAAAACAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401785 10 -    438202 TTAAAACAAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451531 10 +  90373283 TTAAAACAAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1501981 10 -   1547936 TTAAAACAAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17074 10 +    168452 TTAAAAGAAA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641493 10 -  72162052 TAAAAACAAA
i saiBol1.JH378105             C 0 C 0
s eulMac1.LGHX01018222v1           15820 10 +     23045 TTAAAACAAA
i eulMac1.LGHX01018222v1       C 0 I 1997
s eulFla1.LGHW01017480v1           15821 10 +     23046 TTAAAACAAA
i eulFla1.LGHW01017480v1       C 0 I 1997
s otoGar3.GL873538              19651051 10 -  27850971 TTAAAACAAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79103675 10 -  85426708 TAAAAACAAA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1727661 10 -   2296528 TCAAACTGAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411966 15 -   6597006 I
e cebCap1.NW_016107851v1         1059088 23 +   1314817 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=8281.000000
s hg38.chr14_GL000009v2_random     25761 1 +    201709 A
s panTro5.chr9                  41701736 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046163 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82784 1 -    416926 A
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819781 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354461 1 +    434444 A
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401795 1 -    438202 A
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451541 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1501991 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17084 1 +    168452 A
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641503 1 -  72162052 A
i saiBol1.JH378105             C 0 I 3
s otoGar3.GL873538              19651061 1 -  27850971 A
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79103685 1 -  85426708 A
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1727671 1 -   2296528 A
i dasNov3.JH570393             C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411966 15 -   6597006 I
e cebCap1.NW_016107851v1         1059088 23 +   1314817 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=-1945.000000
s hg38.chr14_GL000009v2_random     25762 1 +    201709 -T
s panTro5.chr9                  41701737 1 + 116767853 -T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046164 1 - 114479721 -T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82785 1 -    416926 -T
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819782 1 + 122973662 -T
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354462 1 +    434444 -T
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401796 1 -    438202 -T
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451542 1 +  90373283 -T
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1501992 1 -   1547936 -T
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17085 1 +    168452 -T
i colAng1.NW_012121088v1       C 0 C 0
s otoGar3.GL873538              19651062 1 -  27850971 -C
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79103686 1 -  85426708 -C
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1727672 1 -   2296528 G-
i dasNov3.JH570393             C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411966 15 -   6597006 I
e cebCap1.NW_016107851v1         1059088 23 +   1314817 I
e saiBol1.JH378105              64641504 3 -  72162052 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=33761.000000
s hg38.chr14_GL000009v2_random     25763 8 +    201709 CCCCATAT
s panTro5.chr9                  41701738 8 + 116767853 CCCCATAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046165 8 - 114479721 CCCCATAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82786 8 -    416926 CCCCATAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819783 8 + 122973662 CCCCAAAT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354463 8 +    434444 CCCCAAAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401797 8 -    438202 CCCCAAAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451543 8 +  90373283 CCCCAAAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1501993 8 -   1547936 CCCCAAAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17086 8 +    168452 CCCCAAAT
i colAng1.NW_012121088v1       C 0 C 0
s canFam3.chr2                  79103687 8 -  85426708 ACCTATAG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1727673 8 -   2296528 ACCTAAAT
i dasNov3.JH570393             C 0 I 42
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411966 15 -   6597006 I
e otoGar3.GL873538              19651063 0 -  27850971 C
e cebCap1.NW_016107851v1         1059088 23 +   1314817 I
e saiBol1.JH378105              64641504 3 -  72162052 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=8909.000000
s hg38.chr14_GL000009v2_random     25771  7 +    201709 AT----------------------Tgctg
s panTro5.chr9                  41701746  7 + 116767853 GT----------------------Tgctg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046173  7 - 114479721 GT----------------------TCctg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82794  7 -    416926 GT----------------------ggctg
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819791  7 + 122973662 GT----------------------ggcca
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354471 29 +    434444 GTGGCTGGGCGTGGTGGCTTGTGCggctg
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401805  7 -    438202 GT----------------------ggctg
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451551  7 +  90373283 GT----------------------ggcag
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1502001  7 -   1547936 GT----------------------ggccg
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17094  7 +    168452 GT----------------------ggctg
i colAng1.NW_012121088v1       C 0 C 0
s canFam3.chr2                  79103695  7 -  85426708 GC----------------------TCCTG
i canFam3.chr2                 C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411966 15 -   6597006 I
e otoGar3.GL873538              19651063  0 -  27850971 C
e dasNov3.JH570393               1727681 42 -   2296528 I
e cebCap1.NW_016107851v1         1059088 23 +   1314817 I
e saiBol1.JH378105              64641504  3 -  72162052 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1032116.000000
s hg38.chr14_GL000009v2_random     25778 303 +    201709 ggtgtggtggctagtgcctgtaat-ccagcactttgggagtctgaggcgggcagataacctgaggttgggagtttgagaccagcctgaccaacatggagaaacccatctctactaaaaacacaaaattagctgttcatggtggcacatgcctgtaattccagctactagggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgccatgagctaagatcacaccactgcacttcagactgggcaggaagagtgaaattc-----catctca----aaaaacaaaaaCAACCACAACCACAAC
s panTro5.chr9                  41701753 304 + 116767853 ggtgcggtggctagtgcctgtaatcccagcactttgagaggctgaggcgggcagataacctgaggttgggagtttgagaccagcctgaccaacatggagaaacccatctctactaaaaacacaaaattagctgttcatggtggcacatgcctgtaattccagctacttgggaggccgaggcaggagaatcgcttgaacccaggaggcagaggttgccatgagcagagatcacaccactgcacttcagactgggcaggaagagtgagactc-----catctca----aacaacaacaaccaccacaaccacaac
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046180 300 - 114479721 ggtgcggtggcttgtgcctgtaatcccagcactttgggaggctgaggcgggcagataacctggggttgggagtttgagaccagcctgaccaacatggagaaacctatctctactaaaaacacaaaattagctgttcatggtggcacatgcctgtaattccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgccatgagctgagatcacaccactgcacttcagactgggcaggaagagtgaaattc-----catctca----aacaacaacca----cacaacaacaac
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           82801 306 -    416926 ggcg-ggtggctcgtgcctgtaatcccagcactttgggaggctgaggcgggcagataacctgaggttgggagtttgagaccagcctgaccaacatggagaaacacatctctactaaaaacacaaaattagctg-gcatggtggcacatacctgtaattccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcagcagttgtggtgagctgagattgcaccactgcacttcagcctgggcagcaagagtgaaactc-----caacacaaaacaacaacaacaacaacaacaacagcaac
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40819798 303 + 122973662 ggagcagtggctcacgcctgtaatcccagcactttgggaggccaaggccggtggataacctgaggttgggagtttgagaccatcctgaccaacatggagtaacccatctctactaaaaatacaaaagtaactgggcatggtggcacatgcctgtaatcccagttactcaggaggctgaggcaggagaatagcttgaatctgagaggcagaggttgtggtgagctgagatcacactattgcacttcagcct-ggcagcaagagtgatattc-----catctca----aacaacaacaacaacaacaacgacaac
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354500 304 +    434444 ggcgtggtggcttgtgcctgtaatcccagcactttgggaggccgaggtgggcggataacctgagtttgggagtttgagaccatcctgaccaacatggagtaacccatctctactaaaaatacaaaagtagctgggcatgatggcacatgcctgtaatcccagttactcgggaggctgaggcaggagaatagcttgaactcgagaggcagaggttgcggtgagctgagatcgcaccattgcacttcagcctgggcagcaagagtgaaactc-----catctcT----AACAACAGCAACAACCATGACCACCAC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          401812 304 -    438202 ggtgtggtggcttgtgcctgtaatcccagcactttgggaggccgaggtgggcggataacctgagtttgggagtttgagaccatcctgaccaacatggagtaacccatctctactaaaaatacaaaagtagctgggcatgatggcacatgcctgtaatcccagttactcgggaggctgaggcaggagaatagcttgaactcgagaggcagaggttgcagtgagctgagatcacaccattgcacttcagcctgggcagcaagagtgaaactc-----catctcT----AACAACAGCAACAACCATGACCACCAC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451558 309 +  90373283 ggcgtggtggcttgtgcctgtaatcccagcactttgggaggccgaggtgggcggataacctgagtttgggaatttgagaccatcctgaccaacatggagtaacccatctctactaaaaatacaaaagtagctgggcatgatggcacatgcctgtaattccagcaacttgggaggctgaggcaggagaatagcttgaacccgagaggcagaggttgcggtgagctgagatggcaccattgcacttcagcctgggcagcaagagcgaaactccatctcaTCTCT----Aacaacaacaaccaccacgaccaccac
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1502008 304 -   1547936 ggcatggtggcttgtgcccataaccccagcactttgggaggccgaggtgggcggataacctgagtttgggagtttgagaccatcctgaccaacatggagtaacccatctctactaaaaatacaaaagtagctgggcatgatggcacatgcctgtaatcccagttactcgggaggctgaggcgggagaatagcttgaactcgagaggcagaggttgcggtgagctgagatcgcaccattgcacttcagcctgggtagcaagagcaaaactc-----catctcT----Aacaacaaccaccaccacgaccaccac
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17101 296 +    168452 ggcgccgtggctcgtgggcataattccagcactttgggagtctgaggcaggcagataacctgaggttgggagtttgagaccagcctgaccaacatagagaaacccatctctactaaaaacacaaaattagctggccatgatggcacatgcctgtaattgcgggtacttgggaggctgaggcaggagaatctcttgaacctgggaggcagaggttgcagtgagctgagatggcaccactgcactccagcctggacagcaagagcaaaactc-----catctca----aacaacaacaacaacaaca--------
i colAng1.NW_012121088v1       C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411966  15 -   6597006 I
e canFam3.chr2                  79103702   0 -  85426708 C
e otoGar3.GL873538              19651063   0 -  27850971 C
e dasNov3.JH570393               1727681  42 -   2296528 I
e cebCap1.NW_016107851v1         1059088  23 +   1314817 I
e saiBol1.JH378105              64641504   3 -  72162052 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=14973.000000
s hg38.chr14_GL000009v2_random     26081 10 +    201709 AACCACCACA---
s panTro5.chr9                  41702057 10 + 116767853 aaccaccaca---
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046480 10 - 114479721 aaccaccaca---
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           83107 10 -    416926 aacCACCACA---
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820101  1 + 122973662 a------------
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354804  7 +    434444 ---CACCACA---
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402116  7 -    438202 ---CACCACA---
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451867  7 +  90373283 ---caccacA---
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1502312  7 -   1547936 ---caccacA---
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17397  6 +    168452 ----accaca---
i colAng1.NW_012121088v1       C 0 C 0
s canFam3.chr2                  79103702 10 -  85426708 ---TACCACAAGA
i canFam3.chr2                 C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411966 15 -   6597006 I
e otoGar3.GL873538              19651063  0 -  27850971 C
e dasNov3.JH570393               1727681 42 -   2296528 I
e cebCap1.NW_016107851v1         1059088 23 +   1314817 I
e saiBol1.JH378105              64641504  3 -  72162052 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=7558.000000
s hg38.chr14_GL000009v2_random     26091 2 +    201709 AA
s panTro5.chr9                  41702067 2 + 116767853 GA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046490 2 - 114479721 GA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           83117 2 -    416926 AA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820102 1 + 122973662 -a
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354811 2 +    434444 AA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402123 2 -    438202 AA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451874 2 +  90373283 AA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1502319 2 -   1547936 AA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17403 2 +    168452 aa
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641507 1 -  72162052 -A
i saiBol1.JH378105             I 3 C 0
s canFam3.chr2                  79103712 2 -  85426708 AA
i canFam3.chr2                 C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411966 15 -   6597006 I
e otoGar3.GL873538              19651063 0 -  27850971 C
e dasNov3.JH570393               1727681 42 -   2296528 I
e cebCap1.NW_016107851v1         1059088 23 +   1314817 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=7098.000000
s hg38.chr14_GL000009v2_random     26093 1 +    201709 A
s panTro5.chr9                  41702069 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046492 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           83119 1 -    416926 A
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820103 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354813 1 +    434444 A
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402125 1 -    438202 A
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451876 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1502321 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17405 1 +    168452 a
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641508 1 -  72162052 A
i saiBol1.JH378105             C 0 I 1
s otoGar3.GL873538              19651063 1 -  27850971 A
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79103714 1 -  85426708 A
i canFam3.chr2                 C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6411966 15 -   6597006 I
e dasNov3.JH570393               1727681 42 -   2296528 I
e cebCap1.NW_016107851v1         1059088 23 +   1314817 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1006691.000000
s hg38.chr14_GL000009v2_random     26094 147 +    201709 CCCAAATGCATTTCCTTGGCACAGTAAAAC--TGAAA-AGAAAAAGGGTAAAGTAAATACAAGTAA-CTGAAAGAGTTTATGTATATTATTTTACTTCTCATTTGATAAAATTTGTAAAGTAATGAGCAGAGTGTATTTCTTCAGGGACCC
s panTro5.chr9                  41702070 148 + 116767853 CCCAAATGCATTTCCTTGGCACAGTAAAAC--TGAAACAGAAAAAGTGTAAAGTAAATACAAGTAA-CTGAAAGAGTTTATGTATATTATTTTACTTCTCATTTGATAACATTTGTAAAGTAATGAGCAGAGTGTATTTCTCCAGGGACCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046493 148 - 114479721 CCCAAATGCATTTCCTTGGCACAGTAAAAC--TGAAACAGAAAAAGTGTAAAGTAAATACAAGTAA-CTGAAAGAGTTTATGTATATTATTTTACTTCTCATTTGATAACATTTGTAAAGTAATGAGCAGAGTGTATTTCTCCAGGGACCC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           83120 148 -    416926 CCCAAATGCATTTCCTTGGCACAGTAAAAC--TGAAACAGAAAAAGTGTAAAGTAAATACAAGTAA-CTGAAACAGTTTATGTATATTATTTTACTTCTCATTTGATAAAATTTGTAAAGTAATGAGCAGAGTGTATTTCTCCAGGGACCC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820104 148 + 122973662 CCCAAATGCATTTTCTTGGCACAGTAAAGC--TGAAACAGAAAAAGTGTAAAGTAAATACAAGTAA-CCAAAACAGTTTATGTATATTATTTTACTTCTCATTTGATAACTTTTGTAAAGTAATGAGCAGAATGTATTTCTCCAGGGACCC
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354814 148 +    434444 CCCATATGCATTTTCTTGGCACAGTAAAAC--TGAAACAGAAAAAGTATCAAGTAAATACAAGTAA-CTGAAACAGTTTATGTGTGTTATTTTACTTCTCATTTGATAATTTTTGTAAAGTAATGAGCAGCATGTATTTCTTTGGGGACCC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402126 148 -    438202 CCCAAATGCATTTTCTTGGCACAGTAAAAC--TGAAACAGAAAAAGTATCAAGCAAATACAAGTAA-CTGAAACAGTTTATGTGTGTTATTTTACTTCTCATTTGATAATTTTTGTAAAGTAATGAACAGCATGTAATTCTTTGGGGACCC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66451877 148 +  90373283 CCCAAATGCATTTTCTTGGCACAGTAAAAC--TGAAACAGAAAAAGTGTAAAGTAAATAGAAGTAA-CTGAAACAGTTTATGTGTATTATTTTACTTCTCATTTGATAATTTTTGTAAAGTAATGAGCAGAATGTATTTCTTTGGGGACCC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1502322 148 -   1547936 CCCAAATGCATTTTCTTGGCACAGTAAAAC--TGAAACAGAAAAAGTATAAAGTAAATACAAGTAA-CTGAAACAGTTTATGTGTATTATTTTACTTCTCATTTGATAATTTTTGTAAAGTAATGAGCAGAATGTATTTCTTTGGGGACCC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17406 148 +    168452 cCCAAATGCATTTCCTGCGCACGGTAAAAC--TGAAACAGAAAAAGTGTAAAGTAAAAAGAAGTAA-CTGAAACAGTTTATGTAGATTAATTTACTTCTCATTTGATAAAGTTTGTAAAGTAATGAGCAGAGCGTATTGCTCCAGGGACCC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641510 147 -  72162052 CCCAAATGCATTTCCTCAGTACAGTAAGAC--TGAAACAGAAAAAGTATACAGT-AATACAAGTAA-CTGAAGCAGTTTATGTATATTACTTTACTTCTCATTTGATAACTTTTGTAAAGTAATGAGCAGAGTATATTTCTCCAGGGACCC
i saiBol1.JH378105             I 1 C 0
s cebCap1.NW_016107851v1         1059111 148 +   1314817 CCCAAATGCATTTCCTCAGTCCAGTAAGAC--TGAAACCGAAAAAGTATACAGTAAATACAAGTAA-CTGAAGCAGTTTATGTATGTTATTTTACTTCTCATTTGATAACTTTTGTAAAGTAATGAGCAGAGTGTATTTCTCCAGGGACCC
i cebCap1.NW_016107851v1       I 23 C 0
s aotNan1.NW_018488791v1         6411981 148 -   6597006 CCCAAATGCATTTCCTCAGTACAGTAAGAC--TGAAACAGAAAAAGTATACAGTAAATACATGTAA-CTGAAACAGTTTATGTATGTTATTTTACTTCTCATTTGATAACTTTTATAAAGTAATGAGCAGAGTGTATTTCTCCAGGGACCC
i aotNan1.NW_018488791v1       I 15 C 0
s otoGar3.GL873538              19651064 123 -  27850971 CTTAAATTAGTTCCTTCAAGACAGGAAGACA-TGAAACAGGAGAATTACAAAGTAAACATGAAAAG-CTTATCCAGTTCATGGAGA-TAATTCACTTCTCGTTTGATACTTTTCTTAAA-------------------------AAGAACT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79103715 114 -  85426708 ------------------------------TGTGAAATAGAAAAATCACAAAATAAATACAAGCAATTTAAAACAGCTCATGTAAATTATTT--CTTTTCACTTGATGCCTTTTATAAAGTCATGAACA-----CAATTCCCCAGGGACCC
i canFam3.chr2                 C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1727681  42 -   2296528 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1114687.000000
s hg38.chr14_GL000009v2_random     26241 151 +    201709 AGATATATACATTTATTTATTC-------AATAGAAATTCATTCTTATAATGGCCACTGATA--CCTATATCCTAAATA-TTTCTGAAAACA---TCTC-----CTCAGGCCTGCATCAC-----C-----TTTGCAACATTGCCTTATATTTTATC------------TTTGTTCATTGATTTATATGCC
s panTro5.chr9                  41702218 151 + 116767853 AGATATATACATTTATTCATTC-------AATAGAAATTCATTCTTATAATGGCCACTGATA--CCTATATCCTAAATA-TTTCTGAAAACA---TCTC-----CTCAGGCCTGCATCAT-----C-----TTTGCAACATTGCCTTATATTTTATC------------TTTGTTCATTGATTTATATGCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96046641 151 - 114479721 AGATATATACATTTATTCATTC-------AATAGAAATTCATTCTTATAATGGCCACTGATA--CCTATATCCTAAATA-TTTCTGAAAACA---TCTC-----CTCAGGCCTGCATCAT-----C-----TTTGCAACATTGCCTTATATTTTATC------------TTTGTTCATTGATTTATATGCC
i panPan2.chr13                C 0 T 50562
s gorGor5.CYUI01015896v1           83268 151 -    416926 AGATATATACATTTATTCATTC-------AATAAAAATTCATTCTTATAATGGCCACTGATA--CTTATATCCTAAATA-TTTCTGAAAACA---TCTC-----CTCAGGCCTGCATCAT-----C-----TTTGCAACACTGCCTTATATTTTATC------------TTTGTTCATTGATTTATATGCC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820252 151 + 122973662 AGATATATACATTTATTCATTC-------AGTACAAATTCATTCTTATAATGGCCACTGATA--CTTATATTCTAAATA-TTTCTAAAAACA---TCTT-----CTCAGGCCTGCATCAT-----C-----TTTGCAACATTGCCTTATATTTTATC------------TTTGTTCATTTATTTATATGCC
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          354962 151 +    434444 AGATATATATATTTATTCATTC-------AATAAAAATTCATTCTTATAATGGCCACTGATA--CTTATATTCTAAATA-TTTCTAAAAACA---TCTC-----CTCAGACCTGCATCAT-----C-----TTTGCAACATTGCCTTATGTTTTATC------------TTTGTTCATTTGTTTATGTGTC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402274 151 -    438202 AGATATATATATTTATTCATTC-------AATAAAAATTCATTCTTATAATGGCCACTGATA--CTTATATTCTAAATA-TTTCTAAAAACA---TCTC-----CTCAGACCTGCATCAT-----C-----TTTGCAACGTTGCCTTATATTTTATC------------TTTGTTCATTTATTTATATGCC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66452025 151 +  90373283 AGATATATATATTTATTCATTC-------AATAAAAATTCATTCTTATAATGGCCACTGATA--CTTATATTCTAAATA-TTTCTAAAAACA---TCTC-----CTCAGACCTGCATCAT-----C-----TTTGCAACATTGCCTTACATTTTATC------------TTTGTTCATTTATTTATATGCC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1502470 151 -   1547936 AGATATATATATTTATTCTTTC-------AATAAAAATTCATTCTTATAATGGCCACTGATA--CTTATATTCTAAATA-TTTCTAAAAACA---TCTC-----CTCAGACCTGCATCAT-----C-----TTTGCAATATTGCCTTATATTTTATC------------TTTGTTCATTTATTTATATGCC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17554 147 +    168452 AGATATATACATTTATTCATTC-------AGTAAAAATCCATTCTTATAATGACTACT-ATA--CTTACATCCTAAATA-TTTCTGAAAACA---T--------TTCAGGCCTGCATCAT-----C-----TTTGCAACATTGCCTTATGTTTTATC------------TTTGTTCATTTGTTTATGTGTC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641657 153 -  72162052 AGATATATGCATTTATTCATTC-------AATAAAAATTTATTCTTATAATGACTACTGACA--CTTATATCCTCAATA-TTTCTGAAAACA---TCTC---AGTTCAGGCCTGCATCAA-----C-----TTTGCAACATTACCTTACATTTTATC------------TTTGTTCATTTATTTATATGCC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1059259 156 +   1314817 AGATATATATATTTCTTCATTC-------AATAAAAATTTATTCTTATAGTGACTACTGATA--CTTATATCCTAAATA-TTTCTGAAAATATCTTCTC---AGTTCAGGCCTGCATCAA-----C-----TTTGCGACATTGCCTTACATTTTATC------------TTTGTTCATTTATTTATATGCC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6412129 156 -   6597006 AGATATATACATTTATTCATTC-------AATAAAAATTTATTCTTATAGTGACTACTGATA--CTTATATCCTAAATA-TTTCTGAAAACATCTTCTC---AGTTCAGGCCTGCATCAA-----C-----TTTGCAACATTGCCTTACATTTTATC------------TTTGTTCATTTATTTATACGAC
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19651187 163 -  27850971 AGATTTGTACATTTATTCATTCAATATTTAATAAAAACTCATTC-TATACTGACCACTGATA-TTTTATATCCTAAATA-TTTCTGGGAACA---TTTCTTCAGTTCAGATTTGCATCATCTTAAC-----TTTGCAATACTGCATTCTAATTTAGC------------TCCTCTGA--AATTCGTCC---
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79103829 161 -  85426708 AGGATTGT-TGTTGATTCACTT-------AATAGAGGTTTATTC-TGTACTGAGCCCTGATAATTTTATATTCTGAATA-TTTctggaacca---ttctgtcagttcaggtgtgtatcat-----ctttgttttgcattcctgccttctaattcatc------------tcctgtcttttattacagtgcc
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1727723 171 -   2296528 AAATAAACACA---AGTGACTT-------AAAATCATTTTTTTTTTGCTGTGGTCACTGATA--ATTTTATCCTCAATATTTTTTGGAATTA---TTCCCTCATttcaggcctgtgtcat-----ctttattttgcacagttgccttctaattaatctccttttattcttttattcttttattcttgtgcc
i dasNov3.JH570393             I 42 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=729172.000000
s hg38.chr14_GL000009v2_random     26392 95 +    201709 TCATAATTTTATGCTCCTCACAGTATTTAGAGTGAATTATCCTTAATGCAAATAGATCCGTGAACCACTCCTGAATAC----CTAATGTCCAAGCATCT
s panTro5.chr9                  41702369 95 + 116767853 TCAGAATTTTATGCTCCTCACAGTATTTAGAGTGAATTATCCTTAATGCAAATAGATCCGTGAACCACTCTTGAATAC----CTAATGTCTAAGCATCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 95996230 95 - 114479721 TCAGAATTTTATGCTCCTCACAGTATTTAGAGTTAATTATCTCTAATGTAAATAGATCCATGAACCACTCCTGAATAC----CTAATGTCCAAGCATCT
i panPan2.chr13                T 50562 I 51569
s gorGor5.CYUI01015896v1           83419 92 -    416926 TCAGAATTTTATGCTCCTCACA-TA-TTAGAGTTAATTATCTCTAATGCAAATAGATCTGTGAACCACTCCTGAATAC----CT-ATGTCCAAGCATCT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820403 95 + 122973662 TCAGAATTTTATGCTCCTCGCAGTATTTAGAGTTAATTATCTCTAATACAAATACATCTGTGAACCACTCCTGAATAC----CTAATGTCCAAGCATCT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          355113 95 +    434444 TCAGAATTTTATGCTCCTCACAGTATTTAGAGTTAATTATCTCTAATGTAAATAGATCTGTGAACCACTCCTGAATAC----CTAATGTCCAAGCATAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402425 95 -    438202 TCAGAATTTTATGCTCCTCACAGTATTTAGAGTTAATTATCTCTAATGCAAATAGATCCGTGAACCACTCCTGAATAC----CTAATGTCCAAGCATAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66452176 93 +  90373283 TCAGAATTTTATGCTCCTCACAGTATT--GAGTTAATTATCTCTAATGTAAATAGATCTGTGAACCACTCCTGAATAC----CTAATGTCCAAGCATAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1502621 95 -   1547936 TCAGAATTTTATGCTCCTCACAGTATTTAGAGTTAATTATCTCTAATGTAAATAGATCTGTGAACCACTCCTGAATAC----CTAATGTCCAAGCATAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17701 95 +    168452 TCAGAATTTTATGCTCCTCACAGTATTTAGAGTTAATTATCTCTAATGCAAATAGATCCGTGAACCACTCCTGAATAC----CTAATGTCTAAGCATCT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641810 96 -  72162052 TCTGAATTTTCTGCTCCTTATAGCATTTAGAGTTAATTATCTCTAATGCAAATAGATCTGTGAACCATTCTTGAATAC---ATTAATGTCCAAGCATCT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1059415 96 +   1314817 TCTGAATTTTCTGCTCCTCATAGCATTTAGAGTTAATTATCTCTAATGCAAATAGATCTGTGAACCATTCTTGAATTC---ATTAATGTCCAAGCATCT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6412285 96 -   6597006 TCTGAATTTTCTGCTCCTCATAGCATTTAGAGTTAATTATCTCTAATGCAAATAGATCTGTGAACCATTCTTGAATAC---ATTAATGTCTAAGCATCT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19651350 99 -  27850971 TCTGAATTTCGTCCTCCCCACAGCACTTGGAGTGGTCTGTCTCCAGTATAAGTAGGACCACGAACCACTCTTGATTAAAACACTTACATCCAAGCATCT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79103991 98 -  85426708 ctcaaattcatccctccccaccgcatttacagtgatctgtctcaaatgtatatatgaccatgaaccactgttgaaaac-atatttgtgtccaggcatct
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1727894 98 -   2296528 tctcaaatttatccttccctcagcatttagagagatctctctcaaatgcaaatatggccatgaaccactgtttaaaac-atattcatgtctgagcatct
i dasNov3.JH570393             C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=41850.000000
s hg38.chr14_GL000009v2_random     26487 4 +    201709 TAAA
s panTro5.chr9                  41702464 4 + 116767853 TAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96047894 4 - 114479721 TAAA
i panPan2.chr13                I 51569 C 0
s gorGor5.CYUI01015896v1           83511 4 -    416926 TAAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820498 4 + 122973662 TAAA
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          355208 4 +    434444 TAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402520 4 -    438202 TAAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66452269 4 +  90373283 TAAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1502716 4 -   1547936 TAAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17796 4 +    168452 TAAA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641906 4 -  72162052 TAAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1059511 4 +   1314817 TAAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6412381 4 -   6597006 TAAA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19651449 4 -  27850971 TAAA
i otoGar3.GL873538             C 0 I 6
s canFam3.chr2                  79104089 4 -  85426708 taaa
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1727992 4 -   2296528 taaa
i dasNov3.JH570393             C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=94245.000000
s hg38.chr14_GL000009v2_random     26491 17 +    201709 GGTTTATATAAGGATTT
s panTro5.chr9                  41702468 17 + 116767853 GGTTTATATAACGATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96047898 17 - 114479721 GGTTTATATAAGGATTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           83515 17 -    416926 GTTTTATATAAGGATTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820502 17 + 122973662 GGTTTACATAAGGCATT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          355212 17 +    434444 GGTTTATATAAGGCTTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402524 17 -    438202 GGTTTATATAAGGCTTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66452273 17 +  90373283 GGTTTATATAAGGCTTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1502720 17 -   1547936 GGTTTATATAAGGCTTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17800 15 +    168452 GG--TATATAAGGATTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641910 17 -  72162052 GGTTTATAGAAGGCTTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1059515 17 +   1314817 GATTTATAGAAGGTTTT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6412385 17 -   6597006 GGTTTATAGAAGGCTTT
i aotNan1.NW_018488791v1       C 0 C 0
s dasNov3.JH570393               1727996 17 -   2296528 attacatacaagaactt
i dasNov3.JH570393             C 0 I 6
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79104093  0 -  85426708 C
e otoGar3.GL873538              19651453  6 -  27850971 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=855229.000000
s hg38.chr14_GL000009v2_random     26508 134 +    201709 CAGAAACTGACTTCTGggttgggcaaggtggctcatgtctgtgatcccagcactttgggaggctgaagcaagtggatcatttgaggtcaggagttcaagaccagcctggccaacaaggtgaaaccccatctcta
s panTro5.chr9                  41702485 134 + 116767853 CAGAAACTGACTTCTGggttgggcacggtggctcatgtctgtgatcccagcactttgggaggctgaggcaagtggatcatttgaggtcaggagttcaagaccagcctggccaacaaggtgaaaccccaactcta
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96047915 134 - 114479721 CAGAAACTGACTTCTGggttgggcacggtggctcatgtctgtgatcccagcactttgggaggctgaggcaggtgaatcatttgaggtcaggagttcaagaccagcctggccaacaaggtgaaaccccatctcta
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           83532 134 -    416926 CAGAAACTGATTTCTGggttgggcatggtggctcatgtctataatcccagcactttgggacgctgaggcaggtggatcatttgaggtcaggagttcaagaccagcctggccaacaaggcgaaaccccatctcta
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820519 134 + 122973662 CAGAAACTGACTTCTGAGTTgggcacggtggctcatgtctgtaatcccagcactttgggaggctggggcagctggatcatttgaggtcaggagttcaagaccagcctggccaacgtggtgaaaccccatgtcta
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          355229 134 +    434444 CAGAAACTGACTTCTGggttgggcacggtggctcatgtctgtaatcccagcactttgggaggctgaggcaggtggacgatttgaggtcaggagttcgagaccagcctggccaacatggtggaaccccatctcta
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402541 134 -    438202 CAGAAACTGACCTCTGggttgggcacggtggctcatgtctgtaatcccagtactttgggaggctgaggcaggtggacgatttgaggtcaggagttcgagaccagcctggccaacatggtggaaccccatctcta
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66452290 134 +  90373283 CAGAAACTGACTTCTGggttgggcacggtggctcatgtctgtaatcccagcactttgggaggctaaggtgggtggacgatttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctcta
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1502737 134 -   1547936 CAGAAACTGACTTCTGggttgggcacggtagctcatgtctgtaatcccagcactttgggaggctgaggcgggtggacgatttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctcta
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17815 134 +    168452 CAGAAACTGATTTCTGggttgggcatggtggctcatgtctgtaatcccagaacttcagaaggctgaggcaggtggatcatttgaggtcaggagttcaagatgagcctgctcaaacaggtaaaaccccatctcta
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64641927 134 -  72162052 CAGAAACTGACTTCTGggctgggtgtggtggctcatgtctgtaatcccagcactttgggaggccaaggtaggtggatcatttgagttcaggagttcaagatcagcctagccaacatggtgaaaccctgtctcta
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1059532 134 +   1314817 CAGAAACTGACTTCTGggctgggtgcagtggctcttgtctgtaatcccagcactttgggaggccaaggcaggtggatcatttgagttcaggagttcaagaccagcctagccaacacggtgaaaccctgtctcta
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6412402 134 -   6597006 CAGAAACTGACTTCTGggctgggtgcagtggctcgtgtctgtaatcccagcactttgggaggccgaggcagggggatcatttgagttcaggagttcaagatcagcctagccaacatggtgaaaccctgtctcta
i aotNan1.NW_018488791v1       C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79104093   0 -  85426708 C
e otoGar3.GL873538              19651453   6 -  27850971 I
e dasNov3.JH570393               1728013   6 -   2296528 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=255666.000000
s hg38.chr14_GL000009v2_random     26642 47 +    201709 at-aaaatacaaaaattagcaggtggtagtggcacgcgcctgtaatct
s panTro5.chr9                  41702619 47 + 116767853 at-aaaatacaaaaattagcaggtggtagtggcacgtgcctgtaatct
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96048049 47 - 114479721 at-aaaatacaaaagttagcaggcggtagtggcacgtgcctgtaatct
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           83666 47 -    416926 at-agaatacaaaaattagcaggtggtaatggcacatgcctgtaatct
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820653 48 + 122973662 ctaaaaatacaaaaattagcaggtggtactggcatgcacctgtagtct
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          355363 48 +    434444 ctaaaaatacaaaaattagcaggtggtactggcacccgccggtaatct
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402675 48 -    438202 ctaaaaatacaaaaattagcaggtggtactggcacccgccggtaatct
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66452424 47 +  90373283 ct-aaaatacaaaaattagcaggcggtactggcacccgccggtaatct
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1502871 48 -   1547936 ctaaaaatacaaaaattagcaggcggtactggtacccgccggtaatct
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           17949 48 +    168452 ataaaaatacaaaaattagcaggtggtagtggcacacacctgtaatct
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64642061 48 -  72162052 ctaaaaatacaaaaattagcaggcaatagtggcatgtgcctgtaatcc
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1059666 48 +   1314817 ctaaaaatacaaaaattagcaggcaatagtggcatgtgcctgtaatcc
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6412536 48 -   6597006 ctaaaaatacaaaaattagcaggcaatagtggcatgtgcctgtagtcc
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79104093 25 -  85426708 at-tacatacaaagctt----------------------tcataatct
i canFam3.chr2                 C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19651453  6 -  27850971 I
e dasNov3.JH570393               1728013  6 -   2296528 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=738578.000000
s hg38.chr14_GL000009v2_random     26689 132 +    201709 cagctactcaggaggctgatgcaggagaattacttgaacctgggaggccgggttgcagtgagctgagatcatgccactgccctccagtctgggagacagag-tataaccttgtcccaaa-aaa--------gaaaaggaaag
s panTro5.chr9                  41702666 132 + 116767853 cagctactcaggaggctgaggcaggagaattacttgaacctgggaggctgggttgcagtgagctgagatcatgccactgccctccagtctgggagacagag-tatgaccttgtcccaaa-aaa--------gaaaagaaaag
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96048096 131 - 114479721 cagctactcaggatgctgaggcaggagaattacttgaacctgggaggctgggttgcagtgagctgagatcatgctactgctctccagtctgggagacagag-taagactttgtcccaaa-aaa--------gaaaag-aaag
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           83713 131 -    416926 cagctacttgggaggctgaggcaggagaattgcttgaacctgggaggccgggttgcagtgagccaagatcatgccactg-gctccagtctgggagacagag-taagaccttgtcccaaa-aaa--------gaaaagaaaag
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820701 133 + 122973662 cagctattcgggaggctgaggcaggagaattgcttgaacctgggaggccaggttgcggtgagccaagatcatgccactgcactccagtctgggagacagag-aaagaccttgtctcaaagaaa--------gaaaagaaaaa
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          355411 132 +    434444 cagctctttgggaggctgaggcaggagaattgcttgaacctgggaggccgggttgcagtgagccgagatcatgccactgcactgcagtctgggagacagag-taagaccttgtctcaaaaaaa--------gaaaagaaaa-
i macNem1.NW_012012823v1       C 0 I 1
s cerAty1.NW_012002921v1          402723 132 -    438202 cagctctttgggaggctgaggcaggagaattgcttgaacctgggaggccgggttgcagtgagccgagatgatgccactgcactgcagtctgggagacagag-taagaccttgtctcaaaaaaa--------gaaaagaaaa-
i cerAty1.NW_012002921v1       C 0 I 1
s chlSab2.chr2                  66452471 132 +  90373283 cagctctttgggaggctgaggcaggagaattgcttgaacctgggaggccgggttgcagtgagccgagatcatgccactgcactgcagtgtgggagacagag-taagaccttgtctcaaaaaaa--------gaaaagaaaa-
i chlSab2.chr2                 C 0 I 1
s manLeu1.NW_012105442v1         1502919 132 -   1547936 cagctctttgggaagctgaggcaggagaattgcttgaacctgggaggccgggttgcagtgagccaagatcattccactgctctccagtctgggagacagag-taagaccttgtctcaaaaaaa--------gaaaagaaaa-
i manLeu1.NW_012105442v1       C 0 I 1
s colAng1.NW_012121088v1           17997 140 +    168452 cagctactcgggaggctaaggcaggagaactgcttgaacccgggaggccaggttgcagtaagccaagatcattccactgcactccagtctgggagacagtg-taagaccttgtctcaaaaaaaaaagaaaggaaaagaaaa-
i colAng1.NW_012121088v1       C 0 I 1
s saiBol1.JH378105              64642109 132 -  72162052 cagctac-caggaggctggggcaggagaatcgtttgaacccaggaggcagggttgcagtgagccgagatcgtcccactgaaatccagtctgggagagagaattaagaccttgtctcagaaaaa--------aggcaaagaa-
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1059714 132 +   1314817 cagctactcaggaggctgaggcaggagaatcccttgaacccgggatgcggggttgcagtgagccgagatcgtgccactgaactccagtctgggagagataa-taagaccttgtcacagaaaaa--------aaaagaaaaa-
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6412584 132 -   6597006 cagctactcaggagactgaagcaggagaatcacttgaacccgggaggcggggttgcagtgagccgagatcatgctactgaactccagtctgggagagagaa-taagaccttgtctcaggaaaa--------aaaaagaaaa-
i aotNan1.NW_018488791v1       C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79104118   0 -  85426708 C
e otoGar3.GL873538              19651453   6 -  27850971 I
e dasNov3.JH570393               1728013   6 -   2296528 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=4909.000000
s hg38.chr14_GL000009v2_random     26821 1 +    201709 g
s panTro5.chr9                  41702798 1 + 116767853 g
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96048227 1 - 114479721 g
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           83844 1 -    416926 g
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820834 1 + 122973662 g
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   515437 1 - 111343173 G
i rheMac8.chr15                N 0 C 0
s macNem1.NW_012012823v1          355544 1 +    434444 g
i macNem1.NW_012012823v1       I 1 C 0
s cerAty1.NW_012002921v1          402856 1 -    438202 g
i cerAty1.NW_012002921v1       I 1 C 0
s chlSab2.chr2                  66452604 1 +  90373283 g
i chlSab2.chr2                 I 1 C 0
s manLeu1.NW_012105442v1         1503052 1 -   1547936 g
i manLeu1.NW_012105442v1       I 1 C 0
s colAng1.NW_012121088v1           18138 1 +    168452 g
i colAng1.NW_012121088v1       I 1 C 0
s cebCap1.NW_016107851v1         1059846 1 +   1314817 a
i cebCap1.NW_016107851v1       C 0 I 3
s aotNan1.NW_018488791v1         6412716 1 -   6597006 a
i aotNan1.NW_018488791v1       C 0 I 10
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79104118 0 -  85426708 C
e otoGar3.GL873538              19651453 6 -  27850971 I
e dasNov3.JH570393               1728013 6 -   2296528 I
e saiBol1.JH378105              64642241 0 -  72162052 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=35030.000000
s hg38.chr14_GL000009v2_random     26822 4 +    201709 aaaC
s panTro5.chr9                  41702799 4 + 116767853 aaaC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96048228 4 - 114479721 aaaG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           83845 4 -    416926 aaaC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820835 4 + 122973662 aaaC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   515438 4 - 111343173 AAAC
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          355545 4 +    434444 aaGC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402857 4 -    438202 aaGC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66452605 4 +  90373283 aaaC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1503053 4 -   1547936 aaaC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           18139 4 +    168452 aaaC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130382708 4 - 210400635 AAAC
i calJac3.chr1                 N 0 C 0
s saiBol1.JH378105              64642241 4 -  72162052 aaaC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1059850 4 +   1314817 aaaC
i cebCap1.NW_016107851v1       I 3 C 0
s aotNan1.NW_018488791v1         6412727 4 -   6597006 aaAC
i aotNan1.NW_018488791v1       I 10 C 0
s otoGar3.GL873538              19651459 4 -  27850971 AATC
i otoGar3.GL873538             I 6 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79104118 0 -  85426708 C
e dasNov3.JH570393               1728013 6 -   2296528 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=832682.000000
s hg38.chr14_GL000009v2_random     26826 85 +    201709 TGATTTCTGCCCAAATCTCCATCTGTATCCCTTTCC-CC-----ATCTGCCTTTTTCTCTGGAATTACTGAGCTGCTGGTAATGG-CCCCTC
s panTro5.chr9                  41702803 86 + 116767853 TGATTTCTGCCCAAATCTCCATCTGTATCCCTTTCC-CC-----ATCTGCCTTTTTCTCTGGAATTACTGAGCTGCTGGTAAGGGCCCCCTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96048232 86 - 114479721 TGATTTCTGCCCAAATCTCCATCTGTAGCCCTTTCC-CC-----ATCTGCCTTTTTCTCCGGAATTACTGAGCTGCTTGTAATGGCCCCCTC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           83849 86 -    416926 TGATTTCTGCCCAAATCTCCATCTGTAGCCCTTTCC-CC-----ATCTGCCTTTTTCTCTGGAATTACTGAGCTGCTGGTAATGGCCCCCTC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820839 86 + 122973662 TGACTTCTGTCCAAATCTCCATCTCTAGCCCTTTCC-TC-----ATCTGCCTTTTTCTCTGGAATTACTGAGCTGCTGGTAATGCCCCCCTC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   515442 86 - 111343173 TGGCTTCTGCCCAAATCTCCATCTGCAGCCGTTTCT-CT-----GTCTGCCTCTTTTTCTGGCATTACTGAGCTGCTGGTGATGCCCCCGTC
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          355549 86 +    434444 TGACTTCTGCCCAAATCTCCATCCGTAGCCCTTTCC-CC-----ATCTGCCTTTTTCTCTGGAATTACTGAGCTGCTGGTAATGCCCCTCTC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402861 86 -    438202 TGACTTCTGCCCAAATCTCCATCTGTAGCCCTTTCC-CC-----ATCTGCCTTTTTCTCTGGAATTACTGAGCTGCTGGTAATGCCCCTCTC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66452609 86 +  90373283 TGACTTCTGCCCAAATCTCCATCCGTAGCCCTTTCC-CC-----ATCTGCCTTTTTCTCTGGAATTACTGAGCTGCTGGCAATGGCCCCCTC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1503057 86 -   1547936 TGACCTCTGCCCGAATCTCCATCCGTAGCCCTTTCC-CC-----ATCTGCCTTTTTCTCTGGAATTACTGAGCTGCTGGTAATGCCCCTCTC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           18143 86 +    168452 TGATTTCTGCCCAAATCTTCATCCATAGCCCATTCC-CC-----ATCTGCCTTTTTCTCTGGAATTACTGAGCTGCTGGCAGTGGCGCCCTC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130382712 85 - 210400635 TGGCTTCTGCCCAAATCTCCATCTGCAGCCTTTTCT-CT-----GACTGCCCTTTTATTTGCCATTACTGAGCTGCTCGTAATGCCTCCGT-
i calJac3.chr1                 C 0 I 1
s saiBol1.JH378105              64642245 84 -  72162052 TGACTTCTGCCC-AATCTCCATCTGTAGCCCTTTCC-CC-----ATCTGCCCTTTTCTCTGGAATTAATGAAACGCTGGTAGTACCCCCCT-
i saiBol1.JH378105             C 0 I 294
s cebCap1.NW_016107851v1         1059854 84 +   1314817 TGACTTCTGCCC-ATTCTCCATCTGTAGCCCTTTCC-CC-----ATCTGCCCTTTTCTCTGGAATTAATGAAATGCTGGTAGTGCCCCCCT-
i cebCap1.NW_016107851v1       C 0 I 1
s aotNan1.NW_018488791v1         6412731 84 -   6597006 TGACTTCTGCCC-AATCTCCATCTGTAGCCCTTTCC-CC-----ATCTGCCCTTTTCTCTGGAATTACTGAGTTGCTGGTAGTGCCCCCCT-
i aotNan1.NW_018488791v1       C 0 I 1
s otoGar3.GL873538              19651463 91 -  27850971 TGACTTCTGTCCAACTCTCTCTGTTTAGTCCTTTCC-CCTCCCTGTCTGCCCTTTTCTCTGGCATCACTGAACTACTGCTGATGTCCTCCTC
i otoGar3.GL873538             C 0 I 1
s canFam3.chr2                  79104118 86 -  85426708 tgacttctgcctaactctccatcttttgccctttatact-----gtctgcccttatctctgacATC-CTGAACTGCTAGTGATGTTTTCCTC
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1728019 84 -   2296528 tgtctcctgcctaactcttcatctttagccttct-t-ct-----gtctgccattttctctggcatcactgaattcctggttCAACCTCCTC-
i dasNov3.JH570393             I 6 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=941360.000000
s hg38.chr14_GL000009v2_random     26911 106 +    201709 -ACCATTCCTCTTCTGCAGAGAAATACATACTCTCTTGGAGGCTTCTCTTCCTC-TCTtgttgccgcctggcatgtgctcaccctttcctgccctctgcctcgcttaa
s panTro5.chr9                  41702889 106 + 116767853 -ACCATTCCTCTTCTGCAGAGAAATACATACTCTCTTGGAGGCTTCTCTTCCTC-TCTTGTTGctgcctggcatgtgctcaccctttcctgccctctgcctcgcttaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96048318 106 - 114479721 -ACCATTCCTCTTCTGCAGAGAAATACGTACTCTCTTGGaggcttctctccctc-tcttgttgcttcctggcatgtgctcactctttcctgccctctgcctcacttaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           83935 106 -    416926 -ACCATTCCTCTTTTGCAGAGAAATACATACTCTCTTGGAGGCTTCTCTCCCTC-TCTTGTTGctgcctggcatgtgctcaccctttcctgccctctgcctcacttaa
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40820925 106 + 122973662 -ACCGTTCCTGTTTTGTAGAGAAATACATATGCTCTTGAAGGCTTCTCTCCCTC-TCTTATTGctgcctggcgtgtgcttaccctttcctgccctctgcctcccttaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   515528 104 - 111343173 -ACCGTCCCTCTCATGTAGACAAATACGTACACTCTGGGAGACTTCTCTCCCTC-TCTTGCCACTGCCTGGCATGTACTA--TCTTTCCTGCCCTCTGCCTCTTTTAA
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          355635 106 +    434444 -ACCATTCCTCTTTTGCAGAGAAATACACATGCTCTTGGaggcttctctccctc-tctcggtgctgcctggcatgtgctcatcctttcctgccctctgcctcacttaa
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          402947 106 -    438202 -ACCATTCCTCTTTTGCAGAGAAATACACATGCTCTTGGaggcttctctacctc-ttttggtgctgcctggcatgtgctcaccctttcctgccctctgcctcacttaa
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66452695 106 +  90373283 -ACCATTCCTCTTTTGCAGGGAAATACATATGCTCTTGGAGGCTTCTATCCCTC-TCTTGGTGctgcctggcatgtgctcaccctttcctgccctctgcctcacttaa
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1503143 106 -   1547936 -ACCATTCCTCTTTTGCAGAGAAATACATATGCTCTTGGaggcttctctccctc-tcttggtgctgcctggcatgtgctcaccctttcctgccctctgcctcacttaa
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           18229  92 +    168452 -ACCGTTCCTCTTTTGCAGAGAAATACACACACTCTTGGAGGCTTCTCTCCCTC-TCTCATTGcttcctgacatgtgctcaccctttcctgccc--------------
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130382798 104 - 210400635 -ACCATCCCATTGATGTAGACAAATACATATGCTCTGAGAGGCTTCTCTCCCTC-TCTTGCCACTGCCTGGCATTTGCT--ACCTTTTCTACCCTCTGCCTCTTTTAA
i calJac3.chr1                 I 1 C 0
s saiBol1.JH378105              64642623 106 -  72162052 -ACCATTCCTCTTTTGTAGAGAAATACATATGCTCTCGGAGGCTTCTCGCCCTC-TCTTGTTGCTGCCTGGCCTGTGCTCACCCTTCCCTGCCCTCTGCCTCACTTAA
i saiBol1.JH378105             I 294 C 0
s cebCap1.NW_016107851v1         1059939 105 +   1314817 -ACCATTCCTCTTTTGTAGAGAAATGCATATGCTCTTGGAGGCTTCTTGCCTTC-TCTTATTGCTGCCTGGCCTGTGCTCACCCTTCCCTGCCCTCTGCCTCCTTAA-
i cebCap1.NW_016107851v1       I 1 C 0
s aotNan1.NW_018488791v1         6412816 106 -   6597006 -ACCATTCCTCTTTTGTAGAGAAATACCTAAGCTCTTGGAGGCTTCTCGCCCTC-TCTTGTTGCTGCCTGGCCTGTGCTCACCCTTCCCTGCCCTCTGCCTCACTTAA
i aotNan1.NW_018488791v1       I 1 C 0
s otoGar3.GL873538              19651555  94 -  27850971 -CCTGTCTCTGTATTTTAGACCAATACGTATAGCATTTCATGCTTCTCTTCTTC-TCTTGCTGCCACCTTG------------CTTTCCTGTCCTCTACCCCTTTTAA
i otoGar3.GL873538             I 1 C 0
s canFam3.chr2                  79104205 107 -  85426708 -TTGATCCCTGTATTTTAGGCAAATGTTTACCCTGTTGTGTGCTTCTCTCCCTTGTCTTACTACAGCCTTGCATGCTCTCCCCATTTTCTGCCCTCTAATCCCTTTGA
i canFam3.chr2                 I 1 I 1
s dasNov3.JH570393               1728103 100 -   2296528 ACCAATCCCTCCCTTTTAGACATATATCCACTCTCT-GGATGATGCTTTCTCTG-------TGTTGCCTTGGATGTCCTCACACCTTCCTGCTTTCTATCTTCTTTAA
i dasNov3.JH570393             C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=2583412.000000
s hg38.chr14_GL000009v2_random     27017 352 +    201709 tctggctaacctcactctctaagtctcagctcatgg------gtgatctttaggaaagccatccctgacAGCTTCTA-----------------------------TTTTC---CTtc----cttattccccagtgcctaacacttagcaggaactcaataagtaatt------------------------------------------------------------attTAGCAAA----ATTAAGACTGTTTatacaaagatgatt-caaaagattgtcctct-acag-----tctag-cagcaaagggggtcaacatgtaaagacatgatgtgcaggt--caggtggtaaagtgacactagaaaaattgacaaggtactaagggaccccaacg----aagcagacacctgtgtgtgtggagaaagatagctagaatcaaggaagatttcacatagcattctgagcc---tt
s panTro5.chr9                  41702995 352 + 116767853 tctggctaacctcactctctaagtctcagctcatgc------atgatctttaggaaagccatccctgacAGCTTCTA-----------------------------TTTTC---CTtc----cttttaccccagtgcctaacacttagcaggaactcaataactaatt------------------------------------------------------------attTAGCAAA----ATTAAGACTGTTTATACAAAGATGATT-CAAAAGATTGTCCTCT-ACAG-----TCTAG-CAGCAAAGGGGGTCAACATGTAAAGACATGATGTGCAGTT--CAGGTGGTAAAATGACACTAGAAAAATTGACAAGGTACTAAGGGACCCCAACG----AAGCAGACACCTGTGTGTGTGGAGAAAGATAGCTAGAATGAAGGAAGATTTCACATAGCATTCTGAGCC---tt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96048424 352 - 114479721 tctggctaacctcattctctaagtctcagctcatgc------atgatctttaggaaagccatccctgacAGCtttta-----------------------------ttttc---cttc----cttattccccagtgcctaacacctagcaggaactcaataactaatt------------------------------------------------------------attTAGCAAA----ATTAAGACTGTTTatacaaagatgatt-caaaagattgtcctct-acag-----tctgg-cagcaaaggggatcaacatgtaaagacatgatgtgcagtt--caggtggtaaagtgacactagaaaaattgacaaagtgctaagggaccccaacg----aagcagacacctgtgtgtgtggagaaagagagttaaaatcaaggaatacttcacgtagcattctgagcc---tt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           84041 352 -    416926 tctggctaaccttactctctaagtctcagctcatgc------atgatctttaggaaagccatccctgacAGCtttta-----------------------------ttttc---cttc----cttataccccagtgcctaacacttagcaggaactcaataagtaatt------------------------------------------------------------attTAGCAAA----ATTAAGACTGTTTatacaaagatgatt-caaaagattgtcctct-acag-----tctag-cagcaaaggggatcgacatgtaaagacatgatgtgcagtt--caggtggtaaagtgacactggaaaaattgacaaagtactaagggactccaatg----aagcagacacctgtgtgtgtggagaaagatagctagaatcaaggaagacttcacacagcattctgagcc---tt
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40821031 352 + 122973662 tctggctaaccttaccctctaagtctcagctcatgc------atgatctttaggaaagccatccctgacTGCTTTTA-----------------------------TTTTC---CTTT----CTTAAACTTCAGTGCTTAACACTTAGCAGGAACTCAGTAACTAATT------------------------------------------------------------ATTTAGCTAA----GTTAAGACTGTTTATACAAAGATGATT-CAAAAGATTTTCTTCT-ACAG-----TCTAG-CAGCAAAGGGGATCGACGTGTAAAGACATCATGTGTGGTT--CAGGTGGTAAAGTGATACTAGAAAAATTGACAAAGTACCAAGGGAGCCCCAAG----AAGCAGACACCTGTGTATGTGGAGAAAGATAGCTAGAATCAAGGAAGACTTCACATAGCATTCTGAGCC---tt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   515632 331 - 111343173 TCTGGTGAACCTCACTGTCTAAGTCTCAGTCCAGGC------ATGTTTTCTCCAAAAGCCATTCCTGACAGCtttta-----------------------------ttctc---attc----tttaaaccccagtgcctaccacttagcaggaactcaataaa----t------------------------------------------------------------atttagtaaa----ataaaGACTGTTTATACAAAGATGA--------------CTGCT-ACAG-----TCTGG-CAACAAAGGGGATAGACATGCAAAGACATGATGTGCAGTT--CAGATGGTGAAGTGACACTAGAAAAATGGACAAAGTACTAAGGGAGCCCCAAG----GAAGGAGAGCCTGTGTATGTGGAGAA----AGCCAGATTCAAGGAGGACTTCACATAGCATTTTGAGCC---tt
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          355741 352 +    434444 tctggctaaccttactctctaagtctcagctcatgc------atgatctttaggaaagccatccttgacagctttta-----------------------------ttttc---cttc----cttataccccagtgcttaacacatagcaggaactcaataactaatt------------------------------------------------------------atttagtaaa----GTTAAGACTGTTTatacaaagatgatt-cagaaaattgtcttct-acag-----tctag-cagcaaaggggatcgacatgtaaagacatgatgtgcagtt--gaggtagtaaagtgacactagaaaaattgacaaagtactaagggagccccaag----aagcagaaacgtgcgtatgtggagaaagatagctagaatcaaggaagacttcacatagcattctgagcc---tt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          403053 352 -    438202 tctggctaacctcactctctaagtctcagctcatgc------atgatctttaggaaagccatccctgacAGCTTTTA-----------------------------TTTTC---CTTC----CTTTTACCCCAATGCCTAACACTTAACAGGAACTCAGTAGCTAATT------------------------------------------------------------ATTTGGCAAA----GTTAAGACTGTTTatacaaagacgatt-cagaagatcgtcttct-acag-----tctag-cagcaaaggggatcgacatgtaaagacatgatgtgcagtt--gaggtggtacagtgacactagaaaaattgacaaagtactaagggagccccaag----aagCAGAAACGTGTGTATGTGGAGAAAGATAGCTAGAATCAAGGAAGACTTCACATAGCATTCTGAGCC---Tt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66452801 352 +  90373283 tctggctaacctcactctctaagtcgcagctcatgc------atgatctttaggaaagccatccttgacAGCTTTTA-----------------------------TTTTC---CTTC----CTTATACCCCAGTGCCTAACACTTAACAGGAACTCAATAGCTAATT------------------------------------------------------------ATTTGGCAAA----GTTAAGACTGTTTatacaaagatgatt-cagaagattgtcttct-acag-----tctag-cagcaaagggaattgacatgtaaagacatgatgtgcagtt--caggtggtaaagtgacactagaaaaattgacaaagtactaagggagccccaag----aagCAGAAACGTGTGTATGTGGAGAAAGATAGCTAGAATCAAGGAAGACTTCACATAGCATTCTAAGCC---tt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1503249 347 -   1547936 tctggctaaccttactctctaagtctcagctcatgc------atgatctttaggaaagccatccctgacAGCTTTTA-----------------------------TTTTC---CTTC----CTTTTACCCCAATGCCTAACACTTAACAGGAACTCAGTAGCTAATT------------------------------------------------------------ATTTGGC-AA----GTTAAGACTGTTTATACAGAGATGATT-CAGAAGATTGTCTTCT-CCAG-----TCTAG-CAGCAAAGGGGATCGAC----AAAGACATGATGTGCAGTT--GAGGTGGTAAAGTGACACTAGAAAAATTGACAAAGTATTAAGGGAGCCCCAAG----AAGCAGAAACGTGTGTATGTGGAGAAAGATAGCTAGAATCAAGGAAGACTTCACATAGCATTCTGAGCC---tt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           18321 348 +    168452 tctggctaaccttactctgtaagtcgcagctcatgc------atgatctttaggaaagccatcgctgacagctttta-----------------------------ttttc---cttc----cttataccccagtgcttaacacatagcaggaactcaataactaatt------------------------------------------------------------attTAGCAAA----GTTAAGAC--TTTatacaaagatgatt-caaaagattgtcctct-acaa-----cctag-cagcaaaggggatcaacatgtaaagacatgatgtgcagtt--caggtggtaaagtcacactggaaaaattgacaaagtactaagggaggcccatg----aagcagacacGTGTG--TGTGGAGAAAGACAGCTAGAATGAAGAAAGACTTCACACAGCATTCTGAGCC---tt
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130382902 333 - 210400635 -----TGAACTTCACTCTCTAAGTCTCAGCTCAGGCTCAGGTATGATCCCTAGAAAAGCTGTCTCCGGCGGCTTTTG-----------------------------TTTCC---ATTC----TTTAAACCCCAGTGTTTACCACTTAGCAGGAACTCAACAAA----T------------------------------------------------------------CTTTAGTAAA----ATAAAGAC--TTTATAGAAAGATGATT--------------GCT-ACAG-----TCTAG-CAGCAAAGAGGATAGACATGTAAAGACATGACGTGCAGTTCGCAGGTGGTGGAGTGA-ACTAGAAAAATTTACCATGTACTGAGGGAGCCTCAAGG---AAGGAGACATCTGTGTATGTGGTGAA----AGCCGGATGCCTGGAAGACTTGACATAGCTTTCTGAGCC--ttt
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1060044 354 +   1314817 TCTGGCTGACCTCGCTCTCTGAGTCTCAGCTCAGGC------ATGATCTTTAGGAAAGCc-tccctgacagctgtta-----------------------------ttttc---cttc----cttataccccagtgcctagcacttagcaggcactcaataaataatt------------------------------------------------------------atttagtaaa----attaagactgtttatacaacgatgact-caaaagattgtcccct-acag-----cctag-cagcaaaggggattgacgtgtaaagacacgaggtgcagtt--caggtggtcaagttacactagaaatattgacaaagtacgaagggagccccaagaggcagacagacacctatgtatgtggagaa----aggcagaatcaaggaagacttcgcgtagcattctgagccttttt
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6412922 350 -   6597006 TCTGGCTGACCTCACTCTCTGAGTCTCAGCTCAGGC------ATGATCTTTAGGAAAGCC-TTCCTGACAGCTGTTA-----------------------------TTTTC---CTtc----cttatatcccagtgcttagcacttagcaggcactcaataaataatt------------------------------------------------------------atttagtaaa----ATTAAGACTGTTTATACAACAATGACT--CAAAAATTGTCCcct-acag-----cctag-tagcaaaggggatcaacaggtaaagatatgaggtgcagtt--caggtggtcaagttacactggaaaaattgacaaagtacgaagggagccccaag----aagcagacacctatgtatgtggagaaagatagccagaatcaaggaagactttgcataacattctgagcc---tt
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19651649 365 -  27850971 TCTGGCTGACCTCACTCCTTAAGTCTCAGCTTAGGC------ATTGTCTCTAGAACAGCT-GGTCTGACAGCTCTTA-----------------------------TTTAC---TTTCTTAGTTTAAATCCCAGTGCCTAGCTCTTAGCAGAACCTAAGtaaataattgaataaaaaaatgaaaaaattataaaaaagtttttataaaagttataaaaaattgaaaaaattgaataaa----ataaGTGATGATTATATGCAGATGATTTTAAAAGACTGACCTCT-ACAA-----TCTAG-GAAGAAAGGGGATAGACTCGTAAAGAAATAATTTACAGTT--CAGGTGGAAGTAGGTTAGCAGAGGAACTGGTAAAGCACTGAGACTGCCCCAGA----AAGGAGATGCCTGTTTATCT------------------------------------------------------
i otoGar3.GL873538             C 0 I 35
s canFam3.chr2                  79104313 329 -  85426708 TCTGTCTGATGTCACTGTTGCAGTCTCAGTTTAGGC------ATTATCTCTAAAAAAGCTATTCCTGACACCTTATA-----------------------------TATACATGCTTT----TTTAAATCTGGTACCCTAGCACTTAGTGGGAACTCCGTAAATAATT------------------------------------------------------------ACTAAGTAAC----ATAAAGACTGTTTACACAAAGATGATT-TAAGAGAATGTCCCCT-ACAgggacacctggttggttcagttggttga-gcgtccagctcttgatttcagtt--caggtcat-atctcagacttgtgagat---------------ggagccctacg----tggggctcagcactgggagtgga-------------acccactcaaaattctctctattcttctgctcc-----
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1728203 379 -   2296528 TCCAGCTAGCCCTCCTCTTTAAGTCGCAGTCCAGAC------ATCATCTCTAGAAAAGCCATCTGTAATACCTTTTATCTGGACTCCCCACCAgatggttccttactcttc---ctta----attaagccctggtgaccagtatatagtaggaactcaataaataatt------------------------------------------------------------gttgaataaaATACATAAAGACTACTTATATAAAAATGACT-TAAGGTACTGCCCCCCAACAA-----TCTAG-GAGCAAAGAGGA--GAGATGTAAAAAAATAAT-TATATTC--GGGGTAGTAAAGATACACTAG-GAAATCTATAAAGTACTAAGGTAGCACCAAGG---AAAGAAACA---ATTTATCTGGA-AAAGATAGTTACAATTCAGGAAGACTTCAGGTAACAGGCTGGATC---TT
i dasNov3.JH570393             C 0 I 30
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e saiBol1.JH378105              64642729   0 -  72162052 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=5893.000000
s hg38.chr14_GL000009v2_random     27369  7 +    201709 t------tt-------ttct
s panTro5.chr9                  41703347  8 + 116767853 t-----att-------tttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96048776  6 - 114479721 -------tt-------attt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           84393 12 -    416926 tttt-tttt-------cttt
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40821383 12 + 122973662 tttt-tttt-------cttt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   515963  8 - 111343173 tttt------------cttt
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          356093 17 +    434444 tttt-tttt--ctttccttt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          403405 18 -    438202 ttttttttt--cttttcttt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66453153 19 +  90373283 tttt-tttttccttttcttt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1503596 17 -   1547936 tttt-tttt--cttttcttt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           18669 14 +    168452 tttt-cttt-----ttcttt
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130383235 12 - 210400635 tttt-tttt-------cttt
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1060398 12 +   1314817 tttt-tttt-------cttt
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6413272 12 -   6597006 attt-tttt-------cttt
i aotNan1.NW_018488791v1       C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79104642  0 -  85426708 C
e otoGar3.GL873538              19652014 35 -  27850971 I
e dasNov3.JH570393               1728582 30 -   2296528 I
e saiBol1.JH378105              64642729  0 -  72162052 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=379147.000000
s hg38.chr14_GL000009v2_random     27376 55 +    201709 tcctctttttggagacaagttcttactctatcacccaggatt-ggagtgcaatggc
s panTro5.chr9                  41703355 54 + 116767853 tcctctttttggagacaagttcttactctatcacccagga-t-ggagtgcaatggc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96048782 54 - 114479721 ttctgttgttggagacaagttcttactctattaccctgga-t-ggagtgcaatggc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           84405 54 -    416926 ttctgttgttggagacaagttcttactctatcacccaggg-t-ggagtgcgatggt
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40821395 54 + 122973662 tcctgttgttggagacaagttcttactctgtcacccaggg-t-ggagtgcaatggc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   515971 54 - 111343173 ttctgtttttggaaacaagttcttaatctgtcacccaggg-t-ggactgcaatggc
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          356110 54 +    434444 ttctgttgctggagacaagttcttactctgtcgcccaggg-t-ggagtgcaatgac
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          403423 54 -    438202 ttctgttgctggagacaagttcttactctgtcgcccaggg-t-ggagtgcaatgac
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66453172 54 +  90373283 ttctgttgctggagacaagttcttactctatgccccaggg-t-ggagtgcaatgac
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1503613 54 -   1547936 ttctgttgctggagacaagttcttactctatgccccaggg-t-ggagtgcaatgac
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           18683 54 +    168452 ttctgttgttggagacaaattcttactctatgccccaggg-t-ggagtgcaatggc
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130383247 54 - 210400635 ttctgtttgtagagacaggttcttactctgctactaaagg-t-ggagtgcaatggc
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1060410 54 +   1314817 ttctgttgttggagacaagttcttactctatcacccaggg-t-ggagtgcaatggc
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6413284 54 -   6597006 ttctgttgttggagacaagttcttactctatcacccaggg-t-ggagtgcaatggc
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79104642 55 -  85426708 tccccttctctcAGAGAGGTTGAGATTGTCCCATACAGTG-TAGGAGCAAAAGAAC
i canFam3.chr2                 C 0 I 143
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19652014 35 -  27850971 I
e dasNov3.JH570393               1728582 30 -   2296528 I
e saiBol1.JH378105              64642729  0 -  72162052 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1000251.000000
s hg38.chr14_GL000009v2_random     27431 150 +    201709 atgattgagactcactgaaacctcagacttctgggctcgagggatcttctcatctaagcttcttgagtagcggggacaacaggaacatatcaccatacctgtctaattttttgtagagtcaag------g-ttac-ctatggttcccaggctggtctt
s panTro5.chr9                  41703409 150 + 116767853 atgattgagactcactgaaacctcagactcctgggcttgagggatcttctcacctaagcttcttgagtagctgggacaacaggaacatatcaccatacctgtctaactttttgtagagtcaag------g-ttac-ctatggttcccaggcttgtctt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96048836 150 - 114479721 atgattgagactcactgcaacctcaaactcctgggctcaagggatcttctcacctaagcttcttgagtagctgggacaacaggcacatatcaccatgcctgtctaactttttgtagagtcaag------g-ttac-ctatggttcccaggctggtctt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           84459 148 -    416926 gtgatcgagactcactgcaacctcaaactcctgggctcgagggatcttctcacctaagcttcttgagtagctgggactacaggcacatatcaccatacctgtccaa-tttttgtagagtcaag------g-ttat-ct-tggttcccaggctggtctt
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40821449 151 + 122973662 atgatcgagactcactgcaacctcaaactcctgggctcaagggatcttctcacctaaacttcttgaatagctggtactacaggcacatatcaccatgcctgtctaattttttgtagagtcaag------gtttag-ctatggctcccaggctggtctt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   516025 151 - 111343173 atgatcgagactcactgcaaactgaagctcctgggcttaagggatcctcttgcctcaaattcttgaatagctggtactacaggcacacaccaccatgtctggcaaattttctatagagtcagg------a-tttcactatggtctccaggctggtctt
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          356164 150 +    434444 gtgatcgagactcactgcaacctcaaactcctgggctcaagggatcttctcacctaaacttcttgagtagctgggactgcaggcacatatcaccatgcctgtctaattttttgtagagtcaat------g-ttat-ctatggttcccaggctggcctt
i macNem1.NW_012012823v1       C 0 I 1
s cerAty1.NW_012002921v1          403477 141 -    438202 atgatcgagactcactgcaacctcaaactcctgggctcaagggatcttctcacctaaacttcttgagtagct---------ggcacatatcaccatgcctgtcgaattttttgtagagtcaag------g-ttag-ctatggttcccaggctggtctt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66453226 150 +  90373283 gtgatcgagactcactgcaacctcaaactcccgggctcaagggatcttctcacctgaacttcttgagtagctgggactgcaggcacatatcaacatacctgtctaattttttgtagagtcaag------g-ttat-ctatggttcccaggctggtctt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1503667 150 -   1547936 gtgatcgagactcactgcaacctcaaactcctgggctcaagggatcttctcacctaaacttcttgagtagctgggactacaggcacgtatcaccatgcctgtcgaattttttgtagagtcaag------g-ttag-ctatggtttccaggctggtctt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           18737 150 +    168452 gtgatcgagactcactgtaacgtcaaactcctgggctcaagggatcttctcacctaaacttcttgagtagctgggactgcaggcacatatcaacatacctgtctaattttttgtagagtcaag------g-ttat-ctatggttcccaggctggcctt
i colAng1.NW_012121088v1       C 0 I 476
s calJac3.chr1                 130383301 157 - 210400635 gtcatcaagactcactgtaaactcaaactcctgggtttaagcaatcctctcatctcaacctcttaagtagctgggactacaggtacataccaccatgcctggcagattttctatagagtcggggaaactgactca-ctataatctccaggcttgtctt
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1060464 151 +   1314817 atgatcgagactcactgcaacctcaaactcctgggctcaagggatcttctcacgtaaacctcttgagtagctgggactataagctcatatcaccatgcctgtgtaattttttgtagagtcaag------gttttg-ctatggtttccaggctggtctt
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6413338 150 -   6597006 atgatcgagactcactgcaacctc-aactcctgggctcaagggatcttctcacttaaacctctttagtagctgggactacaggcacatatcaccatgcctgtctaattttttgtagagtcaag------gttttg-ctgtggtttccaggctggtctt
i aotNan1.NW_018488791v1       C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79104697 143 -  85426708 I
e otoGar3.GL873538              19652014  35 -  27850971 I
e dasNov3.JH570393               1728582  30 -   2296528 I
e saiBol1.JH378105              64642729   0 -  72162052 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=272569.000000
s hg38.chr14_GL000009v2_random     27581 42 +    201709 aaacttttggccttgagcaattctcccattttggcct-----------------------------tccaa
s panTro5.chr9                  41703559 42 + 116767853 aaactcttggccttgagcaattctcccattttggcct-----------------------------tgcaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96048986 42 - 114479721 aaactcttgtccttgagcaattctcccattttggcct-----------------------------tccaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           84607 42 -    416926 aaactcctggccttgagcaattctcccattttggcct-----------------------------tccaa
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40821600 42 + 122973662 aaactcttggcctcgagcaattctcccattttggcct-----------------------------tccaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   516176 42 - 111343173 aaactccttgctttaagcagttatcccacctgggcct-----------------------------tccaa
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          356315 42 +    434444 aaactcttggccttgagcaattctcccattgtggcct-----------------------------tccaa
i macNem1.NW_012012823v1       I 1 C 0
s cerAty1.NW_012002921v1          403618 42 -    438202 aaactcttggcctcgagcagttctctcattttggcct-----------------------------tccaa
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66453376 42 +  90373283 aaactcttggcctggagcagttctcccattttggcct-----------------------------tccaa
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1503817 42 -   1547936 aaactcttggcctcgagcagttctcccattttggcct-----------------------------tccaa
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           19363 42 +    168452 aaactcttggccttgagcaattctcccattgtgacct-----------------------------tccaa
i colAng1.NW_012121088v1       I 476 C 0
s calJac3.chr1                 130383458 71 - 210400635 aaactctcagcctcaagtaaatctccctcctgggccttccaacgtgctgggatccctcctggaccatccaa
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1060615 42 +   1314817 aaactgttgtccttgggcagttctcccattttggctt-----------------------------tccaa
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6413488 42 -   6597006 aaattcttggccttgagcaattctcccattttggctt-----------------------------tccaa
i aotNan1.NW_018488791v1       C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79104697 143 -  85426708 I
e otoGar3.GL873538              19652014 35 -  27850971 I
e dasNov3.JH570393               1728582 30 -   2296528 I
e saiBol1.JH378105              64642729  0 -  72162052 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=311236.000000
s hg38.chr14_GL000009v2_random     27623 43 +    201709 agtgctgggattacagatgtgagctattatgcccagcctactt
s panTro5.chr9                  41703601 43 + 116767853 agtgctgggattacagatgtgagctattatgcccagccTACTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96049028 43 - 114479721 agtgctgggattacagatgtgagctattatgcccagcctactt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           84649 43 -    416926 agtgctgggattacagatgtgagctattatgcccagcctactt
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40821642 43 + 122973662 agtgctgggattacagatgtgagctattatgcccagccTACAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   516218 43 - 111343173 agtgctgggataacaggtgtgagctactgtgcccagccTACAT
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          356357 43 +    434444 agtgctgggattacagatgtgagctattatgcccagcctacat
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          403660 43 -    438202 agtgctgggattacagatgtgagctattatggccagccTACAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66453418 43 +  90373283 agtgctgggattacagatgtgagctattatgcccagccTACAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1503859 43 -   1547936 agtgctgggattacagatgtgagctattatggccagccTACAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           19405 37 +    168452 agtgctaggattacagatgtgagctattatggccag------T
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130383529 43 - 210400635 agtgctgggattacaggtgtgagctactattcccaaccTCCAC
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1060657 43 +   1314817 agtgctgggattacagatgtgagctattgtgcccagcctacat
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6413530 43 -   6597006 agtgctgggattacagatgtgagctattgcgcccagcctacat
i aotNan1.NW_018488791v1       C 0 C 0
s dasNov3.JH570393               1728612 17 -   2296528 AGTGC--GGGATACAGATA------------------------
i dasNov3.JH570393             I 30 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79104697 143 -  85426708 I
e otoGar3.GL873538              19652014 35 -  27850971 I
e saiBol1.JH378105              64642729  0 -  72162052 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=2758503.000000
s hg38.chr14_GL000009v2_random     27666 384 +    201709 tctgagtcttaaaagatgaaaataaatttttcagaatagcaggggaaaacattt------------------gtgatata-------aaaaatggggtgcacaCTAATTGAGGTATAA--A-CAAC---AATAAT---TTTGCAAATTATTAGTAACTGC---TAACTCAA---TTAGTGTCTTGTTAAAAAGATACTGTTATGAAGT-----ATAG-------TAAAGCATT-ACATTGTATATTTTGACTGTATTTCAAATTTCTG--TTTTGTTTCCAACAG-TTTTGTTGACTTATGTT-GGGTGGAACAATTTGTGAGTGTCCCT--GAGA-T-TTTGCATGGCTTGAATCT-GGTGATATCTGGTGTCTCCCCAAGTGG------------TTTGTTGAAGTTTTGGATAATTAGAAGTATTTCTTACAGAAGTAAATATTTCAGTAAACAT
s panTro5.chr9                  41703644 380 + 116767853 TCTGAGTCTTAAAAGATGAAAATAAATTTTTCAGAATAGCAGGGGAAAACATTT------------------GTGATGTA-------AAAAATGAGGTGAACACTAATTGAGGTATAA--A-GAAC---AATAAT---TTTGCAAATTATTAGTAACTGC---CAACTC-------AGTGTCTTGTTAAAAAGATACTGTTATGAAGT-----ATAG-------TAAAGCATT-ACATTGTATATTTTGACTGTATTTCAAATTTCTG--TTTTGTTTCCAACAG-TTTTGTTGACTTATGTT-GGGTGGAACAATTTGTGAGTGATCCT--GAGA-T-TTTGCATGGCTTGAATCT-GGTGATATCTAGTGTCTCCCCAAGTGG------------TTTGTTGAAGTTTTGGATAATTAGAAGTATTTCTTACAGAAGTAAATATTTCAGTAAACAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96049071 384 - 114479721 tctgagtcttaaaagatgaaaataaatttttcagaatagcaggggaaaacattt------------------gtgatgta-------aaaaatggtgtgcaCACTAATTGAGATATAA--A-CAAT---GATAAT---TTTGCAAATTATTAGTAACTGC---CAACTCAA---TTAGTATCTTGTTAAAAAGATACTGTTATGAGGT-----ATAG-------TAAAGTGTT-ACATTGTATATTTTGACTGTATTTCAAAATTCTG--TTTTGTTTCCAACAG-TTTTGTTGACTTACGTT-GGGTGGAACAATTTGTGAGTGACCCT--GAGA-T-TTTGTATGGCTTGAATCT-GGTGATATCTAGTGTCTCCCCAAGTGA------------TTTGTTGAAGTTTTGGATAATTAGAAGTATTTCTTACATAAGTAAATATTTCATTAAACAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           84692 383 -    416926 tctgagtcttaaaagatgaaaataaatttttcagaatagtaggggaaaacattT------------------GCGATGTA-------AAAAATGGGGTGCACACTAATTAAGGTATAA--A-CAAC---AATAAT---TTTGCAAATTATTAGTAACTGC---CAACTCAA---TTAGTGTCTTGTTAAAAAGATACTGTTATGA-GT-----ATAG-------TAAAGTGTT-ACATTGTATATTTTGACTGTATTTCAAAATTTTG--TTTTGTTTCTAACAG-TTTTGTTGATTTATGTT-GGGTGGAACAATTTGTGAGTGACCCT--GAGA-T-TTCATATGGCTTGAACCT-GGTGATATCTAGTGTCTCCCCAAGTGG------------TTTGTTGAAGTTTTGGATGATTAGAAGTATTTCTTAAAGAACTAAATATTTCAGTAAACAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40821685 378 + 122973662 TCTGAGTCTTAAAAGATGAAAATAAATTTTTCAGAATAGTAG-----AACATTT------------------GTGATGTG-------AAAAACGGGGTGCACACTAATTAAGGTATAA--A-CAAC------AAT---TTTGCAAATTGTTAGTAACTGC---CAACTCAA---TTGGTGTGTTGTTAAAAAGATACTGTTATGAAGT-----ATAA-------TAAAGTGTT-ACATTGTATATTTTGACCGTATTTTAAAATTTTGGTTTTTTTTTCCAACAG-TTTTGTTTATCTATGTT-GGGCGGAACAATCTGTGAGTGACTCT--GAGA-T-TGTTTATGGCTTGAACCT-GGTGATATCTAGTGTCTCCCCAAGTAG------------TTTGTTGAAGTTTTGGATATTTAGAAGTATTTCTTAAATAAGTAAATATTTCAGTAAACAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   516261 392 - 111343173 TCTGAGTCTGAAAACACAACAATAAATTTGTCAGAATAGTAGAAGGAAATATTT------------------CAGATGTA-------AAAAACAGGGTGTACACT-ATAAAGGTATAACGG-TAAC---AAAAAT---TTTGCAAATTATTAGTAAATAA---CAACTCGC---TTAGCATGCTGTTAAACAGATACTATTATGAAGTAGAGAATAG-------TAAAGTGTA-ACTTAATATGTTTTCACTGTATTTTTAAATTTTG--TTTTGTTTCCAGCAC-TTTTGTTTACTTATGTTAAGGTGGAATAATTTGTGGCTGACACT--GAGACT-TTTGCGTGGCTTGAACCT-GCTGATATCTAGTGTCTCCCCAAGTGG------------GTTGTTAAAGTTTCAGATAATTAGAAGTGTTTCTTAAAAATGTAAATATTCCAGTAAACAT
i rheMac8.chr15                C 0 I 138
s macNem1.NW_012012823v1          356400 379 +    434444 tctgagtcttaaaagatgaAAATACATTTTTCAGAATTGTAG-----AACATAT------------------GCGATGTA-------AAAAACGGGGTGCACACTAATTACAGTATAA--A-CAAC---AATAAT---TTTGCAAATTATTAGTAACTGC---CAACTCAA---TTAGTGTGTTGTTAAAAAGATACTGTTATGAAGT-----ACAG-------TAAAGTGTT-ACATTGTATATTTTGAGTGTATTTTAAAATTTTG--TTTTGTTTGCAACAC-TTTTGTTTATCTACGTT-GGGTGGAACAATTTGTGAGTGACCCT--GAGA-T-TGTGTATGGCTTGAACCT-GGTGGTATCTAGTGTCTCCCCAAGTGG------------TTTGTTGAAGTTTTGGATAATGAGAAGTATTTCTTAAAGAAGTAAATATTTCAGTAAACAT
i macNem1.NW_012012823v1       C 0 I 2
s cerAty1.NW_012002921v1          403703 374 -    438202 TCTGAGTCTTAAAAGATGAAAATACATTTTTCAGAATTGTAG-----AACATTT------------------GCGATGTA-------AAAAACGGGGTGCGCACTAATTACAGTATAA--A-CAAC---AATAAT---TTTGCAAATTATTAGTAACTGC---CAACTCAA---TGAGTGTGTTGTTAAAAAGATACTGTTATGAAGT-----ACAG-------TAAAGTGTT-ACATTGTATATTTTGAGTGTATTTTAAAATTTTG--TTTTGTTTCCAACAC------TTTATTTATGTT-GCGTGAAACAATTTGTGAGTGACCCT--GAGA-T-TGTGTATGGCTTGAACCT-GGTGATATCTAGTGTCTCCCCAAGTGG------------TTTGTTAAAGTTTTGGATAATTAGAAGTATTTCTTAAATAAGTAAATATTTCAGTAAATAT
i cerAty1.NW_012002921v1       C 0 I 2
s chlSab2.chr2                  66453461 376 +  90373283 TCTGAGTCTTAAAAGATGAAAATACATTTTTCAGAATTGTAG-----AACATTT------------------GCGATGTA-------AAAAACGGGGTGCACACTAATTACAGTATA------AAC---AATAAT---TTTGCAGATTATTAGTAACTGT---CAACTCAA---TTAGTGTGTTGTTAAAAAGATACTGTTATGAAGT-----ACAG-------TAAAGTGTT-ACTTTGTATATTTTGAGTGTATTTTAAAATTTTG--TTTTGTTTCCAGCAG-TTTTGTTTATTTATGTT-GGGTGGAACAATTTGTGAGTGACCCT--GAGA-T-TGTGTATGGCTTGAACCC-GGTGGTATCTAGTGTCTCCCCAAGTGG------------TTTGTTAAAGTTTTGGATAATTAAAAGTATTTCTTAAATAAGTAAATATTTCAGTAAACAT
i chlSab2.chr2                 C 0 I 2
s manLeu1.NW_012105442v1         1503902 378 -   1547936 TCTGAGTCTTAAAAGATGAAAATACATTTTTCAGAATTGTAG-----AACATTT------------------GCGATGTA-------AAAAACAGGGTGCACACTAATTACAGTATAA--A-CAAC---AATAAT---TTTGCAAATTATTAGTAACTGC---CAACTCAA---TTAGTGTGTTGTTAAAAAGATACTGTTATGAAGT-----ACAG-------TAAAGTGTT-ACATTGTATATTTTGACTGTATTTCAAAA-TTTG--TTTTGTTTGCAACAG-CTTTGTTTATTTATATT-GGGTGGAACAATTTGTAAGTGACCCT--GAGA-T-TTTGTATGACTTGAACCT-GGTGATACCTAGTGTCTCCCCAAGTGG------------TTTGTTAAAGTTTTGGATAATTAGAAGTATTTCTTAAATAAGTAAATATTTCAGTAAACAT
i manLeu1.NW_012105442v1       C 0 I 2
s colAng1.NW_012121088v1           19442 378 +    168452 TCTGAGTCTTAAAAGATGAAAATACATTTTTCAGAATTGTAG-----AACATTT------------------GCGTTGTA-------AAAAATGGGGTGCACACTAATTAAGGTATAA--A-CAAT---GATAAT---TTTGCAAATTATTAGTAACTGC---CAACTCAA---TGAGTGTGTTGTTAAAAAGATACTGTTATGAAGT-----ATAG-------TAAAGTGTT-ACACTGTATATTTTGACTGTATTTCAAAA-TTTG--TTTTGTTTGCAACAG-CTTTCTTTATTTATATT-GGGTGGAACAATTTGTGAGTGACCCT--GAGA-T-TTTGTATGGTTTGAACAT-GGTGATACCTAGTGTCTCCCCAAGTGG------------TTTGTTGAAGTTTTGGATAATGAGAAGTATTTCTTAAAGAAGTAAATATTTCAGTAAATAT
i colAng1.NW_012121088v1       C 0 I 2
s calJac3.chr1                 130383572 386 - 210400635 TTGGAGTCTTCAGTAATGAAAATAAATATGTCAGAATAGTAGAGGAAAACCTTT------------------CAGAAGTT-------AAAAACAGGGTGCACCCTAATAAAGATACAA--A-TGGTAACAATAAT---TTTGAAAA-TATTAGTAAATATCAACTGCTTAA---CATGT----TGTTCAAAAGATACTATTATGAAGTAGAGAATAG-------TAAAATGTTAACTTTGTTTGTTTTTACTATATTTTAAAC-------TTTTGTTTCCAGCAG-TTTTGTTTATTTATGTT-GGGTGGAACAACTTGTGGGTGACTCT--AAAATT-TTTGCATGGTTTGAACCT-GCTGGTATCTAGTGTCTCTCCAAGTGG------------TTTGTTGAAA-TTTAGATAATTAGAAGTATTACTTAAAGATATAAACATTCCAGTAAACAT
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1060700 375 +   1314817 tctgagtcttaaaagatgaatataaatttgtcCGAATAGTAGAG----ATATTT------------------GAGATGTA-------AAAAATGGGGTGCACACTAATTAAGGTATAA--A-AAGT---AATAAT---TTTGCAAATTATTAGTAACTGC---CTACTCAA---TAAGTATA-TTTTAAAAAGATACTGTTATGACTT-----ATGG-------TAAAGTGTT-ACAGTGTATATTTCTACCATATTTTTTAAT--TG--TTTTGTGTCCATCAG-TTTTGTTTAT---TGTT-GGGTGCAACAATTGGTGAGTGACCCT--GAGA-T-TTTGTATGGCTTGAACCTGGGTGATATCCAGTGTCTCCCCAAGTGG------------TTTGTTGAAGTTTTGGATAGTTAAAAGTAGTTCTTAAAGAAGTAAATATTTCAGTAAACAT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6413573 386 -   6597006 tctgagtcttaaaagatgaaaataaatttgtccgaatagtagaggaagacattt------------------gagatgta-------aaaaatgggatgcacaCTAATTAAGGTATAA--A-AAGTAACAATAAT---TTTGCAAATTATTAGTAACTGC---CTACTCAA---TTAGTGTG-TGTTAAAAAGATATTGTTATGAAGT-----ATAG-------TAAAGTGTT-ACATTGCATATTTCTACTGTATTTTTAAATTATG--TTTTGTGTCCATCAG-TTTTGTTTATTTATGTT-GGGTGCAACAATTGGTGGGTGACCCT--GAGA-T-TTTATATAGCTTGAACCT-GGTGATACCCAATGTCTCCCCAAGTGG------------TTTGTTGAAGTTTTGGATGGTTAGAAGTAGTTCTTAAAGAAGTAAATATTTTGGTGAACAT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19652049 317 -  27850971 TCTGAGTCTTAAAAGTTGGAAAGAAGT-TGTCAGAATAATGGAGAAAAACATTT------------------CAGATGTA-------AAGAGTAGAATGTACACTGATAAAGGTATAA--A-TGGT---AGCAGTTCATTTGCAAAGCATTAATGAA------CAGCATGC---TTAGCCTGTTGTTAAAAAGGTATTGTTATGAAGT-----AGAGAACAGTATACAGTATT-ACTTCATATGTTTCTACTATATTTTAAGGTTTCT--TTT----------------------------CT-GG--------------------------------------------------T-GGTGATGTCTTGTGTCTCCCCAAGTGG------------TTTGTTGACTTTTTGGATGATTAGAAGTATTTCTTAAAGAAGGAAATATTTCACTTAAGAT
i otoGar3.GL873538             I 35 C 0
s canFam3.chr2                  79104840 412 -  85426708 TCTTAGTCCTAAAAGATGCAAATAAATTTGCTA-AGTAGTAGAGGAAAACATTTCATAATGTTTGCTCCTCAGGGACATACACCCATAGGGACAAGGT--ACACTAATAAAGGCATGA--A-AAGTACTAGTAAT---TTTGGAAATGATGAATAATGCT---GTGGTTGAAGCTTAGGGTGTT----AAGAGTTACTGTTACAAAGTAGAAAATAA-------TCTCTTGTG-ATTTTATATGTTTCTACTGTATTTTAAATTTTTG--TTTTCTTTCTGATTG-TTTTATTCATTGATGTT-AAGTGGATGAATTTCTGAATGAATCTTGGAGA-TGTTTGTGTGCCTTTAACCT-GGTGACATTTAGTATTTCT-CAAATGG------------TTTGTTGAAATTTTAGATAATTAGAAGTATTTCTTA---AAGTAAACTTTCAACTAAAGAT
i canFam3.chr2                 I 143 C 0
s dasNov3.JH570393               1728629 353 -   2296528 ----------AAAGGATATA---------------------------AACACTT------------------CAGATTCA-------GGGA--TAGGTATACGCTGATAGAGGTAAAA--AGTAAC---AGTACT---TTTGGAAACCACAAATAATGTT---GTAGTTGAATCTTAGAGTGTTGTTAAAGA-ATACTTTCATGAAGTGGAGAATAG------TTACAGTGTG-CTTTTATATGTTTCTACCATATTT------TTTA--TTTTGTTTTTGATTGTTTTTGTTTAATTATGTT-GGATGGATGAATTCGTGAATGAATCTTTAAGC-TGTTTATATTTCTTGAACCT-GGTGACATCTA--GTCTTTCCAAGTGGACTATTGAACCATTTGCTGAAGTTTTGGATAAT---------TTCTTAAAGAAATAAATACTCAGCTAAAGAT
i dasNov3.JH570393             C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e saiBol1.JH378105              64642729   0 -  72162052 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=217694.000000
s hg38.chr14_GL000009v2_random     28050 41 +    201709 T--GTTTCATTCAAACTCTCAAAATATAAAATACAAAGAAATG
s panTro5.chr9                  41704024 41 + 116767853 T--GTTTCATTCAAACTCTCAAAATATAAAATACAAAGAAATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96049455 36 - 114479721 TAAGCTTCATTTAAACTCTCAAAATAT-------AAAGAAATG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85075 41 -    416926 TAAGCTTCATT-AAACTCTCAAAATATAAAA-ACAAAGAAATG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822063 43 + 122973662 TCAGCTTCACTTAAACTCTCAAAATATAAAATACAAAGAAATG
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          356781 41 +    434444 --AGCTTCATTTAAACTCTCAAAATATAAAATACAAAGAAATT
i macNem1.NW_012012823v1       I 2 C 0
s cerAty1.NW_012002921v1          404079 41 -    438202 --AGCTTCTTTTAAACTCTCAAAATATAAAATACAAAGAAATT
i cerAty1.NW_012002921v1       I 2 C 0
s chlSab2.chr2                  66453839 41 +  90373283 --AGCTTCATTTAAACTCTCAAAATATAAAATACAAAGAAATT
i chlSab2.chr2                 I 2 C 0
s manLeu1.NW_012105442v1         1504282 41 -   1547936 --AGCTTCATTTAAACTCTCAAAATATAAAATACAAAGAAATT
i manLeu1.NW_012105442v1       I 2 C 0
s colAng1.NW_012121088v1           19822 41 +    168452 --AGCTTCATTTAAACTCTCAAAATATAAAATACAAAGAAATT
i colAng1.NW_012121088v1       I 2 C 0
s calJac3.chr1                 130383958 36 - 210400635 TAAGCTTAATGTAAACTCCCAATTTATAAAA-------GTATG
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1061075 43 +   1314817 TAAGCTTCATTTAAACTCTCCATACACAAAATAAAAATAAATG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6413959 43 -   6597006 TAAGCTTCATTTAAACTCTCCATACATAAAATAAAAATAAATG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19652366 37 -  27850971 TAAGCTTCATTTAAACTCTCAATTTATAAAAT------AAATG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79105252 27 -  85426708 ------TAATTTAAACTCTTAATTGATAAAATA----------
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1728982 33 -   2296528 TAACCTTAATTTAAATTCTCAGTTGTAATAATG----------
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   516653 138 - 111343173 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e saiBol1.JH378105              64642729  0 -  72162052 C
e macFas5.chr13                111080989 17496 - 111193037 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=204677.000000
s hg38.chr14_GL000009v2_random     28091 32 +    201709 TTATTCTCTATTTATTTTTATAAAGATTATAG
s panTro5.chr9                  41704065 32 + 116767853 TTATTCTCTATTTATTTTTATAAAGATTATAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96049491 32 - 114479721 TTATTCTTTATTTATTTTTATAAAGATTATCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85116 32 -    416926 TTATTCTCTATTTATTTTTATATAGATTATAG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822106 26 + 122973662 TTATTCTC------TTTTTATAAAGATTATAG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111098485 28 - 111193037 TTATTCTC----TATTTTTATAAAGATTATAG
i macFas5.chr13                I 17496 C 0
s macNem1.NW_012012823v1          356822 28 +    434444 TTATTCTC----TATTTGTATAAAGATTATAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          404120 28 -    438202 TTATTCTC----TATTTTTATAAAGATTATAG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66453880 28 +  90373283 TTATTCTC----TATTTGTATAAAGATTATAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1504323 28 -   1547936 TTATTCTC----TATTTGTATAAAGATTATAG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           19863 28 +    168452 TTATTCTC----TATTTGTATAAAGATTATAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130383994 32 - 210400635 TTGTTATGTTTCCATTTTTATAAAAATTATAG
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1061118 32 +   1314817 CTATTCTCCAGTCACTTTTATAAAGATTGTAG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414002 32 -   6597006 CTATTCTCCAGTCACTTTTATAAAGATTGTAG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19652403 28 -  27850971 TCAATTTT----TATTTTTATGATAACTATGG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79105279 27 -  85426708 TTATTTTC----TATTTTTATAGAGGTAAAA-
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1729015 30 -   2296528 TTATTTTG--TTTATTTTTGTAAAGATGGTAT
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   516653 138 - 111343173 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e saiBol1.JH378105              64642729  0 -  72162052 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=707465.000000
s hg38.chr14_GL000009v2_random     28123 77 +    201709 TCTTTATCTAACTCTTCT---TAGTTCATTTGAACTAAATCAATGAATTTGTCAACAGAACAAACCTTACCAGTGGCTTT
s panTro5.chr9                  41704097 77 + 116767853 TCTTTATCTAACTATTCT---TAGTTCATTTGAACTAAATCAATGAATTTGTCAACAGAACAAACCTTACCAGTGGCTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96049523 76 - 114479721 TCTTTATCTAACTCTTCT---TAGTTCATTTGAACTAAACCAGTGAATTTGTCAACAGAACAAGCCTTACCAGTGGCTT-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85148 77 -    416926 TCTTTATCTAACTGTTCT---TAGTTCATTTGAACTAAACCAATGAATTTGTCAACAGAACAAGCCTTACCAGTGGCTTC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822132 77 + 122973662 TATTTATCTAACTGTTCT---TAGTTCATTTGAACTAAACCTATGAATTTGTCAACAGAACAAGCCTTACGAGAGGCTTC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111098513 77 - 111193037 TCTTTATCTAACTGTTCT---TAGTTCATTTGAACTAAACCAATGAATTTGTCAACAGAACAAGCCTTACTAGTGGCTTC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          356850 77 +    434444 TATTTTTTTAACTGTTCT---TAGTTCATTTGAACTAAACCAATGAATTTGTCAACAGAACAAGCCTTACTAGTGGCTTC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          404148 77 -    438202 TCTTTATCTAACTGTTCT---TAGTTCATTTGAACTAAACCTATGAATTTTTCAACAGAAGAAGACTTACTAGTGGCTTC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66453908 77 +  90373283 TATTTATTTAACTGTTCT---TAGTTCATTTGAACTAAACCTATGAATTTTTCAACAGAAGAAGACTTACTAGTGGCTTC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1504351 77 -   1547936 TATTTATTTAACTGTTCT---TAGTTCATTTGAACTAAACCTATGAATTTTTCAACAGAAGAAGACTTACTAGTGGCTTC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           19891 77 +    168452 TATTTATTTAACTGTTCT---TAGTTCATTTGAACTAAACCAATGAATTTGTCAACAGAACAAGCCTTACTAGTGGCTTC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384026 76 - 210400635 TCTTT----AACTGTTCTAAGTCATCCATTTTAACTAAACATATGGATTTTTCAGTAGAATATGACTTAAAAGTTGCTTC
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64642729 80 -  72162052 TCTTTATCCAACTGTTCTGTGTAGTTCATTTTAACTCAACCTATGTATTTGTCAGCAGGACAAGACTTCCTAGTGGATTC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1061150 80 +   1314817 TCTTTATCCAACTGTTCTACATAGTTCATTTTAACTCAATCTATGTATTTGTCAGCAGGACAAGACTTCCTAGTGGATTC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414034 80 -   6597006 TCTTTATCCAACTGTTCAACGTAGTTCATTTTAACTCAACCTATGTATTTGTCAGCAGGACAAGGCTTCCTAGTGGATTC
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19652431 78 -  27850971 CTTTCATCTAACTGTTCT--GTCATTCACTTTAACTCAAAATATGGATTTGTCAGCAGAACATGACTTAGAAGTTACATC
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79105306 80 -  85426708 CTTTTATCTAACCATTCTAAGTAGCCTGTTTTAATTAAATCTATAGATTTGTCAGCAGAACTAGATTTAGAAGTGGCATC
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1729045 80 -   2296528 CTTTTATCTAACTGTTCTAAGTAGTTTATTTTAACTAAATATATAGATATGTCAGCAGAACTAGACTTAAAAATGATATC
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   516653 138 - 111343173 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=788909.000000
s hg38.chr14_GL000009v2_random     28200 64 +    201709 AGAGGAAGAGCAAGAAAGGTGTGAAAGAAGTGAAAAGAAGCAATCACAGGTATATGAA-AATTTA
s panTro5.chr9                  41704174 64 + 116767853 ACAGGAAGAGCAAGAAAGGTGTGAAAGAAGTGAAAAGAAGCAACCACAGGTATATGAA-AATTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96049599 60 - 114479721 ----GAGGAAGAAGAAAGGTGTGAAAGAAGTGAAAAGAAGCAACCACAGGTATATGAA-AATTTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85225 64 -    416926 AGAGGAAGAGCAAGAAAGGCATGAAAGAAGTGAAAAGAAGCAACCACAGGTATATGAA-AATTTA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822209 64 + 122973662 AGAGGAAGAGCAAGAAAGGCTTGAAAGAAGTGAAAAGAAGCAACCACAGGTATATAAA-AATTTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   516791 64 - 111343173 AGAGGAAAAGCAAGAAAGACTTGAAAGAAGTGAAAATAAACAGCCACAGGTATATAAC-AATTTA
i rheMac8.chr15                I 138 C 0
s macFas5.chr13                111098590 64 - 111193037 AGAGGAGGAGCAAGAAAGGCATGAAAGAAGCGAAAAGAAGCAACCACAGGTATATAAA-AATTTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          356927 64 +    434444 AGAGGAAGAACGAGAAAGGCTTGAAAGAAGTGAAAAGACGCAACCACAGGTATATAAA-AATTTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          404225 64 -    438202 AGAGGAAGAGCGAGAAAGGCTTGAAAGAAGTGAAAAGAAGCAACCACAGGTATATAAA-AATTTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66453985 64 +  90373283 AGAGGAAGAGCGAGAAAGGCTTGAAAGAAGTGAAAAGAAGCAACCACAGGTATATAAA-AATTTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1504428 64 -   1547936 AGAGGAAGAGCGAGAAAGGCTTGAAAGAAGTGAAAAGAAGCAACCACAGGTATATAAA-AATTTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           19968 64 +    168452 AGAGGAAGAGCAAGAAAGGCATGAAAGAAGTGAAAAGAAGCAACCACAGGTATATAAA-AATTTA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384102 64 - 210400635 AGAGGAAACGCCAGAAAGGCTTGAGAGAAGTGAAAATATACAGCCACAGGTATATAAC-AATTTA
i calJac3.chr1                 C 0 I 6
s saiBol1.JH378105              64642809 64 -  72162052 AGAGGAAGAGCAAGAAAGCCTTGAAATAAGTGAAAAGAAGGAACCAGAGGTATAGAAA-CATTTA
i saiBol1.JH378105             C 0 I 6
s cebCap1.NW_016107851v1         1061230 65 +   1314817 AGAGGAAGAGCAAGAAAGGCTTGAAAGAAGTGAAAAGAAGGAACCAGAGGTATAGACCACATTTG
i cebCap1.NW_016107851v1       C 0 I 6
s aotNan1.NW_018488791v1         6414114 64 -   6597006 AGAGGAAGAGCAAGAAAGGCTTGAAAGAAGTGAAAAGAAGGAGCCAGAGGTATAGAAA-CATTTA
i aotNan1.NW_018488791v1       C 0 I 39
s otoGar3.GL873538              19652509 64 -  27850971 AGAGGAAGAGCAAGAAAGTCTTGAAGGAAGGGAAAATAACCAGCCACAGGTATGGAAA-AATTTA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79105386 64 -  85426708 AGAGGAAGAGCAAGAAAGACCCGATGAAAGTGAAAATAACCACCCACAGGTATGtaaa-aattta
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1729125 64 -   2296528 AGAGGAAGAGCAAGAAAGGCTTGACGGAAGTGAAAATAACCAGCCACAGGTATGTAAA-AATTTA
i dasNov3.JH570393             C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=13923.000000
s hg38.chr14_GL000009v2_random     28264 1 +    201709 A
s panTro5.chr9                  41704238 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96049659 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85289 1 -    416926 A
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822273 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   516855 1 - 111343173 A
i rheMac8.chr15                C 0 I 49
s macFas5.chr13                111098654 1 - 111193037 A
i macFas5.chr13                C 0 I 1
s macNem1.NW_012012823v1          356991 1 +    434444 A
i macNem1.NW_012012823v1       C 0 I 1
s cerAty1.NW_012002921v1          404289 1 -    438202 A
i cerAty1.NW_012002921v1       C 0 I 1
s chlSab2.chr2                  66454049 1 +  90373283 A
i chlSab2.chr2                 C 0 I 1
s manLeu1.NW_012105442v1         1504492 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 I 1
s colAng1.NW_012121088v1           20032 1 +    168452 A
i colAng1.NW_012121088v1       C 0 I 1
s calJac3.chr1                 130384172 1 - 210400635 A
i calJac3.chr1                 I 6 C 0
s saiBol1.JH378105              64642879 1 -  72162052 A
i saiBol1.JH378105             I 6 C 0
s cebCap1.NW_016107851v1         1061301 1 +   1314817 A
i cebCap1.NW_016107851v1       I 6 C 0
s otoGar3.GL873538              19652573 1 -  27850971 A
i otoGar3.GL873538             C 0 I 6
s canFam3.chr2                  79105450 1 -  85426708 a
i canFam3.chr2                 C 0 I 6
s dasNov3.JH570393               1729189 1 -   2296528 A
i dasNov3.JH570393             C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6414178 39 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=65255.000000
s hg38.chr14_GL000009v2_random     28265 30 +    201709 ------G-TTCTTGTTTAATATTA-----------GGTT---TTTTTTGCT
s panTro5.chr9                  41704239 34 + 116767853 ------G-TTCTTGTTTAATATTA------TTT-TTTTT---TTTTTTGCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96049660 33 - 114479721 ------G-TTCTTGTTTAATATTA-------TG-TTTTT---TTTTTGGCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85290 34 -    416926 ------GTTTCTTGTTTAATATTG-------GG-TTTTT---TTTTTTGCT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822274 32 + 122973662 ------GTTTCTTGTTTAATATTG----------GGTTT---TTTTTTGCT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111098656 40 - 111193037 -------TTTCTTGTTTAACAttgttttctttt-ttttt---ttttttGCT
i macFas5.chr13                I 1 C 0
s macNem1.NW_012012823v1          356993 34 +    434444 -------TTTCTTGTCTAATATTG------GTG-GGTTT---TTTTTTGCT
i macNem1.NW_012012823v1       I 1 C 0
s cerAty1.NW_012002921v1          404291 32 -    438202 -------TTTCTTGTCTAATATTG--------G-TTTTT---TTTTTTGCT
i cerAty1.NW_012002921v1       I 1 C 0
s chlSab2.chr2                  66454051 32 +  90373283 -------TTTCTTGTCTAATATTG--------G-TTTTT---TTTTTTGCT
i chlSab2.chr2                 I 1 C 0
s manLeu1.NW_012105442v1         1504494 33 -   1547936 -------TTTCTTGTCTAATATTG--------GTTTTTT---TTTTTTGCT
i manLeu1.NW_012105442v1       I 1 C 0
s colAng1.NW_012121088v1           20034 25 +    168452 -------TTTCTTGTTTAACATTT-------------------TTTTGGCT
i colAng1.NW_012121088v1       I 1 C 0
s calJac3.chr1                 130384173 25 - 210400635 ------ATTTCCAAATTAATATTG------------------TTTTTTA--
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64642880 36 -  72162052 ------ATTTCT-TATTAATATTG-------GA-CTTTTTTTTTTTTTGCT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1061302 33 +   1314817 ------ATTTCT-TATTAATATTG-------GG-CTTTT---TTTTTGGCT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19652580 29 -  27850971 ------ATTGCTGTTTTAATTTTG-------------TT---TTCTTTACA
i otoGar3.GL873538             I 6 C 0
s canFam3.chr2                  79105457 29 -  85426708 ------atttCTGATTTTATATTG-------------TT---TTCCCTGCT
i canFam3.chr2                 I 6 C 0
s dasNov3.JH570393               1729190 34 -   2296528 ATTTAAGTTTCTGGTATAATATTG----------TTTCC---ATGTT----
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   516856 49 - 111343173 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6414178 39 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=93567.000000
s hg38.chr14_GL000009v2_random     28295 11 +    201709 TTACTAACAAA
s panTro5.chr9                  41704273 11 + 116767853 TTACTAACAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96049693 11 - 114479721 TTACTAACAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85324 11 -    416926 TTAGTAACAAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822306 11 + 122973662 TTAGTAACAAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111098696 11 - 111193037 TTAGTAAGAAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357027 11 +    434444 TTAATAACAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          404323 11 -    438202 TTAATAACAAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454083 11 +  90373283 TTAATAACAAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1504527 11 -   1547936 TTAATAACAAC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20059 11 +    168452 TTAGTAACAAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384198  9 - 210400635 --AATAACATA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64642916 11 -  72162052 TTAGTAACAAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1061335 11 +   1314817 TTAGTAACAAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414217 11 -   6597006 TTACTAACAAA
i aotNan1.NW_018488791v1       I 39 C 0
s otoGar3.GL873538              19652609 11 -  27850971 TTAAGAACGTT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79105486 11 -  85426708 TTACTAATGTA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1729224 11 -   2296528 TTAAAAACTAG
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   516856 49 - 111343173 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1185791.000000
s hg38.chr14_GL000009v2_random     28306 134 +    201709 GCATAGTCCAAATGACATGACCTTT-CAGACTATACCTTTAGAATCCAATAGATCATAATTTTATATTTAATTTTTAAAACATCTTAACCAGTTATGAAACTTAAGATATTCTTACTATCTCTAGTAACTATTAG
s panTro5.chr9                  41704284 131 + 116767853 GCATAGTCCAAATGACATCACCTTT-TAGACTATAGCTTTAGAATCCAATAGATCATAATTTTATATTTAATTTTTAAAACATTTTAACCATTTATGAAACTTAAGATATTCTTACTA--TCTAGTAACT-TTAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96049704 132 - 114479721 GCATAGTCCAAATGACATCACCTTT-TAGACTATAGCTTTAGAATCCAATAGATCATAATTTTATATTTAATTTTTAAAACATTTTAACCAGTTATGAAACTTAAGATATTCTTACTA--TCTAGTAACTATTAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85335 134 -    416926 GCATAGTCCAAATGACATGACCTTT-TAGACTATACCTTTAGAATCCGATAGATCATAATTTTATATTTAATTTTTAAAACATTTTAACCAGTTATGAAACTTAAGATATTCTTACTATCTCTAGTAACTATTAG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822317 112 + 122973662 GTGTAGTCCAAATGACATGACCTTT-TAGACTGTACCTTTATAATCCAATAGATCATA-----ATATTTAATATTTAAAGCATTTTAACCAGTTATGAAACTGAAGATATTCCTACCA-----------------
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   516905 116 - 111343173 GCATAGTCCAAATGAAGTGACCTTT-TAGACTATCCTTTTAGAATCCAACAGAGCATAATTTCATATTGAA-TTTTAAAACATTTTAGCCAGTTATAAAATTTGAAATATTCTTACCA-----------------
i rheMac8.chr15                I 49 C 0
s macFas5.chr13                111098707 117 - 111193037 GCATAGACCAAATGACATGACCTTT-TAGAATATACCTTTAGAATCAAATGGATCATAATTTTATATTCAATTTTTAAAACATTTTAACCTGTTACAAAACCTAAGATATTCTTACTA-----------------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357038 116 +    434444 GTGTAGTCCAAATGACATGACCTTT-TAGACTATACCTTTAGAATCCAATAGATCATAATTTTAAATTTAATTTTTAAAACA-TTTAACCACTTATGAAACTTAAGATATTCCTACCA-----------------
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          404334 116 -    438202 GTGTAATCCAAATGACATGACCTTT-TAGACTATACCTTTAGAATCCAATAGATCATAATTTTATATTTAATTTTTAAAACA-TTTAACCACTTATGAAACTTAAGATATTCCTACCA-----------------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454094 116 +  90373283 GTGTAGTCCAAATGACATGACCTTT-TAGACTATACCTTTAGAATCCAATAGATCATAATTTTAAATTTAATTTTTAAAACA-TTTAACCACTTACGAAACTTAAGATATTCCTACCA-----------------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1504538 116 -   1547936 GTGTAGTCCAAATGACATGACCTTT-TAGACTATACCTTTAGAATCCAATAGATCATAATTTTAAATTTAATTTTTAAAACA-TTTAACCACTTATGAAACTTAAGATATTCCTACCA-----------------
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20070 117 +    168452 GCATAGACCAAATGACATGACCTTT-TAGACTATACCTTTAGAATCCAATGGATCATAATTTTATATTCAATTTTTAAAACATTTCAACCTGTTATGAAACTTAAGATATTCTTACTA-----------------
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384207 116 - 210400635 ACATAGTCCAAATGAAGTGACCTTT-TTGACTGTCCTTTTAGAATCCAACAGCTCATAATTTCATTTTTAA-TTTGAAAACATTTTAATCAGTTATAAAATCTGAAATATTCTTTCAG-----------------
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64642927 117 -  72162052 GCATGGTCCAAATGACATGACCTTT-TAGACTATACTTTTAGAATCCAATTGATCataattttatatttaatttttaaaacattttaatCATTTATGAACCTTAAGATAGTCTTACCA-----------------
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1061346 117 +   1314817 GCGTGGTCCAAATGACATGTCCTTT-TAGACTATACTTTTAGAATCCAATAGATCATAATTTTGTATTTAATTTTTAAAACATTTTAACCAGTTATGAAACTTAAGTTATTCTTATCA-----------------
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414228 117 -   6597006 GCATGGTCCAAATGACATCACCTTT-TAGACTATACTTTTAGAATCCAATAGATCATAATTTTATATTTAATTTTTAAAACATTTTAACCATTTGTGAAACTTAAGATATTCTTACCA-----------------
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19652620 110 -  27850971 GCATAGTCCAAATGAAATTGCCTTTCCCCACTAACCATTTTGAATC-ATTAGATCata-------atttaatttaaataatattttaactagttataaaagttaaaatattCTTAGAA-----------------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79105497 114 -  85426708 ACATGGTTCAAGTGAAATTATCTTT---GAGCAGACATATTGAAATCAACatattataatttaatatttagttttaataaaaCTTTA-CAAGTTACAAAACTTAAAATATTGTTGTAA-----------------
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1729235 131 -   2296528 --CTAATCCAAATGAAATTATATTT-TGGACTAGACTATTAAAATCTA-TAGATCataatttaatatttaatttttGAAACATTTTAACAACTTATAAACCTTAAAATATTCCTAGAATCTTTAGCAGCTTATAG
i dasNov3.JH570393             C 0 M 830
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=538811.000000
s hg38.chr14_GL000009v2_random     28440 78 +    201709 TTATTCTAGTAATTCTTAGTATCTCTAGTAACTCATAGTTG-TCTTTACCCTTGGAATTGAGGCAAG---------------------AAATTTTCAGAA
s panTro5.chr9                  41704415 78 + 116767853 TTATTCTAGTAATTCTTAGTATCTCTAGTAACTCATAGCTG-TCTTTACCCTTGGAATTGAGGCAAG---------------------AAATTTTCAGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96049836 78 - 114479721 TTATTCTAGTAATTCTTAGTATCTCTAGTAACTCATAGCTG-TCTTTACCCTTGGAATTGAGGCAAG---------------------AAATTTTCAGAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85469 77 -    416926 TTATTCTGGTAATTCTTACTATCTCTAGTAACTCATAGCTG-TCTTTACCCTTGGAATTGAGGCAAG----------------------AATTTTCAGAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822429 57 + 122973662 ---------------------TCTGTAGTAACTCATAGCTG-TCTTTACACTTGGAATTGAGGCAAG---------------------AAACTTCCAGAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   517021 57 - 111343173 ---------------------TCTGTAGTAACTCATAGCTA-TCTGTACCTTTGGAATTGAGGCCAG---------------------AAATTTCCAGAA
i rheMac8.chr15                C 0 I 163
s macFas5.chr13                111098824 51 - 111193037 ---------------------TCTCTAGTAATTCATAGTTG-TCTTTACCCTTGGAATTGAGGCAAG---------------------AAATCT------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357154 57 +    434444 ---------------------TCTGTGGTAACTCATAGCTG-TCTTCACCTTTGGAATTGAGGCAAG---------------------AAATTTCCAGTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          404450 57 -    438202 ---------------------TCTGTGGTAACTCATAGCTG-TCTTTACCTTTGGAATTGAGGCAAG---------------------AAATTTCCAGTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454210 57 +  90373283 ---------------------TCTGTGGTAACTCATAGCTG-TCTTTACCTTTGGAATTGAGGCAAG---------------------AAATTTCCAGTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1504654 57 -   1547936 ---------------------TCTGTGGTAACTCATAGCTG-TCTTCACCTTTGGAATTGAGGCAAG---------------------AAATTTCCAGTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20187 57 +    168452 ---------------------TCTCTAGTAACTCATAGCTG-TCTTTACCTTTGGAATCGAGGCAAG---------------------AAATTTCCAGTA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384323 57 - 210400635 ---------------------TCTGTAGTAACTCATAGCTG-TCTTTACCCTTGGAATTGAGGCCAG---------------------AAATTTCCAGAA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64643044 57 -  72162052 ---------------------CTTCTAGTAACTCATAGCTA-TCTTTACCCTTGGAATTGAGGCAAG---------------------AAATATGCAGAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1061463 57 +   1314817 ---------------------CCTCTGGTAACTCATAGCTA-TCTTTACCCTTGGAATTGAGGCAAG---------------------AAATTTCCAGAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414345 57 -   6597006 ---------------------CCTCTAGTAACTCATAGCTA-TCTTAACCCTTGGAATTGAGGCAAG---------------------AAATTTCCAGAA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19652730 58 -  27850971 ---------------------TACATTGTTATTTATAGCTGATCTTTACCCCTGAAGTTGAGGCAAA---------------------AAGTTTCCTGAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79105611 78 -  85426708 ---------------TTTTTAGTAACGGTTACCTA-----A-ACTTCATCCTTGGAATTGAGGCAAAAACATTTTTTTTGAGGCAAAAAAATTTCTAAA-
i canFam3.chr2                 C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1729366 830 -   2296528 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1363966.000000
s hg38.chr14_GL000009v2_random     28518 161 +    201709 --TTATC--TTGCTGTTTTATTTATGTAACCTTACT-CATAATACACAAGGTAACATGAAGTATTGGGTCATATTACTGAGGAATAGAAATTATGAACAGTTTAACAACAATGGCCACTGAGTTAAACTAGTGTTAAAGGAGTCATCATTGCCAGTGTTTCAAATG-
s panTro5.chr9                  41704493 161 + 116767853 --TTATC--TTGCTGTTTTATTTGTATAACCTTACT-CATAATACACAAGGTAACATGAAGTATTGGGTCATATTACTGAGGAATAGAAATTATGAACAGTTTAACCACAATGGCCACTGAGTTAAACTAGTGTTAAAGGAGTCATCATTGCCAGTGCTTCAAAAG-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96049914 161 - 114479721 --TTATC--TTGCTGTTTTATTTGTATAACCTTACT-CATAATACACAAGGTAACATGAAGTATTGGGTCATATTATTAAGGAATAGAAATTATGAACAGTTTAACAACAATGGCCACTGAGTTAAAGTAGTGTTAAAGGAGTCATCATTGCCAGTGGTTCAGATG-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85546 161 -    416926 --TTATC--TTGCTCTTTTATTTTTATAACCTTACT-CATAATACAGAAGGTAACATGAAATATTGGGTCATATTATTAAGGAATAGAAATTATGAACAGTTTAACAACAATGGCCACTGAGTTAAAGTAGTGTTAAAGGAGTCATCATTGCCAGTGGTTCAAATG-
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822486 161 + 122973662 --TTATC--TTGCTCTTTTATTTTTATAACCTTACT-CATAATACGGAAGGTAACATGAAATATTGAGTCATATTACTAAGGAATAGAAATTATGAACAATTTAACAATGATGGCCACTGAGTTAAACTAATATTAAAGGAGTCATCATTGCCAGTGGTTCAAATG-
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111098875 152 - 111193037 -------------TCTTTTATTTTTATAACCTTACT-CTTAATACAGAAGGTAACATGAAATATTGAGTCATATTACTAAGGAATAGAAATTACGAACAATTTAACCATGACGGCCATTGAGCTAAACTAGTGCTAAAGGAGTCATCATTGCCAGCGGTTCAAATG-
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357211 161 +    434444 --TTATC--TCGCTCTTTTATTTTTATAACCTTACT-CATAATACAGAAGGTAACATGAAATATTGAGTCATATTACTAAGGAATAGAAATTATGAACAATTTAACAATGATGGCCACTGAGTTAAACTAATGTTAAAGGAGTCATCATTGCTAGTGGTTCAAATT-
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          404507 161 -    438202 --TTATC--TTGCTCTTTTATTTTTATAACCTTACT-CATAATACAGAAGGTAATATGAAATATCGAGTCATATTACTAAGGAATAGAAATTATGAACAATTTAACAATGATGGCCACTGAGTTAAACTAATGTTAAAGGAGTCATCATTGCTAGTGGTTCAAATT-
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454267 161 +  90373283 --TTATC--TTGCTCTTTTATTTTTATAACCTTACT-CATAATACAGAAGGTAACATGAAATATTGAGTCATATTACTAAGGAATAGAAATTATGAACAATTTAACAATGATAGCCACTGAGTTAAACTAATGTTAAAGGAGTCATCATTGCTTGTGGTTCAAATT-
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1504711 161 -   1547936 --TTATC--TTGCTCTTTTATTTTTATAACCTTACT-CATAATACAGAAGGTAACATGAAATATTGAGTCATATTACTAAGGAATAGAAATTATGAACAATTTAACAATGATGGCCACTGAGTTAAACTAATGTTAAAGGAGTCATCATTGCTAGTGGTTCAAATT-
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20244 155 +    168452 --TTATC--TTCCTCTTTTATTTGTATAACCTTCCT-CATAATACAGAAGGCAACATGAAATATTGAGTCATATTACTAAGGAATAGAAATTATGAACAATTTAACCATGATGGCCACTGAGTTAAACTAGCTC------AGTCATCATTGCCAGTGGTTCAAATG-
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384380 162 - 210400635 --GTCTC-TTTGCTCTTTTATTTTTAGAACCTTCTT-CATGATAAAGCAGGTAACATAGAAAATTGAGTTGTATTACTATGCAAGAGAAATTAGGAACAATTTAACAGTGTTGGTCACTGAGGTCAACTCACGTTAAAGGAGTCAGCATTGCCAGCGGTTCAGACT-
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64643101 150 -  72162052 --TTCTC--TTGCCCTTTTATTTTTATAACCTTATT-CATAATACAGAAGGTAACATGAAATACTGAGTCATATTACTAAGCAATAGAAAGTATGAACAATTTAACAATGATGGCCACTGA-----------GTTAAAGGAGTCGTCATTGCCATTGGTTCAAATT-
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1061520 150 +   1314817 --TTCTC--TTGCTTTTTTATTTTTATAACCTTATT-CATAATACAGAAGGTAACATGAAATGTTAAGTCATATTACTAAGCAATAGAAATTATGAACAATTAAACAATGATAGCCACTGA-----------GTTAAAGGAATCATCATTGCCACTGGTTCAAATT-
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414402 161 -   6597006 --TTCTC--TTGCTTTTTTATTTTTATAACCTTATT-CATAATACAGAAGGTTACATGAAATATTGAGTCATATTACTAAGCAATAGAAATTATGAACAATTTAACAGTGATGGCCACTGAGTTCGACTAATGTTAAAGGAATCATCTTTGCCAGTGGTTCAAATT-
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19652788 126 -  27850971 ---TATTGTTTGGTCTTCCATTTTTTTGACCTCTTT-------------------------------------TTCCTAAAAAATAGAAATTATAAACAATTTCACAGTGATGGCCACTGAGTTAGATTCATATTAAAGGAGTTATTGTCACCAGTGGATCAAAAC-
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79105689 162 -  85426708 TATTCTT--AGCCTCTCTCATTTTTGTAACTTCTTTACATGATAAAGAAGGTAGCTTCAAATATTGAATCATATGTTTAAGCAGTTGAAATTATGAGCAGTATAACAGTGATGACTACGGACTTAGATTCATGTACAAGGAGTAATTCT---CAGTAGTTCAAAGTG
i canFam3.chr2                 C 0 C 0
e rheMac8.chr15                   517078 163 - 111343173 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1729366 830 -   2296528 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=351044.000000
s hg38.chr14_GL000009v2_random     28679 30 +    201709 TTGCAG---TTTTATATTGCTGGTCACCAGTGC
s panTro5.chr9                  41704654 30 + 116767853 GTGCAG---TTTTATATTGCTGGTCACCAGTGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050075 30 - 114479721 TTGCAG---TTTTATATTGCTGGTCACCAGTGC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85707 30 -    416926 TTGCAG---TTTTATATTGCTGGTCACCAGTGC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822647 30 + 122973662 TTGCAG---TTTTATATTGCTGGTCACCAGTGC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   517241 30 - 111343173 TTGCAG---TTTTATGTTGCTGGTCACCAGTGC
i rheMac8.chr15                I 163 C 0
s macFas5.chr13                111099027 30 - 111193037 TTGCAG---TTTTATATTGCTGGTCATCAGTGT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357372 30 +    434444 TTGCAG---TTTCATATTGCTGGTCACCAGTGC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          404668 30 -    438202 TTGCAG---TTTCACATTGCTGGTCACCAGTGC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454428 30 +  90373283 TTGCAG---TTTCATATTGCTGGTCATCAGTGC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1504872 30 -   1547936 TTGCAG---TTTCACATTGCTGTTCACCAGTGC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20399 30 +    168452 TTGCAG---TTTTATATTGCTGGTCACCAGTGT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384542 33 - 210400635 TGGCAGGTCTTCTGTGTTGCTGGTCACCAGTGC
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64643251 30 -  72162052 TTGCAG---TTTTATGTTGCTGGTCACCAGTGC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1061670 30 +   1314817 TTGCAG---TTTTATGTTGCTGGTCACCAATGC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414563 30 -   6597006 TTGCAG---TTTTATGTTGCTGGTCACCAGTGC
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19652914 30 -  27850971 TTGCAA---TTTTATATTGCTGGTCACTAATGC
i otoGar3.GL873538             C 0 I 124
s canFam3.chr2                  79105851 30 -  85426708 TGTTAG---TTCTCTATTGCCAGTTACAAATGC
i canFam3.chr2                 C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1729366 830 -   2296528 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1618102.000000
s hg38.chr14_GL000009v2_random     28709 157 +    201709 CGAGGTTAAAGATTTATTCTGTTTTGTGG-TCAC----CAGCTGACTTCTGTGTCTGTGTTCAGGGAGTGAATGGGGTCATAAAAGTCAATGCAGTTGCCTATTAAGAGAATCCTACCTTGCAGAATGGGACCTTTGGTGTCAGGGTGTGAACAATAACT---TT
s panTro5.chr9                  41704684 157 + 116767853 CGAGGTTAAAGATTTATTCTCTTTCGTGG-TCAC----CAGTTGACTTCTCTGTCTGTGTTCAGGCAGTGAATGGGGTCATAAAAGTCAATGCAGTTGCCTATTAAGAGAATCCTACCTTGCAGAATGGGACCTTTGGTGTCAGGGTGTGAATAATAACT---GT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050105 157 - 114479721 CGAGTTTAAAGATTTATTCTCTTTCGTGG-TCAC----CAGTTCACTTCTGTGTCTGTGTTCAGGCAGTGAATGGGGTCATAAAAGTCAACCCAGTTGCCTATTAAGAGAATCCTACCTTGCAGAATGGGACCTTTGGTGTCAGGGTGCAAACAATAACT---TT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85737 156 -    416926 CGAGGTTAAAGATTTATTCTGTTTTGTGG-TCAC----CATTTGACTTCTGTGTCTGTGTTCAGGGAGTGAATGGGGTCATAAAAGTCAACCCAGTTGCCTATTAAGAGAATCCTACCTTGC-GAATGGGACCTTTGGTGTCAGGGTACAAACAATAACT---TT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822677 157 + 122973662 CGAGTTTAAAGATTTACTCTGTTTTGTGG-TCAC----CAGTTGACTTCTGTGTCTGTGTTCAGGGAGTGAATGGGGTCATAAAAGTCAACCCAGTTGCCTATTAAGAGAATCCTACCTTGCAGAATGGGACCGTTGGTGTCAGGGTACAAACAATAAAT---TT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   517271 155 - 111343173 TGAGGTTAAAGACTTCGTCTGTTTTTTGG-TTTC----TGGTTGCCTTTGGTGTCTATGTTCAGGGAGAGGATGGGGTCATAAAA-TTAACCCAACTGCCTATTGAGAGAATGATGCCTTCCAGAAAGGGACT-TTGGTGTCAGGGTACAAACAATAACT---TT
i rheMac8.chr15                C 0 I 154
s macFas5.chr13                111099057 157 - 111193037 CGAGTTTAAAGATGTATTCTGTTTTGTGG-TCGC----CAGTTGACTTCAGTGTCTGTGTTCAGGAAGTGAATGGGGTCATAAAAGTCAACCCAGTTGCCTATTAAGAGAATCCTACCTTGCAGAATGGGACTTTTGGTGTCAGGGTACAAACGATAACT---TT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357402 155 +    434444 CGAGTTTAAAGATTTAT--TGTTTTGTGG-TTGC----CAGTTGACTTCAGTGTTTGTGTTCAGGGAGTGAATGGGGTCATAAAAGTCAACCCAGTTGTCTGTTAAGAGAATTATACCTTGCAGAATGGGACCGTTGGTGTCAGGGTACAAACAATAACT---TT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          404698 157 -    438202 CGAGTTTAAAGATTTATTCTGTTTTGTGG-TTGC----CAGTTAACTTCAGTGTTTGTGTTCAGGGAGTGAATGGGGTCATAAAAGTCAACCCAGTTGCGTATTAAGAGAATCCTACCTTGCAGAATGGGACTTTTGGTGTCAGGGTACAAACGATAACT---TT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454458 157 +  90373283 CGAGTTTAAAGATTTATTCTGTTTTGTGG-TTGC----CAGTTGACTTCACTGTTTGTGTTCAGGGAGTGAATGGGGTCATAAAAGTCAACCCTGTTGTCCATTAAGAGAATTATACCTTGCAGAATGGGACCGTTGGTGTCAGGGTACAAACAATAACT---TT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1504902 156 -   1547936 CGAGTTTAAAGATTTATT-TGTTTTGTGG-TTGC----CAGTTGATTTCAGTGTTTGTGTTCAGGGAGTGAATGGGGTCATAAAAGTCAACCCAGTTGTCTGTTAAGGGAATTATACCTTGCAGAGTGGGACCGTTGGTGTCAGGGTACAAACAAGAACT---TT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20429 157 +    168452 CGAGTTTAAAGATTTATTCTGTTTTGTGA-TTGC----CAGTTGACTTCAGTGTTTATGTTCAGGAGGTGAATGGGGTCATAAAAGTCAACCCAGTTGCCTATTAAGAGAATCCTACCTTGAAGAATGGGACCTTTGGTGTCAGGGTACAAACAATAACT---GT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384575 160 - 210400635 CGACGTTAAAGATTTCTTCTGTTTCTTTGATCTT----TGGTTGCCTTGAGTGTCTACATCCAGGGAGAGCATGGGGTCATAAAA-TCAACCCAACTGCCTATTAAGAGAATCACGCCTACCAGAATTGGACCTTCGGTGTCAGGATACAAACAATAACTTTCTT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64643281 157 -  72162052 TGAATTTAAAGATTTATTCTGCTTTGTCG-TCTC----CAGTTGACTTCAGTGTCTGTGTTCAGGGAGAGAATGGGGTCATAAAAGTCAACCCAGTTGCCTATTAAGAGAATCATACCTTCCAGAATGGGAACTTTGGTGTCAGGGTACAAACAATAACT---TT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1061700 157 +   1314817 TGAATTTAAAGGTTTATTCTGTTTTGTGG-TCTC----CAGCTGACTTCAGCGTCTGTGTTCAGGGAGAGAATGGGGTCATAAAAGTCAACCCAGCTGCCTATTAAGAGAATCATACCTTGCAGAATGGGACCTTTGGTGCCAGGGTACAAACAATAACT---TT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414593 157 -   6597006 TGAATTTAAAGATTTATTCTCTTTTGTGG-TCTC----CAGTTGACTTCAGTGTCTGTGTTCAGGGAGAGAATGGGGTCATAAAAGTCAAGCCGGTTGCCTATTAAGAGAATCATACCTTGCAGAATGGGAACTTTGGTGTCAGGGTACAAACAATAACT---TT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19653068 156 -  27850971 CAAGGTTAAAGATTTATTCTGCCTTGTGG-TCTC----TAACTGATTTCAGTGTCTATGTTCACACAGACAATGGGGTCATGAAA-TCAACCCAACTGCCTATTAAGAGAATCATAGCTTATAGAAGGGGACCTTTAATGTCAGGGTACAAACAATAAAT---TT
i otoGar3.GL873538             I 124 I 7
s canFam3.chr2                  79105881 142 -  85426708 CAAGATTAAAGATTTATTCTGCCTTGTGA-TCTCTGTGTAGTTGACTTC-----------------AGAGAATGGAGTCACAAAA-TCAACACAATTGCCTATTG-TAGAATCACACCTTCCTGGATGGGACCTTTATAGTTGGATTATACACAATAACT---TT
i canFam3.chr2                 C 0 I 12
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1729366 830 -   2296528 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1329039.000000
s hg38.chr14_GL000009v2_random     28866 161 +    201709 ATTTCAACATAAATACATAGTAAACATTACTAAAATTTAAAAAATCCAAACCCTATCACTACCGGAACTTAAAATATATTAGAAGTGGATATAAGCAGAAATTCTATCTAGATACATAACA-----CTATCATAGTATATCATTTGAATTA---GAATTTAAAATTTTG
s panTro5.chr9                  41704841 161 + 116767853 ATTTCCACATAAATACATAGTAAATATTACTAAAATTAAAAAAATCCAAACCCTGTCACTATTGGAACTTAAAATATATTAGAAGTGGATATAAGCAGAAATTCTATCTAGATACATAACA-----CTATCATAGTATATCATTTGAATTA---GAATTTAAAAGTTTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050262 161 - 114479721 ATTTCAACATAAATACATAGTAAATATTACTAAAATTTTAAAAATCCAAACCTTGTCACTACTGGAACATAAAATATATTAGAAGTGGATATAAGCAGAAATTCTATCTAGATACATCACA-----CTATCATAGTATATCATTTGAATTA---GAATTTAAAATTTTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           85893 159 -    416926 ATTT-GACATAAATACATAGTAAATATTACTAAAATTTAAAAAATCCATCCACTATCACTAGTGGAACTTAAAATATATTAGAAATGGATATAAGCAGAAA-TCCATCTAGATACATAACA-----CTATCATAGTATATTATTTGAATTA---GAATTTAAAATTTTG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822834 161 + 122973662 ATTTCAACATAAATAAATAGTAAATATTACTAAAATTTAAAAAATCCATCCACTATCACTAGTGGGACTTAAAATATATTAGAAGTGGAGATAAGCAGAAAATCTATCTAAATACATAATA-----CTATCATAGTACATCATTTGAATTA---GAATTTAAAATTTTG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111099214 161 - 111193037 ATTTCAACATAAATACATAGTAAATATTCCTACAACTTAAAAAATCCATCCACTATCACTAGTGGAACTTAAAATATATTAAAAGTGGATATAAGCAGAAAATCTATCTAGATACATAACA-----CTATCATAGTATATCATTTGAATTG---GAATTTAAAATTTTG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357557 161 +    434444 ATTTCAGCATAAATAAATAGTAAATATTACTAAAATTTTAAAAATCCATCCGCTATCACTAGCAGAACTTAGAATATATTAGAAGTGGATATAAGCAGAAAATCTATCTAGATACATAACA-----CTATCATAGTATATCATTTGAATTG---GAATTTAAAATTTTG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          404855 161 -    438202 ATTTCAACATAAATACATAGTAAATATTCCTACAATTTAAAAAATCCATCCACTATCACTAGTGGAACTTAAAATATATTAGAAGTGGATATAAGCAGAAAATCTATCTAGATACATAACA-----CTATCATAGTATATCATTTGAATTG---GAATTTAAAATTTTG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454615 161 +  90373283 ATTTCAACATAAATACATAGAAAATATTCCTACAATTTAAAAAATCCATCCACTATCACTAGTGGAACTTAAGATATATTAGAAGTGGATATAAGCAAAAAATCTATCTAGATACATAACA-----CTATCATAGTTTATCATTTGAATTA---GAACTTAAAATTTTG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505058 161 -   1547936 ATTTCAGCATAAATAAATAGTAAATATTACTAAAATATTAAAAATCCATCCGCTATCACTAGCAGAACTTAAAATATATTAGAAGTGGATATAAGTAGAAAATCTATCCAGATACATAACA-----CTATCATAGTTTATCATTTGAATTA---GAACTTAAAATTTTG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20586 161 +    168452 ATTTCAACATAAATACATAGTAAATATTCCTACAATTTAAAAAATCCATCCACTATCACTAGTGGAACTTAAAATATATTAGAAGTAGATATAAGCATGAAATCTATCTAGATACATAACA-----CTATCATAGTATATCATTTGAATTG---GAATTTAAAATTTTG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384735 155 - 210400635 ATTTTAAC----ATAAGCAGTAAATATTACTACAACTGTTTAA-----TCCACTGTCACTAGTGGAACTTAGAATACATTAGAACTGCATATAAGCAGATTACCTATCTCTATGTATAACA-----CTCATATTACATATCAAATCACTTAAAGGAATGTAGGCATTAT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64643438 161 -  72162052 ATTTCAACataaataaatagtaaatattactaaaaattttaaaatCCTTCCACCACCATGAGTGGAAGTTAAAATATATTAGAAGTGGATATAAGCAGAAAATCTATCTAGATACATAACA-----TTATCATAATGTATCATTTGAATTA---GAATTTAAAATTCTG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1061857 138 +   1314817 ATTTCAACATGAATAAATAGTAAATATTACTAAAATTTTTAAAATCCTTCCACCATCACAAGTGG-----------------------ATATAATCAGAAAATCTATCTACATACATAACA-----CTATCATAGTGTATCATTTGAATTA---GAATTTAAAATCCTG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414750 161 -   6597006 ATTTCAACATAAATAAATAGTAAATATTACTAAAATTTTTAAAATCCATCCACCATCACAAGTGGAAGTTAAAATATATTAGAAGTGGATATAAGCAAAAAATCTATCTAGATACATAACA-----CTATCATAGTGTATCATTTGAATTA---GAAGTTAAAACTCTG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19653231 156 -  27850971 ATTTCAATATAGG-AAATCataaatattattaaaatt------atttatCCATTGTCATTACTGG-ATTTAGAGT--ATTAGAATGGGATGTAAGCAGATAATCTATGTAGATGCATAACATTATCCTATTATGGCATATAATTTGAATTG---AAATTTAAGAGTTTG
i otoGar3.GL873538             I 7 C 0
s canFam3.chr2                  79106035 154 -  85426708 ATTTCAGCATAGGAAATCAGTAAGTATTATTAATATTTTT----CTTATCCACTCTC---AGTGGACATTACAAGATATTAGAGCTGGATACAAGCACATAATGTATAGCAATGTTTAACA-----CTCTCATAGTACATAATTTGAATTA---AAATGTAGAAATTTA
i canFam3.chr2                 I 12 C 0
e rheMac8.chr15                   517426 154 - 111343173 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1729366 830 -   2296528 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=73699.000000
s hg38.chr14_GL000009v2_random     29027 6 +    201709 CTTCTC
s panTro5.chr9                  41705002 6 + 116767853 CTTCTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050423 6 - 114479721 CTTCTC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86052 6 -    416926 CTTCTC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40822995 6 + 122973662 TTTCTC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   517580 6 - 111343173 CTTCTC
i rheMac8.chr15                I 154 C 0
s macFas5.chr13                111099375 6 - 111193037 CTTCTC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357718 6 +    434444 CTTCTC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405016 6 -    438202 CTTCTC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454776 6 +  90373283 CCTCTC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505219 6 -   1547936 CTTCTC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20747 6 +    168452 CTTCTC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384890 6 - 210400635 CTTATC
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64643599 6 -  72162052 CTTCTC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1061995 6 +   1314817 CTTCTC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414911 6 -   6597006 CTTCTC
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19653387 6 -  27850971 CTTTCC
i otoGar3.GL873538             C 0 I 326
s canFam3.chr2                  79106189 6 -  85426708 CTTTTC
i canFam3.chr2                 C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1729366 830 -   2296528 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=163499.000000
s hg38.chr14_GL000009v2_random     29033 18 +    201709 TTTCTTATTGGTGTTCAG
s panTro5.chr9                  41705008 18 + 116767853 TTTCTTATTAGTGTTCAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050429 18 - 114479721 TTTCTTATTGGTGTTCAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86058 18 -    416926 TTTCTTATTGGTGTTCAG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40823001 18 + 122973662 TTTCTGATTGGTGTTCAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   517586 18 - 111343173 TTTCTGATTGGTGTTCAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111099381 18 - 111193037 TTTCTTAGTGGTGTTCAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357724 18 +    434444 TTTCTTAGTGGTGTTCAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405022 18 -    438202 TTTCTTAGTGGTGTTCAG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454782 18 +  90373283 TTTCTGATTGGTGTTCAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505225 18 -   1547936 TTTCTTAGTGGTGTTCAG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20753 18 +    168452 TTTCTTAGTGGTGTTCAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384896 18 - 210400635 TTTCTAATTGGTGTTCAT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64643605 18 -  72162052 TTTCTGATTGGTGTTTAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1062001 18 +   1314817 TTTCTGATTAGTATTTAT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414917 18 -   6597006 TTTCCGATTGGTGTTTAT
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79106195 16 -  85426708 --TTTGATTGATGTTAAT
i canFam3.chr2                 C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19653393 326 -  27850971 I
e dasNov3.JH570393               1729366 830 -   2296528 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=316758.000000
s hg38.chr14_GL000009v2_random     29051 43 +    201709 ----TTTAGCTCTTAATAATTTAGTGTTTGCCTAGTGCTCTAGT------------TCA---------------------------------------
s panTro5.chr9                  41705026 43 + 116767853 ----TTTAGCTCTTAATAATTTAGTGTTTGCCGAGTGCTCTAGT------------TCA---------------------------------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050447 43 - 114479721 ----TTTGACTCTTAATAATTTAGTGTTTGCCTAGTGCTCTAGT------------TCA---------------------------------------
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86076 41 -    416926 ----TTTGGCTCTTAATAA-TTAGTGTTTGCCTAGT-CTCTAGT------------TAA---------------------------------------
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40823019 42 + 122973662 ----TTTGGCTCTTAATAATTTAGTGTTTGCCTAGT-CTCTAGT------------TAA---------------------------------------
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   517604 42 - 111343173 ----TTTGACTTCTAATATTTTAGCAATTGCCTACT-CTTTAGT------------TAA---------------------------------------
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111099399 42 - 111193037 ----TTTGGCTCTTAATAATTGAGTGTTTGCCTAGT-CTCTAGT------------TAC---------------------------------------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357742 46 +    434444 ----TTTGGCTCTTAATAATTTTGTGTTTGCCTAGT-CTCTAATC--------TTCTAA---------------------------------------
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405040 46 -    438202 ----TTTGGCTCTTAATAATTTTGTGTTTGCCTACT-CTCTAATC--------TTCTAA---------------------------------------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454800 46 +  90373283 ----TTTGGCTCTTAATAATTTTGTGTTTGCCTAGT-CTCTAATC--------TTCTAA---------------------------------------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505243 46 -   1547936 ----TTTGGCTCTTAATAATTTTGTGTTTGCCTAGT-CTCTAATC--------TTCTAA---------------------------------------
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20771 42 +    168452 ----TTTAGCTCTTAATAATTGAATGTTTGCCTAGT-CTCTATT------------TAA---------------------------------------
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384914 42 - 210400635 ----TTTGGCTTCTAATAATTTAGTAGTTGCCTCCT-CGTCAGG------------TAA---------------------------------------
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64643623 42 -  72162052 ----TTTGGCTCTTAATAATTTAGTGTTTGCCTAGT-CTCCAGT------------TAA---------------------------------------
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1062019 42 +   1314817 ----TTTGGCTCTTAATAATTTAGTGTTTGCCTAGT-CTCCAGT------------TAA---------------------------------------
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414935 42 -   6597006 ----TTTGGCTCTTAATAATTTAGTGTTTGCCTAGT-CCCCAGT------------TAA---------------------------------------
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19653719 41 -  27850971 ----TCTGTCCCATAATAATATAAAATTTACCCACT-CTC-AGT------------TAG---------------------------------------
i otoGar3.GL873538             I 326 C 0
s canFam3.chr2                  79106211 95 -  85426708 TGATGTTGGCTCCTAATAATTTAGT--TTGCCTATT-CTCTAGTCATTAATCTTTTTAAAAACCCTAAAATTGGATCcctggctggtgcagtggttta
i canFam3.chr2                 C 0 I 141
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1729366 830 -   2296528 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=201239.000000
s hg38.chr14_GL000009v2_random     29094 26 +    201709 TCTTCAGAAATA----------------AACATGCACTGTAG
s panTro5.chr9                  41705069 26 + 116767853 TCTTCAGAAATA----------------AACATGCACTGTAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050490 26 - 114479721 TCTTCAGAAATA----------------AACATGCACTGTAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86117 26 -    416926 TCTTCAGAAATA----------------TACACGTACTGTAG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40823061 26 + 122973662 TCTTCAGAAATA----------------TAAATGCACTGTAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   517646 26 - 111343173 TCCTCAGAAATA----------------TGAATTCACTGTAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111099441 26 - 111193037 TCTTCAGAAATA----------------TATGTGCACTGTAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357788 26 +    434444 TCTTCAGAAATA----------------TAAATGCACTGTAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405086 26 -    438202 TCTTCAGAAATA----------------TAAATGCACTGTCG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454846 26 +  90373283 TCTTCAGAAATA----------------TAAATGCACTGTAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505289 26 -   1547936 TCTGCAGAAATA----------------TAAATGCACTGTAG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20813 26 +    168452 TCTTCAGAAATA----------------TACATGCACTGTAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384956 25 - 210400635 TCTTTAGAAATA----------------TAAATTCACTGTA-
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64643665  2 -  72162052 TC----------------------------------------
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1062061 26 +   1314817 TCTTCAGAAATA----------------TAAATGCACTGTAG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6414977 26 -   6597006 TCTTCAGAAATA----------------CAAATGCACTGTAG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19653760 31 -  27850971 GCTTTAGAAACA-----------GTTCTGAAGTGCCCTGTAG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79106447 42 -  85426708 tctttaaaaaaaCAAAAACAAAAACCCTAAAATGCATTGTAG
i canFam3.chr2                 I 141 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1729366 830 -   2296528 M
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=239052.000000
s hg38.chr14_GL000009v2_random     29120 31 +    201709 GGGCTCACTCTTTCTGGTATGCTGAGGT-AAA
s panTro5.chr9                  41705095 31 + 116767853 GGGCTCACTCTTTCTAATATGCTGAGGT-AAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050516 31 - 114479721 GGGCTCACTCTTTCTAATATGCTGAGGT-AAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86143 31 -    416926 GGGCTCACTTTTTCTGGTATGCTGAGGT-AAA
i gorGor5.CYUI01015896v1       C 0 C 0
s rheMac8.chr15                   517672 32 - 111343173 GGGTTCACTATTTAGGGTATGCTGAGGTAAAA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111099467 31 - 111193037 GGGCTCACTCTTTCTGGTATGCTGAGGT-AAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357814 25 +    434444 GGGCTCA------CCGGTATGCTGAGGT-AAC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405112 25 -    438202 GGGCTCA------CCAGTATGCTGAGGT-AAC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454872 25 +  90373283 GGGCTCA------CCGGTATGCTGAGGT-AAC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505315 25 -   1547936 GGGCTCA------CCGGTATGCTGAGGT-AAC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20839 31 +    168452 GGGCTCACTCTTTCTGGTATGCTGAGGT-AAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130384981 31 - 210400635 GGGTTCACTATCTATGGTATGCTGAGGT-AAA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64643667 28 -  72162052 ---TTCACTATTTCTGGTATGCTGAGGT-AAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1062087 31 +   1314817 GGGCTCACTATTTCTGGTATGCTGAGGT-AAA
i cebCap1.NW_016107851v1       C 0 I 1046
s aotNan1.NW_018488791v1         6415003 31 -   6597006 GGGCTCACTATTTCTGGTATGCTGAGGT-AAA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19653791 31 -  27850971 TAGCTCACTATTTAAAGTATTGTAAGGT-AAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79106489 31 -  85426708 GAGCTCACTGTTTAAGATATGATGAGAT-AAA
i canFam3.chr2                 C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1729366 830 -   2296528 M
e nomLeu3.chr1a                 40823087  0 + 122973662 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=43411.000000
s hg38.chr14_GL000009v2_random     29151 6 +    201709 GTCTTT
s panTro5.chr9                  41705126 6 + 116767853 GTCTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050547 6 - 114479721 GTCTTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86174 6 -    416926 ATCTTT
i gorGor5.CYUI01015896v1       C 0 C 0
s rheMac8.chr15                   517704 6 - 111343173 ATCATT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111099498 6 - 111193037 ATCTTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357839 6 +    434444 ATCTTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405137 6 -    438202 ATCTTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454897 6 +  90373283 ATCTTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505340 6 -   1547936 ATCTTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20870 6 +    168452 ATCTTT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385012 6 - 210400635 AATCTT
i calJac3.chr1                 C 0 I 30
s saiBol1.JH378105              64643695 6 -  72162052 ATATTT
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6415034 6 -   6597006 ATATTT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19653822 6 -  27850971 ATCTTT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79106520 6 -  85426708 ATGTTT
i canFam3.chr2                 C 0 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1729366 830 -   2296528 M
e cebCap1.NW_016107851v1         1062118 1046 +   1314817 I
e nomLeu3.chr1a                 40823087 0 + 122973662 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=46044.000000
s hg38.chr14_GL000009v2_random     29157 9 +    201709 GTAAGAGAG
s panTro5.chr9                  41705132 9 + 116767853 GTAAGAGAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050553 9 - 114479721 GTAAGAGAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86180 9 -    416926 GTAAGAGAG
i gorGor5.CYUI01015896v1       C 0 C 0
s rheMac8.chr15                   517710 9 - 111343173 CCAAGACAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111099504 9 - 111193037 GTAAGAGAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357845 9 +    434444 TTAAGTGAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405143 9 -    438202 TTAAGAGAG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454903 9 +  90373283 TTAAGAGAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505346 9 -   1547936 TTAAGAGAG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20876 9 +    168452 GTAAGAGAG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64643701 9 -  72162052 TTAAAAGAG
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6415040 9 -   6597006 TTAAAAGAG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19653828 9 -  27850971 TAAAAGGAG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79106526 5 -  85426708 TTAAG----
i canFam3.chr2                 C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1729366 830 -   2296528 M
e cebCap1.NW_016107851v1         1062118 1046 +   1314817 I
e nomLeu3.chr1a                 40823087 0 + 122973662 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=847524.000000
s hg38.chr14_GL000009v2_random     29166 130 +    201709 GAAGCTTTTATAATACTACCT----------ATCATCTTTGAATTCATTTC-TGGTAGA--TTTTACACA-AATGCATTAAGTTTAGTCCAAA-CAGACA---CTG--AGAG---TTCAGCTTGCTGGTTCATGTTTCTGTCCTATGTTAAGC
s panTro5.chr9                  41705141 128 + 116767853 GAAGCTTTTATAATACTACCT----------ATCATCTTTGAATTCATTTC-TGGTAGA--TTTTACACA-AATGCATT--GTTTAGTCCAAA-CAGACA---CTG--AGAG---TTCAGCTTGCTGGTTCATGTTTCTGTCCTATGTTAAGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050562 128 - 114479721 GAAGCTTTTATAATACTACCT----------ATCATCTTTGAATTCATTTC-TGGTAGA--TTTTACACA-AATGCATT--GTTTAGTCCAAA-CAGACA---CTG--AGAG---TTCAGCTTGCTGGTTCATGTTTCTGTCCTATGTTAAGC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86189 130 -    416926 GAAG-TTTTATAATACTACCT----------ATCAGCTTTGAATTCATTTC-TGGTAGA--TTTTACACATAATGCATTAAGTTTAATCCAAA-CAAATG---CTA--AGAG---TTCAGCTTGCCGGTTCATGTTTCTGTCCTATGTTAAGC
i gorGor5.CYUI01015896v1       C 0 C 0
s rheMac8.chr15                   517719 131 - 111343173 AAAGCCTTTAGAATACTATGT----------ATCATCTGTGAACCCATTTC-TGGCAGA--TTTAATTCATAATGAATTAAGTTTACTCCAAA-CAAACA---GAA--AGAG---TTAGGCTTCCTTGGTCACTTTTTTCTCCTATATTAAGC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111099513 128 - 111193037 GAATCTTTTATAATACTACCT-------------ATCTTTGAATTCATTTC-TGGTAGA--TTTAACACATAATGAATTAAGTTCAGTCCAAA-CAAACA---CAG--AGAG---TTCAGCTTGCCAGTTCATGTTTCTCTCCTATGTTAAGC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357854 126 +    434444 GAAG-TTTTATAATACCACAT----------ATCATCTTTGAATTCATTTC-TGGTAGA--TTTAACACATAA-----TAAGTTTAGTCCAAA-CAAACA---CTG--AGAG--TTTCAGCTTGCCGATTCATGTTTTTCTCCTATGTTAAGC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405152 126 -    438202 GAAGCTTTTATAATACCACAT----------AGTTTCTTTGAATTCATTTC-TGGTAGA--TTTAACACATAA-----TAAGTTTAGTCCAAA-CAAACA---CTG--ACAG---TTCAGCTTGCCGATTCATGTTTTTCTCCTATGTTAAGC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66454912 126 +  90373283 GAAGCTTTTATAATACCACAT----------ATCATCTTTGAATTCATTTC-TGGTAGA--TTTAACACATAA-----TAAGTTTAGTCCAAA-CAAACA---CTG--ACAG---TTCAGCTTGCCGGTTCATGTTTTTCTCCTATGTTAAGG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505355 127 -   1547936 GAAGCTTTTATAATACCACAT----------ATCATCTTTGAATTCATTTC-TGGTAGA--TTTAACACATAA-----TAAGTTTAGTCCAAA-CAAACA---CTG--AGAG--TTTCAGCTTGCCGGTTCATGTTTTTCTCCTATGTTAAGC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           20885 128 +    168452 GAATCTTTTATAATACTACAT-------------ATCTTTGAATTCATTTC-TGGTAGA--TTTAACACATAATGAATTAAGTTTAGTCCAAA-CAAACA---CAG--AGAG---TTCAGCTTGCCAGTTCATGTTTCTCTCCTATGTTAAGC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64643710 130 -  72162052 GAAG-CTTCATAATACTACAT----------GTTATCTGTGAATTCATTTC-TGGTAGA--TTTAACACATGATGAATTAAGTTTAATCCAAA-CAAACA---CTG--AGAG---TTTAGCTTGCTGGTTCATGTTTCTCTCCTATGTTAAGC
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6415049 130 -   6597006 GAAG-CTTCATAATACTACAT----------CTTATCTATGAATTCATTTC-TGGTAGA--TTTAACACATGATGAATTAAGTTTAGTCCAAA-CAAACA---CTG--AGAG---TTCAGCTTGCTGGTTCATGTTTCTCTCCTATGTTAAGC
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19653837 145 -  27850971 GATGCCTCTATTATACTATATATACTAACAGATCATCTGCTAATTCATTTT-TGGTGTAATTTTAACACAAAATGAATCAAGTTTAGTCTAAA-CAAATA---ATGGTAAAG---TTAAGCTTTCTGGTTCATGTTTTTTTCCTATTTTAGGA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79106531 120 -  85426708 ------TTTGTAACATTAAAA----------ATCATCT---AATTCATTTCTTGGTGGA--TGTAACATGTAATGAATT--ATTTAGTTAAAA-AAAAAAAACCTG--AGAAAATTTAAGTGTATGGATTTGTGGTTTTCTTCTGT-------
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1730214 131 -   2296528 GAAACCTTTGTAATATTAAAA----------ATTATCTCCTAATTCAGTTT-TGGTAAT--TTTAATATATAATGAAGTAAGCTTAGTCTAAACCATACA---GTGACAGAA---TTGGGTTTGCTGCTTCATGTTTTTCTCATATTTTA---
i dasNov3.JH570393             M 830 C 0
e calJac3.chr1                 130385018  30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cebCap1.NW_016107851v1         1062118 1046 +   1314817 I
e nomLeu3.chr1a                 40823087   0 + 122973662 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1155718.000000
s hg38.chr14_GL000009v2_random     29296 138 +    201709 CAAGGCAAATTATTTTTCACTTTTTAGATACAATCCCATAATTTAAGA---------GTAGCAACACATAGATT---AAGTTTCACAGTTAAATTTTAATTA-TTTTCTAATATTTCTTTGTTTATACTTGAT----------TAAAGCTAATTTTAAAAC
s panTro5.chr9                  41705269 138 + 116767853 CAAGGCAAATTATTTTTCACTTTTTAGTTACAATCCCATAATTTAAGA---------GTAGCAACACATAGATT---AAGTTTCACAGTTAAATTTTAATTA-TTTTCTAATATTTCTTTGTTTATACTTGAT----------TAAAGCTAATTTTAAAAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050690 138 - 114479721 CAAGGCAAATTATTTTTCACTTTTTAGTTACAATCCCATAATTTAAGA---------GTAGCAACACATAGATT---AAGTTTCACAGTTAAAATTTAATTA-TTTTCTAATATTTATTTGTTTATACTTGAT----------TAAAGCTAATTTTAAAAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86319 136 -    416926 CAAGGCAAATTATTTTTCACTTTTTAGTTACAATCCCATAATTTAAGA---------GTGGCAACACATAGATT---AAGTTTCACAGTTAAATTTTAATTA-TTTTCTAATATT--TTTGTTTATACTTGAT----------TAAAGCTAATTTTAAAAC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40823087 135 + 122973662 CATGGCAAATTATTTTTCACTTTTTAGTTACAATCCCATAATTTACGA----------TAGCAACACATAGATT-----GTTTCACAGTTAAATTTTCATTA-TTTTCTAATATTTCTTTGTTTATACTTGAT----------TAAAGCTAATTTTAAAAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   517850 143 - 111343173 CAAGGCAAATTATTTTT-ATTTCTTAGTTATAATCCAGTAATTTAGAG---------GTAGTAAAACATAGATT---ATGTTTCACAGTTCAATTTTAATTA-TTTTCTATTTTTTCTTTGTTCATACTTAAT----TTAGAATAAAGTTAATTTTAAAAC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111099641 136 - 111193037 CAAGGCAAATTATTTTTCACATTTTAGTTACAATCCCATCATATAAGA---------GTAGCGACACATAGATT---AAGTAT--CAGTTAAATTTTAATTA-TTTTCTAACATTTCTTTGTTTGTACTTGAT----------TAAAGCCAATTTTAAAAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          357980 133 +    434444 CAAGGCAAATTATTTTTCACTTTTTAGTTACAATCCCATAATTTAAGA---------GTAGCAACACATAGATT---AAGTTTCACAGTTAAAT-----TTA-TTTTCGGATATTTCTTTGTTTATACTTGAT----------TAAAGCTATTTTTAAAAC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405278 133 -    438202 CAAGGCAAATTATATTTCACTTTTTAGTTACAATCCCATAATTTAAGA---------GTAGCAACACATAGATT---AAGTTTCACAGTTAAAT-----TTA-TTCTCGGATATTTCTTTGTTTATACTTGAT----------TAAAGCTAATTTTAAAAC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66455038 138 +  90373283 CAAGGCAAATTATTTTTCACTTTTTAGTTACAATCCCATAATTTAAGA---------GTAGCAACACATAGATT---AAGTTTCACAGTTAAATTTAAATTA-TTTTCTGATATTTCTTTGTCTATACTTGAT----------TAAAGCTAATTTTAAAAC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505482 138 -   1547936 CAAGGCAAATTATTTTTCACTTTTTAGTTACAATCCCATAATTTAAGA---------GTAGCAACACATAGATT---AAGTTTCACAGTTAAATTTAAATTA-TTTTCTGCTATTTCTTTGTTTATACTTGAT----------TAAAGCTAATTTTAAAAC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           21013 136 +    168452 CAAGGCAAATTATTTTTCACATTTTAGTTACAACCCCATCATATAAAA---------GTAGTGACACATAGATT---AAGTAT--CAGTTAAATTTTAATTA-TTTTCTAATATTTCTTTGTTTATACTTGAT----------TAAAGCTAAATTTAAAAC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64643840 145 -  72162052 CAAAGCAAATTATTTTTCACTTTTTAGATACAATCCCATAATTTAAGAAATTTAAGAGTAGCAACAC--AGAGA---TTGTTTCACAGTTAAATTTTAATTA-TTTTCTAATATTTCTTTGTTCACACTTGAT----------TAAAACTAATTTTAAAAC
i saiBol1.JH378105             C 0 I 310
s aotNan1.NW_018488791v1         6415179 145 -   6597006 CAAAGCAAATTATTTTTCACTTTTTAGATACAATCCCATAATTTAAGAAATTTAAGAGTAGCAACAC--AGATT---AAGTTTCACAGTTAAATTTTAATTA-TTTTCTAATATTTCTTTGTTTATACTTGAT----------TAAAGCTAATTTTAAAAC
i aotNan1.NW_018488791v1       C 0 I 295
s otoGar3.GL873538              19653982 150 -  27850971 TAAAGCAAATTATTTTT-ACTTCTTAGTTTCAATCCAGTGAACTCGAG---------GTAGCTAAACATAGATTAAGAAGTTTAACAGTTAATTTTTAATTA-TTTTCTAATTTTTCTTTGTCCATACTTGATTACTTAAGGATAAAGTTATTTTAAAAAC
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79106651 117 -  85426708 --------------CTTCACTTCTTAGTTATAATCCAGTGACTTGGGA---------GCAGCAA-----ATAAC---A------------AAATTTTAATTA-TTTTCTAATTTTCCTTTGTCCATACTTGATTACTTAAGGATAAAGTTATTTTACAAAC
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1730345 134 -   2296528 ---GGCAAATTATTTTTCACTTCTTA----CAGTTCAGTGATTTGGGA---------GTAGCTAAACATAGGTC---G--------AGTTACATTTTAATTATTTTTCTAATTTTTCTTTGTCCATACTTGATCACTTAAGGATAAAGTTATTTTTAAAAC
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018  30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cebCap1.NW_016107851v1         1062118 1046 +   1314817 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=620988.000000
s hg38.chr14_GL000009v2_random     29434 65 +    201709 ATGC-ACTCTGACAGAAAAGACAT---CTGAGAAA-----CAAAACAAGCAAATTTGTTTTCCA-TTT-TGCACCT
s panTro5.chr9                  41705407 65 + 116767853 ATGC-ACTCTGACAGAAAAGATAT---CTGAGAAA-----CAAAACAAGCAAATTTGTTTTCCA-TTT-TGCACCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050828 65 - 114479721 ATGC-ACTCTGACAGAAAAGATAT---CTGAGAAA-----CAAAACAAGCAAATTTGTTTTCCA-TTT-TGCACCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86455 65 -    416926 ATGC-ACTCTGACAGAAAAGACAT---CTGAGAAA-----CAAAACAAGCAAATTTGTTTTCCA-TTT-TGCACCT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40823222 66 + 122973662 ATGC-ACTCTGACAGAAAAGACAT---CTGAGAAA-----CCAAACAAGCAAATTAGTTTTCCACTTT-TGCACCT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   517993 66 - 111343173 ATGC-ACCCTGTCAGAAAAGACAT---CTGAGAAA-----CAAAAGAAGCAAATTAATTTTCCA-CTTTTGCACTT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111099777 68 - 111193037 ATGC-ACTCCAACAGAAAAGACAGTAACTGAGAAA-----CAAAACAAGCAAATTTGTTTTCCA-TTT-TGCACCT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          358113 66 +    434444 ATGC-ACTCTGACAGAAAAGACAT---CTGAGAAA-----CAAAACAAGCAAATTAGTTTTCCA-CTTGTGCACCT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405411 66 -    438202 ATGC-ACTCTGACAGAAAAGACAT---CTGAGAAA-----CAAAACAAGCAAATTAGTTTTCCA-CTTGTGCACCT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66455176 67 +  90373283 ATGCGACTCTGACAGAAAAGACAT---CTGAGAAA-----CAAAACAAGCAAATTAGTTTTCCA-CTTGTGCACCT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505620 66 -   1547936 ATGC-ACTCTGACAGAAAAGACAT---CTGAGAAA-----CGAAACAAGCAAATTAGTTTTCCA-CTTGTGCACCT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           21149 68 +    168452 ATGC-ACTCCAACAGAAAAGAGAGTAACTGAGAAA-----CAAAACAAGCAAATTTGTTTTCCA-TTT-TGCACCT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64644295 71 -  72162052 aTGC-ACCCTGACTGAAAAGACAT---CTGAGAAACAAAGCAAAACAAGCAAATTAGTTTTCCA-CTTTTGTGCCT
i saiBol1.JH378105             I 310 C 0
s aotNan1.NW_018488791v1         6415619 71 -   6597006 ATGC-ACCCTGACAGAAAAGACAT---CTGAGAAACAAAGCAAAACAAGCAAATTAGTTTTCCA-CTTTTGCACCT
i aotNan1.NW_018488791v1       I 295 I 14
s otoGar3.GL873538              19654132 66 -  27850971 ATAC-ACCCCGACAGAAAAGACAT---CTGAGAAA-----CAAAACAAGCAAACTAATGTTCCA-CATTTACATCT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79106768 66 -  85426708 ATAT-ATCCTGGCAGAAGAGACAT---CTGAAAGT-----CAAACCAAGCAAATTAGGATTCCA-TTTTTGCAACT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1730479 66 -   2296528 ATGC-ACCCTGACAGAAAAGACAT---CTGAAAAT-----CAAACCAAGCAAATTAATCTTCCA-CTTTTGCATCT
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cebCap1.NW_016107851v1         1062118 1046 +   1314817 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=10500.000000
s hg38.chr14_GL000009v2_random     29499 1 +    201709 G
s panTro5.chr9                  41705472 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050893 1 - 114479721 G
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86520 1 -    416926 G
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40823288 1 + 122973662 G
i nomLeu3.chr1a                C 0 I 5
s rheMac8.chr15                   518059 1 - 111343173 G
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          358179 1 +    434444 G
i macNem1.NW_012012823v1       C 0 I 13
s cerAty1.NW_012002921v1          405477 1 -    438202 G
i cerAty1.NW_012002921v1       C 0 I 13
s chlSab2.chr2                  66455243 1 +  90373283 G
i chlSab2.chr2                 C 0 I 14
s manLeu1.NW_012105442v1         1505686 1 -   1547936 G
i manLeu1.NW_012105442v1       C 0 I 13
s colAng1.NW_012121088v1           21217 1 +    168452 G
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64644366 1 -  72162052 G
i saiBol1.JH378105             C 0 I 13
s otoGar3.GL873538              19654198 1 -  27850971 G
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79106834 1 -  85426708 G
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1730545 1 -   2296528 G
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6415690 14 -   6597006 I
e cebCap1.NW_016107851v1         1062118 1046 +   1314817 I
e macFas5.chr13                111099845 0 - 111193037 C
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=-7442.000000
s hg38.chr14_GL000009v2_random     29500 9 +    201709 ACCCCCCCC-
s panTro5.chr9                  41705473 9 + 116767853 CGCCCCCCC-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050894 9 - 114479721 CACCCCCCC-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86521 3 -    416926 ------CCC-
i gorGor5.CYUI01015896v1       C 0 I 9
s rheMac8.chr15                   518060 1 - 111343173 --------C-
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111099845 3 - 111193037 ------TCC-
i macFas5.chr13                C 0 C 0
s colAng1.NW_012121088v1           21218 2 +    168452 -------CC-
i colAng1.NW_012121088v1       C 0 C 0
s otoGar3.GL873538              19654199 1 -  27850971 --------C-
i otoGar3.GL873538             C 0 I 1
s canFam3.chr2                  79106835 1 -  85426708 --------C-
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1730546 2 -   2296528 --------CA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6415690 14 -   6597006 I
e cebCap1.NW_016107851v1         1062118 1046 +   1314817 I
e saiBol1.JH378105              64644367 13 -  72162052 I
e manLeu1.NW_012105442v1         1505687 13 -   1547936 I
e chlSab2.chr2                  66455244 14 +  90373283 I
e cerAty1.NW_012002921v1          405478 13 -    438202 I
e macNem1.NW_012012823v1          358180 13 +    434444 I
e nomLeu3.chr1a                 40823289 5 + 122973662 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=39198.000000
s hg38.chr14_GL000009v2_random     29509 7 +    201709 AAAAAAG
s panTro5.chr9                  41705482 7 + 116767853 AAAAAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050903 7 - 114479721 AAAAAAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86533 7 -    416926 AAAAAAG
i gorGor5.CYUI01015896v1       I 9 C 0
s nomLeu3.chr1a                 40823294 7 + 122973662 AAAAAAG
i nomLeu3.chr1a                I 5 C 0
s rheMac8.chr15                   518061 7 - 111343173 AAAAAAA
i rheMac8.chr15                C 0 I 2
s macFas5.chr13                111099848 7 - 111193037 AAAAAAA
i macFas5.chr13                C 0 I 3
s colAng1.NW_012121088v1           21220 7 +    168452 AAAAAAA
i colAng1.NW_012121088v1       C 0 I 4
s saiBol1.JH378105              64644380 7 -  72162052 AAAAAAG
i saiBol1.JH378105             I 13 C 0
s aotNan1.NW_018488791v1         6415704 7 -   6597006 aaaaaaG
i aotNan1.NW_018488791v1       I 14 C 0
s otoGar3.GL873538              19654201 7 -  27850971 AAAAATG
i otoGar3.GL873538             I 1 C 0
s canFam3.chr2                  79106837 7 -  85426708 AAAAATG
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1730548 7 -   2296528 AAAAATA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cebCap1.NW_016107851v1         1062118 1046 +   1314817 I
e manLeu1.NW_012105442v1         1505687 13 -   1547936 I
e chlSab2.chr2                  66455244 14 +  90373283 I
e cerAty1.NW_012002921v1          405478 13 -    438202 I
e macNem1.NW_012012823v1          358180 13 +    434444 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=470282.000000
s hg38.chr14_GL000009v2_random     29516 49 +    201709 TCTCAAGAACCAGAACTGGGTAAGAACTGTGATAAAGGG---AATCTATCTA
s panTro5.chr9                  41705489 49 + 116767853 TCTCAAGAACCAGAACAGGGTAAGAATTGTGATAAAGGG---AATCTATGTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050910 49 - 114479721 TCTCAAGAACCAGAACAGGGTAAGAATTGTGATAAAGGG---AATCTATGTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86540 49 -    416926 TCTCAAGAACCAGAACTGGGTAAGAATTGTGATAAAGGG---AATCTATCTG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40823301 49 + 122973662 TCTCAAGAACCAGAACTGGGTAAGAATTGTGATAAAGGG---AATATATCTG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   518070 49 - 111343173 TCTCAAGCACCAGAACCGAGTAAGAATTGTAATAAAGAG---GATATATCTG
i rheMac8.chr15                I 2 C 0
s macFas5.chr13                111099858 49 - 111193037 TCTCAAGAACCAGAACTGGGTGAGAATTGTGATAACGGG---AATCTATCTG
i macFas5.chr13                I 3 C 0
s macNem1.NW_012012823v1          358193 49 +    434444 TCTCAGGAACCAGAACTGGGTAGGAATTGTGATAAAGGG---AATATATCTG
i macNem1.NW_012012823v1       I 13 C 0
s cerAty1.NW_012002921v1          405491 49 -    438202 TCTCAGGAACCAGAACTGGGTAGGAATTGTGATAAAGGG---AATATATCTG
i cerAty1.NW_012002921v1       I 13 C 0
s chlSab2.chr2                  66455258 49 +  90373283 TCTCAGGAACCAGAACTGGGTAGGAATTGTGATAAAGGG---AATATATCTG
i chlSab2.chr2                 I 14 C 0
s manLeu1.NW_012105442v1         1505700 49 -   1547936 TCTCAGGAACCAGAACTGGGTAGGAATTGTGATAAAGGG---AATATATCTG
i manLeu1.NW_012105442v1       I 13 C 0
s colAng1.NW_012121088v1           21231 49 +    168452 TCTCAAGAACCAGAACTGGGTGAAAATTGTGATAAAGGG---AATCTATCTG
i colAng1.NW_012121088v1       I 4 C 0
s saiBol1.JH378105              64644387 49 -  72162052 ACTCAGGCACCTGAACTGAGTAAGAATTGTGATAAAGGG---AATATATACG
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6415711 49 -   6597006 ACTCAAGCACCTGAACTGAGTAAGAATTGTGATAAAGGG---AATATATATG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19654208 49 -  27850971 TCTCAAGAATCAGAAATGAATAAGAATTGTGATAGAGAG---AATATATCTG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79106844 52 -  85426708 GCTCAAGAACCAGAAATGAATAAGGAATGTGATAGAGAGGATGATAGATCTG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1730555 49 -   2296528 TCTCAAGAACCAGAAATGAATAAGGAATGTGATAGAGAG---GATAAATCTG
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cebCap1.NW_016107851v1         1062118 1046 +   1314817 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=170294.000000
s hg38.chr14_GL000009v2_random     29565 14 +    201709 TATATTCATGACTT
s panTro5.chr9                  41705538 14 + 116767853 TATATTCATGACTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050959 14 - 114479721 TATATTCATGACTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86589 14 -    416926 TATATTCACGACTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40823350 14 + 122973662 TATATTCAGGACTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   518119 14 - 111343173 TATATTCAGGACTT
i rheMac8.chr15                C 0 I 315
s macFas5.chr13                111099907 14 - 111193037 TATATTCAGGACTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          358242 14 +    434444 TATATTCAGGACTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405540 14 -    438202 TATATTCAGGACTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66455307 14 +  90373283 TATATTCATGACTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505749 14 -   1547936 TATATTCAGGACTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           21280 14 +    168452 TATATTCAGGACTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64644436 14 -  72162052 TATATTCAGGACTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1063164 14 +   1314817 TATATTCAGGACTT
i cebCap1.NW_016107851v1       I 1046 C 0
s aotNan1.NW_018488791v1         6415760 14 -   6597006 TATATTCAGGACTT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19654257 14 -  27850971 CACATTCAAGACTT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79106896 14 -  85426708 TACACTCAGAACAT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1730604 14 -   2296528 TATATTCAGGACTT
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=40817.000000
s hg38.chr14_GL000009v2_random     29579 5 +    201709 TCTTT
s panTro5.chr9                  41705552 5 + 116767853 TATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050973 5 - 114479721 TATTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86603 5 -    416926 TCTTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40823364 5 + 122973662 CCTTT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111099921 5 - 111193037 TCTTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          358256 5 +    434444 CCTTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405554 5 -    438202 CCTTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66455321 5 +  90373283 CCTTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505763 5 -   1547936 CCTTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           21294 5 +    168452 TCTTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64644450 5 -  72162052 CCTTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1063178 5 +   1314817 CCTTT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6415774 5 -   6597006 TCTGT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19654271 4 -  27850971 -CTTT
i otoGar3.GL873538             C 0 I 61
s canFam3.chr2                  79106910 5 -  85426708 CCTTG
i canFam3.chr2                 C 0 I 60
s dasNov3.JH570393               1730618 5 -   2296528 CCTTT
i dasNov3.JH570393             C 0 I 60
e calJac3.chr1                 130385018 30 - 210400635 I
e rheMac8.chr15                   518133 315 - 111343173 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=4088951.000000
s hg38.chr14_GL000009v2_random     29584 423 +    201709 AAAATTCATTACAAACAAGTTCAAGCTGAATATTGGTAAAAGTTC-TGAAAACTCCAAAATTACTGCTTGCCCTGAGGAAGAGCTCCTACATGGTAACTCTAAAGAGGG-A-TGAACAAAAAAGGAGTGCCCTCTAGTGTGATGAATCATGTCCCTGATTGTGAGGAGAAAAATGTATCTGGAGGGTCTAGCTCTGTGGCAGTCCAGGCAGCGCCTGAACAGAGGAAGCCCATGTC---A--AATGTCTTTTTATTCCATTCACACTCCAGGTCCCTGAAATACACTTACCAGTCATCTTCTAAGCTTCATTTAAATTAAAATAAATCAGACTATAAAAATGATAACAAACCAGACACACAGCTTGTTTCTAACACAGATGATGAAAATT-------TTTGTTATGATATAGAAACTGAAAAAGTAAAGAACCCAG---TA
s panTro5.chr9                  41705557 423 + 116767853 AAAATTCATTACAAACAAGTTCAAGCTGAATATTGGTAAAAGTTC-TGAAAACTCCAAAATTACTGCTTGCCCTGAGGAAGAGCTCCTACATAGTAACTCTAAAGAAGG-A-TGAACAAAAAAGGAGTGCCCTCTAATCTGATGAATCATGTCCCTGATTGTGAGGAGAAAAATGTATCTGGAGGGTCTAGCTCTGTGGCAGTCCAGGCAGTGCCTGAACAGAGGAAGCCCATGTC---A--AATGTCTTTTTATTCCATTCACACTCCAGGTCCCTGAAATACACTTACCAGTCATCTTCTAAGCTTCATTTAAATTAAAATAAATCAGACTATAAAAATGATAACAAACCAGACACATAGCTTGTTTCTAACACAGATGATGAAAATT-------TTTGTTATGATATAGAAACTGAAAAAGTAAGGAACCCAG---TA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96050978 423 - 114479721 AAAATTCATTACAAACAAGTTCAAGCTGAATATTGGTAAAAGTTC-TGAAAACTCCAAAATTACTGCTTGCCCTGAGGAAGAGCTCCTACATAGTAACTCTAAAGAAGG-A-TGAACAAAAAAGGAGTGCCCTCTAATCTGATGAATCATGTCCCTGATTGTGAGGAGAAAAATGTATCTGGAGGGTCTAGCTCTGTGGCAGTCCAGGCAGTGCCTGAACAGAGGAAGCCCATGTC---A--AATGTCTTTTTATTCCATTCACACTCCAGGTCCCTGAAATACACTTACCAGTCATCTTCTAAGCTTCATTTAAATTAAAATAAATCAGACTATAAAAATGATAACAAACCAGACACATAGCTTGATTCTAACACAGATGATGAAAATT-------TTTGTTATGATACAGAAACTGGAAAAGTAAGGAACCCAG---TA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           86608 421 -    416926 AAAATTCATTACAAACAAGTTCAAGCTGAATATTGGTGAAAGTTT-TGAAAACTCCAGAATTACTGCTTGCCCTGAGGAAGAGCTCCTACATAGTAACTCTAAAGAGGG-A--GAACAAAAAAGGAGTGCCCTCTGATCTGATGAATCAGGTCCCTGATTGTGAGGAGGAAGATGCATCTGGAGGGTCTAACTCTGTGGCATTCCAGGCAGCGCCTGAACAGAGGAAGCCCATGTC---A--AATGTCTTTTTATTCCATTCTCACTCCAGGTCCCTGAAATACACTTACCAGTCATCTTCTAAGCTTCATTTAAATGAAAATAAATCAGACTATAAAAATGATAACAAACCAGACACATAGCTTGTTTCTAACACAGATGATGAAAATT-------TTTGTAATGATACAGAAACC-AAAAATTAAGGAACCCAG---TA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40823369 423 + 122973662 AAAATTCATTACAAATAAGTTCAAGCTGAATATTGGTGAAAGTTT-TGAAAACTCCAAAATTACTGCTTGCCCTGAGGAAGAGCTCCTACATAGTAACTCTAAAGAGGG-A-CGAACTTAAAGGGAGTGCCCTCTAATCTAATGAATCATGTCCCTGATTGTGAGGAGGAAGATGCATCAGGAGGGTCTAACTCTGTGGCATTCCAGACAGCGCCTGAACAGAGGAAGCCCATGTC---A--AATGTCTTTTCATTCTGTTCACACTCCAGGTCCCTGAAATACACTTACCAGTCATCTTCTAAGCTTCATTTAAATGAAAACAAATCAGACTATAAAAATGAAAACAAACCAGACACATAGCTTGTTTCTGACACAGATGAAGAAAATT-------TTTGTAATGGTGAAGGAACTGAAAAATTAAGGAACCCAG---CA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   518448 431 - 111343173 aaaaaTCATTACAAAAAAGTTCAA-CTGAAGATTGGTGAAAGTTT-TGAAAAATCCAAAATTACTGTTTGTCCTGAGGAAGAGCTCTTACATTGTAAACCTAAAGTGGG-A-CAAACTTAAAGGGAGTGCCCCGTAATCTCATGAATCATATCCCTGATGGTGAGGAAGCAGATGCACCTGGAGTGTCTAACTCTGTAGTATTCCAGGCATTGCCTGAATGGAACAAGCCCATCTC---ACTCAGGTCTTTTCGTTGCATTTATACTCTGGGTCCCTCAAACACACTTGCCAATCATCTTCTAAGCTTTATTCAAATGAAAATAAATCAGACTGTAAAAATTGTAACAAACCAGACATGTAGCCTGTTTCTCACAGAGATGAAGAAGAAAGAGAATTGTTGTAATGATACAGAAGTTGAAAAATTAAGGAACCCAG---TA
i rheMac8.chr15                I 315 C 0
s macFas5.chr13                111099926 422 - 111193037 AAGATTCATTACAAACAAGTTCAAGCTGAATATTGGTGAAAGTTT-TGAAAACTCCAAAAGTATTGCTTGCCCTGAGGCAGAGCTTCTACATAGTAACTCTAAAGAGGG-A-TGAACAAAAAAGGAGTGCCCTCTGATCTGATGAGTCGTGTCCATGATTGTGAGGAGGAAGATGCATCTGGAGGGTCTAACTCTGTGGCATTCCAGGCAGCACCTGAACAGAGGAGGCCCATGGC---A--AATGTC-TTTCATTCCATTCCCACTCCAGGTCCCTGAAATATACTTAGCAGTCATCTTCTAAGCTTCATTTAAATGAAAATAAATCAGACTATAAAAATGATAACAAACCAGACACATAGTTTGTTTCTAACACAGATGAAGAAAAAA-------ATTTTAATGATACAGACACCAAAAAATTAAGGAACCTAG---TA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          358261 410 +    434444 AAAATTCATTACAAACAAGTTTAAGCTGAATATTGGTGACAGTTT-TGAAAACTCCCAAATTACTGCTTGCCCTGAGGAAGAGCTCCTACATAGTAACTATAAAGAGGG-A-TGAACTTAAAGAGAGTGCCCTCTAATCTGATGAATCATGTCCCTGATTTTGAGGAGG-AGCTGCATCTGGAGGGTCTAACTCTGTAGCATTCCAGGCAGTGCCTG-ACAGAGGAAGTCCATGTC---A--AATATCTTTTCATTCCATTCACACTCCAGGTCCCTGAAATACAGTTACCAGTTATCTTCTAAGCTTCATTTAAATGAAAATAGATCAGACTA-AGAAATGATAACAAACTAGACACATAGTTTGTTTCTAACACAGATGAAGAAAATG-------TTTGTAATGAT----------AAAAATTAAGGAACCCAG---TA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405559 410 -    438202 AAAATTCATTACAAACAAGTTTAAGCTGAATATTGGTGAAAGTTT-TGAAAACTCCCAAATTACTGCTTGCCCTGAGGAAGAGCTCCTACATAGTAACTATAAAGAGGG-A-TGAACTTAAAGGGAGTGCCCTCTAATCTGATGAATCATGTCCCTGATTTTGAGGAGG-AGCTGCATCTGGAGGGTCTAACTCTGTGGCATTCCAGGCAGCGCCTGAACAGAGGAGGCCCATGAC---A--AATGTC-TTTCATTCCATTCCCACTCCAGGTCCCTGAAATACAGTTACCAGTTATCTTCTAAGCTTCATTTAAATGAAAATAGATCAGACTA-AGAAATGATAACAAACCAGACACACAGCTTGTTTCTAACACAGATGAAGAAAATT-------TTTGTAATGAT----------AAAAATTAAGGAACCCAG---TA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66455326 415 +  90373283 AAAATTAATTACAAACAAGTTTAAGCTGAATATTGGTGAAAGTTT-TGAAAACTCCCAAATTACTGCTTGCCCTGAGGAAGAGCTCCTACATAGTAACTGTAAAGAGGG-A-TGAACTTAAAGGGAGTGCCCTCTAATCTGATGAATCATGTCCCTGATTTTGAGGAGGAAGATGCATCTGGAGGGTCTAACTCTGTGGCATTCCAGGCAGCGCCTG-ACAGAGGAAGTCCATATC---A--AATATCTTTTCATTCCATTCACACTCCAGGTCCCTGAAATACAGTTACCAGTTATCTTCTAAGCTTCATTTAAATGAAAATAGATCAGACTA-AGAAATGATAACAAACCAGACACATAGCTTGTTTCTAACACAGATGAAGAAAATT-------TTTGTAATGATAAAG------AAAAATTAAGGAACCCAG---TA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1505768 410 -   1547936 AAAATTCATTACAAACAAGTTTAAGCTGAATATTGGTGAAAGTTT-TGAAAACTCCCAAATTACTGCTTGCCCTGAGGAAGAGCTCCTACATAGTAACTATAAAGAGGG-A-TGAACTTAAAGGGAGTGCCCTCTAATCTGATGAATCATGTCCCTGATTTTGAGGAGG-AGCTGCATCTGGAGGGTCTAACTCTGTAGCATTCCAGGCAGTGCCTG-ACAGAGGAAGTCCATGTC---A--AATATCTTTTCATTCCAGTCACACTCCAGGTCCCTGAAATACAGTTACCAGTTATCTTCTAAGCTTCATTTAAATGAAAATAGATCAGACTA-AGAAATGATAACAAACCAGACACATAGCTTGTTTCTAACACAGATGAAGAAAATT-------TTTGTAATGAT----------AAAAATTAAGGAACCCAG---TA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           21299 421 +    168452 AATATTCATTACAAACAAATTCAAGCTGAATATTGGTGAAAATTG-TGAAAACTCCAAAAGTATTGCTTTCGCTGAGGCAGAGCTCCTACACAGTAACTCTAAAGA-GG-A-TGAACAAAAAAGGAGTGCCCTCTAATCTGATGAATCGTGTCCATGATTGTGAGGAGGAAGATGCATCAGGAGGGTCTAACTCTGCAGCATTCCAGGCAGCGCCTGAACAGAGGAAGCCCGTGAC---A--AATGTC-TTTCATTCCATTCCCACTCCAGGTCCCTGAAATACAGTTACCAGTTATCTTCTAAGCTTCATTTAAATGAAAATAAATCAGACTATAACAATGATAACAAACCAGACACATAGCTTGTTTCTAATACAGATGAAGAAAAAT-------TTTTTAATGATACAGAAACCAAAAAATTAAGGAACCCAG---TA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64644455 424 -  72162052 AACATTCATTACAAATAGGTTCAAGCTGAATATTGGTGAAAGTTT-TGAAAACTTCAAAATTACTTCTTGTCCTAAGGAGGAGCTCCTACACTGTAACTCTAAAGAGAG-A-CAAACTTAAAGGGAGTGCCCTCTAACCTGAGGAATCATGTCTTTGATTGTGAGGAGGAAGATGCCTCTGGAGGGGCCAACTCCGTGGTGTTCCAGGCAGCGCCTGAACAGAGGAAGCCCGTGTC---C--AATGTCCTTCCATTCCGTTCACACCCCAGGTCCCTGAAATATACTTGCCACTCATCTTCTCAGCTTCATTTAAATGAAAATGAATCAGACTATGAAAATGATAACAAACCGGACACACAGCTTATTTCTAACAAAGATGAAGAAAATT-------TTTGTAATGATACAGAAACTGAAAAATTAAGGAACCTAG--TTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1063183 423 +   1314817 AAAATTCATTACAAACAGGTTCAAGCTGAATATTGGTGAAAATTT-TGAAAACTCCAAAATTACTTCTTGCCCTGAGGAAGAGCTCCTACACAGTAACTCTAAAGAGAG-A-CAAACTTTAAGGGAGCGCCCTCTAATCTGAGGAATCATGTCTTTGATTGTGAGGAGGAAGATGCCTCAGGAGGGGCTAACTCCACGGTGTTCCAGGCAGCACCTGAACAGAGGAAGCCCATGTC---A--AACGTCCTTCCATTCCATTCACACCCCAGGTCCCTGAAATACACTTGCCATTCATCTTCTCAGCTTCATTTaaatgaaaatgaatcagactatgaaaatgacaaCAAACCAGACACACAGCTTATTTCTAACAAAGATGAAGAAAATT-------CTTGTAATGATACAGAAACTGAAACATTAAGGAACCTAG---TA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6415779 417 -   6597006 AAAATTCATTACAAACAGGTTAAAGCTGAATATTGGTGAAAGTTT-TGAAAACTCCAAAATTACTTCTTGCCCTGAGGAAGAGCTCCTACACAGTAA--CTAAAGAGAG-A-CAAACTTAAAGGGAGTGCCCTCTAATCTGCTGAGTCATGTCT----TTGTGAGGAGAAAGATGCCTCTGGAGGGGCTAACTCCGTGGTGTTCCAGGCAGCGCCTAAACAGAGGAAGCCCATGTC---A--AACGTCCTTCCATTCCATTCACACTCCAGGTCCCTGAAATACACTTGCCACTCATCTTCTCAGCTTCATTTaaatgaaaatgaatcagactatgaaaatgataaCAAACCAGACACACAGCTTATTTCTAACAAAGATGAAGAAAATT-------TTTGTAACGTTACAGAAACTGAAAAATTAAGGAACCTAG---TA
i aotNan1.NW_018488791v1       C 0 I 5
s otoGar3.GL873538              19654336 412 -  27850971 GAAACTCATCACAAATGAATTAAAGCCAAAGAGTGGTGAAAATTG-CGAAAAATATAAAATTTCTGCTTCTCCTGAGGAAAAGCCACTGCA---TAAATCTAAGGGAGGCG-CAAACTTAAAGGAAATGCCCTCTAATTTGACAAATAATATACTTGATTTTGAGGGAAAAGATACT---------ACCATGTGTGTGGTGTTTCAGGCATTTCCGGAACCGAAAGAATCTAGTTTCAAA--AATGGCTTTCCATCTTCTTCATACTCTGAGTGCCTGGAATACCCCTGCCAGTCATCATCTAAGCTTTATTTAAATGAAAGTAAATTTGACAGTGGAAATATTAACAAACCAGACACTGAACATGTTTTTAACACAAGT---GAAAATT-------TTTACAGTGATACAGAAACTAAAAATGTAAGGAACCCAG---AA
i otoGar3.GL873538             I 61 I 3
s canFam3.chr2                  79106975 417 -  85426708 AAAACTCATTAGCAGAGAGTTAAAGCAGAAGTTTGGTTTAAATTTGTGAAAAATAACAAATTACTACTTATCCTGAGGAAGAGCCACTACATGCTGACTCTAAAGTAGG-AGCAGACTTAAAGGCAATACCATCTAATTTGTCAAATATTACACTTGATTGTGAGGAAAAAGATGAATTTGGAGTGTCTGTCTCTGTAGTATCTCAGGCCTTCCCTGAATAAAAAGAGTCTAGTCTCAAA--AATGTCATTCTCTCTCATTC--ACTTTGGGTCCCTGGACTGTGCTTGCCAGTCA---TCTAAGCTTTCTTTACATGAAAATAAATCAGACTTTAAAAATGATAACAAACCA---ATTGAGCATGTTTGTAACAAAAAT---AAGAGTT-------TTTATAATGATACTGAAAATAAAAAAGTAAGGAACCCAC---TA
i canFam3.chr2                 I 60 C 0
s dasNov3.JH570393               1730683 424 -   2296528 AAAACTCATCACAAATGAGTTAAAGCAGAAGTTTGGTGAAATTTG-TGAAAAATACAAAATTACTGCTTGTCCTGAGGAAGCACCACTATATGACAACTCTAACG--GA-G-CAAACTTAAAGGAAATATCCTCTAATTTGACAAATAATATACTTGATTATGAGGAAAAAGATGCACTTGGAGTGTCTCTTTCTGTTGTATTCCAGGCATTTCCTGAACAAAGAGAACCCAGTCTCGGA--AATGTCTTTTCATCTCATTTATACTCTGGGCCCCAGGGATATGTTTGCCCGTCATCTTCTAAACTTTATTTAAATGATAATAAATTAGACTATGAAAATTATTATAAACCAGACCCTGGACATATTTTTAACAAAAAT---GAGAGTT-------TTTGTAATGATGCAGAAAATAAAACTGTAAAGAATCCAGATGTA
i dasNov3.JH570393             I 60 C 0
e calJac3.chr1                 130385018  30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=2284289.000000
s hg38.chr14_GL000009v2_random     30007 252 +    201709 ATTATGATTGAAATGAAAGATGATTAAGAGTTTGACATGCAAATGGAAA-AATGTATAAACCCAAATACCACTAATTGGAAATTAGACATTAGGCATTGGTCTCAGTCTAGAGATCCAGAAAGTCTTTTTGATTTGTGGTTTACCCACCCCAAAGAAATGAAGCATATGATTCAGATAGAAAGCCACAGTATTTCTGCTGCTACAGATACTTATAAAAACAGAAAACCAACACAATGCTTATTCCAGAAGCCA
s panTro5.chr9                  41705980 252 + 116767853 ATTATGATTGAAATGAAAGGTGATTAAGAGTTTGACATGCAAATGGAAA-AATATATAAACCCAAATACCACTAATTGGAAATTAGACATTAGGCATTGGTCTCAGTCTAGAGATCCAGAAAGTCTTTTTGATTTGTGGTTTACCCACCCCAAAGAAATGAAGCATATGATTCAGGTAGAAAGCCACAGTATTTCTGCTGCTACAGATACTTATAAAAACAGAAAACCAACACAGTACTTATTCCAGAAGCCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96051401 252 - 114479721 ATTATGATTGAAATGAAAGATGATTAAGAGTTTGACATGCAAATGGCAA-AAAATATAAACCCAAATATCACTAATTGGAAATTAGACATTAGGCATTGACCTCAGTCTAGAGATCCAGAAAGTCTTTTTGATTTGTGGTTTACTCACCCCAAAGAAATGAAGCATATGATTCAGATACAAAGCCACAGGATTTCTGCTGCTACAGATACTTATAAAAACAGAAAACCAATACAGTGCTTATTCCAGAAGCCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           87029 250 -    416926 ATTATGATTGAAATGAAAGATGATTAAGAGTTTGACATGCAAATGGCAA-AAAATGTAAACCC-AATACCACTAATTGGAAATTAGACATTAGGCATTGGCCTCAGTCTAGAGATCCAGAAAGTCTTTTTGATTTGTTGTTTACCCA-CCCAAAGAAATGAAGCATATGATTCAGATAGAAAGCCACAGTATTTCTGCTGCTACAGATACTTATAAAAACAGAAAACCAATACAGTGTTTATTCCAGAAGCCA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40823792 251 + 122973662 ATTATGATTGAAATGAAAGA-GATTAAGAGTTTGACACGCAAATGGCAA-AAAATATAAACCCAAATACCACTAATTGGAAATTAGACATTAGGCATTGGCCTCAGTCTAGAGATCCTGAAAGTGTTTTTGATTTGTGGTTTACCCACCCCAAAGAAATGGAGCATATGATTCAGATAGAAAGCCACAGTAAATCTGCTGTTACAGATACTTATAAAAACAGAAAACCAATACAGTGCTTGTTCCAGAAGCCA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   518879 253 - 111343173 GTTATGATTGAAATGAAAGAAGACCAAGAGTTTGATATGCAAATGACAAGAAAATATAACCCAAAATACCACAGATTGGAAATTAGACATTAGGCATTGGCCTCAGTCTAGAAATCCAAAAAGTCTTTTTGATTTGTGGTTTGCTCACTCCAAAGAATTGAAGCATGTGATGCAGATAGAAAGCCACAGTATTTCTGCTGTTACAGACACTTACAAAAACCGAAAACCAATACAGCGCTTGTTCCACAAGCCA
i rheMac8.chr15                C 0 I 67
s macFas5.chr13                111100348 252 - 111193037 ATTATGATTGAAATGAAAGATGATTAAGAGTTTGACATGCAAATAGCAA-AAAATATAAACCCGAATATCACTCTTTGGAAATTAGACATTAGGTATTGGCCTCCGTCTAGAGATCCTGAAAGTCTTTTTGATTTGTGGTTTACCCACCCCAAAGAAATGAAGCATATGATTCAGATAGAAAGCTACAGTATTTCTGCTGCTACAGATACTTCTAAAAACAGAAAACCAATATAGTGCTTATTCCAGAAGCCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          358671 250 +    434444 ATTATGATTGAAA-GAAAGA-GATTAAGAGTTTAACATGCAAATGGCAA-AAAATAGAAAGCCAAATACCACTAATTGGAAATTAGACATTAGGCATTGGCCTCAGTCTAGAGATCTTGAAAGTCTTTTTAATTTGTGGTTTACCCACCCCAAAGAAATGAAGCATATGATTCAGATAGAAAGCCACAGTAAATCTGCTGTTACAGATACGTATAAAAACAGAAAACCAATACAGTGCTTGTTCCAGAAGCCA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          405969 241 -    438202 ATTATGATTGAAA-----------GAAGAGTTTAACATGCAAATGGCAA-AAAATAGAAAGCCAAATACCACTAATTGGAAATTAGACATTAGACATTGGCCTCAGTCTAGAGATCTTGAAAGTCTTTTTGATTTGTGGTTTACCCACCCCAAAGAAATGAAGCATATGATTCAGATAGAAAGCCACAGTAAATCTGCTGTTACAGATACATATGAAAACAGAAAGCCAATACAGTGTTTGTTCCAGAAGCCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66455741 250 +  90373283 ATTATGATTGAAA-GAAAGA-GATTAAGAGTTTAACATGCAAATGGCAA-AAAATAGAAAGCCAAATACCACTAATTGGAAATTAGACATTAGGCATTGGCCTCAGTCTAGAGATCCTGAAAGTCGTTTTGATTTGTGGTTTACCCACCCCAAAGAAATGAAGCTTATGATTCAGATAGAAAGCTACAGTATTTCTGCTGCTACAGATACTTCTAAAAACAGAAAACCAATACAGTGTTTGTTCCAGAAGCCA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1506178 250 -   1547936 ATTATGATTGAAA-GAAAGA-GATTAAGAGTTTAACATGCAAATGGCAA-AAAATAGAAAGCCAAATACCAGTAATTGGAAATTAGACATTAGGCATTGGCCTCAGTCTAGAGATCTTGAAAGTCTTTTTGATTTGTGGTTTACCCACCCCAAAGCAATGAAGCATATGATTCAGATAGAAAGCCACAGTAAATCTGCTGTTACAGATACGTATAAAAACAGAAAACCAATACAGTGCTTGTTCCAGAAGCCA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           21720 251 +    168452 ATTATGATTGAAATGAAAGATGATTAAGAGTTTGACATGCAAATAGCAA-AAAATGTAAACCTAAA-ACCACTAATTGGAAATTAGACATTAGGCAGTGGCCTCAGTCTAGAGATCCTGAAAGTCTTTTTGATTTGTCATTTACCCACCCCAAAGAAATAAAGCATATGATTCAGATAGAAAGCTACAGTATTTCTGCTGCTACAGATACTTCTAAAAACAGAAAACCAATACACTACTTATTCCAGAAGCCA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64644879 244 -  72162052 GCTATGATTAAAATGAAAGAAGATTAAGAGTTTGACATGCAAATGGTAA-TAACTATAAACCAAAATACCACTAATTGGAAATTAGACATTAGGCATTGGCCTCAGTCTCAAAATCTAAAGTGTCGTTTTGATTTGTGGTTTAC--------AAATCAGGAAGCATATGATTTACATAGAAAGCCACTGTATTTCTGCTGTTACGGACTCCTTCAAAAACAGAAAGCCAATACAGTGCTTGTTCCAGAAGCCG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1063606 244 +   1314817 GCTATGATTAAAATGAAAGATGATTAAGAGTTTGACATGCAAATGGTAA-CAACTATAAACCAAAATACCACTAATTGGAAATTAGACATTAGGCATTGGCCTCAGTCTCGAGATCCAAAATGTGTTTTGGATTTGTGGTTTAC--------AAATCAGGAAGCATATGATTTACACAAAAAGCCACTGTATTTCTGCTGTTACAGACTCCTTTAAAAACAGAAAGCCAATACAGTGCTTGTTCTAGAAGCCA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19654751 252 -  27850971 GTTGCAGATGAAATGGAAGAAGACCAAGAATTTGAAATGCAAATGACAG-AAAGTATGAACCAAAATACCACTAATTGGAAATTAGACATTGGACATATACCTCAGTATAATGATTCAAAAAGTCTTTTTGATTTCTGGCTTACCCCTTCCAAAGAAATGAAGCTTTTGAATAAAAAAAAATGGCACAGTATTTCTGTTGTAACAGATACTTCTAAGAAAACAAAGTCAATACAAGACGTGTTACAGAAGTCA
i otoGar3.GL873538             I 3 C 0
s canFam3.chr2                  79107392 248 -  85426708 GTTACATGTGAAATGAAAGAAGACCAAGAGTTTGACATGCAGATGGCCG-AAAATATGAACCAAAATACTACTATTTGTAAATTAGACACTGGGTATATCCCTCTGTATAGTGACCCAGAAAGCCTTTTTGATTTGTGGCTTGCTCACTCCAATGTGATGAAACAAATGATTCAAATGAAAAGGCATGATACTTCTGCTATTACAAACAC----AAGAAAACAAAACCAATACAAGACTTGTTCTAGAAGCCA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1731107 252 -   2296528 GTTACAGTTGAAATGAAAGAAGACCAAGAGTTTGATATGCAAATGACAA-AAAATATGAACCAAAACACCATGAATTGGAAATTAGACACTGGACATATATCTCAGTCTAGTGATCCCAAAAACCTTTATGATTTGTGGCTTACCCGTTCCAATGAAATGAAACATATGATTCAAACAAAAAAGCGCACTATTTCGTCTGTTACAAACACTTTTGAGAAAACAAAGCCAATGGAATACTTGTTCCAGAAGCCA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018  30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6416196   5 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=29346.000000
s hg38.chr14_GL000009v2_random     30259 5 +    201709 CTGAA
s panTro5.chr9                  41706232 5 + 116767853 CTGTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96051653 5 - 114479721 CTATA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           87279 5 -    416926 CTATA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824043 5 + 122973662 CTATA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111100600 5 - 111193037 CCATA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          358921 5 +    434444 CTATA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          406210 5 -    438202 CTATA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66455991 5 +  90373283 CTATA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1506428 5 -   1547936 CTATA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           21971 5 +    168452 CCATA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64645123 5 -  72162052 TTATT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1063850 5 +   1314817 TTATT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19655003 5 -  27850971 TTATA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79107640 5 -  85426708 TTATA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1731359 5 -   2296528 TCACA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e rheMac8.chr15                   519132 67 - 111343173 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6416196 5 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=804758.000000
s hg38.chr14_GL000009v2_random     30264 91 +    201709 TGACAATCCCAGTGTTAATAACTACAAAACCATGAATCTTGAATTATAAAATCTGGGTTATTCTTTGCCACATAGTGAGAGAACATCAAAA-
s panTro5.chr9                  41706237 90 + 116767853 TGACAATCCCAGTGTTAATAACTACAAAAGCACGAATCTTGAATTATAAAATGCGGGTTATTCTTTGCCACATAGTGAGAGAACATC-AAA-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96051658 90 - 114479721 TGACAGTCCAAGTGCTAATAACTACAAAAGCATGAATCTTGAATTATAAAATGTGGCTTATTCTTTGCCACATAGTAAGAGAACATC-AAA-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           87284 88 -    416926 TGACAATCCCAGTGCTAA-AACTACAGAAGCATGAATCTTGAATTATAAAATGTGG-TTATTCTTTGCCACATAGTGAGAGAACATC-AAA-
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824048 90 + 122973662 TGGCAATCCCAGTGGTGATAACTACCAAAGCATGAATCTTGAATTATAAAATGTGAGTTATTCTCTACCACATAGTAAGAGGACATA-AAA-
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   519199 90 - 111343173 TGACAGTCCCACTGCTAATATCTATAAAAGCATGAAACCCGAATTAGAAAATGTGAGTTATTCTCCACCACATAGTGACAGAACATC-AAA-
i rheMac8.chr15                I 67 I 43
s macFas5.chr13                111100605 90 - 111193037 TGACAATCCCAGTGCTAACAACTACAAAAGCAGGAATCTTGAATTATCAAATGTGAGTTATTCTCTGCCACATAGTGAAAAAACATC-AAA-
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          358926 90 +    434444 TGACAATCCCAGTGCTAATAACTACAAAAGCGTGAATCTTGAATTATAAAATGTGAGTTATTCTCTACCACATAGTGAGAGAACATA-AAA-
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          406215 90 -    438202 TGACAATCCCAGTGCTAGTAACTACAAAAGCATGAATCTTAAATTATAAAATGTGAGTTATTCTCTACCACATAGTGAGAGAACATA-AAA-
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66455996 90 +  90373283 TGACAATCCCAGTGCTGATAACTACAAAAGCATGAATCTTGAATTATAAAATGTGAGTTATTCTCTACCACATAGTGAGAGAACATA-AAA-
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1506433 90 -   1547936 TGACAATCCCAGTGCTAATAACTACAAAAGCGTGAATCTTGAATTATAAAATGTGAGTTATTCTCTACCACATAGTGAGAGAACATA-AAA-
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           21976 90 +    168452 TGACAATCCCAGTGCTAATAACTACAAAAGCAGGAATCTTGAAGTATAAAATGTGAGTTATTCTCTGCCACATAGTGAAAAAACATC-AAA-
i colAng1.NW_012121088v1       C 0 I 1
s saiBol1.JH378105              64645128 90 -  72162052 TGACAATCCCAGTGCTAGCAACTACAAAAGCAGGAATCTGGAATTAGAAAATGTGAGTTATTCTCTGCCTCATAGTGAGAGAACATC-ACA-
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1063855 90 +   1314817 TGACAATCCCAGTGCTAGCAACTACAAAAGCATGAATCTTGAATTAGAAAATGTGAGTTATTCTCTGCCACATAGTGACAGAACATC-AAA-
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19655008 90 -  27850971 TGATAATTGCAGTGCTAATCAGTGTGAAAGCATGAAACCTGAATTAGAAAATGTGAGTTCTTCCCCTCCACATAGCTACAGAACATC-AAA-
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79107645 80 -  85426708 ------TGCAGGCTATAA-AACTATAAAAGTATGGAACCTGAATTAGAAAACATGAG---TTCTTTACCTCATAGTTTCAGAACATC-AGA-
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1731364 91 -   2296528 TGATAATTGCTGTGCTAATGACTATAAAAGCATGGAACCTGAATTAGAAAATGTGAGTTCTTCTCCACCATATTGTGACAGAGCATC-AAAA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6416196  5 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=161276.000000
s hg38.chr14_GL000009v2_random     30355 120 +    201709 AATATAGCT---A---GAA-ACTTACAGC-AAGATATTTCAAGGTca-----ctaacataacacatgtgtacatacgtaacaaacctgcacattgtgcacatgtaccagaacttaaagtataataatagt--aaa
s panTro5.chr9                  41706327 121 + 116767853 AATATAGCT---A---GAAGACTTACAGC-AAGATATTCCAagggca-----ctaacatagcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccagaacttaaagtataataatagt--aaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96051748 122 - 114479721 AATATAGCT---A---GAAGACTTACAGC-AAGATATTCCAAGGTca-----ccaacatagcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccagaacttaaagtataataatact-aaaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           87372 119 -    416926 AATATAGCT---A---GAAGACTTA---G-AAGATATTCCAAGGTca-----ccaacatggcacatg-atacatatgtaacaaacctgcatgttgtgcacatgtaccagaacttaaagtataataataataaaaa
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824138  40 + 122973662 AGTATAGCT---A---GAAGACTTACAGC-AAGATATTCCAAGGCT-----------------------------------------------------------------------------------T-----
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111100695  40 - 111193037 AATATAGCT---A---GGAGACTTACAGC-AAGATATTCCAAGGTTT----------------------------------------------------------------------------------------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          359016  40 +    434444 AGTATAGCT---A---GAAGACTTACAGC-AAGATATTCCAAGGTTT----------------------------------------------------------------------------------------
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          406305  40 -    438202 AGTATAGCT---A---GAAAACTTACAGC-AAGATATTCCAAGGTTT----------------------------------------------------------------------------------------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66456086  39 +  90373283 AGTATAGCT---A---GAAGACTTACAGC--AGATATTCCAAGGTTT----------------------------------------------------------------------------------------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1506523  41 -   1547936 AGTATAGCT---A---GAAGACGTACAGCAAAGATATTCCAAGGTTT----------------------------------------------------------------------------------------
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           22067  44 +    168452 -ATATAGCT---A---GGAGACTTACAGC-AAGATATTCCAAGGTTTAACAA-----------------------------------------------------------------------------------
i colAng1.NW_012121088v1       I 1 C 0
s saiBol1.JH378105              64645218  40 -  72162052 AGTATAACT---A---GAAGACTTCCAGC-AAGATATTCCAAGGTTT----------------------------------------------------------------------------------------
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1063945  40 +   1314817 AGTATAACT---A---GAAGACTTCCAGC-AAGATATTCCAAGGTTT----------------------------------------------------------------------------------------
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19655098  43 -  27850971 AATAGATCTAAAA---GAAGAATTGCAGC-AAGATATGCAAAGGTTT----------------------------------------------------------------------------------------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79107725  43 -  85426708 AGTATATCTAAAA---GAAGAATGACAGC-AAGATATGCAAAGCTTT----------------------------------------------------------------------------------------
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1731455  42 -   2296528 -GTATATCT---AAATGAAGAATTACAGC-AAGATATGCAAAGGTTT----------------------------------------------------------------------------------------
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018  30 - 210400635 I
e rheMac8.chr15                   519289  43 - 111343173 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6416196   5 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=3221811.000000
s hg38.chr14_GL000009v2_random     30475 374 +    201709 aaGAATGAGGTAGGCATGTTACAAGTAGAGTTCCTGGCTTTGGAGAAAGAGAAAGTCCAACTTCAAAAAGA--CAGAGGTTCACTTGCTGCT--TCTT------T----TTTCTCTTTATCAATTATTTGATTTAGTCAAATTTTCTATTCAAGA--AAATCCCATGTGTACAGTTACAGCGGGGTTTTCTAAATGTGTAATTATGTGTCAAAGTAGACTAGTCCTGCTATC---TAAACAAT---GG---TTC-GGAGAATGTTCTCATAATGTTTGTTCATTAATCAACCTAAGTCTCACTCTCAGTCTTCCAAGTGGCATATGAGCTGGGAAACTAATTCAGCCATATACCATGTGACCTTCTGAACCAGATCAA-CAT-AAAG-A-A-ATTGCTAAAGAAA
s panTro5.chr9                  41706448 375 + 116767853 aaGAATGAGGTAGGCATGTTACAAGTAGAGTTCCTGGCTTTGGAGAAAGAGAAAGTCCAACTTCAAAAAGA--CAGAGGTTCACTTGCTGCT--TCTT------T----TTTCTCTTTATCAATTATTTGATTTAGTCAAATTTTCTATTCAAGA--AAATCTCATGTGTACAGTTACAGCGGGGTTTTCTAAATGTGTAATTATGTGTCAAAGTAGATTAGTCCTGCTATC---TAAACAAC---GG---TTCTGGAGAATGTTCTCATAATGTTTCTTCATTAATCAACCTAAGTCTCACTCTCAGTCTTCCAAGTGGCATATGAGCTGGGAAACTTATTCAGCCATATACCATGTGACCTTATGAACCAGATCAA-CAT-AAAG-A-A-ATTGCTAAAGAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96051870 375 - 114479721 aagaaTTAGGTAGGCATGTTACAAGTAGAGTTCCTGGATTTGGAGAAAAAGAAAGTCCAACTTCAAAAAGG--CAGAGGTTCACTTGCTGCT--TCTT------T----TTTCTCTTTATCAATTATTTGATTTAGTCAAATTTTCCATTCAAGA--AAATCTCATGTGTACAGTTACAGTGGGGTTTTCTAAATGTGTAATTATGTGTCAAAGTAGATTAGTCCTGTTATC---TAAACAAT---GG---TTCTGGAGAATGTTCTCATAATGTTTGTTCATTAATCAACCTAAGTCTCACTCTCAGTCTTCCAAGTGGCATACGAGCTGGGAAACTAATTCAGCCATACACCTTGTGATGTTCTGAACCAGATCAA-CAT-AAAG-A-A-ATTGCTAAAGAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           87491 373 -    416926 aaGAATGAGGTAGGCATGTTACAAGTTGAGTTCCTGGCTTTGGAGAAAA--GAAGTCCAACTTCAAAAAGA--CAGAGGTTCACTTGCTGCT--TCTT------T----TTCCTCTTTATCAATTATTTGATTTAGTCAAATTTTCTATTCAAGA--AAATCTCATGTGTACAGTTACAGTGGGGTTATCTAAATGTGTAATTATGTGTCAAAGTAGATTAGTTCTGCTATC---TAAATAAT---GG---TTCTGGAGAATGTTCTCATAATGTTTGTTCATTAATCAACCTAAGTCTCACTATCAGTCTTCCAAGTGGCGTATGAGCTGGGAAACTAATTCAGCCATATACCATGTGACCTTCTGAACCAGATCAA-CAT-AAAG-A-A-ATTGCTAAAGAAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824178 377 + 122973662 AAGAATGAGGTAGGCATGTTACAAGTAGAGTTCCTGGCTTTGGAGAAAGAGACAGTTCAACTTCAAAAAGA--CAGAGGTTCACTTACTGCTTCTCTT------T----TTTCTGTTTATCAATTATTTGATTCAGTCTAATTTTCTATTCAAGA--AAATCTCATGTGTACAGTTACAGTGGGGTTTTCTAAATGTGTAATTATGTGTCAAAGTAGATGAGTTCTTCTATC---TAAATAAC---AG---TTCTGGAGAATGTTCTCATAATATTTGTTCATTAATCAACCTAAGTCTCACTCTCAGTCTTCCAAGTGGCATATGGGCTGGGAAACTAATTCAGCCATATACCATGTGACCTTCTGAACCAGATCAA-CTT-AAAG-A-A-ATCGCTAAAGAAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   519332 365 - 111343173 AAGAATGAGGTGGGCTTGTTACAAGTAGAGGTCCTGGCTTTGAAGAAA---AAAGTTCAACTATAAAAAGA--AAGAGGTTCCCTTGCTGCTTCTCTT-----------------ATTATAAGTTATCTGATTCATTCTGGTTTTCTACTCAAGA--AAATCTCATGTGTATGGTTACAGTGGGGTTATCTAAATGTGTAATTACGTGTCAAAGTAGATTAGTGCTGCTATC---TAAATGAC---AG---TTCTGGAAAACATTCTCATAATCTTTGATCATTCATCAACCTAAGTCTCACTATGAGTCTTCCAAGTGGCATATGGGCTGGGAAAATTATTTAGCGATATACCATGTGA---TCTGAACCAGATAAG-CAT-AAGGAA-A-ATTGCTAAAGAAA
i rheMac8.chr15                I 43 C 0
s macFas5.chr13                111100735 377 - 111193037 AAGAATGAGATGGGCATGTTACAAGCAGAATTCCTGGCTTTGGAGAAAGAGAAACTCCAACTTCAAAAAGA--CAGAGGTTTACTTGCTGCTTCTCTT------T----TTTCTCTTTATCAATTATTTGATGTAGTCAAATTTTCTATTCAAGA--AAATCTCATGCGTACAGTTACAGCGGGGTTATCTAAATGTGTAATTATGTGTCAAAGTAGATTAGTTCTGCTATC---TAAATAAC---GC---TTCTGGAGAATGTTCTCATAATGTTTGTTCATTAATCAACCTAAGTCTCACTCTCAGTCTTCCAAGTGGCGTATGGGCTGGGAAACTAATTCAGCCGTATACCAAGAGACCTTCTGAACCAGAGAAA-CAT-AAAG-A-A-ATTGCTAAAGAAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          359056 374 +    434444 AAGAATGAGGTAGGCATGTTACAAGTTGAGTTCCTGGCTTTGGAGAAAGAGACAGTTCAACTTCGGAAATA--CAGAGGTTCACTTGCTGCTTCCCTT------T----TTTCTCTTTATCAATTATTTGATTCAGTCTAATTTTCTATTCAAGA--AAATCTCATGTGTACAGTTACAG-GGGGTTATCTAAATGTGTAATTATGTGTCAAAGTAGATTAGTTCTCCTATC---TAAATAAT---GG---TTCTGGAGATTGTTCTCATCATGTTTGTTCATTAATCAACCTAAGTCTCATCGTCAGTCTCCCAAGTGGCATATGGGCTGGGAAACTAATTCAGCCGTGTACCATGTGACCTTTTGAACCAGATAA---AT-AAAG-A-A-ATTGCTGAAGAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          406345 372 -    438202 AAGAATGAGGTAGGCATGTTACAAGTTGAGTTCCTGGCTTTGGAGAAAGAGACAATTCAACTTCAGAAATA--CAGAAGTTCACTTGCTGCTTCCCTT------T----TTTCTCTTTATCAATCATTTGATTCAGTCTAATTTTCTATTCAAGA--AAATCTC--GTGTACAGTTACAG-GGGGTTATCTAAATGTGTAATTATGTGTCAAAGTAGATTAGTTCTGCTATC---TAAATAAT---GG---TTCTGGAGAATGTTCTCGTAATGTTTGTTCGTTAATCAACCTAAGTCTCACTATCAGTCTTCCAAGTGGCATATGGGCTGGGAAACTAATTCAGCCATGAACCATGTGACCTTCTGAACCAGATAA---AT-AAAG-A-A-CTTGCTGAAGAAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66456125 373 +  90373283 AAGAATGAGGTAGGCATGTTACAAGTTGAGTTCCTGGCTTTGGAGAA--AGACAGTTCAGCTTCAAAAATA--CAGAGGTTCACTTGCTGCTTCTCTT------T----TTTCTCTTTATCAATTATTTGATTCAGTCTAATTTTCTATTCAAGA--AAATCTCATGCGTACAGTTACAGTGGGGTTATCTAAATATGTAATTATGTGTCAAAGTAGATTAGTTCTGCTATC---TAAATAAT---GG---TTCTGGAGAATGTTCTCATAATGTTTGTTCATTAATCAACCTAAGTCTCACTATCAGTCTTCCAAGTGGCATATGGGCTGGGAAACTAATTCAGCCATGTACCATGTGACCTTCTGAACCAGATAA---AT-AAAG-A-A-AGTGCTGAAGAAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1506564 373 -   1547936 AAGAATGAGGTAGGCATGTTACAAGTTGAGTTCCTGACTTTGGAGAAAGAGACAGTTCAACTTCAGAAATA--CAGAAGTTCACTTGCTGCTTCTGTT------T----TTTCTCTTTATCAATTATTTGATGTAGTCAAATTTTCTATTCAAGA--AAATCTCATGTGTACAGTTATG--GGGGTTATCTAAATGTGTAATTATGTGTCAAAGTAGATTAGTTCTGCTATC---TAAATAAT---GG---TTCTGGAGAATGTTCTCGTAATGTTTGTTCATTAATCAACCTAAGTCTCACTATCAGTCTTCCAAGTGGCATATGGGCTGGGAAACTAATTCAGCCATGTACCATGTGACCTTCTGAACCAGATAA---AG-AAAG-A-A-ATTGCTGAAGAAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           22111 372 +    168452 -----TGAGGTAGGCATGTCACAAGTAGAGTTCCTGGCTTTGGAGAAAGAGAAAGTCCAACTTCAAAAACA--CAGAGGTTCACTTGCTGCTTCTCTT------T----TTTCTCTTTATCAATTACTTGATTCAGTCTAATTTTCTATTCAAGA--AAATCTCATGTGTACAGTTACAGTGGGGTCATCTAAATGTGTAATTATGTGTCAAAGTAGATGAGTTCTGCTATC---TAAATAAC---GG---TTCTGGAGAATGTTCTCATAATGTTTGTTCATTAATCAACCTAGGTCTCATTATCAGTCTCCCAAGTGGCATATGGGCTGGGAAACTAATTCAGCCATATACCAAGTGACCTTCTGAATCAGATAAA-CAT-AAAG-A-A-ATTGCTAAAGAAA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64645258 375 -  72162052 AAGAATGAGGTGGGCATGTTACAGGTAGAGTTCCTGGCTTTGGAGAAAGAGGAAGTTCAATTCCAAAAAGA--CAG--GTTCACTTGCTGCTTCTCTT-----------TTTCTCTTTATCATTTATCTGATTCAGTCTAATTTTCTACTCAAGA--AAATCTAATGTGTACAGTGACAGTGGGGTCATCTAAATGTATAATTATGTGTCAAAGTAGAGTCGAACTGCTGTC---TAAATGAT---GG---TTCTGGAAAATGTTCTCATAATCTTTGTTCATTAATCAACCTAAGTCTCATTATCCATCTTCCAAGTGGCATATGGGCTGGGAAACTAATTCAGCCATATACCATGTGACTTTCTGAATTAGATAAG-CATGAAAA-A-A-ATCACTAAAGGAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1063985 375 +   1314817 AAGAATGAGGTGGGCATGCTACAAGTAGAGTTCCTGGCTTTGGAGAAAGAGAAAGTTCAATTTCAAAAAGA--CAG--GTTCTCTTGCTGCTTCTCTT-----------TTTCTCTTTATTGTTTATCTGATTCAGCCTAATTTTCTACTCAAGA--AAATCTAATGTGTACAGTTACAGTGAGGTCATCTAAATGTATGATTTTGTGTCAAAGTAGAGTAGAACTGCTATC---TAAATGAC---AG---TTCTGGAAAATGTTCTCATAATCTTTGTTCATTAATCAACCTAAATCTCACTATCTGTCTTCCAAGTGGCATATGGGCTGGGAAACTAATTCAGCCATATACCATGTGACCTTCTGAATTAGATAAG-CATGAAAG-A-A-ATTACTAAAGGAA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19655141 376 -  27850971 AAGAATGAGATAGGCATGTTAAAAGTAGAGTTCCTGGCTTTGGAGAAAGAAAAATTTCAACTTCAAAAAGAGGTAGAGGTTTACTTGCTGCTACTCTT---TGTT----TTTCTTTGTATCCCTTTTCTGACTAAGTCTGATTTTTTACTTATGA--AAAACTCTTGTGTAGAAT------GAGGTTATATAAATACATAATTGTATATAGAAGTAGATTATTTCTGCAGTCTGATAGTAAGT---AG---TTCAGGAAAATATTCTTGGAATATTTGTTCCATAATCAACCCACGTATCTCAATCAGTCTTCTAACTGTCCTGTGAGCTGAGAAAAT-----AGCCATATGCTATATGGCCTTCAGAACTAGGTTAAGCAT-AAAG-GTA-ATTGCTAAAAGAG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79107768 337 -  85426708 AAGAATGAGAAAAGCATGTTACAAGTAGAACTCCTG---------------AAAGTTCAACTTCCAAAAGA---------------GCTGCTGCTCTTTTGTTTT----TTCCTCTTTATCAATTATCTGAGCCAATTTGATTTTCCACTTATGAAGAAAGCTCATGTATAAAAT-------GGGTTGTCTCAATATATAATTGTGTTTGGAAATAGATTATTTCTGCTATC---TAAATGAT---AGGAATGCAAGAAAAT---------ATATTTGTTTTC-------CTTAAGTTTC--TTTCAGTTTCCCAAGTGGTGTATGAACTGGGAAGCTGATTTAGCTATGCACCCTGTGACTTCATGAACCAAAATAACCAT-AGAG-A-ATATTGCTGTAAAAA
i canFam3.chr2                 C 0 I 225
s dasNov3.JH570393               1731497 366 -   2296528 AAGAATGAGATAGGCATGTTACAAGTAGAGTTCCGGGCTTTGGAAAAAGAGAAAGCTCAACTTCAAAAAGAGGTAGAGGTTCACTTACTGCTATTCTT------TATTGTTTCTCCTTATCATTTATCTGATCCATTCTGATTTTCCACTTAGGA--AAAGCGCA-GTGTAAAAT------GGGGTTGTTTAAATACGTAATTGTGTCTAGAAAGAGATGATTTCTGCAGTC---TAGATAATTGGAG---TTCTGGAAAAGATTCTCATAATTTGTGTCC-TTAGTTAACCT--------------GTCTTCCAAGTGGCATATGAACTGGGAAACTAATTTACTTAGATACCATGTGTCTTTCTGAACCAGGATAAGCATTAAGG-A-A-GTTGCGGAAAAGA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018  30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6416196   5 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=74259.000000
s hg38.chr14_GL000009v2_random     30849 22 +    201709 ------TAAGCTTTAGATTCTAGATT--CT
s panTro5.chr9                  41706823 22 + 116767853 ------TAAGCTTTAGATTCTAGATT--CT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96052245 22 - 114479721 ------TAAGCTTCAGATTCTAGATT--CT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           87864 21 -    416926 -------AAGCTCTAGATTCTAGATT--CT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824555 22 + 122973662 ------CAAGCTCTAGATTCTAGATT--CT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   519697 15 - 111343173 ------TAATGTCTAGATT---------CT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111101112 22 - 111193037 ------TAAGCTCTAGATTCTAGATT--CT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          359430 23 +    434444 ------CAAGGTCTAGATTCTAGATTA-TT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          406717 23 -    438202 ------CAAGGTCTAGATTCTAGATTA-TT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66456498 23 +  90373283 ------CAAGGTCTAGATTCTAGATTA-TT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1506937 24 -   1547936 ------CAAGGTCTAGATTCTAGATTATTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           22483 22 +    168452 ------TAAGCTCTAGATTCTAGATT--AT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64645633 15 -  72162052 ------TAAGCTCTAGATT---------CT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1064360 15 +   1314817 ------TAAGCTCTAGATT---------CT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19655517 22 -  27850971 ------AAGGCAATGAGCTATAGGGT--TT
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1731863 22 -   2296528 AAATAATAAGCTTTTAAGCGTT--------
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6416196  5 -   6597006 I
e canFam3.chr2                  79108105 225 -  85426708 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=359657.000000
s hg38.chr14_GL000009v2_random     30871 47 +    201709 TTTTACT--ATAGTCATTTAGAGATGAATTACATTTATTT-AATGATAGA
s panTro5.chr9                  41706845 47 + 116767853 TTTTTCT--GTATTCATTTAGAGATGAATTACATTTATTT-AATGATAGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96052267 46 - 114479721 TTTTT-T--GTATTCATTTAGAGATGAATTACATTTATTT-AATGATAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           87885 46 -    416926 TTTTC-T--GTATTCATTTAGAGATGAATTACATTTATTT-AATGATAGA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824577 47 + 122973662 TTTTTCT--GTATTCATTTAGAGATGAATTACATTTATTT-AATGATAGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   519712 48 - 111343173 TTTTTCT--ATATTCATTTAAAGATGAATTACATTTATTTAAATGATAAA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111101134 47 - 111193037 TTTTTCT--GTATTCATTTAGAGATGAGTTACATTTATTT-ATTAATAGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          359453 46 +    434444 TTTTTCT--GTATTCATTTAGAGATGAATTACA-TTATTT-AATGATAGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          406740 46 -    438202 TTTTTCT--GTATTCATTTAGAGATGAATTACA-TTATTT-AATGATAGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66456521 47 +  90373283 TTTTTCT--GTATTCATTTAGAGATGAACTACGTTTATTT-ATTAATAGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1506961 46 -   1547936 TTTTTCT--GTGTTCATTTAGAGATGAATTACA-TTATTT-AATGATAGA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           22505 47 +    168452 TTTTTCT--GTATTCATTTAGAGATGAATTACATTTATTT-ATTCATAGA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64645648 48 -  72162052 TTTTTCT--GTATTCATTTAGAAATGAATTGCATTTATTTAAATGATAGG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1064375 48 +   1314817 TTTTTCT--GTACTCATTTAGAAATGAATTACATTTATTTAAACGATAGG
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19655539 50 -  27850971 TTCTCCTCCCCATTTACTTAAAGATGAATTTCATTTATTTAAACAATAAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79108330 40 -  85426708 TTTTTAT--CTATTGACTTAAATATAAATTGCATTTCCAT-AA-------
i canFam3.chr2                 I 225 C 0
s dasNov3.JH570393               1731885 39 -   2296528 ATTTTTT--CTATTGGCTTAAAGATAAATTACATTTCCTT-A--------
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6416196  5 -   6597006 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=1818394.000000
s hg38.chr14_GL000009v2_random     30918 185 +    201709 ATGGGAATACAATGGGAGGGAAGCAATGACTGAGATGAGCCA--CAAAAACACTTCTAGCCTTGAGAGTTGCAATGAATATTCCC-AGACAAATGAGTCTGTTTAATGTGTTTTCATGCATGCAAGTTTATCTG----CTTAGCTCAAACTGTTTGAATTTATAGTTCCATCATGGTTA-TTT-CCAATA-TTTT
s panTro5.chr9                  41706892 185 + 116767853 ATGGGAATACAATGGGAGGGAAGCAATGACTGAGATGAGCCA--CAAATACACGTCTAGCCTTGAGAGTTGCAATGAATATTCCC-AGCCAAATGAGTCTGTTTAATGTGTTTTCATGCATGCAAGTTTATCTG----CTTAGCTCAAACTGTTTGAATTTATAGTTCCATCATGGTTA-TTT-CCAATA-TTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96052313 185 - 114479721 ATGGGGATACAATGGGAGGGAAGCAATGACTGAGATGAGCCA--CAAAAACATGTCTAGCCTTGAGGGTTGCAATGAATATTCCC-AGCCAAATGAGTCTGTTTAATGTGTTTTCATGCATATAAGTTTATCTG----CTTAGCTCAAACTATTTGAATTTATAGTTCCATCATGGTTA-TTT-CCAATA-CTTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           87931 184 -    416926 ATGGGAATACAATGGGAGGGAAGCAATGACTGAGAC-AGCCA--CAAAAACACGTCTAGCCTTGAGAGTTGCAACGAATATTCCC-AGCCAAATGAGTCTGTTTAATGTGTTTTCATGCATGCAAGTTTATCTG----CTTAGCTCAAACTGTTTGAACTTACAGTCCCATCATGGTTA-TTT-CCAATA-TTTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824624 186 + 122973662 ATGAGAATACAATGGGTAGGAAGCAATGACTGAGAAGAGCCA--CAAAAACACATCTAACCTTGAGAGTTGCAATGAATATTCCC-AGCCAAAGGGGTCTGTTTAATGTGTTTTCATGCATGCAAGTTTATCTG----CTTAGCTCAAACTGTTTGAATTTACAGTCCCATCATGGTTA-TTT-CAAATATTTTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   519760 186 - 111343173 ATGGTAATACAATAGGAGGGAAGCAGTGACTGAGAAGAGACA--TGAAAATGTAGCTGACCTTGAGAGTTGCAGCAAATATTACC-AGCCAAAGAAGTCTGTTTAATGTGCTTTTATGCATGCAGGTTTATCTG----TTTGACTCAAACTGTTTAAACTTATAATTCCATCATGGCCA-CTT-TAAATATTTTT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111101181 186 - 111193037 ATGGGAATACAATGGGAGGGAAGCAATGACTGAGATGAGCCA--CAAAAACACATCTCGCCTTGAGAGTTGCAATGAATATTCCC-AGCCAAATGAGTCTGTTTAATGTGTTTTCATGCATGCAAGTTTATCTG----CTTAGCTCAAACTGTTTGAACTTATAGTCCCATCATGGTTA-TTT-CAAATACTTTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          359499 186 +    434444 ATGAGAATACAATGGGAGGGAAGCAATGACTGAGAAGAGCCA--CAAAAACACATCTAGCCTTGAGAGTTACAACGACTATTCCC-AGCCAAAGGAGTCTGTTTAATGTGTTTTCATGCGTGCAAGTTTATCTG----CTTAGCTCAAACTGTTTGAACTTACAGTCCCATCATGGTTA-TTT-CAAATATTTTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          406786 186 -    438202 ATGAAAATACAATGGGAGGGAAGCAATAACTGAGAAGAGCCA--CAAAAACACATCTAGCCTTGAGAGTTGCAACGAATATTCCC-AGCCAAAGGAGTCTGTTTAATGTGTTTTCATGCATGCAAGTTCATCTG----CTTAGCTCAAACTGTTTGAACTTAGAGTCCCATCATGGTTA-TTT-CAAATATTTTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66456568 186 +  90373283 ATGGGAATACAATGGGAGGGAAGCAATGACCGAGAAGAGCCA--CAAAAACACATCCAGCCTTGAGAGTTGCAACGAATATTCCC-AGCCAAAGGAGTCTGTTTAATGTGTTTTCATGCATGCAAGTTTATCTG----CTTAGCTCAAACTGTTTGAACTTAGAGTCCCATCATGGTTA-TTT-CAAATATTTTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507007 186 -   1547936 ATGAGAATACAATGGGAGGGAAGCAATGACTGAGAAGAGCCA--CAAAAACACATCTAGCCTTGAGAGTTGCAACGAATATTCCC-AGCCAAAGGAGTCTGTTTAATGTGTTTTCATGCATGCAAGTTTATCTG----CTTAGCTCAAACTGTTTGAACTTACAGTCCCATCATGGTTA-TTT-CAAATATTTTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           22552 186 +    168452 ATGGGAATATAATGGGAGGGAAGCAATGACTGAGATGAGCCA--CAAAAACACATCCAGCCTTGAGAGTTGCAATGAATATTCCC-AGCCAAAAGAGTCTGTTTAATGTGTTTTCATGCATGCAAGTTTATCTG----CTTAGCTCAAACTCTTTGAACTTTTAGTCTCATCATGGTTA-TTT-CAAATACTTTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64645696 190 -  72162052 ATGGGAATACAATGGGAGGGAAGCAATGACTGAGAAGAGCCG--CAAAAACACATCCAGCCTTGAGAGTTGCAATGAATACTCCC-AGGCAGAGGATTCTGTTAAATGTGTTTCCATGCATGCAAGTTTATCTGCTTACTTAACTCAAACTGTTTGAACTGATAGGTCCATCATGGCCG-TTT-CAAATATTTTG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1064423 190 +   1314817 ATGGAAATACAATGGGACAGAACCAATGACTGAGAAGAGCCG--CAAAAACACATCCAGCCTTGAGAGTTGCAATGAATACTCCG-AGCCAGAGGATTCTGTTGAATGTGTTTCCACGCATGCAAGTTTATCTGCTTACTTAACTCAAACTGCTTGAACTGATAGTTCCATCATGGCCA-TTT-CAAATATTTTT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6416201 191 -   6597006 ATGGGAATACAATGGGAGGGAAGCAATGATTGAGAAGAGCCT--CAAAAACACATCTAGCCTGGAGAGTTGCAATGAATATTCCCAAGCCAGAGGATTCTGTTGAATGTGTTTCCATGCATGCAAGTTTATCTGCTTACTTAACTCAAACTGTTTGAACTGATAGTTCCATCATGGCCA-TTT-CAAATATTTTG
i aotNan1.NW_018488791v1       I 5 C 0
s otoGar3.GL873538              19655589 185 -  27850971 GTGGGAATACAATAGGAAGGAAGTGGTGACTAAGAAGAGATA--TAAAACTGTATCTAGCTTTGAGGTTTGCAAGAAATATTCCC-AGCTAAAGGAATCTGTATATTGTGCTTTTATGTGTGCAGGTTTATCTG----TTTATCTCAAACTGCTGGAACTTATAACTCTACCATGACC--TCT-TAGATATTTTT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79108370 156 -  85426708 ---ACAATACAATGGAAAAGAAGCAATAACTAAGAGAAGGGA--TATAAACA------------------------AATATTTC--AGCTAAACCAGTCTATTTAT--TGCTTCAGTATGTGCAATCCTCTCTG----CTTTCCTCAAATCCTTTGAACGTAGAATTCCAACATGACTACTTT-GAGATATTTT-
i canFam3.chr2                 C 0 I 520
s dasNov3.JH570393               1731924 180 -   2296528 --GACAATGGAATGACAAGGAAGCAATGACTGAGAGAAGTGATCTAAAAATATATCTAACCTTGAGTGCTATAACAAATATTCC--AGCTAAATTTATCTATTTATTGTGCATT-----GTGCAAGTTTATCTG----CATAATTCTATCCCTTGGAATTTATAACTCCAACATAACCA-CTTGGAGATATTTT-
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018  30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=50665.000000
s hg38.chr14_GL000009v2_random     31103 5 +    201709 -GAAAA
s panTro5.chr9                  41707077 5 + 116767853 -GAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96052498 5 - 114479721 -GAAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88115 5 -    416926 -GAAAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824810 5 + 122973662 -GAAAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   519946 5 - 111343173 -GGAAA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111101367 5 - 111193037 -GAAAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          359685 5 +    434444 -GAAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          406972 5 -    438202 -GAAAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66456754 5 +  90373283 -GAAAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507193 5 -   1547936 -GAAAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           22738 5 +    168452 -GAAAA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64645886 5 -  72162052 -GAAAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1064613 5 +   1314817 -GAAAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6416392 5 -   6597006 -GAAAA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19655774 5 -  27850971 -GACAA
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1732104 6 -   2296528 TCATAA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79108526 520 -  85426708 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=254985.000000
s hg38.chr14_GL000009v2_random     31108 26 +    201709 CAAAT--ATATA--CTTCCACATATTTAAA
s panTro5.chr9                  41707082 26 + 116767853 CAAAT--ATATA--CTTCCACATATTTTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96052503 26 - 114479721 CAAAT--ATATA--TTTCCACATATTTAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88120 26 -    416926 CAAAT--ATATA--CTTCCACATATTTTAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824815 26 + 122973662 CAAAT--ACATA--CTTCCACATATTTTAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   519951 28 - 111343173 CAAATACATACA--CTTCCACATATTTAGA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111101372 26 - 111193037 CAGAT--ATATA--CTTCCACATATTTTAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          359690 26 +    434444 CAAAT--ATATA--CTTCCACATACTTTAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          406977 26 -    438202 CAAAT--ATATA--TTTCCACATACTTTAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66456759 26 +  90373283 CAAAT--ATATA--TTTCCACATACTTTAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507198 26 -   1547936 CAAAT--ATATA--TTTCCACATACTTTAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           22743 26 +    168452 CAGAT--ATATA--CTTCCACATATTTTAA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64645891 26 -  72162052 CAAAT--ATATA--CTTCCACATATTTTTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1064618 26 +   1314817 CAAAT--ATACA--CTTCCACATATTTTAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6416397 26 -   6597006 CAAAT--ATATA--CTTCCACATATTTTTA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19655779 25 -  27850971 CAAATACATACA--CTTCCAC---TTTTAA
i otoGar3.GL873538             C 0 I 340
s canFam3.chr2                  79109046 21 -  85426708 cATAT--ATATA--TGTTTA-----TTTAA
i canFam3.chr2                 I 520 C 0
s dasNov3.JH570393               1732110 28 -   2296528 CAAAT--ATATACGCTTCCACATtttttta
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=33695.000000
s hg38.chr14_GL000009v2_random     31134 5 +    201709 AAAAT
s panTro5.chr9                  41707108 5 + 116767853 AAAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96052529 5 - 114479721 AAAAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88146 5 -    416926 AAAAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824841 5 + 122973662 AAAAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   519979 5 - 111343173 AAAAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111101398 5 - 111193037 AAAAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          359716 5 +    434444 AACAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          407003 5 -    438202 AACAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66456785 5 +  90373283 AACAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507224 5 -   1547936 AACAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           22769 5 +    168452 AAAAT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64645917 5 -  72162052 AAACT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1064644 5 +   1314817 AAACT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6416423 5 -   6597006 AAACT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19656144 5 -  27850971 GTAAT
i otoGar3.GL873538             I 340 C 0
s canFam3.chr2                  79109067 1 -  85426708 ----T
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1732138 5 -   2296528 aaggt
i dasNov3.JH570393             C 0 I 366
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=51567.000000
s hg38.chr14_GL000009v2_random     31139 5 +    201709 CACCA
s panTro5.chr9                  41707113 5 + 116767853 CACCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96052534 5 - 114479721 CACCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88151 5 -    416926 CACCA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824846 5 + 122973662 TACCA
i nomLeu3.chr1a                C 0 I 2
s rheMac8.chr15                   519984 5 - 111343173 CACCA
i rheMac8.chr15                C 0 I 2
s macFas5.chr13                111101403 5 - 111193037 CACCA
i macFas5.chr13                C 0 I 2
s macNem1.NW_012012823v1          359721 5 +    434444 TACCA
i macNem1.NW_012012823v1       C 0 I 2
s cerAty1.NW_012002921v1          407008 5 -    438202 TACCA
i cerAty1.NW_012002921v1       C 0 I 2
s chlSab2.chr2                  66456790 5 +  90373283 TACCA
i chlSab2.chr2                 C 0 I 2
s manLeu1.NW_012105442v1         1507229 5 -   1547936 TACCA
i manLeu1.NW_012105442v1       C 0 I 2
s colAng1.NW_012121088v1           22774 5 +    168452 CACCA
i colAng1.NW_012121088v1       C 0 I 2
s saiBol1.JH378105              64645922 5 -  72162052 CACCA
i saiBol1.JH378105             C 0 I 3
s cebCap1.NW_016107851v1         1064649 5 +   1314817 CACCA
i cebCap1.NW_016107851v1       C 0 I 3
s aotNan1.NW_018488791v1         6416428 5 -   6597006 CATCA
i aotNan1.NW_018488791v1       C 0 I 3
s otoGar3.GL873538              19656149 5 -  27850971 CATTA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79109068 5 -  85426708 CACCA
i canFam3.chr2                 C 0 I 2
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1732143 366 -   2296528 I
e ponAbe2.chr9                  90356545 41598 + 135191526 I

a score=28198.000000
s hg38.chr14_GL000009v2_random     31144 2 +    201709 CT
s panTro5.chr9                  41707118 2 + 116767853 CT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96052539 2 - 114479721 CT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88156 2 -    416926 CT
i gorGor5.CYUI01015896v1       C 0 C 0
s ponAbe2.chr21_random           2917167 2 +   4212913 CT
i ponAbe2.chr21_random         n 41598 I 1333
s nomLeu3.chr1a                 40824853 2 + 122973662 CT
i nomLeu3.chr1a                I 2 C 0
s rheMac8.chr15                   519991 2 - 111343173 CT
i rheMac8.chr15                I 2 C 0
s macFas5.chr13                111101410 2 - 111193037 TT
i macFas5.chr13                I 2 C 0
s macNem1.NW_012012823v1          359728 2 +    434444 CT
i macNem1.NW_012012823v1       I 2 C 0
s cerAty1.NW_012002921v1          407015 2 -    438202 CT
i cerAty1.NW_012002921v1       I 2 C 0
s chlSab2.chr2                  66456797 2 +  90373283 CT
i chlSab2.chr2                 I 2 C 0
s manLeu1.NW_012105442v1         1507236 2 -   1547936 CT
i manLeu1.NW_012105442v1       I 2 C 0
s colAng1.NW_012121088v1           22781 2 +    168452 TT
i colAng1.NW_012121088v1       I 2 C 0
s saiBol1.JH378105              64645930 2 -  72162052 CT
i saiBol1.JH378105             I 3 C 0
s cebCap1.NW_016107851v1         1064657 2 +   1314817 CT
i cebCap1.NW_016107851v1       I 3 C 0
s aotNan1.NW_018488791v1         6416436 2 -   6597006 CT
i aotNan1.NW_018488791v1       I 3 C 0
s otoGar3.GL873538              19656154 2 -  27850971 CT
i otoGar3.GL873538             C 0 I 2
s canFam3.chr2                  79109075 2 -  85426708 CT
i canFam3.chr2                 I 2 C 0
s dasNov3.JH570393               1732509 2 -   2296528 CT
i dasNov3.JH570393             I 366 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I

a score=346066.000000
s hg38.chr14_GL000009v2_random     31146 36 +    201709 C-CAATATTTCTGTTGAATC--AGACC-TTACATTATGTT
s panTro5.chr9                  41707120 36 + 116767853 C-CAATATTTCTGTTGAATC--AGACC-TTACATTATGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96052541 36 - 114479721 C-CAATATTTCTGTTGAATC--AGACC-TTACATTATGTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88158 37 -    416926 CTCAATATTTCTGTTGAATC--AGACC-TTACATTATGTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824855 37 + 122973662 C-CAATATTTCTGTTGAATC--AGACCTTTATATTATGTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   519993 39 - 111343173 C-CAATGTTTCTGTTGAGTCAGAGACTTTTACGTGATGTT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111101412 31 - 111193037 C-CAATTTTTCTGCTGAATC--AGACC------TTATGTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          359730 37 +    434444 C-TAATATTTCTGTTGAATC--AGACCTTTATATTATGTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          407017 37 -    438202 C-TAATATTTCTGTTGAATC--AGACCTTTATATTATGTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66456799 37 +  90373283 C-TAATATTTCTGTTGAATC--AGACCTTTATATTATGTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507238 37 -   1547936 C-TAATATTGCTGTTGAATC--AGACCTTTATATTATGTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           22783 31 +    168452 C-CAATTTTTCTGCTGAATC--AGACC------TTATGTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64645932 37 -  72162052 C-CAATATTTCTATTGAATC--AGACCTTTACATGATGTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1064659 37 +   1314817 C-CAATATTTCTGTTGAATC--AGACCTTTACATGATGTT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6416438 37 -   6597006 C-CAATATTTCTGTTGAATC--AGACCTTTCCATTATGTT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19656158 35 -  27850971 C-AAATGTTGCTGTTGAATA--AGATC--TTCTTTATGTT
i otoGar3.GL873538             I 2 I 3
s canFam3.chr2                  79109077 37 -  85426708 C-AGGTATTTCTGTTGAGTC--AAACCTTTACATTATGTT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1732511 37 -   2296528 C-AAATGTTTCTGTTGAGTC--AAACTGGTACATTAAGTT
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385018 30 - 210400635 I
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=1141113.000000
s hg38.chr14_GL000009v2_random     31182 105 +    201709 GTTT-----------------------------------AATAAAGTATGGTAAG--TTTTGGCATGTATG-A-TTTTTATCATGTAAGAAGCATAATTTCTTAGCTAAAAA-TTTAACCTTTGACTCTTTAGTAGAAAGTTGAG
s panTro5.chr9                  41707156 105 + 116767853 GTTT-----------------------------------AATAAAGTATGGTAAG--TTTTGGCATGTATG-A-TTTTTATCATGTAAGAAGCATAATTTCTTAGCTAAAAA-TTTAACCTTTGACTCTTTAGTAGAAAGCTGAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96052577 105 - 114479721 GTTT-----------------------------------AATAAAGTATGGTAAG--TTTTGGCATGTATG-A-TTTTTATCATGTAAGAAGCGTAATTTCTTAGCTAAAAA-TTTAGCCTTTGACTCTTTAGTAGAAAGTTGAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88195 105 -    416926 GTTT-----------------------------------AATAAAGTATGGTAAG--TTTTGGCATGTATG-A-TTTTTATCATGTAAGAAGCATAATTTCTTAGCCAAAAA-TTTAGCCTTTGACTCTTTAGTAGAAAGTTGAG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824892 106 + 122973662 GTTT-----------------------------------AATAAAGTATGGTAAG--TTTTGACATGTATG-ATTTTTTATCATATAAGAAGCATAACTTCTCAGCCAAAAA-TTTAGCATTTGACTCTTTAGTGGAAAGTTGAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520032 139 - 111343173 GTTTaataaaatatggtagataaaaataaaatagaataaaataaaataTGGTAGG--TTTTGACATGTATG-A-TTTT-ATCATATAAGTAGCATAACTTCTCAGCCAAAAA-TTTAGCATTTGGCTCTAGAGTAGAAAGCTGAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111101443 105 - 111193037 GTTT-----------------------------------AATAAAGTATAGTAAG--TTTTGGCATGTATG-A-TTTTGATCATATAAGAAGCATCATTTATCAGCCAAAAA-TTTAACCTTTGACTCTTTAGGAGGAAGTTGAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          359767 105 +    434444 GTTT-----------------------------------AATAAAATATGGTAAG--TTTTGACATGTATG-A-TTTTTATCATATAAGAAGCATAACTTCTCAACCCAAAA-TTTAGCATTTGACTCTTTAGTAGAAAGTTGAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          407054 105 -    438202 GTTT-----------------------------------AATAAAATATGGTAAG--TTTTGACATGTATG-A-TTTTTATCATATAAGAAGCATAACTTCTCAACCCAAAA-TTTAGCATTTGCCTCTTTAGTAGAAAGTTGAG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66456836 105 +  90373283 GTTT-----------------------------------AATAAAATATGGTAAG--TTTTGACATATATG-A-TTTTTATCATATAAGAAGCATAACTTCTCAACCAAAAA-TTTAGCATTTGACTCTTTAGTAGAAAGTTGAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507275 105 -   1547936 GTTT-----------------------------------AATAAAATATGGTAAG--TTTTGACATGTATG-A-TTTTTATCATATAAGAAGCATAACTTCTCAACCCAAAA-TTTAGCATTTGCCTCTTTAGTAGAAAGTTGAG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           22814 105 +    168452 GTTT-----------------------------------AATAAAGTATAGTAAG--TTTTGGCATGTATG-A-TTTTTATCATATAAGAAGCATAATTTATCAGCCAAAAA-TTTAACCTTTGACTCTTTAGTAGGAAGTTGAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385048 106 - 210400635 GTTT-----------------------------------AATAAAATACGGTAAA--TTTTGACATGTATGTG-ATTTGATCATGTAAGTCGCATAACTCCTCAGCCAAAAA-TTTAGCATTTGATTTTATACTAGAAAGCTGAG
i calJac3.chr1                 I 30 C 0
s saiBol1.JH378105              64645969 104 -  72162052 GTTT-----------------------------------AATAAAGTATGGCAAG--TTTAGACACG-ATG-A-ATTTTATCATATAAGAAACATAACTTCTCAGCCAAAAA-TTTAGCATTTGACTCTTCAGTAAAGAGTTAAG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1064696 105 +   1314817 GTTT-----------------------------------AATAAAGTATGGTAAG--CTTAGACATGTATG-A-TTTTTATCATATAAGAAACATAACTTCTCAGCCAAAAA-TTTAGCATTTGACTCTTTAGTGAAGAGTTAAG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6416475 105 -   6597006 GTTT-----------------------------------AATAAAGTATGGTAAG--TTTAGACATGTATG-A-TTTTTATCATATAAGAAACATAACTTCTCAGCCAAAAA-TTTAGCATTTGACTCTTTAGCAAAAAGTTAAG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19656196 105 -  27850971 ATTT-----------------------------------AATGAAGGAAGGTAGA--TTTTGGCATGCATG-A-TTTTACTC-CATAAGTAGCATAAATTCTTAGGCAAAAATTTTAAGTTTTGACTCCAAAATAGAAAGCTGCA
i otoGar3.GL873538             I 3 C 0
s canFam3.chr2                  79109114 101 -  85426708 ---T-----------------------------------AATAAAGTATGGTATA--TTTTGGCATATATG-A-TTTTTATCATGTAGGTAGCATAGATTTACAGC-AAACC-TTCAGTATTTGACTCTAATGGAGACAACTGAC
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1732548 102 -   2296528 GTTT-----------------------------------AGTAAAGTCTGGTAGAGTTTTTGACACGTATG-A-TTTTTATCATATAGGTACCATAAACCTCTAGCATAAAA-TATAGTACTTAA-----AAATAGAAAGTTGAA
i dasNov3.JH570393             C 0 I 436
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=550404.000000
s hg38.chr14_GL000009v2_random     31287 57 +    201709 TTCTGTACACTGTGTTCTAAAGATAGACA---------------------------AAAATCTAGAGATTTT-CTTCTTTCAAAG
s panTro5.chr9                  41707261 56 + 116767853 TTCTGTACATTGTGTTCTAAAGATAGAC----------------------------AAAATCTAGAGATTTT-CTTCTTTCAAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96052682 57 - 114479721 TTCTGTACATTGTGTTCTAAAGATAGACA---------------------------AAAATCTAGAGATTTT-CTTCTTTCAAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88300 57 -    416926 TTCTGTACATTGTGTTCTAAAGATAGACA---------------------------AAAATCTAGAGATTTT-CTTCTTTCAAAG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40824998 57 + 122973662 TTCTGTACATTGTGTTCTAAAGATAGACA---------------------------AAAATCTAGAGATTTA-CTTCTTTCAAAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520171 57 - 111343173 TTCTGTATATTGTGTTCTAAAGATAGACA---------------------------AAAATCTAGAGATTTT-CTTCTTTCAAAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111101548 45 - 111193037 TTCTGTACATTGTGTTCTAAAGA---------------------------------------TAGAGATTTT-CTTCTTTCAAAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          359872 57 +    434444 TTCTGTAGATTGTGTTCTAAAGATGGACA---------------------------ACAATCTGGAGTTTTA-CTTCTTTCAAAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          407159 57 -    438202 TTCTGTAGATTGTGTTCTAAAGATGGACA---------------------------ACAATCTGGAGTTTTA-CTTCTTTCAAAG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66456941 57 +  90373283 TTCTGTAGATTGTGTTCTAAAGATGGACA---------------------------ACAATCTGGAGATTTA-CTTCTTTCAAAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507380 57 -   1547936 TTCTGTAGATTGTGTTCTAAAGATGGACA---------------------------ACAATCTGGAGTTTTA-CTTCTTTCAAAG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           22919 45 +    168452 TTCTGTACATTGTGTTCTAAAGA---------------------------------------TAGAGATTTT-CTTTTTTCAAAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385154 85 - 210400635 TTCTGTATATTATGTTCTAAAGGTAGAGATTTTACATCTTTCAGTATATTATGTTCTAAAGGTAGAGATTTTACATCTTTCAAAG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64646073 56 -  72162052 TTCTACGCATTGTGTTCT-AAGATAGACA---------------------------AAAATCTAGGGATTTT-CTTCTTTCAAAG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1064801 57 +   1314817 TTCTATACATTATGTTCTAAAGATAGACA---------------------------AAAATCTAGGGATTTT-CTTCTTTCAAAG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6416580 57 -   6597006 TTCTATACATTGTGTTCTAAAGATAGACA---------------------------AAAATCTAGGGATTTT-CTTCTTTCAAAG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19656301 57 -  27850971 GTCAATATATTGAGTTTTAAAGATAGACA---------------------------AAAATCTAGGGATATT-CTTCTTCAAAAG
i otoGar3.GL873538             C 0 I 332
s canFam3.chr2                  79109215 48 -  85426708 TTTAGAGG---------TAAAAATAAACA---------------------------AAAATCTAGAGATATC-CTCCTTTAAAAT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1733086 56 -   2296528 ttctcTGCATTGAGTTTT-AAGCTAGACA---------------------------AAAATCTAGATTTATT-CTCCTTTAAAAG
i dasNov3.JH570393             I 436 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=2979451.000000
s hg38.chr14_GL000009v2_random     31344 315 +    201709 TAAAAGCAGATGAGGC-CTTTTTCCACCCT-C---TGAGG-------TGTTAAATTGCTTTGCTC--GTTAGACTTTTAATATATCTGACTAATTTGAT--AAATTTATCTGGTAATTTATGTAAT-------------TCAGCAACATGGAATTGTATAATGTTATTTGGTGCC--ATGAAATGCTAGGGAATGCCGCCTCAAGAGCTCTGGATGAAACATTTCGTATGTCTTGGTTGGTTTGACTCCCATTTTC-AGTAGATAATATGGCTTAAGTAGATAA----CTGTACCATATGTGTTCCACCTATAAACATTTGTGGTAACTGAATGTGAAATCTGGGAAGCAT
s panTro5.chr9                  41707317 317 + 116767853 TAAAAGCAGATGAGGC-CTTTTTCCACCCT-C---TGAGG-------TGTTAAATTGCTTTGCTCAAGTTAGACTTTTAACATATCTGCCTAATTTGAT--AAATTTATCTGGTAATTTATGTAAT-------------TCAGCAATATGGAATTGTATCATGTTATTTGGTGCC--ATGAAATGCTAGGGAATGCCACCTCAAGAGCTCTGGATGAAACATTTCATATGTCTTGGTTGGTTTGACTCCCATTTTC-AGTAGATAATGGGGCTAAAGTAGATAA----CTGTACCGTATGTTTTCCACCTATAAACGTTTGTGGTAATTGAATGTGAAGTCCGGGAAGCAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96052739 317 - 114479721 TAAAAGCAGATGAGGC-CTTTTTCCACCCT-C---TGAGG-------TGTTAAATTGCTCTGCTCAAGTTAGACTTTTAATATATCTTACTAATTTGAT--AAATTTATCTGGTAATTTATGTCAT-------------TCAGCAATATGGAATTGTATCATGTTATTTGGTGCC--ATGAAATGCTAGAGAATGCCACCTCAAGAGCTCTGGATGAAACATTTCATATGTCTTGGTTGGTTTGACTCCCATTTTC-AATAGATAATGGGGCTAAAGTAGATAA----CTGTGCCATATGTTTTCCACCTATAAACGTTTGTGGTAATTGAATGTGAAATCTGCGAAGCAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88357 317 -    416926 TAAAAGCAGATGAGGC-CTTTTTCCACCCT-C---TGAGG-------CATTAAATTGCTTTGCTCAAGTTAGACTTTTAATATATCTGACTAATTTGAT--AAATTTATCTGGTAATTTATGTAAT-------------TCAGCAATATGGAATTGTATCATGTTATATGGTGCC--ATGAAATGCTAGTGAATGCTACCTCAAGAGCTCTGGATGAAACATTTAATATGTCTTGGTTGGTTTGACTCCCATTATC-AGTAGATAATGGGGTTAAAGTAGGTAA----CTGTACCATATGTTTTCCACCTATAAACTTTTGTGGTAATTGAATGTGAAATCTGGGAAGCAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40825055 309 + 122973662 T-AAAGCAGATGAGGC-CTTTTTCCACCCT-C---TGAGG-------CATTAAATTGCTTTGCTTAAGTTAGACTTTTAATATATCTGACTAATTTGAT--AAATTTATCTGGTAATTTATGTAAT-------------TCAGCAATACAGAATTGTATCATGTTATTTGGTGCC--ATGAAATGCTAGGGAATGCCACCTTAGGAGCTTTGGATGAAACATTTAATATGTCTTGGTTGGTTTGACACCCA--------TAGATAATGGGGCTAAAGTAGATAA----CTGTACCATATGTTTTCCACCTATAAACTTTTGTGGTAATTGAATGTGAAATCTGGGGAGCAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520228 312 - 111343173 TAAAAGCAGATGAGGC-CTCCCACCACCCT-C---TGAGC-------CATTAAATTGATTTGCCAAAGTCACACTTTTAATTTATTTGATGAATTTGAT--GTATTTATATGATAATTTATGTAAT-------------TCAGCAATATGTAATTGTATCTTCCCTTTTGGTGCC--ATGAAATGCTAGGTAATGCCACCTTAGGAGCTTTGGGTGAGTTACTTACTATTTCTTGG-----TTTACTTCCCTTATCAAGTAGGTAATGGGGCTAGAGTGGACAA----CTATACTGTATATCTTCCAGCTATAAACTTTTGTGGTAATTGAATGT-AAATTTGAGGAACAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111101593 311 - 111193037 TAAAAGCACATGAGG--CTTTTTGCACCCT-C---TGAGG-------CATTAAATTGCTTTGCTCAAGTTAGACTTTTAATATATCTGACTAATTTGAT--AAATTGATCT-----TTTATGTAAT-------------TCAGCAATATAGAGTTGTATCATGTTATTTGGTGCC--ATGAAATGCTAGTGAATGCCACCTTAGGAGATGTGGATGAAACATTTAATAGGTCTTGGTTGGTTTGACTCCCATTATC-AGTAGATAATGGGGCTAAAGTTGGTAA----CTGGAACATATACATTCCACCTATCACCTTTTGTGGTAATTGAATGTGAAATCTGGGAAGCAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          359929 312 +    434444 T-AATGCAGATGAGGC-CTTTTTCCACCCT-C---TGGGG-------CATTAAATTGCTTTGCTTCAGTTAGACTTTTAATATAT----CTAATTTGAT--AAATTTATCTGGTAATTTATGTAAT-------------TCAGGAATATGAAATTGTATCATATTATTTGGTGCC--ATGAAATGCTAGTGAATGCCACCTTAGGAGATGTGGATGAAACATTTAATAGGTCTTGGTTGGTTTGACTCCCATTATC-AGTAGATAATGGGGCTAAAGTAGGTAA----CTGTACCATATGTTTTCCACCTATAAACTTTTGTGGTAATTGAATGTGAAATCTGGGAAGCGT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          407216 312 -    438202 T-AAAGCAGATGAGGC-CTTTTTCCACCCT-C---TGAGG-------CATTAAATTGCTTTGCTTCAGTTAGACTTTTAATATAT----CTAATTTGAT--AAATTTATCTGGTAATTTAAGTAAT-------------TCAGGAATATGAAATTGTATCATATTATTTGGTGCC--ATGAAATGCTAGGGAATGCCACCTTAGGAGCTTTGGATGAAACACTGAATATGTCTTGATTGGTTTGACTCCCATTAGC-AGTAGATAATGGGGCTAAAGTAGGTAA----CTGTACCATATGTTTTCCACCTATAAACTTTTGTGGTAATTGAATGTGAAATCTGGGAAGCAT
i cerAty1.NW_012002921v1       C 0 M 1272
s chlSab2.chr2                  66456998 312 +  90373283 T-TAAGCAGATGAGGC-CTTTTTCCACCCT-C---TGAGG-------CATTAAATTGCTTTGCTTCAGTTAGACTTTTAATATAT----CTAATTTGAT--AAATTTATCTGGTAATTTATGTAAT-------------TCAGGAATATGGAATTGTATCATATTATTTGGTGCC--ATGAAATGCTAGGGAATGCCACCTTAGGAGCTTTGGATGAAACATTGAATATGTCTTGACTGGTTTGACTCCCGTTAGC-AGTAGATAATGGGGCTAAAGTAGGTAA----CTGTACCATATGTTTTCCACCTATAAACTTTTGTGGTAATTGAATGTGAAATCTGGGAAGCAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507437 312 -   1547936 T-AAAGCAGATGAGGC-CTTTTTCCACCCT-C---TGGGG-------CATTAAATTGCTTTGCTTCAGTTAGACTTTTAATATAT----CTAATTTGAT--AAATTTATCTGGTAATTTATGTAAT-------------TCAGGAATATGAAATTGTATCATATTATTTGGTGCC--ATGAAATGCTAGGGAATGCCACCTTAGGAGCTTTGTATGAAACACTGAATATGTCTTGATTGGTTTGACTCCCATTAGC-AGTAGATAATGGGGCTAAAGTAGGTAA----CTGTACCATATGTTTTCCACCTATAAACTTTTGTGGTAATTGAATGTGAAATCTGGGAAGCAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           22964 311 +    168452 TAAAAGCACATGAGG--CTTTTTGCACCCA-C---TGAGG-------CATTCAATTGCTTTGCTCAAGTTAGACTTTTAATATGTCTGACTAATTTGAT--AAATCTATCT-----TTTATGTAAT-------------TCAGCAATATGGAATTGTATCATGTTATTTGGTGCC--ATGAAATGCTAGTGAATGCCACCTTAAGAGATGTGGATGAAACATTTAATATGTCTTGGTTGGTTTGACTCCCATTATC-AGCAGATAATGAGGCTAAAGTGGGTAA----CTGTACCATATGTATTCCACCTATCAACTTTAGTGGTAATTGAATGTGAAATCTGGGAAGCAT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385239 298 - 210400635 TAAAAGCA-ATTTAACCCTCCCACTACACT-C---TGAGG-------CATCAAATTGCTTTGCCAAAGTCATGCTTTTAATTTATCTGACTAATTGGAT--ATATTTATCTAGTAATTTACATAAT-------------TTAG---------ATTGTATCTTTTCTTTTGGTGCC--ATGAAATACTAGGTAATGCCACCTTAGGAGCTTTGGGTGAATTATTTAGTATTTC----TTGGTTTTACTTCCATTATGAAGTAGATAATGGGGCTAGAGTAGACAA----CTGTACTGCATATCTGTCCGTTGTAAACTTCTGTGGTAATTTAATGTAAAATTTGG-------
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64646129 298 -  72162052 TAAAAGCAGATGAGACGTTTTTTCCACCCT-C---TGAGG-------CATTAGATTGCTTTGCGCAAGTTACACTTTTAATATAGCTAACTAATTTGAT--AAATTTACCTGGTAATTTATGTCAT-------------TCAGCAATGTAGAATTGTATCTTGTTATTTGGTGCC--GTGAAATGCTAGGGAATACCACCTTAGGAGATTTGGATGAA-AATTTAATATGACTTGGTTGGTTTGACTCCCATTGT-------------------CAGAAGATAA----CTGTATCATGTCCTTTCCACCCATAAGCTTTTGTGATAATGGAATGTGAAATCTGGG-AGCAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1064858 298 +   1314817 TAAAAGCAGATGAGAC-CTTTTTCCACCCT-C---TGAGG-------CATTAGATTGCTTTGCCCAAGTTACACTTTTAATATAGCTAACTAATTTGAT--AAATATATCCGGTAATTTATGTCAT-------------TCAGCGATGTGGAATTGTATCTCGTCATTTGGTGCC--GTGAAATGCTAGGGAATGCCACTTTAAGAGATTTAGATGAA-AATTTAATATGACTTGGTTGGTTTGACTCCCATTAT-------------------CAGAAGATAA----CGGTATCATGTGCTTTCCACCCATAAGCTTTTGTGATAATGGAATGTGAAATCTGGGAAGCCT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6416637 298 -   6597006 TAAAAGCAGATGAGAC-CTTTTTCCACCCT-T---TGAGG-------CATTAGATTGCTTTGCCCAAGTTACACTTTAAATATAGCTAACTAATTTGAT--AAATTTATCTGGTAATTTATGTCAT-------------TCAGCAATGTGGAATTGTATCTTGTTATTTGGTGCT--GTGAAATGCTAGGGAATGCCACCTTAAGAGATTTGGATGAA-AATTTAATATGACTTGGTTGGTTTGACTCCCATTAT-------------------CAGAAGATAA----CTGTATCATATGCTTTCCAACCACAAGCTTTTGTGATAATGGAATGTGAAATCTGGGAAGCAT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19656690 314 -  27850971 taaaaGCAGGTGAGGT-TTCCCATTGCATTGC---TGAGG-------CATACAATGTATTTGCCAGAGTCACACTTTTAATTTATCTGATTAATTTGAT--GAACTTATCTGGTAATTTATCTGGC-------------TCAGCATTATGGAATTGTATCATCTC-TTTGGTACT--AT-AAATGTTAGCTAATAC-ACTTCAGGAGCTATGGAAGAATCATTTAAT----CTTTTTTGATTTTACTCCTATTATC-AGTATACAGCAGGGCTAAAGTAGATAATTACTTATGCTGAATATCCTCCAGCTATATAATTGTATGCTTACTGAATGTGAAATTTGGG-AGCAT
i otoGar3.GL873538             I 332 C 0
s canFam3.chr2                  79109263 302 -  85426708 AAAAATTAGCTAAGTG-CCT----CATCCT-CAAATAAGG-------TATTTAATAACTGTGCCAAAGTCACACTTTTAGTGTAGCTAATTAATTTAAT--GAATTTGTTTGGTAATTTATTTCAT-------------TCAGCATTAAGGAATTGTTTCATCTCTTTTG------------ATGCTAGGTAAtgccactttaggaactttggacaaatcatgtaac----cttttttggttttactcccattatc-agtaggaaatggaattaaagttgataa----ttacttttaataccctctagctataaaattttatggttATCAAATATGAAATTTGGGGAGCAT
i canFam3.chr2                 C 0 I 2
s dasNov3.JH570393               1733142 328 -   2296528 -AAAAAGAAATTGAGC--------TGCCCT-T---TAGGGGCCATTACTTTAAAGTACTTTGCCAAAGTCACACTTTTAAGTATTCTGATTAATTTAATGAGAATTTTTCTGGTAATTTATCTGATGAAATTATATTACTCAGTATTATAGAATTGTACTGTATGTTTTGGTGACTTATAAAATGCTAGGTAATGATGCTTTAGGAGCTTTGGGTGAATTATTTAAT----CTTTCTGGGTTTTAGTCCTATTAGC-AATAGATAACAAGGCTAAAGTAGATAA----TTAC-TTATATACCCTACAGCTATAAAGCTTACTAGTTACTGAGTTGGAAACTTGGGAGCCTT
i dasNov3.JH570393             C 0 I 1
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=672902.000000
s hg38.chr14_GL000009v2_random     31659 75 +    201709 CTCGTTTTCCAGAATTCTGCAC-----TAGGAACTCAGCAGTTTCATTCTGCTTCTTGTGTTGTGGCAAACAAACATTGG
s panTro5.chr9                  41707634 71 + 116767853 CTCGTTTTCCAGAATTCTGCAC-----TAGAAACTCAGCAGTTTCACTCTGCTTCTTGTGTTGTGG----CAAACATTGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053056 71 - 114479721 CTCATTTTCCAGAATTCTGCAC-----TAGAAACTCAGCAGTTTCACTCTGCTTCTTGTGTTGTGG----CAAACTTTTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88674 71 -    416926 CTCATTTTCCAGAATTCTGCAC-----TAGAAACTCAGCAGTTTCACTCTGCTTCTTGTGTTGTGG----CAAACTTTGG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40825364 71 + 122973662 CTCATTTTCCAGAATTCTACAC-----TAGAAACTCAGCAGTTTCACTCTGCTTCTTGTGTTGTGG----CAAACTTTTG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520540 71 - 111343173 CTCATTTTCCAGGATTCTGCAC-----TAGCAACTCAGCAGTTTCACTCAGCTCCTTGTGTTGTGA----CAAACTTTGG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111101904 71 - 111193037 CGCATTTTCCAGAATTCTGCAC-----TAGAAACTCAGCAGTTTCACTCTGCTTCTTGTGTTGTGG----CAAACTTTGG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          360241 71 +    434444 CTTGTTTTCCAGAATTCTGCAC-----TAGAAACTCAGCAGTTTCACTCTGCTTCTTGTGTTGTGG----CAAACTTTGG
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66457310 71 +  90373283 CGCATTTTCCAGAATTCTGCAC-----TAGAAGTTCAGCAATTTCACTCTCCTTTTTGTGTTGTGG----CAAACTTTTG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507749 71 -   1547936 CTTGTTTTCCAGAATTCTGCAC-----TAGAAGGTCAGCAATTTCACTCTGCTTTTTGTGTTGTGG----CAAACTTTTG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           23275 71 +    168452 TGCGCTTTCCAGAATTCTGCAC-----TAGAAACTCAGCAGTTTCACTCTGCTTCTTGTGTTGTGG----CAAACTTTGG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385537 42 - 210400635 ----------------------------------TCAGCAGTTTCGCTCTGCTCCTTGTGGTGTGG----CAAACTTTGA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64646427 71 -  72162052 CTCATTTTCCAGAATTGTGCAC-----TAGCAACTCAGCAGTTTCACTCTGGTTTCTGTGTTGTGG----AGAACTTTCG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065156 71 +   1314817 CTCATTTTCCAGAATTCTGCAC-----TAGCAACTCAGCAGTTTCACTCTGGTTCCTGTGTTGTGG----CAAACTTTGG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6416935 71 -   6597006 CTCATTTTCCAGAATTGTGCAC-----TAGCAACTCAGCAGTTTCACTCTGGTTCCTGTGTTGTGG----CAAACTTTGG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19657004 67 -  27850971 CTCATTTTCCAGAATTCTATACCAGCATAGCAACTCAGCAGTTTCGCTTTGCTTCTTGTGTTACAG----C---------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79109567 64 -  85426708 CTCATTTCCCAAAATTCTACAC-----TAA-----TATCAGTTTTGCTCTGCTT--TGTTTTATGG----TGAACTTTGC
i canFam3.chr2                 I 2 C 0
s dasNov3.JH570393               1733471 72 -   2296528 CTTATTTCCCAGAACCTTGCTCT----TAATAGTTCAGCAGCTTCATTCTGCTTCTTGTGCTGCAG----GAAATTTTGC
i dasNov3.JH570393             I 1 C 0
e eulFla1.LGHW01017480v1           15831 1997 +     23046 I
e eulMac1.LGHX01018222v1           15830 1997 +     23045 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=430588.000000
s hg38.chr14_GL000009v2_random     31734 51 +    201709 TTCC-CATAGTTCAGGGAGAAC---TTTCA-CTTTTTTGATATCCC-AGGATTC--aaa
s panTro5.chr9                  41707705 53 + 116767853 TTCC-CATAGTTCAGGGAGAAT---TTTCA-CTTTTTTGATATCCC-AGGATTCaaaaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053127 48 - 114479721 TTCC-TATAGTTCAGGGAGAAG---TTTCA-CTTTTTTGATATCAC-AGGATTC-----
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88745 46 -    416926 TTCC-CATAATTCA--GAGAAC---CTTTA-CTTTTTTGATATCAC-AGGATTC-----
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40825435 51 + 122973662 TTCC-CATAGTTCAGGGAGCCC---CTTTAGTTTTTTTGATATCCC-AGGATTC---AA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520611 52 - 111343173 TTCCTCAT--TTCAGTGAGCAC---CTTCA-CTTTTTTGGTATCCC-AGGATCCAAATG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111101975 53 - 111193037 TTCC-CATCCTTCAGGGAGCAC---GTTTA-CTTTTTTGATATCCC-AGGATTCAAATG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          360312 53 +    434444 TTCC-CATCCTTCAGGGAGCAC---ATTTA-CTTTTTTGATATCCC-AGGATTCAAATG
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66457381 53 +  90373283 TTCC-CATAGTTCAGAGAGCAC---CTTTA-CTTTTTTGATATCCC-AGGATTCAAATG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507820 53 -   1547936 TTCC-CATAGTTCAGAGAGCAC---CTTTA-CTTTTTTGATATCCC-AGGATTCAAATG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           23346 53 +    168452 TTCC-CATCATTCAGGGAGCAC---GTTTA-CTTTTGTGATATCCC-AGGATTCAAATA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385579 55 - 210400635 TTCC-TCTATTGCAGTGAGTACCTTCACTT-T-TTTTTGATATCCC-AAGATCCAAATG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64646498 52 -  72162052 TTCT-TATAGTTCAGGGAGTAC---CATTG-C-TTTTTAATATCCT-GGGATTCAAATA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065227 53 +   1314817 TTCT-TATAGTTCAGGGAGTAC---CATTA-CTTTTTTAATATCCT-GGGATTCaaata
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417006 53 -   6597006 TTCT-TATAGTTCAGGGAGTAC---CATTA-CTTTTTTAACATCCT-GGGATTCAAATA
i aotNan1.NW_018488791v1       C 0 C 0
s eulMac1.LGHX01018222v1           17827 51 +     23045 TTCC-TATATTTCAGCGAGCAC---CTTCA-CTTTTTTCATGTCCC-AGGATCCAAA--
i eulMac1.LGHX01018222v1       I 1997 N 0
s eulFla1.LGHW01017480v1           17828 51 +     23046 TTCC-TATATTTCAGCGAGCAC---CTTCA-CTTTTTTCATGTCCC-AGGATCCAAA--
i eulFla1.LGHW01017480v1       I 1997 I 81
s otoGar3.GL873538              19657071 40 -  27850971 ----------TTCAGTGAGCAC---CTT---CTATTTTGATATCCC-AAGATCCAAA--
i otoGar3.GL873538             C 0 I 1
s canFam3.chr2                  79109631 48 -  85426708 TTCA-CATATTTTAATGAACAG-----TGA-C--TTTTGATAGCCCTAGGATCCAAA--
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1733543 51 -   2296528 TTCA-CATGTTTCAGTGAGCAG---CTTCA-CTTTTTTGATATCCC-CAGGTTCcaa--
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=536.000000
s hg38.chr14_GL000009v2_random     31785 1 +    201709 a
s panTro5.chr9                  41707758 1 + 116767853 a
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015896v1           88791 1 -    416926 A
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40825486 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520663 1 - 111343173 A
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111102028 1 - 111193037 G
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          360365 1 +    434444 A
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66457434 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507873 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           23399 1 +    168452 A
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385634 1 - 210400635 A
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64646550 1 -  72162052 T
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065280 1 +   1314817 t
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417059 1 -   6597006 T
i aotNan1.NW_018488791v1       C 0 C 0
s dasNov3.JH570393               1733594 1 -   2296528 a
i dasNov3.JH570393             C 0 C 0
e eulFla1.LGHW01017480v1           17879 81 +     23046 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79109679 1 -  85426708 I
e otoGar3.GL873538              19657111 1 -  27850971 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e panPan2.chr13                 96053175 0 - 114479721 C
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=26890.000000
s hg38.chr14_GL000009v2_random     31786 12 +    201709 aaaaaaaaa-------------aaa
s panTro5.chr9                  41707759 12 + 116767853 aaaaaaaaa-------------aaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053175 12 - 114479721 AAAAAAAAA-------------AGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88792 12 -    416926 AAAAAAAAA-------------AGA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40825487 12 + 122973662 GAAAAAAAC-------------GGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520664  9 - 111343173 AAAAATAAG----------------
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111102029 25 - 111193037 AAGAAAAAAAAAAAAAAGAGAGAGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          360366 12 +    434444 AAAAACAAA-------------AGA
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66457435 12 +  90373283 AAAAACAAA-------------AGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507874 12 -   1547936 AAAAACAAA-------------AGA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           23400 13 +    168452 AAAAAAAGA------------GAGA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385635  9 - 210400635 AAAAAACAA----------------
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64646551  9 -  72162052 TTAAAACAA----------------
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065281  9 +   1314817 taaaaaaat----------------
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417060  9 -   6597006 TAAAAAAAA----------------
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19657112  9 -  27850971 ---GAAAGA-------------CGA
i otoGar3.GL873538             I 1 C 0
s canFam3.chr2                  79109680 10 -  85426708 --GAAAAAA-------------AGA
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1733595 12 -   2296528 taaaaaaga-------------gaa
i dasNov3.JH570393             C 0 I 369
e eulFla1.LGHW01017480v1           17879 81 +     23046 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=6422.000000
s hg38.chr14_GL000009v2_random     31798 2 +    201709 ga
s panTro5.chr9                  41707771 2 + 116767853 ga
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053187 2 - 114479721 GA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88804 2 -    416926 GA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40825499 2 + 122973662 GA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111102054 2 - 111193037 GA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          360378 2 +    434444 GA
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66457447 2 +  90373283 GA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507886 2 -   1547936 GA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           23413 2 +    168452 GA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385644 1 - 210400635 -A
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64646560 2 -  72162052 TA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065290 1 +   1314817 -a
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417069 2 -   6597006 AA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19657121 2 -  27850971 AT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79109690 2 -  85426708 AT
i canFam3.chr2                 C 0 C 0
e rheMac8.chr15                   520673 0 - 111343173 C
e eulFla1.LGHW01017480v1           17879 81 +     23046 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1733607 369 -   2296528 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=603716.000000
s hg38.chr14_GL000009v2_random     31800 64 +    201709 gata---aaaGGCAGTGGGGAAAAGAATAGCTCAGTGCAGAAAAGGGAAA----------ACTTCTTTACTGTTCTT
s panTro5.chr9                  41707773 64 + 116767853 gata---aaaGGCAGTGGGGAAAAGAATAGCTCAGTGCAGAAAAGGGAAA----------ACTTCTTTACTGTTCCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053189 64 - 114479721 GATA---AAAGGCAGTGGGGAAAAGAATAGCTCAGTGCAGAAAAGGGAAA----------ACTTCTTTACTGTTCCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88806 64 -    416926 GATA---AAAGGCAGTGGGGAAAAGAATAGCTCAGTACAGAAAAGGGAAA----------ACTTCTTTACTGTTCCT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40825501 64 + 122973662 GATA---AAAAGCAGTGGGAAAAAGAATAGCTTAGTGCAGAAAAGGGAAA----------GCTTCTTTTCTGTTCCT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520673 64 - 111343173 GAGA---ACAAGCAGTGGGGAAAAGAATAGCTTAGTGCAGAAAAGGGAAA----------GCTTCTTTTCTGTTTCT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111102056 63 - 111193037 GATA---AAAGGCAGTGGGGAAAAGAATAGCTTAGTGCAGAAAAGGGAAA-----------CTTCTTTACTGTTCCT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          360380 74 +    434444 CATG---AAAGGCAGTGGGGAAAAGAATAGCTTAGTGCAGAAAAGGGAAAGCTTCTTTAAGCTTCTTTACTGTTCCC
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66457449 74 +  90373283 GATG---AAAGGCAGTGGGGAAAAGAATAGCTTAGTGCAGAAAAGGGAAAGTTTCTTTAAGCTTCTTTACTGTTCCT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507888 74 -   1547936 GAGG---AAAGGCAGTGGGGAAAAGAATAGCTTAGTGCAGAAAAGGGAAAGCTTCTTTAAGCTTCTTTACTGTTCCC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           23415 64 +    168452 GATA---AAAGGCAGTGGGGAAAAGAATAGCTTAGTGCAGAAAAGGGAAA----------GCTTCTTTACTGTTCCT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385645 64 - 210400635 AGTA---AAAGGCAGTGGGAAAAAGAATAACTTAGTGCAGAAAAGGAATA----------GCTTCTTTTCTTTTCCT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64646562 64 -  72162052 AATA---AAAGGCAATGGCTAAAAGAATAGCTTAGTGCAGAAAAGGGAAA----------GCTTCTTTTATGTTCCT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065291 67 +   1314817 aataaataaaGGCAGTGGCTAAAAGAATAGCTTAGTACAGAAAAGAGAAA----------GCTTCTTTTATGTTCCT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417071 64 -   6597006 AATA---AAAGGCAGTGGCTAAAAGAATAGCTTAGTGCAGAAAAGGGAAA----------GCTTCTTTTATGTTCCT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19657123 43 -  27850971 GATA---GAAAGCAGTAGGGAAAAGAATACCTTAGTGCAGAAACAC-------------------------------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79109692 63 -  85426708 TATA---AGAAGCAGTTGGGGAAAGAACAGCTCAATGCA-AAAATGGAAA----------CCTTTCTATTTGTTCCT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1733976 64 -   2296528 tata---aaaggcaaTAAGAGAAAGGAAAGCTTAGTGTAGAGAGGGGAAT----------GTTCTCTTTCTCTTGCT
i dasNov3.JH570393             I 369 C 0
e eulFla1.LGHW01017480v1           17879 81 +     23046 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=753491.000000
s hg38.chr14_GL000009v2_random     31864 67 +    201709 GAAGGCCTACAAGGTTACATCCTCTTAATCTGGCTATTTCATGTAAAATCCATGTGGCAATGACAGA
s panTro5.chr9                  41707837 67 + 116767853 GAAGCCCCACAAGGTCACATCCTCTTAATCTGGCTATTTCATGTAAAATCCAGGTGGCAATGACAGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053253 67 - 114479721 GAAGCCCTACAAGGTCACATCCTTTTAATCTGACTATTTCATGTAAAATCCAGGTGGCAATGACAGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88870 67 -    416926 GAAGCCCTACAAGGTCACATCCTCTTAATCTGGCTATTTCATGTAAAATCCAGGTGGTAAAGACAGA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40825565 67 + 122973662 GAAGCCCTACAAGGTCACATCCTCTTTATCTGGCTATTTCATGTAAAATCCAGGTGGTAAAGACAGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520737 66 - 111343173 GAGGCCCCAC-ATGTCACATCCTCTCAATCTGGCTATTTCATGGAGAATCCAGGTGACAAAGACAGA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111102119 67 - 111193037 GAAGCCCCACAAGGTCACATCCTCTTCATCTGGCTATTTCATGTAACATCCAGGTGGTAAAGACAGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          360454 67 +    434444 GAAGCCCTACAAGGTCACATCCTCTTAATCTGGCTATTTCATGTAAAATCCAGGCGGTAAAGACAGA
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66457523 67 +  90373283 GAAGTCCTACAAGGTCACATCCTCTTCATCTGGCTATTTCATGTAAAATCCAGGTGGTAAAGACAGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1507962 67 -   1547936 GAAGCCCTACAAGGTCACATCCTCTTAATCTGGCTATTTCATGTAAAATCCAGGTGGTAAAGACAGA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           23479 67 +    168452 GAAACCCTACAAGTTCACATCCTCTTCATCTGGCTATTTCATGTGAAATCCAGGTGGTAAAGACAGA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385709 52 - 210400635 GAAGTCTCACAAGGTCGTATTTTCTCAATGTGGCTA---------------GGGTGACAAAGACAGA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64646626 66 -  72162052 GAAGCCCC-CAAGGTCACATCCTTTCAATCTGGCTATTTCATGTAAAATCCAGGTGGTAAAGACAGA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065358 67 +   1314817 GAAGCCCCACAAGGTCACATCCTCTCAATCTGGCTATTTCATGTAAAATCCAGGTGGTAAAGACAGA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417135 66 -   6597006 GAAGCCCC-CAAGGTCACATCCTCTCAATCTGGCTATTTCATGTAAAATCCAGGTGGTAAAGATAGA
i aotNan1.NW_018488791v1       C 0 C 0
s eulFla1.LGHW01017480v1           17960 67 +     23046 GAAGCCCCACAATGTCACATCCTCTAAATCTGGCTGTTGAATGTAAAGTCCAGGTGGTAAAGACAGA
i eulFla1.LGHW01017480v1       I 81 N 0
s otoGar3.GL873538              19657166 66 -  27850971 CAAGTCTGACAATGTCACATCCTCTAAATCTGGCTGTT-AATGTAAAGTCCAGGAGGTAAAGACAGA
i otoGar3.GL873538             C 0 I 3
s canFam3.chr2                  79109755 65 -  85426708 GGAGCACCACAATGTCACATCCTTTAAATCTGTCTGTTTA--GGCAAACCCAGGTGGTAAAGACAGA
i canFam3.chr2                 C 0 I 3
s dasNov3.JH570393               1734040 66 -   2296528 GAAG-CCTACAATATTATATTCTCTAGATCTTGCTGTTTAATGCAAAGGCCAGGGAATAAAGGCAGA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=328424.000000
s hg38.chr14_GL000009v2_random     31931 37 +    201709 ---AGATATATGT-TATGC----------CTGTG-TCTTTTTATTTCTCTGT
s panTro5.chr9                  41707904 37 + 116767853 ---AGATATATGT-TATGC----------CTGTG-TCTTTTTATTTCTCTGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053320 38 - 114479721 ---AGATATATGT-TATGC----------CTGTGTTTTTTTTATTTCTCTGT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88937 37 -    416926 ---AGACATATGT-TATGC----------CTGTG-TCTTTTTATTTCTCTGT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40825632 37 + 122973662 ---AGACATATGT-TATGC----------CTGTG-TCTTTTTATTTCTCTGT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520803 37 - 111343173 ---AGACACATTT-TATGC----------CTGTG-TCTTTTTGTTTCTCTGT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111102186 37 - 111193037 ---AGACATATGT-TACGC----------CTGTG-TCTTTTTATTTCTCTGT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          360521 37 +    434444 ---AGACATATGT-TATGT----------CTGTG-TCTTTTTATTTCTCTGT
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66457590 37 +  90373283 ---AGACATATGT-TACGC----------CTGTG-TCTTTTTATTTCTCTGT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508029 37 -   1547936 ---AGACATATGT-TATGT----------CTGTG-TCTTTTTATTTCTCTGT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           23546 37 +    168452 ---AGACATATGT-TACAC----------CTGTG-TCTTTTTATTTCTGTGT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385761 37 - 210400635 ---AGACACATTT-TCTGT----------CTGTG-TCTCTTTGTTTCTCTGT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64646692 37 -  72162052 ---AGACATATCT-TATAT----------CTGTG-CCATTTTATTTCTCTGT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065425 37 +   1314817 ---AGACATACCT-TATAT----------CTGTG-CCATTTTATTTCTCTGT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417201 37 -   6597006 ---AGACATATCT-TATAT----------CTGCG-CCATTTTATTTCTCTGT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19657235 25 -  27850971 ---TGACACATTT-----------------TGTG-TCTTTT------TCTGG
i otoGar3.GL873538             I 3 C 0
s canFam3.chr2                  79109823 38 -  85426708 ---GGACAAATTTTTGTGT----------CTTTG-TCTTTTTATTTCTTTGA
i canFam3.chr2                 I 3 I 2
s dasNov3.JH570393               1734106 50 -   2296528 AAAGGACACATTT-TGTACTGTTGTCTTTTAATG-TCTTTTAATTTTCCTGT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=16416.000000
s hg38.chr14_GL000009v2_random     31968 2 +    201709 TT
s panTro5.chr9                  41707941 2 + 116767853 TT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053358 2 - 114479721 TT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88974 2 -    416926 TT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40825669 2 + 122973662 TT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520840 2 - 111343173 TT
i rheMac8.chr15                C 0 I 5
s macFas5.chr13                111102223 2 - 111193037 TT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          360558 2 +    434444 TT
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66457627 2 +  90373283 TT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508066 2 -   1547936 TT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           23583 2 +    168452 TT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64646729 2 -  72162052 TT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065462 2 +   1314817 TT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417238 2 -   6597006 TT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19657260 2 -  27850971 TT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79109863 1 -  85426708 T-
i canFam3.chr2                 I 2 C 0
s dasNov3.JH570393               1734156 2 -   2296528 TT
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798 0 - 210400635 C
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=1414771.000000
s hg38.chr14_GL000009v2_random     31970 218 +    201709 CTGCCAGTCAACT-AGCATAAACATTT--ATATCAGATAGCAAAGAGTGGATGCGAATAAAAGCACAAAATGGAGAAGAGTCCTTTTTGAAATTTTGG---AAAATTCTTCCATTCACTCAAACAGAAATG-AGCAGACTTGACAAAA--ATTTCaatgataaaatgat--ga-----gtatcttataatt-----------attatgtataatgataaAATTAAAGTAAGCA-CAAAATACTTTT
s panTro5.chr9                  41707943 218 + 116767853 CTGCCAGTCAGAT-AGCATAAACATTT--ATATCAGATAGCAAAGAGTGGATGTGAATAAAAGCACAAAATGGAGAAGAGTCCTTTTTGAAATTTTGG---AAAATTCTTCCATTTACTCAAACAGAAATG-AGCAGACTTGACAAAA--ATTTCAATGACAAaatgat--ga-----gtatcttataatt-----------attatgtataatgataaAATTAAAGTAAGCA-CAAAATACTTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053360 218 - 114479721 CTGCCAATCAGAT-AGCATAAACACTT--ATATCAGATAGCAAAGAGTGGATGGGAATAAAAACACAAAATGGAGAAGAGCCCTTTTTGAAATTTTGG---AAAATTCTTCCATTCACACAAACAGAAATG-AGAAGACTTGACAAAA--ATTTCaatgacaaaatgat--ga-----gtatattataatt-----------attatgtataatgataaAATTAAAGTAAGCA-CAAAATACTTTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           88976 223 -    416926 CTGCCAGCCAGAT-AGCATAAAAATTT--ATACCAGATAGCAAAGAGTGGATGGGAATAAAAGCACAAAATGGAGAAGAGCCCTTTTTGAAATTTT-G---AAAATTCTTCTATTCACTCAAACAGAAATG-AGCAGACTTGACAAAA--ATTTCaatgataaaatgat--ga-----gtatcttataattata-----ataattatgtataatgataaAATTAAAGTAAGCA-CAAAATACTTTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40825671 215 + 122973662 CTGCCAGTCAGAT-AGCATAAACATTT--ATATCAGATAGC--AGAGTGGGTAGGAATAAAAGCACAAAATGGAGAAGAGCCCTTTTTGAAATTTTGG---AAAATTCTTCTATTCACTCAAACAGAAATG-AGCAGACTTTACAAAA--ATTTCAATGATGAGATAA---GA-----ATATCTTATAATA-----------ACTAGGTATAATGATAAAATTAAATTAAGCA-CAAAATATTTTT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111102225 224 - 111193037 CTGCCAGTCAGAT-AGCATAAAAATTT--ATATCAGGCAGCAAAGAGTGGATGGGAATAAAAGCACAAAATGGAGAAGAGTCCTTTTTGAAATTTTGT---AAAATTCTTCTGTTCACTCAAACAGAAATA-AGCAGACTCGGCAAAA--ATTTCAATGGTAAAATGAT--GA-----GTACCTTATAATTATA-----ATCATTATGTACAATGATAAAATTAAAGTAAACA-CAAAATACTTTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          360560 225 +    434444 CTGCCAGTCAGAT-AGCATAAAAATTT--ATATCAGGCAGCAAAGAGTGGATGGGAATAAAAGCACCAAGTGGAGAAGAGCCCTTGTTGAAATTTTGG---AAAATTCTTCTATTCACTCAAACAGAAATG-AGCAGACTTTACAAAAATATTTCACTGATGAAATAA---GA-----ATATCTTACAATTATA-----ATAGTTATGTATAATGATAAAATTAAATTAAGCC-CAAAATATTTTT
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66457629 219 +  90373283 CTGC----CAGAT-AGCATACAAATTT--ATATCAGGTTGCAAAGAGTGGATGGGAATAAAAGCACAAAGTGGAGAAGAGCCCTTGTTGAAATTTTGG---AAAATTCTTCTATTCACTCAAACAGAAATG-AGCAGGCTTTACAAAA--ATTTCAATGATGAAATAA---GA-----ATATCTTACAATTATA-----ATAGTTATGTATAATGATAAAATTAAATTAAGCA-CAAAATATTTTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508068 225 -   1547936 CTGCCAGTCAGAT-AGCATAAAAATTT--ATATCGGCTAGCAAAGAGTGGATGGGAATAAAAGCACGAAGTGGAGAAGGGCCCTTGTTGAAATTTTGG---AAAATTCTTCTATTCACTCAAACAGAAATG-AGCAGACTTTACAAAAATATTTCAATGATGAAATAA---GA-----ATATCTTACAATTTTA-----ATAGTTACGTATAATGATAAAATTAAATTAAGCC-CAAAATATTTTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           23585 224 +    168452 CTGCCAGTCAGAT-AGCATAAAAATTT--ATATCAGGTAGCAAAGAGTGGATGGGAATAAAAGCACAAAATGGAAAAGAGCCCTTTTTGAAATTTTGT---AAAATTCTTCTGTTCACTCAAACAGAAATG-AGCAGACTTGGCAAAA--ATTTCAATGATAAAATGAT--GA-----GTACCTTATAATTATA-----ATAATTATGTGCAATGATAAAATTAAAGTAAGCA-CAAAATACTTTT
i colAng1.NW_012121088v1       C 0 M 1095
s saiBol1.JH378105              64646731 224 -  72162052 CTACCAGTCAGAT-AGCATAAAAATTC--ATACCGGATAGCAAAGAGTGGATGGGAATAAAAGCACAAAATGGAGGAGAACGCTT-CTGAAATTTTGG---AAACTTCTTTTATTCATTTAGAAAGAAATG-AGCAGACTTTACAAAA--ATTTCAGTGATGGAGTGATAAGA-----ATATCTTATAAGTATGTGATAATAATTATGTATAATGA------TAAAGTAAGCA-Caaaatattttt
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065464 227 +   1314817 CTGCCAGTCAGAT-AGCATAAAAATTC--ATATCAGATAGCAAAGAGTGGATGAGAATAAAAGCACAAAATGGAGGAGAACACTT-CTGAAATTCAGG---AAAATTCTTTTATTCATTCAGACAGAAATG-AGCAGACTTTACAAAA--ATTTCAGTGATGGAATGATAAGA-----ATGTCTTATAAGTATGTG---ATAATTATGTATAATGATAAAATTAAAGTAAGCA-CAAAATATTTTT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417240 219 -   6597006 CTGCCAGTCAGAT-AGCATAAAAAATC--ATATCAGATAGCAAAGAGTGGATGGGAATAAAAGCACAAAATGGAGGAGAGCCCTT-TTGAAATTTTGG---AAAATTCTTTTATTCATTCAGACAGAAATG-GTCAGACTTTACAAAA--ATTTCAGTGATGGAATGA----------------TATAAGTAAGTGATAATAATTACGTATAATGATAAAATTAAAGTAAGCA-CAAAATATTTTT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19657262 204 -  27850971 ----CTGCCAAAC-AGTATGAAAATTC--AAATGAGTTACTGAAGAGTGGATGGGAATAAAAGCACAATATCAATAAGAATCCTTTTGGAAATTTTGG---AAAATTCTGT--TTCACTCAAACCTAAATGAAACAGAATTTGCAAAA--ATTTCAATGataaaattat--aataattatatCATCTAACTATGAT---ATGATTATATATAATGATGAGCGT-----------------------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79109864 175 -  85426708 TTGCTGATCAGAT-GTGGTGAAGTTGGGAATATTAGGTGGCAAAGTATAGATATGAAT------ATAAAATTAAGAAT-GCCCTTTTTGAAATTTTAG---AAAATTCTGTT-TTTATTCAAACAGGAATGAAGCAGAATTTACAAAA--ATT------------------GC-----A-----------------------ATCACATGTAATGATG----------AAGTG-CAAAATATTTTT
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1734158 187 -   2296528 CTGCTAGTCAGATGAGAGTAAAAATGT----------TAGTGACAGGTAGATCTAAATAAGAGCATAGAATTAAGAAAAGTCTTT-TTGAAATTTTGGGGCAATTTTGCTTTTTTCACTTATACAGAAATGAAGAAGAGTTTACAAAA--ATTTCAAT-------------GA-----CT----------------------------TGTAATCATGAAATTAAAGTAAGCACCAAAATATTTTT
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798   0 - 210400635 C
e rheMac8.chr15                   520842   5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=1404795.000000
s hg38.chr14_GL000009v2_random     32188 243 +    201709 -ATCATTAAAATGGTGATAGTT-AACCTGAATCAAGTTAAAAAATC------AGGGAA------AAAGTT-tttttattgaataaaataat---aattattattcatatt--acttttattaAAGGTCAAAGAAGGAAATAATACAAACAAAAGTGAAAAAATACAACTATCAGAAAATGT----ATGTCATAGTACATCTTCTGC---TGCTGC------------TGACAGATTAACCAAAGAAAGAAAGATTGGGAAAACGTATCCTCAGCAATTTCCC
s panTro5.chr9                  41708161 243 + 116767853 -ATCATTAAAATGGTGATAGTT-AACCTGAATCAAGTGAAAAAATC------AGGGAA------AAAGTT-tttttattgaataaaataat---aattattattcatatt--aattttattaAAGGTCAAAGAAGGAAATAATACAAATAAAAGTGAAAAAATACAACTATCAGAAAATGT----ATGTCATAGTACATCTTCTGC---TGCTGC------------TGACAGATTAACCAAAGAAAGAAAGATTGGGAAAATGTATCCTCAGCAATTTCCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053578 244 - 114479721 -ATCATTAAAATGGTGATAGTT-AACCTGAATCAAGTGAAAAAATC------AGGGAA------AAAGTTCTTTTTATTGAATAAAACAAT---AATTATTATTCATATT--AATTTTATTAAAGGTCAAAGAAGGAAATAATACAAATAAAAGTGAAAAAATACAACTATCAGAAAATGT----ATGTCATAGTACATCTTCTGC---TGCTGC------------TGACAGATTAACCAAAGAAAGAAAGATTGGGAAAATGTATCCTCAGCAATTTCCC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89199 245 -    416926 -ATCATTAAAATGGTGATAGTT-AACCTGAATCAAGTGAAAAAATC------AGGGAA------AAAGTTCTTTTTATTGAATAAAATAATAACAATTATTATTCATATT--ACTTTTATTAAAGGTCAAAGAAGGAAATAATAC-AACAAAAGTGAAAAAATACAACTATCAGAAAATAT----ATGT-ATAGTACATCTTCTGC---TGCTGC------------TGGCAGATTAACCCAACAAAGAAAGATTGGGAAAACGTATCCTCAGCAATTTCCC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40825886 245 + 122973662 -ATGATTAAAATGGTGACAG-T-AACCTGAATCAAGTGAAAAAATC------AGGGAA------AAAGt--tatttattgaataaaataat---aattattattaatatt--acttttattaAAGGTCAAAGAAGGAAATAATACAAACAAAAGTGAAAAAATACAACTATCAGAAAATATAAAGATGTGATAGCACATCTTCTGC---TGCTGC------------TGACAGATTAACCCAACAAAGAAAGATTGGGAAGACATATCCTCAGCAATTTCCC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111102449 241 - 111193037 -ATGATAAAAATGGTGACATTT-AACCTGAATCAAGTGAAAAAATC------AGGGAA------AAAGTTCTTTTTATTGAATAAAATAATAACAATTATTATTCATATT--ACTTTTATTAAAGGTCAAAGAAGGAAATAATACAAACAAAAGTGAAAAAATACCAGTATCAGAAAATCT----ATGTGATCGCACA------GC---TGCTGC------------TGACAGATTACCCCAACAAAGAAAGACTGGGGAAATGCATCCTCAGCAGTTTCCC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          360785 231 +    434444 -ATGATTAAAATGGTGAC-----AACCTGAATCAAGTGAAAAAATC------AGGGAA------AAAGGTTTTTTTACTGAATAAAATAAT--TATTTATTA------------TTTTATTAAAGGTCAAAGAAGGAAATAATACAAACAAAAGTGAAAAAATACAACTATCAGAAAGTCT----ATGTGATTGCACATCTGCTGC---TGCTGC------------TGGCAGATTAACCCAACAAAGAAAGATTGGGAAAACATAGCCTCAGCAGTTTCCC
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66457848 226 +  90373283 -ATGATTAAAATGGTGAC-----AACCTGAATCAAGTGAAAAAATC------AGGGAA------AAA-GTTTTTTTATTGAATTAAATAAT------AATTA------------TTTTATTAAAGGTCAAAGAAGGAAATAATACAAACGAAAGTGAAAAAATACAACTATCAGAAAGTCT----ATGTGATCACACATCTGCTGC---TGCTGC------------TGGCAGATTAACCCAACAAAGAAAGATTGGGAAAACATATCCTCAGCAGTTTCCC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508293 227 -   1547936 -ATGATTAAAATGGTGAC-----AACCTGAATCAAGTGAAAAAATC------AGGGAA------AAAGGTTTTTCTACTGAATAAAATATT------TATTA------------TTTTATTAAAGGTCAAAGAAGGAAATAATACAAACAAAAGTGAAAAAATACAACTATCAGAAAGTCT----ATGTGATTGCACATCTGCTGC---TGCTGC------------TGGCAGATTAACCCAACAAAGAAAGACTGGGAAAACATACCCTCAGCAGTTTCCC
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64646955 241 -  72162052 -attatttaaatGGTGACAGTT-AACCGGAATCAAGTGATAATATC------AGGGAA------AGAATTCtttttattgaataaaataat------tattattcatatt--acttttattaaaGGTCGAAGAAGGAAAGAATACAAACAAAAGTGAAGAGATACAACTGTCAGAAAATAC----ATGGGACAGTACATCTTCTGA---TGCCAC------------TGTTGAATTAACCCAACAAACAAAGATCAGGAAAACGAGTCCTCAGCAATTTCCC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065691 241 +   1314817 -ATGATTAAAGTGGTGACAGTT-AACCTGAATCAAGTGATAATATC------AGGGAA------ataattctttttattgaataaaataat------tattattcatatt--acttttattaAAGGCCAAAGAAGGAAAAAATACAAACAAAAGTGAAGAAATACAACTGTCGGAAAATAC----ATGTGACAGTACATCTTCTGA---CGCCGC------------TGATGGATTAACCCAACAAAGAAAGATCAGGAAAACGTATCCTCAGCAATTTCCC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417459 241 -   6597006 -GTGATTTAAATGGTGACAGTT-AACCTGAATCAAATGATAATATT------AGGGAA------AGAATTCTTTTTATTGAATAAAATAAT------TATTGTTTATATT--ACTTTTATTAAAGGTCAAAGAAGGAAGGAATACAAACAAAAGTGAAGAAATACAACTATCAGAACATAT----ATGTGACAGTACATCTTCTGA---TGCCGC------------TGATGGATTAACCCAACAAAGAAAGATCAGGAAAACGTATCCTCAGCAATTTCCC
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19657466 258 -  27850971 -GGCACTAAAATCATGGCAATT-AAACTGAGTCAGGTGTTAAATTCAACCAAAAGAAA------AGAGTTCTGTTTGTTGAATAAGGTAGTAACAATTATCCTTCATATCAAACTTTCATTAAAGGTTGAAGAAGAAAGGAAGAAGCACAAAGGTAAAGAAATGCAGGTGTCAGAAAACCT----GTATGATGGTGCTGCTGCTGATAGTGATGA------------TGGTGGATTAATTCAACAAAGAAAGACTGGAAACATTGATAATCAGCAATTTACT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79110040 234 -  85426708 -TTGATTAAAATTATGAT-----GAACTGAGTCAAATGATATAATT------AATGAAG-----AAAATTCTTTTTAATGAATAAAGTAGTAACAATTATCCTTAGTATCAAATTTCCATTGAAGATTGAAAAAAAAAGGAAGAAGCAGAAGAGTAGTAAAATGGAAGGAGCAGAAAACAT----ATATG------------CTGC---TGCTGC------------TGCTGGACTAATTCAACAAAGAAAGAATGGCAAAACTGATAACCACCTGTTTCCT
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1734345 260 -   2296528 ATTGATTAAAATCATGACAATTAAACTTGAGTCAAATGATTAGATT------AGTGAAGACAAAATAGTTCTTTTTATTGAATGAAGTAGTGACAATTATGCTAAGTATCATACTTTCATTAAAGGTTGAAGAAGAAAGGAAGAAGCACAAAAGAAATGAAATGGAAGTATCAGAAAACTT----ATATG---------CTGCTGC---TGCTGCCGAGGAGAATGATGATGGATTAACTCAACAAAGAAAGAACAGAAAAATCGATAGTCAGCAATATCCT
i dasNov3.JH570393             C 0 I 28
e calJac3.chr1                 130385798   0 - 210400635 C
e rheMac8.chr15                   520842   5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=223409.000000
s hg38.chr14_GL000009v2_random     32431 47 +    201709 AAGAAACTGAAGGAAAAGCATGATAGGTAAGTAAGCCTATAGCAGtt
s panTro5.chr9                  41708404 47 + 116767853 AAGAAACTGAAGGAAGAGCATGATAGGTAAGTAAGCCTATAGCAGTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053822 47 - 114479721 AAGAAACTGAAGGAAGAGCATGATAGGTAAGTAAGCCTATAGCAGTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89444 47 -    416926 AAGAAACTGAAGGAAGAGCATGATAGGTAAGTAAGCCTATAGCAGTG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826131 43 + 122973662 AAGAAGCTGAAGGAAGAGCATGATAG----GTAAGCCTATAGCAGtg
i nomLeu3.chr1a                C 0 I 23
s macFas5.chr13                111102690 43 - 111193037 AAGAAGCTGAAGGAAGAGCGTGATAG----GTAAGCCTAGAGCACGG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361016 43 +    434444 AAGGAGGTGAAGGAAGAGCATGATAA----GTAAGCCTGTAGCGGTG
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66458074 43 +  90373283 AAGGTGGTGAAGGAAGAGCATGATAA----GTAAGCCTGTAGGGGTG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508520 43 -   1547936 AAGGAGGTGAAGGAAGAGCATGATAA----GTAAGCCTGTAGCGGTG
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647196 43 -  72162052 AAGGACGTGAAGGAAGAGCATGATAG----GTAAGTGTATGGCAGTT
i saiBol1.JH378105             C 0 I 4
s cebCap1.NW_016107851v1         1065932 43 +   1314817 AAGGACATGAAGGAAGAGCATGACAG----GTAAGCGTATGGCAGTT
i cebCap1.NW_016107851v1       C 0 I 3
s aotNan1.NW_018488791v1         6417700 43 -   6597006 AAGGATGTGAAGGAAAAGCATGATAG----GTAAGTGTATGGCAGTT
i aotNan1.NW_018488791v1       C 0 I 4
s otoGar3.GL873538              19657724 43 -  27850971 AGGAAGGAGAAAGAAAAGTGTGATAG----GTAAGACCATAACAATA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79110274 43 -  85426708 ACTATGAAGAATGAAGATTCTGATGC----GTAAGCCTATAGCAATA
i canFam3.chr2                 C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e dasNov3.JH570393               1734605 28 -   2296528 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2917169 1333 +   4212913 I

a score=-16259.000000
s hg38.chr14_GL000009v2_random     32478 2 +    201709 -tt
s panTro5.chr9                  41708451 2 + 116767853 -TG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053869 2 - 114479721 -TG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89491 2 -    416926 -TG
i gorGor5.CYUI01015896v1       C 0 C 0
s ponAbe2.chr21_random           2918502 2 +   4212913 -TG
i ponAbe2.chr21_random         I 1333 C 0
s nomLeu3.chr1a                 40826197 2 + 122973662 -tg
i nomLeu3.chr1a                I 23 C 0
s macFas5.chr13                111102733 1 - 111193037 --A
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361059 1 +    434444 --G
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66458117 1 +  90373283 --G
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508563 1 -   1547936 --G
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647243 2 -  72162052 -tg
i saiBol1.JH378105             I 4 C 0
s cebCap1.NW_016107851v1         1065978 2 +   1314817 -tg
i cebCap1.NW_016107851v1       I 3 C 0
s aotNan1.NW_018488791v1         6417747 2 -   6597006 -TG
i aotNan1.NW_018488791v1       I 4 C 0
s otoGar3.GL873538              19657767 2 -  27850971 -TT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79110317 2 -  85426708 TT-
i canFam3.chr2                 C 0 I 4
e calJac3.chr1                 130385798 0 - 210400635 C
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e dasNov3.JH570393               1734605 28 -   2296528 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M

a score=8281.000000
s hg38.chr14_GL000009v2_random     32480 1 +    201709 t
s panTro5.chr9                  41708453 1 + 116767853 t
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053871 1 - 114479721 t
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89493 1 -    416926 t
i gorGor5.CYUI01015896v1       C 0 C 0
s ponAbe2.chr21_random           2918504 1 +   4212913 T
i ponAbe2.chr21_random         C 0 I 1467
s nomLeu3.chr1a                 40826199 1 + 122973662 t
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111102734 1 - 111193037 t
i macFas5.chr13                C 0 I 1
s macNem1.NW_012012823v1          361060 1 +    434444 t
i macNem1.NW_012012823v1       C 0 I 1
s chlSab2.chr2                  66458118 1 +  90373283 t
i chlSab2.chr2                 C 0 I 1
s manLeu1.NW_012105442v1         1508564 1 -   1547936 t
i manLeu1.NW_012105442v1       C 0 I 1
s saiBol1.JH378105              64647245 1 -  72162052 t
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065980 1 +   1314817 t
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417749 1 -   6597006 t
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19657769 1 -  27850971 T
i otoGar3.GL873538             C 0 I 55
e calJac3.chr1                 130385798 0 - 210400635 C
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79110319 4 -  85426708 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e dasNov3.JH570393               1734605 28 -   2296528 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M

a score=616696.000000
s hg38.chr14_GL000009v2_random     32481 159 +    201709 t------------------tttttt----tt---------tttttttttttttgagatggagttcctctcttgttgcccaagctggaatgcaatggtgtgttctcacctcactgcaacctatgcatactgggttcaagtgattctcttgactcagcctccctagtagctgagattacagacatgtgccac
s panTro5.chr9                  41708454 157 + 116767853 t------------------tttttt----tt---------tttttttttttt--aaatggagtttctctcttgttgcccaagctggagtgcaatggtgtgttctcacctcactgcaccctatgcatactggattcaagtgattctcctgactcagcctccctagtacctgagattacaggcatgtgccac
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96053872 152 - 114479721 t------------------tgtttt----tt---------ttttttt-------aaatggagtttctctcttgttgcccaagctggagtgcaatggtgtgttctcacctcactgcaccctatgcatactggattcaagtgattctcctgactcagcctccctagtacctgagattacaggcatgtgccac
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89494 176 -    416926 tttttttttgtttgttttgtttttt----tt---------tttttttttttttgagatggagtttctctcttgttgcccaagctggagtgcaatggtgtgttctcagctcactgcaacctctgcctactgggttcaagtgattctcctgactcag-ctccctagtagctgagattacaggcatgtgccac
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826200 127 + 122973662 t------------------ttgttt----tg---------ttttgttttgtttgagatggagtttctctcttgttgctcaagctggagtggaatggtatgatcttggctcactgcaac--------------------------------ctcagcctccgtagtagctgggaatacaggcatgtgccac
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111102736 162 - 111193037 -------------------tttttt----tc---tttttctttttcttttttt--gatggagtttctctcttctttcccaagctggagtacaatggtgtgatctcggctcactgcaacctctgcttcccgagttcaagcaattctgctgcctcagcctccctagtagctgggattacaggcatgtgcctc
i macFas5.chr13                I 1 C 0
s macNem1.NW_012012823v1          361062 166 +    434444 -------------------ttgttt----tttgatttttttttttttttttttgagatggagtttctctcttgttgcccaagctgg-gtggaatggtgtgatcttggctaaccgcaacctctgcctcctggattcaagcaattctcctgcctcagcctccatagtagctgggattacaggcatgtgccac
i macNem1.NW_012012823v1       I 1 C 0
s chlSab2.chr2                  66458120 159 +  90373283 -------------------ttgttt----tttgg--------ttttcttttttgagatggagtttctctcttgttgcccaagctggagtggaatggtgtgatcttggcttactgcaacctctgcctcctggattcaagcaattctcctgcctcagcctccatagtagctgggattacaggcatgtgccac
i chlSab2.chr2                 I 1 C 0
s manLeu1.NW_012105442v1         1508566 161 -   1547936 -------------------ttgttt----tttgg------tttttttttttttgagatggagtttctctcttgttgcccaagctggagtggaatggtgtgatcttggctcaccgcaacctctgcctcctggattcaagcaattctcctgcctcagcctccatagtagctgggattacaggcatgtgccac
i manLeu1.NW_012105442v1       I 1 C 0
s saiBol1.JH378105              64647246 159 -  72162052 t------------------tcattt----tt---------tgtttgtttgtttgagatagagtttttctcttgctgcccaagctgccatgcaatggcataatattggctcactgcaacctccacctcctgggttcaagtgattctcccgcctcagccccccaagtagctatgattacaggggtgcgcctc
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1065981 158 +   1314817 t------------------ttgttt----tt---------tgtttgtttgtttgagacacagtttttctcttgttgcccaagctgccgtgcaatggcataacattggctcactgcaacct-catctcctgggttcaagtgattctcccccctcagcctcccaagttgctatgattacaggggtgcgcccc
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417750 163 -   6597006 t------------------ttattttttgtt---------tgtttgtttgtttgagacagagtttttctcttgttgcccaagctgcagtgcagtggcataatattggttcactgcaacctccacctcctgggttcaagtgattctcccgcctcagcctcccaagtagctaagattacaggggtgcacccc
i aotNan1.NW_018488791v1       C 0 C 0
e calJac3.chr1                 130385798   0 - 210400635 C
e rheMac8.chr15                   520842   5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79110319   4 -  85426708 I
e otoGar3.GL873538              19657770  55 -  27850971 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e dasNov3.JH570393               1734605  28 -   2296528 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=354115.000000
s hg38.chr14_GL000009v2_random     32640 65 +    201709 catgcctagctaatttcttgtat-ttttagtagaaatgaggtttcaccatgttatccaggcttgtc
s panTro5.chr9                  41708611 65 + 116767853 catgcccagctaattttttgtat-ttttagtagaaatgaggtttcaccatgttatccaggcttgtc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054024 65 - 114479721 catgcccagctaattttttgtat-ttttagtagaaatgaggtttcaccatgttatccaggcttgtc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89670 64 -    416926 catgcccggctaattttttgtat-ttttagta-aaatgaggtttcaccatgttagccaagctggtc
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826327 65 + 122973662 catgcccggctaattttttgtat-ttttagtagacatggggtttcaccatgttagccaggctggtc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111102898 65 - 111193037 catgcctggctaattttttgtat-ttttagtagaaatggggtttcaccctgttagccaggctggtc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361228 65 +    434444 tgtgcccagctaattttttgtat-ttttagtagacatggggtttcaccatgttagccaggctggtc
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66458279 65 +  90373283 cgtgcccagctaattttttgtat-ttttagtagacgtggggtttcaccatgttagccaggctggtc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508727 65 -   1547936 cgtgcccagctaattttttgtat-ttttagtagacatggggtttcaccatgttagccaggctggtg
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647405 65 -  72162052 tatgcccagctaattttttgtat-ttttattagaaatggggtttcaccatgttagccaggctggtc
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1066139 65 +   1314817 catgcccagctaatgttttgtat-ttttattagaaatggggtttcaccatgttagccaggctggtc
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417913 65 -   6597006 catgcccagctaattttttgtgt-ttttattagaaatggggtttcaccatgttagccaggctggtc
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19657825 50 -  27850971 CATGATTAACAAATTCTATATCTCTTTTACTagaga----------------tattcagccttgcc
i otoGar3.GL873538             I 55 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79110319  4 -  85426708 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e dasNov3.JH570393               1734605 28 -   2296528 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=417469.000000
s hg38.chr14_GL000009v2_random     32705 83 +    201709 tcgaacttctgacctcaggtgttctgcccacctcggcctcccaaagtgctgggtttacaggagtgagccaccgtgcctggccA
s panTro5.chr9                  41708676 83 + 116767853 tcgaactcctgacctcaggtgttctgcccacctcggcctcccaaactgctgggtttacaggagtgagccaccatgcctggccA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054089 83 - 114479721 tcgaactcctgacctcaggtgttctgcccacctcggcctcccaaactgctgggtttacaggagtgagccaccatgcctggccA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89734 83 -    416926 tcgaactcctgacttcaggtgttctgcccacctcggcctcccaaagtgctgggtttacaggagtgagccaccgtgcctggccA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826392 83 + 122973662 tcgaactcctgacctcaggtgttctgcccacctcagcctcccaaagtgctgggtttacaggagtgagccaccgtacctggcTG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111102963 83 - 111193037 tcgaactcctgacctcagatgttctgcccacttcggcctcccaaaatgctgggtttacaggagtgagccaccctgcctggcTG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361293 83 +    434444 ttgaattcctgacctcgggtgttctgcccacctcagcttcccaaaatgctgggtttacaggagtgagccaccgtgcctggccA
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66458344 83 +  90373283 tcaaattcctgacctcaggtgttctgcccacctcagcttcccaaaatgctgggtttacaggagtgagccaccgtgcctggccA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508792 83 -   1547936 tcgaattcctgacctcaggtgttctgcccacctcggcttcccaaaatgctgggtttacaggagtgagccaccgtgcctggcTG
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647470 79 -  72162052 tcaaactcctgacctcaggtgatctgcccactttggcctcccaaagtactgggattacaggcatgagccaccacat----ccA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1066204 79 +   1314817 tcaaactcctgacctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggcacgagccaccacat----cca
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6417978 79 -   6597006 tcaaactcctgacctcaggtgatctgcccaccttagcctcccaaagtgctgggattacaggcatgagccaccacat----ctg
i aotNan1.NW_018488791v1       C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79110319  4 -  85426708 I
e otoGar3.GL873538              19657875  0 -  27850971 C
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e dasNov3.JH570393               1734605 28 -   2296528 I
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=93239.000000
s hg38.chr14_GL000009v2_random     32788 17 +    201709 CCTATAGCAGTATTTCT
s panTro5.chr9                  41708759 17 + 116767853 TCTATAGCAGTATTTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054172 17 - 114479721 TCTATAGCAGTATTTCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89817 17 -    416926 CCTATAGCAGTATTTCA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826475 17 + 122973662 GCTATAGCAGTATTTAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103046 17 - 111193037 CCTATAGCAGTATTTAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361376 17 +    434444 CCTATTGCAGTATTTAA
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66458427 17 +  90373283 CCTATTGCAGTATTTAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508875 17 -   1547936 CCTATAGCAGTATTTAA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647549 17 -  72162052 CCTATAGCAGTATTTAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1066283 17 +   1314817 cccATAGCAGTATTTAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6418057 17 -   6597006 CCTATAGCAGTATTTAA
i aotNan1.NW_018488791v1       C 0 C 0
s dasNov3.JH570393               1734633 17 -   2296528 CCTATAAAAATATTTAA
i dasNov3.JH570393             I 28 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79110319  4 -  85426708 I
e otoGar3.GL873538              19657875  0 -  27850971 C
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=433457.000000
s hg38.chr14_GL000009v2_random     32805 76 +    201709 CAGCAGATAATTGTCATTGTGCTAT-AAACTAATTCAAAATTGGA-CTAATGTTCATTATGATTAACAAGTTTTATAG
s panTro5.chr9                  41708776 76 + 116767853 CAGCAAGTAATTGTCATTGTGCTAT-AAACTAATTCAAAATTGGA-CTAATGTTCATTATTATTAACAAGTTTTATAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054189 76 - 114479721 CAGCAAATAATTGTCATTGTGCTAT-AAACTAATTCAAAATTGGA-CTAATGTTCATTATTATTAACAAGTTTTATAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89834 76 -    416926 CAGGAGATAATTGTCATTGTGCTAT-AAACTAATTCAAAATTGGA-CTAATATTCCTTATGATTAACAAGTTTTATAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826492 76 + 122973662 CAGCAGATACTTGTCATTGTGCTAT-AAACTAATTCAAAATTGGA-CTAATATTCCTTATGACTAACAAGTTTTATAC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103063 76 - 111193037 CAGGAGGTAATTGTCATTGTGCTAT-ACACTAATGCAAATTTGGA-CTAATATTCCTTATGATTAACAAGTTTTATAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361393 76 +    434444 CAGCAGGTAATTGTCATTGTGCTAT-AAACTAATTCAAAATTAGA-CTAATATTCTTTATGATTAACAAGTTTTATAC
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66458444 76 +  90373283 CAGCAGGTAATTGTCATTGTGCTAT-AAACTAATGCAAACTTGGA-CTAATATTCCTTATGATTAACAAGTTTTATAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508892 76 -   1547936 CAGGAGGTAATTGTCATTGTGCTAT-AAAGTAATTCAAAATTAGA-CTAATATTCTTTATGATTAACAAGTTTTATAC
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647566 75 -  72162052 CAGGAAATAATTGTCTTTGTACTAT-AAACTAATCCTAAATTTGA-C-TAATATCATTATGATTAACAAATTTTATAC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1066300 75 +   1314817 CAGGAAATAATTGTCATTGTGCTAT-AAATTAATCCTAAATTTGA-C-AATATTCATTACGATTAACAAATTTTATAC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6418074 76 -   6597006 CAGGAAATAATTGTCATTGTGCTAT-AAACTAATCCTAAATTTGA-CTAATATTCATTATGATTAACAAATTTTATAC
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79110323 74 -  85426708 CAGTAGATAATTATCATTTTTCTAC-AAAGCAAATTCTAGTTGGATCTAATGTTC---ATAATTAACACATTTTATAT
i canFam3.chr2                 I 4 C 0
s dasNov3.JH570393               1734650 69 -   2296528 CAGTA-----TTATTGTTTTGCTATAAAACTAATTCCAATTTGGG-CTAATATTC---ATGACTAACAAATTTTATAC
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19657875  0 -  27850971 C
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e cerAty1.NW_012002921v1          407528 1272 -    438202 M
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=87812.000000
s hg38.chr14_GL000009v2_random     32881 10 +    201709 TTTTACCAGG
s panTro5.chr9                  41708852 10 + 116767853 TTTTACCAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054265 10 - 114479721 TTTTACCAGG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89910 10 -    416926 TTTTACCAGG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826568 10 + 122973662 TTTTACCAGG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103139 10 - 111193037 TTTTACCAGG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361469 10 +    434444 TTTTACCAGG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          408800 10 -    438202 TTTTACCAGG
i cerAty1.NW_012002921v1       M 1272 C 0
s chlSab2.chr2                  66458520 10 +  90373283 TTTTACCAGG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508968 10 -   1547936 TTTTACCAGG
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647641 10 -  72162052 TTTTACCAGG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1066375 10 +   1314817 TTTTACCAGG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6418150 10 -   6597006 TTTTACCAGG
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79110397 10 -  85426708 TTTTAGTAGA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1734719 10 -   2296528 TTTTATGAGG
i dasNov3.JH570393             C 0 I 1
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19657875  0 -  27850971 C
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=5500.000000
s hg38.chr14_GL000009v2_random     32891 1 +    201709 G
s panTro5.chr9                  41708862 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054275 1 - 114479721 G
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89920 1 -    416926 G
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826578 1 + 122973662 G
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103149 1 - 111193037 G
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361479 1 +    434444 G
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          408810 1 -    438202 g
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66458530 1 +  90373283 G
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508978 1 -   1547936 g
i manLeu1.NW_012105442v1       C 0 C 0
s canFam3.chr2                  79110407 1 -  85426708 G
i canFam3.chr2                 C 0 C 0
e calJac3.chr1                 130385798 0 - 210400635 C
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6418160 0 -   6597006 C
e otoGar3.GL873538              19657875 0 -  27850971 C
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e dasNov3.JH570393               1734729 1 -   2296528 I
e cebCap1.NW_016107851v1         1066385 0 +   1314817 C
e saiBol1.JH378105              64647651 0 -  72162052 C
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=56849.000000
s hg38.chr14_GL000009v2_random     32892 15 +    201709 ATATTTAGCcctgcc
s panTro5.chr9                  41708863 15 + 116767853 ATATTTAGCCCTGCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054276 15 - 114479721 ATATTTAGCcctgcc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89921 15 -    416926 ATATTTAGCcctgcc
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826579 15 + 122973662 ATATGTAGCCCTGTc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103150 15 - 111193037 ATATTTAGTcctgcc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361480 15 +    434444 ATATATAGCCCTGTc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          408811 15 -    438202 atatttagccctgtc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66458531 15 +  90373283 ATATTTAGTcctccc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508979 15 -   1547936 atatttagccctgtc
i manLeu1.NW_012105442v1       C 0 C 0
s canFam3.chr2                  79110408 13 -  85426708 ATATTCCACTCTG--
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1734730 13 -   2296528 atattcaactttg--
i dasNov3.JH570393             I 1 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6418160  0 -   6597006 C
e otoGar3.GL873538              19657875  0 -  27850971 C
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e cebCap1.NW_016107851v1         1066385  0 +   1314817 C
e saiBol1.JH378105              64647651  0 -  72162052 C
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=926221.000000
s hg38.chr14_GL000009v2_random     32907 136 +    201709 tagtaatcagaaaaatgcaaattaacataa-aataagat-a-tattttgtaaagtcatgctg----at---------attg-----aaaaagtaattcctaccattga-aaatgagagga-aaaaggcattctcata--cactgttggtatatgaaattgg
s panTro5.chr9                  41708878 109 + 116767853 TGGTAATCAGAAAAATGAAAATTAACATAA-AATAACAT-A-TATTTTGTAAAGTCATGCTG----AT---------ATTG-----AAAAAGTAATTCCTACCATTGA-AAATGTGAGGA-AAAAGGCACTC-----------------------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054291 136 - 114479721 tggtaatcagaaaaatgaaaattaacataa-aataacat-a-tattttgtaaagtcatgctg----at---------attg-----aaaaagtaattcctaccattga-aaatgtgagga-aaaaggcactctcata--cactgttggtatatgaaattgg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           89936 137 -    416926 tggtaatcagaaaaatgcaaattaacataa-aataagat-a-tattttgtaaagtcatgctg----at---------attt-----aaaaagtaattactagtgttggcaaatgtgagga-aaaaggcattctcata--cactgttggtatatgaaattgg
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826594 137 + 122973662 tggtaatcagaaaaatgcaagttaacataa-aataagat-a-tattttttaaagtcatgctg----at---------gttt-----ataaagtaattattagtgttggcaaatgtgagga-aaaaggcattctcata--cactgttggtatataaaattgg
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103165 137 - 111193037 tggtaatcagaaaaatgcaaattaacataa-aataagat-a-tatttttaaaagtcatgctg----at---------attt-----aaaaagtaattaccaatgttggcgtatgtgagga-aaaacgcattctcgta--caccgttggtatatgaaattgg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361495 137 +    434444 tggtaatcagaaaaatgtaaattaacatta-aataagat-a-catttttaaaagtcatgctg----at---------attt-----aaaaagtaattactagtgttggcaaatgtgagga-aaaaggcattctcaca--cactgttggtatatgaaattat
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          408826 137 -    438202 tggtaatcagaaaaatgcaaattaacatta-aataagat-a-catttttaaaagtcatgctg----at---------attt-----aaaaagtaattactagtgttggcaaatgtgagga-aaaaggcattctcaca--cactgttggtatatgaaattat
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66458546 137 +  90373283 tggtaatcagaaaaatgcaaattaacataa-aataagat-a-tattttttaaagtcatgctg----at---------attt-----aaaaagtaattactagtgttggcaaatgtgagga-aaaaggcattctcaca--cactgttggtgtatgaaattat
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1508994 137 -   1547936 tggtaatcagaaaaatgcaaattaacataa-aataagat-a-tatttttaaaagtcatgctg----at---------attt-----aaaaagtaattactagtgttggcaaatgtgagga-aaaaggcattctcaca--cactgttggtatatgaaattat
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647651 132 -  72162052 --gtaatcagagaaatgcaaattaacataa-aataagat-a-tattttttaaagtca---ca----at---------tttt-----aaaaaggaattactagtgttggcaaatgcgaaga-aaaaggcattcttata--cagtgtatgtatatgaaattgg
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1066385 132 +   1314817 --gtaatcagagaaatgcaaattaacataa-aataagat-a-tattttttaaagtca---tg----at---------tttt-----aaaaagtaattactaatgttggcaaatgtaaaga-aaaaggcattctcata--cactgtttgtatatgaaattgg
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6418160 132 -   6597006 --gtaatcagagaaatgaaaattaacataa-aataagat-a-tattttttaaagtca---tg----at---------tttt-----aaaaagtaattactagtgttggcaaatgtgaaga-aaaaggcattctcata--cactgtatgtatatgaaattgg
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19657875 134 -  27850971 tagtaatcagacaagtgcaagttaac-----aacaagataa-cattttttccaatcagactg----at---------attttactataaaaataataatcagtgtgg--aaatggg------aaaggcattcttgtattctctgctggtgaatgaaattga
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79110421 143 -  85426708 --GGTGttagaaaaatgcgaagaccaacaa-gataccat---ttttttttgcaggcatagtg----atcaatatttaatta-----aaaaaataataacctaggttagcaaatgtgagga-aaaagtcattctcata--cactgttgttaaatgaaattgg
i canFam3.chr2                 C 0 I 198
s dasNov3.JH570393               1734743 146 -   2296528 --gtaatcagaatagtgcaaattaacaaagcaatgagat-accattttttataatcttattgagaaat---------atttcatt-aaaaaataataaccagggttggaaaatgagaggagaaaagacattctcata--ccctattggtcgataaaattgg
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798   0 - 210400635 C
e rheMac8.chr15                   520842   5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=1266560.000000
s hg38.chr14_GL000009v2_random     33043 159 +    201709 taaattatttctgaagggtaacttagtgc----tgtttatcaaaatttcaaataacctgacatccctttaactcaacaactccacttctgggactagatttcacaggaaaACATA-ACTTGTGTAAACATA----CACACACTTATTAAGGGCATTAATTATATATTA
s panTro5.chr9                  41708987 154 + 116767853 -----TATTTCtgaagggtaacttagtgc----tgtttatcaaaatttcaaataacctgacatccctttaactcaacaactccacttctgggaCTAGATTTCACAGGAAAACATA-ACTTGTGTAAACATA----CACACACTTATTAAGGGCATTAATTATATATTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054427 159 - 114479721 taaattatttctgaagggtaacttagtgc----tgtttatcaaaatttcaaataacctgacatccctttaactcaacaactccacttctgggactagatttcacaggaaaacata-ACTTGTGTAAACATA----CACACACTTATTAAGGGCATTAATTATATATTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90073 158 -    416926 taaattatttctgaagggtaacttagtgc----tgtgtatcaaaatttcaaat-acctgacatccctttaactcaacaactccacttctgggactagatttcacaggaaaacata-ACTTGTGTAAACATA----CACACACTTATTAAGGGCATTAattatatatta
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826731 159 + 122973662 taaattatttctgaagggtaacttagtgc----tgtgtgtcaaaatttcagataacctgacatccctttaactcaccaacttcacttctgggaCTAGATTTCACAGGAAAATATA-ACTTGTGTAAACATA----CACATACTTATTAAGGGCATTAATTATATAATA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103302 159 - 111193037 taaattatttccgaagagcaacttagtgc----tttgtatcaaaaattcaaataacccgacatccctttaactcaacaactccatttctgggaCTAGATTTCACGGGAAAACATA-ACTTGTGTAAACATA----CACACACTTATTAAGGAtattaattatatatta
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361632 159 +    434444 taaattatttctgaagggtgacttagtgc----tgtgtatcaaaatttcaaataacctgacatccctttaactcgacaacttcacttctggaactAGATTTCACAGGAAAACATA-ACTTGTGTAAACATA----TACACATTTATTAAGGACATTAATTATAAATTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          408963 159 -    438202 taaattatttctgaagggtgacttagtgc----tgtgtatcaaaatttcaaataacctgacatccctttaactcgacaacttcacttctggaactagatttcacaggaaaacata-acttgtataaacata----tacacaTTTATTAAGGACATTAATTATATATTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66458683 159 +  90373283 taaattatttctgaagggtaacttagtgc----tgtgtatcaaaatttcaaataacctgacatccctttaactcaacaactccatttctgggaCTAGATTTCACAGGAAAACATA-ACTTGTGTAAACATA----TACACATTTATTAAGGACATTAATTATATATTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509131 159 -   1547936 taaattatttctgaagggtgacttagtgc----tgtgtatcaaaatttcaaataacctgacatccctttaactcgacaacttcacttctggaactagatttcacaggaaaacata-acttgtataaacata----tacacaTTTATTAAGGACATTAATTATATATTA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647783 163 -  72162052 taaattgtttctgaagggtaacttagtgc----tgtgtatcagaatttcaaataatctgacatccctttaatgtgacagcttcaattctgggaCTAGATTGTACAGGAAAATATA-ACTTATGTAAACATACACACACACACTTATTAAGGACGTTAATTATATGTTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1066517 163 +   1314817 taaattgtttctgacgggtagcttagtgc----tgtgtatcagaatttcaaataacctgacatccctttaatgtgacaacttcacttttgggaCTAGATTGTACAGGAAAACATA-ACTTGTGTAAACATACACACACACACTTATTAAGGACGTTAATTATATGTTA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6418292 163 -   6597006 taaattgtttctgaagggtaacttagtgc----tgtgtatcagaatttcaaataacctgacatccctttaatgtgacaacttcacttctgggactagattgtacaggaaaacata-atttgtgtaaacatacatgcacacacttattAAGGACATTAATTATATGTTA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19658009 150 -  27850971 taagtccttattgaagggttatttagtaagtagcatgtatcaaaatttcaaata---tatcattctttttatt----agcttcacttctgggactaggtcctactggaaaGCACA-ACTTATATTAACACA----CA------TGTTAAGGACATTAATTATATATTA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79110762 160 -  85426708 caaatcctttctgaagggcaatgtagcag----tgcatttcaaaatttcaaata---tgctgtccctttatcccaacagtttcattgccaggagtagatcctagaggaaaACATG-ACTTGTGTCAACACTTAGACACTCACATTTTAAGCAAATTTATtatatatta
i canFam3.chr2                 I 198 I 16966
s dasNov3.JH570393               1734889 156 -   2296528 taagtcctttttgaaggaaaatttaatag----tatgtgtcagaaatttaagca---tgtcatccttttaacccaacaac-----ttctgggactagatcctacagaaaAACATGTACTTGTGCAAACCCACAAACAAACACACATTAAGtatattatatatgtgtac
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798   0 - 210400635 C
e rheMac8.chr15                   520842   5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=43092.000000
s hg38.chr14_GL000009v2_random     33202 6 +    201709 CACATA
s panTro5.chr9                  41709141 6 + 116767853 CACATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054586 6 - 114479721 CACATA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90231 6 -    416926 cacata
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826890 6 + 122973662 CACATG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103461 6 - 111193037 cacata
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361791 6 +    434444 CACATA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          409122 6 -    438202 CACATA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66458842 6 +  90373283 CACATA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509290 6 -   1547936 CACATA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647946 6 -  72162052 TACATA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1066680 6 +   1314817 TGTATA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6418455 6 -   6597006 TACATA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19658159 6 -  27850971 TACATG
i otoGar3.GL873538             C 0 I 10701
s dasNov3.JH570393               1735045 6 -   2296528 tatatg
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798 0 - 210400635 C
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79110922 16966 -  85426708 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=94899.000000
s hg38.chr14_GL000009v2_random     33208 19 +    201709 ATGAACAATAGCTTAAT-AA
s panTro5.chr9                  41709147 19 + 116767853 ATGAACAATAGCTTAAT-AA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054592 19 - 114479721 ATGAACAATAGCTTAAT-AA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90237 18 -    416926 atgaacaataggttaat--a
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826896 19 + 122973662 TTGAAAAATAGGCCAAT-AA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103467 19 - 111193037 atgaacaataggttaat-aa
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361797 19 +    434444 ATGAACAGTAGGCCAAT-AA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          409128 19 -    438202 ATGAACAGTAGGCCAAT-AA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66458848 19 +  90373283 ATGAACAATAGGCCAAT-AA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509296 19 -   1547936 ATGAACAGTAGGCCAAT-AA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647952 20 -  72162052 ATGAACAATAGGCCAATAAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1066686 19 +   1314817 ATGAACAATAGGCCAAT-AA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6418461 19 -   6597006 ATGAACAATAGGCCAAT-AA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19668866 19 -  27850971 CCAAAAGAGAGTTCATA-AT
i otoGar3.GL873538             I 10701 C 0
s dasNov3.JH570393               1735051 14 -   2296528 -----gtatatattgtt-aa
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79110922 16966 -  85426708 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=89220.000000
s hg38.chr14_GL000009v2_random     33227 16 +    201709 --ATATATAAAATATATG
s panTro5.chr9                  41709166 16 + 116767853 --ACATATAAAATATATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054611 11 - 114479721 --ACAT-----ATATATG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90255 16 -    416926 --atatataaaatatatG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826915 16 + 122973662 --CTATATAAAATATATT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103486 16 - 111193037 --atatataaaatctatg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361816 16 +    434444 --ATATATAAAATATATG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          409147 16 -    438202 --ATATATAAAATATATG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66458867 16 +  90373283 --ATATATAAAATATATG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509315 16 -   1547936 --ATATATAAAATATATG
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647972 13 -  72162052 --ATATGTTACATGA---
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1066705 16 +   1314817 --ATATATAAAATAAATG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6418480 16 -   6597006 --ATATATAAAATATATG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19668885 16 -  27850971 --GCTTATAAAATATATA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79127888 16 -  85426708 --atttataaaatttata
i canFam3.chr2                 I 16966 C 0
s dasNov3.JH570393               1735065 16 -   2296528 ggatatattatattta--
i dasNov3.JH570393             C 0 I 30882
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=3991.000000
s hg38.chr14_GL000009v2_random     33243 1 +    201709 T
s panTro5.chr9                  41709182 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054622 1 - 114479721 T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90271 1 -    416926 T
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826931 1 + 122973662 T
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103502 1 - 111193037 t
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361832 1 +    434444 T
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          409163 1 -    438202 T
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66458883 1 +  90373283 T
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509331 1 -   1547936 T
i manLeu1.NW_012105442v1       C 0 C 0
s cebCap1.NW_016107851v1         1066721 1 +   1314817 T
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6418496 1 -   6597006 T
i aotNan1.NW_018488791v1       C 0 I 6894
s otoGar3.GL873538              19668901 1 -  27850971 A
i otoGar3.GL873538             C 0 I 1
s canFam3.chr2                  79127904 1 -  85426708 a
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1765963 1 -   2296528 T
i dasNov3.JH570393             I 30882 C 0
e calJac3.chr1                 130385798 0 - 210400635 C
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e saiBol1.JH378105              64647985 0 -  72162052 C
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=16240.000000
s hg38.chr14_GL000009v2_random     33244 2 +    201709 AA
s panTro5.chr9                  41709183 2 + 116767853 AA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054623 2 - 114479721 AA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90272 2 -    416926 AA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826932 2 + 122973662 CA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103503 2 - 111193037 aa
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361833 2 +    434444 AA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          409164 2 -    438202 AA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66458884 2 +  90373283 AA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509332 2 -   1547936 AA
i manLeu1.NW_012105442v1       C 0 C 0
s cebCap1.NW_016107851v1         1066722 2 +   1314817 AA
i cebCap1.NW_016107851v1       C 0 I 1022
s aotNan1.NW_018488791v1         6425391 2 -   6597006 AA
i aotNan1.NW_018488791v1       I 6894 C 0
s otoGar3.GL873538              19668903 2 -  27850971 AA
i otoGar3.GL873538             I 1 I 1
s canFam3.chr2                  79127906 2 -  85426708 aa
i canFam3.chr2                 I 1 I 1
s dasNov3.JH570393               1765964 2 -   2296528 AA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798 0 - 210400635 C
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e saiBol1.JH378105              64647985 0 -  72162052 C
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=25601.000000
s hg38.chr14_GL000009v2_random     33246 5 +    201709 TAAGA
s panTro5.chr9                  41709185 5 + 116767853 TAAGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054625 5 - 114479721 TAAGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90274 5 -    416926 TAAGA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826934 5 + 122973662 TAACA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103505 5 - 111193037 taaCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361835 5 +    434444 TAGCA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          409166 5 -    438202 TAGCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66458886 5 +  90373283 TAGCA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509334 5 -   1547936 TAGCA
i manLeu1.NW_012105442v1       C 0 C 0
s saiBol1.JH378105              64647985 5 -  72162052 TAAGA
i saiBol1.JH378105             C 0 I 7303
s aotNan1.NW_018488791v1         6425393 5 -   6597006 TAACA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19668906 5 -  27850971 CAAGA
i otoGar3.GL873538             I 1 C 0
s canFam3.chr2                  79127909 5 -  85426708 CAATA
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1765966 5 -   2296528 CAAGA
i dasNov3.JH570393             C 0 I 2
e calJac3.chr1                 130385798 0 - 210400635 C
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e cebCap1.NW_016107851v1         1066724 1022 +   1314817 I
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=197189.000000
s hg38.chr14_GL000009v2_random     33251 43 +    201709 AGGTGAACTGGAAGTA----TT----AAGAAAGAATTAGAAAAAGTGTGG-G-
s panTro5.chr9                  41709190 43 + 116767853 AGGTGAATTGGAAGTA----TT----AAGAAAGAATTAGAAAAAGTGTGG-G-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054630 43 - 114479721 AGGTGAATTGGAAGTA----TT----AAGAAAGAATTAGAAAAAGTGTGG-G-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90279 43 -    416926 AGGTGAATTGAAAGTA----TT----AAGAAAGAATTATAAAAAGTGTGG-G-
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826939 40 + 122973662 AGGTG--TTGAAAATA----TT----AAGAAAGAAATGTAAAAAGTGTGG---
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103510 43 - 111193037 AGGTGAATTGAAAGTA----CT----TAGAAAGTAATATAAAAAATATGGG--
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361840 42 +    434444 AGGTGAATTGAAAGTA----TT----AAGAAAGAAATATAAAAAGTATGG---
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          409171 42 -    438202 AGGTGAATTGAAAGTA----TT----AAGAAAGAAATATAAAAAGTATGG---
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66458891 42 +  90373283 AAGTGAATTGAAAGTA----TT----AAGAAAGAAATATAAAAAGTATGG---
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509339 42 -   1547936 AGGTGAATTGAAAGTA----TT----AAGAAAGAAATATAAAAAGTATGG---
i manLeu1.NW_012105442v1       C 0 C 0
s aotNan1.NW_018488791v1         6425398 46 -   6597006 AGGTGAATTGAAAGTA----TTGCTCAAGAAAGAAATAGAAAAAGTGTGG---
i aotNan1.NW_018488791v1       C 0 I 1
s otoGar3.GL873538              19668911 46 -  27850971 AGAGAATTTGAAAGTGATACCT----AAAAAAGAAACATAGAAAGTTGAG---
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79127914 41 -  85426708 ----AGGTTGAGAATA----TTGCA-AAAGAAGAACCATAAAAAGTATGG---
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1765973 46 -   2296528 GGGTATGTTGAAAGTA----TTACA-AAAGAAAAAATATAGGAAGTTTGG--A
i dasNov3.JH570393             I 2 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e colAng1.NW_012121088v1           23809 1095 +    168452 M
e cebCap1.NW_016107851v1         1066724 1022 +   1314817 I
e saiBol1.JH378105              64647990 7303 -  72162052 I
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=415654.000000
s hg38.chr14_GL000009v2_random     33294 71 +    201709 GTAACAGATGTTAGACTCTTTAGCCTAGTTTTAGATGACAATAATCTGCAGATATAGTTTGTGTGAGAGA-------------T-------------
s panTro5.chr9                  41709233 71 + 116767853 GTAACAGATGTTAGACTCTTTAGCCTAGTTTTAGATGACAATCATCTGCAGATATAGTTTGTGTGAGATA-------------C-------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054673 71 - 114479721 GTAACAGATGTTAGACTCTTTAGCCTAGTTTTAGATGACAATCATCTGCAGATATAGTTTGTGTGAGATA-------------C-------------
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90322 71 -    416926 GAAACAGATGTTAGACTCTTTAGCCTAGTTTTGGATGACAGTCATCTGCAGATATAGTTTGTGTGAGAGA-------------C-------------
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40826979 79 + 122973662 -----AGATGTTAGACTCTTTAACCTAGTTTTGGGTTACAGTCATCTGCAGATATAGTTTGTGTGAGAGACATCTGAAGGTGCC-------------
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103553 71 - 111193037 GTAACAGATGTTAGACTCTTTAGCCTAGTTTTGGCTGACAGTCATCTGCAGATATAGTTTGTGTGAGGGA-------------C-------------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361882 64 +    434444 -----ATATGTTAGACTCTTTAGCCTAGTTTTGGATTACAGTAATCTGCAG--ATAGTTTGTGTGAAAGA-------------C-------------
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          409213 64 -    438202 -----ATATGTTAGACTCTTTAGCCTAGTTTTGGATTACAGTAATCTGCAG--ATAGTTTGTGTGAAAGA-------------C-------------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66458933 64 +  90373283 -----ATATGTTAGACTCTTTAGCCTAGTTTTGGATTACAGTAATCTGCAG--ATAGTTTGCGTGAAAGA-------------C-------------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509381 64 -   1547936 -----ATATGTTAGACTCTTTAGCCTAGTTTTGGATTACAGTAATCTGCAG--ATAGTTTGTGTGAAAGA-------------C-------------
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           24904 71 +    168452 GTAACAGATGTTAGACTCTTTAGCCTAGTTTTGGCTGACAGTCATCTGCAGATAAAGTTTGTGTGAGGGA-------------C-------------
i colAng1.NW_012121088v1       M 1095 C 0
s aotNan1.NW_018488791v1         6425445 71 -   6597006 GTAACAGATGTTAGCCTCTTTAGCCTAGTCTTGGATTACAGTAATCTGCAGATACATTTTGTGTGAAAGA-------------C-------------
i aotNan1.NW_018488791v1       I 1 I 20
s otoGar3.GL873538              19668957 68 -  27850971 GTAACAGGTGTTACAC---TTAGCCTAGTTTTGGATTATAGTAATATACAGATAGGTGTGGTATGAAAGA-------------C-------------
i otoGar3.GL873538             C 0 I 13
s canFam3.chr2                  79127956 71 -  85426708 GCAATAAATATTAGACTCCCTAGTCTACTGCTGGATCACAGTAATCTGCAGGTGTATGTTGTGTAAACAA-------------C-------------
i canFam3.chr2                 I 1 I 13
s dasNov3.JH570393               1766019 78 -   2296528 GCAACAGATATTAGGCCATCTTGTCTCATGTTGGATTATAGTAATCAACAG------GTTATGGAAAAGA-------------CATATGAAAGTGCT
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cebCap1.NW_016107851v1         1066724 1022 +   1314817 I
e saiBol1.JH378105              64647990 7303 -  72162052 I
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=42365.000000
s hg38.chr14_GL000009v2_random     33365 11 +    201709 ATCTTACTCTG
s panTro5.chr9                  41709304 11 + 116767853 ATCTTACTCTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054744 11 - 114479721 ATCTTACTCTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90393 11 -    416926 ATCTTACTCTG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40827058 11 + 122973662 ATCTTACACTG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103624 11 - 111193037 AGCTGAAGGTT
i macFas5.chr13                C 0 I 13
s macNem1.NW_012012823v1          361946 11 +    434444 ATCTGAAGGTG
i macNem1.NW_012012823v1       C 0 I 17
s cerAty1.NW_012002921v1          409277 11 -    438202 ATCTGAAGGTG
i cerAty1.NW_012002921v1       C 0 I 13
s chlSab2.chr2                  66458997 11 +  90373283 ATGTGAAGGTG
i chlSab2.chr2                 C 0 I 13
s manLeu1.NW_012105442v1         1509445 11 -   1547936 ATCTGAAGGTG
i manLeu1.NW_012105442v1       C 0 I 13
s colAng1.NW_012121088v1           24975 11 +    168452 AGCTGAAGGTG
i colAng1.NW_012121088v1       C 0 I 13
s cebCap1.NW_016107851v1         1067746 11 +   1314817 ATCTTACACTG
i cebCap1.NW_016107851v1       I 1022 C 0
s aotNan1.NW_018488791v1         6425536  9 -   6597006 ATCTTACAC--
i aotNan1.NW_018488791v1       I 20 C 0
s otoGar3.GL873538              19669038 11 -  27850971 ATCTTACATTG
i otoGar3.GL873538             I 13 C 0
s canFam3.chr2                  79128040 11 -  85426708 GTCTTACACTG
i canFam3.chr2                 I 13 C 0
s dasNov3.JH570393               1766097 11 -   2296528 TTCTTATACTG
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e saiBol1.JH378105              64647990 7303 -  72162052 I
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=190887.000000
s hg38.chr14_GL000009v2_random     33376 30 +    201709 TAAATC-------------------ATTTGGAGAGACACCTGCA--------------ATATT
s panTro5.chr9                  41709315 30 + 116767853 TAAATC-------------------ATTTGAAGAGACACCTGCA--------------ATATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054755 30 - 114479721 TAAATC-------------------ATTTGAAGAGACACCTGCA--------------ATATT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90404 30 -    416926 TAAATC-------------------ATTTGGAGAAACACCTGCA--------------ATATT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40827069 30 + 122973662 TCAATC-------------------ATTTGGAGAGATACTTGCA--------------ATATT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103648 30 - 111193037 TCAATC-------------------ATTTGGAGAGGTACCTGCA--------------ATATT
i macFas5.chr13                I 13 C 0
s cerAty1.NW_012002921v1          409301 30 -    438202 TCAGTC-------------------ATTTGGAGAGATACCTGCA--------------ATATT
i cerAty1.NW_012002921v1       I 13 C 0
s chlSab2.chr2                  66459021 30 +  90373283 TCAATC-------------------ATTTGGAGAGATACCTGCA--------------ATATT
i chlSab2.chr2                 I 13 C 0
s manLeu1.NW_012105442v1         1509469 30 -   1547936 TCAGTC-------------------ATTTGGAGAGATACCTGCA--------------ATATT
i manLeu1.NW_012105442v1       I 13 C 0
s colAng1.NW_012121088v1           24999 30 +    168452 TCAATC-------------------ATTTGGAGAGGTACCTGCA--------------ATATT
i colAng1.NW_012121088v1       I 13 C 0
s cebCap1.NW_016107851v1         1067757 30 +   1314817 TGAATC-------------------ATTTGGAGGGATACATGCA--------------ATATT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6425545 30 -   6597006 TAAATC-------------------ATTTGGAGGGATACCTGCA--------------ATATT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19669049 30 -  27850971 TAAATC-------------------ATTTTTAGGGATACCTGAA--------------ATAGT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79128051 30 -  85426708 TAGATT-------------------ATTTTTAGAGGTACCTTTG--------------ATGTT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1766108 63 -   2296528 TAAATCAGTTTTGGAGTATATTAATATTTAGAGGTATATTTATATTTAGAGTATATTCATATT
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e saiBol1.JH378105              64647990 7303 -  72162052 I
e macNem1.NW_012012823v1          361957 17 +    434444 I
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=51874.000000
s hg38.chr14_GL000009v2_random     33406  9 +    201709 TCATAGAGA-------------
s panTro5.chr9                  41709345  9 + 116767853 TCATAGAGA-------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054785  9 - 114479721 TCATAGAGA-------------
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90434  9 -    416926 TCATAAAGA-------------
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40827099  9 + 122973662 TCACAAAGA-------------
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103678  9 - 111193037 TCATAAAGA-------------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361974  9 +    434444 TCATAAAGA-------------
i macNem1.NW_012012823v1       I 17 C 0
s cerAty1.NW_012002921v1          409331  9 -    438202 TCATAAAGA-------------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66459051  9 +  90373283 TCATAAAGA-------------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509499  9 -   1547936 TCATAAAGA-------------
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25029  9 +    168452 TCATAAAGA-------------
i colAng1.NW_012121088v1       C 0 C 0
s cebCap1.NW_016107851v1         1067787  9 +   1314817 TCATTAAGA-------------
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6425575  9 -   6597006 TCATTAAGA-------------
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19669079  6 -  27850971 ---TAAAGA-------------
i otoGar3.GL873538             C 0 I 3
s canFam3.chr2                  79128081  8 -  85426708 TTATGAAG--------------
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1766171 19 -   2296528 ---TAGAGGTAGGTCATATTTA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e saiBol1.JH378105              64647990 7303 -  72162052 I
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=1585539.000000
s hg38.chr14_GL000009v2_random     33415 191 +    201709 ---------TGAAAATTTATTTCTAGTGAACTTATACGCTTGTCAATAAATAGTAACTT-TAAAAATTTAGTTGATTG-TAAATGACCTTTTCTAATCAGGTAGTAATTATGACTGTGTGATTTGAAAAGGTAATTTTGAACTTCTAACTATACTGAATTATTTCCAGTATCTTTT-TGTATAATACATACTAGAGTGACTAG
s panTro5.chr9                  41709354 191 + 116767853 ---------TGAAAATTTATTTCTAGTGAACTTATATGCTTGTCAATAAATAGTAACTT-TAAAAATTTAGTTGATTG-TAAATGACCTTTTCTAATCAGGTAGTAATTATGACTGTGTGATTTGAAAAGGTAATTTTGAACTTCTAACTATACTGAATTATTTCCAGTATCCTTT-TTTATAATACATACTAGAGTGACTAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054794 191 - 114479721 ---------TGAAAATTTATTTCTAGTGAACTTATATGCTTGTCAATAAATAGTAACTT-TAAAAATTTAGTTGATTG-TAAATGACCTTTTCTAATCAGGTAGTAATTATGACTGTGTGATTTGAAAAGGTAATTTTGAACTTCTAACTATACTGAATTATTTCCAGTATCCTTT-TTTATAATACATACTAGAGTGACTAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90443 190 -    416926 ---------TGAAAATTTATTTCTAGTGAACTTATACGCTTGTCAATAAATAGTAACTT-TAAAAATTTAGTTGATTG-TAAATGATCTTTTCTAATTAGGGAGTAATTATGACTGTGTGATTTAAAAAGGTAATTTTGAACTG-TAACTTTACTGAATTATCTCCGGTATCCTTT-TTTATAATATATATTAGAGTGACTAG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40827108 191 + 122973662 ---------TTGAAATTTATTTCTGGTGAACTTATACACTTGTCAATAAATAGTAACTT-TAAAAAATTAGTTAATTG-TAAATGATCTTTTTAAATTAGGGAGTGATTATGACTGTCTGATTCAAAAAGGTAATTTTGAACTTGTAACTTTACTGAATAATCTCCAGTATCCTTT-TTTATAATATATACTAGAGTGACTAG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103687 191 - 111193037 ---------TGAAACTTTATTTCTAGTGAACTTAGACACTTGTCAATAAATAGTAACTT-TAAAAATGTAGTTGATCG-TAAACAATCTTTTCTAATAATGGAGTAATTATGATTGTGTGATTTAAAAAGGTAATTTTGAACATGTAACTTTACTGAATAATCTCCAGTATCCTTT-TTTATAATATATACTAGAGTGACTAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          361983 191 +    434444 ---------TTAAAATTTATTTCTGGTGAACTTATACACTTGTCAATAAATAGTAACTT-TAAAAAATTAGTTAATTG-TCAATGATCTTTTTAAATTAGGGAGTAATTATGACTGTGTGATTTAAAAAGGTAATTTTGAACTTGTAAGTTTACTGAATAATCTCCAGTATCCTTT-TTTATAATATATACTAGAGGGACTAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          409340 191 -    438202 ---------TTAAAATTTATTTCTGGTGAACTTATACACTTGCCAATAAATAGTAACTT-TAAAAAATTAGTTAATTG-TCAATGATCTTTTTAAATTAGGGAGTAATTATGACTGTGTGATTTAAAAAGGTAATTTTGAACATGTAACTTTACTGAATAATCTCCAGTATCCTTT-TTTATAATATATACTAGAGGGACTAG
i cerAty1.NW_012002921v1       C 0 I 1158
s chlSab2.chr2                  66459060 191 +  90373283 ---------TGAAAATTTATTTCTAGTGAACTTATACACTTGTCAATAAATAGTAACTT-TAAAAAATTAGTTAATTG-TAAATGATCTTTTTAAATTAGGGAGTAATTATGACTGTGTGATTTAAAAAGGTAATTTTGAACTTGTAAATTTACTGAATAATCTCTAGTATCCTTT-TTTATAATATATACTAGAGGGACTAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509508 191 -   1547936 ---------TGAAACTTTATTTCTAGTGAACTTAGACACTTGTCAATAAATAGTAACTT-TAAAAAATTAGTTAATTG-TCAATGATCTTTTTAAATTAGGGAGTAATTATGACTGTGTGATTTAAAAAGGTAATTTTGAACATGTAACTTTACTGAATAATCTCCAGTATCCTTT-TTTATAAAATATACTAGAGGGACTAG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25038 191 +    168452 ---------TGAAAATTTATTTCTAGTGAACTTATACACTTGTCAATAAATAGTAACTT-TAAAAATGTAATTGATCG-TAAACGATCTTTTCTAATTAGGGAGTAATTATGACTATGTGATTTAAAAAGGTAATTTTGAACTTGTAAGTTTACTGAATAATCTCCAGTATCCTTT-TTTATAATATATACTAGAGGGACTAG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64655293 188 -  72162052 ---------TGAAAATTTATTTCTATTGAACTTACACACTTGTCAATAAATAGTAACTT--AAAAATT--GTTAATTG-TAAATGATCTTTTTTAATTGGGGAGTAATTATGACTGTGTGATTTAAAAAGGTAATTTTCAACTTGTAACTTTACTGAATAATCTCCAGTATCCTTT-TTCATAAAATATACTAGAGTGACTAG
i saiBol1.JH378105             I 7303 C 0
s cebCap1.NW_016107851v1         1067796 188 +   1314817 ---------TGAAAATTTATTTCTAGTGAACTTACACACTTGTCAATAAATAGTAACTT--AAAAATT--GTTAATTG-TAAATTATCTTTTTTAATTGGGGAGTAATTATGACTGTGTGATTTAAAACGGTAATTTTCAACTTGTAACTTTCCTGAATAATGCCCAGTATCCTTT-TTTATAAAATATGCTAGAGTGACTAG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6425584 189 -   6597006 ---------TGAAAATTTATTTCTAATGAACTTATACACTTGTCAACAAATAGTAACTT-AAAAAATT--GTTGATTG-TAAATGATCTTTTTTAATTGGGGAGTAATTATGACTGTGTGATTTAAAAAGGTAATTTTCAACTTCTAACTTTACTGAATAATCTCCAGTATCCTTT-TTTATAAAATATACTAGAGTGACTAG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19669088 184 -  27850971 ---------TGAAAATTTATTTCTAGAGAATTTGTAAACTTGTCAATAAATGGCATCTTCTTTTTAACTAGTTAACTC-TAAACACTATATCCAAATTGAGGTATAATTATGACTATGCGG-GAAAAAGTGTACTTTTCAACTTA-------ACTGAATAATTTCTAGGATTATCC-TTTTCCATGTTTACAGGAGTTACTAG
i otoGar3.GL873538             I 3 C 0
s canFam3.chr2                  79128089 190 -  85426708 ---------TAAAAATTTATTTCTAGTGAATTTATAAAGTTGTTGATAAACAGTAACTT--CTCTTTTTAGTTAGTAACTAAATTATCTATCCTATTTGAAGAGTAATTATGACTATGTGG-GGAAAATGGTAATCTTCAACTC-TAACTTTCCTGAATAATTTCAGAATTCCTTTCCTTACAACAACTACCAGAGTTATTAC
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1766190 188 -   2296528 TGAGCTCCTTAAAATTTTATTTCTAGTTAATTTATAAAT------GTAAACACCATCTT--CTCTTTTTAATTACTT--TAAATTATTTGTCCTAATGGAGGAGTAATTATTGCTATTTGG-AAATAAGGGTAATTTT---CCCCTAACTTTACTGCATGATATCAAAATTCATTT-CCCACAATATTTACCAGTGTTATTAC
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798   0 - 210400635 C
e rheMac8.chr15                   520842   5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=371859.000000
s hg38.chr14_GL000009v2_random     33606 47 +    201709 TAATAAAAACT------T------TAGCAGAATATTCTTTCCTTACTAATTTTCAAGTA
s panTro5.chr9                  41709545 47 + 116767853 TAATAAAAACT------T------TAGCAGAATATTCTTTCCTTACTACTTTTCAAGTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96054985 47 - 114479721 TAATAAAAACT------G------TAGCAGAATATTCTTTCCTTACTACTTTTCAAGTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90633 47 -    416926 TAACAAAAACT------T------TAGCAGAATATTCTTTCCTTACTACTTTTCAAGTA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40827299 47 + 122973662 GAACAGAAACT------T------TAGCAGAATATTCTTTCCTCACTACTTTTCAAGTA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103878 47 - 111193037 TAACAGAAACT------A------TAGCGGAATATCCTTTCCTTACTACTTTTCAAGTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          362174 47 +    434444 AAACACAAACT------T------TAGCAGAATATTCTTTCCTTACTACTTTTCAAGTA
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66459251 47 +  90373283 GAACACAAACT------T------TAGCAGAATATTCTTTCCTTACTACTTTTCAAGTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509699 47 -   1547936 GAACACAAACT------T------TAGCAGAATATTCTTTCCTTACTACTTTTCAAGTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25229 47 +    168452 GAACACAAACT------T------TAGCAGAATATTCTTTCCTTACTACTTTTCAAGTA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64655481 47 -  72162052 TAACAGAAACT------T------TAGCAGAATATTCTTTCCTTACTACTTTTCAAGTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1067984 47 +   1314817 TAACAGAAACT------T------TAGCAGAATATTCTTTCCTTACTACTTTTCAAGTA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6425773 47 -   6597006 TAACAGAAACT------T------TAGCAGAATATTCTTTCCTTATTACTTTTCAAGTA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19669272 53 -  27850971 TAACAGAAACTTATGAAT------TAGCAGAATGTTCTTTTTTCAGTATTTTTGTAGTA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79128279 53 -  85426708 TGACTAAAAGT------TACTAAATGGTATAATGCTTTCTCATTCTTTCTTTTCAACTG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1766378 53 -   2296528 TAACAAAAATC------TACCAATTAGCTGGATATCCTTTTATTGCTAAACTTCAAGTA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=430052.000000
s hg38.chr14_GL000009v2_random     33653 57 +    201709 TATG------------CATTCGTTTGAAGATGTTGAAGTGAGAAATTAAATATCTGAGAACTACAAAGG
s panTro5.chr9                  41709592 57 + 116767853 TATG------------CATTAGTTTGAAGATGTTGAAGTGAGAAATTAAATATCTGAGAACTACAAAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055032 57 - 114479721 TATG------------CATTAGTTTGAAGATGTTGAAGTGAGAAATTAAATATCTGAGAACTACAAAGG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90680 57 -    416926 TATG------------CATTCTTTTGAAGATGTTGAAGTGAGAAATTAAATATCTGAGAACTGCAAAGG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40827346 57 + 122973662 TATG------------CATTCTTTTGAAGATGTTGAAGTGAGAAATTAAATATCTGAAAATTACAAAGG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103925 57 - 111193037 TATG------------CATTCTTTGGAAGATGTTGAAGTGAGAAATTAAATATCTGAGAGCTGCAAAGG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          362221 57 +    434444 TATG------------CATTCTTTTGAAGATGTTGAAGTGAGACATTAAATATCTGAGAACTAGAAAGG
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66459298 57 +  90373283 TATG------------CATTCTTTTGAAGATGTTGAACTGAGAAATTAAATATCTGAGAACTAGAAAGG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509746 57 -   1547936 TATG------------CATTCTTTTGAAGATGTTGAAGTGAGAAATTAAATATCTGAGAGCTGCAAAGG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25276 57 +    168452 TATG------------CATTCTTTTGAAGATGCTGAAGTTAGAAATTAAATATCTGAGAGCTGCAAAGG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64655528 57 -  72162052 TATG------------CATTCTTTTGAAGATGTTGAAGTGAGAAATTAAATATCTGAGAACTACAGAGG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068031 57 +   1314817 TATG------------CATTCTTTTGATGATGTTGAAGTGAGAAATTAAATATCTGAGAACTGCAGAGG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6425820 57 -   6597006 TATG------------CATTCTTTTGAAGACATTGAAGTGAGAAATTAAATATCTGAGAACTAGAGAGG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19669325 57 -  27850971 TCTA------------GGTCCTTTGAAGGAGATTGAAGTAAGAAATTAAAAACCTAAGAAGTAGGAAGG
i otoGar3.GL873538             C 0 I 502
s canFam3.chr2                  79128332 69 -  85426708 TATATATATCTATGTCTATCCTTTGGAAGAGATTGAAGTGAGAAATTAAAAACATGAGCCCTAGAAAGG
i canFam3.chr2                 C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1766431  0 -   2296528 C
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=501193.000000
s hg38.chr14_GL000009v2_random     33710 85 +    201709 AAAAATAATCCAGAACATAGAAATTTTACTAGGATGAT-AAAGAGCATCTG-CAGAGGTAGATCACAGGATG-ATCTCTTTATTTTTT
s panTro5.chr9                  41709649 85 + 116767853 AAAAATAATCCAGAACATAGAAATTTTATTAGGATGAT-AAAGAGCATCTG-CAGAGGTAGATCACAGGATG-ATCTCTTTATTTTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055089 85 - 114479721 AAAAATAATCCAGAACATAGAAATTTTATTAGGATGAT-AAAGAGCATCTG-CAGAGGTAGATCACAGGATG-ATCTCTTTATTTTTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90737 83 -    416926 AAAAATAATCCAGAACATAGAAATTTTATTAGGATAAT-AA--AACATCTG-CAGAGGTATATCACAGGATG-AACTCTTTATTTTTT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40827403 85 + 122973662 AAAAATAATATAGAATGTAGAAATTTTATTAGGATAAT-AAACAACATATG-CAGAGGTAGATCACAAGATG-AACTTCTAATTTTTT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111103982 73 - 111193037 AAAAATAATCCAGAACATGGAAGTTTTATTAGGATGAT-AAACAACATCTG-CAG------------AGATG-AGCTCTTTATTTTTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          362278 81 +    434444 AAAAATAATCCAGAACATAGAAATTTTGTTAGGAT-----AGTAGCATATG-AAGAGGTAGATCAGAAGATG-AACTTTTTATTTTTT
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66459355 81 +  90373283 AAAAATAATCCAGAACATAGAAATTTTGTTAGGAT-----AGTAACATATG-AAGAGGTAGATCAGAAGATG-AACTTTTTATTTTTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509803 81 -   1547936 AAAAATAATCCAGAACATAGAAATTTTGTTAGGAT-----AGTAGCATATG-AAGAGGTAGATCAGAAGATG-AACTTTTTATTTTTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25333 85 +    168452 AAAAATAATCCAGAACATGGAAGTTTTATTAGGATGAT-AAACAACATCTG-CAGAGGTAGATCACAAGATG-AGCTCTTTATTTTTT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64655585 86 -  72162052 AAAAATATTCCAGAACACGGAAATTTTATTAGGATAAT-AAGCAACATATG-CAGAGGAAGATGACAAGATGAAACTTTTTATTTTCT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068088 86 +   1314817 AAAAATATTCCAGAACATGGAAACTTTATTAGGATAAT-AAACAACACATG-CAGAGGCAGATCACAAGATGAAACTTTTTATTTTCT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6425877 86 -   6597006 AAAAATATTCCAGAACATGGAAATTTTATTAGGATAAT-GAACAACATATG-CAGAGGCAGATCACAAGATGAAACTTTTTATTTTCT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19669884 83 -  27850971 AAAAATGTTCAAAAACATAAACATTTTATTAGGAAAAT-A---AATATATGAAAGAACCAGATCATAAAATG-AATGCTTTGTTGTCT
i otoGar3.GL873538             I 502 C 0
s canFam3.chr2                  79128401 84 -  85426708 -AAAAAAATTGAGAACATAAAAATTTCATTTGGATAATGAAACAACATGTT-TGGAACCAGATTATAAAATA-AACTTTTTATTG-CT
i canFam3.chr2                 C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1766431  0 -   2296528 C
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=752030.000000
s hg38.chr14_GL000009v2_random     33795 89 +    201709 AACAAAATGAATTTTAAGATAAATGTCTTTGTCTGCAGATGCATCTTAAGACAAGAAAGTGAAGAAAAAACAAATGTTAATATGCTGTG
s panTro5.chr9                  41709734 88 + 116767853 AAC-AAATGAATTTTAAGATAAATGTCTTTATCTGCAGATGCATCTTAAGACAAGAAAATGAAGAAAAAACAAATGTTAACATGCTGTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055174 88 - 114479721 AAC-AAATGAATTTTAAGATAAATGTCTTTATCTGCAGATGCATCTTAAGACAAGAAAATGAAGAAAAAACAAATGTTAACATGCTGTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           90820 89 -    416926 AACAAAATGAATTTTAAGATAAATGTCTTTATCTGCAGATGCACCTTAAAACAAGAAAATGAAGAAAAAACAAATGTTAATATGCTGTA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40827488 89 + 122973662 AACAAAATGAATTTTAAGATAAATGTCTTTATCTGCAGACGCACCTTAAAACAAGAAAATGAAGAAAAAATAAATGTTAATATGCTGTA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111104055 89 - 111193037 AACAAAATGCATTTTAAGAGAAATGTCTTTATCTGCAGATGCACCTTCAAACAGGAAAATGAAGAAAAAATAAATGTTAATATGCTGTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          362359 89 +    434444 AACAAAATGAATTTTAAGATAAATGTCTTTATCTGCAGACGCACCTTAAAACAAGAAAATGAAGAAAAAACAAATATTAATATGCTGTA
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66459436 89 +  90373283 AACAAAATGAATTTTAAGATAAATGTCTTTATCTGCAGTTGCACTTTAAAACAAGAAAATGAAGAAAAAACGAATGTTAATATGCTGTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1509884 89 -   1547936 AACAAAATGAATTTTAAGATAAATGTCTTTATCTGCAGACGCACCTTAAAACAAGAAAATGAAGAAAAAACAAATGTTAATATGCTGTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25418 89 +    168452 CACAAAATGCATTTTAAGAGAAATGTCTTTATCTGCAGATGCACCTTAAAACAGGAAAATGAAGAAAAAGCAAATGTTAATATGCTGTA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64655671 89 -  72162052 AACAAAATGAATTTTAAGATAAGTGCCTTTATTTGCAGATGCACCTTAAAACAAGAAAATGAAGAGAAAAGTAACGTTAATATGCTCTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068174 89 +   1314817 AACAAAATGAATTTTAAGATAAGTGCCTTTATTTGCAGATGCACCTTAAAACAAGAAAATGAAGAGAAAAGTAATGCTAATATGCTGTA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6425963 89 -   6597006 AACAAAATGAATTTTAAGATAAGTGCCTTTATTTGCAGATGCACCTTAAAACAAGAAAATGAAGAGAAAAGTAACGTTAATATGCTGTA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19669967 88 -  27850971 AACAAAACAAATTTTTAAA-AAGTACATTTAACTGCAGATTTACCTTAAAACAAGAAGAAGAGAAGCGAAAAAATGCTGATATGTTGTA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79128485 89 -  85426708 AACAAAACACATTTTAAAATGAACACATTTATTTGCAGATTTACCTTAAAACAGGAAAAAGAAAAAAGAAAAAGTGCTGATATGTTATA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1766431 89 -   2296528 AACAGAGTGAATTTTAAATTAAGCATATTTATTTGCAGATTTACCTTAAAACAAGAAGAAGAGAAAAGAAGAAATGCTGATATGTTGTA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2918505 1467 +   4212913 I

a score=4897.000000
s hg38.chr14_GL000009v2_random     33884 1 +    201709 C
s panTro5.chr9                  41709822 1 + 116767853 C
i panTro5.chr9                 C 0 I 1
s panPan2.chr13                 96055262 1 - 114479721 G
i panPan2.chr13                C 0 I 1
s gorGor5.CYUI01015896v1           90909 1 -    416926 C
i gorGor5.CYUI01015896v1       C 0 C 0
s ponAbe2.chr21_random           2919972 1 +   4212913 C
i ponAbe2.chr21_random         I 1467 I 481
s nomLeu3.chr1a                 40827577 1 + 122973662 C
i nomLeu3.chr1a                C 0 I 1
s macFas5.chr13                111104144 1 - 111193037 C
i macFas5.chr13                C 0 I 1
s macNem1.NW_012012823v1          362448 1 +    434444 C
i macNem1.NW_012012823v1       C 0 I 1
s chlSab2.chr2                  66459525 1 +  90373283 C
i chlSab2.chr2                 C 0 I 4
s manLeu1.NW_012105442v1         1509973 1 -   1547936 C
i manLeu1.NW_012105442v1       C 0 I 1
s colAng1.NW_012121088v1           25507 1 +    168452 C
i colAng1.NW_012121088v1       C 0 I 1
s saiBol1.JH378105              64655760 1 -  72162052 C
i saiBol1.JH378105             C 0 I 1
s cebCap1.NW_016107851v1         1068263 1 +   1314817 C
i cebCap1.NW_016107851v1       C 0 I 1
s aotNan1.NW_018488791v1         6426052 1 -   6597006 C
i aotNan1.NW_018488791v1       C 0 I 1
s otoGar3.GL873538              19670055 1 -  27850971 T
i otoGar3.GL873538             C 0 I 1
s canFam3.chr2                  79128574 1 -  85426708 T
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1766520 1 -   2296528 T
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798 0 - 210400635 C
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I

a score=2226669.000000
s hg38.chr14_GL000009v2_random     33885 309 +    201709 -AA-AAAAATAGAGAAGAATTAGAAAGGAAAGGGAAACAATATAAGAAAGAAGTTGAAGC---AAAACAACTTGAACCAACTATTCAATCACTAGAGATGAAACCGAAGACTACAAGAAATACTCCAAATCAGATAAATAAATCTTTGGTAAAAATTCTATATTTTAAACTTTA-----------------------------------------TTTTATCA-----ATGTTACTTATAA-TATCCTCTTGATTTAATATATAATAT-TTTGGTCTAAAACAAA-CCAGAAATGTTATCTCATTTTTAAAAAATGAATGATGACACTTACAGGTACAATTATT------------TTTATTATAAATCTTGGCA
s panTro5.chr9                  41709824 312 + 116767853 -AA-AAAAATAGAGAAGAATTAGAAAGGAAAGAGAAACAACATAAGAAAGAAGTTGAAGC----AAACAACTTGAACCAACTGTTCAATCACTAGAGATGAAACCGAAGACTGCAAGAAATACTCCAAATCAGGTAAATCAATCTTTGGTAAAAATTCTATATTTTAAACTTTA-----------------------------------------TTTTATCA-----ATGTTACTTATAA-TATCCTCTTGATTTAATATACAATAT-TTAGGTCTAAAACAAA-GCAGAAATGTTATCTCATTTTTGAAAAATGAATGATGACAATTACAGGTACAATTATTAAT--------ATTTATTATAAATCTTGGCA
i panTro5.chr9                 I 1 C 0
s panPan2.chr13                 96055264 312 - 114479721 -AA-AAAAATAGAGAAGAATTAGAAAGGAAAGAGAAACAACATAAGAAAGAAGTTGAAGC----AAACAACTTGAACCAACTGTTCAATCACTAGAGATGAAACCGAAGACTGCAAGAAATACTCCAAATCAGGTAAATCAATCTTTGGTAAAAATTCTATATTTTAAATTTTA-----------------------------------------TTTTATCA-----ATGTTACTTATAA-TATCCTCTTGATTTAATATACAATAT-TTAGGTCTAAAACAAA-GCAGAAATGTTATCTCATTTTTGAAAAATGAATGATGACAATTACAGGTACAATTATTAAT--------ATTTATTATAAATCTTGGCA
i panPan2.chr13                I 1 C 0
s gorGor5.CYUI01015896v1           90910 304 -    416926 -AA-AAAAATAGAGAAGAATTAGAAAGGAAAGAGAAACAATATAAGAAAGAAGTTGAAGC---AAAACAACTTGAACCAACTGTTCAGTCACTAGAGATGAAATCGAAGACTGCAAG-AATACTCCAAATC-GGTAAATCAATCTTTGGTAAAAATTCTATATTTTAAACTTTA------------------------------------------TTTATCA-----CTGTTACTTATAA-TATCCACTTGATTTAATATAT-ATTT-TTAGGTCTAAAAC-----CAGAAATGTTATCTCATTTTT-AAAAATGAATGATGACACTTACAGGTACAATTCTTAAT--------ATTTATTATAAATCTTGGCA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40827579 313 + 122973662 -AA-AAAAATACAGAAGAATTAGAAAGGAAAGAGAAACAATATAAGAAAGAAGTTGAAGC---AAAACAACTTGAGCTGACTGTTCAATCACTAGAGATGAAACCGAAGACTGCAAGAAATACTCCAAATCAGGTAAATCAATCTTTGGTAAAAATTCTGTATTTTAAACTCTA-----------------------------------------TATTTTAAACTGTATGTTACTTATAA-TATCCACTTTATTTAATATATATTAT-TTAGGTCTAAAAC-----CAGAAATGTTATCTCATTTTT-AAAAATGAATGATGACACTTACAGGTACAATTATTAAT--------ATTTATTATAAATCTTGGCA
i nomLeu3.chr1a                I 1 C 0
s macFas5.chr13                111104146 312 - 111193037 -AA-AAAAATAGAGAAGAATTAGACAGGAAAGAGAAACAACATAAGAAAGAAGCTGAAGC---AAAACAACCTGAACCGACTGTTCAGTCACTAGAGATGAAACCAAAAACTGCAAGAAGTACTCCAAATCAGGTAAATCAATCTTTGGTAAAAATTCTATATTTTAAGCATTA------------------------------------------TTTATCA-----ATTTTACTTATAA-TATCCACTTGATTTAATATATACTATAATAGGTCTAAAACAAA-TCAGAAATGTTATCTCACTTTT-AAAAATGAATGATGACACTTACAGGTACAATTATTAAT--------ATTTATTATAAGTCTTGGCA
i macFas5.chr13                I 1 C 0
s macNem1.NW_012012823v1          362450 312 +    434444 -aagaaaaatagagaagagttagaaaggaaggagaaacaatgtaagaaagaaGTTGAAGC----AAACAACTTGAACCGACTGTTCAGTCACTAGAGATGAAACCGAAGACTGTAAGAAATACTCCAAATCAGGTAAATCAATCTTTGGTAAAAATTCTGTATTTTAAACTTTA-----------------------------------------TTTTAGCA-----ATGTTACTTATAA-TATCCCCTTGATTTAATATATATTAT-TTAGGTCTAAAACAAA-CCAGAAATGTTATCTCATTTTT-AAAAATGAATGATGACTTTTACAGGTACAATTATTAAT--------ATTTATTATAAATCTTGGCA
i macNem1.NW_012012823v1       I 1 C 0
s chlSab2.chr2                  66459530 349 +  90373283 -AAAAAAAATAGAGAAGAATTAGAAAGGAAAGAG----AATGTAAGAAAGAAGTTGAAGC----AAACAACTTGAACCCACTGTTCAGTCACTAGAGATGAAACCAAAAACTGCAAGAAATACTCCAAATCAGGTAAATCAATCTTTGGTAAAAATTCTATATTTTAAACATTATTAAATCAATCTTTGGTAAAAATTCTGTATTTTAAACTTTATTTTAGCA-----ATGTTACTTATAA-TATCCCCTTGATTTAATATATATTAT-TTAGGTCTAAAACAAA-CCAGAAATGTTATCTCACTTTT-AAAAATGAATGATGACACTTACAGGTACAATTATTAAT--------ATTTATTATAAGTCTTGGCA
i chlSab2.chr2                 I 4 C 0
s manLeu1.NW_012105442v1         1509975 312 -   1547936 -AAGAAAAATAGAGAAGAGTTAGAAAGGAAAGAGAAACAATGTAAGAAAGAAGTTGAAGC----AAACAACTTGAACCGACTGTTCAGTCACTAGAGATGAAACCGAAGACTGTAAGAAATACTCCAAATCAGGTAAATCGATCTTTGGTAAAAATTCTATATTTTAAGCATTA------------------------------------------TTTATCA-----ATTTTACTTATAA-TATCCACTTGATTTAATATATACTATAATAGGTCTAAAACAAA-TCAGAAATGTTATCTCACTTTT-AAAAATGAATGATGACTTTTACAGGTACAATTATTAAT--------ATTTATTATAAATCTTGGCA
i manLeu1.NW_012105442v1       I 1 C 0
s colAng1.NW_012121088v1           25509 311 +    168452 -AA-AAACATAGAGAagaattagaaaggaaagagaaacaacatgagaaagaAGTTGAAGC---AAAACAACTTGAACCGACTGTTCAGTCACTAGAGATGAAACCAAAAACTGCAAGAAATACTCCACATCAGGTAAATCAATCTTTGGTAAAAATTCTATATTTCAAACTTTA------------------------------------------TTTATCA-----ATTTTACTTATAA-TATCCACTTGATTTAATATATACTAT-TTAGGTCTAAAACAAG-TCAGAAATGTTATCTCACTTCT-AAAAATTAATGATGACACTTACGGGTACAATTATTAAT--------ATTTATTAGAAGTCTTGGCA
i colAng1.NW_012121088v1       I 1 C 0
s saiBol1.JH378105              64655762 309 -  72162052 -AA-AATCTAACAGAAGGGTTAGAAAGGAAATGGGAACAGTATGAGAAAGAAGTTAAA------CAACAACTTAAACTGACTGTTCGGTCATTAGAGATGGAACCGAAGACCTTAAGAAATATTCCAAATCAGGTAAATCCATCTTTGATAAAAATTCTATATCTTCAACTTTA-----------------------------------------TTATATCA-----ATATTACTTATAA-TATCCACTTGATGTAATACATCTTAT-TTAGATCTAAAACAGA-CCAGAAATGTTATTTCATTTTT-TAAAATGATTGATGATGCTTATAGGTACaattattaat--------atttattatatGTCTTGGCA
i saiBol1.JH378105             I 1 C 0
s cebCap1.NW_016107851v1         1068265 309 +   1314817 -AA-AAACTTAAGGAAGAGTTAGAAGGGAAATTGGAACAATATGAGAAAGAAGCTAAA------CAACAACTTAAACTGACTGTTCAGTCATTAGAGATGGAACTGAAGACCTTAAGAAATAATCCAAATCAGGTAAATCAACCTTTGATAAAAATTCTATATCTTCAACTTTA-----------------------------------------TTATTTCA-----ATATTACTTATAA-TATCCACTTGATGTAATACATCTTAT-TTAGGTCTAAAACAGA-CCAGAAATGTTATCTCATTTTT-AAAAATGAATGATGATGCTCATAGGTACAATTATTAAT--------ATTTATTATGTGTCTTGGCA
i cebCap1.NW_016107851v1       I 1 C 0
s aotNan1.NW_018488791v1         6426054 312 -   6597006 -AA-AAACTTAAGGAAGCGTTAGAAAGGAAATGGGAACAATATAAGGAAGAAGTTAAAGC---CAAACAACTTGAACTGACTGTTCAATCATTAGAGATGGAACTGAAGACCTTAAGAAATACTCAAAATCACGTAAATCGATCTTTGATAAAAATTCTATATCTTTAACTTTA-----------------------------------------TTTTATCA-----ATATTACTTATAA-TATCCACTTGATTTAATACATCTTAT-TTAGGTCTAAAACAAA-CCAGAAATGTTATCTCATTTTT-AAAAATGAATGATGATGCTTATAGGTACAATTATTAAT--------ATTTATTATATGTCTTGGCA
i aotNan1.NW_018488791v1       I 1 C 0
s otoGar3.GL873538              19670057 305 -  27850971 -AA-AAAAATAGAGAACAGTTAAGAAGAAAAGAAGAGCAATACAGGAAAGAAGTTGAAGCGAAACAACAACTTGAACTCACTCTCAGAACACTAGATATGGAATTGAGGACTGTAAAAAATAATTTGGACCAGGTAAATCAGGCTTTGGTAAAAATTTTATATTTCTAACTTTA-----------------------------------------TTTCATAA-----AGATTATTTATACTTATCCCTTTGATTTAGTATGTATTAT-TTCAGTTTAAAACAAA-CCTAAAATGTTATCTTATCTT--GAAAATTTACTATGA----TATAGCTAAGATTA--------------TTTATTATAAATTGTGGCA
i otoGar3.GL873538             I 1 C 0
s canFam3.chr2                  79128576 298 -  85426708 -AA-AAAATTAGGGAGCAATTAAGAAATAAAGAAGAGCAATATAGTAAAGAAGTCGAAATGAAACAACAACTTGAGCTTAATCTTAGAACACTAGACCTGGAATTGAAGAGTGTAAAAAACAATTTGAATCAGGTAAAT----TTTTGACAAGAATTTTATAT----------------------------------------------------TTCCATCA-----ATATTTCTTATAA-TATCCTTTTGACTTAATATATATTAT--TAGGTTTGAAATAGA-TTAAAAATTTAATTTTATCCTAATAGGAACAACCATTATATTTATAGCTAAAATTATTAC----------CTTATTGGAATTCTTGGTT
i canFam3.chr2                 I 1 I 1746
s dasNov3.JH570393               1766521 321 -   2296528 GAA-AAAATTAGAGAACAATTAAGAAGAAAAGAAGAGCAATATAGTAAAGAAGTTGAAATGAAACAACAACTGGAACTCACTCTTCGAACGCTAGATATGGAATTGAGGACTGTAAGAAATAATTTGAATCAGGTAAATTAATCTGTGGTAAGAATTACATATTTCTAATTTTA-----------------------------------------TTTCATTA-----ATATTATTTATGA-TATCCCTTTGATTTAATTAATTTTAT-TTAGATTTAAAGTAAACCCCAAAATGTTATCTCCT-----AAATATGAGCTATAACATTCATAGTTAAAATCATTATTTAAAATTATTTTACTGCAATTGTTGGCA
i dasNov3.JH570393             C 0 I 2053
e calJac3.chr1                 130385798   0 - 210400635 C
e rheMac8.chr15                   520842   5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2919973 481 +   4212913 I

a score=43875.000000
s hg38.chr14_GL000009v2_random     34194 4 +    201709 TCCA
s panTro5.chr9                  41710136 4 + 116767853 TCCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055576 4 - 114479721 TCCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91214 4 -    416926 TCCA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40827892 4 + 122973662 TCCA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111104458 4 - 111193037 TCCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          362762 4 +    434444 TCCA
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66459879 4 +  90373283 TCCA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1510287 4 -   1547936 TCCA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25820 4 +    168452 TCCA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64656071 4 -  72162052 TCCA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068574 4 +   1314817 TCCA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6426366 4 -   6597006 TCCA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19670362 4 -  27850971 TCTA
i otoGar3.GL873538             C 0 I 709
s canFam3.chr2                  79130620 4 -  85426708 TCCA
i canFam3.chr2                 I 1746 C 0
s dasNov3.JH570393               1768895 4 -   2296528 TCCA
i dasNov3.JH570393             I 2053 C 0
e calJac3.chr1                 130385798 0 - 210400635 C
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2919973 481 +   4212913 I

a score=72390.000000
s hg38.chr14_GL000009v2_random     34198 18 +    201709 CATAGGATATTATTTTAT
s panTro5.chr9                  41710140 18 + 116767853 CATAGGATATTATTTTAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055580 18 - 114479721 CATAGGATATTATTTTAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91218 18 -    416926 CATAGGATATTATTTTAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40827896  5 + 122973662 CATAG-------------
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111104462 18 - 111193037 CATAGGATATTATTTTAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          362766 18 +    434444 CATAGAATACTATTTTAT
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66459883 18 +  90373283 CATAGGATATTATTTTAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1510291 18 -   1547936 CATAGAATACTATTTTAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25824 18 +    168452 CATAGGATATTATTTTAT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64656075 15 -  72162052 AGTATA---TTATTTTAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068578 15 +   1314817 AGTATG---ATATTTTAT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6426370 18 -   6597006 AATATGATATTATTTTAT
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79130624 18 -  85426708 AGTAGTATCCAATTTCAT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1768899 18 -   2296528 AGTGAAGTCCTATTTCAG
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19670366 709 -  27850971 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2919973 481 +   4212913 I

a score=368401.000000
s hg38.chr14_GL000009v2_random     34216 50 +    201709 TACAAAGAGC----TTTTGAAAACAATAATATGCCATAATATATACTTAGTGAT
s panTro5.chr9                  41710158 50 + 116767853 TACAAAGAGC----TTTTGAAAACAATAATGTGACATAATATATACTTAGTGAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055598 50 - 114479721 TACAAAGAGC----TTTTGAAAACAATAATGTGACATAATATATACTTAGTGAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91236 50 -    416926 TACAAAGAGC----TTTTGAAAACAATAATATGCCATAATATATACTTAGTGAT
i gorGor5.CYUI01015896v1       C 0 C 0
s macFas5.chr13                111104480 50 - 111193037 TACCAAGTGC----TTTTGCAAACAATAACATGCCATAATGTATACTTAGTGAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          362784 50 +    434444 TACAAAGAGC----TTTTGAAAACAATTATATACCATAATATACACTTAGTGAT
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66459901 50 +  90373283 TACCAAGTGC----TTTTGCAAACAATAACATGCCATAATGTATACTTAGTGAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1510309 50 -   1547936 TACAAAGAGC----TTTTGAAAACAATTATATACCATAATATACACTTAGTGAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25842 50 +    168452 TACCAAGTGC----TTTTGCAAACAATAATATGCCATAATGTATACTTAGTGAT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64656090 50 -  72162052 TACAAAGAGC----TTTTGAAAACAATAATATGCCATAATATATACTTAGTGAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068593 50 +   1314817 TATGAAGAGC----TTTTGAAAACAATAATATGCCATAATATATACTTAGTGAT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6426388 50 -   6597006 TACAAAGAGC----TTTTGAAAACAATAATATACCATAATGTATACTTAGTAAT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19671075 50 -  27850971 TACCAAGAGC----TTGTGAAAATAATGATATGCCATAATATATACATAGTGAT
i otoGar3.GL873538             I 709 C 0
s canFam3.chr2                  79130642 49 -  85426708 TACAAGGAGC----TTTTG-AAACAATCAAATGCTGTAATATATACTTAATGAA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1768917 54 -   2296528 AACTAGGAGCTCTTTTTTGAAAACAATGAAATGCCATAAAAACTACTTAATCAT
i dasNov3.JH570393             C 0 I 190
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e nomLeu3.chr1a                 40827901  0 + 122973662 C
e ponAbe2.chr21_random           2919973 481 +   4212913 I

a score=21312.000000
s hg38.chr14_GL000009v2_random     34266 3 +    201709 AAC
s panTro5.chr9                  41710208 3 + 116767853 AAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055648 3 - 114479721 AAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91286 3 -    416926 AAC
i gorGor5.CYUI01015896v1       C 0 C 0
s macFas5.chr13                111104530 3 - 111193037 AAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          362834 3 +    434444 AAC
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66459951 3 +  90373283 AAC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1510359 3 -   1547936 AAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25892 3 +    168452 AAC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64656140 3 -  72162052 AAC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068643 3 +   1314817 AAC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6426438 3 -   6597006 AAC
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19671125 3 -  27850971 AAT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79130691 3 -  85426708 AAT
i canFam3.chr2                 C 0 C 0
e calJac3.chr1                 130385798 0 - 210400635 C
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1768971 190 -   2296528 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e nomLeu3.chr1a                 40827901 0 + 122973662 C
e ponAbe2.chr21_random           2919973 481 +   4212913 I

a score=586465.000000
s hg38.chr14_GL000009v2_random     34269 93 +    201709 CTATTGATAAAGATTTTGTTCCCAGTAAAATTGTTCCTTGTAC-----TTCCTGCCATTTCATATTGATTACTGTACCT--AATACTATAAAGAGGAAAC
s panTro5.chr9                  41710211 93 + 116767853 ATATTGATAAAGATTTTGTTCCCAGTAAAATGGTTCCTTGTAC-----TTCCCCCTATTTCATATTGATTACTGTACCT--AATACTATAAAGAGGAAAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055651 93 - 114479721 ATATTGATAAAGATTTTGTTCCCAGTAAAATGGTTCCTTGTAC-----TTCCCCCTATTTCATATTGATTACTGTACCT--AATACTATAAAGAGGAAAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91289 93 -    416926 CTATTGATAAAAATTTTGTTCCAGGTAAAATTGTTCCTTGTAC-----TTTCCCCTATTTCATATTGATTACTGTACCT--AATATTATAAAGAGGAAAC
i gorGor5.CYUI01015896v1       C 0 I 2
s nomLeu3.chr1a                 40827901 84 + 122973662 ---------AAAATTTTGTTCCCGGTAAAATTGTTCCTTTTAC-----TTTCCCCTATTTCATATTGATTACTGTACCT--AATATTACAAAGAAGAAAC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111104533 93 - 111193037 CTATTGATAAAAATGTTGTTCCCAGGAAAATTGTTCCTTGTAC-----TT--CCCTATTTCATATTGATTACTGTACCTAAAATAAAATAAAGAAGAAAC
i macFas5.chr13                C 0 I 2
s macNem1.NW_012012823v1          362837 88 +    434444 GTATTGATAAAAATTTTGTTCCCAGTAAAATTGTTCCTTTTTC-----TTTCCCTTATTTCATACTGATTACCT-------AATATTATAAAGAAGAAAC
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66459954 87 +  90373283 CTATTGATAAAAATGTTGTTCCCAGTAAAATTGTTCCTTTTTC-----TTTCCC-TATTTCATACTGATTACCT-------AATATTATAAAGAAGAAAC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1510362 88 -   1547936 GTATTGATAAAAATTTTGTTCCCAGTAAAATTGTTCCTTTTTC-----TTTCCCTTATTTCATACTGATTACCT-------AATATTATAAAGAAGAAAC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25895 94 +    168452 CTATTGATAAAAATGTTGTTCCCAGTAAAATTATTTCTTGTAC-----TTCCCC-TATTTCATATTGATTACTGTACCTAAAATAAAATAAAGAAGAAAC
i colAng1.NW_012121088v1       C 0 I 2
s saiBol1.JH378105              64656143 93 -  72162052 TTATTGATAAAAGTTTTGTTCCCAGTAAAATAGTTCCTTGTAC-----TTTCCCCTATTTGGTATTGATTACTGTTTCT--AATATTATAAAGAGGAAAT
i saiBol1.JH378105             C 0 I 2
s cebCap1.NW_016107851v1         1068646 93 +   1314817 TTATTGATAAAAGTCTTGTTCCCAGTAATATAGCTCCTTGTAC-----TTTCCCCTGTTTCATGTTGATTACAGTTTCT--AATATTATAAAGGGGAAAC
i cebCap1.NW_016107851v1       C 0 I 2
s aotNan1.NW_018488791v1         6426441 93 -   6597006 TTATTGATAAAAGTTTTGTTCCCAGTAAAATAGTTCCTTGTAC-----TTTCCCCTATTTCATATTGATTACTGTTTCT--AATACTATAAAGGGGAAAC
i aotNan1.NW_018488791v1       C 0 I 2
s otoGar3.GL873538              19671128 94 -  27850971 TTGTTGATA----TTCTGTTCCTAGGGAAATAGTTCAGTGTATGAATATAAACCCCGGTTCACACTTATTACTGTTTCA--AGTATTACGAAAAGGAACA
i otoGar3.GL873538             C 0 I 1
s canFam3.chr2                  79130694 92 -  85426708 TTACTGATTAGTATTTTGTTCTTAATAAAATAGCTCAGTGTAT-----TTTCCCCTATTTTGCATTTATTGCCAGTGTA--AACATC-TGAAGAGGAAAT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1769161 90 -   2296528 ATATTGACAGATATTTTATTTTTAGTGAAATAGTTCAGTATAT-----TTTCCC--ATTTCCCATTTATTACTGTTTCA--AACATTATGAAAATGAAA-
i dasNov3.JH570393             I 190 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2919973 481 +   4212913 I

a score=10920.000000
s hg38.chr14_GL000009v2_random     34362 1 +    201709 A
s panTro5.chr9                  41710304 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055744 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91384 1 -    416926 A
i gorGor5.CYUI01015896v1       I 2 C 0
s ponAbe2.chr21_random           2920454 1 +   4212913 A
i ponAbe2.chr21_random         I 481 n 481
s nomLeu3.chr1a                 40827985 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111104628 1 - 111193037 A
i macFas5.chr13                I 2 C 0
s macNem1.NW_012012823v1          362925 1 +    434444 A
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66460041 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1510450 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25991 1 +    168452 A
i colAng1.NW_012121088v1       I 2 C 0
s saiBol1.JH378105              64656238 1 -  72162052 A
i saiBol1.JH378105             I 2 C 0
s cebCap1.NW_016107851v1         1068741 1 +   1314817 A
i cebCap1.NW_016107851v1       I 2 C 0
s aotNan1.NW_018488791v1         6426536 1 -   6597006 A
i aotNan1.NW_018488791v1       I 2 C 0
s otoGar3.GL873538              19671223 1 -  27850971 A
i otoGar3.GL873538             I 1 C 0
s canFam3.chr2                  79130786 1 -  85426708 A
i canFam3.chr2                 C 0 I 2
e calJac3.chr1                 130385798 0 - 210400635 C
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e dasNov3.JH570393               1769251 0 -   2296528 C
e cerAty1.NW_012002921v1          409531 1158 -    438202 I

a score=730164.000000
s hg38.chr14_GL000009v2_random     34363 88 +    201709 AATTATTGCA-ATCAC-AAATAATCTCATGATATTCTAAGAAGAGCTCTATAAATTTTATCTTA-TTTACCATTGGTGTTTTGAAATAAAA
s panTro5.chr9                  41710305 88 + 116767853 AATTATTGCA-ATCAC-AAATAATCTCATGATATTCTAAGAAGAGCTCTATAAATTTTATCTTA-TTTACCATTGGTGTTTTGAAATAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055745 88 - 114479721 AATTATTGCA-ATCAC-AAATAATCTCATGATATTCTAAGAAGAGCTCTATAAATTTTATCTTA-TTTACCATTGGTGTTTTGAAATAAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91385 87 -    416926 AATTATTGCA-ATCAC-AAATAATCTCATGATATTCTAAGAAGAGCTCTATAAATTTTATCTTA-TTTA-CATTGGTGTTTTGAAATAAAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40827986 88 + 122973662 AATTATTGCA-ATCAC-AAATAATCTCATGATATTCTAAGAGGAGCTCTATAAATTTTATCTTA-TTTACTATTGGTGTTTTGCAATAAAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111104629 89 - 111193037 AATTATTGCA-ATCAC-AAATAATCTCATGATATCCTAAGAAGAGCTCTATAAATTTTATCTTATTTTACCGTTGGTGTTTTAAAATAAAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          362926 88 +    434444 AATTATTGCA-GTCAC-AAATAATCTCATAATATTCTAAGAAGAGTTCTATAAATTTTATCTTA-TTTACTATTGGTGTTTTGAAATAAAA
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66460042 88 +  90373283 AATTATTGCA-ATCAA-AAATAATCTCATAATATTCTAAGAAGAGTTCTATAAATTTTATCTTA-TTTACTATTGGTGTTTTGAAATAAAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1510451 83 -   1547936 AATTATTGCA-GTCAC-AAATAATCTCATAATATTCTAAGAAGAGTTCTATAAATT-----TTA-TTTACTATTGGTGTTTTGAAATAAAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           25992 88 +    168452 AATTATTGCA-ATCAC-AAATAATTTCATGATATTCTAAGAAGAGCTCTATAAATTTTATCTTA-TTTACCGTTGGTATTTTAAAATAAAA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64656239 88 -  72162052 AATTATGGCA-ATCAC-AAATAATCTGATTATATTCTATGAAGAGCTCTATAAATTTTATCTTA-TTTACTATTGGTGTTTTGAAATAAAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068742 87 +   1314817 AATTATGGCA-ATCAC-AAGTAATCTGATGATATTCTATGAAGAGCTCTATAAATTTTATCTTA-TTTACTATTGGTG-TTTGAAATAAAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6426537 88 -   6597006 AATTATGGCA-ATCAC-AAATAATCTGATGATATTCTATGAAGAGCTCTATAAATTTTATCTTA-TCTACTATTGGTGTTTTGAAATAAAA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19671224 90 -  27850971 AGTTACTATACATAACAAAATAATCTTACGATTTTCTAAGAAGAGCTCTCTAAATTTTATCTTA-TTTACCAGTAGTGTTTTGAAATAAAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79130789 85 -  85426708 ATTTATTGCA-GCCAC-AGATAATCTCGTGATATTTT---AGGAGCTGTATAAATTTTACCTTG-TTTGGCATTGGTATTTTGAAATATAA
i canFam3.chr2                 I 2 I 209
s dasNov3.JH570393               1769251 82 -   2296528 -ATTTTCTGA-GTAGC-AAATAATCTTATGATTTTCTAAGAAGAGCACTATAATGT-----TTA-TTTTCCCTTGGTCTTTTAAAATATGA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798  0 - 210400635 C
e rheMac8.chr15                   520842  5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1208.000000
s hg38.chr14_GL000009v2_random     34451 6 +    201709 CTTTTC
s panTro5.chr9                  41710393 6 + 116767853 GTTTTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055833 6 - 114479721 GTTTTC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91472 6 -    416926 GTTTTC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40828074 6 + 122973662 GTTTTC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111104718 6 - 111193037 GTTTTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          363014 1 +    434444 G-----
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66460130 1 +  90373283 G-----
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1510534 1 -   1547936 G-----
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           26080 6 +    168452 GTTTTA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64656327 6 -  72162052 GGCTCC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068829 6 +   1314817 GGCTCC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6426625 6 -   6597006 GCCTCC
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19671314 6 -  27850971 GGCTTC
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79131083 6 -  85426708 GGCTTC
i canFam3.chr2                 I 209 C 0
s dasNov3.JH570393               1769333 6 -   2296528 GGTTTC
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130385798 0 - 210400635 C
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=70140.000000
s hg38.chr14_GL000009v2_random     34457 7 +    201709 TTTCGTA
s panTro5.chr9                  41710399 7 + 116767853 TTTCGTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055839 7 - 114479721 TTTCATA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91478 7 -    416926 TTTCGTA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40828080 7 + 122973662 TTTCGTA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111104724 7 - 111193037 TTTTGTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          363015 7 +    434444 TTTTGTA
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66460131 7 +  90373283 TTTTGTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1510535 7 -   1547936 TTTTGTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           26086 7 +    168452 TTTTGTA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385798 7 - 210400635 TTTTGTG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64656333 7 -  72162052 TTTCATA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068835 7 +   1314817 TTTCGTA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6426631 7 -   6597006 TTTCGTA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19671320 7 -  27850971 TTTTGTA
i otoGar3.GL873538             C 0 I 42
s canFam3.chr2                  79131089 7 -  85426708 TTTTGTA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1769339 7 -   2296528 TTTTGTT
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   520842 5 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=446488.000000
s hg38.chr14_GL000009v2_random     34464 50 +    201709 TTGATACATTTACACCACAGAAGTAACTGTGATCTCT-CA-GAGAA--CTAGAA
s panTro5.chr9                  41710406 50 + 116767853 TTGATATATTTACACCACAGAAGTAACTGTGATCTGT-CA-GAGAA--CTAGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055846 50 - 114479721 TTGATATATTTACACCACAGAAGTAACTGTGATCTGT-CA-GAGAA--CTAGAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91485 50 -    416926 TTGATGTATTTACACCACAGAAGTAACTGTGATCTGT-TG-GAGAA--CTAGAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40828087 50 + 122973662 TTGATATATTTGCACCACAAAAGTAACTGTGATCTGT-TG-GAGAA--CTAGAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520847 50 - 111343173 TTGATATATTTACACCACAGAAGTAACTGTGATCTGA-TG-GAGAA--CTAGAA
i rheMac8.chr15                I 5 C 0
s macFas5.chr13                111104731 50 - 111193037 TTGATATAATTACACCACAGAAGTAACTGTGATCTGT-TG-GAGAA--CTAGAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          363022 50 +    434444 TTGATATATTTACATCGCAGAAGTAACTGTGATCTGT-TG-GAGAA--CTAGAA
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66460138 50 +  90373283 TTGAAATATTTACATCGCAGAAGTAACTGTGATCTGT-TG-GAGAA--CTAGAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1510542 50 -   1547936 TTGATATATTTACATCACAGAAGTAACTGTGATCTGT-TG-GAGAA--CTAGAA
i manLeu1.NW_012105442v1       C 0 I 316
s colAng1.NW_012121088v1           26093 51 +    168452 TTGATGTAATTACACCACAGAAGTAACTGTGATCTGTGGG-GAGAA--CTAGAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385805 50 - 210400635 TTGATATATTCACACCACAGAAGTAATAATGATCTGG-TG-GAGAA--CTAAAA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64656340 50 -  72162052 CTGATGTATTTACACCACAGAAGTAACTGTGATCTGG-TG-GAGAA--CTAGAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068842 48 +   1314817 TTGATATTTTTACACCACAGAAGTAAC--TGATCTGG-TG-GAGAA--CTAGAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6426638 50 -   6597006 CTGATATATTTACACCACAGAAGTAACTATGATCTGG-TG-GAAAA--CTAGAA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19671369 45 -  27850971 TATATATATTTACAGCAGAAAAGTAACTATGATTTGG-CGTGAGAG--------
i otoGar3.GL873538             I 42 C 0
s canFam3.chr2                  79131096 51 -  85426708 TTTATGT-TTTACATTAGAGAAGTAGCTGCAGTTTGG-TG-CAAAACACTAGTA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1769346 39 -   2296528 TTTTTATATTTATGCTAGAAAAGTAGCCATGGTGTAG-TT--------------
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=283348.000000
s hg38.chr14_GL000009v2_random     34514 33 +    201709 GTAGAGTAAGAAGTCCT-GGGGA-AAATCCTGTAG
s panTro5.chr9                  41710456 33 + 116767853 GTAGAGTCAGAAGTCCT-GGGGA-AAATCCTGTAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055896 33 - 114479721 GTAGAGTCAGAAGTCCT-GGGGA-AAATCCTGTAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91535 33 -    416926 GTAGAGTCAGAAGTCCT-GGGGA-AAATCCTGTAG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40828137 33 + 122973662 GTAGAGTCAGCAGTCCT-GGGGA-AAATCCTGTAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520897 33 - 111343173 GTAGAATCAGAAGCCCT-GAGGA-AAATCCTGCAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111104781 33 - 111193037 ATAGACTCACAAGTCCT-GGGGA-AAATCCTGTAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          363072 33 +    434444 GTAGAGACAGAAGTCCT-GGGGA-AAATCCTGTAG
i macNem1.NW_012012823v1       C 0 I 340
s chlSab2.chr2                  66460188 33 +  90373283 GTAGAGTCAGAAGTCCT-GGGGA-AAATCCTGTAG
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           26144 33 +    168452 ATAGACTCAGAAGTCCT-GGGGA-AAATCCTGTAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385855 33 - 210400635 GTAGAGTTAGAAGCCCT-GGGGA-AAATCCTGCAG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64656390 33 -  72162052 GCAGAGTCAGAAGCCCT-GGGGA-AAATCCTGTGG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068890 33 +   1314817 GTAGAGTCAGAAGCCCT-GGGGA-AAATCTTGTGG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6426688 34 -   6597006 GTAGAGTCAGAAGCCCTGGGGGA-AAATCCTGTGG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19671414 34 -  27850971 TTAGAATCAGAAGACTT-GGGGGTAAATCCTAGAG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79131147 33 -  85426708 ATGGAGTACAAAGACCT-GGGGA-AAGTCCTGCAG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1769385 31 -   2296528 GAAGAACATAAAAGACA-GGGGA---TTTCTCCAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e manLeu1.NW_012105442v1         1510592 316 -   1547936 I
e cerAty1.NW_012002921v1          409531 1158 -    438202 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=364076.000000
s hg38.chr14_GL000009v2_random     34547 34 +    201709 CTTGCTTA-TATTTTTAACATTTCTTTTTCAA----ATT-
s panTro5.chr9                  41710489 34 + 116767853 CTTGCTTA-TGTTTTTAACATTTCTTTTTCAA----AAT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055929 34 - 114479721 CTTGCTTA-TATTTTTAACATTTCTTTTTCAA----AAT-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91568 34 -    416926 CTTGCTTA-TATTTTTAACATTTCTTTTTCAA----AAT-
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40828170 30 + 122973662 CTTGCTTA-TATTTTTAAC----CTTTCTCAA----AAT-
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520930 35 - 111343173 CTTACTTA-TATTTTTAACCTCTCTTTTTTAA---GGAT-
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111104814 34 - 111193037 CTTGCTTA-TATTTTTAACCTTTCTTTTTCAA----AAT-
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          363445 34 +    434444 CTTGCTTA-TATTTTTAACCTTTCTTTTTCAA----AAT-
i macNem1.NW_012012823v1       I 340 C 0
s cerAty1.NW_012002921v1          410689 34 -    438202 CTTGCTTA-TATTTTTAACCTTTCTTTTTCAA----AAT-
i cerAty1.NW_012002921v1       I 1158 C 0
s chlSab2.chr2                  66460221 34 +  90373283 CTTGCTTA-TATTTTTAACCTTTCTTTTTCAA----AAT-
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1510908 34 -   1547936 CTTGCTTA-TATTTTTAACCTTTCTTTTTCAA----AAT-
i manLeu1.NW_012105442v1       I 316 C 0
s colAng1.NW_012121088v1           26177 34 +    168452 CTTGCTTA-TATTTTTAACCTTTCTTTTTCAA----AAT-
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385888 38 - 210400635 CTTGCTTA-TATTTTTCACCTCTCTTTTTAAAAAAGAAT-
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64656423 34 -  72162052 CTCGCTTA-TATTTTTAACCTTTCTTTTTCAA----AAT-
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068923 34 +   1314817 CTCGCTTA-TATTTTTAACCTTCCTTTTTCAA----AAT-
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6426722 34 -   6597006 CTCGCTTA-TATTTTTAACCTTGCTTTTTCAA----AAT-
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19671448 34 -  27850971 AATGCTTT-TATTTTCAACCTCTTCTTTTCAA----AAT-
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79131180 35 -  85426708 CTCACTTAGTATTTTTAACCTCCCCATTCTGG----AAT-
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1769416 35 -   2296528 CTTGCata-tatatatatatatatatttttaa----gatt
i dasNov3.JH570393             C 0 I 481
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2508920.000000
s hg38.chr14_GL000009v2_random     34581 239 +    201709 TGTGGTAACTAGATGGGTTCATCAATGAATGTATATAGGAGTGAC--TAGTATAATGTCTAGATTTATGA------------TTT---AGTAA-----ATGTAATTCTTTCAACTGACTATAAAAGTGTT---AAAAGAGTCAAATTAAAATAGAATGTTATCAGTGAAACA-GAACTGTAATAA---CTCTGGGAAATTTTATCTGTCCAAATATGTGT-GA-ACTAAGGTTCTTACTATAGGGTGG-TGTATGGGTTAGATATCAAAGT
s panTro5.chr9                  41710523 242 + 116767853 TGTGGTAACTAGATGAGTTCATCAATGAATGTATATAGGAGTGAC--TAGTATAATGTCTAGATTTATGA------------TTT---AGTAA-----ATGTAATTCTTACAACTGACCATAAAAGTGTT---AAAAGAGTCAAATTGAAATAGAATGTTATCAGTGAAACA-GAACTGTAATAACTCCTCTGGGAAATTTTATCTGTCCAAATATGTGT-GA-ACTAAGGTTCTTACTGTAGGGTGG-TGTATGGGTTAGATATCAAAGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96055963 242 - 114479721 TGTGGTAACTAGATGAGTTCATCAATGAATGTATATAGGAGTGAC--TAGTATAATGTCTAGATTTATGA------------TTT---AGTAA-----ATGTAATTCTTACAACTGACTATAAAAGTGTT---AAAAGAGTCAAATTGAAATAGAATGTTATCAGTGAAATA-GAACTGTAATAACTCCTCTGGGAAATTTTATCTGTCCAAATATGTGT-GA-ACTAAGGTTCTTACTGTAGGGTGG-TGTATGGGTTAGATATCAAAGT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           91602 238 -    416926 TGTGGTAACTAGATGAGTTCATCAATGAATGTATATAGGAGTGAC--TAGTATAATGTCTAGATTTATGA------------TTT---AGTGA-----ATGTAATTCTTATAACTGACTATAAAAGTGTT---AAAAGAGTCAAA-TGAAATAGAATGTTATCAGTGAAACA-GAACTGTAATAA---CTCTGGGAAATTTTATCTGTCCAAATACGTGT-GA-ACAAAAGTTCTTACTATAGGGTGG-TGTATGGGTTAGATATCAAAGT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40828200 234 + 122973662 TGTGGTAACTAGATGAGTTCATCAATGAATATATATAGGAGTGAC--TAGTA-----TCTAGATTTATGA------------TTT---AGTAA-----ATGTAATTCTTATAACTGACAATAAAAGTGTT---AAAAGAGTCAAACTGCAATAAAATATTATCAGTGAAACA-GAACTGTAACAA---ATTTGGGAAATTTTATCTGTCCAAATACGTGT-GA-ACTAAGGTTCTTACTATAGGGTGG-TGTATGGGTTAGATAGCAAAGT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   520965 235 - 111343173 TGTGATAACTGAATAAGTTCATCAATGTATGTGTGTAGAAGTGCT--TAGTACAATGTCTAGATTTATGA------------TTT---AGTAA-----ATGTAATTCTTACAACTGACTAAAAAATGTTT--------AGTCAAATCACAATACAATATGATCAGGGAAACA-GAACTTTCAAAA---CTTTGAGAGATTTTATCTGTCCAAATAGATGTAGA-GGTAAAGCTCTTACTATGGGGTGG-TGTCTGGGTTAGATATCAGAGT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111104848 239 - 111193037 TATAGTAACTAGAGGAGTTCATCAATGAATGTATATAGGAGTGAC--TAGTATAATGTCTAGATTTATGA------------TTT---AGTAA-----ATGTAATTCTTATAACTGACTATAGAAGTGTT---AAAAGAGTCAAATTGCAATAGAATATTATCTGGGAAACA-GAACTGTAATAA---CTTTGGGAAATTTTATCTGTCCAAATACGTGT-GA-ACTAAGGTTCTTATTATAGGGTGG-TGTAAGGGTTAGATATCAAAGT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          363479 239 +    434444 TGTGGTAACTAGATGAGTTCATCAATGAATGTATATAGGAGTGAC--TAGTATAATGTCTAGATTTATGA------------TTT---AGTAA-----ATGTAATTCTTACAACTGACTATAAAATTGTT---AAAAGAGTCAAATTGCAATAGAATATTATCAGTGAAACA-GAACTATAATAA---CTTTGGGAAATTTTATCTGTCCAAATACATGT-GA-ACTAAGATTCTTACTATAGGGTGG-TGAATGGGTTAGATATTAAAGT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          410723 239 -    438202 TGTGGTAACTAGATGAGTTCATCAATGAATGTATATAGGAGTGAC--TAGTATAATGTCTAGATTTATGA------------TTT---AGTAA-----ATGTAATTCTTACAACTGACTATAAAATTGTT---AAAAGAGTCAAATTGCAATAGAATATTATCAGTGAAACA-GAACTATAATAA---CTTTGGGAAATTTTATCTGTCCAAATACATGT-GA-ACTAAGATTCTTACTATAGGGTGG-TGAATGGGTTAGATATCAAAGT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66460255 239 +  90373283 TGTGGTAACTAGAGGAGTTCATCAATGAATGTATATAGGAGTGAC--TAGTATAATGTCTAGATTTATGA------------TTT---AGTAA-----ATGTAATTCTTATAACTGACTTTTAAAGTGTC---AAAAGAGTCAAATTGCAATAGAATATTATCAGTGAAACA-GAACTGTAATAA---CTTTGGTAAATTTTATCTGTCCAAATACATGT-GA-AGTAAGGTTCTTACTATAGGGTGA-TGAATGGGTTAGATATCAAAGT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1510942 239 -   1547936 TGTGGTAACTAGATGAGTTCATCAATGAATGTATATAGGAGTGAC--TAGTATAATGTCTAGATTTTTTA------------TTT---AGTAA-----ATGTAATTCTTACAACTGACTATAAAATTGTT---AAAAGAGTCAAATTGCAATAGAATATTATCTGGGAAACA-GAACTGTAATAA---CTTTGGGAAATTTTATCTGTCCAAATACATGT-GA-ACTAAGATTCTTACTATAGGGTGG-TGAATGGGTTAGATATCAAAGT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           26211 239 +    168452 TGTGGTAACTAGATGAGTTCATCAGTGAATGTATATAGGAGTGAC--TAGTATAATGTCTAGATTTATGA------------TTT---AGTAA-----ATGTAATTCATATAACTGACTATAGAAGTGTT---AAAAGAGTCAAATTGCAATAGAATATTATCTGTGAAACA-GAACTGTAATAA---CTTTGGGAAATTTTATCTGTCCAAATACATGT-GA-ACTAAGGTTCTTACTATAGGGTGG-TGTAAGGGTTAGATATCAAAGT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130385926 226 - 210400635 TTTGAAAACTAAATCAGTTTCTCAGTGTATATATGTAGAAGTGCT--TAGTACAATGTCTAAATTTATGA------------TGT---AGTAA-----ATGTAATTCTTATAACTGAC--TAAAAATGTT---AGAAGTGTCACATCACAATAGAGTCTTATCAGGGAAGCA-GAACTTTAAAAA---CTTTGAGAAATTTTATCTGTCCAAATATACATGGA-AGTAACTTGCTTACTATA-------------GGTTAGATATGAGAGT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64656457 239 -  72162052 TGTGGTAACTAAATGAGTTCATCAGTAAATGTGTAAAGGAGTGAC--TAGTACAATGTCTAGATTTATGA------------TTT---TGTAA-----ATATAATTCTTATCACTGACTATAAAAATGTT---AAAAGAGTCAAATTGCAATAGAATATTATTAGGAAAACA-GAACTTTAATAA---CTTTGGAAAATTTTATCTGTCCAAATACGTGC-AA-ATTGAGGCTCTTACTATAGGGTGG-TGTATGGGTTAGAGGTCAGAAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1068957 239 +   1314817 CGTGGTAACTAAATGAGTTCATCAGTAAATGTGTAAAGGAGTGAC--TAGTACAATGTCTAGATTTATGA------------TTT---TGTAA-----ATATAATTCTTATCACTGACTATAAAAGTGTT---AAAAGAGTCAAATTGCAATAGAATATTATCAGGAAAACA-GAACTTTAATAA---TTTTGGGAAATTTTATCTGTCCAAATACATGC-AA-ATTGAGGCTCTTACTATAGGGTGG-TGTATGGGTTAGATGTCAGAAT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6426756 239 -   6597006 TGTGGTAACTAAATGAGTTCATCAGTAAATGTGTAAAGGAGTGAC--TAGTACAATGTCTAGATTGATGA------------TTT---TGTAA-----ATATAATTCTTATCACTGACTATAAAAGTGTT---AAAAGAGTCAAATTGCAATAGAATATTATCAGGAAAACA-GAACTTTAATAA---CTTTGGGAAATTTTATCTGTCCAAATATGTGA-GA-ATTGAGACTCTTACTATGGGGTGG-TGTTTGGGTTAGATGTCAGAAT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19671482 243 -  27850971 TGTGCT-GTTGCATAAGTTCATTGA-----GTATATGGAAATTCT--TAGTACAATG-CCAGATTTATCaataaatataattttc---aataa-----atataattcttataattGACTATAAAAATGTTAGTAGAAAAGTAGAATGTCTATAGAATATTCTCAGGAAAAAG-GAACTTAGAT-----CTTAGGGAAATTTT---CATCAGAATATAAGCAGA-ATTAAAGCATTTACTGTACAGTAG-TATGTAGGTTAAATAGCAGAAT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79131215 224 -  85426708 TATGATAACTAAAAGAGATCATTA----ATGTATGCAGAAGTGTTTATAGTATGATGCCTAGATTTGTCA------------TTTATCAGTAG-----ATATAATTCTTATAACTGACTATAGAAATGTT---ACAAAAGTAGAACATCTATGGAATATTCTCAGGAAAA----------AATAA---TTTTAGGAAA-TTAATCTGTCCAAATATATGCAGA-GCTAAGTATTTTCCTGTGGACTG--------TGTTCGATATCAGAGT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1769932 243 -   2296528 tgtgataattaaatgagttacttgg----tgtataaataagtgct--tagtacaatgcctagttttatca------------gtt---atcaataactgtgtaattattaCAGTTGACTATAAAAATATT---AGAAACATAGAATATCTATAGAATATTCTCAGAAAAAAAGGAACTTAGAAAA---CTTTAAGAAATTTAATCTGTCCAAATATATGC-AACGCTAAGGTTCTTAATGTAGTATAGTTGTGTAGATTAGATATCAAATT
i dasNov3.JH570393             I 481 I 1722
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1413551.000000
s hg38.chr14_GL000009v2_random     34820 161 +    201709 GTAAATGCAA----TTTTTTGAT---ATATTTT---AATTTAGTCAAATTTGTTAATGCTTTAATTTA-TG-----------CTTTTGAGTTTGTTGTAATTCAGGGAAAGGCTTTTCC------------------------------AATTCT--GAAATTCTT---AAAAATTCTC------------TG-----------------------------------------------------gtgt------------------gcgtgtgtgtgtgtgtgtTTACT-TTTATAAATT
s panTro5.chr9                  41710765 159 + 116767853 GTAAATGCCA----TTTTTTGAT---ATATTTT---AATTTAGTCAAATTTGTCAATGCTTTAATTTA-TG-----------CTTTTCAGTTTGTTGTAATTCAGGGAAAGGCTTTTCC------------------------------AATTCT--GAAATTCTT---AAAAATTCTC------------TG-----------------------------------------------------gtgt--------------------gtgtgtgtgtgtgtgtTTACT-TTTATAAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96056205 164 - 114479721 GTAAATGCAA----TTTTTTGAT---ATATTTT---AATTTAGTCAAATTTGTCAATGCTTTAATTTA-TG-----------CTTTTCAGTTTGTTGTAATTCAGGGAAAGGCTTTTCC------------------------------AATTCT--GAAATTCTT---AAAAATTCTC------------TG-----------------------------------------------------gtgt----------------gtgtgtgtgtgtgtgtgtgtgtgtTGTTTATAAATT
i panPan2.chr13                C 0 I 3366
s gorGor5.CYUI01015896v1           91840 156 -    416926 GTAAATGCAA----TTTTTTGAT---ATATCTT---AATTTAGTCAAATTTGTTAATGCTTTAATTTA-TG-----------CTTTTGAGTTTGTTGTAATTCAGGGAAAGGCTTTTCC------------------------------AATTCT--G-AATTCTT---AAAAATTCTC------------TG-----------------------------------------------------GTGT----------------------GCGTGTGTGTGTGTTTACT-TTTATAAATT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40828434 179 + 122973662 GTAAATGCAA----TTTTTTTAT---ATATTTT---AATTTAGTCAAATGTGTTAATGCTTTAATTTA-TG-----------CTTTTGGGTTTGTTGTAATTCAGGGAAAGGCTTTTCC------------------------------AATTCT--GATATTCTT---AAAAATTCTC------------TG-----------------------------------------------------gtgtgtgtgtgtgcatgcgtgtgtatgtgtgtgtgtgtgtTTACT-TTTATAAATT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   521200 184 - 111343173 ATAAATGCAA---TTTTCTTTTTCTAAGATTTT---AATTCAGTCAAATTTTTTAGCATTTAACTTTA-TG-----------C-TTTGAGTTTGTTGTAATTCAGAGAAAGGCTTTTCC------------------------------AATTCT--GATATTCTT---AAAAATTCTCgagagagagagaga-----------------------------------------------------gagtgtgtgtgtgc----------gcgcgtgtgtgtgtgtTTACT-TTTATGGATC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111105087 164 - 111193037 GTAAATGCA-----TTATTTGAT---ATATTTT---AATTTAGTCAAATTTGTTAATGCTTTAATTTA-TG-----------CTTTTGGGTTTGTTGTAATTCAGGCAAAGGCTTTTCC------------------------------AATTCT--GATATTCTT---ACAAATTCTC------------TG-----------------------------------------------------gtgtgcatgtgtgc--------------gtgtgtgtgtgtTTACT-TTTATGAACT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          363718 176 +    434444 ATAAATGCAA---TTTTTTGGAT---ATATTTT---AATTTAATCAAATTTGTTAATGCATTAATTTC-TG-----------CTTTTGGGTTTGTGGTAATTCAGGGAAAGGCTCTTCC------------------------------AATTCT--GATATTCTT---AAAAATTCTC------------TG-----------------------------------------------------gtgtgcgtgtgtgcgt----gtgtgtgtgtgtgtgtgtgtTTACT-TTTATAAATT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          410962 175 -    438202 ATAAATGCAA---TTTTTTTGAT---ATATTTT---AATTTAGTCAAATTTGTTAATGCATTAATTTC-TG-----------CTTTTGGGTTTGTGGTAATTCAGGGAAAGGCTCTTCC------------------------------AATTCT--GATATTCTT---AAAAATTCTC------------TG-----------------------------------------------------GT-TGCgtgtgtgcgt----gtgtgtgtgtgtgtgtgtgtTTACT-TTTATAAATT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66460494 206 +  90373283 GTAAATGCAA---TTTTTTTGAT---ATCTTTT---AATTTAGTCAAATTTCTTAATGCATTAATTTC-TG-----------CTTTTGGGTTTGTGGTAATTCAGGGAAAGGCTCTTCCATAAAGAGCCTATAAAATTAAGAATATCTTAATTTTAAGATATTCTT---AAAAATTCTC------------TG-----------------------------------------------------gtgtgtgtgtgtgt------gtgtgtgtgtgtgtgtgtgtTTACT-TTTATAAATT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1511181 174 -   1547936 ATAAATGCAA---TTTTTTTGAT---ATATTTT---AATTTAGTCAAATTTGTTAATGCATTAATTTC-TG-----------CTTTTGGGTTTGTGGTAATTCAGGGAAAGGCTCTTCC------------------------------AATTCT--GATATTCTT---AAAAATTCTC------------TG-----------------------------------------------------gtgtgcgtgtgtgc------gtgtatgtgtgtgtgtgtgtTTACT-TTTATAAATT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           26450 165 +    168452 GTAAATGCA----TTGTTTGGAT---ATATTTT---AATTTAGTCAAATTTGTTAATGCTTTAATTTA-TG-----------CTTTTGGGTTTGTTGTAATTCAGGCAAAGGCTTTTCC------------------------------AATTCT--GATATTCTT---AAAAATTCTC------------TG-----------------------------------------------------gtgtgcatgtgtgc--------------gtgtgtgtgtgtTTTCT-TTTATAAATT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130386152 158 - 210400635 ATAAATGCAATTTTCTTTTTGCA---ATatttt---aatttagtcaaatttgttaatattttacttcg-tg-----------ctttga-gtttgttgtaattcagagtaagacttttac------------------------------aattct--gacattctt---aaaaattctc------------ta-----------------------------------------------------------------------------gcatgtgtgtgtttttttact-tttatggatt
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64656696 232 -  72162052 GTACATGCAATTTTCTTTTTGTT---ATATTTT---AATTTAGTCAAATTTGTTAATGTTTTAATTTA-TG-----------CTTTTAGGTTTGTTGTAATTCAGCTAAAGGTTTTTCC------------------------------AATTCT--GATATTCTC---AAAAAttctt------------tctctttctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgt----gtgtgtgtgtgtgtgtgtgtTTACT-TTTATGAATT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1069196 189 +   1314817 GTAAATGCAATTTTCTTTTTGTG---ATATTTT---AATTTAGTCAAATTTGTTAATGTTTTAATTTA-TG-----------CTTTTAGGTTTGTTGTAATTCAGCAAAAGGCTTTTCC------------------------------AATTCT--GATATTCTT---AAAAATTCTC------------TG-------------------------------------------gtgtgtgtgtgtgtgtgtgtgtgtgt----gtgtgtgtgtgtgtgtgtgtTTACT-TTTATGAATT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6426995 179 -   6597006 GTAAATGCAATTTTCTTTTCGTG---ATATTTT---AATTTAGTCAAATTTGTTAATGTTTTAATTTA-TG-----------CTTTTAGGTTTGTTGTAATTCAGCGAAAGGCTTTTCC------------------------------AATTCT--GATATTCTT---AAAAATTCTC------------TG-----------------------------------------------------GAgtgtgtgtgtgtgt----gtgtgtgtgtgtgtgtgtgtTTACT-TTTATGAATT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19671725 112 -  27850971 GTAAAC-TAA----------------ATTTTTT---AATGTAGTCAAAGTTATTAATCT-----TTTA-TA-----------CCTTTGGTTTTGTTGTAATTCAGAGAATGGAATTTTC------------------------------AATTCT--GAGATTCTT---AAAAATTCTA------------TA-----------------------------------------------------GTG-----------------------------------------------------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79131439 149 -  85426708 GTAAACTCAA-------------------TTTT---AGTGTAGTCAGATGTATTAGTCTTTTTTTTTT-TTTTTTTTTAGGCCTTCTGGGTTTGTTGTAAATCAGAGAaagacctttcc------------------------------aattct--gagattctT---AGAATTTTGT------------CA----------------------------------------------------------------------------------TGATTTCTTTTTTCCT-TTCATGCATT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1771897 158 -   2296528 gtaaacccaa---ttttttaact---caattttaaaaatgtagtctaattttttaa-gctttattttgctc-----------cttctgggtttgttataattcagagaaagacatttcc------------------------------aattct--gagattctttaaaaaaattctc------------tt---------------------------------------------------------------------------------atggtttctttttcaca-ttcttgggtt
i dasNov3.JH570393             I 1722 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1166630.000000
s hg38.chr14_GL000009v2_random     34981 102 +    201709 CATTGACTTTAAAT-AAATTTCTGAACTTTTTGGAACTTATGCTC-TAT-AAAG-TTCAAAGTTTTGCTTCAACTT-----TTTCTCCAGTTGGATATCCACTTACAGTAA
s panTro5.chr9                  41710924 102 + 116767853 CATTGACTTTAAAT-AAATTTCTGAACTTTTTGTAATTTATGCTC-TAT-AAGG-TTCAAAGTTTTGCTTCAACTT-----TTTCTCCAGTTGGATATTCACTTACAGTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96059735 102 - 114479721 CATTGACTTTAAAT-AAATTTCTGAACTTTTTGTAATTTATGCTC-TAT-AAGG-TTCAAAGTTTTGCTTCAACTT-----TTTCTCCAGTTGGATATTCACTTACAGTAA
i panPan2.chr13                I 3366 C 0
s gorGor5.CYUI01015896v1           91996 100 -    416926 CA-TGACTCTAAAT--AATTTCTGAACTTTCTGGAATTTATGCTC-TAT-AAGG-TTCAAAGTTTTGCTTCAACTT-----TTTCTCCAGGTGGATATCCACTTATGGTAA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40828613 102 + 122973662 CATTGACTTTAAAT-ACATTTCTGAACTTTTTGGAATTTATGCTC-TAA-AAGG-TTCAAAGTTTTGCTTCAACTT-----TTTCTCCAGTTGGACATCCACTTACAGTAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   521384 102 - 111343173 CATTGACTTCAAAT-AAACTTTTGAACTTTTTGAAATGTATGTTC-TCT-AAGG-TTCAAGGTTTTGCTTCAACTT-----TTTCTCCAGTTGGATATCCACTTACAGCAA
i rheMac8.chr15                C 0 I 58
s macFas5.chr13                111105251 102 - 111193037 CGTTGACTTTAAAT-AAATTTCTGAACTTTTTGGAATTTATGCTC-TAC-AAGG-TTCAAAGTTTTGCTTCAACTT-----TTTCTCCTGTTGGATATCCACTGACAGTAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          363894 102 +    434444 CATTGACTTTAAAT-ACATTTCCGAACTTTTTGGAATTTATGTTC-TAT-AAGG-TTCAAAGTTTTGCTTCAACTT-----TTTCTCCAGTTGGACATCCACTTACAGTAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          411137 102 -    438202 CATTGACTTTAAAT-ACATTTCTGAACTTTTTGGAATTTATGCTC-TAT-AAGG-TTCAAAGTTTTGCTTCAACTT-----TTTCTCCAGTTGGACATCCACTTACAGTAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66460700 102 +  90373283 CATTGACTTTAAAT-ACATTTCTGAACTTTTTGGAATTTATGCTC-TAT-AAGG-TTCAAAGTTTTGCTTCAACTT-----TTTCTCCAGTTGGACATCCACTTACAGTAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1511355 102 -   1547936 CATTGACTTTAAAT-ACATTTCTGAACTTTTTGGAATTTATGCTC-TAT-AAGG-TTCAAAGTTTTGCTTCAACTT-----TTTCTCCAGTTGGACATCCACTTACAGTAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           26615 102 +    168452 CATTGACTTCAAAT-AAATTTCTGGACTTTGTGGAATTTATGCTC-TAC-AAGG-TTCAAAGTTTTGCTTCAACTT-----TTTCTCCAGTTGGATATCCACTGACAGTAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130386310  98 - 210400635 cattaacttcagat-aaatttttgaac-ttttgaagtttatgctc-tct-gagg----gaaggtttgcttcaactt-----tttctccagttggatatccacttacagcaa
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64656928 102 -  72162052 CATTGACTTCAAAT-AAAGTTTTGAACTTTTTGGAATTTATGCTC-TAT-AAGG-TTCAAAGTTTTGCTTTAACTT-----TTTCTCCAGTTGGAGATCCACTTACAGTAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1069385 102 +   1314817 CATTGACCTCAAAT-AAATTTTTGAACTTTTTGGAATTTATGCTC-TAT-AAGT-TTCAAAGTTTTGCTTTAACTT-----TTTCTCCAGTTGGATATCCACTTACAGTAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6427174 102 -   6597006 CTTCGACTTCAAAT-AAATTTTTGAACTTTTTGGAATTTATGTTC-TAT-AAGG-TTCAAAGTTTTGCTTTAACTT-----TTTCTCCAGTTGGACATCCACTTACGGTAA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19671837 102 -  27850971 -GTTGTCTTCAAAT-AAATTTTTGAACTCCAGGGAATTTATGCTG-TAT-AAGGTTTTGATGTTTTAATTCAATGG-----TTTTTCTGTTTGGATATCCACTTATTGCAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79131588 108 -  85426708 CATTGTCTTCAATT-ACATTTTTGAACTTTGGggaatttatgcttgtataaagg-tttgaggcttgaatccaacttta-tgtttttctagttggatatccacttactgcaa
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1772055 104 -   2296528 cattttttttctattaaatttttgtattattaggaatttatgct------aaga-tgtgaggtttggatccaactttattttttttccagttggatatctacttgtgggag
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=235411.000000
s hg38.chr14_GL000009v2_random     35083 29 +    201709 -CCTTTTTAG----TATATGGATGTGCAGGTTAT
s panTro5.chr9                  41711026 29 + 116767853 -CCTTTTTAG----TGTATGGATGTGCAGGTTAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96059837 29 - 114479721 -CCTTTTTAG----TGTATGGATGTGCAGGTTAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           92096 28 -    416926 -ACTTTTTAG----TGTA-GGATGTGCAGGTTAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40828715 29 + 122973662 -CCTTTTTAG----TATATGGATGTGCAGGTTAT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111105353 29 - 111193037 -ACTTTTTAG----TGTATGGATGTGCAGGTTAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          363996 29 +    434444 -CCTTGTTAG----TGTATGGATGTGCAGGTTAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          411239 29 -    438202 -CCTTGTTAG----TGTATGGATGTGCAGGTTAT
i cerAty1.NW_012002921v1       C 0 I 610
s chlSab2.chr2                  66460802 29 +  90373283 -CCTTGTTAG----TGTATGGATGTGCAGGTTAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1511457 29 -   1547936 -CCTTGTTAG----TGTATGGATGTGCAGGTTAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           26717 29 +    168452 -ACTTTTTAG----TGTATGGATGTGCAGGTTAT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130386408 30 - 210400635 -ccttttaaat---tgtttgaaagtacagggtgt
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64657030 29 -  72162052 -TCTTTTTAG----TGCATGGGTGTGCCGGTTGT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1069487 29 +   1314817 -TCTTTTTAG----TGCATGGATGTACAGGTTAT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6427276 29 -   6597006 -TCTTTTTAG----TGCATGGATGTACAGGTTAT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19671939 24 -  27850971 ----------CACTTGTATTAATATACAGGTTAT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79131696 27 -  85426708 -cctattcat----tgtataaa--cagagattat
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1772159 30 -   2296528 gctcatttat----tATATAAATCTATAAGTTAT
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   521486 58 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=247728.000000
s hg38.chr14_GL000009v2_random     35112 25 +    201709 ACTTTAGCTTCAGAGGTAATCATGA
s panTro5.chr9                  41711055 25 + 116767853 TCTTTAACTTCAGAGGTAATCATGA
i panTro5.chr9                 C 0 I 5
s panPan2.chr13                 96059866 25 - 114479721 TCTTTAACTTCAGAGGTAATCATGA
i panPan2.chr13                C 0 I 5
s gorGor5.CYUI01015896v1           92124 25 -    416926 TCTTTAACTTCAGAGGTAATCATGA
i gorGor5.CYUI01015896v1       C 0 I 5
s nomLeu3.chr1a                 40828744 25 + 122973662 TCATTAACTTCAGAGGTAATCATGA
i nomLeu3.chr1a                C 0 I 5
s macFas5.chr13                111105382 25 - 111193037 TCTTCAGCTTCAGAGGTAATCACGA
i macFas5.chr13                C 0 I 5
s macNem1.NW_012012823v1          364025 25 +    434444 TCATTCCCTTCAGAGGTAATCATGA
i macNem1.NW_012012823v1       C 0 I 5
s chlSab2.chr2                  66460831 25 +  90373283 TCATTCACTTCAGAGGTAATCATGA
i chlSab2.chr2                 C 0 I 4
s manLeu1.NW_012105442v1         1511486 25 -   1547936 TCATTCACTTCAGAGGTAATCATGA
i manLeu1.NW_012105442v1       C 0 I 5
s colAng1.NW_012121088v1           26746 25 +    168452 TCTTTAGCTTCAGAGGTAATCATCA
i colAng1.NW_012121088v1       C 0 I 5
s calJac3.chr1                 130386438 25 - 210400635 tctttcACTTCAGAGGTAACCATGA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64657059 25 -  72162052 TCTTTAACTTCAGAGGTAATCATGA
i saiBol1.JH378105             C 0 I 5
s cebCap1.NW_016107851v1         1069516 25 +   1314817 TCTTTAACTTCAGAGGTAATCATGA
i cebCap1.NW_016107851v1       C 0 I 5
s aotNan1.NW_018488791v1         6427305 25 -   6597006 TCTTTAACTTCAGAGGTAATCATGA
i aotNan1.NW_018488791v1       C 0 I 5
s otoGar3.GL873538              19671963 25 -  27850971 TCTTTAATTACAGAGGAAATTATGA
i otoGar3.GL873538             C 0 I 5
s canFam3.chr2                  79131723 25 -  85426708 tttttAATTTCAGAGAAAATCATGA
i canFam3.chr2                 C 0 I 3
s dasNov3.JH570393               1772189 25 -   2296528 TTTTTATTTTCAGAGGAAATCATGA
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   521486 58 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          411268 610 -    438202 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=550783.000000
s hg38.chr14_GL000009v2_random     35137 52 +    201709 -----TATTTTATTGAGTACTAGCTAAAACTTTC-TTTTGTTTTATTTAGGATTTTCA
s panTro5.chr9                  41711085 52 + 116767853 -----TATTTTATTGAGTACTAGCTAAAACTTTC-TTTTGTTTTATTTAGGATTTTCA
i panTro5.chr9                 I 5 C 0
s panPan2.chr13                 96059896 52 - 114479721 -----TATTTTATTGAGTACTAGCTAAAACTTTC-TTTTGTTTTATTTAGGATTTTCA
i panPan2.chr13                I 5 C 0
s gorGor5.CYUI01015896v1           92154 52 -    416926 -----TATTTTATTGAGTACTAGCTAAAACTTTC-TTTTGTTTTATTTAGGATTTTCA
i gorGor5.CYUI01015896v1       I 5 C 0
s nomLeu3.chr1a                 40828774 52 + 122973662 -----TATTTTATTGAGTGCTAGCTAAAACTTTC-TTTTGTTTTATTTAGGATTTTCA
i nomLeu3.chr1a                I 5 C 0
s rheMac8.chr15                   521544 52 - 111343173 -----TATTTTATTGAATACTAGTTAAAAGTTTG-TTTTGTTTTATTTAGGATTCTCA
i rheMac8.chr15                I 58 I 376
s macFas5.chr13                111105412 52 - 111193037 -----TATTTTATGGAGTACTAGCTAAAACTTTC-TTTTATTTTATTTAGGATTTTCA
i macFas5.chr13                I 5 C 0
s macNem1.NW_012012823v1          364055 53 +    434444 -----TATTTTATTGAGTACTAGGTAAAACTTTCTTTTTGTTGTATTTAGGATTTTCG
i macNem1.NW_012012823v1       I 5 C 0
s chlSab2.chr2                  66460860 53 +  90373283 -----TATTTTATTGAGTACTAGGTAAAACTTTCTTTTTGTTTTATTTAGGATTTTCA
i chlSab2.chr2                 I 4 C 0
s manLeu1.NW_012105442v1         1511516 52 -   1547936 -----TATTTTATGGAGTACTAGCTAAAACTTTC-TTTTATTTTATTTAGGATTTTCA
i manLeu1.NW_012105442v1       I 5 C 0
s colAng1.NW_012121088v1           26776 52 +    168452 -----TATTTTATGGAGTACTAGCTAAAACTTTC-TTTTATTTTATTTAGGATTTTCA
i colAng1.NW_012121088v1       I 5 C 0
s calJac3.chr1                 130386463 52 - 210400635 -----TATTTTATTGAGTGCTGGCTTTTATTTTC-TTTTGTTTTATTTAGGATTTTCA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64657089 52 -  72162052 -----TGTCTTATTGAGTACTAGCTAAAACTTTC-TTTTGTTTTATTTAGGATTTTCA
i saiBol1.JH378105             I 5 C 0
s cebCap1.NW_016107851v1         1069546 52 +   1314817 -----TATCTTATTGAGTACTAGCTAAAACTTTC-TTTTGTTTTATTTAGGATTTTCA
i cebCap1.NW_016107851v1       I 5 C 0
s aotNan1.NW_018488791v1         6427335 52 -   6597006 -----TATCTTATTGAGTACTAGCTAAAACTTTC-TTTTGTTTTATTTAGGATTTTCA
i aotNan1.NW_018488791v1       I 5 C 0
s otoGar3.GL873538              19671993 52 -  27850971 -----CATTTTACTGAGTGCTAGCTAAAAGTTTC-CTCTGATTTCTTTAGACTTCTTA
i otoGar3.GL873538             I 5 C 0
s canFam3.chr2                  79131751 50 -  85426708 -----CATTTTATTGAGTTCCAACTAAAAGACTC---TCATTTTACTTAGGCTTCTCC
i canFam3.chr2                 I 3 C 0
s dasNov3.JH570393               1772214 57 -   2296528 TATGTCATTTTAGTGAGTGGTAACTAAAAGATTG-CTTTGTTTTACTTAGGTTTCTGA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          411268 610 -    438202 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=3500731.000000
s hg38.chr14_GL000009v2_random     35189 453 +    201709 TAATCAGGAAGAAATGAAAGATCTGATGGATGAAAATTGCATTTTGAAGACAGATATTGCTATACTCCGACAGGAAATACGCACAATGAAAAATGACAACCTGGAAAAAGAAAATAAATATCTTAAGGACGTTAAAATTGTTAAAAAAACAAACGCTGCCCTTGAAAAGTATATAAAACTCAATGAGGAATTGATAACAAGAACAGCATTCCGGTATCA--ACAAGAGCTTAATGATCTCAAAGCTGAGAATACAAGGCTCAATTCCGAACTGTTGAAGGAAGAAGAAAGCAACAAAAGACTGGAAGCTGAAATTGAATC--ATCAGTCTAGACTGACTGCTGCTATAAGTAAGCACAGTGAAAGTGTGAAAACAGAAAGAAACCTAAAACTTGCATTAGAGTGAACACAAGAT-G------TTTCCGTACAAGTAAAAATGAGTTCTGATATTTCCGAAGTAG
s panTro5.chr9                  41711137 455 + 116767853 TAATCATGAAGAAATGAAAGATCTGATGGATGAAAATTGCATTTTGAAGACAGATATTTCTATACTGAGACAGGAAATATGCTCAATGAAAAATGACAACCTGGAAAAAGAAAATAAATATCTTAAGGACGTTAAAATTGTTAAAAAAACAAATGCTGCCCTTGAAAAGTATATAAAACTCAATGAGGAATTGATAACAAAAACAGCATTCTGGTATCA--ACAAGAGCTTAATGATGTCAAAGCTGAGAATACAAGGCTAATTTCTGAACTGTTGAAGGAAGAAGAAAGCAACAAAAGACCGGAAGCTGAAACTGAATCTTATCAGTCTAGACTGGCTGCTACTATAAGTAAACACAGTGAAAGTGTGAAAACAGAAAGAAACCTAAAACTTGCTTTAGAGAGAACGCAAGAT-G------TTTCCGTACAAGTAAAAATGAGTTCTGATATTTCCGAAGTAG
i panTro5.chr9                 C 0 I 5
s panPan2.chr13                 96059948 456 - 114479721 TAATCATGAAGAAATGAAAGATCTGATGGATGAAAATTGCATTTTGAAGACAGATATTTCTATACTGAGACAGGAAATATGCTCAATGAAAAATGACAACCTGGAAAAAGAAAATAAATATCTTAAGGACGTTAAAATTGTTAAAAAAACAAATGCTGCCCTTGAAAAGTATATAAAACTCAATGAGGAATTGATAACAAAAACAGCATTCTGGTATCA--ACAAGAGCTTAATGATGTCAAAGCTGAGAATACAAGGCTCAATTCTGAACTGTTGAAGGAAGAAGAAAGCAACAAAAGACCGGAAGCTGAAACTGAATCTTATCAGTCTAGACTGGCTGCTGCTATAAGTAAACATAGTGAAAGTGTGAAAACAGAAAGAAACCTAAAACTTGCTTTAGAGTGAACACAAGATAG------TTTCCATACAAGTAAAAATGAGTTCTGATATTCCCGAAGTAG
i panPan2.chr13                C 0 I 5
s gorGor5.CYUI01015896v1           92206 449 -    416926 TAATCATGAAGAAA--AAAAGTCTGATGGATGAAAATTGCATTTTGAAGACAGATATTGCTATACTCAGACAGgaaatatg-acaatgaaaaatgacaa-ctggaaaaagaaaaTAAATATCTTAAGGACATTAAAATTGTTAAAGAAACAAATGCTGCCCTTGAAAAGTATATAAAACTCAATGAGGAAATGATAACAA-AACAGCATTCCGGTATCA--ACAAGAGCTTAATGATCTC-AAGCTGAGAATACAAGGCTCAATGCCGAACTGTTGAAGGAAAAAGAAAGCAAGAAAAGACTGGAAGCTGACATTGAATCTTATCAGTCTAGACTGGCTGCTGCTATAAGTAAACACAGTGAAAGTGTGAAAACAGAAAGAAACCTAAAACTTGCTTTAGAGAGAACACAAGAT-G------TTTCTGTACAAGTAAAAATGAGTTCTGCTATTTCCAAAGTAA
i gorGor5.CYUI01015896v1       C 0 I 5
s nomLeu3.chr1a                 40828826 450 + 122973662 TAATCATGAAGAAATGAAAGATCTGATGGATGAAAATTGCATTTTGAAGACAGATATTGCTATACTCAGACAGgaaatatgcacaatgaaaaatgacaacctggaaaaagaaaaTAAATATCTTAAGGA-ATTAAAATTGTT----AAATAAATGCTGACCTTGGAAAGAGTATGAAACTCAATGAGGAAATGATAACAAAAACAGCATTCCAGTATCA--ACAAGAGCTTAATGATCTCAAAGCTGAGAATGTAAGGCTCAATTCCAAACTGTTGAAGGAAAAAGAAAGCAAGGAAAGACTGGAAGCTGACATTGAATCTTATCAGTCTAGACTGGCTGCTGCTGTAAGTAAACACAATGAAAGTGTGAAAACAGAAAGAAACCTAAAACTTGCTTTAGAGAGAACACAAGAT-A------TTTCTGAACAAGTAAAAATCAGTTCTGATATTTCCAAAGTAA
i nomLeu3.chr1a                C 0 I 5
s macFas5.chr13                111105464 374 - 111193037 TACTCATGAAGAAACGGAAGATCTGATGGATGAAAATTGCATTTTGAAGACAGATATTGCTATACTCAGGCAGGAAATACTCACAATGAAAAATGACAACTTGGAAAAAGAAAATGAATATCTTAAGGACATTAAAATTGTTAAAGAAAGAAATGCTGCCCTTGAAAAGAGTATAAAACTCAATGAGGAAAT---AACAAAAACAGCATTCCAGGATCA--ACAAGAGCTGAAAGATCTCAAAGCTGAGAATAAAAGGCTCAATTCCGAACTGCTGaagaaaaaagaaagc------------------------------------------------------------------------------aacacagaaagaaaCCTAAAACTTACTTTACAGAACACACAAGAC-A------TTTCTGTGCAAGAAAAAATGAGTTCTGATATCTCCGAAGTTG
i macFas5.chr13                C 0 I 5
s macNem1.NW_012012823v1          364108 454 +    434444 TAATCGTGAAGAAATGAAAGATCTGATGGATGAAAATTGCATTTTGAAGACAGATGTTGCTATACTCAGACAGGAAATATGCACAATGAAAAATGACAGCCTGGAAAAAGAAAATAAATGTCTTACGGACATTAAAATTGTTAAGGAAATAAATGCTTACCTTGAAAAGAGTATAAAACTCAATGAGGAAAC---TAACAAAACAGCATTCCAGTATTGATACAAGAGCTTCATGATCTCAAGGCTGAGAATACAGGGCTCAATTCCAAACTGTTGAAGGAAAAAGAAAGCAAGGCAAGACTGGAAGCTGAAATTGAATCGTATCAGTCTAGACTGGCTGCTGCTATAAGTAAACACAGTGAAAGTGTGAAAACAGAAAGAAACCTAAGACTTGCTTTAGAAAGAACACAAGAC-G------TTTCTCTACAAGTAAAAATGACTTCTGATATTTCTGAAGTAG
i macNem1.NW_012012823v1       C 0 I 5
s chlSab2.chr2                  66460913 457 +  90373283 TAATCATGAAGAAATGAAAGATCTGATGGATGAAAATTGCATTTTGAAGACAGATGTTGCTATACTCAGACGGgaaatatgcacaatgaaaaatgacaacctggaaaaagaaaaTAAATGTCTTACGGACATTAAAATTGTTAAAGAAATAAACGCTTACCTTGAAAAGAGTATAAAACTCAATGAGGAAACAATCACAAAAACAGCATTCCAGTATTGATACAAGAGCTTCATGATCTCAAGGCTGAGAATACAGGGCTCAATTCCAGACTGTTGAGGGAAAAAGAAAGCAAGGCAAGACTGGAAGCTGAAATTGAATCCTATCAGTCTAGACTGGCTGCTGCTGTAAGTAAACACGGTGAAAGTGTGAAAACAGCAAGAAACCTAAGACTTGCTTTAGAGAGAACACAAGAC-G------TTTCTCTACAAGTAAAAATGACTTCTGATATTTCTGAAGTAG
i chlSab2.chr2                 C 0 I 5
s manLeu1.NW_012105442v1         1511568 455 -   1547936 TACTCATGAAGAAACGGAAGATCTGATGGATGAAAATTGCATTTTGAAGAGAGATGTTGCTATACTCAGACAGGAAATATGCACAATGAAAAATGACAGCCTGGAAAAAGAAAATAAATGTCTTACGGACATTAAAATTGTTAAAGAAAGAAATGCTGCCCTTGAAAAGAGTATAAAACTCAATGAGGAAAC--TAACAAAAACAGCATTCCAGTATTGATACAAGAGCTTCATGATCTCAAGGCTGAGAATACAGGGCTCAATTCCAAACTGTTGAAGGAAAAGGAAAGCAAGGCAAGACTGGAAGCTGAAATTGAATCGTGTCAGTCTAGACTGGCTGCTGCTATAAGTAAACACAGTGAAAGTGTGAAAACAGAAAGAAACCTAAGACTTGCTTTAGAGAGAACACAAGAC-A------TTTCTCTACAAGTAAAAATGACTTCTGATATTTCTGAAGTAG
i manLeu1.NW_012105442v1       C 0 I 5
s colAng1.NW_012121088v1           26828 452 +    168452 TAATCATGAAGAAATAAAAGATCTGATGGATGAAATTTGCATTTTGGAGACAGATATTGCTATACTCAGGCAGGAAATATGCACAATGAAAAATGACAACTTGGAAAAAGAAAATGAATATCTTAAGGACATTAACATTATTAAAGAAAGAAATGCTGCCCTTGAAAAGAGTATAAAACTCAATGAGGAAAT---AACAAAAACAGCATTCCAGGATCA--ACAAGAGCTTAATGATCTCAAAGCTGAGAATAAAAGGCTCAATTCCGAACTGCTGAAGGAAAACGAAAGCAAGGCAAGACTGGAAGCTGAAATTGAATCGTATCAGGCTAGACTGGCTGCTGCTATAAGTAAACACAGTGAAAGTGTGAAAACAGAAAGAAACCTAAAACTTGCTTTACAGAACACACAAGAC-A------TTTCTGTGCAAGTAAAAATGAGTTCTGATATTTCCGAAGTTG
i colAng1.NW_012121088v1       C 0 I 5
s calJac3.chr1                 130386515 452 - 210400635 AAGCTATGGAAAAAAGAAGGCTGTCATGGCTGAAAACTGCATGTTGAAGAGAGATGCTGCTGTACTCAGACGGAAATTACACACAATAAAAAATGCCAGCCTCAGAAAGGAAAAGGAACATATTCAGAAAATGAAAAGTATTCGAGAAATAAATGCTAACTTTCAAAAGAGTGTAAGACTCAATGAGGAAATTATAACAAAAACAATATCACAGTATTG--TCAACAGCTTAATGAACTCAAAGCTAAGAATACAAGGCTGAATTCAGAATTGAAGAAGGAAAAACACAACAAGGACAGAGTGGAAGCTGAAATTGAATCCCTCCGTTCTATCCTGGCTGCTACTATAAATGAGCACAATGAAAGGGTGGAAAC---AAAATACGTACAAGTTGCTTTACAGAGAGCACAAGAT-G------TTTCTGTACAAGAAGTAATGACTTCTAATATTTCTCAACTAA
i calJac3.chr1                 C 0 I 5
s saiBol1.JH378105              64657141 446 -  72162052 TAATCATGAAGAAATGAAAGATCTAATGCATGAAAATGGCATTTTGAAGAGAGACATTGCTATGCTTAGAGAGGAAATATGCACATTAAAAAATGACAGCCTCGAAAAAGAAAATAAATATTTTAAGGATTTTGAAATTATTGAAGAAATAAATACTGGTTTTGAAAACAGAAACAAACTCAGTGAGGAAATGATAACAAAAATAGTATCCCAGTGTCT--ACAACAGCTTAATGATCTCCGAGCTGAGAATACAAGGCTCAATTCTGAACTGGGGAAGGAAAGAGAAGATGAAGAAAGACTGGAAGCTGAAATTGAATCATATCAGTCTAGACTGGCTGCTGCTATAAGAGAACACAATCAAAGGGTGAAAACAGAAAGAGACCTCAAACTTTCTCTACAGAGAACACAAGAT-A------TTTCTTTACAGAGAAACACGAATTCTG---------AGCTAA
i saiBol1.JH378105             C 0 I 5
s cebCap1.NW_016107851v1         1069598 446 +   1314817 TAGTCATGAAAAAATGAAAGATCCGATGCATGAAAATGGCATTTTAAAGAGGGATATTGCTATGCTCAGAGAGGAAATATGCACATTAAAAAATGACAGCCTCAAAAAAGAAAATAAATATTTTAAGGATTTTGAAATTATTAAAGAAATAAATGCTCGTCTTGAAAAGAGTAACAAACTCAGTGAGGAAATGATAACAAAAATACTATCCCAGTATCG--ACAACAGCTTAAGGATCTCCAAGCTGAGAACACAAGCCTCAAATCTGAACTGGGGAAGGAAAAAGAAGATGAGGAAAGACTGGAAGCTGAAACTGAATCATATCAGTCTGGACTGGCTGCTGCCATAAGAGAACACAATCAAAGGGTGGAAGCAGAAAGAGACCTCAAACTTTCTTTACAGAGAACACAAGAT-A------TTTCTTTACAGATAAACATGAGTTCTG---------AACTAA
i cebCap1.NW_016107851v1       C 0 I 3
s aotNan1.NW_018488791v1         6427387 446 -   6597006 TAATCATGAAGAAATGAAAGATCTGATGCATGAAAATGGCATTTTGAAGAGAGATATTGCTATGCTCAGAGAGAAAATATGCACATTAAAAAATGACAGCCTTGAAAAAGAAAATAAATATTTTAAGGATTTTGAAATTTTTAAAGAAACAAGTGCTGGTCTTGAAAAGCGTTACAAACTCAGTGAGGAAATGTTAATAAAAACAGTATCCCAGTGTCG--ACAACAGCTTAATGATCTCCAAGGTGAGATCACAAGGTTCAATTCTGAACTGGGGAAGGAAAAAGAAAATGAGGAAAGACTGGAAGCTGAAATTGAATCATATCAGTCTAGACTGGCTGCTGCTATAAGAGAACACAATCAAATGGTGACAACAGAAAGAGACCTCAAACTTTCTTTACAGAGAACACAAGAT-G------TTTCTGTACAGATAAACATGAGTTCTG---------AACTAA
i aotNan1.NW_018488791v1       C 0 I 5
s otoGar3.GL873538              19672045 461 -  27850971 TGGCCATGAAAAAGAAGACGACCCATTGCATAAAAATCACATGTTGCAGGATGAAATTGCCATGCTAAGACTGGAAATAGACACGATAAAAATTCAGAACCAGGAAAAGGAAAAGAAATATTTTGAGGACATTGAAATTGTGAAAGAAAAGAATGATGACCTTCAAAGGACTATAAAACTGAATGAGGAAACATTAACAAAAACAATATCCCAGCATAA--TGGACAGCTCAGTGTTCTGACAGCTGAGAATACAATGCTAAATTCTAAATTGGAGAATGAAAAACAGATTAAGGAAAGACTGGAAGCAGAAGTTGAATCATACCGCTCTAGACTGGCTGCTGCTGTACATGATTGTGATCAAAGTCAGACATCAAAAAGAGACCTAGAACTTGCCTTCCAGAGAGCAAGAGAT-GAGTGGTTTCGATTACAAGACAGAATGAATTTTGATTTGTCTAACCTAA
i otoGar3.GL873538             C 0 I 5
s canFam3.chr2                  79131801 461 -  85426708 TACTCATGAAAAAGCAAAAGATCTGTTACATAAAAACCGCATGTTGCAGGATGAAATTGCCATGCTAAGACTGGAAATAGACACAATAAGGAACCAGAATCAGGAAAAGGAAAAGAAATATTGTGAAGACATTGAAATTGAAAAAGAAAAGAATGACAGTCTTCAAAAGACCATAAAACTGAATGAGGTAACATTAACAAATACAGTATTCCAATATAC--TGGACAGCTCAATGTTCTGACAACTGAGAATACAATGCTACACTCTCAACTGGACAATGAAAAGCAAAACAAAGAAAGACTAGAAGCAAAAATTCAATCATACCGAGCTAGACTTGCTACTGCTATACAAGATCATGATCAAAGTCAGGCATCAAAAAGAGACCTAGAACTTGCTTTCCAGAGAGCAAAAGAT-GAGTGGTTTCGTTTACAGGACAAAATGAACTTTGATGTGTCTAACCTAA
i canFam3.chr2                 C 0 I 5
s dasNov3.JH570393               1772271 461 -   2296528 TAGTCATGAAAAAGGAAAAGATCTTTTGCATAAAAATCACATGTTGCAGGATGAAATTGCCATGTTAAAACTGGAAATAGACACAATAAAAAATCACAACCTGGAAAAAGAAAAGAAATATTCTGAGGACTTTGAGATTGTAAAAGAAAAAAATGTTGATCTTCAAAGAACATTAAAACTGAATGAGGAAACATTAACAAAAACAGTATTTCAATATAG--TGGACAGGTGAATGTTCTGACATCAGAGAATGCAGTGCTAAACTCTAAATTAGAAAGTGAAAAACAAAACAAGGAAAGACTGGAAACAGAAGTTGAATCATACCGTTCCAGGCTGGCTGCTGCAATCAATGATCATGATCAATGTCAGACATCAAAAAGAGACTTAGACCTTGCTTTCCAGAGAGCAAGAGAT-GAGTGGTTTCGTATACAGGACAAAATGAATTTTGATGTATCTAACCTCA
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   521596 376 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          411268 610 -    438202 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=654773.000000
s hg38.chr14_GL000009v2_random     35642 68 +    201709 -----AAGAATGAGTTTCTTACT--GAACAACTTTCTAAA--AAGCAAATTAAATT-CAATACCTTA-AAAGATAAGTT
s panTro5.chr9                  41711597 68 + 116767853 -----AAGAATGAGTTTCTTACT--GAACAACTTTCTAAA--ACACAAAATAAATT-CAGTACCTTA-AAAGATAAGTT
i panTro5.chr9                 I 5 C 0
s panPan2.chr13                 96060409 68 - 114479721 -----AAGAATGAGTTTCTTAAT--GAACAACTTTCTAAA--ACACAAATTAAATT-CAGTACCTTA-AAAGGTAAGTT
i panPan2.chr13                I 5 C 0
s gorGor5.CYUI01015896v1           92660 70 -    416926 -----GAGAATGAGTTTCTTACT--GAACAACTTTCTGAAACACACAAGTTAAATT-CAATGCCTTA-AAAGATAAGTT
i gorGor5.CYUI01015896v1       I 5 I 1036
s nomLeu3.chr1a                 40829281 68 + 122973662 -----GAGAATGAGTTTCTTACT--GAACAACTTTTTAAA--ATGCAAATTAAATT-CAATACCTTA-AAAGATAAGTT
i nomLeu3.chr1a                I 5 C 0
s macFas5.chr13                111105843 68 - 111193037 -----AAGAATGAGTTTCTCACT--GAACAACTTTCTAAA--ACGCAAATTAAATT-CAATACCTTA-AAAGATAAGTT
i macFas5.chr13                I 5 C 0
s macNem1.NW_012012823v1          364567 68 +    434444 -----AAGAATGAGTTTCTTACT--GAACAACTTTCTAAA--ATGCAAATTAAATT-AATTACCTTA-AAAGATAAGTT
i macNem1.NW_012012823v1       I 5 C 0
s cerAty1.NW_012002921v1          411878 72 -    438202 -----AAGAATGAGTTTCTTACTGGGAACGACTTTCTAAA--ATGCAAATTAAATTGCAATACCTTAGAAAGATAAATC
i cerAty1.NW_012002921v1       I 610 C 0
s chlSab2.chr2                  66461375 68 +  90373283 -----AAGAATGAGTTTCTTACT--GAACAACTTTCTAAA--ATGCAAATTAAATT-AATTACCTTA-AAAGATAAGTT
i chlSab2.chr2                 I 5 C 0
s manLeu1.NW_012105442v1         1512028 68 -   1547936 -----AAGAATGAGTTTCTTACT--GAACAACTTTCTAAA--ATGCAAATTAAATT-CAATACCTTA-GAAGATAAGTT
i manLeu1.NW_012105442v1       I 5 C 0
s colAng1.NW_012121088v1           27285 68 +    168452 -----AAGAATGAGTTTCTCACT--GAACAACTTTCTAAA--GCGCACATTAAATT-TAATACCTTA-AAAGATAAGTT
i colAng1.NW_012121088v1       I 5 C 0
s calJac3.chr1                 130386972 68 - 210400635 -----AAGAATGAGTTGCTTATG--GAACAACTTTCTAAA--GCTCAGATGAAGCT-CAGTACCTTA-AAAGAGAAGCT
i calJac3.chr1                 I 5 C 0
s saiBol1.JH378105              64657592 68 -  72162052 -----AAGTATGAGTTTCTTAAA--GAAAAACTTTCTAAA--ACACAAATTAAATT-CAATACCTTA-AAAGATAAGGT
i saiBol1.JH378105             I 5 C 0
s cebCap1.NW_016107851v1         1070047 64 +   1314817 ---------ATGAGTTTCTTAAA--GAAAAACTTTCTAAA--ACACAAATTAAATT-CAATACCTTA-AAAGATAAGCT
i cebCap1.NW_016107851v1       I 3 C 0
s aotNan1.NW_018488791v1         6427838 68 -   6597006 -----GAGAATGAGTTTCTTAAA--GAACAACTTTCTAAA--ACACAAATTAAATT-CAATACCTTA-AAAGATGAGTT
i aotNan1.NW_018488791v1       I 5 C 0
s otoGar3.GL873538              19672511 68 -  27850971 -----AACAATGAGATTCTTTCT--CAACAACTTTCTAAG--ACTGAAAGCAAATT-CAATAGCCTA-GAAATTGATCT
i otoGar3.GL873538             I 5 C 0
s canFam3.chr2                  79132267 68 -  85426708 -----AACAATGAGGTGCTTTCT--CAGCAACTTTCTAAA--GCTGAAAGTAAATT-CAATACCCTA-GAAATTGAGCT
i canFam3.chr2                 I 5 C 0
s dasNov3.JH570393               1772732 73 -   2296528 AAGATAACAATGAGATTCTTTCT--CAACAACTTTCTAAA--ACTGAAAGTAAATT-CAATAACCTT-GAAATTGAGCT
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   521596 376 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=526599.000000
s hg38.chr14_GL000009v2_random     35710 58 +    201709 CCGTAAGAACAGAGATACTCTCAGAAAAAAGTCATTGGCTTTAGAAACTCT-CCAAACG
s panTro5.chr9                  41711665 59 + 116767853 CCGTAAGACAAGAGATACTCTCAGAAAAAAGTCATTGGCTTCAGAAACTGTACAAAACG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96060477 59 - 114479721 CCGTAAGACAAGAGATACTCTCAGAAAAAAGTCATTGGCTTCAGAAACTGTACAAAACG
i panPan2.chr13                C 0 C 0
s nomLeu3.chr1a                 40829349 59 + 122973662 CCGTAAGACAAGAGATACTCTCAGAAAAAAGTCACTGGCTTTAGAAACTGTACAAAACG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111105911 59 - 111193037 CCCTAAGACAAGAGATACTCTCAGAACAAAGCCATTGGATTTAGAAACTCTACAAAACG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          364635 59 +    434444 CCGTAAGACAAGAGATACTCTCAGAAAAAAGTCATTGGCTTTAGAAACTGTACACAATG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          411950 59 -    438202 CCGTAAGACAAGAGATACTCTCAGAAAAAAGTCATTGGCTTTAGAAACTGTACACAATG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66461443 59 +  90373283 CTGTAAGACAAGAGATACTCTCAGAAAAACGTCATTGGCTTTAGAAACTGTACAAAACG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1512096 59 -   1547936 CCCTAAGACAAGAGATACTCTCAGAAAAAAGTCATTGGCTTTCGAAACTGTACACAATG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           27353 59 +    168452 CCGTAAGACAGGAGATACTCTCAGAAAAAAGTCATTGGCTTTAGAAACTCTACAAAACG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130387040 59 - 210400635 CCATGAGACAAGAGATGCCCTCAGGGAAAAGACATTGGCTTTAGAAAGTGCACAGAGGG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64657660 59 -  72162052 CTGTAAGACAAGTGATACTCTCAGAGAAAAGACATTGGCTTTAGAAACTGCACAAAACG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1070111 59 +   1314817 CTGTAAGATAAGTGATACTCTCAGAGAAAAGACATTGGCTTTAGAAACTGCACAAAACC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6427906 59 -   6597006 CTGTAAGACAATTGATGCTCTCAGAGAAATGACATTGGCTTTAGAAACTGCACAAAACT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19672579 59 -  27850971 CCATCACACAAGAGATGCTCTCAGAGAAAAGACTTTGGTTTTAGAACGTGTACAAAGAG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79132335 59 -  85426708 GCATCACACAAGAGATGCTCTCAGAGAAAAGACTTTGGCTTTAGAACATGTACAAAGAA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1772805 59 -   2296528 CCATCACACAAGAGATGCTCTGAGAGAAAAGATTTTGACTTTAGAACGTGTACAAAGAG
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   521596 376 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I
e gorGor5.CYUI01015896v1           92730 1036 -    416926 I

a score=3521375.000000
s hg38.chr14_GL000009v2_random     35768 366 +    201709 ACCTAAGCCAAACACAGCAGCAAATAAAGGAAATGAAAGAGATGTATGAAAATGCAGAAGCTAAAGTGAATAATTCCACTGGAAAGTGGAGCTGTGTAGAAGAGAGGATATGTCAACTCCAACATGAAAATCCGTGCATTGAACAGCAACTAGATGATGTTCATCAGAAAGAGGATCATAAAG---AGATAGTAACTAATATCCA----------------------AAGAGGCTTTA--TTGAGAGTGGAAAGAAAGACCACATGCTAGAAGAGAAAAATAAGAAGCTAATGAACGAATGTGATCATTAAAAAGAAAGTCTCTTTCGATATGAGAGAGAGAAAGCAGAAAG-AGTAGTAAGTATCAAGGAAGATAAATA-TTTTCAA-----------------ACTTTTA
s panTro5.chr9                  41711724 362 + 116767853 ACCTAAGCCAAACACAGCAGCAAATAAAGGAAATGAAAGAGATGTATCAAAATGCAGAAGCTAAAGTGAGTAATTCCACTGGAAAGTGGAGCTGTGTAGAAGAGAGGATATGTCAACTCCAACATGAAAATCTGTGCATTGAACAGCAACTAGATGATGTTCATCAGAAAGAGTATCATAAAG---AGATAGTAACTAATATCCA----------------------AAGAGGCTTTA--TTGAGAGTG----GAAAGACCTCGTGCTAGAAGAGAAAAATAAGAAGCTAATGAATGAATGTGATCATTTAAAAGAAAGTCTCTTTCAATATGAGAGAGAGAAAGCAGAAAG-AGTAGTAAGTATCAAGGAAGATAAATA-TTTTCAA-----------------ACTTCTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96060536 362 - 114479721 ACCTAAGCCAAACACAGCAGCAAATAAAGGAAATGAAAGAGATGTATCAAAATGCAGAAGCTAAAGTGAGTAATTCCACTGGAAAGTGGAGCTGTGTAGAAGAGAGGATATGTCAACTCCAACATGAAAATCTGTGCATTGAACAGCAACTAGATGATGTTCATCAGAAAGAGTATCATAAAG---AGATAGTAACTAATATCCA----------------------AAGAGGCTTTA--TTGAGAGTG----GAAAGACCTCGTGCTAGAAGAGAAAAATAAGAAGCTAATGAATGAATGTGATCATTTAAAAGAAAGTCTCTTTCAATATGAGAGAGAGAAAGCAGAAAG-AGTAGTAAGTATCAAGGAAGATAAATA-TTTTCAA-----------------ACTTCTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           93766 356 -    416926 ACCTAAGCCAAACACAGCAGCAAA-ACAGGAAATGAAAGAGATGTATCAAAATGCAGAAGCTAAAGTGAATAATTCCACTGGAAAGT-GAACTGTGTAGAAGAGAGGATATGTC-ACTCCAA-GTGAAAATCTG---GCTTGACAGCAACTAGATGA-GTTCATCAGAAAGAGGATCATAAAG---AGATAGTAACTAATATCCA----------------------AAGAGGCTTTA--TTGAGAGTGGAAAGAAAGACCTCGTGCTAGAAGAG-AAAATAAGAAGCTAATGAATGAATGTGATCATTTAAAAGAAAGTCTCTTTCAATATGAGAGAGAGAAAGCAGAAA--AGTAGTAAGTATCAAGGAAGATAAATA-TTTTCAA-----------------ACTTCTA
i gorGor5.CYUI01015896v1       I 1036 C 0
s nomLeu3.chr1a                 40829408 366 + 122973662 ACCTAAGCCAAACACAGCAGCAAATAAAGGAAATGAAAGAGATGTATCAAAATGCAGAAGCTGAAGTGAGTAAATCCACTGGAAAGTGGAACTGTGTAGAAGAGAGGATATGTCAACTCCAACGTGAAAATCTGTGGCTTGTACAGCAACTAGATGATGTTCATCAGAAAGAGGATCATGAAG---AGATAGTAATTAATATCCA----------------------AAGAGGCTTTA--TTGAGAGTGGAAAGAAAGACCTCCTGCTAGAAGAGAAAAATAAGAAGCGAATGAATGAATATAATTATTTAAAAGAAAGTCTCTTTCAATATGAGAAAGAGAAAACAGAAAG-AGTAGTAAGTACCAAGGAAGATAAATA-CTTTCAA-----------------ACTTCTA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111105970 366 - 111193037 ACCTAAGCCAAACCCAGCAGCAAATAAAGGAAATGAAAGAGATGTATCAAAATGCAGAAGCTAAAGTGAGTAATTCCACTGGAGAGTGGAACTGTGTGGAAGAAAGGATATGTCAACTCCAGCGTGAAAATCTGTGTCTTGAACAGCAACTAGATGATGATCATCAGAAAGAGGATCATAAAG---AGAGAGTAATTAATATCCA----------------------AAGAGGTTCTA--TTGAGAGTGGAAAGAAAGACCTCCTGCTCCAAGAGAAAAATAAGAAGCTAATGAATGACTATGATCATTTAAAAGAAAGTCTCTTTCTATATGAGAGAGAGAAAGCAGAAAG-AGTAGTAAGTATCAAGGAAGAGAAATA-TTTTCAA-----------------ACTTCTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          364694 366 +    434444 ACCTAAGCCAAACACAGCAGCAAATAAAGGAAATGAAAGAGATGTATCAAAATGCAGAAGCAAAAGTGAGTAAATCCACTGGAAAGTGGAACTGTGTAGAAGAGAGGATATGTCAACTCCAACGTGAAAATCTGCGGCTTGAACAGCAACTAGACGATGTTCATCAGAAAGAGGATCATCAAG---AGATAGTAATTAATATCCA----------------------AAGAGGCTCTA--TTGAGAGTGGAAAGAAAGACCTCCTGCTAGAAGAGAAAAATAAGAAGCGAATGAATGAATATAATCATTTAAAAGAAAGTGTCTTTCAGTATGAGAAAGAGAAAACAGAAAG-AGTAGTAAGTGTCAAGGAAGATAAATA-CTTTCAA-----------------ACTTCTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          412009 362 -    438202 ACCTAAGCCAAACACAGCAGCAAATAAAGGAAATGAAAGAGATGTATCAAAATGCAGAAGCAAAAGTGAGTAAATCCACTGGAAAGTGGAACTGTGTAGAAGAGAGGATATGTCAACTCCAACGTGAAAATCTGCGGCTTGAACAGCAACTAGACGATGTTCATCAGAAAGAGGATCATCAAG---AGATAGTAATTAATATCCA----------------------AAGAGATTCTA--TTGAGAGTGGAAAGAAAGACCTCCTGCTAGAAGAGAAAAATAATAAGCGAATGAATGAATATAATCATTTAAAAGAAAGTGTCTTTCAGTATGAGAAAGAGAAAACAGAAAG-AGT----AGTGTCAAGGAAGATAAATA-CTTTCAA-----------------ACTTCTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66461502 381 +  90373283 ACCTAAGGCAAACACAGCAGCAATTAAAGGAAATGAAAGAGATGTATCGAAATGCAGAAGCTGAAGTGAGTAAATCCACTGGAAAGTGAAACTGTGTAGAAGAGAGGATACGTCAACTCCAACGTGAAAATCTGAGGCTTGAACAGCAACTAGATGATGTTCATCAGAAAGAGGATCATCAAG---AGATAGTAATTAATATCGA----------------------AAGAGGCTCTA--TTGAGAGTGGAAAGAAAGACCTCCTGCTAGAAGAGAAAAATAAGAAGCGAATGAAAGAATATAATCATTTAAAAGAAAGTGTCTTTCAGTATGAGAAAGAGAAAACAAAGAGTAGT---AAGTGTCAAGGAAGATAAATA-CTTTCAAAGAAATATTCTAGAAATACTTCTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1512155 358 -   1547936 ACCTAAGCCAAACACAGCAGC----AAATGAAATGAAAGAGATGTATCAAAATGCAGAAGCAAAAGTGAGTAAATCCACTGGAAAGTGGAACTGTGTAGAAGAGAGGATATGTCAACTCCAACGTGAAAATCTGCGGCTTGAACAGCAACTAGACGATGTTCATCAGAAAGAGGATCATCAAG---AGATAGTAATTAATATCCA----------------------AAGAGGCTCTA--TTGAGAGTGGAAAGAGAGACCTCCTGCTAGAAGAGAAAAATAAGAAGCGAATGAATGAATATAATCATTTAAAAGAAAGTGTCTTTCAGTATGAGAAAGAGAAAACAGAAAG-AGT----AGTGTCAAGGAAGATAAATA-CTTTCAA-----------------ACTTCTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           27412 366 +    168452 ACCTAAGCCAAACCCAGCAGCAAATAAAGGAAATGAAAGAGATGTATCAAAATGCAGAAGCTAAAGTGAGTAATTCCACTGGAGAGTGGAACTGTGTGGAAGAAAGGATATGTCAACTCCAGCGTGAAAATCTGTGGCTTGAACAGCAACTAGATGAGGTTCATCAGAAAGAGGATCATAAAG---AGATAGTAATTAATATCCA----------------------GAGAGGTTCTA--TTGAGAGTGGAAAGAAAGACCTCCTGCTAGAAGAGAAAAATAAGAAGCTAATGAATGACTATGATCATTTAAAAGAAAGTCTCTTTCAATATGAGAGAGAGAAAGCAGAAAG-AGTAGTAAGTATCAACGAAGAGAAATA-TTTTCAA-----------------ACTTCCA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130387099 366 - 210400635 ACCTAAGGCAAAAGCTGGATCGAATAAAGGACATGGAGCAGATGCATCTAAATGAGGAAGCTAAAGAGAGTCAGTTCATTGGAAAGCAGAACTGGATAGAGGAGAGAATACATCAAGTAGAATGTGAAAATCTCTTGCTTGAACAACTACTAGAGGCTAATTGTGAGGAAGGCAATAATGAAA---AGATAGTACTTAATACCCA----------------------AGGAGGCTCTC--CTGAGAGTGGAAAGGAAGGTCTTCTTCTAGAAGAGAAAAATAAAGAATCAATGAATGAATATAATTATTTAAAAGAAAAAGTGTTTCAGTATGAAAAAGAAGAAGCAGAAAT-AAAAGTAAGTATGAAGAAAGAGAAATA-TTTTTAA-----------------CCTTCTG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64657719 360 -  72162052 ACTTAAGCCAAACACAGCAGCAAATAAAGGAAATGAAAGAGATGTATCAAAATGCAGATGCTAAAGTGAGTAAATCCACTGGAGAGTGGAACTATGTAGAAGAGAGACTATGTGAACTACAACGTAAAAATCTGTGGCTTAAACAGCAACTAGATGATGCTTATCAGAAAGGGGATAATGAAG---AGAGAGTAATTAATATCCA----------------------AGGAGGATTTA--TTGAGAGTGGAAAGAAAGGTCTTCTTCTAGAAGAGAAAAATAAGAAGTTAATGAACGAATGTAATCATTTAAAAGAACGTCTGTTTCAACATGAGAAAGAGAAAGCAG-------AAGTAAGTATCAAGGAAGATAAATA-TTTTCAA-----------------ACTTTTG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1070170 360 +   1314817 AACTAAGACAAACACAGCAGCAAATAAAGGAAATGAAAGAGATGTATCAAAATGCAGATGCTAAAGTGAGTAAATCCACTGGAAAGCGGAACTATGTAGAAGAGAGAATATGTGAACTACAACGAAAAAATCTGTGGCTTAAACAGCAACTAGATGATGCTTATCAGAAAGGGGATAATGAAG---AGACAATAATTAATATCCA----------------------AGGAGGCTTTT--TTGAGAGTGGAAAGAAATGTCTTCTGCTAGAAGAGAAAAATAAGAAGTTAATGAATGAATGTAGTCGTTTAAAAGAACGTCTGTTTCAACATGAGAAAGAGAAAGCAG-------TAGTAAGTATCAAGGAAGATAAATA-TTTTCAA-----------------ACTTCTG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6427965 366 -   6597006 ACCTAAGCCAAACACAGCAGCAACTAAAGGAAATGAAAGAGATGCATCAAAATGCAGTTGCTAAAGTGAATAAATCCACTGGAAAGCAGAACCATGTAGAAGAGAGAATATATGAATTACAACATGAAAGTCTGTGGCATAAACAGCAACTAGATGATGCTCATCAGATAGCGGATAATAGAA---AGATAGTAATTAATATCCA----------------------AGGAGACTTTA--TTGAGAGTGGGAAGGAAGGTCTTCTGCTAGAAGAAAAAAATAAGACGTTAATGAAAAAATGTAATCATTTAGAAGAACGTCTGTTTCAACATGAGAAAGAGAAAGCAGAAGG-AGAAGTAAGTATCAAGGAAGATAAATA-CTTTCAA-----------------ACTTCTG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19672638 394 -  27850971 ACCTTAGCCAAACCCAGAGTCAAATGAAGGAAATTGAACAGATGTATCAAGAAGAACAAGGTAAAGTGAATAAATACATTGGAAAACAGGAATCTGTAGAGGAGAGATTATCTCAACTACAAAGTGAAAATATGTTGCTTCGACAGCAACTGGATGATGCTCAGAACAAAGCTGATAGTAAAGAAAAGACAGTAATTAATATCCAGGACCAATTTCATGCTATAGTGGAAAAACTTCAAGCTGAAAGTGAAAAGCAAAGTATTCTGCTAGAAGAAAGAAATAAAGAATTAATCAGTGAATGCAATCATTTAAAAGAAAGACAGTATCAATACGAAAATGAGAAAGCAGAAAG-AGAAGTAAGTATCAAGGAAGAGAAATAGTTTTCAA-----------------ACTTCCT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79132394 394 -  85426708 ACCTAAAACAAACCCAGTGTCAGAAGAAGGAAATTGAACAGAAGTATCAAAATGAGCAAAGTAAAGTGAATAAATACTTTGGAAAGCAGGGATCCTTAGAAGAGAGATTATCTCAACTACAAAGTGAAAATATGTTGCTCCGACAGCAAATAGATGATGCCTACAGCAAAGTTGACTGTAAAGAAAAGACTGTAATTGATATCCAAGACCAGTTTCAGGTTATTGTAAGAAATCTTCAAGCTGAAAGTGAAAAACAAAGTGTTATACTGCAAGAAAGAAATAAGGAGTTAATCACTGAATGTAACCATTTAAAAGAAAGAATATATAAGTATGAGAAGGAGAAAGAAGAAAG-GGAAGTAAGTATTCAGAAAGACAAATATTTTTCAA-----------------GCTTCCT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1772864 390 -   2296528 ACCTAAGCCACACACAGTGTCAAATGAAGGAAATCGAACACATGTATCAAAATGAACAAGGTAAAGTGAATAAATACATTGGAAAACAGGAATCCTTAGAGGAAAGGTTATCCCAACTACAGAGTGAAAATATGTTACTTCGGCAACAACTGGATGATGCTCACAACAAAGCTGACAATAAAGAAAAGACAGTAATTAATATTCAAGACCAATTTCAGGATATAATAAAAAATCTTAAAGCCGAAAGTGAAAAACAAAGTCTTCTGCTGGAAGAGAGAAATAAGGAGTTAATCAATGAATGTAATCATTTAAAGGACCGACTGTATCAGTATGAAAATGAGAAAGCAGAAAG-AGAAGTAAGTATCAAGAAATATAAACC-TTT---A-----------------ACTTCCT
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   521596 376 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=494612.000000
s hg38.chr14_GL000009v2_random     36134 47 +    201709 GAAAGAAAATTTA----AACATTTGGTTCTGGATACATGTTGAACTTAGTT
s panTro5.chr9                  41712086 47 + 116767853 GAAAGAAAATTTA----AACATTTGGTTCTGGATACATGTTGAACTTAGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96060898 47 - 114479721 GAAAGAAAATTTA----AACATTTGGTTCTGGATACATGTTGAACTTAGTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           94122 47 -    416926 GAAAGAAAATTTA----AACATTTGGTTCTGGATACATGTTGAACTTAgtt
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40829774 47 + 122973662 GAAAGAAAATTTA----AACATTTGGTTCTGGATACATGTTGTACCTAGTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   521972 47 - 111343173 GAAAGAAAATTTA----AACATTTCATTCTGGCTATATGTTTAACCTAGTT
i rheMac8.chr15                I 376 C 0
s macFas5.chr13                111106336 47 - 111193037 GAAAGAAAATGTA----AACATTTGGTTCTGGATACATGTTGAACCTAGTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          365060 47 +    434444 GAAAGATAATTTA----AACATTTGGTTCTGGATACATGTCGAACCCAGTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          412371 47 -    438202 GAAAGATAATTTA----AACATTTGGTTCTGGATACATGTTGAACCTAGTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66461883 47 +  90373283 GAAAGATAATTTA----AACATTTGGTTCTGGATACATGTTGAACCTAGTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1512513 47 -   1547936 GAAAGATAATTTA----AACATTTGGTTCTGGATACATGTCGAACCCAGTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           27778 47 +    168452 GAAAGAAAATTTA----AACATTTGGTTCTGGATACATGTTGAACCTAGAT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130387465 47 - 210400635 GAAAGAAAATGTA----AACGTTTCATTTTGGCTATATGTTGAATCTAGTT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64658079 47 -  72162052 GAAAGAACATTTA----AACATTTGGTTCTGAATACATGTTGAACCTGGTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1070530 47 +   1314817 GAAAGAACATTTC----AACATTTGGTTCTGAATACGTGTTGAACCTGGTT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6428331 47 -   6597006 GAAAGAACATGTA----AACATTTGGTTCTGAATACATGTTGAACCTGgtt
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19673032 38 -  27850971 GAAAGAAAA--------AA----TGGTTATGAATAAATGTTGAGTC-AGTG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79132788 51 -  85426708 GAGAGAAAATTCAAAGTAATGCTTGATTATGGcttcttcttcttcttcttc
i canFam3.chr2                 C 0 I 171
s dasNov3.JH570393               1773254 51 -   2296528 GAGAGAAAATACAGAGTAATATTTGGTTATGACTAAATGTTAAGCCTAGCT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=84544.000000
s hg38.chr14_GL000009v2_random     36181 11 +    201709 GAA---TATAAAAA
s panTro5.chr9                  41712133 11 + 116767853 GAA---TATAAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96060945 11 - 114479721 GAA---TATAAAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           94169 11 -    416926 gaa---tataaaaa
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40829821 11 + 122973662 GAA---TACAAAAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   522019 11 - 111343173 AAA---TATAAAAA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111106383 11 - 111193037 GAA---TATAAAAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          365107 11 +    434444 GAA---TATAAAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          412418 11 -    438202 GAA---TATAAAAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66461930 11 +  90373283 GAA---TATAAAAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1512560 11 -   1547936 GAA---TATAAAAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           27825 11 +    168452 GAA---TATAAAAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130387512 13 - 210400635 CAATATTAAAAAG-
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64658126 10 -  72162052 GAA---TAAAAAG-
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1070577 10 +   1314817 GAA---TAAAAAG-
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6428378 10 -   6597006 gaa---taaaaag-
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19673070 11 -  27850971 GAA---TATAAAAA
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1773305 11 -   2296528 GAA---AATGAAAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79132839 171 -  85426708 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=199851.000000
s hg38.chr14_GL000009v2_random     36192 24 +    201709 TCAATGGA-T--AAAAAGTGTGTTTAC
s panTro5.chr9                  41712144 25 + 116767853 TCAATAGATT--AAAAAGTGTGTTTAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96060956 24 - 114479721 TCAATGGA-T--TAAAAGTGTGTTTAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           94180 22 -    416926 tc--taga-t--aaaaagtgtgtttac
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40829832 24 + 122973662 TCAATAGA-T--AAAAAGTGTGTTTAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   522030 23 - 111343173 TAAATAGA-T--GAAAA-TGTGTTTAC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111106394 24 - 111193037 TCAATAGA-T--GAAAAGTGTGTTTAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          365118 24 +    434444 TCAATAGA-T--AAAAAGTGTGTTTAC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          412429 24 -    438202 TCAATAGA-T--AAAATGTGTGTTTAC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66461941 24 +  90373283 TCAATAGA-T--AAAAAGTGTGTTTAC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1512571 24 -   1547936 TCAATAGA-T--AAAAAGTGTGTTTAC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           27836 24 +    168452 TCAATAGG-T--GAAAAGTGTGTTTAC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130387525 23 - 210400635 TAAATAGA-T--GG-AAGTGTGTTTAT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64658136 22 -  72162052 --AATAGA-T--AATAAATATGTTTAC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1070587 22 +   1314817 --AATAGA-T--AAAAAATATGTTTAC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6428388 24 -   6597006 --aataga-ttaaaaaaatatgtttac
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19673081 24 -  27850971 TAAATAGA-T--GATAAATGTATCTAC
i otoGar3.GL873538             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79132839 171 -  85426708 I
e dasNov3.JH570393               1773316  0 -   2296528 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=373845.000000
s hg38.chr14_GL000009v2_random     36216 42 +    201709 catactgtataattccatttacatgaagcatccagaaaagat
s panTro5.chr9                  41712169 41 + 116767853 catactgtataattgcatttacatgaagcatccagaaaa-at
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96060980 42 - 114479721 catacggtataattccatttacatgaagcatccagaaaagat
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           94202 42 -    416926 catactgtataattccatttacatgaagcatccagaaaagat
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40829856 42 + 122973662 catagtgtataattccatttacatgaaacatccagaaaagat
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   522053 40 - 111343173 Tatactgtataattccatttgtattaatcatccaggaa--at
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111106418 42 - 111193037 catattgtataattccatttacgtgaagcatccaaaaaagag
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          365142 42 +    434444 catactgtataattccatttacatgaaacttctagaaaagat
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          412453 42 -    438202 catactgtataattccatttacatgaaacatctagaaaagat
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66461965 42 +  90373283 catactgtataattccatttacatgaaacatctagaaaagat
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1512595 42 -   1547936 catactgtataattccatttacatgaaacatctagaaaagat
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           27860 42 +    168452 catactgtgtaattccatttacatgaagcatccaaaaaagag
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130387548 42 - 210400635 catactgtataattccagttacatgaaacatccagaaaagac
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64658158 42 -  72162052 catactgtataattgcatttacatgaaacatgcagaaaagat
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1070609 42 +   1314817 CATTCTGTATAATTGCATTTACATGAAACACGCAGAAAAGAT
i cebCap1.NW_016107851v1       C 0 I 95
s aotNan1.NW_018488791v1         6428412 42 -   6597006 catactgtataattgcatttacatgaaacatgcagaaaagat
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79132839 171 -  85426708 I
e otoGar3.GL873538              19673105  0 -  27850971 C
e dasNov3.JH570393               1773316  0 -   2296528 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=112966.000000
s hg38.chr14_GL000009v2_random     36258 16 +    201709 aaacgtatagggacaa
s panTro5.chr9                  41712210 16 + 116767853 aaacgtatagggacaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96061022 16 - 114479721 aaacgtatggggacaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           94244 16 -    416926 aaatgtatagggacaa
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40829898 16 + 122973662 aaatgtataggaacaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   522093 16 - 111343173 acatgtataggaacag
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111106460 16 - 111193037 aaacgtatagggacat
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          365184 16 +    434444 aaatgtatagggacaa
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          412495 16 -    438202 aaatgtatagggacaa
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66462007 16 +  90373283 aaatgtatagggacaa
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1512637 16 -   1547936 aaatgtatagggacaa
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           27902 16 +    168452 aaacgtatagggacat
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130387590 14 - 210400635 --gtctataggaacag
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64658200 16 -  72162052 agatatacagagacag
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6428454 16 -   6597006 aaatacatagagacag
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79132839 171 -  85426708 I
e otoGar3.GL873538              19673105  0 -  27850971 C
e dasNov3.JH570393               1773316  0 -   2296528 C
e cebCap1.NW_016107851v1         1070651 95 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1419545.000000
s hg38.chr14_GL000009v2_random     36274 182 +    201709 aaagtagactaatgtttgcaaagggctggggctgaaagctggtagtgactgctaatgggcgtcaggga---tcttgcagtgatgg--aaatgctgtaaagtttgattgtagagatggctgcacaactc-agtaaatggactaaaaattcttttaac-tttaagttaaaacagatacattctatagtatg
s panTro5.chr9                  41712226 181 + 116767853 aaagtagattaatgtttgcaaagggctgggactggaagctggtagtgactgctaatgggcgtgaggga---tcttgcagtgatgg--aaatgctgtaaagttggattgtagagatggctgcacaactc-agtaaatggactaaaaa-tcttttaac-tttaagttaaaacagatacattctatagtatg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96061038 181 - 114479721 aaagtagattaatgtttgtaaagggctggggctggaagctggtagtgactgctaatgggcgtgaggga---tcttgcagtgatgg--aaattctgtaaagttggattgtagagatggctgcacaactc-agtaaatgtactaaaaa-tcttttaac-tttaagttaaaacagatacattctatagtatg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           94260 177 -    416926 aaagtagattaatgtttgt-gagggctggg-ctggaagctggtagtgactgctaatgggcatgaggaa---tctt-cagtgatgg--aaatgctctaaagttggattgtagagatggctgcacaactc-agtaaatgtactaaaa--tcttttaac-tttaagttaaaacagatacattctatagtatg
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40829914 181 + 122973662 aaagtagattaatgtttgtgaagggctggggctggaagctggtagtgactgctaatgggcttgaggga---tcttgcagtgatgg--aaatgctctaaagttgcattgtagagatggctgcacaactc-agtaaatttactaaaaa-tcttttaac-ttcatgttaaaacagatacattctatagtatg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   522109 177 - 111343173 aaagaagattaatgtttgtgtaggcctggggctggaaatgggtggtgactgctaatgggcatgagggattgtcctgcagtgatga--aaatgttctaaagttgaattgtagagatggttgcacgacac-agtaaagttactaaaaa-tctttgaac-tgcttgttaaaataga-------taaattcta
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111106476 173 - 111193037 aaagtagattactgtttgcgaggggctggggctggaagctggtaatgaccgctaaagggcgtgaggga---tcttgcagtgatgg--aaatgctctaaagttggattgtagagatggctgcacaactt-agtaaatgtactaaaac-tcgtttaac--ttaagttaaaacaga-------tgtagtatg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          365200 176 +    434444 aaagtagattaatgtttacaaaggg-tggggctggaagctggtagtgactgctaatgggtatgaggga---tcgtgcagtgatgg--aaatgctctaaagttgggttgtagagatggctgcacaactc-agtaaatttactaaaaa-tcttttaac-tttatgttaaaacaaa----ttctatagtatg
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          412511 176 -    438202 aaagtagattaatgtttacaaaggg-tggggctggaagctggtagtgactgctaatgggtaggaggga---tcgtgcagtgatgg--aaatgctctaaagttggattgtagagatggctgcacaactc-agtaaatttactaaaaa-tcttttaac-tttatgttaaaacaaa----ttctatagtatg
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66462023 177 +  90373283 aaagtagattaatgtttacaaaggg-tggggctggaagctggtagtgactgctaatgggtatgaggga---ttgtgcagtgatgg--aaatgctctaaagttgggttgtagagatggctgcacaactcaagtaaatttactaaaaa-tcttttaac-tttatgttaaaacaaa----tactatagtttg
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1512653 176 -   1547936 aaagtagattaatgtttacaaagag-tggggctggaagctggtagtgactgctaatgggtaggaggga---tcgtgcagtgatgg--aaatgctctaaagttggattgtagagatggctgcacaactc-agtaaatttactaaaaa-tcttttaac-tttatgttaaaacaaa----ttctatagtatg
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           27918 173 +    168452 aaagtagattaatgtttgcgaagggctggggctggaagctggtaatgaccgctaaagggtgtgaggga---tcttgcagtgatgg--aaatgctctaaagttggattgtagagatggctgcacaactc-agtaaatgtaccaaaac-tcgtttaac--ttaagttaaaacaga-------tatagtatg
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130387604 177 - 210400635 aaagtagattaatttct--gttgg---agggctggaaatgggtagtgactactaatgggcatgaggga---ttgtcctggactgaagaaatgttctaaagttggatggtagagatggttgcacaactc-agtaaatttagtaaaca-tctttgaac-tgtatgtgaaaacataaat-ttttatagtatg
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64658216 182 -  72162052 aaagtagatgaatgtttgcgtagggctggggctggaagctagtagtgactgctaatgggtgtgagggg---tctttcagtggtga--aaagcttctgaagccggattgtagagctagctgcacaactc-ggtcaatttactaaaaa-ccttctaacttttatgttgaaacagatatattctatagtagg
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1070746 177 +   1314817 aaagtagacgaatgtttgtgcagggctggggctggaagctggtggtgactgctaacgggcataagggg---tcttgcagtgatgg--aaagcctctgaagctgcattgtagagataactgcacaactc-----aatttactaaaaa-ccttctaac-tttatgttgaaacagatacattctatagtatg
i cebCap1.NW_016107851v1       I 95 C 0
s aotNan1.NW_018488791v1         6428470 181 -   6597006 aaagtagatgaatgtttgcatagggctggggctggaagctggtagtgactgctaatgggtgtgagggg---tcttgcagtgatgg--gaagcctctgaagttggattgtagagatggctgcacaactc-agtcaatttactaaaaa-ccttctaat-tttatgttgaaacagatacattcgatagtatg
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79132839 171 -  85426708 I
e otoGar3.GL873538              19673105   0 -  27850971 C
e dasNov3.JH570393               1773316   0 -   2296528 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=236610.000000
s hg38.chr14_GL000009v2_random     36456 28 +    201709 taaattatatttcaacaaagctgtttta
s panTro5.chr9                  41712407 28 + 116767853 taaactatatttcaacaaagctgtttta
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96061219 28 - 114479721 taaactatatttcaacaaagctgtttta
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           94437 28 -    416926 taaattatatttcaacaaagctgttTTA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40830095 27 + 122973662 taaattatatttcaacaaaact-tttTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   522286 28 - 111343173 taaatcatatttcaacaaaactgttTTA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111106649 28 - 111193037 taaatgatatttcaacaaagctgttTTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          365376 27 +    434444 taaattatatttcaataaagct-tttta
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          412687 27 -    438202 taaattatatttcaataaagct-tttta
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66462200 27 +  90373283 taaattatatttcaataaagct-tttta
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1512829 27 -   1547936 taaattatatttcaataaagct-tttta
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           28091 28 +    168452 taaatgatatttcaacaaggctgttTTA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130387781 28 - 210400635 taaattatagttcaacaaagcttttttt
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64658398 28 -  72162052 taaattacattttgacaaatctgtttta
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1070923 28 +   1314817 taaattatatttcaacaaagctgtttta
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6428651 28 -   6597006 taaattatatttcaacaaagctgcttta
i aotNan1.NW_018488791v1       C 0 C 0
s dasNov3.JH570393               1773316 12 -   2296528 TAGACTATATTT----------------
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79132839 171 -  85426708 I
e otoGar3.GL873538              19673105  0 -  27850971 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=90637.000000
s hg38.chr14_GL000009v2_random     36484 27 +    201709 ataaaaa----------------------AAAAGGAAAACCGTGTTTAC
s panTro5.chr9                  41712435 25 + 116767853 at--aaa----------------------aaAAGGAAAAATGTGTTTAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96061247 25 - 114479721 at--aaa----------------------aaAAGGAAAAATGTGTTTAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           94465 25 -    416926 AT--AAA----------------------AAAAGGAAAAATGTGTTTAC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40830122 25 + 122973662 GT--AAA----------------------AGAAGGAAAAATGTGTTTAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   522314 25 - 111343173 AT--AAA----------------------AAACCAAAAAAAGTGTTTAC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111106677 32 - 111193037 AT--AAGAAAA---------------CATAAAAGGCAAAATGTGTTTAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          365403 26 +    434444 aT--AAAA---------------------AAAAGAAAAAATGTGTTTAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          412714 27 -    438202 aT--AAAAA--------------------AAAAGAAAAAATGTGTTTAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66462227 26 +  90373283 at--taaa---------------------aaAAGGAAAAATGTGTTTAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1512856 26 -   1547936 aT--AAAA---------------------AAAAGGAAAAATGTGTTTAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           28119 29 +    168452 AT--AAGAAAG------------------CAAAGGCAAAATGTGTTTAC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130387809 47 - 210400635 tt--aaTTCAACCCCTTCCCCCCCCCCCCAAAAAAAAACCTGCGTTTAC
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64658426 29 -  72162052 at--ttttaaa------------------aAAAGGAAAAATGTGTTTAC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1070951 36 +   1314817 at--aaaaaaA-----------CAAAAAAAAAAGGCAAAATGTGTTTAC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6428679 35 -   6597006 at--aaaAAAA------------CAAAAAAAAAGGAAAAATGTGTTTAC
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79133010 19 -  85426708 -------------------------ATAAAAAATATAGAGAGTG-----
i canFam3.chr2                 I 171 C 0
s dasNov3.JH570393               1773328  8 -   2296528 -----------------------------------------GTATTTTC
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19673105  0 -  27850971 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=3911809.000000
s hg38.chr14_GL000009v2_random     36511 399 +    201709  
s panTro5.chr9                  41712460 403 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96061272 403 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           94490 396 -    416926  
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40830147 405 + 122973662  
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   522339 420 - 111343173  
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111106709 398 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          365429 406 +    434444  
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          412741 406 -    438202  
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66462253 406 +  90373283  
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1512882 404 -   1547936  
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           28148 408 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130387856 411 - 210400635  
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64658455 415 -  72162052  
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1070987 396 +   1314817  
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6428714 400 -   6597006  
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19673105 419 -  27850971  
i otoGar3.GL873538             C 0 I 229
s canFam3.chr2                  79133029 420 -  85426708  
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1773336 377 -   2296528  
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2717591.000000
s hg38.chr14_GL000009v2_random     36910 282 +    201709 ATG---------T------CAAATTACATATTTTTATGACTATGTA-----------------ATGTTTTAAAGGCACCTA-CTTGTTATAAAATCATAATTTAGGATACATGTGGTAAT-ATTTAGCAAAACTATATTTGGTTTAGTCTTCCCACT----GGTATTTATAGTTTACTTTGAATATTTAT-ATTAATAATTAGCTCCTAA----TTTTTATTTCAAGGCTTAA-TGACTATCATTGGAATATAATTTTGTTCAGTACAAAGATAC-TTGTAGCTGCCTGTGATT-TATGAG-TAAGGCAT-TAG-ATCCCTATTTTCAGAC
s panTro5.chr9                  41712863 278 + 116767853 ATG---------T------CAAATTACGTATTTTTAAGACTACGTA-----------------ATGTTTTAAAGGCACCTA-CTTGTCATAAAATCATAATTTAGGATAAATGTGGTAAT-AATTAGCAAAAGTATATTTGGTTTAGTCTTCCCACT----GGTATTTATTGTTTACTTTGA----CTAT-GTTAATAATTAGCTCATAA----TTTTTATTGCGAGGCTCAA-TGAGTATCATTGGAATATAATTTTGTTCAGTACAAAGATAC-TTGTAGTTGCCTGTGATT-TATGAG-TTAGGCAT-TAG-ATCCCCATTTTCAGAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96061675 278 - 114479721 ATG---------T------CAAATTACGTATTTTTAAGACTACGTA-----------------ATGTCTTAAAGGCACCTA-CTTGTCATAAAATCATAATTTAGGATAAATGTGGTAAT-AATTAGCAAAAATATATTTGGTTTAGTCTTCCCACT----GGTATTTATTGTTTACTTTGA----CTAT-GTTAATAATTAGCTCATAA----TTTTTATTGCGAGGCTCAA-TGAGTATCATTGGAATATAATTTTGTTCAGTACAAAGATAC-TTGTAGTTGCCTGTGATT-TATGAG-TTAGGCAT-TAG-ATCCCCATTTTCAGAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           94886 282 -    416926 ATG---------TCA----CAAATTACATATTTTTATGACCACGTA-----------------ATGTTTTAAAGGCACCTA-CTTGTTATAAAATCATAATTTAGGATAAATGTGGTAAA-ACTTAGCAAAACTATATTTGGTTTAGTCTTCCCACT----GGtatttatagtttactttgaatatttat-attaataattagctcataa----tttttatttCAAGGCTCAA-TGACTATCATTTGAATATAATTTTGTTCAGTACAAAGATAC-TTGTAGCTGCCTGTGATT-TATGAG-TTAGGCAT-TAA---TCCCATTTTCAGAC
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40830552 289 + 122973662 ATG---------TCAGTCTCAAATTACATATTTTTATGACCACGTA-----------------ATGTTTTAAAGGCACCTA-ATTGTTATAAAATTATAATTTAGGGTAAATGTGGTAAA-TTTCAGCAAAGCCATGTTTGATTTGGTCTTCCCACT----GGTATTCATAATTTACTTTGAATATGTTT-ATTAATAATTAGCTCATAA----TTTTTATTTCAAGGCTCAA-TGACTGTCATTTGAATATAACTTTGTCCAGTACAAAGATATACTGTAGCTGCCTGTGATT-TATGAG-TTAGGCAT-TAG-ATCCCCATTTTCAGAC
i nomLeu3.chr1a                C 0 I 4
s rheMac8.chr15                   522759 292 - 111343173 AGGT---CAGTCT------CACATTATGCATTTTTCTGACCACTTA-----------------GAATTTTAAAGACATCTA-CTTGCTATAAAATCACAATTTGGAATAAATGTGGTAAA-TTTTAGCCAAAAAAATTTTGATGTAATGTTCCCACTGGTAGGTATTTATAATTTACTGTCAATATTTTT-ATGAATAATTAGCTCATAA----TTTACATTTTAAGTCTCAA-TGACTATCATTTGGACATAACTCTTTCCAGTACAAAGATAC-TTGTAACTGTCTGTGATT-TATGAG-TTTGACAT-TGA-ATCCCCATTTTCAGAC
i rheMac8.chr15                C 0 I 3
s macFas5.chr13                111107107 281 - 111193037 ATG---------T------CAAATTACATATTTTTATGACCACATA-----------------ATGTTTTAAGGGCACCTA-CTTGTTATAAAATCATAATTTAGGATAAACGTGGTAAA-TTTTAGCAAAACCGTATTTGGTTTAGTCTTCCAACT----GGAATTTATAGTTTACTTTGAATATTTTT-ATTAATAATTAACTCATAA----TTTTTATTTCAAAGCTCAA-TGACTATCATTTGAATATAACTTTGTCCAGTACAAAGATAC--TATAGCTGCCTGTGATT-TATGAG-TTAGGCAT-TAG-ATCCCCATTTTCAAAC
i macFas5.chr13                C 0 I 3
s macNem1.NW_012012823v1          365835 285 +    434444 GTG-----AGTCT------CAAATTACGTATTTTTATGACCACATA-----------------GTGTTTTAAAGGCACCTA-CTTGTTATAAAATTACAATTTAGGATAAATGTGGTAGA-TTTTAGCAAAACCATATTTGATTTGGTCTTCCCACT----GGAATTTATAATTTACTTTGAATATTTTT-ATTAATAATTAACTCATAA----TTTTTATTTCAAAGCTCAA-TGACTATCATTTGAATATAACTTTGTCCAGTACAAAGATAC--TATAGCTGCCTGTGATT-TATGAG-TTAGGCAT-TAG-ATTCCCATTTTCAGAC
i macNem1.NW_012012823v1       C 0 I 3
s cerAty1.NW_012002921v1          413147 288 -    438202 GTG-----AGTCT------CAAATTACGTATTTTTATGACCACATA-----------------GTGTTTTAAAGGCACCTA-CTTCTTATAAAATTACAATTTAGGATAAATGTGGTAGA-TTTTAGCAAAACCATATTTGATTTGGTCTTCCCACT----GGAATTTATAGTTTACTTTGAATATTTTT-ATTAATAATTAGCTCATAA----TTTTTATTTCAAGACTCAA-TGACTATCATTTGAATATAACTTTGTCCAGTACAAAGATAC--TGTAGCTGCCTGTGATTGTATGAGTTTAGGCATGTAG-ATCCCATTGCTCAAGA
i cerAty1.NW_012002921v1       C 0 I 5
s chlSab2.chr2                  66462659 282 +  90373283 GTC-----AGTCT------CAAATTACGTATTTTTATGAGCACATA-----------------TTGTTTTAAAGGCACCTA-CTTGTTATAAAATTATAATTTAGGATAAATGTGATAGATTTTTAGCAAAACCATATTTGATTTGGTCTTCCCACT----GGTATTTATAATTTACTTTGAATATTTTT-ATTAA----TAGCTCATAA----TTTTTATTTCAAGACTCAA-TGACTATCATTTGAATATAACTTTGTCCAGTACAAAGATAC--TTTAGCTGCCTGTGATT-TATGAG-TTAGGCAT-TAG-ATCCCCATTTTCAGAC
i chlSab2.chr2                 C 0 I 3
s manLeu1.NW_012105442v1         1513286 285 -   1547936 GTG-----AGTCT------CAAATTACGTATTTTTATGACCACATA-----------------GTGTTTTAAAGGCACCTA-CTTGTTATAAAATTACAATTTAGGATAAATGTGGTAGA-TTTTAGCAAAACCATATTTGATTTGGTCTTCCCACT----GGAATTTATAGTTTACTTTGAATATTTTT-ATTAATAATTAGCTCATAA----TTTTTATTTCAAGACTCAA-TGACTATCATTTGAATATAACTTTGTCCAGTACAAAGATAC--TGTAGCTGCCTGTGATT-TATGAG-TTAGGCAT-TAG-ATCCCCATTTTCAGAC
i manLeu1.NW_012105442v1       C 0 I 3
s colAng1.NW_012121088v1           28556 285 +    168452 GTC-----AGTCT------CAAATTACGTATTTTTATGACCACATA-----------------ATGTTTTAAAGGCACCTA-CTTGTTATAAAATTATAATTTAGGATAAATGTGGTAAA-TTTTAGCAAAACCATATTTGGTTTAGTCTTCCCACT----GGTATTTATTGTTTACTTTGAATATTTTT-ATTAATAATTAACTCATAA----TTTTTATTCCAAAGCTCAA-TGACTATCATTTGAATATAACTTTGTCCAGTACAAAGATGC--TATAGCTGCCTGTGATT-TATGAG-TTAGGCAT-TAG-ATCCCCATTTTCAGAC
i colAng1.NW_012121088v1       C 0 I 3
s calJac3.chr1                 130388267 279 - 210400635 ATGT---CAATCT------CACATTATGTATTTTT-------------TCTGACCACTTA---ATATTTTAAAGACATCTA-CTTGTCATAAAATCACAGTTTGGAACAAATGTAGTAAA-TTTTAGCATAA-CATATTTGATTTGGTGTTCTGACTGGTAGGtatttataatttagtttgaatattttt-attaataattGGCTTATAA----TTTACATTTTAAGTCTCAA-TGACTATCATTTGGATATAATTTTGCGCAGTACAAAGATAC-TTGCTGCTGTCTGTGATT-TATGAG-TTTG---------------CTGTTCAGAC
i calJac3.chr1                 C 0 I 3
s saiBol1.JH378105              64658870 305 -  72162052 ATAT---CAGTCT------CAAATTATGTATTTTTATGACTATGTTTACATGGCCATAAAAATACATTTTAAAGGAAACTA-CTTGTCATAAAATCATAATTTAGGACAAATATGTTAAA-TTTTAGCAAAACCATATCTGATTTAGTCTTCCCACT----GGTATTTATAATTTACTTTGACTATTTGT-ATTAATAATTGCCTCATAA----TTTTTATTTTAAGGCTCAA-TGACTACCATTTGAATATAATTTTGTCCAGTACAGAAATAC-TTGTAGCTGCCTGTGATT-TATGAA-TTGGGCAT-TAG-ATCCTCATTTTCAGAC
i saiBol1.JH378105             C 0 I 3
s cebCap1.NW_016107851v1         1071383 305 +   1314817 ATAT---CAGTCT------CAAATTATGTATTTTTATGACTACGTTTACATGGCCATAAAAATACATTTTAAAGGGAACTA-CTTGTTATAAAATCATAATTTAGGATAAATATGTTAAA-TTTTAGCAAAACCATATTTGATTTAGTCTTCCCACT----GGTATTTATAATTTACTTTGAATATTTGT-ATTAATAATTGCCTCATAA----TTTTTATTTCAAGGCTCAA-TAACTATCATTTGAATATAATTTTGTCCAGTACAAAAATAC-TTGTAGCTGCCTGTGATT-TATGAA-TTGGGCAT-TAG-ATCCTCATTTTCAGAC
i cebCap1.NW_016107851v1       C 0 I 3
s aotNan1.NW_018488791v1         6429114 305 -   6597006 ATAT---CAGTCT------CAAATTATGAATTTTTATGACTACGTTTACATGGTCATAAAAATATATTTTAAAGGGAACTA-CTTGTTATAAAATCATAATTTAGGATAAATATGTTAAA-TTTTAGCAAAACCATATTTGATTTAGTCTTCCCACT----GGTATTTATAATTTACTTTGAATATTTGT-ATTAATAATTACCTCATAA----TTTTTATTTCAAGGCTCAA-TGGCTATCGTTTGAATACAATTTTGTCCAGTACAAAAATAC-TTGTAGCTGCCTGTGATT-TATGAA-TTGGGCAT-TAG-ATCCTCATTTTCAGAC
i aotNan1.NW_018488791v1       C 0 I 3
s otoGar3.GL873538              19673753 277 -  27850971 ---------ATCT------CAATTTATGTATTTTTATGACCTCTCA-----------------ATTCTTTAAAGTGATCTACCTTTCTATTAAATCATAATTTGGAAATTAAGTGGTATA-TTTTAGCAAAATCATATTTGGTTTAATCCTCTCACT----GGTACTTATGCTTTACCATGAATCTTTTT-ACAGATAATTTGCTGATAA----TTT------CAAGGCTCAA-TGACTACCATTTAGATACAACTTTGTCCAATACAAAGATAG-TTGTAGCTATCTGTGATT-TATTAG-TTTGTCAT-CAC-ATCTCCGTTTTCGGTC
i otoGar3.GL873538             I 229 I 3
s canFam3.chr2                  79133449 228 -  85426708 ---------CTCT------CAAATCATTTATTCTTATGACCTTTTG-----------------ACTCTTTGAAGGCATCTA-TTTTTCATCAAATCATAATTTGGGATAACTGTGGTGAG-TTTTAGCAAAA-----------------------CT--------CAAATAACTCA------------------AATAATTTGCTCAT-------------TTCAAAACTCAATTAACTATCATTTGGGCATAAATTTTTCCAATACAAAGAAAA-TTATACTT--TTGTGATT-TATTGA-TTTGTCCC-TGG-ATCTCCATTTCCAGCT
i canFam3.chr2                 C 0 I 2
s dasNov3.JH570393               1773713 285 -   2296528 ---CTTTCAGTCC------CAATTTATGTATTATTATGACTGCTCA-----------------ACTCATTAAAGGCACCAG-CTTTTCATTAAGTCATAATCTGAGACAAATGTGGTAAA-TTTTAGCAAAA-TGTATTTGATTCATTGTTTCCATT----GCTACTTGTAATTTACTTTGAACATTTTTAACAAATGATTTGCTTATAATTACTTCTTATTTCAAGGCTCAA-TTACCATCATTTGGACATAGCTTG--CCTATACAGAGATAA-GTGTAACTG-CTGTGGTT-TGTTAT-GTTAGCAC-TGGAATCTCCCTGTT-----
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=813341.000000
s hg38.chr14_GL000009v2_random     37192 86 +    201709 AGAGGGGTGGCAGGCTTCACgtacagtgggaatggagtaattaca------ggagggagttgtaggagctttgaagtcagagaggga-ggtag
s panTro5.chr9                  41713141 86 + 116767853 TGAGCGGTGGCAGGCTTCAagtacagtgggaatggagtaattaca------ggtgggagttgtaggagctttgaagtcagagaggga-ggtag
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96061953 86 - 114479721 TGAGCGGTGGCAGGCTTCAagtacagtgggaatggagtaattaca------ggtgggagttgtaggagctttgaagtcagagaggga-ggtag
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           95168 86 -    416926 TGAGGGGTGGCAGGCTTCACATACAGTGggaatggagtaattaca------ggagggagttgtaggagctttgaagtcagagaggga-ggtag
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40830845 84 + 122973662 -gagggatggcaggcttcatgtacagtgggaatggagtaattaca------ggagggagttgtaggaac-ttgaagtcagagaggga-ggtag
i nomLeu3.chr1a                I 4 C 0
s rheMac8.chr15                   523054 84 - 111343173 TAaggggtggcagagttcatggagaatgggatggaagtgagtacg------ggacacagatgtaggagc--tgaggtcagggaggga-gttag
i rheMac8.chr15                I 3 C 0
s macFas5.chr13                111107391 84 - 111193037 AGAGGGGTGGCAGGCTTCACATACAGTGggaatggagtaattaca-------gagggagttgtaggagc-ttgaagtcagagaggga-ggtag
i macFas5.chr13                I 3 C 0
s macNem1.NW_012012823v1          366123 84 +    434444 AGAGGGGTGGCaggctt-atgtacagtgggaatggagtgagcaca------ggagggagttgtaggagc-ttgaagtcagagaggga-ggtag
i macNem1.NW_012012823v1       I 3 C 0
s cerAty1.NW_012002921v1          413440 84 -    438202 AGAGGGGTGGCAGGCTTCATGTACAATGggaatggagtgag-gca------ccaggggattgtaggagc-ttga-gtcagagagggacggtag
i cerAty1.NW_012002921v1       I 5 I 20
s chlSab2.chr2                  66462944 84 +  90373283 AGAGGGGTGGCAGGCTTCATgtacagtgggaatggagtgagcaca-------gagggagttgtaggagc-ttgaagtcagagaggga-ggtag
i chlSab2.chr2                 I 3 C 0
s manLeu1.NW_012105442v1         1513574 84 -   1547936 AGAGGGGTGGCaggctt-atgtacagtgggaatggagtgagcaca------ggagggagttgtaggagc-ttgaagtcagagaggga-ggtag
i manLeu1.NW_012105442v1       I 3 C 0
s colAng1.NW_012121088v1           28844 84 +    168452 AGAGGGGTGGCAGGCTTCACATACAGTGggattggagtaattaca-------gagggagttgtaggagc-ttgaagtccaagaggga-ggtag
i colAng1.NW_012121088v1       I 3 C 0
s calJac3.chr1                 130388549 84 - 210400635 TGAGGGGTGGTAGAGTGCATGTAAAgtggcagtgaagtgagtaca------tgacagagttgtaggagc--tgaggtcagggaggga-ggtag
i calJac3.chr1                 I 3 C 0
s saiBol1.JH378105              64659178 85 -  72162052 TGAGGGGTGGCAGGCTTTACACACAATGggaatgaagtgagtaca------ggagggagttttaggagc-ttgaggtcagagaggaa-ggtag
i saiBol1.JH378105             I 3 C 0
s cebCap1.NW_016107851v1         1071691 85 +   1314817 CGAGGGGTGGCAGGCTTTACACACAATGggaatggagtgagtaca------ggagggagttttaggagc-ttgaggtcagagaggga-ggtag
i cebCap1.NW_016107851v1       I 3 C 0
s aotNan1.NW_018488791v1         6429422 85 -   6597006 CGAGGGGTGGCAGGCTTTACACGCAATGggaatggaatgagtaca------ggagggagttttaggagc-ttgaggtcagagaggga-ggtag
i aotNan1.NW_018488791v1       I 3 C 0
s otoGar3.GL873538              19674033 78 -  27850971 TGA------GCAGGATTCATgcatagtgggaatggagcaagtagg------ggagagagttgtagcagc--tgaggccccggaggga-ggtgg
i otoGar3.GL873538             I 3 C 0
s canFam3.chr2                  79133679 89 -  85426708 Tgaggggtggcaggattcttgtgtagcaggagtggaatgagcatgagcagggaagggagccctaggagc--tgaggtcaaggaggga--gtag
i canFam3.chr2                 I 2 C 0
s dasNov3.JH570393               1773998 78 -   2296528 ----GGATGTGTggagtccagcgtagcaggtgtgcagtggttt--------ggggagaatctcaatagc--tgaggtcagggaggga-ggtgg
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=132273.000000
s hg38.chr14_GL000009v2_random     37278 14 +    201709 agacctgtttacct
s panTro5.chr9                  41713227 14 + 116767853 aggcctgtttacct
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96062039 14 - 114479721 aggcctgtttacct
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           95254 14 -    416926 aggcctgtttacct
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40830929 14 + 122973662 aggcctgtttacct
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   523138 14 - 111343173 aggccatgttacct
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111107475 14 - 111193037 aggcctgtttacct
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          366207 14 +    434444 aggcctgtttacct
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66463028 14 +  90373283 aggcctgtttacgt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1513658 14 -   1547936 aggcctgtttacct
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           28928 14 +    168452 aggcctgtttacct
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130388633 14 - 210400635 aggccatgttacct
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64659263 14 -  72162052 aggcctgtttacct
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1071776 14 +   1314817 aggcctgtatactt
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6429507 14 -   6597006 aggcctgtttacct
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19674111 14 -  27850971 aagctaggtcacgt
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79133768 14 -  85426708 aagccaggttatgt
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1774076 14 -   2296528 aggtggggttaccg
i dasNov3.JH570393             C 0 I 3
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e cerAty1.NW_012002921v1          413524 20 -    438202 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1191620.000000
s hg38.chr14_GL000009v2_random     37292 113 +    201709 aggacctcaaaggccattg----gaat---tttacttttattctgagataggaatct------------gttggaaggatttgaacaggtgattgaATATGTGAGGAAC-----------------------------------------------------------------------------------TTTGAGGTTGAGTTGAGCTTCTA
s panTro5.chr9                  41713241 113 + 116767853 agggcctcaaatgctattg----gaat---tttacttttattctgagataggaatct------------gttggaaggatttgaacaggtgattgaATATGTCAGGAAC-----------------------------------------------------------------------------------TTTGAGGTTGAGTTGAGCTTCTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96062053 113 - 114479721 agggcctcaaatgctattg----gaat---tttacttttattctgagataggaatct------------gttggaaggatttgaacaggtgattgaATATGTCAGGAAC-----------------------------------------------------------------------------------TTTGAGGTTGAGTTGAGCTTCTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           95268 112 -    416926 agggcctcaaaggccattg----gaat---tttacttttattctgagataggaatct------------gttggaaggatttgaacaggtgattgaATATGTTAGGAAC-----------------------------------------------------------------------------------TTTGAGG-TGAGTTGAGCTTCTG
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40830943 113 + 122973662 agggcctcaaaggccattg----gaat---tttacttttattctgagacaggaatct------------gttggaaggatttgaacagttgattgaATATGTTAGGAAC-----------------------------------------------------------------------------------TTTGAGGTTGAGTTGAGCTTCTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   523152 111 - 111343173 agcgccttgaaggccgttg----gaaa---tttaattttattctgagataggaatct------------gttggaaggatttcaacaggcaactgaATATGTGAGGAAC-----------------------------------------------------------------------------------TC--AGGTTGAGTTGAGGGTCTA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111107489 113 - 111193037 agggcctcaaaggtcattg----gaat---tttacttttattctgagataggaatct------------gttagaaggatttgaacaggtgattaaATATGTTAGGAAC-----------------------------------------------------------------------------------TTTGAGGTTGAGTTGAGCTTCCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          366221 113 +    434444 agggcctcaaaggccattg----gaat---ttggcttttattctgagataggaatct------------gttggaaggatttgaacaggtgattaaATATGTTAGGAAC-----------------------------------------------------------------------------------TTTGAGGTTGAGTTGAGCTTCTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          413544 111 -    438202 agggcctcaaaggccattg----gaat---ttt-ctttatttctgagataggaatct------------gttggaaggatttgaacagGTTGATTGAT-TGCTAGGAAC-----------------------------------------------------------------------------------TTTGAGGTTGAGTTGAGCTTCTA
i cerAty1.NW_012002921v1       I 20 C 0
s chlSab2.chr2                  66463042 113 +  90373283 agggcctcaaaggtcattg----gaat---tttacttttattctgagataggaatct------------gttggaaggatttgaacaggtgattgaATATGTTAGGAAC-----------------------------------------------------------------------------------TTTGAGGTTGAGTTGAGCTTTTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1513672 113 -   1547936 agggcctcaaaggccattg----gaat---tttacttttattctgagataggaatct------------gttggaaggatttgaacaggtgattgaATATGCTAGGAAC-----------------------------------------------------------------------------------TTTGAGGTTGAGTTGAGCTTCTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           28942 113 +    168452 agggcctcaaaggtcattg----gaat---tttacttttattctgagataggaatct------------gttagaaggatttgaacaggtgattgaATATGTTAGGAAC-----------------------------------------------------------------------------------TTTGAGGTTGAGTTGAGCTTCTA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130388647 111 - 210400635 agggccttgaaggccattg----gaat---tttacttttattctgagataggaatct------------gttggaaggacttgaacCTGTGACTGAATAGGTGAGAAA-------------------------------------------------------------------------------------CTCAGGTTGAATTGAAGGTCTA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64659277 112 -  72162052 agagcctcaaaggccattg----gaat---tttacttttattctggggtagaaatct------------gttggaaggatttgaacaagtgaTGGAATATGTTAGGAA------------------------------------------------------------------------------------TCTCAGGTTGAGGTGAGCTTCTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1071790 112 +   1314817 aggacctcgaaggccattg----gaat---tttacttttattctgagatagaaatct------------gttagaaggatttgaacaggtgattgaATATGTTAGGAA------------------------------------------------------------------------------------TCTGAGGTTGAGTTGAGCTTCTA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6429521 110 -   6597006 agggcctcaaaggccattg----gaat---tttacttttattccgagatagaaatcg------------gttggaaggatttgaataggtgattgaAT--GTTAGGAA------------------------------------------------------------------------------------TCTGAGGTTAAATTGAGCTTCTA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19674125 116 -  27850971 ---------agggccatta----gaat---tttgcttttattctgagataggactcttaggactctgagataggactcatttgaGCATATGATTGACTATATGAAGAAG-----------------------------------------------------------------------------------TCTAATGTTGATTTGAGCTTCTA
i otoGar3.GL873538             C 0 I 120
s canFam3.chr2                  79133783 116 -  85426708 gggggcttgaaggccatta----gaatgacttcacttttgttctgagatagtaacct------------attggaaggttttgagcaaagggttgacTATGTGAAGAAC-----------------------------------------------------------------------------------TTGGAAGTTAATTTAAGCCTCTA
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1774093 181 -   2296528 agggcctggaaggctcttgtaaagact---tttgctcttattctgagataggaatct--------------tggaaggatt-------------gagtatgtgaggaACCTCTAATAAAAAAGAGGGAAAAAGTGTAGAACTTACCACCTCCACTCTCACCCACATACCCTTTTTTTTTTTTAAGCAATAGGTTTGTTGTTAAACTTTGCA----
i dasNov3.JH570393             I 3 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=15561.000000
s hg38.chr14_GL000009v2_random     37405 1 +    201709 A
s panTro5.chr9                  41713354 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96062166 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           95380 1 -    416926 A
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40831056 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   523263 1 - 111343173 A
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111107602 1 - 111193037 A
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          366334 1 +    434444 A
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          413655 1 -    438202 A
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66463155 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1513785 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           29055 1 +    168452 A
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130388758 1 - 210400635 A
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64659389 1 -  72162052 A
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1071902 1 +   1314817 A
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6429631 1 -   6597006 A
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19674361 1 -  27850971 A
i otoGar3.GL873538             I 120 C 0
s canFam3.chr2                  79133899 1 -  85426708 A
i canFam3.chr2                 C 0 I 114
s dasNov3.JH570393               1774274 1 -   2296528 A
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1847978.000000
s hg38.chr14_GL000009v2_random     37406 202 +    201709 GATGATTGAATGGTG-GGA-----------------------TG----AATCTGTTATG-TAAGTAA--GAGAATACCA--ATTTGGCAGGAAGAGAACATA-TTGTGCATCCCTCACTGAATTCAGTAATAAATAAAAATGTGTACATGTGAT---TAAAAGAAGGTGAATTGATATGTGTGGTGAT-------------AATTTTCAAAGTACGT---ATGTTAGAGTTAAATATTATTAACATAATT---TAATA
s panTro5.chr9                  41713355 205 + 116767853 GGTGATTGAATGGTG-GGA-----------------------TG----AATCTGTTGTG-TAAGTAA--GAGAATAACA--ATTTGGCAGGAAGAGAACATA-TTCTGCATCCCTCACTGAATTCAGTAATAAATAAAAATGTGTACATGTGAT---TAAAAGAAGGTGAATTGATATGTGTGGTGAT-------------CATTTTCAAAGTAGGT---ATGTTAGAGTTAAATATTATTAACATAATTTAATAATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96062167 205 - 114479721 GGTGATTGAATGGTG-GGA-----------------------TG----AATCTGTTGTG-TAAGTAA--GAGAATAACA--ATTTGGCAGGAAGAGAACATA-TTCTGCATCCCTCACTGAATTCAGTAATAAATAAAAATGTGTACATGTGAT---TAAAAGAAGGTGAATTGATATGTGTGGTGAT-------------AATTTTCAAAGTAGGT---ATGTTAGAGTTAAATATTATTAACATAATTTAATAATA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           95381 199 -    416926 GATGATTGAAT-GTG-GGA-----------------------TG----AATCTGGTGTG-TAA-TAA--GAGAATACCA--ATTTGGCAGGAAGA-AACATA-TTCTGCATCCCTCACTGAATTCAGTAAT-AATAAAAATGTGTACATGTGAT---TGAAAGAAGGTGAATTGATATGTGTGGTGAT-------------AATTTTCAAAGTAGGT---ATGTTAGA-TTAAA-ATTATTAACATAATTTAATAATA
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40831057 203 + 122973662 GATGATTGAATGGTG-GGA-----------------------TG----AATCTGTTGTGTTAAGTAA--GAGAATACCA--ATTTGGCAGGAGGATAACACA-TTCTGCATCCCTCACTGAATTCAGTAATAAATAAAAGTGTGTACATGTGAT---GAAAAGACGGTGAATTGATATGT---GTGAT-------------TATTTTCAAAGTAGGC---ATGTTAGAGTTAAATATTGTTAACATAATTTAATAATG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   523264 200 - 111343173 GGTGAATGAATAGCG-GGC-----------------------TA----AATCCATCTGT-CATGTAA--GAGAAT---G--ATTTGGCAGGAAGATAACACC-TTCTGTGCCCCTCACTGAATTCAGTAATAAAGAAGAATGTGTACGTATGAG---GAAAAGAAAGTGAATCTGTATGTGTGGTAAT-------------AATTTTCAAAGTATGT---ATACTA-AGTTAAATATTATTAACA-TATTTAATAATA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111107603 203 - 111193037 GATGATTGAATGGTG-GGA-----------------------TG----AGTCTGTTGCG-TAAGTA----AGAATACGA--ATTAGGCAGGAAGATAACACA-TTCTGCATTCCTCACTGAATTCAGTAATAAATAAAAGTGTGTACATGTGAT---GAAAAGAAGGTGAATTAATGTGTGTGGTGAT-------------AATTTTCAAAGTAGGT---ACGTTAGAGTTCAATAGTATTAACATAATTTAATAATA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          366335 201 +    434444 GATGATCAAATGGTG-GGA-----------------------TG----AATCTGTTTTGTTAAGTAA--GAGAATACCA--ATTTGGCAGGAAGGTAACACA-TTCTGCCTCCCTCGCTGAATTCAGTAATAAATAAAAGTGTGTACATGTGAT---GAAAAGAAAGTGAATTGATGTGTGTGGTGAT-------------AATTTTCAAAGTAGGT---ATATTAGAGTTAAATGTTACTAACA-----TAATAAGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          413656 192 -    438202 GATGATCAAATGCGT-GGA-----------------------TG----AATCTGTTGT--TAAGTAA--GAGAATACCAATATTCGGCAGGAAGGTAACACATTTCTGCCTCCCTCGCTGAATTCAGTAATAAA----AGTGTGTACATGTA-----TGAAAGAAAGTGAAT-GATGTGTGTGGTGAT-------------AATTTTCAAAGTAGGT---ATATTAGAGTTAAATGTTACTAACA--------TAAGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66463156 195 +  90373283 GATGATCGAATGGTG-GGA-----------------------TG----AATCTGTTGTG-TAAGTA----AGAATACCA--ACTTGGCAGGAAGGTAACACA-TTCTACCTCCCTCGCTGAATTCAGTAATAAATAAAAGTGTGTACATGTGAT---GAAAAGAAGGTGAATTAATGTGTGTGGTGAT-------------AATTTTCAAAGTAGGT---ATATTAGAGTTAAATGTTATTAACA-----TAAT---A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1513786 197 -   1547936 GATGATCAAATGGTG-GGA-----------------------TG----AATCTGTTGT--TAAGTA----AGAATACTA--ATTTGGCAGGAAGGTAACACA-TTCTGCCTCCCTCGCTGAATTCAGTAATAAACAAAAGTGTGTACATGTGAT---GAAAAGAAGGTGAATTAATGTGTGTGGTGAT-------------AATTTTCAAAGTAGGT---ATATTAGAGTTAAATGTTACTAACA-----TAATAAGA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           29056 205 +    168452 GATGATTGAATGGTG-GGA-----------------------TG----AGTCTGTTGTG-TAAGTAA--GAGAATACCA--ATTAGGCAGGAAGATAACACA-TTCTGCATTCCTCACTGAATTCAGTAATAAATAAACATGTGTATATGTGAT---GAAAAGAAGGTGAATTAATGTGTGTGGTGAT-------------AATTTTCAAAGTAGGT---ACGTTAGAGTTAAATAGTATTAACGTAATTTAATAATA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130388759 206 - 210400635 GATGAATGAATAGTG-GGC-----------------------TGAATCAATCTGTCATG-TAAATAA--GAGAATACCA--ATTTGGTGGGAACATAACACT-TTCTGTGTTCCTCATGGAGTTCAGTAATAAACAAGAATGTGTACATAAGAG---GAAAAGAAAGTGAATCTGTCTGTGTGATAAT-------------AATTTTCAAAGTATGT---AAGTTAGAGTTAAATATTATGAACATAATTTAATA---
i calJac3.chr1                 C 0 I 3
s saiBol1.JH378105              64659390 193 -  72162052 GATGATTGAATAGTG-GGA-----------------------TG----AATCTGTTGTG-TAAGTAA--GAGAATACCA--GTTTGGCAGGAAGACAACACA-TTCTGCGTCCCTTACTGAATTCAGCAACAAATAAAAATGTGCATATATGAT---GAAAAG---GTGAATCGATGTGTGTGGTGAT-------------AATTTTCAAAGTATGT---A------TGTTAAGTATTATTGACataatttaata---
i saiBol1.JH378105             C 0 I 3
s cebCap1.NW_016107851v1         1071903 192 +   1314817 GATGATTGAATAGTG-GGA-----------------------TG----AATCTGTTGTG-TAAGTAA--GAGAATACCA--ATTTGGCAGGAAGAGAACACA-TTCTGCGTCCCTCACTGAATTCAGTAA-AAATAAAAATGCGTACATATGAT---GAAAAG---GTGAATCGATGTGTGTGGTGAT-------------AATTTTCAAAGTATCT---A------TGTTAaatattattaacataatttaata---
i cebCap1.NW_016107851v1       C 0 I 3
s aotNan1.NW_018488791v1         6429632 193 -   6597006 GATGATTGAATAGTG-GGA-----------------------TG----AATCTGTTGTG-TAAGTAA--GAGAATGCCA--ATTTGGCAGGAAGACAACACA-TTCTG---CTCTCACTGAATTCAGTAATAAATAAAAATGTGTATATGTGAT---GAAAAGAAGGTGAATTGATGTGTGTGGTGAT-------------AATTTTCAAAGTATGT---A------TGTTAAATATTATTAACATAATTTAATA---
i aotNan1.NW_018488791v1       C 0 I 7
s otoGar3.GL873538              19674362 207 -  27850971 GACAAATGAATAGTG-GGC-----------------------TG----AATCTGTTGTC-TAAATAATGGAATATATCA--ATTTGATAGGAAGATAATACC-TTCTGTGTCCTTCACTGAAATGAGTTATAAACAGGAGTATGTGCACATGAG---GAAAGGAAGGTAAATCGATGTATATAGTGCT-------------GTTTTTGAATGTTTTTTGAATGTTAGATTTAAATATTATTGACATTTGGTAATA---
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79134014 191 -  85426708 AAAGAATGGGTAGTGAGGT-----------------------TG----AAATAATTATC-TAAGTAA--CATAACACTG--ACTAAGCAGGAGGGTAACACT-TTTTGTGTCTTTAGCCAAATTCA---ATAAACAGCAGTGTGTACATTTTAG---GAAAAGAAGGTGAGTTGATGTATGTGGTGAT--------------------AAAGTACAT---ATGTTAGAATTACATATTATTAACATAA--TAATA---
i canFam3.chr2                 I 114 C 0
s dasNov3.JH570393               1774275 244 -   2296528 GCTCATTGTGTTGCG-GGGAGAAAGAAGGTGGATAATGGAGCTG----AACCTATTGTC-TAATAAA--TGTAATACTG--ATTAGGCAGGGGGATAACACT-TTCCCTGTCTTTAAATGAATTCAGCGATAAACAGAAATGTATACATAAGAGGAAGAAAAGAAGGTGAATTGATGTATGTGGTGATATTTTTCAAATATATTTTTCAAAGTATGT---ATCTTAGAATTAGGTTTTATGAACACAATTTATTAATA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=46067.000000
s hg38.chr14_GL000009v2_random     37608 7 +    201709 AGGCAAT
s panTro5.chr9                  41713560 7 + 116767853 AGGCAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96062372 7 - 114479721 AGGCAAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           95580 7 -    416926 AGGCAAT
i gorGor5.CYUI01015896v1       C 0 C 0
s nomLeu3.chr1a                 40831260 7 + 122973662 AGGCAAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   523464 7 - 111343173 AGACACT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111107806 7 - 111193037 AGGCAAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          366536 7 +    434444 AGGCAAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          413848 7 -    438202 AGGCAAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66463351 7 +  90373283 AGGCAAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1513983 7 -   1547936 AGGCAAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           29261 7 +    168452 AGGCAAT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130388968 2 - 210400635 -----AG
i calJac3.chr1                 I 3 I 5
s saiBol1.JH378105              64659586 2 -  72162052 -----at
i saiBol1.JH378105             I 3 I 2
s cebCap1.NW_016107851v1         1072098 2 +   1314817 -----at
i cebCap1.NW_016107851v1       I 3 I 2
s otoGar3.GL873538              19674569 7 -  27850971 AGGTGAT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79134205 7 -  85426708 AGATCAT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1774519 7 -   2296528 AACTGAT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6429825 7 -   6597006 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2128514.000000
s hg38.chr14_GL000009v2_random     37615 181 +    201709 TTATAAAATCAGTAACAAAAA--TATTTTCTCAGGTGGTTGTGAGACAACTTCAACAAGAAGCGGCTGACAGCC-TAAAAAAATTAACTATGTTAGAGTCTCCACTGGAAGGTATATCACATTATCACATTAATTT---GGATGAGACACAGGTCCCAAAGAAGAAATTATTTCAAGTGGAAAGTCA
s panTro5.chr9                  41713567 181 + 116767853 TTATAAAATCAGTAACAAAAA--TATTTTCTCAGGTAGTTGTGAGACAACTTCAACAAGAAGCAGCTGACAGCC-TAAAAAAATTAACTATGTTATAGTCTCCACTGGAAGGTATATCACATTATCACATTAATTT---GGATGAGACACAGGCCCCAAAGAAGAAATTATTTCAAGTGAAAAGTCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96062379 180 - 114479721 TTATAAAATTAGTAACAAAAA--TATTTTCTCAGGTGGTTGTGAGACAACTTCAACAAGAAGCGGCTGACAGCT-TAAAAAAATTAACTATGTTAGAGTCTCCACTGGAAGGTATATCACATTATCACATTAATTT---GGATGAGACGCAGGCCCCAAAGAAGAAATTATTTCAAGTGGAAAGTC-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015896v1           95587 181 -    416926 TTATAAAATCAGTAACAAAAA--TATTTTATCAGGTGGTTGTGAGACAACTTCAACAAGAAGTGGCTGACAGCTGTAAAAAAATTAA-GACGTTAGAGTCTCCACTGGAAGGTATATCACGTTGTCACATTAATTT---GGATGAGACACAGGCCTCAAAGAAGAAATTATTTCAAGTGGAAAGTCA
i gorGor5.CYUI01015896v1       C 0 N 0
s nomLeu3.chr1a                 40831267 177 + 122973662 TAATAAAATCAGTAATAAAAA--TATTTTATCAGGTGGTTGTGAGACAACTTCAACAAGAAATGGCTGATTCCC-TTAAAAAAT----TATGTTAGAGTCTCCACTGGAAGGTACATCATGTTGTCACATTAATTT---GGATGAGAAACAGGCCTCAAAGAAGAAATTATTTCAAGTGGAAAGTCA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   523471 181 - 111343173 TTATAAAATTAGTAACAAAAA--TATTTTATTAGGTGATTGTGAGACAACTTCAAGAAGAACTGGCCAATCACC-TTAAAAAATTTCCTATGTCAGATTCTCCACTGGAAGGTACATCACATTGTCACATTAATTT---GGATGAGACACGGGCTTCAAAGAAGAAATTATTTCAAGTAGGAAGTCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111107813 181 - 111193037 TAATAAAATCAGTAACAAAAT--TATTTTATCGGGTGGTTGTGAGACAACTTCAACGAGAAGTAGCTGATTCCC-TTAAAAAATTAACTATGTTAGAGTCTCCACTGGAAGGTACATCACGTTGTCACATTAATTT---GGATGAGACACAGGCCTCAAAGAAGAAATTATTTCAAGTGAAAAGTCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          366543 178 +    434444 TTATAAAATCAGTAACAAAAA--TATTTTATCAGGTGGTTGTGAGGCAACTTCA---AGAAGTGGCTGATCCCC-GTAAAAAATTAACTACGTTAGAGTCTCCACTGGAAGGTACATCACATTGTCACATTAATTG---GGATAAGACACAGGCCTCAAAGAAGAAATTATTTCAAGTGGAAAGTCA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          413855 178 -    438202 TTATAAAATCAGTAACAAAAA--TATTTTATCAGGTGGTTGTGAGGCAACTTCA---AGAAGTGGCTGATCCCC-GTAAAAAATTAACTACGTTAGAGTCTCCACTGGAAGGTACATCACATTGTCACATTAATTT---GGATAAGACACAGGCCTCAAAGAAGAAATTATTTCAAGTGAAAAGTCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66463358 181 +  90373283 TTATAAAATCAGTAACAAAAA--TATTTTATCAGGTGGTTGTGAGACAACTTCAACGAGAAGTAGCTGATTCCC-TTAAAAAATTAACTATGTTAGAGTCTCCACTGGAAGGTACATCACATTGTCACATTGATGT---GGATAAGACACAGGCCTCAAAGAAGAAATTATTTCAAGTGGAAAGTCA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1513990 178 -   1547936 TTATAAAATCAGTAACAAAAA--TATTTTATCAGGTGGTTGTGAGGCAACTTCA---AGAAGTGGCTGATCCCC-GTAAAAAATTAACTACATTAGAGTCTCCACTGGAAGGTACATCACATTGTCACATTAATTT---GGATAAGACACAGGCCTCAAAGAAGAAATTATTTCAAGTGGAAAGTCA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           29268 181 +    168452 TAATAAAAGCAGTAACAAAAA--TATTTTATCAGGTGGTTGCGAGACAACTTCAACAAGAAGTAGCTGATTCCC-TTAAAAACTTAACTATGTTAGAGTCTCCACTGGAAGGTACATCACGTTGTCACATTAATTT---GGATGAGACACAGGCCTCAAAGAAGAAATTATTTCAAGTGGAAAGTCA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130388975 179 - 210400635 TTGTAAAATTAGTAACAAA----TATTTTATCAGGTGATTGTGAGAAAACTTCAAGAAGAACTGGCTGGTAGCC-TTAAAAAAATATCTATGCCGGAGTCTCCACTGGAGGGTACATCACGTTGTCACATTAATTT---GGAGGAGACAGAGGCTTCAAAGAAAAAATTATTTCAAGTAGGAAATCA
i calJac3.chr1                 I 5 C 0
s saiBol1.JH378105              64659590 178 -  72162052 ttataaaatCAGTAACAAAAC--TATTTTTTCAGGTGGTTGTGACACAACTTC---AACAATTGGCTGATACCC-TAAAAAAAAAAAGTATGTCAGAGTCACCACTAGAAGATACATCACGTTGTCACATTAATTT---GGATGAGACACAGGCCTCAAAGAAGAAATTATTTCAAGTCGAAAGTCA
i saiBol1.JH378105             I 2 C 0
s cebCap1.NW_016107851v1         1072102 180 +   1314817 -tataaaatCAGTAACAAAAG--TATTTTTTCAGGTGGACGTGAGACAACTTCAACAACAATTGGCTGATAGCC-TAAAAAATATAAGTACGTCAGAGTTGCCACTAGAAGGTACATCACGTTGTCACATTAACTT---GGATGAGACACAGGCCTCAAAGAAGAAATTATTTCAAGTAGAAAGTCA
i cebCap1.NW_016107851v1       I 2 C 0
s aotNan1.NW_018488791v1         6429832 181 -   6597006 TTATAAAATCAGTAACAAAAG--TATTTTTTCAGGTGGTTGTGAGACAACTTCAACAACAATTGGCTGATACCC-TAAAAAGAATAAGTATGTTAGAGTCGTCACTAGAAGGTACATCACGTTGTCACATTAATTT---GGATGAGACACAGGCCTCAAAGAAGAAGTTATTTCAAGTAGAAAGTCA
i aotNan1.NW_018488791v1       I 7 C 0
s otoGar3.GL873538              19674576 186 -  27850971 TTATAAAATCTGTAACAAAAAATTATCTTATCAGGTAGTTGTGAGACAACTTCAACAAGAACTGGCTGATACCC-TAAAAAAGCAGTCTATGTCAGAGGCTTCCCTGGAGGTTACATCACGTTACCGCATTAGTTTAGAAGATGAGACACAGGATTTAAAGAAGAAATTAGGTCAAATCAGAAGTCA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79134212 184 -  85426708 TTATAAAATCAGTAACAGAAG--TGTCTTATTAGGTAGTTATGAGACAATTTCAACAAGAACTGGCTGATGCCC-TGAAAAAACAATCTATGTCAGAGGCTTCATTGGAGGTTACATCGCATTATCGTATTAATTTAGAAGATGAGGTACAGGATTTAAAGAAGAAATTAGATCAAATCAAAAGTCA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1774526 184 -   2296528 TTCTAAAATCAGTAACAGAAA--TGTTTTATCAGGTAGTTGTAAGACAACTTCAACAAGAACTGGCTGATACCC-TAAAAAAACAATCTATGTCAGAGGCTTCGCTGGAGGTTACATCCCGTTATCGCATTAATTTAGAAGATGAAACACAGGATTTAAAGAAGAAATTAGGTCAAATCAGATGTCA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=892337.000000
s hg38.chr14_GL000009v2_random     37796 77 +    201709 AGTATGTATGGAA-CTTAGCATGTCAACTGTTATTCTGTAGCTAGTTGAATTACATAACATG-TTTTAGGATACTAATT
s panTro5.chr9                  41713748 77 + 116767853 AGTATGTATGGAA-TTTAACATGTCAACTCTTATTCTGTATCTAGTTGAATTATATAACGTG-TTTTAGGATACTAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96062559 76 - 114479721 AGTATGTAAGGAG-CTTAACATGTCAACTG-TATTCTGTAGCTAGTTGAATTATATAACATG-TTTTAGGATACTAATT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1               0 77 +     53730 AGTATGTATGGAA-TTTAACATGTCAACAGTTATTCTGTAGCTAGTTGAATTATATAACATG-TTTTAGGATACTAATT
i gorGor5.CYUI01002030v1       N 0 C 0
s nomLeu3.chr1a                 40831444 77 + 122973662 AGTATGTATGGAA-TTTAACATGTTGACAGTTATTCTGTAGCTGGTTGAATTATATAACATG-TTTTAGGATACTAATT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   523652 77 - 111343173 AGTATGTGTGGAA-TTTAACATGTAGACAGTTAATCTGTAGCTGGTTGGATAATATAAAGTC-TTTTAGGATACTAATT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111107994 77 - 111193037 AGTATGTATGAAA-TTTAACATGTCGACAGTTATTCTGCAGCTGATTGAATTATATAACATG-TTTTAGGATACTAATT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          366721 77 +    434444 AATATGTATGGAA-TTTAACATGTCGACAGTTATTCTGTAGCTGGTTGAATTATATAACATG-TTTTAGGATACTGATT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          414033 77 -    438202 AATATGTATGAAA-TTTAACATGTCGACAGTTATTCTGTAGCTGGTTGAATTATATAACATG-TTTTAGGATACTGATT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66463539 77 +  90373283 AATATGTATGGAA-GTTAACATGTCGACAGTTATTCTGTAGCTGGTTGAATTATAGAACATG-TTTTAGGATACTAATT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1514168 78 -   1547936 AATATGTATGGAATTTTAACATGTCGACAGTTATTCTGCAGCTGATTGAATTACATAACATG-TTTTAGGATACTCATT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           29449 77 +    168452 AGTATGTATGAAA-TTTAACATGTCAAGAGTTATTCTGTACCTGGTTGAATTATATAACATG-TTTTAGGATACTAATT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130389154 77 - 210400635 GGTATGTATGGAA-TTTAACATGTCAACAGTTAACGTGTAGCTGGTTGAATAATATAAAGTG-TTTTAGGTTACTGACT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64659768 77 -  72162052 AGTATGTATGGAA-TTTAACATGTTGGCAGTTACTCCGCAGCTGGTTGAATTCTATAACATG-TTTTAGGATACTAATT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1072282 77 +   1314817 AGTATGTATGGAA-TTTAACATGTCGGCAGTTATTCTGTAGCTGGTTGAATTCTATAACATG-TTTTAGGATACTAATT
i cebCap1.NW_016107851v1       C 0 I 206
s aotNan1.NW_018488791v1         6430013 77 -   6597006 AGTATGTATCGAA-TTTAACATGTCGGCAGTTATTCTATAGCTGGTTGAATTCTATAACATG-TTTTAGGATACTAATT
i aotNan1.NW_018488791v1       C 0 I 234
s otoGar3.GL873538              19674762 78 -  27850971 AGTATGTATGAAA-TTTAACATGTCCACAATTGATCTATAGCTGATGCAATAATATAAAGTGCTTTTAGCATATTAATC
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79134396 76 -  85426708 GGTATGTATTAAA-TATAACATGTCAACAGTTTGTCTGTAGCT-GTTAAATAATATAAAGTG-TTGTAGAATGCTAATT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1774710 76 -   2296528 AGTATGTATGAAA-TTTAACGT-TCAGTAGTTAATCTATAGCTCTTTAAATAATGTATTTTA-TTTTAGGATACTAATT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=88352.000000
s hg38.chr14_GL000009v2_random     37873 19 +    201709 ATGGCAGA-A-GCTTGATTTT-
s panTro5.chr9                  41713825 19 + 116767853 TTGGCAGA-A-GCTTGATTTT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96062635 19 - 114479721 TTGGCAGA-A-GCTTGATTTT-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1              77 19 +     53730 TTGGCAGA-A-GCTTGATTTT-
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40831521 19 + 122973662 TTGGCAGA-A-GCTTGATTTT-
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   523729 20 - 111343173 TCAGTGGACC-ACCTGGTTGT-
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111108071 15 - 111193037 TTGGCAGA-A-GC----TTTT-
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          366798 19 +    434444 TTGGCAGA-A-GCTTGGTTtt-
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          414110 19 -    438202 TTGGCAGA-A-GCttgatttt-
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66463616 19 +  90373283 TTGGCAGA-A-GCTTGATTTT-
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1514246 19 -   1547936 TTGGCAGA-A-GCTTGATTTT-
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           29526 15 +    168452 TTGGCAGA-A-GC----TTTT-
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130389231 20 - 210400635 TCAGTGGG-CAGCTTGATTTT-
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64659845 19 -  72162052 TTGATGGA-T-GCttaatctt-
i saiBol1.JH378105             C 0 I 193
s otoGar3.GL873538              19674840 20 -  27850971 ATAATACACC-ACTTTATttt-
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79134472 20 -  85426708 TCCATGGACC-ACTTTGTTTT-
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1774786 20 -   2296528 TTAGTGGA-C-ATTTTTCTTTT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=251233.000000
s hg38.chr14_GL000009v2_random     37892 43 +    201709 TTATTTTCATTACAATGAATT--ATTTCCACTTTACTATCTCTAT
s panTro5.chr9                  41713844 43 + 116767853 TTAGTTTCATTACAAAGAATT--ATTTCCATTTTACTATCTTTAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96062654 43 - 114479721 TTATTTTCATTACAATGAATT--ATTTCCATTTTACTATCTTTAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1              96 42 +     53730 TTA-TTTCATTATAATGAATG--ATTTCCATTTTACTATCTTTAT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40831540 39 + 122973662 GTATTTTCATTAT----AATT--ATTTCCATTTTACTATCTTTAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   523749 39 - 111343173 ATATTTTCATT----ATAATT--ATCACCATTTTATTATCTTTAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111108086 43 - 111193037 GTGTTTTAATTATAATTAATT--ATTTCCATTTTACTATGTTTAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          366817 39 +    434444 gtattttcatt----ttaatt--atttccattttactatctttat
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          414129 38 -    438202 gtattttcatt----ttaatt---tttccattttactatctttat
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66463635 43 +  90373283 GTATTTTCATTTTAATTAATT--ATTTCCATTTTACTATCTTTAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1514265 39 -   1547936 GTATTTTCATT----TTAATT--ATTTCCATTTTACTATCTTTAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           29541 43 +    168452 GTATTGTAATTATAATTAATT--ATTTCCATTTTACTATCTTTAT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130389251 43 - 210400635 GTATTTTAATTATAATTAATG--ACTACCGTTTAATTATCTTTAT
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19674860 39 -  27850971 ttattttcatt----actttt--attacaattttattatctttat
i otoGar3.GL873538             C 0 I 351
s canFam3.chr2                  79134492 40 -  85426708 GTATTTTCATT----TTAATT-TAGCATAATTTTAGTGTCTTCAC
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1774806 45 -   2296528 GTATTTTCattataattaattttattaaaattttattatcttttt
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=874997.000000
s hg38.chr14_GL000009v2_random     37935 142 +    201709 AATGTACTTATTTTTT---TATATTGTGACTTT-CATTCTACCATT-TTGAAAAACCATTGCATACCTTTTCTCTTACAATACGTACCCTTGGAAAAGTTGAGAATTATAT-ATCATTCCTCATAGAAA---ACTGAC-TTTTGTCCTGTTA-
s panTro5.chr9                  41713887 145 + 116767853 AATGTACTTATTTTTTTTATATATTGTGACTTT-CATTCTACCATT-TTGAAAAACCATAGCATACCTTTTCTGTTACAACATGTACCCTTGGAAAAGTTGAGAATTATAC-ATCATTCCTCATAGAAA---ACTGAC-TTTTTTCCTGTTA-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96062697 139 - 114479721 AATGTAC---TTTTTT---TATATTGTGACTTT-CATTCTACCATT-TTGAAAAACCATTACATACGTTTTCTCTTACAATATGTAACCTTGGAAAAGTTGAGAATTATAC-ATCATTCCTCATAGAAA---ACTGAC-TTTTTTCCTGTTA-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1             138 140 +     53730 AATGTACTTATTTTT----TATATTGTGACTTT-CATTCTACCATT-TTGAAAAACCATTGCATACCTTTTCTCTTACAATATGTACCCTTGGAAAAGTTGAGAATTATAC-ATCATTCCTCATAGAAA---ATGGAC-TTTTTTCCTGTT--
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40831579 141 + 122973662 AATGTACTTTTTTTTT---TATATTGTGACTTT-TGTTCTACCATT-TTGAAAAACAATTGCATGCCTTTTCTCTTACAATATGTACCCTTGGAAAAGTTGATAATTATAC-ATCATTCCGCAGAGAAA---ATTGAC-TTTTTTCCTGTT--
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   523788 141 - 111343173 AACGTACTTATTTCTT---CA-ACTCTGGCTCT-TGTTCTACCATT-TTGAAAAATAGTTGCATATGTTTTCTCTTACAATATTTACTCTTGGGAAAGTTGAGAATGATAC-AATATTCCTCACAGAAA---ATTGACTTTTTTTCCTGTT--
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111108129 140 - 111193037 AATGTACTT-TTCTTT---TATATTGTGACTTT-CATTCTACCATT-TTGAAAAACCATTGTATACCTTTTCTCTTGCAACACATGCCCTTGGAAAGGTTGAGAATTATAC-ATCATTCCTCACAGAAA---ATTGAC-TTTTCTCCTGTT--
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          366856 141 +    434444 aatgtacttatttttt---tatattGTGGCTTT-CATTCTACCATT-TTGAAAAACCATTGCATAGCTTTTCTCTTACAGTATGTACCCTTGGAAAAATTAAGAATTCCAC-ATCCTTCCTCACAGAAA---ATTGAC-TTTTTTCCTGTT--
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          414167 140 -    438202 aatgtactt-tttTTT---AATATTGTGGCTTT-CATTCTACCATT-TTGAAAAACCATTGCATAGCTTTTCTCTTACAGTATGTACCCTTGGAAAAATTAAGAATTCTAC-ATCCTTCCTCACAGAAA---ATTGAC-CTTTTTCCTGTT--
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66463678 141 +  90373283 AATGTACTTGTTTTTT---TATATTGTGACTTT-AATTCTACCATT-TTGAAAAACCATTATATACCTTTTCTCTTGCAACACATGCCCTTGGAAAGGTTGAGAATTATAC-ATCATTCCTCACAGAAA---ATTGAC-TTTTTTCCTGTT--
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1514304 140 -   1547936 AATGTACTT-TTTTTT---AATATTGTGGCTTT-CATTCTACCATT-TTGAAAAACCATTGCATAGCTTTTCTCTTACAGTATGTACCCTTGGAAAAATTAAGAATTCTAC-ATCCTTCCTCACAGAAA---ATTGAC-CTTTTTCCTGTT--
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           29584 139 +    168452 AATGTATT--TTTTTT---TATATTGTGATTTT-CATTCTACCATT-TTGAAAAACCATTGTATACCTCTTCTCTTGCAACATGTACCCTTGGCAATGTTGAGAATTATAC-ATCATTCCTCACAGAAA---ACTGAC-TTTTCTCCTGTT--
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130389294 137 - 210400635 AATATACTTATTTCTT---AA-ACTCTGCCTTT-TATTCTGCCATT-TTGAAAAA---TTGCATACCTCTTCTCTCACAATATTTACTCATGGGAAAGTTGAGAATTATAT-ATCATT-CTCACAGAAA---ATTGACTTTTTTTCCTGTT--
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19675250 129 -  27850971 AATGCACTTATTTCTT---AA-ACTTTCACTTT-CATCCTGCCATTATTCTCTTATAGTTACATAC--TTTTTTTTATAATA---ACTGTTAGGAAAGTTGAGAATTATAT-ATTTTTTCTCAGA----------GAC-TTTTTTCCTGTT--
i otoGar3.GL873538             I 351 C 0
s canFam3.chr2                  79134532 134 -  85426708 CATGCACTTATTTATT---AA-ATTCTGACTTTCCATTCTGCTATC-T---------GTGTTATATGTTTTTGCTTATAGCATTTAC---TAGGAAAGTTGAGACTTATGCAATTATTATTCACACAAATTGAGGGACTTTTTTTCCTGCT--
i canFam3.chr2                 C 0 I 220
s dasNov3.JH570393               1774851 127 -   2296528 aaaGCGCTTATTTCTG---CA-ATTTTGACTTT-CATTCTGCTATT--------GGTATTATACAG---------TATAATATTTATTCTTGGGAAAGGTAAGAATTATGC-AGT-TTTCTCACGGAAGTTGAAAGAC-TTTTTTCCTACT-A
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1818359.000000
s hg38.chr14_GL000009v2_random     38077 243 +    201709 AAAGAGTA-TTTTTAAGTAATTTTTGTATTGCTCTGATGAGGCAGGCCAGATTAAATCAGAGAA-----------GAATGTTTCATGGAATGTTCCAGAAAA------TTGTCTTATT-----TCTTCA--CTTTTGTG-AGTGGACACAGAATCTGTGTCTATTTATTTCACAGATTCTAGGTTAACTTG-TACAGAAAGGC----CATTATACTATTCTTTTAAAAGTGCATGTTTTAGGTTAATTTACAAACTATTTGAAAAGTTAGGCAT
s panTro5.chr9                  41714032 242 + 116767853 AAACAGTA-TTTTTAGGTAA-ATTTGTATTGCTCTGATGAGGCAGGCCAGATTAAATCAGAGGA-----------GAATGTTTCATGGAAAGTTCCAGAAAA------TTGTCTTGTT-----TCTTCA--CTTTTGTG-AATGGACACAGAATCTGTGTCTATTTATTTCACAGATTGTAGGTTAACTTG-TACAGAAAGGC----CATTATACCATTCTTTGAAATGTGCATGTTTTAGGTTAATTTACAAACTATTTGAAAATTTAGGCAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96062836 243 - 114479721 AAACAGTA-TTTTTAAGTAATTTTTGTATTGCTCGGATGAGGCAGGCCAGATTAAATCAGAGGA-----------GAATGTTTCATGGAATGTTCCAGAAAA------TTGTCTTATT-----TCTTCA--CTTTTGTG-AATGGACACAGAATCTGTGTCTATTTATTTCACAGATTCTAGGTTAACTTG-TACAGAAAGGC----CATTATACTATTCTTTGAAATGTGCATGTTTTAGGTTAATTTACAAACTATTTGAAAAGTTAGGCAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1             278 244 +     53730 AAACAGTA-TTTTTAAGTAATTTTTGTATTGCTCTGATGAGGCAGGCCAGATTAAATCAGAGGA-----------GAATGTTTCATGGAATGTTCCAGAAAA------TTGTCTTATT-----TCTTCA--CTTTTGCGAAATGGACACAGAATCTGTGTCTATTTGTTTCACAGATTCTAGCTTAACTTG-TACAGAAAGGC----CATTATACTATTCTTTGAAATGTGCGTGCTTTAGGTTAATTTACAAACTATTTGAAAAGTTAGGCAT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40831720 242 + 122973662 AAACA-TA-TTTTCAAGTAATTTTTGTATTGCTATGATGAGGCAGGCCAGATTAAATCAGAGGA-----------GAATATTTAATGGAATGTTCCAGAAAA------TTGTTTTATT-----TCTTCA--CTTTTGTG-AATGGACACAGAATCTGTGTCTATTTATTTCACAGATTCTAGGTTAACTTG-TACAGAAAGGC----TATTATACTATTCTTTGAAATGTACATGTTTTATGTTAATTTACAAACTATTTGAAAAGTTAGGTAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   523929 243 - 111343173 AAACAGTA-TTTTTAGATAATTTCCTTATTGCCTTGGTGAGGCAAGCCAGATTAAGTCAGAGGA-----------GAATGTTTAAAGGAATGTTCCAGAAAG------TTGTCTCATT-----TCTTCA--CTTTTGTG-AATGGACACAGAAGCTGTGCCTATTCATTTCATGGATTCTAGGTTAACTTG-TACAGAAAGGT----CATCATACTGTTCTTTGAAATGCACACGTTTTAGATTAATTCACAAACTACTTGAAAAGTTAGGCAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111108269 242 - 111193037 AAACAGTA-TTTTTAAGTAATTTTTGTGTTGCTCTGATGAGGCACGCCAGATTAAATCAGAGGA-----------GAATGTTTAATGGAATGTTCCAGAAAA------TTATCTTATT-----TCTTCA--CTTTTGTG-AATGAACACAGAATCTGTGTCTATTTATTTCACAGATTCTAGGTTAACTTG-TACAGAAAGGC----CACTATACTAGTCTTTGAAATGTACGTATTTTAGGTT-TTTTACAAACCATTTGAAAAGTTAGGCAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          366997 242 +    434444 CAACA-TA-TTTTCAAGTAATTTTTGTATTGCGATGATGAGGCAGGCTAGATTAAATCAGAGGG-----------GAAGATTTAATGGAATGTTCCAGAAAA------TTGTCTTATT-----TCTTCA--CTTTTGTG-AATGGACACAGAATCTGTATCTATTTATTTCACAGATTCTAGGTTAACTTG-TAGAGAAAGGC----CATTATACTATTCTTTGAAATGTACATGTTTTATGTTAATTTACAAACTATTTGAAAAGTTAGGCAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          414307 242 -    438202 CAACA-TA-TTTTCAAGTAATTTTTGTATTGCTATGATGAGGCAGGCTAGATTAAATCAGAGGG-----------GAAGATTTAATGGAATGTTCCAGAAAA------TTGTCTTATT-----TCTTCA--CTTTTGTG-AATGGACACAGAATCTGTATCTATTTATTTCACAGATTCTAGGTTAACTTG-TAGAGAGAGGC----CATTATACTGTTCTTTGAAATGTACATGTTTTATGTTAATTTACAAACTATTTGAAAAGTTAGGCAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66463819 242 +  90373283 AAACA-TA-TTTTCAAGTAATTTTTGTATTACTATGATGAGGCAGGCTAGATTAAATCAGAGGG-----------GAAGGTTTAATGGAATGTTCCAGAAAA------TTGTCTTATT-----TCTTCA--CTTTTGTG-AATGGACACAGAATCTGTATCTATTTATTTCACAGATTCTAGGTTAACTTG-TAGAGAAAGGC----CATTATACTACTCTTTGAAATGTACATGTTTTATGTTAATTTACAAACTATTTGAAAAGTTAGGCAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1514444 242 -   1547936 CAACA-TA-TTTTCAAGTAATTTTTGTATTGCTATGATGAGGCAGGCTAGATTAAATCAGAGGG-----------GAAGATTTAATGGAATGTTCCAGAAAA------TTGTCTTATT-----TCTTCA--CTTTTGTG-AATGGACACAGAATCTGTATCTATTTATTTCACAGATTCTAGGTTAACTTG-TAGAGAGAGGC----CATCATACTGTTCTTTGAAATGTACATGTTTTATGTTAATTTACAAACTATTTGAAAAGTTAGGCAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           29723 243 +    168452 AAACAGTA-TTTTAAAGTATTTTTTGTGTTGCTCTGATGAGGCACGCCAGATTAAATCTGAGGA-----------GAATATTTAATGGAATGTTCCAGAAAA------TTGTCTTATT-----TCCTCA--CTTTTGTG-AATGGACACAGAATCTGTGTCTATTTATTTCACAGATTCTGGGTTAACTTG-TACAGAAAGGC----CGCTATACTATTCTTTGAAATGTACGTGTTTTAGGTTAATTTACAAACTATTTGAAAAGTTAGGCAT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130389431 243 - 210400635 AAACAGTA-TTTTTAGATACTTACTTTATTGCCTTGGTGAGGCAAGCCAGATTAAGTCAGAGGA-----------AAATGTTTAATGGAATGTTCCAGAAAG------TTGTCTTATT-----TCTTCA--CTTTTGTG-AATGGACACAGAAGTTGTGCCTATTTATTTCATGGATTCTAGGTTAACTTG-TACAGAAAGGC----TATCGTACTGTTCTTTGAAATGTACGTGTTTTTGGTTAATTTACAAACTACTTGAAGAGTTAGGCGT
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19675379 267 -  27850971 AATCAGTAGTTTTTTAGTGATTTCTCTATTCCCATGATAAAGCAAACCAGATTAAATCAGAGGATAATATTTAATGGATATTTAATGGAATGTTCCAGAAAATGTTTTTTCTTTTTTT-----TTTTCAATCTTATGTG-AATGGGTACAGAATCTGTGTATATTTATTTCATGGATTTCAGGTTAACTTA-CGCAGAAAGGCCATTCATTATACTCTTCTCCAAAATGCAAATGTGTTTGGTTAATTTACAAACTATTTGAAAAGAGAGGCAT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79134886 192 -  85426708 AAACAATG-CTTTTTAATAATATCTCTATTACCATGATGAGGCGAGCTAGCTAAAATCAGAAGA-----------TA----TTAATGGAATGTTTCGGAAAA------TCATCTTATTTCTCATCTTCA--CTTTTATG-GATAGATATAGACTCTGT-------------ACTGATTTCAGGATAACTTT-TACAGAAAGGT----TACTTTATGACT------AATGC---------------------------------AACTGAGGCAT
i canFam3.chr2                 I 220 C 0
s dasNov3.JH570393               1774978 210 -   2296528 -GACAGTA-TTTTTAA-TGAAGTCTCTTTTGCTACAGTGAGGCAATTCAGATTAAGTCAGAAAA-----------AGTACTTAAATGGAATAGTCAAGAAGA---------------T-----ACACAG--CCTATGTA----------------------TGTTTCTTTAATGGATTTCAGCATAAGTTGCCACAGAAAGGC----CATTAAACTGTTCT--GAAAAATGCAAATTTTAAGTTGTTTTACAGACCAATTGAAAAATTAGACAT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1149395.000000
s hg38.chr14_GL000009v2_random     38320 175 +    201709 TTTC----TTTATC----TTTTATTTAAAATATACTATAAAACTGTGGAAATATTTAAATTTGAGATAACATGTAC--ATCAAAAATTGAGAGTTGAGAAAATTATCTTGATCCTGCCT-------------------------TCGGATTTTAAAaacagtttcactgagatatcattcacatt--tgagagagttcaaccatttaaaatg
s panTro5.chr9                  41714274 179 + 116767853 tttctttatttatc----ttttatttatAATATACTATAAAACTCTAGAAATATTTAGATTTGATATAGCATGTAC--ATCAAAAATTGAGAGTTGAGAAAATTATCTTGATCCTGCCT-------------------------TTGGATTTTCAAaacagtttcactgagatatcattcacatt--tcagagagttcaaccatttaaaatg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96063079 175 - 114479721 TTTC----TTTGTC----TTTTATTTAAAATATACTATAAAACTGTAGAAATATTTAAATTTGAGATAGCATGTAC--ATCAAAAATTGAGAGTTGAGAAAATTATCTTGATCCTGCCT-------------------------TGGGATTTTAAAaacagtttcactgagatatcattcacatt--tcagagagttcaaccatttaaaatg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1             522 177 +     53730 TTTCTTTATCTATC----TTTTATTTAAAATATACTGTAAAACTGTAGAAATATTTAGATTTGATATAGCATGTAC--ATCAAAAATTAAGAGTTGAGAAAATTATCTTGATCCTGCCT-------------------------TTGGAttttaaaa--agattcactgagatgtcattcacata--tcagacagttcaaccatttaaaatg
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40831962 179 + 122973662 TTTCTTTATTTACT----TTTTATTTAAAATATACTATAAAAGTGTAGAAATATTTAGATCTGATATAGTATGTAC--ATCAAAAATTGAGAGCTGAGAAAATTATCTCGATCCTGCCA-------------------------TTGGATTTTAAAaacagtttcactgagatataattcatgta--tcagacagttcaaccatttaaaatg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   524172 179 - 111343173 TGCC----TTCATCTTCATTTCATTTAAAATATACTGTAATGGCATAAAAATATTCAGATCTGATAGAGTATGTAC--ATCCAAAATAGAGAGCTGAGAAAATTTTCTTGATCCTACCA-------------------------TGGGATTTTAAAaacagtttcactgagagataattcacatg--tcagacagttcaaccatttaaaatg
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111108511 173 - 111193037 TTTC----TTTATC----TTTTATTTAAAATATACTATAAAACTGTAGAAATATTTAGATTTGATATAGTATGTAC--ATCAAAAATTGAGAGTTGATAAAATTATCTTGGTCCTGCCA-------------------------TTGGATTTTAAAAACGGTTTCACT--gatataattcacaca--tcagatggttcaacaatttaaaatg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          367239 175 +    434444 TCTC----TTTATC----TTTTATTTAAAATATACTATAAAAGTGTAGAAATACTTAGATCTGATATAGTATGTAC--ATCAAAAATTGAGAGCTGAGAAAATTATCTTGATCCTGCCA-------------------------TTGGATTTTAAAaacagtttcactgagatataattcacata--tcagacagttcaaccatttaaaatg
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          414549 175 -    438202 TCTC----TTTATC----TTTTATTTAAAATATACTATAAAAGTGTAGAAATATTTAGATCTGATATAGTATGTAC--ATCAAAAATTGAGAGTTGATAAAATTATCTTGGTCCTGCCA-------------------------TTGGATTTTAAAaacagtttcactgagatataattcacata--tcagacagttcaaccatttaaaatg
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66464061 175 +  90373283 TCTC----TTTATC----TTTTATTTAAAATATACTATAAAAGTGTAGAAATATTTAGATCTGATATAGTATGTAC--ATCAAAAATTGAGAGCTGAGAAAATTATCTTGATCCTGCCA-------------------------TTGGATTTTAAAaacagtttcactgagatataattcacata--tcagacagttcaaccatttaaaatg
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1514686 179 -   1547936 TCTCTTTATTTATC----TTTTATTTAAAATATACTATAAAAGTGTAGAAATATTTAGATCTGATATAGTATGTAC--ATCAAAAATTGAGAGCTGAGAAAATTATCTTGATCCTGCCA-------------------------TTGGATTTTAAAaacagtttcactgagatatcattcacata--tcagacagttcaaccattaaaaatg
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           29966 177 +    168452 TTTCTTTATTTATC----TTTTATTTAAAATATACCATAAAACTGTAGAAATATTTAGATTTGATATAGTATGTAC--ATCAAAAATTGAGAGTTGAGAAAATGATCATGGTCCTGCCA-------------------------TTAGATTTTGAAaacagtttcact--gatataattcacata--tcagacggttcaaccatttaaaatg
i colAng1.NW_012121088v1       C 0 C 0
s otoGar3.GL873538              19675646 204 -  27850971 TTCCTTCATTTTCC----TTTCATTTTAAGTATATTATGAAGAAACAGAAATATTCAGATCATATGTAGTATGTAC--CTATAAAATAGAGAATTAAGACAATTATCTAGATCCTGCCATTGGACTTTTATTTATTTTTTGCCCTTGGAtttttaaaacaactttattaaggtataattcacata--ccatattgtttatccatttaaagtg
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79135078 178 -  85426708 TTCCATCGTTTTCT----TTTCCTTTTAGATATATTATAAATGCATGGAAAAATTCAGATGATGTATAGTATATAC--ACCCAAAAGAGAGAATTAAGAAAATTATCTAGGTGGTGCCA-------------------------TTGGATttttttaa-aactttactgagatataatacatcta--ccatacactttaccaatttaacatg
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1775188 179 -   2296528 TTTTGTAATTTTCC----TTTCATTTTAGATATATTGTAAAATTATAGAAAATTTCAGATCATGTATAATATATACTTACTCAAAATATAGAATTAAGAAAATTATGTATATCCTATGA-------------------------TTGAAtttttaaa----ctttattgacctataattcacaaaattcatacagttcacccatttaaaggg
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130389674   0 - 210400635 C
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=370570.000000
s hg38.chr14_GL000009v2_random     38495 58 +    201709 tacaactcagtatctattagta-attcacag----------------------------------cattttcatcaccctgaaaagcaacgct
s panTro5.chr9                  41714453 59 + 116767853 tacaactcagtatctattagtatattcacag----------------------------------cattttcatcaccctgaaaagcaacccc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96063254 59 - 114479721 tacaactcagtatctattagtatattcacag----------------------------------cattttcatcaccctggaaagcaacccc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1             699 59 +     53730 tacaactcagtgtctattagtatgttcacag----------------------------------cattttcatcaccctgaaaagtgacccc
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40832141 59 + 122973662 tgcaactcagtatctgttagtatattcacag----------------------------------cattttcatcaccctcaaaagcgacccc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   524351 93 - 111343173 tacgactcagtgtctgttagtatattcacagcattgtgtaatcatcagcacaatcaatgctagaacattttcaccactctgaaaagcaacccc
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111108684 58 - 111193037 tgcaactcagtat-tattagtatattcacag----------------------------------cattttcatcaccctgaaaagcaacccc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          367414 59 +    434444 tgcaactcagtatctattagtatattcacag----------------------------------catttttgtcaccctgaaaagcaacccc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          414724 59 -    438202 tgcaactcagtatctattagtatattcacag----------------------------------catctttgtcaccctgaaaagcaacccc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66464236 59 +  90373283 tgcaactcagtatctattagtatattcacag----------------------------------catttttgtcaccctgaaaagcaacccc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1514865 59 -   1547936 tgcaactcagtatctattagtatattcacag----------------------------------cattttcatcaccctgaaaagcaacccc
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           30143 58 +    168452 tgcaactcagtat-tattagtatattcacag----------------------------------cattttcatcacactgaaaagcaacccc
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130389674 89 - 210400635 tacaactcagtgtct----ttatattcacagcgttgtgtaatcatcaccacagtaaatgttagaacatatctacccctctgaaaagcaacccg
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19675850 93 -  27850971 cacaactcaccatctcttagcattttcacagagttgtataactgtcaccacaaacaatgtcagaacttttctatcaccctgaaaagaatcctt
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79135256 83 -  85426708 tgtagtt----gtctctgagtacatttatagagttgtgcgactctcactgccatcagag------catttttatcaccctgaaaagaaacACT
i canFam3.chr2                 C 0 I 116
s dasNov3.JH570393               1775367 85 -   2296528 tagaattcaatggctttt-----gtttagagagttctgctattatcagtataatcaattttagaacattttcatctc---aagaagaaactcc
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=71850.000000
s hg38.chr14_GL000009v2_random     38553 9 +    201709 acatctcct
s panTro5.chr9                  41714512 9 + 116767853 acatctcct
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96063313 9 - 114479721 acatctcct
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1             758 9 +     53730 acatctcct
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40832200 9 + 122973662 acatctcct
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   524444 9 - 111343173 acatctctt
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111108742 9 - 111193037 acatctcct
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          367473 9 +    434444 acatctcct
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          414783 9 -    438202 acatctcct
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66464295 9 +  90373283 acatcgcct
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1514924 9 -   1547936 acatctcct
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           30201 9 +    168452 acatctcct
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130389763 9 - 210400635 acatctctt
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19675943 9 -  27850971 gaatcactt
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1775452 9 -   2296528 acatcTTTT
i dasNov3.JH570393             C 0 I 1688
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e canFam3.chr2                  79135339 116 -  85426708 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=228599.000000
s hg38.chr14_GL000009v2_random     38562 35 +    201709 aggcatgactgcagcc------ttcctccatgtccctccac
s panTro5.chr9                  41714521 35 + 116767853 aggcatgactgcagcc------ttcctccatgtccctccac
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96063322 35 - 114479721 aggcatgactgcagcc------ttcctccatgtccctccac
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1             767 35 +     53730 aggcatgactgcagcc------ttcctccatgtccctccac
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40832209 35 + 122973662 aggcatgactgcaacc------ttcttccatgtccctccac
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   524453 35 - 111343173 agccgtgactgcaacc------actctccatgtctctccat
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111108751 35 - 111193037 aagcatgactgcaacc------ttcctccgtgtctcttcac
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          367482 35 +    434444 aggcatgactgcagcc------ttcctccgtgtcccctcac
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          414792 35 -    438202 aggcatgactgcagcc------ttcctccatgtcccttcac
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66464304 35 +  90373283 aggcatgactgcaact------ttcctccatgtcccttcac
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1514933 35 -   1547936 aggcgtgactgcagcc------ttcctccatgtcccttcac
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           30210 35 +    168452 aggcatgactgcaacc------ttcctccatgtctcttcac
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130389772 34 - 210400635 agtcatgactgtagcc------cctctccatg-ccctctac
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19675952 41 -  27850971 agccatcaccaccaccctctattccttccatgtccctccac
i otoGar3.GL873538             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e canFam3.chr2                  79135339 116 -  85426708 I
e dasNov3.JH570393               1775461 1688 -   2296528 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=977618.000000
s hg38.chr14_GL000009v2_random     38597 144 +    201709 ctacctctgttgtaggcaaccacca----tctatctgct-t-ttgtctccatatgttcgcctgttctgcctatttcatatacatagagttatacaatacgtagtcctttgtgactggct-t-tttcact-tagcataatgttttcagaa-ttca
s panTro5.chr9                  41714556 144 + 116767853 ctacccctgttgtaggcaaccacca----tctatctact-t-ttgtctccatatgtttgcctgttctgcatatttcatatacatagagttatacaatatgtagtcctttgtgactggct-t-tatcact-tagcatagtgttttcagaa-ttca
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96063357 144 - 114479721 ctacccctgttgtaggcaaccacca----tctatctact-t-ttgtctccatatgtttgcctgttctgcatatttcatatacatagagttatacaatatttagtcctttgtgactggct-t-tatcact-tagcataatgttttcagaa-ttca
i panPan2.chr13                C 0 I 4
s gorGor5.CYUI01002030v1             802 140 +     53730 ctacccctgttgtaggcaaccaccg----tcta----ct-t-ttgtctccatatgtttgcctgttctgcatatttcatatacatagagttatacaatatgtagtcctttgtgagtggct-t-tttcact-tagcataatgttttcagaa-ttca
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40832244 140 + 122973662 ctacccctgttgtaggcaaccacca----tcta----ct-t-ttgtctccataggtttgcctgttctgcatatttcatatacatagagttatacaatatgtagtcatttatgactggct-t-tttcacg-tagctgaatgttttcagaa-ttca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   524488 142 - 111343173 ctaccccagttgtaggcaaccacca----tccc----gt-t-ttgtctccatagatgtgtatggtctgcatattttatatacacagagtcatacaatatgaagtcctttctgactggctgt-tttcact-tagcagaatgttttcagaatttta
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111108786 140 - 111193037 ctacccctgttataggcaaccacca----tcta----ct-t-ttgtctccacaggttggcctgttctgtgtatttcatatacatagagttatacaatctgtagtcctttgtgactggct-t-tttcact-tagcataatattttcagaa-ttca
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          367517 140 +    434444 ctacccctgttgtgggcaaccacca----tcta----cc-t-ttgtctccataggtttgcctgttttgcatatttcacatacatagagttctacaatatgtcgtcctttgtgactggct-t-tttcact-tagcataatgtttccagaa-ttca
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          414827 140 -    438202 ctacccctgttgtaggcaaccacca----tcta----cc-t-ttgtctccataggtttgcctgttttgcatatttcacatacatagagttctacaacgtgtcgtcctttgtgactggct-t-tttcact-tagcataatgtttccagaa-ttca
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66464339 140 +  90373283 ttacccctgttgtaggcaaccacca----tcta----ct-t-ttgtctccacaggttggcctgttctgtgtatttcatatatatagagttatacaatctgtagtcctttgtgactggct-t-tttcact-tagcataatgtttccagaa-ttca
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1514968 140 -   1547936 ctacccctgttgtaggcaaccacca----tcta----cc-t-ttgtctccataggtttgcctgttttgcatatttcacatacatagagttctacaatatgtcatcctttgtgactggct-t-tttcact-tagcataatgtttccagaa-ttca
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           30245 140 +    168452 ctacccctgttataggcagccacca----tcta----ct-t-ttgtctccataggttggcctgttctgtgtatttcatatacatagagttatacaatctgtagtcctttgtgactggct-t-tttcact-tagcataatattttccgaa-ttca
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130389806 138 - 210400635 ctaccccagttgtaggtaaccacca----tcta----ct-t-tggtctctatagatttgcatgttcttcatatgttatatagatagagtcatactatgtgaagtcctttatgactggct-c-tttgact-cagcgtaatgttttcagaa-tt--
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19675993 142 -  27850971 cttccccagtcctaggcatccacca----tcta----ttat-ttgtatctatagatttatctgttctggatatttcatataaatagaatcatatactatgtagtcctttatgactggct-c-attttctgtagggtagtgttttcagag-tgca
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79135455 139 -  85426708 ctgcccctgacct--gcagcaaccaagagtcta----ct-tcctgtctctatagagttgcctattgtgaatatttcatataaagagagtcacacaatgtgtggtcctttgtgacttgct-tctttcact------tcctgtttttgggg-ttca
i canFam3.chr2                 I 116 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e dasNov3.JH570393               1775461 1688 -   2296528 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=-32231.000000
s hg38.chr14_GL000009v2_random     38741 10 +    201709 ctt-agcataa
s panTro5.chr9                  41714700  4 + 116767853 t----gc---a
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1             942  5 +     53730 ----tgcat--
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40832384  4 + 122973662 ----tgca---
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   524630  4 - 111343173 ----tcca---
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111108926  4 - 111193037 ----tgca---
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          367657  4 +    434444 ----tgca---
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          414967  4 -    438202 ----tgca---
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66464479  4 +  90373283 ----tgca---
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1515108  4 -   1547936 ----tgca---
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           30385  4 +    168452 ----tgca---
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130389944  7 - 210400635 -ttatcca---
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19676135  4 -  27850971 --tctg-----
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79135594  4 -  85426708 --cctg-----
i canFam3.chr2                 C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e dasNov3.JH570393               1775461 1688 -   2296528 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e panPan2.chr13                 96063501  4 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=6872101.000000
s hg38.chr14_GL000009v2_random     38751 1076 +    201709  
s panTro5.chr9                  41714704 1066 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96063505 1073 - 114479721  
i panPan2.chr13                I 4 C 0
s gorGor5.CYUI01002030v1             947 1073 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40832388 1070 + 122973662  
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   524634 1067 - 111343173  
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111108930 1075 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          367661 1079 +    434444  
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          414971 1084 -    438202  
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66464483 1080 +  90373283  
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1515112 1083 -   1547936  
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           30389 1036 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130389951 1090 - 210400635  
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19676139 1079 -  27850971  
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79135598 1218 -  85426708  
i canFam3.chr2                 C 0 I 289
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090  234 -   6597006 I
e dasNov3.JH570393               1775461 1688 -   2296528 I
e cebCap1.NW_016107851v1         1072359  206 +   1314817 I
e saiBol1.JH378105              64659864  193 -  72162052 I
e ponAbe2.chr21_random           2920455  481 +   4212913 I

a score=1106987.000000
s hg38.chr14_GL000009v2_random     39827 161 +    201709 ATG------------------------------TCCCCCATTTGCTGCAACTCTC----AGTGGT---AAGAATGA-TTCAGTGCAGC---TATAGGAGAGTACTTCCATTGGCATGCCACCTGCCTAAAATACACAATTTTGTTAAGATATACA----A------T------AAAATTA-TTATGCtaatagcaaatattt--tatgtagctcactatgt
s panTro5.chr9                  41715770 161 + 116767853 ATG------------------------------TCCCCCATTTGCTGCAACTCTC----AGTGGT---AAGAATGA-TTCAGAGCAGC---TATAGGAGAGTACTTCCATTGGCATGCCACCTGCCTAACATACACAATTTTGTTAAGATATATA----A------T------AAAATTA-TTATGCtaatagcaaatattt--tatgtagctcactatgt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96064578 161 - 114479721 ATG------------------------------TCCCCCATTTGCTGCAACTCTC----AGTGGT---AAGAATGA-TTCAGTGCAGC---TATAGGAGAGTACTTCCATTGGCATGCCACCTGCCTAACATACACAATTTTGTTAAGATATATA----A------T------AAAATTA-TTATGCTAATAGCAAATATTT--TATGTAGCTCACTATGT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2020 161 +     53730 ATG------------------------------TCCCCCATTTGCTGCAACTCTC----AGTGTT---AAGAATGA-TTCAGTGCAGC---TATAGGAGACTACTTCCATTGGCATGCCACCTGCGTAAAATACACAATTTTGTTAAGATATACA----A------T------AAAATTA-TTATGCTAATAGCAAATATTT--TATGTAGCTCACTATGT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40833458 164 + 122973662 ATG------------------------------CCCCCCATTTGCTTCAACTCTC----AGTGGTGAAAAGAATGA-TTCAGTGCAGC---TATAGGAGACTACTTCCATTGGCATGCCACCTACCTAACATACACAATTTTGTTAAGATATACA----A------T------AAAATTA-TTATGCTAATAGCAAATATTT--TATGTAGCTCACTATGT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   525701 166 - 111343173 GCA------------------------------CTCCCCATTTGCTGCCGCTTTC----AGTGGTGTGAAGAATGA-TTCAGTGCAGC---TCTAGGAGACCACTCCCGTTGGAATGCCACCTGCCTAACGTGTACAA--TTGTCAAGATATAAAAAAGT------A------AAAATTA-CCATGCTAATAGCAAATATTA--TCTGTAGCTCACTATGT
i rheMac8.chr15                C 0 I 341
s macFas5.chr13                111110005 165 - 111193037 ATG------------------------------CCCCCCATTTGCTGCAGCTCTC----AGTGGTGAGAAGAATGA-TTGAGTGCAGC---TATAGGAAACTAGTTCCATTGGCATGCCACCTGCCTAACATACACAATTTTGTTAAGATATACA---GA------T------AGAATTA-TTATACtaatagcaaatattt--tatgtagctcactatgt
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          368740 162 +    434444 ATG-------------------------------CCCCCATTTGCTGCAACTCTC----AGTGGTGAGAAGAATGA-TTGCATGCAGT---TATAGGAGACCACTTCCATTGGCATGCCACCTGCCTAACATACACAATTTTGTTAAGATACACA----A------T------TCAATTA-TTATGCTAGGaacaaatattt--t-tgtagctcactatgt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          416055 162 -    438202 ATG-------------------------------CCCCCATTTGCTGCAACTCTC----AGTGGTGAGAAGAATGA-TTGCATGCAGT---TATAGGAGACCACTTCCATTGGCATGCCACCTGCCTAACATACACAATTTTGTTAAGATACACA----A------T------TAAATTA-TTATGCTAGGAGCAaatattt--t-tgtagctcactatgt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66465563 163 +  90373283 ATG------------------------------CCCCCCATTTGCTGCAGCTCTC----AGTGGTGAGAAGAATGA-TTGCGTGCAAT---TATAGGAGACCACTTCCATTGGCTTGCCACCTGCCTAACATACACAATTTTGTTAAGATATACA----A------T------TAAATTA-TTATACtagtagcaaatattt--t-tgtagctcactatgt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1516195 162 -   1547936 ATG-------------------------------CCCCCATTTGCTGCAACTCTC----AGTGGTGAGAAGAATGA-TTGCATGCAGT---TATAGGAGACCACTTCCATTGGCATGCCACCTGCCTAACATACACAATTTTGTTAAGATACACA----A------T------TAAATTA-TTATGCTAGGAGCAaatattt--t-tgtagctcactatgt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           31425 165 +    168452 ATG------------------------------CCCCCCATTTGCTGCAGCTCTC----AGTGGTGAGAAGAATGA-CTGAGTGCAGC---TATAGGAGACTACTTCCATTGGCATGCCGCCTGCCTAACGTACACAATTTTGTTAAGATATACG---AA------T------AGAATTA-TTATGCTAATAGCAACTATTT--TATGTAGCTCCCTATGT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130391041 168 - 210400635 ATA------------------------------CTTCCCATTTGCTGCCACTTTC----AGTGGTATGAAGAGTGA-TTCAGCGCAGC---TATAGGTTGCAACTTCCATTGGAATGCCACCTGCCTAACATATGTAA--TTGTTAAGATATAAA----AAGTGGTA------AAAATCA-TCATGCtaatagcaaatatta--tctgtagcttactatgc
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19677218 172 -  27850971 ATGAAGTACTGGGTATGCATTCTGGGCCTTGCCCTCCCCATTTGCTGCCATTGTG----GGTGGCATGAAGAATGA-TTCAGTGCAAC---TATGGGAGACCACTTACACTGGCCTGCTGCTTGCCTAAAAT---------------------------A------T------AAAACTAGTAATACtaatagcaaacatta--tatgtagctcactatgg
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79137105 175 -  85426708 ATG------------------------------CTCCCCATTTGCTACCACTTTCAGTAAGTAGTATGAAGAATGATTTCAATATAACTTGTGTAAGAGAGTACTTCCATTGGCCTGCTATCTGCCTAAAATATCAAGTATTGTTAAAACATAAA----A------TACAGCAACAACAA-TAATGCTAATTGCAGACACT-----Tagaatttggtatgt
i canFam3.chr2                 I 289 C 0
s dasNov3.JH570393               1777149 174 -   2296528 ATG------------------------------CTCCCCATTTGATGCTACTTTT----GATGGTGTGAAAAGTGA-TTCATTGTAACATGTATAGGAGGAGGCTTCTGTTGACAGACCAACAGCCTAAAATACCAAATTTTATTAGAACACAAA----G------TACGTTAACAATAA-CAATGCTACCAGAAaacatttgataaatagctcactctg-
i dasNov3.JH570393             I 1688 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=278346.000000
s hg38.chr14_GL000009v2_random     39988 43 +    201709 tccacgtagtcttctaagtgtttcatgt-TAG-TCCCCAGTTAAA
s panTro5.chr9                  41715931 43 + 116767853 tctatgtagtcttctaagtgcttcatgt-TAG-TCCCCAGTTAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96064739 43 - 114479721 TCTACATAGTCTTCTAAGTGCTTCATGT-TAG-TCCCCAGTTAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2181 43 +     53730 TCCATGTAGTCTTCTAAGTGCTTCATGT-TAG-TCCCCAGTTAAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40833622 38 + 122973662 TCCACGTA-----CTAAGTGCTTCACGT-TAG-TCCCCAGTTAAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111110170 43 - 111193037 tccacgtgctcttctaagggcttcatgt-TAG-TCCCCAGTTAAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          368902 43 +    434444 tccatgtactcttctaagtgcttcatgt-TAG-TCCCCAGTTAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          416217 43 -    438202 tccatgtactcttctaagtgcttcatgt-TAG-TCCCCGGTTAAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66465726 43 +  90373283 tccacgtactcttctaagggcttcatgt-TAG-TCCCCACTTAAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1516357 43 -   1547936 tccatgtactcttctaagtgcttcatgt-TAG-TCCCCGGTTAAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           31590 43 +    168452 TCCACGTACTCTTCTAAGGGCTTCATGT-TAG-TCCCCAGTTAAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130391209 43 - 210400635 actatgtactcatctaagtgcttcaggt-tag-tccctggtttaa
i calJac3.chr1                 C 0 I 221
s otoGar3.GL873538              19677390 44 -  27850971 gccacatgctcttccaaggactttgcat-aaattctccagtttaa
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79137280 44 -  85426708 gccacatactcttctaagtagttcatgtatat-tccctaatttaa
i canFam3.chr2                 C 0 I 2601
s dasNov3.JH570393               1777323 43 -   2296528 -ccagggactcttctaagtactttacatatat-tccctaatttaa
i dasNov3.JH570393             C 0 I 2251
e rheMac8.chr15                   525867 341 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=6600.000000
s hg38.chr14_GL000009v2_random     40031 1 +    201709 C
s panTro5.chr9                  41715974 1 + 116767853 C
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96064782 1 - 114479721 C
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2224 1 +     53730 C
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40833660 1 + 122973662 C
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111110213 1 - 111193037 C
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          368945 1 +    434444 C
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          416260 1 -    438202 C
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66465769 1 +  90373283 C
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1516400 1 -   1547936 C
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           31633 1 +    168452 C
i colAng1.NW_012121088v1       C 0 C 0
s otoGar3.GL873538              19677434 1 -  27850971 c
i otoGar3.GL873538             C 0 I 1477
e calJac3.chr1                 130391252 221 - 210400635 I
e rheMac8.chr15                   525867 341 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e canFam3.chr2                  79137324 2601 -  85426708 I
e dasNov3.JH570393               1777366 2251 -   2296528 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=5005.000000
s hg38.chr14_GL000009v2_random     40032 1 +    201709 A
s panTro5.chr9                  41715975 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96064783 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2225 1 +     53730 A
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40833661 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111110214 1 - 111193037 A
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          368946 1 +    434444 A
i macNem1.NW_012012823v1       C 0 I 2
s cerAty1.NW_012002921v1          416261 1 -    438202 A
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66465770 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1516401 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           31634 1 +    168452 A
i colAng1.NW_012121088v1       C 0 C 0
e calJac3.chr1                 130391252 221 - 210400635 I
e rheMac8.chr15                   525867 341 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e canFam3.chr2                  79137324 2601 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1777366 2251 -   2296528 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=30624.000000
s hg38.chr14_GL000009v2_random     40033  5 +    201709 CCTGG----------------------------------
s panTro5.chr9                  41715976  5 + 116767853 CCAGG----------------------------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96064784  5 - 114479721 CCTGG----------------------------------
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2226  5 +     53730 CCTGG----------------------------------
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40833662 39 + 122973662 CCTGGTTGGAGGAggtggctcatgccagtaatcctagca
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111110215 39 - 111193037 CCTggttgggggaggtgactcatgccagtaatcctagca
i macFas5.chr13                C 0 C 0
s cerAty1.NW_012002921v1          416262 39 -    438202 CCTggttgggggagatgactcatgccaataatcctagca
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66465771 39 +  90373283 CCTggttgggggaggtgactcatgccaataatcctagca
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1516402 39 -   1547936 CCTggttgggggaggtgactcatgccaataatcctagca
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           31635 39 +    168452 CCTAGTTgggggaggtgactcatgccagtaatcctagca
i colAng1.NW_012121088v1       C 0 C 0
e calJac3.chr1                 130391252 221 - 210400635 I
e rheMac8.chr15                   525867 341 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6430090 234 -   6597006 I
e canFam3.chr2                  79137324 2601 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1777366 2251 -   2296528 I
e cebCap1.NW_016107851v1         1072359 206 +   1314817 I
e saiBol1.JH378105              64659864 193 -  72162052 I
e macNem1.NW_012012823v1          368947  2 +    434444 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=7098.000000
s hg38.chr14_GL000009v2_random     40038 1 +    201709 T
s panTro5.chr9                  41715981 1 + 116767853 t
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96064789 1 - 114479721 t
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2231 1 +     53730 T
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40833701 1 + 122973662 t
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111110254 1 - 111193037 t
i macFas5.chr13                C 0 C 0
s cerAty1.NW_012002921v1          416301 1 -    438202 t
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66465810 1 +  90373283 t
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1516441 1 -   1547936 t
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           31674 1 +    168452 t
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64660057 1 -  72162052 t
i saiBol1.JH378105             I 193 C 0
s cebCap1.NW_016107851v1         1072565 1 +   1314817 t
i cebCap1.NW_016107851v1       I 206 C 0
s aotNan1.NW_018488791v1         6430324 1 -   6597006 t
i aotNan1.NW_018488791v1       I 234 C 0
e calJac3.chr1                 130391252 221 - 210400635 I
e rheMac8.chr15                   525867 341 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79137324 2601 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1777366 2251 -   2296528 I
e macNem1.NW_012012823v1          368947 2 +    434444 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=174886.000000
s hg38.chr14_GL000009v2_random     40039 27 +    201709 tttggaaggctg-aagcaggaggatcgt
s panTro5.chr9                  41715982 27 + 116767853 ttggaaatgccg-aggcaggaggatcgc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96064790 26 - 114479721 tt-ggaaggctg-aggcaggaggatcgc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2232 27 +     53730 tttggaaggctg-aggcaggaggattgc
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40833702 27 + 122973662 tttggaaggcta-aggcaggaggatggc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111110255 27 - 111193037 tttagaaggctg-aggcaggaggatcgc
i macFas5.chr13                C 0 C 0
s cerAty1.NW_012002921v1          416302 27 -    438202 tttggaaggctg-aggcaggaggatcgc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66465811 27 +  90373283 tttagaaggctg-aggcaggaggatcgc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1516442 27 -   1547936 tttggaaggctg-aggcaggaggatcgc
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           31675 28 +    168452 tttagaaggctgaaggcaggaagatcac
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130391473 27 - 210400635 tttgggaggctg-aggcaggagcagtgc
i calJac3.chr1                 I 221 C 0
s saiBol1.JH378105              64660058 27 -  72162052 tttggaagcctg-aggcaggagaatcac
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1072566 27 +   1314817 tttcgaagcctg-aggcaggaggatcac
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6430325 27 -   6597006 tttggaagcctg-aggcaggaggatcac
i aotNan1.NW_018488791v1       C 0 C 0
e rheMac8.chr15                   525867 341 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79137324 2601 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1777366 2251 -   2296528 I
e macNem1.NW_012012823v1          368947  2 +    434444 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=416556.000000
s hg38.chr14_GL000009v2_random     40066 70 +    201709 ttgagcccatgagtttgagaccagccagagcaata-t-agtgagaccc--tgtctctaaaaaaaaaaaaaaaaa
s panTro5.chr9                  41716009 65 + 116767853 ttgagcccatgagtttgagagcagccagagcaata-t-agtgagaccc--tgtccct-----aaaaaacaaaac
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96064816 65 - 114479721 ttgagcccatgagtttgagagcagccagagcaata-t-agtgagaccc--tgtccct-----aaaaaacaacaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2259 65 +     53730 ttgagcccaggagtttgagaccagccagagcaata-t-agtgagaccc--tgtctct-----aaaaaaaaaaaa
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40833729 65 + 122973662 ttgagcccaggagtttgagatcagccagagcaata-t-agtgagacct--tgtcttt-----aaaaaaaaaaaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   526208 66 - 111343173 ttgagcccaggaattggagaccagccagagcaaca-taagtgagaccc--tgtctct-----acaaaaaaaaaa
i rheMac8.chr15                I 341 I 5
s macFas5.chr13                111110282 60 - 111193037 ttgagcccaggagtttgagaccagccagagcaata-t-agtgagaccc--tgtctct-----aaaaaaa-----
i macFas5.chr13                C 0 C 0
s cerAty1.NW_012002921v1          416329 61 -    438202 ttgagcccaggagtttgagaccagccagagcaata-t-agtgagatcc--tgtctct-----taaaaaca----
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66465838 60 +  90373283 ttgagcccaggagtttgagaccagccagagcaata-t-agtgagaccc--tgtctct-----taaaaac-----
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1516469 61 -   1547936 ttgagcccaggagtttgagaccagccagagcaata-t-agtgagatcc--tgtctct-----tagaaaca----
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           31703 60 +    168452 ttgagcccaggagtttgagaccagccagagcaata-t-agtgagaccc--tgtctct-----acaaaaa-----
i colAng1.NW_012121088v1       C 0 I 2
s calJac3.chr1                 130391500 66 - 210400635 ttgagcccagaaatttgagaccagccagagcaatata-agtgagaccctgtgtctac-----caaaaaaaaa--
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64660085 49 -  72162052 --------------ttgagaccagccacagcaata-a-agtgagaccc--tctctaa-----aaaaaaaaaa--
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1072593 63 +   1314817 ctgagaccaggagtttgagaccagccacagcaata-a-agtgagaccc--tgtctac-----aaaaaaaaaa--
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6430352 63 -   6597006 ttgaaaccaggagtttgagaccagccacagcaata-a-agtgagaccc--tgtctac-----aaaaaaaaaa--
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79137324 2601 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1777366 2251 -   2296528 I
e macNem1.NW_012012823v1          368947  2 +    434444 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1302882.000000
s hg38.chr14_GL000009v2_random     40136 157 +    201709 --aaaaaaaaaa-ttaaacacttatctgaggcatggtggtgcacgcctgtagtcccagctacattgggaggctgtggtaggagggtcgtttgagcttggaatattgaggctgtagtgaacagtgatcaagccgctgcgctccaggctgggtaacagaggg
s panTro5.chr9                  41716074 157 + 116767853 --aaaaaaattt-ttaaacacttagctgaggcatggtggggcatgcctgtagtcccagctacactgggaggctgtggtaggagggtcgtttgagcttggaatattgaggctgtagtgaatggtgatcaagccactgcactccagcctgggtaacagaggg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96064881 157 - 114479721 --aaaaatattt-ttaaacacttagctgaggcatggtgctgcatgcctgtagtcccagctacactgggaggctgtggtaggagggtcgtttgagcttggaatattgaggctgtagtgaatggtgatcaagccactgcactccagcctgggtaacagaggg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2324 157 +     53730 --aaaaattttt-ttaaacacttagctgaggcatggtggtgcatgcctgtagtcccagctacattgggaggctgtggtaggagggtcgtttgagcttggaatattgaggctgcagtgagcagtgatcaagccactgcactccagcctaggtagcagaggg
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40833794 148 + 122973662 --a----------ttaaatacttagctgaggcatggtggtgcataactgtagtcccagctacattgggaggctgtggtaggagggtcgcttgagcttggaatattgaggctgcagtgagtggtgatcaagccactgcactccagtctgggtaacagagcg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   526279 154 - 111343173 ----aaaaaaat-tt-aacagttaactgaggcatggtggtgcatgcctctaatgccagctacattgggaggctgtggtgggagggtcgcttgagcttggaatatcaaagctgcagtgagcagtgatcaagccactgcactccagcctgggtaacagagcg
i rheMac8.chr15                I 5 C 0
s macFas5.chr13                111110342 156 - 111193037 --gaaaaaaaat-ttaaacactta-ctgaggcatggtggtgcatgcctgtagtcccagctacaatgggaggctgtggtaggagggtcacttgaacttggaatattgggactgcagtgagtggtgatcaagcctctgcactccagcctgggtaacagagcg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          368949 157 +    434444 --AAAaaaaaat-ttaaatacttagctgacgcatggtggtgcatgcccgtagtcccagctacattgggaggctgtggtaggaggatcacttgagcttggaatattgaggctgcagtgagcggtgatgaagccactgcactccagcctgggtaacagagcg
i macNem1.NW_012012823v1       I 2 C 0
s cerAty1.NW_012002921v1          416390 157 -    438202 --aaaaaaaaat-ttaaatacttagctgacgcatggtggtgcatgcctgtagtcccagctacattgggaggctgtggtaggaggatcacttgagcttggaatattgaggctacagtgagcggtgatgaagccactgcactccagcctgggtaacagagcg
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66465898 156 +  90373283 ---aaaaaaaat-ttaaatacttagctgatgcatggtggtgcatgcctgtagtccgaactacattgggaggctgtggtaggaggatcacttgagcttggaatattgaggctacagtgagaggtgatgaagccactgcactccagcctgggtaacagagtg
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1516530 157 -   1547936 --aaaaaaaaat-ttaaatacttagctgacgcatggtggtgcatgcctgtagtcccagctacactgggaggctgtggtaggaggatcacttgagcttggaatattgaggctacagtgagcggtgatgaagccactgcactccagcctgggtaacagagcg
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           31765 156 +    168452 --aataaataaa-taaaacactta-ctgaggcatggtggtgcatgcctgtagtcccagctacaatgggaggctgtgataggagggtcacttgaacttgaaatactgggactgcagtgagcggtgatcaagcctctgcactccagcctgggtaacagagca
i colAng1.NW_012121088v1       I 2 C 0
s calJac3.chr1                 130391566 156 - 210400635 aaacataaaagt----aatagttagctgagtcatggtggtgagttcctgtaatcccagctatattgggaggctgtggtaggagggtcgcttgatcttgggatatcgaggctgcagtgagcagtgatcaaaccactgcattctaccctgggtaacagagtg
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64660134 144 -  72162052 aaaaaaaaagtt-taaaacaattggctgaggcatggtggtgcatgcctgtagtttcagctac-ctgggaggctgtggtaggaagatcacttaagcttgggagatcaaggctgcagtgagcagtgattcag--------------cctgggtgacagagtg
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1072656 159 +   1314817 aaaaaaaaaagtttaaaacaattggctgagacatgctggtgcatgcctgtagcttcagctgc-ctgggaggctgtggtaggaagatcacttgagcttgggagatcaaggctgcagtgtgcagtgatcagggcactgcacttcagcctgggtgacagagtg
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6430415 158 -   6597006 aaaaaaaacgtt-taaaacaattggctgaggcatggtggtgcgtgcctgtagtttcagctac-ctgggaggctgtggtaggaggatcacttgagcttgggagatcaaggctgcagtgagcagtgatcaggccactgcacttcagcctgggtcacagagtg
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e canFam3.chr2                  79137324 2601 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1777366 2251 -   2296528 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=85670.000000
s hg38.chr14_GL000009v2_random     40293 15 +    201709 agact-c-tgtctcata
s panTro5.chr9                  41716231 15 + 116767853 agact-c-tgtctcata
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065038 15 - 114479721 agact-c-tgtctcata
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2481 15 +     53730 agact-c-tgtctcata
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40833942 15 + 122973662 agact-c-tgtctcata
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   526433 15 - 111343173 agact-c-tgtctcata
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111110498 13 - 111193037 aga---c-tgtctcaTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369106 15 +    434444 agact-c-tgtctcata
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          416547 16 -    438202 agactct-tgtctcata
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466054 15 +  90373283 agact-c-tgtctcata
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1516687 16 -   1547936 aggct-cttgtctcata
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           31921 15 +    168452 agact-c-tgtctcaTA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130391722 15 - 210400635 agact-c-tgtctcata
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64660278 14 -  72162052 aaact-g-tctcaca-a
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1072815 14 +   1314817 aaact-g-tctcaCG-A
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6430573 14 -   6597006 aaact-g-cctcatg-a
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79139925 15 -  85426708 AGACT-T-TGTAAGAAT
i canFam3.chr2                 I 2601 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1777366 2251 -   2296528 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=551236.000000
s hg38.chr14_GL000009v2_random     40308 57 +    201709 aataaaaCGTTTTGTATAGATTCCCATAGAAGTGAGTTAGACATCAGTCATAGAATT
s panTro5.chr9                  41716246 57 + 116767853 aaTCAAACGTTTTGTATAGATTCCCATAGAAGTGAGTTAGGCATCAATCATAGAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065053 57 - 114479721 aaTCAAACGTTTTGTATAGATTCCCATAGAAGTGAGTTAGGCATCAATCATAGAATT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2496 57 +     53730 aataaaaCATGCTGTATAGATTCCCATAGAAGTGAGTTAGATATCAGACATAGAATT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40833957 57 + 122973662 aataaaaCATTTTGTATAGATTCCCATAGAAGTGAGTTAGACATCAGGCATAGAATT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   526448 57 - 111343173 aataaaaTATTTTGTATAGATTCCCACAGAATTTAGTTAGACATCAGGCATAGAATT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111110511 57 - 111193037 AGTAAAACGTTCTGTATAGATTCCCATAGAATTGAGTTAGACATCAGGCATAGAATT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369121 57 +    434444 aataaaaaGTTTTGTATAGATTCCCATAGAAGTGAGTTAGACATCAGGCTTAGAGTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          416563 57 -    438202 aataaaaaGTTTTGTATAGATTCCCATAGAAGTGAGTTAGACATCAGACTTAGAGTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466069 57 +  90373283 aataaaaaGTTTTGTATAGATTCCCACAGAAGTGAGTTAGACATCAGGCTTAGAGTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1516703 57 -   1547936 aataaaaaGTTTTGTATAGATTCCCATAGAAGTGAGTTAGACATCAGGCTTAGAGTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           31936 57 +    168452 AGTAAAACATTTTGTATAGATTCCCATAGAATTGAGTTAAACATCAGGCATAGAATT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130391737 57 - 210400635 aataaaaTGTGTTGTATAGATTCTCATATAAGTGAGTTAGACATCAGGCATAGACTT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64660292 57 -  72162052 aataaaCAATTTTGTATAGATTCCTGTAGAAATGACTTAGAAATCAGGCATAGAATT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1072829 57 +   1314817 AATGAACAATTTTGTGTAGATTCCCGTAGCAATGAGTTAGAAATCAGGCATAGAATT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6430587 57 -   6597006 aataaaCAATTTTGTATAGATTCCCGTAGAAATGACTTAGAAATCAGGCATAGAATT
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79139940 57 -  85426708 ATCCATAGATATTATGTAGATTCCTAGAGAAATGAATTAGAGTAATGGTATAAAATT
i canFam3.chr2                 C 0 I 442
s dasNov3.JH570393               1779617 57 -   2296528 AATGAGAGATTTTCTGTAGAAGCCCAAAGTAATAAGGTAGGATTGTTACATAGGATT
i dasNov3.JH570393             I 2251 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=3313534.000000
s hg38.chr14_GL000009v2_random     40365 348 +    201709 ATTAGCCACTTTGATGTCTACCTTGGGAGTAAAACATA-----------TAATAAGGGGCAGCGTTAAACCATCTCAATCACTAGCCTC-CAACTTCTCGAGAAGGTTCTTATTTCATGAATTTCTACACAAAAGACTACCTGGATTAAGACATTTGGTGGACACCATTTTGAGATGAAG-AATCTTGAGTGAGAAGAAGGGAGTTCTCTACTT-ACTGAAGCTTCCCAA-TG--ACATAGTTAAGTGTCCC-CC-AA-AAGAAACTTTAGAACAAGACTTTCATCATGCCATATCTCTATGGAAAAGGAATTTCTTTAAAA---GAAAACAA---AGGCAAACAATTGATAATATGATTCTCATGGGAAAGTT
s panTro5.chr9                  41716303 347 + 116767853 ATTAGCCACTTTGGTGTCTACCTTGGGAGTAAAACATA-----------TAATAAGGGGCAGCTTTAAACCATCTCAATCAATAACCTC-CAACTTCTTGAGAAGGTTCTTATTTCATGAATTTCTAAACAAGAGACTACCTAGATTAAGACATTTGGTGGACACCATTTTGAGATGAAG-AATCTTGAGTGGGAAGAAGGGAGATCTCTACTT-ACTGAAGCTTCCCAA-TG--ACATAGTTAAGTGTCCC-CC-AA-AAGAAACTTTAGAACAAGAATTTCATCGTGCCATATCTCTAT-GAAAAGGAATTTCTCTAAAA---GAAAACAA---AGGCAAACAAGTGATAATCTGATTCTCATGGGAAAGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065110 348 - 114479721 ATTAGCCACTTTGGTGTCTACCTTGGGAGTAAAACATA-----------TAATAAGGGGCAGCTTTAAACCATCTCAATCAATAACCTC-CAACTTCTCGAGAAGGTTCCTATTTCATGAATTTCTAAACAAGAGACAACCTGGATTAAGACATTTGGTGGACACCATTTTGAGATGAAG-AATCTTGAGTGGGAAGAAGGGAGATCTCTACTT-ACTGAAGCTTCCCAA-TG--ACATAGTTAAATGTCCC-CC-AA-AAGAAACTTTAGAACAAGCCTTTCATCATGCCATATCTCTATGGAAAAGGAATTTCTTTAAAA---GAAAACAA---AGGCAAACAATTGATAATCTGATTCACATGGGAAAGTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2553 348 +     53730 ATTAGCCACTTTGATGTCTACCTTGGGAGTAAAACATA-----------TAATAAGCGGCAGCTTTAAACCGTCTCAATCCATAGCCTC-TAACTTCTCGAGAAGGTTCTTATTTCATGAATTTCTAAGCAAGGGACTACCTGGATTAAGACATTTGGTAGACACCATTTTGAGATGAAG-AATCTTGAATGGGAAGAAGGGAGATCTCTACTT-ACTGAAGCTTCCCAA-TG--ACATAGTTAAGTGTCCC-CC-AA-AAGGAACTTTAGAACAAGATGTTCATCGTGCCATATCTCTATGGAAAAGGAAATTCTTTAAAA---GAAAACAA---AGGCAAACAATTGATAATCTGATTCTCATGGGAAAGTT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834014 360 + 122973662 ATTAGCTACTTTTATGTCTGCCTTGGGAGTAAAACATATAATAAACATGTAATAAGGAACAGCATTAAACCATCTCAATCAATAGCCTC-CGACTTCTCGAGAAGGTTCTTATTTCATGAATTTCTAAGCAAGAGACTACCTGGATTAAGACATTTGGTGGACACCATTTTGAGATAAAG-AATCTTGATTGGGAAGAAGGGAGATCTCTACTTGACTGGAGCTTCCCAG-TG--ATATAGTTGAGTGTCCC-CT-GA-AAGAAATTGTAGAACAAGATGTTCATCATGCCATATCTCTATGGAAAAGGAAACTCTTTAAAA---GAAAACAA---AGGCAAACAATTGATAATCTGATTCTCATGGGGAAGTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   526505 344 - 111343173 ATTAGCCAC-TTGATGTCTGCCTTGGGAGTAAAACAT--------------ATAAGGGACAGCTTTAAACCATCTCAATCAATAGCCTC-TAACTTCTCCTGAAGGTGCTTATTTCATGAGTTCCTAAGCAAGAGACTACCTGGA-TAAGACATTTGGTGGACACCATTTTGAGATGAAG-AATCTCGATTAGGAAGAAGGGAGATCTGTACTTGACTGGAGCTTCCCAA-TG--ATATAGTTGAGTGTCCC-CC-AA-AAGAAACTTTAGAACAAGATGTTCATCATGCCCTATCTCTATGGAAAAGGACATTCTTTAAAA---GAAAGCAA---AGGCAAACAATTGATAATCTGATTCTCATGGGAAGGTT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111110568 348 - 111193037 ATTAGCCAC-TTGATGTCTGCCTTGAGTGTAAAACATG-----------TAATAAGGGGCAGCTTTAAACCATTTCCATCAATAGCCTC-TAACTTCTCAGGAAGGTTCTTATTTCATGAATTTCTAAGCAAGAGACTACCTGGATTAAGACATTTGGTGGATACCATTTTGAGATGAGG-AATCTCAATTGGGAAGCAGGGACACCTCTACTTGACTGGAGCTG-CCAA-TG--ATATAGTTGAGTGTCCC-CCTGA-AAGAAACTTTAGAACAAGACTTTCATCATGCCACATCTCTATGGAAAAGGAAATTCTTTAAAA---GAAAACAA---AGGCAAACAATTGATAATCTGATTCTCATGGGAAAGTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369178 330 +    434444 ATTAGCCACTTTGATGTCTGCCTTGGGAGTAAAACAT--------------ATAAGGGACAATATTAAACCATCTCAATCAATAGCCTC-TAACTTCTTGAGAATGTTCTTATTTCATGAATTTCTAAGCAAGAGACTACCTGGATTAAGACATTTGGTGGACACCATTTTGAGATGAAG-TATCTCGATTAGGAGGAAGGGAGACCTCTAGTTGACTGGAGCTTCCCAA-TG--ATATAGCTGAGTGTCCC-CT--G-AAGAAACTTTAGAACAAGACTTTCATCATGCTATATCTCTATGGCAAAGGAAACTCTTTAAAA---GAAAACAA---AGGCAAACAAGTGATAATCTGCT---------------
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          416620 333 -    438202 ATTAGCCACTTTGATGTCTGCCTTGGGAGTAAAACATA-----------TAATAAGGGACAATATTAAACCATCTCAATCAATAGCCTC-TAACTTCTTGAGAATGTTCTTATTTCATGAATTTCTAAGCAAGAGACTACCTGGATTAAGACATTTGGTGGACACCATTTTGAGATGAAG-TATCTCGATTAGGAGGAAGGGAGACCTCTAGTTGACTGGAGCTTCCCAA-TG--ATATAGCTGAGTGTCCC-CC--G-AAGAAACTTTAGAACAAGACTTTCATCATGCTATATCTCTATGGCAAAGGAAACTCTTTAAAA---GAAAACAA---AGGCAAACAAGTGATAATCTGAT---------------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466126 336 +  90373283 ATTAGCCACTTTGATGTCTGCCTTGGGAGTAAAACATA-----------TAATAAGGGACAATATTAAACCATCTCAATCAATAGCCTCTTAACTTCTTGAGAATGTTCTTTTTTCATGAATTTCTAAGCAAGAGACTACCTGGATTAAGACATTTGGTGGATACCATTTTGAGATGAGG-AATCTCAATTGGGAAGCAGGAAGACCTCTACTTGACTGGAGCTTCCCAACTG--ATAGAGTTGAGTGTCCC-CC--GAAAGAAACTTTAGAACAAGACTTTCATCATGCCATATCTCTATGGCAAAGGAAACTCTTTAAAA---GAAAACAA---AGGCAAACAAGTGATAATCTGAT---------------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1516760 333 -   1547936 ATTAGCCACTTTGATGTCTGCCTTGGGAGTAAAACATA-----------TAATAAGGGACAATATTAAACCATCTCAATCAATAGCCTC-TAACTTCTTGAGAATGTTCTTATTTCATGAATTTCTAAGCAAGAGACTACCCGGATTAAGACATTTGGTGGACACCATTTTGAGATGAAG-TATCTCGATTAGGAGGAAGGGAGACCTCTAGTTGACTGGAGCTTCCCAA-TG--ATATAGCTGAGTGTCCC-CC--G-AAGAAACTTTAGAACAAGACTTTCATCATGCTATATCTCTATGGCAAAGGAAACTCTTTAAAA---GAAAACAA---AGGCAAACAAGTGATAATCTGAT---------------
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           31993 348 +    168452 ATTAGCCAC-TTGATGTCTGCCTTGAGTGTAAACCATG-----------TAATAAGGGGCAGCTTTAAACCATCTCAATCAATAGCCTC-TAACTTCTCAAGAAGGTTCTTATTTCATGAATTTCTAAGCAAGACACTACCAGGATTAAGACATTTGGTGGATACCATTTTGAGATGACG-AATCTCAATTGGGAAGTAGGGAGACCTCTACTTGACTGGAGCTG-CCAA-TG--ATATAGTTGAGTGTCCC-CCCGA-AAGAAACTTTAGAACAAGACTTTCATCATGCCATAACTCTAAGGAAAAGGAAATTCTTTAAAA---GAAAACAA---AGGCAAACAATTGATAATCTGATTCTCATGTGAAAGTT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130391794 344 - 210400635 ATTAACCACTTTGATGTC-TGCTTGGGAGTGAAACATT-----------TAATAA-GGACAGCTTTAAACCATCTCAATCAATAGCCTC-TAACTATTCCAGAAGGTTCTTATTTCATGAATTCCTAAGCAAGAGACTACCTGGATTAAGATACTTGGTGGACACCATTTTGAGATGAAG-AATCTCAATTGGGAAGAAGGGAGATCTTTAC-TGACTATA---TCCCAA-TG--ATATAGTCGAGTGTCCCTCT-GA-AAGAAACTTTAGAACAAGACTTTCATCATGCCATATCTCTATGGAAAAGGAAATTCTTCAACA---GAAAATGA---AGGCAAACAATTGACAATCTTATTTTCATGGGAAAGTT
i calJac3.chr1                 C 0 I 1
s saiBol1.JH378105              64660349 355 -  72162052 ATTAGCCACTTTGATGTC-ACTTTGGGTAGAAAAAATT-----------TAATAAGGGGCAGTTTTCAACCATCTCAATTAATAGCCTC-TAACTTCTCCAGAAAGTTCTTATTTCATAAATTCCTAAGCCAGAGACTACTTGGATTAAGATATTTAGTGGACACAATTTTGAAATGAAG-AATCACAGTTGGGCTGAAGGGACATCTCTACTTGACTGGAGCTTCCCAA-TGATATATAGTGGAGTGTTCC-CT-GA-AAGAAACTTTAGAACAAGATTTTCATCATGCCATATCTCTATGGAAAAGGAAATTCTTAAAAA-AGAAAAACAAAACAGGCAAACAATGAATAATTTGATTCTTATGGGAAAGTT
i saiBol1.JH378105             C 0 I 1
s cebCap1.NW_016107851v1         1072886 352 +   1314817 ATTAGCCACTTTGATGTCTACTTTGGGTAGAAAAAATT-----------TAATAAGGGGCAGTTTTCAACCATCTCCATTAATAGCCTC-TAACTTCTCCAGAAAGTTCTTATTTCATAAATTCCTAAGCCAGAGACTACTTGGATTAAGATATTTAGTGGACACAATTTTGCAATGAAG-AATCTCAATTGGGCTGAAGGGAGACCTTTACTTGACTGGAGCTTCCCAA-TGATATATAGTGGAGTGTCCC-CT-GA-AAGAAACTTTAGAACAAGATTTTCATCATGCCATATCTCTATGGAAAAGGAAATTCTTAAAAA----AAAACAA-ACAGGCAAACAATGAATAATTTTATTCTTATGGGAAAGTT
i cebCap1.NW_016107851v1       C 0 I 66
s aotNan1.NW_018488791v1         6430644 357 -   6597006 ATTAGCCACTTTGATGTCTACTTTGGGTAGAAAAAATT-----------TAATAAGGGGCAGTTTTCGATCATCTCAATTAATAGCCTC-TAACTTCTCCAGAAAGTTCTTATTTCATAAATTCCTAAGCCAGAGACTACTTGGATTAAGATATTTAGTGGACACAATTTTGAAATGAAG-AATCTCAATTGGGCTGAAGGGAGATGTCTACTTGACTGGAGCTTCCCAA-TGATATATGGTGGAGCTTCCC-CT-GA-AAGAAACTTTAGAACAAGATTTTCATCATGCCATATCTCTATGGAAAAGGAAATTCTTaaaaaaaaaaaaaaaaaaCAGGCAAACAATGAATAATTTGATTCTTATGGGAAAGTT
i aotNan1.NW_018488791v1       C 0 I 67
s canFam3.chr2                  79140439 342 -  85426708 aTTAGCCACTTTAAGCTTACCCTTTAAAACAGAAACTT-----------AAAT-------AGCTTTCCACCAACTTCATTCATAGCC-C-TAATTTCTGTAGAAGGTTCTTACCTCATAAATCCCCAGGACAGAGACTGCCTGTGTTAAGATATTTGATGGACACAATTTTGAGGTGAAGAAATCTGGATTGAGAAGAAGAGATAGCTCTAGCCGACTTAAGCTTCTGAA-CA--ATATAGTCAAGTGTGTA-TC-TG-AAAAGAATTTAGAAGAAAACTTCCTTAAGTCCAAATCTCTATGGAATAGGAAAGTATTCAAAA---GGAAACAA---AGACAAACCATTCATAATCTGACCCTTGGGAAGAACTT
i canFam3.chr2                 I 442 I 1
s dasNov3.JH570393               1779674 346 -   2296528 ATTAGCCACTTTGAGGTCTACCCTGTTGAATCAAAATT-----------TATTAAGAGTCAGATTTCAACCAACTCAATTAATagcccc-taacttctccagagggtttccttctcaagagtgcctaagccagacactacctgggttaagaaatttgatcagcataatttcaaggtCAAG-AATCTGGATTGAAAAGAAGAGATAGCTCCAGCAGACTCAAGGTCCTGAC-TG---TACAGTTGAGTGTGCA-TTTTA-AAGGAACTTCAGAACAAGACTTCCATAAGGTCAGG--TCTGTGGAATAGGAAATTATTCAAA----GAAAACAG---AGGCAAACAACTGATAATCTAACCCTTGTGGAAAAGTT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=60263.000000
s hg38.chr14_GL000009v2_random     40713 18 +    201709 -TTCATCATAAAAGAAAAA
s panTro5.chr9                  41716650 18 + 116767853 -TTCATCATAAAAGAAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065458 18 - 114479721 -TTCATTATAAAAGAAAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2901 18 +     53730 -TTCATTATCAAAGAAAAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834374 18 + 122973662 -TTCATTATAAAAGAAAAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   526849 18 - 111343173 -TTCATTATAAAAGAAAAA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111110916 18 - 111193037 -TTCGTTATAAAAGAAAAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369508  7 +    434444 ------------GGAAAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          416953  7 -    438202 ------------GGAAAAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466462  7 +  90373283 ------------GGAAGAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517093  7 -   1547936 ------------GGAAAAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32341 18 +    168452 -TTCATTATAAAAGAAAAC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392139 17 - 210400635 -TA-ATTACTAAAGAAAAC
i calJac3.chr1                 I 1 C 0
s saiBol1.JH378105              64660705 18 -  72162052 -TGCATTATAAAGGAAAAA
i saiBol1.JH378105             I 1 C 0
s canFam3.chr2                  79140782 18 -  85426708 -TGCAATATAACAAAAAGG
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1780020 19 -   2296528 TTGCATTATAAAAGAAAAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6431001 67 -   6597006 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e cebCap1.NW_016107851v1         1073238 66 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=117528.000000
s hg38.chr14_GL000009v2_random     40731 33 +    201709 GAGggctgggtgccgtggctcacgtctgtaatc
s panTro5.chr9                  41716668 33 + 116767853 GAGTgctggttgccgtggctcacgtctgtaatc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065476 33 - 114479721 GAGggctggctgccgtggctcatgtctgtaatc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2919 33 +     53730 CAGggctgggttccatggctcacatctgtaatc
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834392 33 + 122973662 AAGggctgggcaccgtgactcacgtctgtaatc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   526867 33 - 111343173 AAGggctgggcaccatggctgacgcctgtaatc
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111110934 33 - 111193037 AAGgactgggtgccatggttcatgtctgtaatc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369515 20 +    434444 AAGGGCTGGGTG-------------ctgtaatc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          416960 20 -    438202 AAGGGCTGGGTG-------------ctgtaatc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466469 20 +  90373283 AAGGGCTGGGTG-------------ctgtaatc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517100 20 -   1547936 AAGGGCTGGGTG-------------ctgtaatc
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32359 33 +    168452 AAGGTctgggtgccgtggttcatgtctgtaatc
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392156 33 - 210400635 AAGAgccgggtgcagtggctcacgtctgtaatc
i calJac3.chr1                 C 0 C 0
s canFam3.chr2                  79140800 19 -  85426708 CAAGACAAAGTACAATGGT--------------
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1780039 33 -   2296528 GAAGACAAACTATACTGGTCAACATCTGCTGTC
i dasNov3.JH570393             C 0 I 1118
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6431001 67 -   6597006 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e cebCap1.NW_016107851v1         1073238 66 +   1314817 I
e saiBol1.JH378105              64660723  0 -  72162052 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=142710.000000
s hg38.chr14_GL000009v2_random     40764 25 +    201709 ccaacactttgggaggctgaggtgc-
s panTro5.chr9                  41716701 25 + 116767853 ccaacagtttgggaggctgaggtgg-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065509 25 - 114479721 ccaacactttgggaggctgaggtgg-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2952 24 +     53730 ccaacacttt-ggaggctgagaggg-
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834425 25 + 122973662 ccaacattttagtaggctgaggtgg-
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   526900 25 - 111343173 ccaacactttgggaggctgaggtgg-
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111110967 25 - 111193037 ccaacactttgggaggctaaggtgg-
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369535 25 +    434444 ccaatatttggggaagctgaggtgg-
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          416980 25 -    438202 ccaatattttgggaagctgaggtgg-
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466489 25 +  90373283 ccaatattttgggaggctgaagtgg-
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517120 25 -   1547936 ccaatattttgggaagctgaggtgg-
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32392 25 +    168452 ccaacactttgggaggctgaggtgg-
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392189 25 - 210400635 ccaacactttgaggggctgaggcgg-
i calJac3.chr1                 C 0 C 0
s canFam3.chr2                  79140819 23 -  85426708 -CAGCATCCT--GAGGGTAAGGGTGC
i canFam3.chr2                 C 0 I 222
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6431001 67 -   6597006 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1780072 1118 -   2296528 I
e cebCap1.NW_016107851v1         1073238 66 +   1314817 I
e saiBol1.JH378105              64660723  0 -  72162052 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1430328.000000
s hg38.chr14_GL000009v2_random     40789 222 +    201709 gtggattagctgaggtcagcagttcaaaaacagcctggccaacatggtgaaaccctgtctctact-gaaaatacaaaaattagccaggtctggtggtgtgcacctgtagtcccagctacttgggatgctgaggcaggagaatcacttgaacccaggaggtggaagttgcagtaagccgagatggtgccac-tgcactccagcctggatgacacagtgtgactcc
s panTro5.chr9                  41716726 222 + 116767853 gtggattacctgaggtcagaagttcaaaaacagcctggccaacatggtgaaaccctgtctctact-gaaaatacaaaaattagccagatgtggtggtgtgcacctgtagtcccagctacttgggaggccgaggcaggagaatcacttgaacccaggaggtgggagttgcagtaagccgagatggtgccac-tgcactccaggctagatgacacagtgtgactcc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065534 222 - 114479721 gtggattacctgaggtcagcatttcaaaaacagcctggccaacatggtgaaactctgtctctact-gaaaacacaaaaattagccaggtgtggtggtgtgcacctgtagtcccagttacttgggaggccgaggcaggataatcacttgaacccaggaggtggaaattacagtaagctgagatggtgtcac-tgcactccaacctgcatgacacagtgtgactcc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            2976 222 +     53730 gtggattacctgaggtcaggagttcaaaaacagcctggccaacacggtgaaaccctgtctctact-gaaaatacaaaaattagccaggcgtggtggtgtgcacctgtagtcccagctacttgtgaggcagaggcaggagaatcacttgaacccaggaggtagaagttgcagtaagctgagatggcaccac-tgcactccagcctggatgacacagtgtgactcc
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834450 222 + 122973662 gtggattacctgaggtcaggagttcaaaaacagcctggccaacatggtgaaaccctgtctctact-gaaaatacaaaaattagccaggcatggtggtgtgcacctgtagttctagctacttgggaggccgaggcaggagaatcacttgaacccaggaggtggaagttgcagtgagccaagatggcgccac-tgcactccagcctgaatgacacagtgtgactcc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   526925 223 - 111343173 gtgggttacctgaggtcagaagtacaagaacagcctggccaacatggtgaaaccctgtctctactaaaaaatacaaaaattagctgggcgtggtggtgtgcaactgtagtcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggtggaagttgcagtgagcagaggtggcaccac-tgccccccagcctggatgacagagtgtgactcc
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111110992 222 - 111193037 gtgggttatctgaggtcaagagttcaaaaacagcctggccaacatggtgaaaccctgtctctact-gaaaatacaaaaatcagccaggtgtggtggtgtgcacctgtagtcccagctgcttgggaggctgaggcaggagaatcacttggactcaggaggtggaagttgcagaaagccaagatggcaccac-tgcactccagcctggatgacacagtgtgacttc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369560 222 +    434444 gtggattacctgaggtcagaagttcaaaaacagcctggccaacatggtgaaaccctgtctctact-gaaaatataaaaattagccaggcttggtggtgggcacctgtagtcccagctacttgggagaccgaggcgggagaatcacttgaaccgaggaggtggaagttgcagtgagctgagatggcaccac-tgcactccagcctggatgacacagtgtgactcc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417005 222 -    438202 gtggattacctgaggtcagaagttcaaaaacagcctggccaacatggtgaaaccctgtctctact-gaaaatataaaaattagccaggcttggtggtgggcacctgtagtcccagctacttgggagaccgaggcgggagaatcacttgaaccgaggaggtggaagttgcagtgagctgagatggcaccac-tgcactccagcctggatgacacagtgtgactcc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466514 222 +  90373283 gtggattacctgaggtcagaagttcaaaaacagcctggccaacatggtgaaaccctgtctctact-gaaaacataaaaattagccaggcttggtggtgggcacctgtagtcccagctacttgggagaccgaggcaggagaatcacttgaacccaggaggtggaagttgcagtgagctgagatggcaccac-tgcactccagcctggatgacacagtgtgactcc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517145 222 -   1547936 gtggattacctgaggtcagaagttcaaaaacagcctggccaacatggtgaaaccctgtctctact-gaaaatataaaaattagccaggcttggtggtgggcacctgtagtcccagctacttgggagaccgaggcaggagaatcacttgaaccgaggaggtggaagttgcagtgagctgagatggcaccac-tgcactccagcctggatgacacagtgtgactcc
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32417 222 +    168452 gtgggttacctgaggtcaagagttcaaaaacagcttggccaacatggtgaaaccctgtctctacc-gaaaatacaaaaatcagccaggtgtggtggtgtgcgcctgtagtcccagctacttgggaggctgaggcagaagaatcacttggactcaggaggtggaagttgcagaaagccaagatggcaccac-tgcactccagcctggatgacacagtgtgacttc
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392214 223 - 210400635 gtggatcacctaagttcaggagttcacaaacagcctagccaacatggtgaaaccctgtctctaat-aaaaatacaaaaattagctgggcatggtaaggtgcacctgtagccccagctatttgggaggctgaggcagcagaatcacttgaacccaagaggtgcaagttgcagtgagctgagatggcaccacttacactttagcctagatgacagagtgtgattcc
i calJac3.chr1                 C 0 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6431001  67 -   6597006 I
e canFam3.chr2                  79140842 222 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1780072 1118 -   2296528 I
e cebCap1.NW_016107851v1         1073238  66 +   1314817 I
e saiBol1.JH378105              64660723   0 -  72162052 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=-25210.000000
s hg38.chr14_GL000009v2_random     41011 26 +    201709 atct---caaaaaaaa---------------g---------------a----aaaaagaaaaa
s panTro5.chr9                  41716948 27 + 116767853 atct---caaaaaaaa---------------g--------------aa----aaaaagaaaaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065756 31 - 114479721 gtct---caaaaaaaa---------------a--------------aaaattaaaatgtaaaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3198 16 +     53730 atct---caaagaaga---------------a--------------aa---------------
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834672 20 + 122973662 atct---caaaaaaaa---------------a--------------ga-----------aaaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527148 26 - 111343173 atctcaaaaaaaaaga---------------aaaagaaaaa----------------------
i rheMac8.chr15                C 0 I 180
s macFas5.chr13                111111214 17 - 111193037 atatcaacaaaaaatg---------------a-------------------------------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369782 14 +    434444 atct---caaaaaagg---------------g-------------------------------
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417227 14 -    438202 atct---caaaaaagg---------------g-------------------------------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466736 15 +  90373283 atct---caaaaaagg---------------g---------a---------------------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517367 14 -   1547936 atct---caaaaaagg---------------g-------------------------------
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32639 21 +    168452 atatcaacaaaaaatg---------------a----------aaaa-----------------
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392437 21 - 210400635 ttaa---aaaaaaaaa---------------aaggaaaa------------------------
i calJac3.chr1                 C 0 C 0
s canFam3.chr2                  79141064 29 -  85426708 atct---taaaaaaaaTACACTCAAAGTAATA-------------------------------
i canFam3.chr2                 I 222 C 0
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6431001 67 -   6597006 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1780072 1118 -   2296528 I
e cebCap1.NW_016107851v1         1073238 66 +   1314817 I
e saiBol1.JH378105              64660723  0 -  72162052 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=177096.000000
s hg38.chr14_GL000009v2_random     41037 35 +    201709 caaaaaaGGGACAAA----GTATACTGGTCCAAAAAAGA
s panTro5.chr9                  41716975 35 + 116767853 caaaaaaGGGACAAA----GTATACTGGTCCAAAAAAGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065787 35 - 114479721 caaaaaaGGGACAAA----GTATACTGGTCCaaaaaaga
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3214 32 +     53730 ---aaaaGGGACAAA----GTATATTGGTCCAAAAAAGA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834692 35 + 122973662 gaaaaaaaGGACAAA----GTATACTGGTCCaaaaaaga
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111111231 38 - 111193037 -aaaacaaagaaaaaCAGTGTATACTGGTCCaaaaaaga
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369796 34 +    434444 -aaaaaaGGGACAAA----GTATACTGGTCCAAAAAAGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417241 34 -    438202 -aaaaaaGGGACAAA----GTATACTGGTCCaaaaaaga
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466751 34 +  90373283 -aaaaaaGGGACAAA----GTATACTGGTCCaaaaaaga
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517381 34 -   1547936 -aaaaaaGGGACAAA----GTATACTGGTCCaaaaaaga
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32660 34 +    168452 -caaagaaaaaCAAT----GTATACTGGTCCaaaaaaga
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392458 31 - 210400635 ----aaaaGGACAAA----GTATACTGGTTTAAAAAAGA
i calJac3.chr1                 C 0 C 0
s canFam3.chr2                  79141093 35 -  85426708 TCAAAAAGGGTCAAC----ATAAAATGTACAAGATTAGA
i canFam3.chr2                 C 0 I 164
e rheMac8.chr15                   527174 180 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6431001 67 -   6597006 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1780072 1118 -   2296528 I
e cebCap1.NW_016107851v1         1073238 66 +   1314817 I
e saiBol1.JH378105              64660723  0 -  72162052 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=80183.000000
s hg38.chr14_GL000009v2_random     41072 17 +    201709 AGAAAGCAAGAAAAAAA
s panTro5.chr9                  41717010 17 + 116767853 AGAAAGCAAGAAAAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065822 17 - 114479721 agaaagaaagaaagaaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3246 16 +     53730 AGAAAGAATGAAA-AAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834727 17 + 122973662 agaaaaaaagaaaaaaa
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111111269 17 - 111193037 agaaagaaagaaaaaaa
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369830 17 +    434444 AGGAAGAAAGAAAAAAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417275 17 -    438202 agaaagaaagaaaaaag
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466785 17 +  90373283 agaaagaaagaaaaaag
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517415 17 -   1547936 agaaagaaagaaaaaag
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32694 17 +    168452 agaaagaaagaaaaaaa
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392489 17 - 210400635 AGAAAGCAAGCAAAAAA
i calJac3.chr1                 C 0 C 0
e rheMac8.chr15                   527174 180 - 111343173 I
e papAnu3.chrUn_NW_003942831v1       797 11290 +     21175 I
e aotNan1.NW_018488791v1         6431001 67 -   6597006 I
e canFam3.chr2                  79141128 164 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1780072 1118 -   2296528 I
e cebCap1.NW_016107851v1         1073238 66 +   1314817 I
e saiBol1.JH378105              64660723  0 -  72162052 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=9100.000000
s hg38.chr14_GL000009v2_random     41089 1 +    201709 G
s panTro5.chr9                  41717027 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065839 1 - 114479721 g
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3262 1 +     53730 G
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834744 1 + 122973662 G
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111111286 1 - 111193037 g
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369847 1 +    434444 G
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417292 1 -    438202 g
i cerAty1.NW_012002921v1       C 0 C 0
s papAnu3.chrUn_NW_003903855v1    121651 1 -    180295 g
i papAnu3.chrUn_NW_003903855v1 n 11290 I 8794
s chlSab2.chr2                  66466802 1 +  90373283 g
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517432 1 -   1547936 g
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32711 1 +    168452 g
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392506 1 - 210400635 G
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64660723 1 -  72162052 G
i saiBol1.JH378105             C 0 C 0
e rheMac8.chr15                   527174 180 - 111343173 I
e aotNan1.NW_018488791v1         6431001 67 -   6597006 I
e canFam3.chr2                  79141128 164 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1780072 1118 -   2296528 I
e cebCap1.NW_016107851v1         1073238 66 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=36894.000000
s hg38.chr14_GL000009v2_random     41090 5 +    201709 GACAA
s panTro5.chr9                  41717028 5 + 116767853 GACAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065840 5 - 114479721 GACAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3263 5 +     53730 GACAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834745 5 + 122973662 GACAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111111287 5 - 111193037 GACAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369848 5 +    434444 GACAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417293 5 -    438202 gacaa
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466803 5 +  90373283 gacaa
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517433 5 -   1547936 gacaa
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32712 5 +    168452 GACAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392507 5 - 210400635 GACAA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64660724 5 -  72162052 GACAA
i saiBol1.JH378105             C 0 C 0
e rheMac8.chr15                   527174 180 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431001 67 -   6597006 I
e canFam3.chr2                  79141128 164 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1780072 1118 -   2296528 I
e cebCap1.NW_016107851v1         1073238 66 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=237768.000000
s hg38.chr14_GL000009v2_random     41095 37 +    201709 AGTATACTGGTTAGTATCATAACAGTGAGATAGCCCC
s panTro5.chr9                  41717033 37 + 116767853 AGTATATTGGTTACTATCATAACAGTGAGATAGTCCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065845 37 - 114479721 AGTATACTGGTTAGTATCATAACAGTGAGATAGTCCC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3268 37 +     53730 AGTATACTGGTTAGTATCGTAACAGTGAGATAGTCCC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834750 37 + 122973662 GGTATACTGGTCAATATCGTAATGGTGAGACTGTCCC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527354 37 - 111343173 AGTATACTGGTCAATATCCTAAGGGTGAGACAGTTCC
i rheMac8.chr15                I 180 C 0
s macFas5.chr13                111111292 37 - 111193037 AGTATACTGGTCAGTATCGTCACAGTGAGATAGTCCC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369853 37 +    434444 AGTATACTGGTCAGTATCATAATGGTGAGACTGTCCC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417298 37 -    438202 agTATACTGGTCAGTATCATAATGGTGAGACTGTCCC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466808 37 +  90373283 agTATACTGGTCAGTATCATAATGGTGAGACTGTCCC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517438 37 -   1547936 agTATACTGGTCAGTATCATAATGGTGAGACTGTCCC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32717 37 +    168452 AGTATACTGGTCAGTATCCTAACAGTGAAATAGTCCC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392512 37 - 210400635 GGTATACTGGTTAGTATCCTAAGGTTGAGATGGTCCC
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64660729 37 -  72162052 TATATGCTGGTTAATATCATAAGGGTGAGGCTGTCCT
i saiBol1.JH378105             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431001 67 -   6597006 I
e canFam3.chr2                  79141128 164 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e dasNov3.JH570393               1780072 1118 -   2296528 I
e cebCap1.NW_016107851v1         1073238 66 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=32019.000000
s hg38.chr14_GL000009v2_random     41132 6 +    201709 CCTTTG
s panTro5.chr9                  41717070 6 + 116767853 TCTTTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065882 6 - 114479721 CCTTTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3305 6 +     53730 CCTTTG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834787 6 + 122973662 CCTTTG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527391 6 - 111343173 CCTTCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111111329 6 - 111193037 TCTTTG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369890 6 +    434444 CCTTTG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417335 6 -    438202 CCTTTG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466845 6 +  90373283 ACTTTG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517475 6 -   1547936 CCTTTG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32754 6 +    168452 TCTTTG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392549 6 - 210400635 ACTTCG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64660766 5 -  72162052 TC-TCA
i saiBol1.JH378105             C 0 C 0
s dasNov3.JH570393               1781190 6 -   2296528 CCTCCG
i dasNov3.JH570393             I 1118 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431001 67 -   6597006 I
e canFam3.chr2                  79141128 164 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e cebCap1.NW_016107851v1         1073238 66 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=281797.000000
s hg38.chr14_GL000009v2_random     41138 30 +    201709 AGATTAGAAA--ATAACAGTATACTCAAAGTA
s panTro5.chr9                  41717076 30 + 116767853 AGATTAGAAA--ATAACAGTATACTCAAAGTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065888 21 - 114479721 AGATTAGAAA--AT---------CACAAAGTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3311 29 +     53730 AGATTAGAAA--ATAACAGTATACTC-AAGTA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834793 30 + 122973662 AGATTAGAAA--ATAACAGTGTACTGAAAGTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527397 30 - 111343173 AGATTAGAAA--ATAACACTATACTCAAAGTA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111111335 30 - 111193037 AGATTAGAAA--ATAACAGTATTCTCAAAGTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369896 30 +    434444 AGATTAGAAA--ATAACAGTATACTCAAAGTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417341 30 -    438202 AGATTAGAAA--ATAACAGTATACTCAAAGTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466851 30 +  90373283 AGATTAGAAA--ATAACAGTATACTCAAAGTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517481 30 -   1547936 AGATTAGAAA--ATAACAGTATACTCAAAGTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32760 30 +    168452 AGATTAGAAA--ATAACAGTATACTCAAAGTA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392555 30 - 210400635 AGATTAGAAA--ATAGCACTGTATTCGAAGTA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64660771 32 -  72162052 AGATTAGAAAATATAACACTACACTCAAAGTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1073304 30 +   1314817 AGATTAGAAA--ATAACACTACACTCAAAGTA
i cebCap1.NW_016107851v1       I 66 C 0
s aotNan1.NW_018488791v1         6431068 30 -   6597006 AGATTAGAAA--ATAACACTACACTCAAAGTA
i aotNan1.NW_018488791v1       I 67 C 0
s dasNov3.JH570393               1781196 27 -   2296528 AGAGTAGAAA--GTAACAACACACTCAAA---
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e canFam3.chr2                  79141128 164 -  85426708 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=38800.000000
s hg38.chr14_GL000009v2_random     41168 4 +    201709 ACAT
s panTro5.chr9                  41717106 4 + 116767853 ACAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065909 4 - 114479721 ACAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3340 4 +     53730 ACAT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834823 4 + 122973662 ACAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527427 4 - 111343173 ACAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111111365 4 - 111193037 GCAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369926 4 +    434444 ATAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417371 4 -    438202 ATAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466881 4 +  90373283 ATAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517511 4 -   1547936 ATAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32790 4 +    168452 GCAT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392585 4 - 210400635 ACAT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64660803 4 -  72162052 ACAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1073334 4 +   1314817 ACAT
i cebCap1.NW_016107851v1       C 0 I 3
s aotNan1.NW_018488791v1         6431098 4 -   6597006 ACAT
i aotNan1.NW_018488791v1       C 0 I 3
s canFam3.chr2                  79141292 4 -  85426708 acat
i canFam3.chr2                 I 164 C 0
s dasNov3.JH570393               1781223 2 -   2296528 --AG
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=35118.000000
s hg38.chr14_GL000009v2_random     41172 5 +    201709 TAATG
s panTro5.chr9                  41717110 5 + 116767853 TAATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065913 5 - 114479721 TAATG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3344 5 +     53730 CAATA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834827 5 + 122973662 CAATA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527431 5 - 111343173 CAATA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111111369 5 - 111193037 CAATA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369930 5 +    434444 CAATA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417375 5 -    438202 CAATA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466885 5 +  90373283 CAATA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517515 5 -   1547936 CAATA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32794 5 +    168452 CAATA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392589 5 - 210400635 CAATA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64660807 5 -  72162052 CAGTG
i saiBol1.JH378105             C 0 I 585
s canFam3.chr2                  79141296 5 -  85426708 aaatt
i canFam3.chr2                 C 0 I 2
s dasNov3.JH570393               1781225 5 -   2296528 CAGTG
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431102 3 -   6597006 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e cebCap1.NW_016107851v1         1073338 3 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=335317.000000
s hg38.chr14_GL000009v2_random     41177 49 +    201709 AGAACCAAC-------------ATAAAATAGACAACATTCACTATCTACAAAAGTAATCTGC
s panTro5.chr9                  41717115 49 + 116767853 AGAACCAAC-------------ATAAAATAGACAACATTCACTATCTACAAAAGTAATCTGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065918 49 - 114479721 AGAGCCAAC-------------ATAAAATAGACAAGATTCACTATCTACAAAAGTAATCTGC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3349 49 +     53730 AGAACCAAC-------------ATAAAATAGACAAGATTCACTATCTACAAAAGTAATCTGC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834832 49 + 122973662 AGAACCAAC-------------GTAAAATAGACAAGATTCACTATCTACAAAAGTAATCTGC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527436 49 - 111343173 AGAATCAAC-------------ATAAAATAGACAAGATTCACTATCTACTAAACTAATCTGC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111111374 49 - 111193037 AGAACCAAT-------------GTAAAATAGACAAGATTCACTATCTACAAAAGTCATCTGC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369935 62 +    434444 AGAACCAACAGAATAGACAAGAATAGAATATACAAGATTCACTATCTGCAAAAGTAATCTGC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417380 62 -    438202 AGAACCAACAGAAGAGACAAGAATAGAATATACAAGATTCGCTATCTGCAAAAGTAATCTGC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466890 62 +  90373283 AGAACCAACAGAATAGACAAGAATAGAATATACAAGATCCACTATCTGCAAAAGTAATCTGC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517520 62 -   1547936 AGAACCAACAGAATAGACAAGAATAGAATATACAAGATTCGCTATCTGCAAAAGTAATCTGC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32799 49 +    168452 AGAACCAAT-------------GTAAAATAGACAAGATTCACTATCTACAAAAGTAATCTGC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392594 49 - 210400635 AGAATTAAC-------------ATAAAATAGACAAGATTCATTATCTATAAAAGTAATCTGC
i calJac3.chr1                 C 0 C 0
s canFam3.chr2                  79141303 45 -  85426708 aaa---aaT-------------ATAAAA-ATAACAGATTAGCTAACTACAAAGGTAATCCAC
i canFam3.chr2                 I 2 C 0
s dasNov3.JH570393               1781230 49 -   2296528 AGAATCAAC-------------ATAGAATATAGGAGACTAACTATTTGCAAAGGTAACCCAC
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431102  3 -   6597006 I
e otoGar3.GL873538              19677435 1477 -  27850971 I
e cebCap1.NW_016107851v1         1073338  3 +   1314817 I
e saiBol1.JH378105              64660812 585 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=85179.000000
s hg38.chr14_GL000009v2_random     41226 12 +    201709 ACCAATTAGCAA
s panTro5.chr9                  41717164 12 + 116767853 ACCAATTAGCAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065967 12 - 114479721 ACCAAGTAGCAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3398 12 +     53730 ACCAAGTAGCAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834881 12 + 122973662 ACCAAGTAGCAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527485 12 - 111343173 ACCGAGTAGCAA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111111423 12 - 111193037 ACCAAGTAGCAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          369997 12 +    434444 ACAAAGTAGCAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417442 12 -    438202 ACAAAGTAGCAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466952 12 +  90373283 ACAAAGTAGCAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517582 12 -   1547936 ACAAAGTAGCAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32848 12 +    168452 ACCAAGTAGCAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392643 12 - 210400635 ACCAAATAGCAA
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19678912 12 -  27850971 ACCAAGGAATGG
i otoGar3.GL873538             I 1477 C 0
s canFam3.chr2                  79141348 12 -  85426708 ATCAGGTAACAG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1781279 12 -   2296528 ACCCTGAATTAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431102  3 -   6597006 I
e cebCap1.NW_016107851v1         1073338  3 +   1314817 I
e saiBol1.JH378105              64660812 585 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=186369.000000
s hg38.chr14_GL000009v2_random     41238 19 +    201709 TGTATGAGCATGTGGTTGA
s panTro5.chr9                  41717176 19 + 116767853 TGTATGAGCATGTGGTTGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065979 19 - 114479721 TGTATGAGCGTGTGGTTGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3410 19 +     53730 TGTATGAGCATGTGGTGGA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834893 19 + 122973662 TGTCTGAGCGTGTGGTTGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527497 19 - 111343173 TATATGAGTGTGTGGTTGG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111111435 19 - 111193037 CGTATGAGTGTGTGGTTGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          370009 19 +    434444 TGTATGAGTGTGTGGTTGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417454 19 -    438202 TGTATGAGTGTGTGGTTGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466964 19 +  90373283 TGTATGAGTGTGTGGCTGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517594 19 -   1547936 TGTATGAGTGTGTGGTTGA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32860 19 +    168452 CGTATGAGTGTGTGGTTGA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392655 19 - 210400635 TGTATGAGCATGTGGTTGA
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1073341 19 +   1314817 TGTATGAGCATGTGGCTGA
i cebCap1.NW_016107851v1       I 3 C 0
s aotNan1.NW_018488791v1         6431105 19 -   6597006 TGTATGAGCATGTGGCTGA
i aotNan1.NW_018488791v1       I 3 I 592
s otoGar3.GL873538              19678924 19 -  27850971 TTGATGAGTGTGTGGTTAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79141360 19 -  85426708 CTTTTGAGTGAGTGGTTGA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1781291 12 -   2296528 ----TGAATGTGTTGA---
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e saiBol1.JH378105              64660812 585 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=107542.000000
s hg38.chr14_GL000009v2_random     41257 11 +    201709 GAA-------TATTTTCT
s panTro5.chr9                  41717195 11 + 116767853 GAA-------TATTGTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96065998 11 - 114479721 GAA-------CATTGTCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3429 11 +     53730 GAA-------TATTGTCT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834912 11 + 122973662 GAA-------TATTGTCT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527516 18 - 111343173 CAACAATATGTGTTGTCT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111111454 10 - 111193037 GAA-------TATGGTC-
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          370028 11 +    434444 GAA-------TATTGTCT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417473 11 -    438202 GAA-------TATTGTCT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466983 11 +  90373283 GAA-------TATTGTCT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517613 11 -   1547936 GAA-------TATTGTCT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32879 11 +    168452 GAA-------TATTGTCT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392674 11 - 210400635 AAA-------TATTATCT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64661397 11 -  72162052 gaa-------tATTTTCT
i saiBol1.JH378105             I 585 C 0
s cebCap1.NW_016107851v1         1073360 11 +   1314817 GAA-------TATTttct
i cebCap1.NW_016107851v1       C 0 I 4610
s aotNan1.NW_018488791v1         6431716 11 -   6597006 gaa-------tATTTTCT
i aotNan1.NW_018488791v1       I 592 C 0
s otoGar3.GL873538              19678943 11 -  27850971 GAC-------TGTTGTCA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79141379 11 -  85426708 AAA-------TAATGTCT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1781303 11 -   2296528 GAA-------TATTGGCT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1132642.000000
s hg38.chr14_GL000009v2_random     41268 124 +    201709 ATAATATGTGTACTAGAACGAAGA---------------GAC--------------CTCAAGA--------------------AAATGGTCAGAGCTGGAAATGTAGATTAGGGAATCT--AG-GTCAAAGTTTTGAGATTTT--AGGAGTCCTGAGAGAATTTAA-AAAGAGAAATAG
s panTro5.chr9                  41717206 124 + 116767853 ATAATATGTATGTTAGAAGGAAGA---------------GAC--------------CTCAAGA--------------------AAATGGTCAGAGTTGGAAATGTAGATTAGGGAATCT--AG-GTCAAAGTTTTGAGATTTT--AGGAGTCCTGAGAGAATTTAA-AAAGAGAAATAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96066009 124 - 114479721 ATAATATGTGTACTAGAAGGAAGA---------------GAC--------------CTCAAGA--------------------AGAAGTTCAGAGCTGGAAATATAGATTAGGGAATCT--AG-GTCAAAGTTTTGAGATTTT--AGGAGTCCTGAGAGAATGTAA-AAAGTGAAATAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3440 124 +     53730 ATAATATGTGTACTAGAAGGAAGA---------------GAC--------------CTCAAGA--------------------AAAAGGTCAGAGCTGGAAATGTAGATTAGGGAATCT--AG-GTCAAAGTTTTGAGATTTT--AGGAGTCCTGAGAGAATTTAA-AAAGTGAAATAG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40834923 124 + 122973662 ATAATATGTGTAGTAGAAGGAAGA---------------GGC--------------Ctcaaga--------------------aaaaggtcagagctggaaatgtagattagggaatct--ag-gtcaaagttttgagatatt--aggagtcctgagaGAATTTAA-AAAGTGGAATAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527534 124 - 111343173 ACAATATGTGTACTAGAAGGAAGA---------------GTC--------------CTCAGTA--------------------AAAAGGTCAGAGCTGGAAATGTATATTAGGGAATCT--GG-GTTAACATTTTGAGATTTT--AGGAGTTCTGAGAGAGTGTAA-AAAGAGGAGTAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111111464 125 - 111193037 AAAATATGTGTACTAGAAGGAAGA---------------GGC--------------Ctcaaga--------------------gaaaggtcagagctggaaatgtagattagggaatct--ag-gtcaaagttttgaggtttttcag-agtcctgagaGAATTTAA-AAAGTGAAATAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          370039 124 +    434444 ATAATATGTGTACTAGAAGGAAGA---------------GGC--------------CTCAAGA--------------------GAAAGGTCAGAGCTGGAAATGTAGATTAGAGAAACT--AG-GTCAAAGTTTTGAGATTTT--AGCAGTCCTGAGAGAATTTAA-AAAGTGGAATAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417484 125 -    438202 ATAATATGTGTACTAGAAGGAAGA---------------GGC--------------CTCAAGAT-------------------AAAAGGTCAGAGCTGGAAATGTAGATGAGAGAATCT--AG-GTCAAAGTTTTGAGATTTT--AGCAGTCCTGAGAGAATTTAA-AAAGTGGAATAG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66466994 125 +  90373283 ATAATATGTGTACTAGAAGGAAGA---------------GGC--------------CTCAAGAT-------------------GAAAGGTCAGAGCTGGAAGTGTAGATTAGAGAATCT--AG-GTCAAAGTTTTGAGATTTT--AGGAGTCCTGAGATAATTTAA-AAAGTGGAATAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517624 144 -   1547936 ATAATATGTGTACTAGAAGGAAGA---------------GGC--------------CTCAAGATAAAAGGTCAGGCCtcaagagaaaggtcagagctggaaatgtagattagggaatcT--AG-GTCAAAGTTTTGAGATTTT--AGCAGTCCTGAGAGAATTTAA-AAAGTGGAATAG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           32890 123 +    168452 ATAATAGGTGTACTAGAAGGAAGA---------------GGC--------------Ctcaaga--------------------gaaaggtcagagctggaaatgtagattagggaatcT--AG-GTCAAAGTTTTGAGATTTT---TCAGTCTCGAGAGAATTTAA-AAAGTGAAATAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392685 125 - 210400635 ATAATAAGTGTACTAGAAGGAATA---------------GGC--------------CTCAAGA--------------------AAAAGGTCGGAGATGAAAATGTAAATTAGGGAATCT--GG-ATCAAAGTTTTGAGATTTT--AGGAGCCCCGAGAGAGTTTAATAGAAAGGGATAG
i calJac3.chr1                 C 0 I 41
s saiBol1.JH378105              64661408 124 -  72162052 ATGAGAAGTGTACTAACAGGAAGA---------------GGC--------------CTCAGTA--------------------AAAGGGACAGAGCTGGAAATGTAGATTCGGGAATCT--GG-GCGGGAGTTTTGAGATTTA--AGGAGCTCTGGGATAATTTTA-AAAGAGCAACAG
i saiBol1.JH378105             C 0 I 2340
s aotNan1.NW_018488791v1         6431727 124 -   6597006 ATGAGAAGTGTACTGAAAGGAAGA---------------GGC--------------CTCAGTA--------------------AAAAGGACAGAGCTGGAAATGTAGATTCGGGAATCT--GG-GCGAGAGTTTTGAGATTTA--AGGAGCTCTGGGATAATTTAA-AAAGAGCAATAG
i aotNan1.NW_018488791v1       C 0 I 3588
s otoGar3.GL873538              19678954 108 -  27850971 ATGAGAAGTGAACC---AGGAGGA---------------GCC--------------CTCAGGG--------------------------------CTGGAAACGTAGAGGAGGGAATCC--GG-GTTGAAG-CCTGAGTTTTA--AGAAGTTCTGAGAGAATTTAA-AAAGAAGAATAG
i otoGar3.GL873538             C 0 I 2854
s canFam3.chr2                  79141390 136 -  85426708 ATGAA----GAACTAGAAGGAAGATTGAAAAGGACAGATGAC--------------CTCAGTA--------------------AATGGGTCAAGGCTGAAAATGTAGATTAGAGATTCT--GATTTTGAAGCCTTGAGATTTG--GAGAACTCTGAGAGCATGTca-aaagaggaatag
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1781314 138 -   2296528 ATGAGAAGTGAACCAGAAGGAAGA---------------GGTAAAAGTACAGATGATTCAGTA--------------------AAGAGGTTAAGGCTGGAAATGTAGCATAGAGAATCTCAGG-ATTAAGTCTTTGAGATTTA--AGGAACTC--AGAGAGTTTTA-AAAAAGGAGTGG
i dasNov3.JH570393             C 0 I 3171
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=6175.000000
s hg38.chr14_GL000009v2_random     41392 1 +    201709 C
s panTro5.chr9                  41717330 1 + 116767853 C
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96066133 1 - 114479721 C
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3564 1 +     53730 C
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40835047 1 + 122973662 C
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527658 1 - 111343173 C
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111111589 1 - 111193037 C
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          370163 1 +    434444 C
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417609 1 -    438202 C
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66467119 1 +  90373283 C
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517768 1 -   1547936 C
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           33013 1 +    168452 C
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392851 1 - 210400635 G
i calJac3.chr1                 I 41 C 0
s canFam3.chr2                  79141526 1 -  85426708 c
i canFam3.chr2                 C 0 I 4305
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e otoGar3.GL873538              19679062 2854 -  27850971 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64661532 2340 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=547966.000000
s hg38.chr14_GL000009v2_random     41393 94 +    201709 CAccaggcatggtggc-cacacctgtaatcccagcactttgggaggccaaggcatgaagatcatgaggtcaggagttaaagaccagtctggccaa
s panTro5.chr9                  41717331 94 + 116767853 CAccaggcgtggtggc-cacacctgtaatcccagcactttgggaggccaaggcaggaagatcatgaggtcaggagttcaagaccagtctggccaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96066134 94 - 114479721 CActgggcatggtggt-cagacctgtaatcccagcactttgggaggctaaggcaggcagatcatgaggtcaggagttcaagaccagtctggccaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3565 94 +     53730 Cgccgggcgtggtggc-cacacccgtaatcccagcactttgggaggccaaggcaggcagatcatgaggtcaggagttcaagaccagtctgaccaa
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40835048 95 + 122973662 Agccgggcatggtggctcccacctgtaatcccagtactttgggaggccaaggcaggcagatcatgaggtcaggagttcaagatcagtctggccaa
i nomLeu3.chr1a                C 0 I 3443
s rheMac8.chr15                   527659 95 - 111343173 Agctgggcgtggtggctcatgcctgtaatcccagcactttgggtggccgaggtgggcggatcatgaggtcaggagttcaaggccagcctggccaa
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111111590 95 - 111193037 ATccgggtgtggtgtctcatgcctttaatcgcagcactttgggaggtcaaggcaggcagatcatgaggtcaggagttcaagaccagtctagccaa
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          370164 95 +    434444 Agctgagcgtggtggctcagtcctgtaatcccagcactttgggaggctaaggcaggcagatcatgaggttaggagttcaagatcagtctggccaa
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417610 95 -    438202 Agctgagtgtggtggctcagtcctgtaatcccagcactttgggaggctaaggcaggcagatcatgaggttaggagttcaagatcagtctggccaa
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66467120 95 +  90373283 Agctgggcgtggtggctcagtcctgtaatcccagcactttgggaggctaaggcaagcagatcatgaggttaggagttcaagatcagtctggccaa
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517769 95 -   1547936 Agctgagcgtggtggctcagtcctgtaatcccagcactttgggaggctaaggcaggcagatcatgaggttaggagttcaagatcagtctggccaa
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           33014 94 +    168452 Agccgggtgtggtgtctcatgcctttaatcccagcacttt-ggaggccaaggcaggcagatcatgaggtcaggagttcaagaccagtctagccaa
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392852 95 - 210400635 ggccgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgaggcaggtggatcacgaggtcagcagatcgggaccatcctggtcaa
i calJac3.chr1                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e otoGar3.GL873538              19679062 2854 -  27850971 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64661532 2340 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=7800.000000
s hg38.chr14_GL000009v2_random     41487 1 +    201709 c
s panTro5.chr9                  41717425 1 + 116767853 c
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96066228 1 - 114479721 c
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            3659 1 +     53730 c
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40838586 1 + 122973662 c
i nomLeu3.chr1a                I 3443 C 0
s rheMac8.chr15                   527754 1 - 111343173 c
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111111685 1 - 111193037 c
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          370259 1 +    434444 c
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          417705 1 -    438202 c
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66467215 1 +  90373283 c
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1517864 1 -   1547936 c
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           33108 1 +    168452 c
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130392947 1 - 210400635 c
i calJac3.chr1                 C 0 I 3013
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e otoGar3.GL873538              19679062 2854 -  27850971 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64661532 2340 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=7098.000000
s hg38.chr14_GL000009v2_random     41488 1 +    201709 a
s panTro5.chr9                  41717426 1 + 116767853 a
i panTro5.chr9                 C 0 I 3612
s panPan2.chr13                 96066229 1 - 114479721 a
i panPan2.chr13                C 0 I 3462
s gorGor5.CYUI01002030v1            3660 1 +     53730 a
i gorGor5.CYUI01002030v1       C 0 I 3474
s nomLeu3.chr1a                 40838587 1 + 122973662 a
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   527755 1 - 111343173 a
i rheMac8.chr15                C 0 I 4773
s macFas5.chr13                111111686 1 - 111193037 a
i macFas5.chr13                C 0 M 18063
s macNem1.NW_012012823v1          370260 1 +    434444 a
i macNem1.NW_012012823v1       C 0 I 3732
s cerAty1.NW_012002921v1          417706 1 -    438202 a
i cerAty1.NW_012002921v1       C 0 I 3771
s chlSab2.chr2                  66467216 1 +  90373283 a
i chlSab2.chr2                 C 0 I 3440
s manLeu1.NW_012105442v1         1517865 1 -   1547936 a
i manLeu1.NW_012105442v1       C 0 I 3728
s colAng1.NW_012121088v1           33109 1 +    168452 a
i colAng1.NW_012121088v1       C 0 I 3419
s calJac3.chr1                 130395961 1 - 210400635 a
i calJac3.chr1                 I 3013 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e otoGar3.GL873538              19679062 2854 -  27850971 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64661532 2340 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=38.000000
s hg38.chr14_GL000009v2_random     41489 1 +    201709 A
s nomLeu3.chr1a                 40838588 1 + 122973662 g
i nomLeu3.chr1a                C 0 C 0
s calJac3.chr1                 130395962 1 - 210400635 g
i calJac3.chr1                 C 0 C 0
e rheMac8.chr15                   527756 4773 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e otoGar3.GL873538              19679062 2854 -  27850971 I
e colAng1.NW_012121088v1           33110 3419 +    168452 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64661532 2340 -  72162052 I
e manLeu1.NW_012105442v1         1517866 3728 -   1547936 I
e chlSab2.chr2                  66467217 3440 +  90373283 I
e cerAty1.NW_012002921v1          417707 3771 -    438202 I
e macNem1.NW_012012823v1          370261 3732 +    434444 I
e macFas5.chr13                111111687 18063 - 111193037 M
e panPan2.chr13                 96066230 3462 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I
e gorGor5.CYUI01002030v1            3661 3474 +     53730 I
e panTro5.chr9                  41717427 3612 + 116767853 I

a score=79675.000000
s hg38.chr14_GL000009v2_random     41490 24 +    201709 gtttcttatataggtaaacgtgtt
s panTro5.chr9                  41721039 24 + 116767853 gtttcttatataggtaaacgtgtt
i panTro5.chr9                 I 3612 C 0
s panPan2.chr13                 96069692 24 - 114479721 gtttcttatataggtaaacgtgtt
i panPan2.chr13                I 3462 C 0
s gorGor5.CYUI01002030v1            7135 24 +     53730 gtttgttatataggtaaacgtgtg
i gorGor5.CYUI01002030v1       I 3474 C 0
s nomLeu3.chr1a                 40838589 24 + 122973662 gtttgttacctaggtaaatgtgtg
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          373993 24 +    434444 gtttgttacataagtaaacgtgtg
i macNem1.NW_012012823v1       I 3732 C 0
s cerAty1.NW_012002921v1          421478 24 -    438202 gtttgttacataagtaaacgtgtg
i cerAty1.NW_012002921v1       I 3771 C 0
s chlSab2.chr2                  66470657 24 +  90373283 gtttgttacataagtaaacgtgtg
i chlSab2.chr2                 I 3440 C 0
s manLeu1.NW_012105442v1         1521594 24 -   1547936 gtttgttacataagtaaccgtgtg
i manLeu1.NW_012105442v1       I 3728 C 0
s calJac3.chr1                 130395963 24 - 210400635 gtttgttacataggtaaatgtgta
i calJac3.chr1                 C 0 C 0
e rheMac8.chr15                   527756 4773 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e otoGar3.GL873538              19679062 2854 -  27850971 I
e colAng1.NW_012121088v1           33110 3419 +    168452 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64661532 2340 -  72162052 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1815468.000000
s hg38.chr14_GL000009v2_random     41514 430 +    201709 ccatgatggtttgctgcacctatcaatccatcacctagatattaagccctgtgggcattagttattgatcttgatgctctccctcctga-ccccaacaggccccagtgtttgttgttcccctccccgagtccatgtgctcttatcgttcagctcccacttataagtgagaagatgcagtgtttggttttttcttcctgcattagtttgctgaagatatcagctttgggttcatccatatccctgca-aagagcatgatctcattcatttttatggct------------------------ccatagtattccatggtgtatatataccacattttctttatcccat-tatcactgataatgtccatctgtgttgattccatgtctttactattgtgaatagtgctgcagtgaacatgcaaatgcatgtatctttataatagaataatttatattcc
s panTro5.chr9                  41721063 426 + 116767853 ccatgatggtttgctgcacctatcaatccatcacctagatattaagccctgcaggcattagttattgatcttgatgctctccctcctga-ccccaacaggccccagtgtttgttgttcccctccccgagtccacgtgttctcatcgttcagctcccacttataagtgagaagatgcagtgtttggttttttcttcctgcattagtttgctgaagagatcagctttgggttcatccatattcctgca---gagcatgatctcattcatttttatggct------------------------ccatagtattccatggtgtatatataccacattttctttatcccatctatcactgat---ggacatctgggttgattccatatctttactattgtgaatagtgctgcaatgaacatacaaatgcatgtatccttataatagaataatttatattcc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96069716 426 - 114479721 ccatgatggtttgctgcacctatcaatccatcacctaggtattaagccctgcaggcattagttattgatcttgatgctctccctcctga-ccccaacaggccccagtgtttgttgttcccctccccgagtccatgtgttctcatcgttcagctcccacttataagtgagaagatgcagtgtttggttttttcttcctgcattagtttgctgaagagatcagctttgggttcatccatattcctgca---gagcatgatctcattcatttttatggct------------------------ccatagtattccatggtgtatatataccacattttctttatcccatctatcactgat---ggacatctgggttgattccatatctttactattgtgaatagtgctgcaatgaacatacaaatgcatgtatccttataatagaataatttatattcc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            7159 428 +     53730 tcatgttggtttgctgcacctatcaatccatcacctagatattaagccctgcaggcattagctattgatcttgatgctctccctcctga-ccctaacaggccccagtgtttg-tgttcccctccccgagtccatgtgttctcattattcagctcccacttataagtgagaagatgcagtgtttgtttttttcttcctgcattagtttgctgaagatatcagctttgagctcatccatatccctgcaaaaaagcatgatctcattcatttttatggct------------------------ccatagtattccatggtgtatatgtaccacattttctttatcccgtctatcactgat---ggacatctgggttgattccatggctttactgttgtgaatagtgctgcaatgaacatacaaatgcatgtatctttataatagaataatttatattcc
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40838613 418 + 122973662 ccatcatggtttgctgcacctgtcgatccatcacctagatattaagcccggcaggaattagctattgatcttgatgctccccctcctga-ccccaacaggccccagtgtttgttgttcccctccccgagtccatgtgttctctttgttcagctcccatttataagtgagaaaatgtagtgtttggttttttgttcctgcgttagtttgctgaggataacagctttgagttcatccatgtccctgca-aagagcatgatctcattcatttttatggc----------------------------------tccatggtgtatatataccacattttctttatcccgtctatcactgat---ggccatctggattgattccatgtctttgccattgtgaatagtgctgcaatgaacatacaaatgcatgtatctttataatagaataacttatattcc
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          374017 418 +    434444 ccatgatggtttgctgcacctgtcaatccatcacctagatattaagccctgcaggcattagctattgatctccatgctctccctcctga-ccccaacaggccccagtgtttgtcgttcccctccccaagtccacgtgttctcgtcgttcagctcccacttataagtgagaaaatgtagcgtttggtttttcgttcctgcgttagtctgccgaggataacagctttgagttcatccacgtccctgca-aagagcatgatctcattcatgtttatgac----------------------------------tccatggtgtatatatatcacattttctttatcccatgtatcactgat---agacatctgggttgattccatgtctttactattgagaatagtgctgcaatgaacatacaaacgcatgtatctttgtaatagaaaaatttatattcc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          421502 418 -    438202 ccatgatggtttgctgcacctgtcaatccatcacctagatattaagccccgcaggcattagctattgatctccatgctctccctcctga-ccccaacaggccccagtgtttgtcgttcccctccccaagtccacgtgttctcgtcgttcagctcccacttataagtgagaaaatgtagcgtttggtttttcgttcctgcattagtctgccgaggataacagctttgagttcatccacgtccctgca-aagagcatgatctcattcatgtttatgac----------------------------------tccatggtgtatatatatcacattttctttatcccatgtatcactgat---agacatctgggttgattccatgtctttactattgagaatagtgctgcaatgaacatacaaacgcatgtatctttgtaatagaaaaatttatattcc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66470681 418 +  90373283 ccatgatggtttgctgcacctgtcaatatatcaccgagatattaagccctgcaggcattagctattgatcttgatgctctccatcctga-ccccaacaggccccagtgtttgtcgttcccctccccaagtccacgtgttctcgtcgttcagctcccacttgtaagtgagaaaatgtagcgtttggtttttcgttcctgcattagtctgctgaggataacagctttgagttcatccacgtccctgca-aagagtatgatctcattcatgtttatgac----------------------------------tccatggtgtatatatatcacattttctttatcccatgtatcactgat---ggacatctgggttgattccatgtctttactattgagaatagtgctgcaatgaacatacaaatgcatgtatctttgtaatagaaaaatttatattcc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1521618 418 -   1547936 ccatgatggtttgctgcacctgtcaatccatcacctagatattaagccctgcaggcattagctattgatcttgatgctctccctcctga-ccccaacaggccccagtgtttgtcgttcccctccccaagtccacgtgttctcgtcgttcagctcccacttacaagtgagaaaatgtagcatttggtttttcgttcctgcattagtctgctgaggataacagctttgagttcatccacgtccctgca-aagagcatgatctcattcatgtttatgac----------------------------------tccatggtgtatatatatcacattttctttatcccatgtatcactgat---agacatctgggttgattccatgtctttactattgagaatagtgctgcaatgaacatacaaacgcatgtatctttgtaatagaaaaatttatattcc
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           36529 429 +    168452 ccatgatggtttgctgcacctatcaatccatcacctagatattaagccccacaggcattagctattgatcttgatgctctcccccctgacccccaacaggccccagtgtttgtcgttcccctccccgagtccatgtgttctcattgtttagctcccacttaaaagtgagaagatgcagtgtttgtttttttgttcctgcattagtttgcagaggataacagcttcaagttcatccatgtccctgca-aagagcatgatctcattcattggtatggcc------------------------ccctagtattccatggtgtatatataccacattttctttatcccgtctatcactgat---ggacatcttggttgattccatgtcttcactgttgtgaacggtgctgtagtgaacatacaaatgcatgtatctttataatagaataatttatattcc
i colAng1.NW_012121088v1       I 3419 C 0
s calJac3.chr1                 130395987 434 - 210400635 ccatgatggttcgttgtacctatcaatccatcacctagatattaagccccacatgcattagctattgatcttggtgctttccctcctga-ccccaacaggccttagtgtttgttattcctctccccgagtccatgtgttctcatcattcagctcccacttataagtgagaacattcagtgtttggttttt-gtttctgtgttagcttgctgaggacaacagcttcaagttcatttatgcccctgca-gagagcatgatctcattcatttttatgcctgattatactagggcatagaatacgccatagtattctatggtgtatatatgccacattttctttatgccatctatcattgat-------------------tccttgtctttactattgtgaatagtgctgcaatgaacatacaaatgcatgtatctttat-acagaatgatttatatttc
i calJac3.chr1                 C 0 C 0
e rheMac8.chr15                   527756 4773 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e otoGar3.GL873538              19679062 2854 -  27850971 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64661532 2340 -  72162052 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=431562.000000
s hg38.chr14_GL000009v2_random     41944 95 +    201709 AACGTATGGTAATTTTAAATCAGTTTTGGTATTAAAAA---TCATGCA-TTTTGGAAAATATTGATAATGGAAAAATCCAAATTCTGCCAAAATATGTT
s panTro5.chr9                  41721489 96 + 116767853 AACGTATGGTAATTTTAAATCAGTTTTTGTATTAAAAA---TCACGTAATTTTGGAAAATATTGATAATGGAAAAACCCAAATTCTGCCAAAATATGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070142 96 - 114479721 AACGTATGGTAATTTTAAATCAGTTTTTGTATTAAAAA---TCACGTAATTTTGGAAAATATTGATAATGGAAAAACCCAAATTCTGCCAAAATATGTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            7587 95 +     53730 AACGTATGGTAATTTTAAATCAGTTTTGGTATTAAAAA---TCATGTA-ATTTGGAAAATATTGATAATGGAAAAACCCAAATTCTGCCAAAATATGTT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839031 96 + 122973662 AACATGTGGTAATTTTAAATCAGTTTTGGGATTAAAAA---TCACATAGTTTGGGAACATATTAATAATGGAAAAACCCAAATTCTCCCAAAATATGTT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          374435 96 +    434444 AACATACGGTAATTTTAAATCAGTTTTGGGCTTAAAAG---TCATGTAATTTGGGAAAATATTAATAGTGGAAAAGCCCAAATTCTGTCAAAATATGTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          421920 96 -    438202 AACATACGGTAATTTTAAATCAGTTTTGGGCTTAAAAG---TCATGTAATTTGGGAAAATATTAATAGTGGAAAAGCCCAAATTCTGTCAAAATATGTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471099 96 +  90373283 AACATACGGTAATTTTAAATCAGTTTTGGGCTTAAAAG---TCACGTAATTTGGGAAGATATTAATAGTGGAAAAGCCCAAATTCTGTCAAAATATATT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522036 96 -   1547936 AACATATGGTAATTTTAAATCAGTTTTGGGCTTAAAAG---TCATGTAATTTGGGAAAATATTAATAGTGGAAAAGCCCAAATTCTGTCAAAATATGTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           36958 95 +    168452 AACATACGGTAATTTTAAATCAGTTTTGGGATTAAAAA---TCACATAATTTGGGAA-ATATTAATAATGGAAAAACCCAAATTCTGCCAAAATATGTT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130396421 88 - 210400635 -----AATGTCATTTTAAATCAGTTTTAGTATTAAAAA---TCATGTAATTTGTTCAAAtat---tgatagaaaaacccaaattttgccaaaatatgtt
i calJac3.chr1                 C 0 I 3551
s saiBol1.JH378105              64663872 98 -  72162052 AACATAAGGTAATTTTTGATCAGTCTTGTGATTTAAAAAGGGCACTTAATTTGGGGAAATATTAAtgatgaaaaaatacaaattctgcc-aaacatgtt
i saiBol1.JH378105             I 2340 C 0
e rheMac8.chr15                   527756 4773 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e otoGar3.GL873538              19679062 2854 -  27850971 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=-100.000000
s hg38.chr14_GL000009v2_random     42039 1 +    201709 -g
s panTro5.chr9                  41721585 1 + 116767853 -g
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070238 1 - 114479721 -g
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            7682 1 +     53730 -g
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839127 1 + 122973662 -g
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          374531 1 +    434444 -g
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422016 1 -    438202 -g
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471195 1 +  90373283 -g
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522132 1 -   1547936 -g
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37053 1 +    168452 -g
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64663970 1 -  72162052 t-
i saiBol1.JH378105             C 0 C 0
e calJac3.chr1                 130396509 3551 - 210400635 I
e rheMac8.chr15                   527756 4773 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e otoGar3.GL873538              19679062 2854 -  27850971 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=27841.000000
s hg38.chr14_GL000009v2_random     42040 5 +    201709 agaaa
s panTro5.chr9                  41721586 5 + 116767853 agaaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070239 5 - 114479721 agaaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            7683 5 +     53730 agaaa
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839128 5 + 122973662 agaaa
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          374532 5 +    434444 agaaa
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422017 5 -    438202 agaaa
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471196 5 +  90373283 agaaa
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522133 5 -   1547936 agaaa
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37054 5 +    168452 agaaa
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130400060 5 - 210400635 agaaa
i calJac3.chr1                 I 3551 C 0
s saiBol1.JH378105              64663971 5 -  72162052 aaaga
i saiBol1.JH378105             C 0 I 1162
e rheMac8.chr15                   527756 4773 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e otoGar3.GL873538              19679062 2854 -  27850971 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=440320.000000
s hg38.chr14_GL000009v2_random     42045 106 +    201709 atagagggtaaatatatcttttcaaactttaaatgcctcaggctcttagttaatcttccccagatctggaaagacctagaaggg--gaga--ttgggctaccttaatgag---------------------------------------------
s panTro5.chr9                  41721591 108 + 116767853 atagagggtaaatatatcttttcagactttaaatgcctcaggctcttagttaatcttccccagatctgggaagacctataaggg--gagagattgggctacattaatgag---------------------------------------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070244 108 - 114479721 atagagggtaaatatatcttttcagactttaaatgcctcaggctcttagttaatcttccccagatctgggaagacctataaggg--gagagattgggctacattaatgag---------------------------------------------
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            7688 108 +     53730 atagagggtaaatatatcttttcagactttaaatgcctcaggctcttagttaatcttccccagatctgggaagacctagaaggg--gagagattgggctacgttaatgag---------------------------------------------
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839133 108 + 122973662 atagagggtaaatatatcctttcagactttaaatgcatcaggcacttagttaatcttccccagatctgggaagacctagaaggg--gagagattgggctacgttaatgag---------------------------------------------
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          374537 104 +    434444 atagagggtaaatatatcttttcagactttaaatgtttcaggctc----ttaatcttccccatatctgggaaaacctagaaggg--gagagactgggttacattaatgag---------------------------------------------
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422022 104 -    438202 atagagggtaaatatatcttttcagactttaaatgtttcaggctc----ttaatcttccccatatctgggaagacctagaaggg--gagagactgggttacattaatgag---------------------------------------------
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471201 106 +  90373283 atagagggtaaatatatcttttcagactttaaatgcttcaggctc----ttaatcttccccatatctgggaagacctagaaggggagagagactgggttacattaatgag---------------------------------------------
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522138 104 -   1547936 atagagggtaaatatatcttttcagactttaaatgtttcaggctc----ttaatcttccccatatctgggaagacctagaaggg--gagagactgggttacattaatgag---------------------------------------------
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37059 108 +    168452 atagaagactaatatatattttcagatattaaatgcatcaggctcttaattaatcttccccagaactgggaagacctagaaggg--gagagattgggctacattaatgag---------------------------------------------
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130400065 153 - 210400635 atagagggtaaaaatatcttttcagattttaaatacaccaggctcttaggtaatcttctctagatctggaaagacctagaaggg--gagagattgggctacattaatgaagacttcctacagatgcaatttctcccacagaagacagcttcccag
i calJac3.chr1                 C 0 C 0
e rheMac8.chr15                   527756 4773 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e otoGar3.GL873538              19679062 2854 -  27850971 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64663976 1162 -  72162052 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=985071.000000
s hg38.chr14_GL000009v2_random     42151 204 +    201709 ggccatttcaatctcttggccctgcagcagccatttcaaaatacgtcaaaaaa--tatat----ttgtgggtaaaatattttgatttccttcagcttcttctctctgtgatgctgcaccagaatcagattagaaaggaagccatattataagtgttaat-aaaacccatctgatgagatttgatagtttgaagggtgtgttt-cccagaccc
s panTro5.chr9                  41721699 198 + 116767853 ggccatttcaatctcttggccctgcagcagccatttcaaaatatgtcaaaaaa---atat----ttaggggtaaaatattttgatttccttcagcttctt-----tgtgatgctgcaccagaatcaggttagaaaggaagccacataataagagttaat-taaacccacctgatgagatttgatagtttgaagagtgtgatt-cccagatcc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070352 199 - 114479721 ggccatttcaatctcttggccctgcagcagccatttcaaaatatgtcaaaaaa--tatat----ttaggggtaaaatattttgatttccttcagcttctt-----tgtgatgctgcaccagaatcaggttagaaaggaagccacataataagagttaat-tcaacccatctgatgagatttgatagtttgaagagtgtgatt-cccagatcc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            7796 206 +     53730 ggccatttcaatctcttggccctgcagcagccatttcaaaatatgacaaaaaaaatatat----ttgggggtaaaatattttgatttccttcagcttcttctctctgtgatgctgcaccagaatcaggttagaaaggaagccacattataagagttaac-aaaacccatctgatgagatttgatagtttgaagggtgtgatt-cccagaccc
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839241 205 + 122973662 ggccatttcaatctctttgccctgcagcagccatttcaaaatatgtcagaaaa-atatat----ttgggggttaaatagttcgatttccttcagcttcttctctctgtgatgctgtaccagaatcaggtgagaaagtaagctgcaatataagagttaat-aaaacccatctgatgagatttgatagtttgaagcgtgtgatt-cccagacca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   532529 207 - 111343173 ggccatttcaatttcttggtcctgcaacagccatttcaaaatatgt-caaaaa--tatatatatttgggggtaaaatactttgatttttttcaggttcttctctctgtgatgctgtaccagaatcgcattagaaagtaagccacgtcataagagttaat-aaaacctgtctgatgagatttgatagtttgaagggtgtgatt-cccagaccc
i rheMac8.chr15                I 4773 C 0
s macNem1.NW_012012823v1          374641 205 +    434444 ggccatttcaatctcttggccctgcagcagccatttcaaaatatgt-aaaaaa--aatata---tttggggttaaatatgttgatttccttcagcagcttctctctgtgatgctgtaccagaatcaggttagaaagtaagccacattataagagttaataaaaacccatctgatgagattttatagtttgaagcatgcgatt-cctagaccc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422126 205 -    438202 ggccatttcaatctcttggccctgcagcagccatttcaaaatatgt-aaaaaa--aatata---tttggggttaaatattttgatttccttcagcagcttctgtctgtgatgctgtaccagaatcaggttagaaagtaagccacattataagagttaataaaaacccatctgatgagattttatagtttgaagcatgcgatt-cctagaccc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471307 205 +  90373283 ggccatttcaatctcttggccctgcagcagccatttcaaaatatgtaaaaaaa--aatata---tttggggttaaatattttgatttccttcagcagcttctctctgtgatgctgtaccagaatcaggttagaaagtaagccacattataagagttaat-aaaacccatctggtgagtttttatagtttgaagcatgtgatt-cctagaccc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522242 204 -   1547936 ggccatttcaatctcttggccctgcagcagccatttcaaaatatgt-aaaaaa--tgtata---tttggggttaaatattttgatttccttcagcagcttctctctgtgatgctgtaccagaatcaggttagaaagtaagccacattataagagttaat-aaaacccatctgctgagattttatagtttgaagcatgcgatt-cctagaccc
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37167 204 +    168452 ggccatttcaatcttttggccctgcagcagccattttaaaatatgtcaaaaaa--tacat----ttaggggttaaatattttgatttccttcagcttctttactctgtgatgctggaccagaatcaggttagaaagtaagccacattataagagttaat-aaaacccatctgatgagattttatagtttgaagcatgtgatt-cccagaccc
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130400218 206 - 210400635 ggccattttaatctcttggccctgtggcagtcgtttgaaaatatgtcaaagaa-atatat----ttgggggtaaaatattttgatttccttcagcttctgcaatctgtgaggctgtacaagaatcagtttagagagtaaggcacattataagagttgaa-aaaacccatctgatgagattttatagtttgaagggtatgattccccagtccc
i calJac3.chr1                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e otoGar3.GL873538              19679062 2854 -  27850971 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64663976 1162 -  72162052 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=211926.000000
s hg38.chr14_GL000009v2_random     42355 45 +    201709 tttagatagaaattggggccaaggaaaacaaggtcttattcctcT
s panTro5.chr9                  41721897 45 + 116767853 tttagatagaaattggggccaaagaaaacaaggtcttattcctca
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070551 45 - 114479721 tttagatagaaattggggccaaagaaaacaaggtcttattcctca
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8002 45 +     53730 tttagatagaaattggggccaaggaaaacaaggtcttattcctca
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839446 45 + 122973662 tttagatggaaattggggccaaagaaaaaaaggtcttattcctca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   532736 45 - 111343173 tttagatagaaattggggcaaaagaaTACAAGGTCTTTCTCCTCA
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          374846 37 +    434444 ttt--------attggggccaaaggaaacaaggtcttattcctca
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422331 37 -    438202 ttt--------attggggccaaaggaaacaaggtcttattcctca
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471512 45 +  90373283 tttagatagaaattggggccaaaggaaacaaggtcttattcctca
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522446 37 -   1547936 ttt--------attggggccaaaggaaacaaggtcttattcctca
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37371 45 +    168452 tctggatggaaattggagccaaagaaaacaaggtcttattcctca
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130400424 45 - 210400635 tttggatagaaattggggcaaaagaaaacaaGTTCTTATTCCTCG
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19681916 45 -  27850971 TTTAATTAGTTTTTGGACCAAAAAAAAATCAGTTAATTTTGGGAA
i otoGar3.GL873538             I 2854 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e dasNov3.JH570393               1781452 3171 -   2296528 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64663976 1162 -  72162052 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=13780.000000
s hg38.chr14_GL000009v2_random     42400 2 +    201709 AT
s panTro5.chr9                  41721942 2 + 116767853 AT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070596 2 - 114479721 AT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8047 2 +     53730 AT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839491 2 + 122973662 AT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   532781 2 - 111343173 AT
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          374883 2 +    434444 AT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422368 2 -    438202 TT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471557 2 +  90373283 AT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522483 2 -   1547936 AT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37416 2 +    168452 AT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130400469 2 - 210400635 AT
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19681961 2 -  27850971 AT
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1784623 2 -   2296528 AT
i dasNov3.JH570393             I 3171 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e canFam3.chr2                  79141527 4305 -  85426708 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64663976 1162 -  72162052 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=298470.000000
s hg38.chr14_GL000009v2_random     42402 48 +    201709 ATAAATCTGTCAGTGCTTTAAGCAGCGAAAGAAAGATTTTTCATTGAA
s panTro5.chr9                  41721944 48 + 116767853 ATAAATCTGTCAGTGCTTTAAGCAGTGAAAGAAAGATTTTTCATTTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070598 48 - 114479721 ATAAATCTGTCAGTGCTTTAAGCAGTGAAAGAAAGATTTTTCATTTAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8049 44 +     53730 ATAAATCTGTCAGTGCTTTAAGCAGT----GAAAGATTTTTCATTTAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839493 48 + 122973662 ATAAATCTCTCAGTGCTTTAAGCAGTGAAAGAAAGATTTTTCATTTAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   532783 44 - 111343173 ATAAATCTCTCAGTGCTTTAAGCGGC----GAAAGATTTTTCATTTAA
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          374885 44 +    434444 ATAAATCTCTCAGTGCTTTAAGCAGT----GAAAGATTTTTCATTTAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422370 44 -    438202 ATAAATCTCTCAGTGCTTTAAGCAGT----GAAAGATTTTTCATTTAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471559 44 +  90373283 ATAAATCTCTCAGTGCTTTAAGCAGT----GAAAGATTTTTCATTTAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522485 44 -   1547936 ATAAATCTCTCAGTGCTTTAAGCAGT----GAAAGATTTTTCATTTAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37418 48 +    168452 ATAAATCTCTCAGCACTTTAAGCAGTGAAAGAAAGATTTTTCATTTAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130400471 45 - 210400635 ATAAATCTTTCAGTGCTTTAAGTAGTGAAAGAAAGATTTTTTTCC---
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19681963 45 -  27850971 ATAAATTTCTTAGTGCTTTCAGCAGTGAAATAAAGATCTTT---TTAA
i otoGar3.GL873538             C 0 I 7
s canFam3.chr2                  79145832 48 -  85426708 ATAAATCACTCCATGCTTTGAGCAGTGAAATACTGATTTGTATGTTAA
i canFam3.chr2                 I 4305 C 0
s dasNov3.JH570393               1784625 48 -   2296528 TTAATTCACTCAGTGTTTTGAACTGTGAAATAAAGTTTTTTCTATTAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6431851 3588 -   6597006 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64663976 1162 -  72162052 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=252646.000000
s hg38.chr14_GL000009v2_random     42450 29 +    201709 TTTTACAGACTTGATACTAATGAAAAGGA
s panTro5.chr9                  41721992 29 + 116767853 TTTTACAGACTTGATACTAATGAAAAGGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070646 29 - 114479721 TTTTACAGACTTGATACTAATGAAAAGGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8093 29 +     53730 TTTTACAGACTTGAAACTAATGAAAAGGA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839541 29 + 122973662 TTTTACAGACTTGATACTAATGAAAACGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   532827 29 - 111343173 TTTTACAGACTTGATGCTAATAAAAAGGA
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          374929 29 +    434444 TTTTACAGACTTGATACTAATAAAAAGGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422414 29 -    438202 TTTTACAGACTTGATACTAATAAAAAGGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471603 29 +  90373283 TTTTACAGACTTGATACTAATAAAAAGGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522529 29 -   1547936 TTTTACAGACTTGATACTAATAAAAAGGA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37466 29 +    168452 TTTTACTGACTTGATACTAATGAAGAGAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130400516 18 - 210400635 -TTTACAGACTTGATACTA----------
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64665138 29 -  72162052 TTTTACAGAATTGATGCTAATGGAAAGGA
i saiBol1.JH378105             I 1162 C 0
s aotNan1.NW_018488791v1         6435439 29 -   6597006 TTTTACAGACTTGATGCTAATGGAAAGGA
i aotNan1.NW_018488791v1       I 3588 I 200
s otoGar3.GL873538              19682015 29 -  27850971 TTTTATGGACTTGATACTAATGAAAAGAA
i otoGar3.GL873538             I 7 C 0
s canFam3.chr2                  79145880 15 -  85426708 TTTTGCATACTTGAT--------------
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1784673 29 -   2296528 CTTTATAGATTTGATACCAGTGGAAAAAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=12057.000000
s hg38.chr14_GL000009v2_random     42479 2 +    201709 TA
s panTro5.chr9                  41722021 2 + 116767853 TA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070675 2 - 114479721 TA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8122 2 +     53730 TA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839570 2 + 122973662 TA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   532856 2 - 111343173 TA
i rheMac8.chr15                C 0 I 196
s macNem1.NW_012012823v1          374958 2 +    434444 TA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422443 2 -    438202 TA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471632 2 +  90373283 TA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522558 2 -   1547936 TA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37495 2 +    168452 TA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64665167 2 -  72162052 CA
i saiBol1.JH378105             C 0 I 1
s otoGar3.GL873538              19682044 2 -  27850971 TG
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1784702 2 -   2296528 CA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130400534 0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79145895 0 -  85426708 C
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=7733.000000
s hg38.chr14_GL000009v2_random     42481 4 +    201709 GCTT-
s panTro5.chr9                  41722023 4 + 116767853 GCTT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070677 4 - 114479721 GCTT-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8124 4 +     53730 GCTT-
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839572 4 + 122973662 GTTT-
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          374960 4 +    434444 GTTT-
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422445 4 -    438202 GTTT-
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471634 4 +  90373283 GTTT-
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522560 4 -   1547936 GTTT-
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37497 4 +    168452 GTTT-
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64665170 3 -  72162052 GTT--
i saiBol1.JH378105             I 1 I 276
s otoGar3.GL873538              19682046 4 -  27850971 TCTT-
i otoGar3.GL873538             C 0 I 1
s dasNov3.JH570393               1784704 5 -   2296528 ACTCT
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130400534 0 - 210400635 C
e rheMac8.chr15                   532858 196 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79145895 0 -  85426708 C
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=21536.000000
s hg38.chr14_GL000009v2_random     42485 7 +    201709 GTAAAAT
s panTro5.chr9                  41722027 7 + 116767853 TTCAAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070681 7 - 114479721 TTCAAAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8128 7 +     53730 TTAAAAT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839576 7 + 122973662 TTAAAAT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          374964 7 +    434444 TTAAAAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422449 7 -    438202 TTAAAAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471638 7 +  90373283 TTAAAAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522564 7 -   1547936 TTAAATT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37501 7 +    168452 TTAAAAC
i colAng1.NW_012121088v1       C 0 C 0
s otoGar3.GL873538              19682051 7 -  27850971 TTACTGT
i otoGar3.GL873538             I 1 C 0
s dasNov3.JH570393               1784709 7 -   2296528 TTTATGT
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130400534 0 - 210400635 C
e rheMac8.chr15                   532858 196 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79145895 0 -  85426708 C
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e saiBol1.JH378105              64665173 276 -  72162052 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=20694.000000
s hg38.chr14_GL000009v2_random     42492 8 +    201709 ATAAATCT
s panTro5.chr9                  41722034 8 + 116767853 ATAAATCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070688 8 - 114479721 ATAAATCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8135 8 +     53730 ATAAATCT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839583 8 + 122973662 ATAAACCT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          374971 8 +    434444 ACAAATTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422456 8 -    438202 ACAAATTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471645 8 +  90373283 ACGAATTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522571 8 -   1547936 ACAAATTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37508 8 +    168452 ATAAATCT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64665449 8 -  72162052 ATATATTA
i saiBol1.JH378105             I 276 C 0
s otoGar3.GL873538              19682058 4 -  27850971 ----ATCA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79145895 4 -  85426708 --ATAT--
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1784716 8 -   2296528 ATTGTTTT
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130400534 0 - 210400635 C
e rheMac8.chr15                   532858 196 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e cebCap1.NW_016107851v1         1073371 4610 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=17023.000000
s hg38.chr14_GL000009v2_random     42500 3 +    201709 CTT
s panTro5.chr9                  41722042 3 + 116767853 CTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070696 3 - 114479721 CTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8143 3 +     53730 CTT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839591 2 + 122973662 -TT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          374979 3 +    434444 TTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422464 3 -    438202 TTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471653 3 +  90373283 TTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522579 3 -   1547936 TTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37516 3 +    168452 TTC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64665457 3 -  72162052 CTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1077981 3 +   1314817 CTT
i cebCap1.NW_016107851v1       I 4610 C 0
s otoGar3.GL873538              19682062 2 -  27850971 -TT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79145899 3 -  85426708 TTT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1784724 3 -   2296528 TCT
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130400534 0 - 210400635 C
e rheMac8.chr15                   532858 196 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=31410.000000
s hg38.chr14_GL000009v2_random     42503 3 +    201709 TTT
s panTro5.chr9                  41722045 3 + 116767853 TTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070699 3 - 114479721 TTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8146 3 +     53730 TTT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839593 3 + 122973662 TTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   533054 3 - 111343173 ttt
i rheMac8.chr15                I 196 C 0
s macNem1.NW_012012823v1          374982 3 +    434444 TTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422467 3 -    438202 TTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471656 3 +  90373283 TTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522582 3 -   1547936 TTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37519 3 +    168452 TTT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130400534 2 - 210400635 -TT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64665460 3 -  72162052 TTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1077984 3 +   1314817 TTT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19682064 3 -  27850971 TTT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79145902 3 -  85426708 TTT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1784727 3 -   2296528 CTC
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=75196.000000
s hg38.chr14_GL000009v2_random     42506 10 +    201709 CTATAAAAAG--
s panTro5.chr9                  41722048 10 + 116767853 CTATAAAAAG--
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070702  9 - 114479721 CTAT-AGAAG--
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8149 10 +     53730 CTATGAAAAG--
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839596 10 + 122973662 CTATAAAAAG--
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   533057 10 - 111343173 ctataCAAAA--
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          374985 10 +    434444 CTATAAAAAG--
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422470 10 -    438202 CTATAAAAAG--
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471659 10 +  90373283 CTATAAAAAG--
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522585 10 -   1547936 CTATAAAAAG--
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37522 10 +    168452 CTATAAAAAG--
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130400536 10 - 210400635 CTGTAAAAAG--
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64665463 10 -  72162052 CAATAAAAAG--
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1077987 10 +   1314817 CAATAAAAAG--
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19682067 10 -  27850971 CTATAAAAAG--
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1784730 10 -   2296528 --ATAAAAAAAG
i dasNov3.JH570393             C 0 I 1431
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79145905  0 -  85426708 C
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=574437.000000
s hg38.chr14_GL000009v2_random     42516  87 +    201709 GA-CATGTTGTTGATTCTCTTAGACCTTGAACCCTGGCCAGTGATTTGAAACCAAGCAG--------TACCTATCTGCAG---------------ATCTCTAGTA---------------CCAAAT
s panTro5.chr9                  41722058 102 + 116767853 GA-CATGCTGTTGATTCTCTTAGGCCTTGAACCCTGCCCAGTGATCTGAAACCAAGCAG--------TACCTGTCTCCAG---------------ATCACTAGTATGAAAATCACTAGTACCAAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070711 102 - 114479721 GA-CATGCTGTTGATTCTCTTAGGCCTTGAACCCTGCCCAGTGATCTGAAACCAAGCAG--------TACCTGTCTCCAG---------------ATCACTAGTACCAAAATCACTAGTACCAAAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8159 102 +     53730 GA-CATGCTGTTGATTCTCTTAGGCCTTGAACCCTGGCCAGTGATCTGAAACCAAGCAG--------AACCTGTCTCCAG---------------ATCACTAGTACCAAAATCACTAGTACCAAAT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839606  87 + 122973662 AA-CATGCTGTTGATTCTCTTATGTCTTGAACTTTCGCCAGTGATATGAAACCAAGCAG--------TACCTGTCTCCAG---------------ATCACTAGTA---------------CCAAAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   533067  87 - 111343173 GA-CATGCTGTTGATTCTCTTATGTCTTGAACCCTGGCCAGTGGTCTGAAACCAAGCAG--------CCCATGTCTCCAG---------------ATCACTAGTA---------------CCAAAT
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          374995  87 +    434444 GA-CATGCTGTTGATTCTCTTATGTCTTGAATTCTGGCAAGTGATGTGAAACGAAGCAG--------TACCTGTCTCCAG---------------ACCACTAGTA---------------CCAAAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422480  82 -    438202 GA-CATGCTGTTGATTCTCTTATGTCTTGAATTCTGGCAAGTGATGTGAAACGAAGCAG--------TACCTGTCTC--------------------CACTAGTA---------------CCAAAC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471669  87 +  90373283 GA-CATGCTGTTGATTCTCTTATGTCTTGAATTCTGGCAAGTGATCTGAAATAAAGCAG--------TACCTGTCTCCAG---------------ATCACTAGTA---------------CCAAAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522595  87 -   1547936 GA-CATGCTGTTGATTCTCTTATGTCTTGAATTCTGGCAAGTGATGTGAAACGAAGCAG--------TACCTGTCTCCAG---------------ACCACTAGTA---------------CCAAAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37532 102 +    168452 GA-CATGCTGTTGATTCTCTTAGGCCTTGACCTCTGGCCAGTGATCTGAAACCAAGCAA--------CGTCTGTCTCCAGATCACTAGTACCAAAATCACTAGTA---------------CCAAAT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130400546  88 - 210400635 GGACATGCTGTTGATTCTCTTATGTCTTGAACCCTGGCCAGTGATCTGAAACCAAGCAG--------TACATGTCTCCAG---------------ATCACTAGTA---------------CCAAAT
i calJac3.chr1                 C 0 I 3806
s saiBol1.JH378105              64665473  95 -  72162052 GG-CATGCTGTTAATTCTCTTATGTCATAAACCGTGGCCAATGATCTGAAACCAAGCAATACACTGTTACATGACTTCAG---------------ATCACTAGCA---------------CCAAAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1077997  95 +   1314817 GG-CATGCTGTTGATTCTCTTATGTCTTAAACCGTGGCCAATGATCTGAAACCAAGCAATACACTGTTACATGACTCCAG---------------ATCACTAGCA---------------CCAAAT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19682077  90 -  27850971 GG-CATACTGTTGATTCTTTTATGTCCTAAAGCCTGGCCAATGATCTAA----TGGCAGTATACCTTCACATGA-TCCAA---------------ATCACTGTTA---------------CCTAAA
i otoGar3.GL873538             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79145905   0 -  85426708 C
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=9953.000000
s hg38.chr14_GL000009v2_random     42603 15 +    201709 -TAATTT----------GGGGTGGG-G
s panTro5.chr9                  41722160 15 + 116767853 -TAATTT----------GAGGTGGG-T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070813 15 - 114479721 -TAATTT----------GAGGTAGG-T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8261 14 +     53730 -TAATTT----------GGGGTGGG--
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839693 16 + 122973662 -TAATTT----------GGGGGGGCTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   533154 11 - 111343173 -AAATTT--------------CAGG-G
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          375082 25 +    434444 -TAATTTGTGTGGGAGGGGGGTGGT-G
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422562 25 -    438202 -TAATTTGTGTGGGAGGGGGGTGGT-G
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471756 25 +  90373283 -TAATTTGTGTGGGAGGGGGGTGGT-G
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522682 25 -   1547936 -TAATTTGTGTGGGAGGAGGGTGGT-G
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37634 15 +    168452 -TAATTT----------GGGGCAGA-G
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64665568 10 -  72162052 -AAATTT---------------GGA-G
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1078092 10 +   1314817 -AAATTT---------------GGA-G
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19682167 11 -  27850971 CTAATTG---------------TTC-T
i otoGar3.GL873538             C 0 C 0
e calJac3.chr1                 130400634 3806 - 210400635 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79145905  0 -  85426708 C
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1496211.000000
s hg38.chr14_GL000009v2_random     42618 225 +    201709 GGtaacaggtttattgagaaataatgaac----acgccatg-caattcactcatttaaagtatagaattcattaac-tttagtattttcagagagttatgccgtcatcattacaattaattttagaacattttcatcaccctaaaaacaaaccccacatcatttagccatc-ttc----actagttttcccttcc-----tccctcagccctagggaaccacccacct--tctttg----tatagat
s panTro5.chr9                  41722175 225 + 116767853 GGtaataggtttactgagaaaaaatgaac----acaccatg-caattcactcatttaaaatatacaattcattaac-tttaatattttcagagagttatgcagtcatcattacaatcaattttagaacattttcatcaccctaaaaacaaaccccacatcatttagccatc-ttc----actagttttcccgtct-----tccttcagccctagggaaccacccacct--tctttg----tatacat
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96070828 224 - 114479721 GGCaacaggtttattgagaaataatgaac----acactgtg-caattcactcatttaaaatatacaattcattaac-tttagtattttcagagagttatgcagtcatcattacaatcaatttt-gaacattttcatcaccctaaaaacaaaccccacatcatttagccatc-ttc----actagttttcccgtct-----tccttcagtcctagggaaccacccacct--tctttg----tatacat
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8275 224 +     53730 GGtaacaggtttattgagaaataatgaac----acaccatg-cagttcactcatttaaaatatacaatttattaac-tttagtattttcagagagttatgcagtcatcattacaatcaattgtagaacattttcatcaccctaaaaacaaaccccacatcatttagctatc-ttc----actagttttcccttcc-----tccctcagccctaggtaacca-ccacct--tctttg----tatagat
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839709 224 + 122973662 GGtaacaggtttattgagaaataatgaac----acaccatg-caattcactcatttaaaatatacaagtcattgac-ttcagtattttcagagagttatgcagtcatcattacaatcaattttagaacattttcatctccctgaaaacaaaccccacatcacttagccgtc-ttc----actagtttt-ccttcc-----tccctcagccctagggaaccacccacct--tctttg----tacagat
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   533165 223 - 111343173 TGtaacaagtttattgagaaataattaac----acacgatg-cagttcactcatttaaaatatacaattcattgac-tttagtattttcag--agttatgcagtcatcattacaatcaattttagaacattttcatcaccctaaaaacaaaccccatatcatttagccata-ttc----actagttttctgttcc-----tccctcagccctaggtaaccacccacct--tctttg----tatagat
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          375107 225 +    434444 CAtaacaggtttattgagaaatcttgaac----acaccatg-caatttactcatttaaaatatacaagtcattgac-tttaatattttcagacagttatgcagtcatcattacaatcaattttagaacattttcgtcaccctaaaaacaaaccccacatcatttagccatc-ttc----actagttttcccttcc-----tccctcagccctagggaaccacccacct--tctttg----tatggat
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422587 225 -    438202 CGtaacaggtttattgagaaatcttgaac----acaccatg-caatttactcatttaaaatatacaagtcattgac-tttaatattttcagacagttatgcagtcatcattacaatcaattttagaacattttcatcaccctaaaaacaaaccccacatcatttagccatc-ttc----actagtttccccttcc-----tccctcagccctagggaaccacccacct--tctttg----tatggat
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66471781 225 +  90373283 CAtaacaggtttattgagaaatattgaac----acaccatg-caatttactcatttaaaatattcaagtcattgac-tttagtattttcagacagttatgcagtcatcattacaatcaattttagaacattttcatcaccctaaaaacaaaccccacatcatttagccatc-ttc----actagtttgcccttcc-----tccctcagccctagggaaccacccacct--tctttg----tatagat
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522707 225 -   1547936 CGtaacaggtttattgagaaatcttgaac----acaccatg-caatttactcatttaaaatatacaagtcattgac-tttaatattttcagacagttatgcagtcatcattacaatcaattttagaacattttcatcaccctaaaaacaaaccccacatcatttagccatc-ttc----actagttttcccttcc-----tccctcagccctagggaaccacccacct--tctttg----tatggat
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37649 224 +    168452 GAtaacaggtttattgagaaataatgaac----acaccatg-caattcactaa-tcgtaatatacaagtcattgac-tttcatattttgagagaggtatgcagtcctcgttacaatcaattttagaacattttcatcaccctaaaaacaaaccccacattatttagccatc-ttc----actagtttccccctcc-----tccctcagccctagggaaccacccacct--tctttg----tatagat
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64665578 223 -  72162052 GAAaacaggtttattgagatataattaac----acaccatg-caattcactcatttaaagtacacaattcactgacttttagtatcttcgcagagttatgcaatcatc---acgatcaattttagaacattttcattgccctaaaaagaagcaccacattatttagccatc-ccc----accagtctccgcttcc-----tccctcagccttaaggaaccacctgcct--tctttg----tgtagat
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1078102 222 +   1314817 GAAaacagttttattgagatataattaac----acaccatg-caattcactcatttaaagtacacaattcattgacttttagt-ttttcacagagttatgcaatcatc---acgatcaattttagaacattttcattaccctaaaaagaaacctcacattatttagccatc-ctc----actagtttccccttcc-----tcccacagccttagggaaccacctgcct--tctttg----tatagat
i cebCap1.NW_016107851v1       C 0 I 249
s otoGar3.GL873538              19682178 229 -  27850971 GGtaacagctttcttgagatttagttaatattaatactgtgacaattcactaatttaaga-atacaattcagtggcttttagtatactcactggattatacagtcataaccacaattaattttagaaca---tcatcaccctaaa---aagccccatgtcctttagttgtcatcc----accagttttcccttcc-----ttgctcagccctagggagccaccagtct--actttgtttctatagat
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79145905 174 -  85426708 GGCAATAACTTTATTGAGATATAATGAAC----ATAAGatt---------------------------------ac----------------------------------cacaatccattttagaacatttt-gtcaccctaaaaagaaaccctacaccctttaactgtc-acctcatgctagtttccccttccctattcttcttagccataaggagttgttactctactctctgtctctatagat
i canFam3.chr2                 C 0 C 0
e calJac3.chr1                 130400634 3806 - 210400635 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=389279.000000
s hg38.chr14_GL000009v2_random     42843 71 +    201709 ---ttgcct------------a---taagcctc-----t----------gaaataaaaagcaa---gtggtctgctgggactggcttatttcacttagcataa--tttt
s panTro5.chr9                  41722400 71 + 116767853 ---tcgcct------------a---taagcctc-----t----------gaaataaaaagcaa---gtggtctgctgtgactggcttatttcacttagcataa--tttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96071052 71 - 114479721 ---tcgcct------------a---taagcctc-----t----------gaaatgaaaagcaa---gtggtctgctgtgactggcttatttcacttagcataa--tttt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8499 70 +     53730 ---ttgcct----------------taagcctc-----t----------gaaatgaaaagcaa---gtggtctaccgtgactggcttatttcacttagcataa--tttt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40839933 71 + 122973662 ---ttgcct------------a---taagcctc-----t----------gaaataaaaagcaa---gtggtctactgtgactggcttatttcacttagcataa--tttt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   533388 71 - 111343173 ---ttgcct------------a---taagcctc-----t----------gaaataaaaagcaa---gtggtctactgtgactggcttatttcactcagcataa--tttt
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          375332 71 +    434444 ---ttgcct------------a---taagcctc-----t----------gaaataaaaagcaa---gtggtctactgtgactggcttatttcacttagcataa--tttt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422812 71 -    438202 ---ttgcct------------a---taagcctc-----t----------gaaataaaaagcaa---gtggtctactgtgactggcttatttcacttagcataa--tttt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66472006 71 +  90373283 ---ttgcct------------a---taagcctc-----t----------gaaataaaaagcaa---gtggtctacagtgactggcttatttcacttagcataa--tttt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1522932 71 -   1547936 ---ttgcct------------a---taagcctc-----t----------gaaataaaaagcaa---gtggtctactgtgactggcttatttcacttagcataa--tttt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37873 71 +    168452 ---ttgcct------------a---taagcctc-----t----------gaaataaaaagcaa---gtggtctacagtgactggcttagttcacttagcataa--tttt
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64665801 83 -  72162052 ---ctgtat------------attttgaacatttcgtat----------caattgaatcgcaatatgtggtctattgtgactggcttctttaacttagcataac-tttt
i saiBol1.JH378105             C 0 C 0
s otoGar3.GL873538              19682407 87 -  27850971 ---ccacctgcacctacttgga---cattcatc-----t----------taaccaaagcaccatatgt-gtcttttgtgactggcttctttcacttagcttaatgtttt
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79146079 87 -  85426708 ttgttgctg------------attttggacatt-----tcgtatcaatggaatcacaaaatat---tttatcttttctgactgccttctttcctttagcacat--cttt
i canFam3.chr2                 C 0 I 14
e calJac3.chr1                 130400634 3806 - 210400635 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1078324 249 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=123159.000000
s hg38.chr14_GL000009v2_random     42914 24 +    201709 tcatgctgcatctgtgctgtagca
s panTro5.chr9                  41722471 24 + 116767853 tcatgctgcatctgtgctgtagta
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96071123 24 - 114479721 ccatgctgcatctgtgctgtagta
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8569 24 +     53730 ccatgctgcatctgtgctgcagca
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40840004 24 + 122973662 tcatgctgcatctgtgttgtaaca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   533459 24 - 111343173 tcatgatgcatctgtgctatagca
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          375403 24 +    434444 tcatgctgcatctgtgttgtagca
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422883 24 -    438202 tcatgctgcatctgtgttgtagca
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66472077 24 +  90373283 tcatgctgcatctgtgttgtagca
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1523003 24 -   1547936 tcatgctgcatctgtgttgtagca
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37944 24 +    168452 tcatgctgcatctgtgctgtagca
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64665884 18 -  72162052 ccaagcttcatctgtgta------
i saiBol1.JH378105             C 0 C 0
s otoGar3.GL873538              19682494 23 -  27850971 ccagggt-catctatgttgtagct
i otoGar3.GL873538             C 0 C 0
e calJac3.chr1                 130400634 3806 - 210400635 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79146166 14 -  85426708 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1078324 249 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=109865.000000
s hg38.chr14_GL000009v2_random     42938 27 +    201709 ggtattgatgctgggtttttgctcctt
s panTro5.chr9                  41722495 27 + 116767853 ggtattgatgccgggtttttgcttctt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96071147 27 - 114479721 ggtattgatgccgggcttttgcttctt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8593 26 +     53730 ggtattgatgcagggttttt-ctcctt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40840028 26 + 122973662 ggtattgatgcagggttttt-ctcctt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   533483 27 - 111343173 ggtattgatgcagggtttttgctcctt
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          375427 26 +    434444 ggtattgatgcggggttttt-ctcctt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422907 26 -    438202 ggtTTtgatgcggggttttt-ctcctt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66472101 26 +  90373283 ggtattgatgtggggttttt-ctcctt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1523027 26 -   1547936 ggtattgatgtggggttttt-ctcctt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37968 27 +    168452 ggtattgatgcagggtttttgctcctt
i colAng1.NW_012121088v1       C 0 C 0
s otoGar3.GL873538              19682517 27 -  27850971 tgtgtcagtccttgatttattcttgtt
i otoGar3.GL873538             C 0 I 2756
e calJac3.chr1                 130400634 3806 - 210400635 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79146166 14 -  85426708 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1078324 249 +   1314817 I
e saiBol1.JH378105              64665902  0 -  72162052 C
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1591236.000000
s hg38.chr14_GL000009v2_random     42965 391 +    201709 agttcagctacatctgtgttcttctctcgtgaccaggaaaaattaagcatgcagacacattgag-------gagggcagaatttattatgtgaaagcacagctctcagcaaagagaggggtcctgcaaagaggtttccacctcacaattgaataccagga-----gcacatgagctgaagcggccaggctcctcctctgcataaggtgtgaattcctggtgactccacccca-tccccccactgcatgtgggcctccagtctgctgtgggcatgtccaggcaagacaa-gtccaggttcccttatctgcacataa-----catctggtgtaaacacttgtggggctcgttggagattctccggggacccttccgtatctgcataggcattttgctgtctcctCCTAA-TA-C
s panTro5.chr9                  41722522 390 + 116767853 agttcagctacacctgggttcttctctcatgaccaggaaaa-ttaagcacgcagacacattgaa-------gaggacagaatttattaagtgaaaggaaagctctcagcaaagagaggggtcctgcaaacaggtttccacctcaaaattgaataccagga-----gcacatgagctgaagcggccaggctcctcctctgcataaagtgtgaattcctggtgactcaacccca-ttcccctagtgcatgtgggcctccagtctgctgcgggcgtgtccaggcaagacaa-gtccagtttccctcatctgcaaataa-----catctggtgtaaacacttgtggggctggttggagattctccccggacccttccgtatctgcctaggcattttgctgtctcctCTTAA-TA-G
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96071174 390 - 114479721 agttcagctacacctgggttcttctctcatgaccaggaaaa-ttaagcacgcagacacattgaa-------gaggacagaatttattaagtgaaaggaaagctctcagcaaagagaggggtcctgcaaacaggtttccacctcacaattgaataccagga-----gcacatgagctgaagcggccaggctcctcctctgcataaggcgtgaattcctggtgactccaccccattccccctagtgcatgtgggcctccggtctgctgcaggcatgtccaggcaagacaa-gtccaggttctcttatctgcacataa-----catctggtgtaaacacttgt-gggctggtgggagattctccggggacccttccgtatctgcctaggaattttgctgtctcctCCTAA-TA-C
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            8619 396 +     53730 agttcagctcaatctgggttcttctctcatgaccaggaaaaattaagcacacagacacattgaagggtgaggaggacagaatttattaagtgaaaggaaagctctcagcaaagaggggcatcctgcaaacaggtttccacctcacaattgaataccagga-----gcacaggagctgaagcggccaggctcccgctctgcataaggcgtgaattcctggtgactccacccca-tccccccagtgcttgtgggcctcgggtctgctgccggcatgtccaggcaagacaa-gtccag--ttccttatctgcacataa-----cgtctggtgtaaacacttgtgaggcttgttggggattctccggggacccttccttatctgcctaggcattttgctgtctcctcctaa-ta-C
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40840054 398 + 122973662 agttcagctacatctgggttcttctctcatgaccaggaaaaattaagcatgcagacacattgaaggatgaggaggacataatttattatgtgaaaggaaagctctcagcaaagagaggggtcctgcaaacaggtttccacctcacaattgaataccagga-----acacatgagctgaagcggccaggctcctcctctgcataaggcgtgaattcctggtgcctccacccca-ttcccccagtgcttgtgggcctctggtctgctgctggcatgtccaggcaagacaa-gtccaggttcccttaactgcacataa-----catctggtgtaaacacttgtggggctggctggagattctccggggacccttccgtatctgcctaggcattttgctgtctcctCCTAA-TA-C
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   533510 354 - 111343173 aattcagctaaatctgggttcttctctcatgatcaggaaaaattaggcacgtggacacactgaagggtgaggaggacagaatttattaagt-----gaaagctctcagcaaagagaagggtcctgcaatcagatttccacctcacaattgaataccaggaccagcacacatgagctgaagaggccaggctcctcctctgcataaggcatgaattcctggtggctccacccca-accccccagtgcatgtgggcctctggtccgctgctggcatgtccaggcaaaaccctgtgcaggttcccttatctacaccagatgttttgtccggtgtagacacttgtgggcccggttggagattctc----------------------------------------------------
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          375453 398 +    434444 agttcagctaaatctgggttcttctctcgtgaccaggaaaaattaagcacgaagacacattgaagggtgaggaggacagaatttattatgtgaaaggaaagctctcagcaaagagaggggtcctgccaacaggtttcgacctcacaattgaatacccgga-----gcacatgagctgaagtggtcaggctcctcccctgcataagatgtgaattcctggtggctacacccca-tccccgcaatgcatgtgggcctccagttcgctgccagcatgtctaggcaagacaa-gtccagtttcctttatctgcacataa-----catctggtgtaaacacttaaggg-ctggttggagattctctggcgacccttctgtatctgcctagacattttgctgtctcctcctcc-tatc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          422933 398 -    438202 agttcagctaaatctgggttcttctgtcatgaccaggaaaaattaagcacgcagacacactgaagggtgaggaggacagaatttattatgtgaaaagaaagctctcagcaaagagaggggtcctgccaacaagtttcgacctcacaactgaataccagga-----gcacatgagctgaagtggccaggctcctcccctgcataagatgtgaattcctagtggctacacccca-tccccccaatgcatgtgggcctccagttcactgccagcatgtctaggcaagacaa-gtccagtttcctttatctgcacataa-----catctggtgtaaacacttaaggg-ctggttggagattctctggcgacccttctgtatctgcctagacattttgctgtctcctcctcc-tatc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66472127 400 +  90373283 agttcagctaaatctgggttcttctctcgtgaccaggaaaaattaagcatgcagacacactgaagggtgaggaggacagaatttattatgtgaaaggaaagctctcagcaaatagaggggtcctgccaacaggtttcaacctcacaattgaataccagga-----gcacatgagctgcagtggtcaggctcctcccctgtataaggcgggaattcctggtgactcctcccca-tccccccagtgcttgtaggcctccagtcctctgccggcatgtccaggcaagacaa-gtccaggttcccttatctgcacataa-----catctggtgtaaacacttaagggactggttggagattctctggcgactgttctgtatctgcctAGACATTTTGCTGTCTCCTCCTCCATATC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1523053 398 -   1547936 agttcagctaaatctgggttcttctctcatgaccaggaaaaattaagcatgcagacacactgaagggtgaggaggacagaatttattaagtgaaaggaaagtgctcagcaaagagaggggtcctgccaacaggtttcgacctcacaattgaataccagga-----gcacatgagctgaagtggccaggctcctcccctgcataagatgtgaattcctggtggctacacccca-tccccccaatgcatgtgggcctccagttcgctgccagcatgtctaggcaagacaa-gtccagtttcctttatctgcacataa-----catctggtgtaaacacttaaggg-ctggttggagattctctggcgacccttctgtatctgcctagacattttgctgtctcctcctcc-tatc
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           37995 398 +    168452 agttcagctaaatctgagttcttctgtcatgaccaggaaaaattaagcatgaagacacattgaagggtgaggaggacagaatttattaagtgaaagaaaagcgctcagcaaagagaggggtcctgcaaacaggtttccacctcacaattgaataccagga-----gtacatgagctgaagtggtcaggctcctcccctgcataaggtgtgaattcctggtgactcctcccca-tccccccagtgcttgtaggcctccagtcctctgctggcatgtccaggcaagacaa-gtccaggttcccttatctgcacataa-----catctggtgtaaacgcttgtgggactgcttgaagattctccggggacacttccgtatctgcctacgcattttgctgtctcctcctaa-ta-c
i colAng1.NW_012121088v1       C 0 C 0
e calJac3.chr1                 130400634 3806 - 210400635 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79146166  14 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1078324 249 +   1314817 I
e saiBol1.JH378105              64665902   0 -  72162052 C
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2104.000000
s hg38.chr14_GL000009v2_random     43356 1 +    201709 G
s panTro5.chr9                  41722912 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96071564 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            9015 1 +     53730 A
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40840452 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012012823v1          375851 1 +    434444 a
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          423331 1 -    438202 a
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66472527 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1523451 1 -   1547936 G
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           38393 1 +    168452 a
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64665902 1 -  72162052 g
i saiBol1.JH378105             C 0 C 0
e calJac3.chr1                 130400634 3806 - 210400635 I
e rheMac8.chr15                   533864 0 - 111343173 C
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79146166 14 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1078324 249 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=219946.000000
s hg38.chr14_GL000009v2_random     43357 43 +    201709 gtatctgtacttaatttcttcttattgctgagtaatattccat
s panTro5.chr9                  41722913 43 + 116767853 gtatctgtacttaattttttcttattgctgagtaatattccat
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96071565 43 - 114479721 gtatctgtacttaatttcttcttattgctgagtaatattccat
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            9016 43 +     53730 gtatcagtacttagtttcttcttattgctgagtgatattccat
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40840453 43 + 122973662 gtatcagtacttaatttcttcttattactgagtaatattcaat
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   533864 16 - 111343173 ---------------------------ctgagtaatattccat
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          375852 43 +    434444 gtatcagtacttaatttcttcttattgctgagtgatattccat
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          423332 43 -    438202 gtatcagtacttaatttcttcttattgctgagtaatactccac
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66472528 43 +  90373283 gtatcagtacttaatttcttcttattgctgagtaatactccac
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1523452 43 -   1547936 gtatcagtacttaatttatttttattgctgagtgatattccat
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           38394 43 +    168452 gtatcagtacttaatttcttcttattgctgagtaatactccac
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64665903 43 -  72162052 gtatcagtactgaatttcttcttactgctgtgtaatatcccat
i saiBol1.JH378105             C 0 C 0
s canFam3.chr2                  79146180 42 -  85426708 gtgtcagtgcttta-ttatttttattgctggataatatcccac
i canFam3.chr2                 I 14 C 0
e calJac3.chr1                 130400634 3806 - 210400635 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1078324 249 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=735219.000000
s hg38.chr14_GL000009v2_random     43400 143 +    201709 tgtatggatacatcaaacattttatttatccattcgccaggtgatggacctttgggttctctcccagccaaaggtgacagacgttctggttctttccaccttttgactactattaataatgctgctgtaaacatttatgtatg
s panTro5.chr9                  41722956 143 + 116767853 tgtatggatatatcaaacattttatttatccattggccaggtgatggaactttgggttttctcccacccaaaggtgatacacgttattgttctttccactttttgactcctattaataatgctgctgtaaacatttatgtatg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96071608 143 - 114479721 tgtatggatatatcaaacattttatttatccattggccaggtgatggaactttgggttttctcccacccaaaggtgatacacgttattgttctttccactttttgactcctattaataatgctgctgtaaacatttatgtatg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            9059 140 +     53730 tgtatggatacatcaaacagtttatttatccattcaccaggtgat-gacctttgggttctttcccacccaaa-gtgatggacgtt-tggttctttccactttttcactcttattaataatgctgctgtaaacatttatgtatg
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40840496 143 + 122973662 tgtatggatatatcaaacagtttatttatccattcgccaggtgatggacctttgggttctttcccacccaaaggtgatggacgttctggctctttccactttttgactcctattaataatgctgctgtaaacatttatgtatg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   533880 109 - 111343173 tgtatggataaatcaaacattttatgtatccattcatgaggtgatggac----------------------------------cttgggttctttccactttttgactcttattaataatgctgctgtaaacatttatgtata
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          375895 143 +    434444 tgtatggatacgtcaaacattttatttatccattcaccaggtgatggacttttgggttctttcccacccaaaggtgatggatgttttggttctttccactttttgactcctgtgaataatgctgctgtaaacatttatgtatg
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          423375 143 -    438202 tgtatggatacatcaaacattttatttatccattcaccaggtgatggacttttgggttctttcccacccaaaggtgatggatgttttggttctttccactttttgactcctgtgaataatgctgctgtaaacatttatgtatg
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66472571 142 +  90373283 tgtatggatacatcaaacattttatttatccattcaccaggtgatggacctttgagttctttcccacccaaaggtgatggacgttttggttctttccac-ttttgactcctgtgaataatgctgctgtaaacatttacatatg
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1523495 143 -   1547936 tgtatggataggtcaaacattttatttatccattcaccaggtgatggacttttgggttctttcccacccaaaggtgatggatgttttggttctttccactttttgactcctgtgaataatgctgctgtaaacatttatgtatg
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           38437 140 +    168452 tgtatggatacataaaacattttatttatccattcgccaggtgatgaacctttgggttct---ccacccaaacgtgatggacgctttggttgtttccactttttgactcctattaataatgctgctgtaaacatttatgtatg
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130404440 110 - 210400635 tgtatggatgcatcaaacattttctttattcattcatcaggccatggacctttgg---------------------------------gttctttccactttttgactcttattaataatgctgctgtaaacacttatgtatg
i calJac3.chr1                 I 3806 C 0
s saiBol1.JH378105              64665946 107 -  72162052 tgtatgtaaacaccaaatgttttattcatccattcggcagctggtggacctctgg---------------------------------gctcttttaactttttgactcttgttaacaatgctgctcaatgta---atgtaca
i saiBol1.JH378105             C 0 C 0
s canFam3.chr2                  79146222 107 -  85426708 tgtatggacaaccc--acattttatttatgtatttatcatttggtggatatttggattg----------------------------------ttttgcttttaggctgtcgttaacaatgctattgtgaatactcatgtaca
i canFam3.chr2                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1078324 249 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2059142.000000
s hg38.chr14_GL000009v2_random     43543 315 +    201709 agttttt--------------gtgcttgcgtatgt-ttt---tatttttctggagtatatacttatgactggaatttctgtgtcatatggtaact----------tcatgcttaaccctttaaggagctgccagtttgttttccaaagtggctgcatcactttacattcccagcagcattagataagggttttaatttctttaca-tttttcctaacact--------------cttttttcttgaacaaaga-ttttatcctg-tggtgtgaagtgataccacatg-tgg---ttt------------tga-----------------------------------------tttac-------attttcctaatgactaattacattaagcatc------tattaatg--------------tgc---ttatccatctttatatc
s panTro5.chr9                  41723099 319 + 116767853 agttttt--------------gtgcttgcgtatgt-ttt---tacttttctggagcatatacttatgactggaatttctgggtcatatggtaact----------tcatgcttaaccttttaaggagctgcccgtttgttttccaaagtggctgcatcactttacattcccagcagcattagataagggttttaatttatttaca-ttttttctaatactta-------ct---cttttttcttgaacaaaga-ttttatcctg-tggtgtgaagtgataccacata-tgg---ttt------------tga-----------------------------------------tttac-------attttcctaatgactaattacattaactatc------tattaatg--------------tgc---ttatccatctttatatc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96071751 319 - 114479721 agtttct--------------gtgcttgcgtatgt-ttt---tacttttctggagcatatacttatgactggaatttctgggtcatatggtaact----------tcatgcttaaccttttaaggagctgcccgtttgttttccaaagtggctgtatcactttacattcccagcagcattagataagagttttaatttctttaca-tttttcctaacactta-------ct---cttttttcttgaacaaaga-ttttatcctg-tgatgtgaagtgatgccacatg-tgg---ttt------------tga-----------------------------------------tttac-------attttcctaatgactaattacgttaagcatc------tattaatg--------------tgc---ttatccatctttatatc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            9199 325 +     53730 agttttt--------------gtgcttgcatatgt-ttt---tgattttctggagtatatactcatgactggaatttctgggtcgtatggtaact----------tcatgcttaaccttttgaggagctgccagtttgttttccaaagtggctg-accactttacatccccagcagcattggataagggctttaatttctttaca-tttttcctaacactta---ttttct---cttttttattgaataaagg-tttcatcctg-tggtgtgaagtgatgccacatg-tgg---ttt------------tga-----------------------------------------tttac-------tttttcctaatgactaattacattaagcatc------tattaatg--------------tgcttattatccatctttatatc
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40840639 375 + 122973662 agttttt--------------gtgcttgcatgt-t-ttt---tatttttctggagtatatacttacgactggaatttctgggtcttatggtaact----------tcatgcttaaccttctgaggagctgccagtttgttttccaaagtggctgcatcactttacattcccagcagcattggataagggttttaatttc-ttaca-tttttcctaacactta-----cttt---ctcttttattgaacaaaga-ttttatcctg-tgatgtgaagtgataccacgtg-tgg---tttcacttttcctaatgactaattacatcaagcatctattaatgtgctcattatccatctttat-------atcttcctaatgactaattacatcaagcatc------tattaatg--------------tgctcattatccatctttatatc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   533989 327 - 111343173 agttttt--------------gtgcttacatatgt-ttt---tatttttctggagcatatgcttatgactcgaatttctgagtcatatggtaact----------tcttgcttaaccttttaaggagctgccagcttgttttccaaagtggccgcacccctttaccttcccagcagcattggataagggttttaatttctttgca-tttttcctaacactta---ttttct---cttttttattgaacgaagg-tttcatcctg-tggggtgaagtgataccacaagttgg---ttg------------tga-----------------------------------------tttac-------attttcctaatgactaattacattaagcatc------tattaatg--------------tgcttattatccatctttatgtc
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          376038 325 +    434444 agttttt--------------gtgcttgcatatgt-ttt---tattttcctggagcatatacttatgactggaatttctgggtcatatggtgact----------tcatgtgtaactttttggggagctaccagtttgttttccaaagtggctgcaccactttactttcccagcagcattgggtaa-ggttttaatttctctacg-tttttcctaacactta---ctttct----ttttttattgaacaaagatttttatcctg-tggtgtgaagtgataccacatg-tgg---ttt------------tga-----------------------------------------tttac-------attttcctaaagactaattacatcaagcatc------tattaatg--------------tgctcattatccatctttgtatc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          423518 325 -    438202 agttttt--------------gtgcttgcatatgt-ttt---tatttttctggagtatatacttatgactggaatttctgggtcatatggtgact----------tcatgtgtaactttttggggagctaccagtttgttttccaaagtggccgcaccactttactttcccagcagcattgggtaa-gattttaatttctctacg-tttttcctaacactta---ctttct----ttttctattgaacaaagatttttatcctg-tggtgtgaagtgataccacatg-tgg---ttt------------tga-----------------------------------------tttac-------attttcctaaagactaattacatcaagcagc------tattaatg--------------tactcattatccatctttgtatc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66472713 323 +  90373283 aatttgt--------------gtgcttgcatatgt-ttt---tatttttctggagtatatacttatgactggaatttcttggtcacatggtgact----------tcatgcttaactttttgaggagctaccagtttggtttccaaagtggctgtgccactttacattcccagcagcattggataagggttttaatttctttaca-tttttcctaacacttt---ct---c----ttttttattgtacaaagatttttgtcctg-tggtgtgaagtgctgccacatg-tgg---ttt------------tga-----------------------------------------tttac-------attttcctaaagactgattacatcaagcatc------tattaatg--------------tgctcattatccatctttgtatc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1523638 325 -   1547936 agttttt--------------gtgcttgcatatgt-ttt---tatttttctggagtatatacttatgactggaatttctgggtcatatggtgact----------tcgtgcttaaccttttgaggagctaccagtttgttttccaaagtggctgcaccactttactttcccagcagcattgggtaa-ggttttaatttctctacg-tttttcctaacactta---ctttct----ttttctattgaacaaagatttttatcctg-tggtgtgaagtgataccacatg-tgg---ttt------------tga-----------------------------------------tttac-------attttcctaaagactaactacatcaagcagc------tattaatg--------------tgctcattatccatctttgtatc
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           38577 327 +    168452 agttttt--------------gtgcttgcatatgt-ttt---tatttttctggagtatatacttatgactggaatttctggatcatatggtgact----------tcatgcttaacgttttgaggagctgccagtttgttttccaaagtggctgcaccactttacattcccagcagcactggaaaagggttttaatttctttgcattttttcctaacactta---cttcct---cttttttattgaacaaaga-tttcatcctg-tcgtgtgaagtgataccacatg-tgg---ttt------------tga-----------------------------------------tttac-------attttcctaatgactaattacattaagcatc------tattaatg--------------tgcttgttatccatctttatatc
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130404550 329 - 210400635 agttttt--------------gtgcttgtgtatat-acttagtatttttcttgagcatatacttaggactggaaattctgggtcatatggtaact----------tcaggcttaaccttttgaggagctgccagtttgttttccaaagaggctgcaccgctttacattgccaccagcattgtgtaaggattttaatttatttaca-tttttgctaatactta---tgttctct--tttttaattgaacaaaga-tttcatactc-tgatatgaagtgataccacatggtgg---ttt------------tga-----------------------------------------ttcaa-------atgtttctaatgactaattacattaagcatc------tattaatg--------------tgcttattatccatctttata--
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64666053 328 -  72162052 agttttt--------------gtgtttacgtatgt-ttt---cgtttctcttgagtatatac-tatgcctggagtttctgattcacgtggtcact----------tcatgctccaccgtttgaggagctgcacgtttgttttccaaaatggctgtatcgttctacattctcagcagcgttgtgtaagggttttaatttctccaca-ttcttggtaacacgta---ttttctat-ctttttcattgaacaaaga-tgtcatcctcacggtgtgaagtgataatatatcatgg---ttt------------taa-----------------------------------------tttac-------acttccctaattgctaattgcattaagcaac------tttttgtg--------------tgttta-taaccatctgtgtatc
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1078573 328 +   1314817 agttttt--------------gtgtttacgtatgt-ttt---cgtttctcttgagtatatac-tatgactggagtttctgattcacgtggtaact----------tcgtgcttcaccttttgaggagctgccagtttgttttccaaattggctataccattttacattcccagcagcattgtgtaagggttttaatttctccaca-ttcttggtaacacgta---ttttctat-ctttttcattgaacaaaga-tgtcatcctcacagtgtgaagtgataatacataatgg---ttt------------taa-----------------------------------------tttac-------acttccctaattactaatcacattaagcatc------tttttgtg--------------tgttta-taaccatctgtatatc
i cebCap1.NW_016107851v1       I 249 C 0
s canFam3.chr2                  79146329 382 -  85426708 agttttttttttcatgtacaagtttttgcatgaacattt---tatttctcttcggtatatacttataaatggaattgttagttcatatggtaactgtctttaacattttttttaaacctttgaggaactgccagactattttccaaactggctgcaccattttacatttttatcaccagtgtttgagggttctcatttttgctga-ttctggtcaatgtttgtcgttatctgttattttttatt--ataacta-tcctatt----gggtataaaatgacatgttgtg-ggggtattt------------tca-----------------------------------------tttgcTTCAAttttttatttaaattctggttagttaacatatcatgtaatattgatgtcaggagtagaatttagtgattactcatttaaatacc
i canFam3.chr2                 C 0 I 321
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=518041.000000
s hg38.chr14_GL000009v2_random     43858 87 +    201709 ttctttgcagatatatctattcaaaatccttgcccattttttaaaattggcttatcttgttatttattaattgcaagagttat---ttat
s panTro5.chr9                  41723418 87 + 116767853 ttctttgcagatatatctattcaaaatctttgcccattttttaaaattgggttatcttgttgtttattaattgcaagagttat---ttat
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96072070 87 - 114479721 ttctttgcagatatatctattcaaaatctttgcccatttttaaaaattgggttatcttgttgtttattaattgcaagagttat---ttat
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            9524 85 +     53730 ttctttgcaaatatatctattcaaaatctttgcccattttttaaa--ttggttatcttgttatttatgaattgcaaaggttct---ttat
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40841014 86 + 122973662 ttctttgcagatatatctattcaaaatctttgcccattttt-aaaattgagttatcttgttacttgtgaattgcaaaggttct---ttac
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   534316 86 - 111343173 ttctttgcagaaatatctattcaaaatctttgcccattttt-taaattgagttatcttgttatttacgaattgcaagcatttt---ttat
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          376363 86 +    434444 ttctttgcagatgtatatgttcaaaatctttgcccattttt-aaaattgagttatcttgttacttatgaattgcaaatgttct---ttac
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          423843 86 -    438202 ttctttgcagatgtatctgttcaaaatctttgcccattttt-taaattgagttatcttgttacttatgaattgcaaatgttct---ttac
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66473036 86 +  90373283 ttctttgcagatgtgtctattcaaagtctttacccatttta-aaaattgaattatcttgttacttatgaattgcaaaggttct---ttac
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1523963 86 -   1547936 ttctttgcagatgtatctgttcaaaatctttgcccattttt-taaattgagttatcttgttacttatgaattgcaaatgttct---ttac
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           38904 86 +    168452 ttctttgcagaaatatctattcaaaatctttgcccattttt-taaattgggttatcttgttatttatgaattgcagacattct---ttat
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130404879 85 - 210400635 -tctttgcagaaatatctattcagaatcttggtgcatttta-aaaattgggttatcatgttatttatgaattgcaagggttct---ttat
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64666381 88 -  72162052 ttctttgcagagatatttattcaaattctttgcccatttt--ttaattggcttacctcgttatttctgaattataaggtttttaaaatat
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1078901 85 +   1314817 ttctttgcagagatgtttattcaaattctttgcccatttt--ttaattggcttaccttgttatttctgaattataaggttttt---ttat
i cebCap1.NW_016107851v1       C 0 I 22
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79146711 321 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=87241.000000
s hg38.chr14_GL000009v2_random     43945 22 +    201709 atttcctatatatgtaagtccc-
s panTro5.chr9                  41723505 22 + 116767853 atttcctatatatgtaagtccc-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96072157 22 - 114479721 atttcctatatatgtaagtcct-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            9609 22 +     53730 atatcctacatatgtaagtccc-
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40841100 22 + 122973662 ttatcctatatatgcaagtcgc-
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   534402 22 - 111343173 atatcctatatatgtaagtccc-
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          376449 22 +    434444 atgtcttatatatgtaagtcac-
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          423929 22 -    438202 gtgtcttatatatgtaagtcac-
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66473122 22 +  90373283 atgtcctatatacataagtcac-
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1524049 22 -   1547936 gtgtcttatatatgtaagtcac-
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           38990 22 +    168452 atgtcctacatgtgtaagtccc-
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130404964 21 - 210400635 atatcctagat--gtaagtcccc
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64666469 20 -  72162052 atatcctagata-atgagt--ct
i saiBol1.JH378105             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79146711 321 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1078986 22 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1384317.000000
s hg38.chr14_GL000009v2_random     43967 212 +    201709 ttatcagatacacgcttttcaaatactttcttctacttggcgtcttaccttttcactt-cttcatgctgtcttctgaggcacagcagttttcaattttgaagtccattgaatccatttttcctttggagtcatagctaagaaaacactggcaaatgcagtcacaaagatttatg---ccagt-gttttcttctgagggttttatagttttagctttt
s panTro5.chr9                  41723527 212 + 116767853 ttatcagatatacgcttttcaaatactttcttctacttggcatcttactttttcactt-cttggtgctgtcttcccaggcacagcagttttcaatattgaagtccattgaatccatttttcctttggagtcatagctaagaaaacactgccaaatgcggtcacaaagatttatg---ccagt-gttttcttctgggggttttatagttttagctgtt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96072179 212 - 114479721 ttatcagatatacgcttttcaaatactttcttctacttggcgtcttaccttttcactt-cttgatactgtcttctcaggcacagcagttttcaattttgaagtccattgaatgcatttttcctttggagtcatagctaagaaaacactgccaaatgcagtcacaaagatttatg---ccact-gttttcttctgagggttttatagttttagctgtt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            9631 187 +     53730 ttatcagatacatgcttttcaaatactttcttctagtcagtatcttaccttttcactt-cttgatactgtcttctcaagcacagcagttttcaattttgaagttcattgaatccatttttcctttggagtcatagctaagaaaacactgccaaatgcagtcacaaagatttatg---ccagg-gttttcttc-------------------------
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40841122 212 + 122973662 ttatcagatatatgctcttcaaatactttcttctacttagtgtcttgccttttcactt-cttgatactgtcttctcaggcacagcagttttcaattttgaagtccattgaatccatttttcctttggagtcctacctaagaaaacactgccaaatgcagtcacaaagatttata---ccagg-gttttcttctgagagttttatagttttagctgtt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   534424 212 - 111343173 ttatcagatatatgcttttcaaatactttcttctactcagtgtcttacgttttcactt-cttgatactatcttctcaggcatagcggttttcaattttgaagtccattgaatccatttttcctttggagtcatagctaagaaaacactgccaaatgcagtcacaaagattaata---tcaat-attttcttctgagagttttatagttttagctgtt
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          376471 212 +    434444 ttatcagccatatgcttttcaaatactttcttctacttagtgtcttgccttttcactt-cttgatactgtcttctcaggcacagcagttttcaattttgaagttcattgaatccatttttcctttggagtcatagctaagaaaacactgccaaatgcagtcacaaagatttatg---ccagt-gttttcttctgagggttttatagttttcgctgtt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          423951 212 -    438202 ttatcagccatatgcttttcaaatactttcttctacttagtgtcttgccttttcactt-cttgatactgtcttctcaggcacagcagttttcaattttgaagttcattgaatccatttttcctttggagtcatagctaagaaaacactacgaaatgcagtcacaaagatttatg---ccagt-gttttcttctgagggttttatagttttcactgtt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66473144 212 +  90373283 ttatcagatacatgcttttcaaatactttcttttacttagtgtcttgccttttcaatt-cttgatactgtcttcgcaggcacagcagttttcaattttgaagttcattgaatccatttttcctttggagtcatagctaagaaaacactgcgaaatgcagtcacaaagatttatg---ccagt-gttttcttctgagggttttatagttttcgctgtt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1524071 212 -   1547936 ttatcagccatatgcttttcaaatactttcttctacttagtgtcttgccttttcactt-cttggtactgtcttctcaggcacagcagttttcaattttgaagttcattgaatccatttttcctttggagtcatagctaagaaaacactgccaaatgcagtcacagagatttatg---ccagt-gtttccttctgagggttttatagttttcgctgtt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           39012 212 +    168452 ttatcagatatacgcttctcaaatactttcttctactcagtgtcttaccttttcactt-cttggtactgtcttctcaggcacagcagttttcaattttgaagtccaatgaatccatttttcctttggagtcatagctaagaaaacactgcgaaatgcagtcacagagatttatg---ccagg-gttttcttctgagggttttatagttttagctgtt
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130404985 217 - 210400635 ttatcagatacaggcttttcaaatattttcttctactcagtggcttgccttttcaccttcttgatactgtcttctcaggcatggcagttttcaactttgaagtccattgaatccatttttcctttggagtcatagctaagaaatcactgccaaatgcagtcacaaagatttatttactctaatgttttcttctgagagttttatagttttagcagtt
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64666489 186 -  72162052 ttatcagatatacacttttcaaatgtttgcttctgctcagtgg----------------cttgagaccatcttttcatgaacaacagttttcagttttgaagtctattgaatccatgtct---------tcatagctaagaaaacagtgccaaatgcagccacgaaaatgcatg---tcaaa---tttttcctgagagttttatagttttagctctt
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1079008 202 +   1314817 ttgtcagatctatgcttttcagatatttgcttctactcagtggcttgccttttcactttcttgaggccatcttttcatgaacaacagtttgcagttttgaagtccattgaatccatttct---------tcatagctaagaaaacacaaccaaatgcagccacaaaaatttatg---tcaat---ttttttctgagagttttatagttttagctctt
i cebCap1.NW_016107851v1       I 22 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79146711 321 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1095203.000000
s hg38.chr14_GL000009v2_random     44179 205 +    201709 acagttaactgttttatttt-gagttaattattaaatatga-------tatttgg------tcgaactttattta---ttttttgcttatggatacccagttgtcccagcac----catttgttgaaaagactattcttttcccattttgttcttttg---ttaagcttgtataaaatcaattgactgtaaaagtgcaggcttatttt-tagattgtcaattctta---gctt
s panTro5.chr9                  41723739 201 + 116767853 agagttaactgttttatttt-gaattaatttttaaataaga-------tatTTGG------TCAAACTTtattt-------tttgcatatggatacccagttgtcccagcac----catttgttgaaaagactgttcttttcccattttgttcttttg---ttaagcttttataaaatcaattgactgtaaatgtgcaggcttatttt-taggttatcaattctta---gctt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96072391 205 - 114479721 acagttaactgttttattttggagttaatttctaaataaga-------tatTTGG------TCAAattttattta---tt-tttgcatatggatacccagttgtcccagcac----catttgttgaaaagactattcttttcccattttgttattttg---ttaagcttgtataaaagccattgactgtaaatatgcaggtttatttt-tagattatcagttctta---gctt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            9818 158 +     53730 ----ttactttatttatttt-------------------------------------------------------------tttgcatgtggatatccagttgtcgcagcac----catttgttgaaaagactattcttttcccattctgttcttttg---ttaaccttgtataaaatcaattgactgtaaatgtgcaggtttattttgtagattatcaattctta---gttt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40841334 205 + 122973662 acagttaactgttttatttt-gagttaatttttaaataaga-------tatTTGG------TCCAAatttattta---ttttttgcatatggatacccagttgtcccagcac----catttgttgaaaagactattcttttcccgttttgttcttttg---ttaaccttatataaaatcaattgtctgtaaatgtgcaggtttatttt-tagattatcaattctta---gttt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   534636 211 - 111343173 acagttaactgttttatttt-gggttaatttttaaatatgg-------tatttggtgagaatccaactttatatata-tatttttcacatgcatacccagttgttccaacac----catttgttga--aaactattcttttcccattctatttttttg---ttaaccttgtataaaatcagttgactgtaaatgtgcaagtttatttt-tagattatcaattctta---gctt
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          376683 206 +    434444 acagttaactgttttatttt-gagttaatttttaaataaga-------tatttgg------tccaaatttatttat--ttttttgcatgtggatacccagttgttccagcac----catttgttgaagagactattcttttcccattttgttcttttg---ttaaccttatatgaaatcaattgactgtaaatgtgcaggtttatttt-tagatcatcaactctta---gttt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          424163 206 -    438202 acagttaactgttttatttt-gagttaatttttaaataaga-------tatttgg------tacaaatttatttat--ttatttgcatgtggatacccagttgttccagcac----catttgttgaaaagactattcttttcccattttgttcctttg---ttaaccttatatgaaatcaattgactgtaaatgtgcaggtttatttt-tagatcatcaactctta---gttt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66473356 205 +  90373283 acagttaactgttttatttt-gagttaatttttaaacaaga-------tattttg------tccaaatttatttat--ttttttgcatatggatacccagttgttccagcac----catttgttgaaaaggctattcttttcccattttgttattttg---ttaaccttatataaaatcaattgactgtaaatgtgcagg-ttatttt-tagatcatcaacactta---gttt
i chlSab2.chr2                 C 0 I 317
s manLeu1.NW_012105442v1         1524283 206 -   1547936 acagttaactgttttatttt-gagttaatttttaagtaaga-------tatttgg------tccagatttatttat--ttttttgcatgtggatacccagttgttccagcac----catttgttgaaaagactattcttttcccattttgttcctttg---ttaaccttatatgaaatccattgactgtaaatgtgcaggtttatttt-tagatcatcaactctta---gttt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           39224 200 +    168452 agagtgaactg-----tttt-gagttaatttttaaataaga-------tatgtgg------tccagctttattta---ttttttgcatatagatacccagttttcccagcac----catttgttgaaaagactattctttttccattctgttcttttg---ttaaccttgtataaaatcagttgactgtaaatgtgcaggtttatttt-tagattatcaactctta---gctt
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130405202 194 - 210400635 acagttaactgatgtatttt-gagttaatttttaaatataa-------tatttgatgagagtccaacctact--------ttttgcatatagatgccgagttgtccaagcac----catttgttggaaagacaattc--------tttagttcttttg---ttaaccttgtataaaatcaattgactgtaaatgtgcaggtttaattt-tagatgatcaattc-------ttt
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64666675 204 -  72162052 atatttagctgttttgtttt-gagttaatttttagata--------------tggtaagagtccaactttat------tcttttgcatatgaatatccagttgtcccagcat----cgttttttgaaaagactattttccccccatttaactgttttg---ttaaccttgagaaaaatcaattaactgtaaatgtacaggtttaaatt-tagattctcaattctaatatgttt
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1079210 204 +   1314817 acatttagctgttttgtttt-gagttaatttttagata--------------tggtaagagtccaactttat------tcttttgaatatgaatatccagttgtcccagcat----cgtttgttgaaaagactatttttcccccatttaattgttttg---ttaaccttgagaaaaatcaattaactgtaaatgtacaggtttaaatt-tagattctcaattctaatatgttt
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79147032 181 -  85426708 atgttcatctgttttttttt---ttttaattccacatatgagtgaaattatatgg--------------tatttgtctttctctg---------acttatttcacttagcataatacacttgttgag---------tttcatctaTCttgtggttttaatttgcatttttcttagaattggtcatgttgagtatcgcatctttacatg-t-ggtcatt---------------
i canFam3.chr2                 I 321 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=563522.000000
s hg38.chr14_GL000009v2_random     44384  99 +    201709 gtttatgtctat-tc-ttatgtcaAGGCCCAATCGAATTGAATGAGAAGTTTT-TTT-CAATCATG-TTGCATATTACCAGTTGT-CTTATGTCATAATAAAAA-T
s panTro5.chr9                  41723940  99 + 116767853 gtttatgtctat-tc-ttatgtcaaggccaAATCAAATTGAATGAGAAGTTTT-TTT-CAATCATG-TTGCATATTACCAGTTGT-CTTATGTCATAATAAAAA-T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96072596  99 - 114479721 gtttatgtctat-tc-ttatgtcaAGGCCCAATCGAATTGAATGAGAAGATTT-TTT-CAATCATG-TTGCATATTACCAGTTGT-CTTATGTCATAATAAAAA-T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1            9976  99 +     53730 gtttatatctat-ta-ttatgccaaggccaaattgAATTTAATGAGAAGTTTT-TTT-CAAGCATG-TTGCATATTACCAGTTGT-CTTATATCATAATAAAAA-T
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40841539  98 + 122973662 gtttatgtctat-tc-ttatgccaaggccaAAATGAATTTACTGAGAAG-TTT-TTT-CAATCATG-TTGCATATTATCAGTTGT-CTTATGTCATAATAAAAA-T
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   534847 100 - 111343173 gtttatgtctat-tc-ttaaaccaggaccaAATCGAATTTAATGAGAAGATTT-TTTCCAAGCATG-TTGCATGTTACCAGTTGT-CTTATATCATAATAAAAG-T
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          376889  98 +    434444 gtttatgtctat-tc-ttatgccaAGGTCAAATTGAATTTACTGAGAAGTTTC-TTT--AATCATG-TTGCATATTACCAGTTGT-CTTATGTCATAATAAAAA-T
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          424369  98 -    438202 gtttatgtctgt-tc-ttatgccaAGGTCAAATTGAATTTACTGAGAAGTTTC-TTT--AATCATG-TTGCATATTACCAGTTGT-CTTATGTCATAATAAAAA-T
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66473878  99 +  90373283 gtttatgtctat-tc-ttatgccaAGGTCAAATTGAATTTACTGAGAAGTTTT-TTA--AATCATGTTTGCATATTACCAGTTGT-CTTATGTCATAATAAAAA-T
i chlSab2.chr2                 I 317 C 0
s manLeu1.NW_012105442v1         1524489  98 -   1547936 gtttatgtctgt-tc-ttatgccaAGGTCAAATTGAATTTACTGAGAAGTTTC-TTG--AATCATG-TTGCATATTACCAGTTGT-CTTATGTCATAATAAAAA-T
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           39424  99 +    168452 gtttatgtctat-tc-ttatgccaaggccaAATCAAATTTAATGAGGAGTTTT-TTT-CCATCATA-TTGCATATTACCAGATGT-CTTATGTCATAATAAAAA-A
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130405396  83 - 210400635 gtttatgtctat-tc-ttatgccagAGACAAATCAAATTTAATGAGAAGGTTTCTTT-CAGTCATA-T------------------CTTATGTCATAATAAAAAT-
i calJac3.chr1                 C 0 I 677
s saiBol1.JH378105              64666879  99 -  72162052 atctatgtttat-tc-ttatgccaggaccaAATCAAATTTAATTAGAAGGTGT-TTT-CAGTCATG-TTGCGTATTACCAGTTGTCTTAACGTCATCATAAAAC--
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1079414  99 +   1314817 atctatgcttat-tctttatgccagGCCCAAATCAAATTTAATTAGAAGGTGT-TTT-CAGTCATG-TTGCGTATTACCATTTGT-CTGACGTCATGATAAAAC--
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79147213  84 -  85426708 attcatttctatatc-ttccttaaagaactaatca--------------tttc-ttt-tgcccat--ttttatattg--gattgttttttcattattgtaagag-t
i canFam3.chr2                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=13643.000000
s hg38.chr14_GL000009v2_random     44483 2 +    201709 TA
s panTro5.chr9                  41724039 2 + 116767853 TA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96072695 2 - 114479721 TA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           10075 2 +     53730 TA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40841637 2 + 122973662 TA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   534947 2 - 111343173 TA
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          376987 2 +    434444 TA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          424467 2 -    438202 TA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66473977 2 +  90373283 TA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1524587 2 -   1547936 TA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           39523 2 +    168452 TA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64666978 2 -  72162052 TG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1079513 2 +   1314817 TG
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79147297 2 -  85426708 ta
i canFam3.chr2                 C 0 C 0
e calJac3.chr1                 130405479 677 - 210400635 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=932968.000000
s hg38.chr14_GL000009v2_random     44485 157 +    201709 AATTTAGTGGAATGTCTGTAACT--TCACCTTTTGTGTCACAAAGGAGTCTC-----------TGGCCAGCTTATACCTT-ACTTCCTCTAAGACATGATCAGACGCCAGGCTTACAAGACACACTTAA-TTTC-------------TTTTTTTCTCCATTC----AAGCCTT-TAGTCTCTTTTCCATT
s panTro5.chr9                  41724041 157 + 116767853 AATTTAGTGGAATATCTGTAACT--TCACCTTTTGTGTCACAAAGGAGTCTC-----------TTGCCAGCTTATACCTT-ACTTCCTCTAAGACATGGTCAGAAGCCAGGCTTACAAGACACATTTAA-TTTC-------------TTTTTTTCTCCATTC----AAACCTT-TAGTCTCTTTTCCATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96072697 156 - 114479721 AATTTAGTGGAATATCTGTAACT--TCACCTTTTGTGTCACAAAGGAGTCTC-----------TTGCCAGCTTATACCTT-ACTTCCTCTAAGACATGGTCAGAAGCCAGGCTTACAAGACACATTTAA-TTTC--------------TTTTTTCTCCATTC----AAACCTT-TAGTCTCTTTTCCATT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           10077 153 +     53730 AATTTAGTGGAATATCTTTAACG--TCACCTTTTGTGCCTCAAAGGAATCTC-----------TGGCCAGCTTATACCTT-ACTTACTCTAAGACATGATGGCAAGTCAGGCTTACAAGACACTC-----TTTC-------------TTTTTTTCTCTATTC----AAACCTT-TAGTCTCTTTTCCATT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40841639 152 + 122973662 AATTTAGTGGAATATCTTTAACT--TCACCTTTTCTGTCGCAAAGGAGTCTC-----------TGGCCAGCTTATACCTT-GCTTACTCTAAGATATGATGGGAAGCCAGGTCTACAAGACACAC-----TTTC--------------TTTTTTCTCCATTC----AAACCTT-TAGTCTCTTTTCCATT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   534949 154 - 111343173 AATGTAGTGGAATATTT---ACT--TCACCTTTTGTGTCTTAAAGAAGTCTG-----------TGGCCAGCTTATACCTT-ACTTACTCTAAGACATGATGGCAAGTCAGGCTTACAAGACACACTTTA-TTTC-------------TTTTTTTCTTCATTC----AAACCTT-CAGTCTCTTATCCAGT
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          376989 157 +    434444 AATTTAGTGGAATATCTTTAACT--TCACCTTTTGTGTCTCAGAGGAGTCTC-----------TGGACAGCTTATACCTT-ACTTACTCCAAGATTTGATGGGAAGCCAGGCCTACAAGACATACTTTA-TTTC-------------TTTTTTTCTCCATTC----AAATCTG-TAGTATCTTTTCCATT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          424469 157 -    438202 AATTTAGTGGAATATCTTTAACT--TCACCTTTTGTGTCTCAGAGGAGTCTC-----------TGGCCAGCTTATACCTT-ACTTACTCTAAGATGTGATGGGAAGCCAAGCCTACAAGACATACTTTA-TTTC-------------TTTTTTTCTCCATTC----AAATCTG-TAGTATCTTTTCCATT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66473979 157 +  90373283 AATTTAGTGGGATATCTTTAACT--TCACCGTTTGTGTCTCAGAGGAGTCTC-----------TGGCCAGCTTATACCTT-ACTTACTCTAAGATGTGATGGGAAGCCAGGCCTACAAGAAATCCTTTA-TTTC-------------TTTTTTTCTCCTTTC----AAACCTG-TAGTGTCTTTTCCATT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1524589 157 -   1547936 AATTTAGTGGAATATCTTTAACT--TCACCTTTTGTGTCTCAGAGGAGTCTC-----------TGGCCAGCTTATACCTT-ACTTACTCTAAGATGTGATGGGAAGCCAGGCCTACAAGATATACTTTA-TTTC-------------TTTTTTTCTCCATTC----AAATCTG-TAGTATCTTTTCCATT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           39525 158 +    168452 AATTTAGTGGAATATCTTTAACT--TCACCTTTTGTGTCTCAAAGATGTCTC-----------TGGCCAGTTTATACCTT-ACTTACTCTAAGACATGATGGGAAGTCAGGCTTATAAGACACACTTGA-TTTC-------------TTTTTTTCTGCATTC----CAACCTTCTAGTCTCTTTTCCATT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130406156 153 - 210400635 aatgTAGTGGAATGTCTTTAACT--TCACCTTTTGTGTCGCAAAGGAGTCTG-----------TGGCCAGATTATACCTT-----ACACTAAGACATGGTGGGAAGTCAGGCTCACAAGACACAGTTTATTTTG-------------TTTTTTTCTCCATTT----AAAGGT--TTAGTTTTTCTCCACT
i calJac3.chr1                 I 677 I 11
s saiBol1.JH378105              64666980 156 -  72162052 GATGTAGTGGAGCATCTTTAACC--TCACCTTTTGTGTCTCAAAGAAGTCTG-----------TGGCCAGCTCATACCTT-ACTGACTCTGAGACATAATGGGAAGTCAGGCTTACAAGACACAGTTCA-TTTA-------------TATTTTTCTCCATTC----AAACTT--TAATCTCTTATCCAAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1079515 154 +   1314817 GATGTAGTGGAACATCTTTAACC--TCACCTTTTGGGTCTCAAAGGAGTC-------------TGGCCAGCTCATACCTT-ACTGACTCTGAGACGTAATGGGAAGTCAGGCTTACAAGACACAGTTCA-TCTA-------------TATTTTTCCCCATTC----AAACTT--TAGTCTCTTATCCAAT
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79147299 170 -  85426708 --tttat----atat-tctaactacttatcccttatcagatataggattttcaaatattttattcgttaccttgccttttcactttttcttg---atggttacatttaaagcataaaag----ttttta-tttaaaaaaaaaaggttttattttttaaattttgagaaatatt-taatctgtttct----
i canFam3.chr2                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=47424.000000
s hg38.chr14_GL000009v2_random     44642 7 +    201709 GCCTCCC
s panTro5.chr9                  41724198 7 + 116767853 GCCTCCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96072853 7 - 114479721 GCCTCCC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           10230 7 +     53730 GCCTCCC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40841791 7 + 122973662 GCCTCCC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   535103 7 - 111343173 GCCTCCC
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          377146 7 +    434444 GCCTCCT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          424626 7 -    438202 GCCTCCT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66474136 7 +  90373283 GCCTCCT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1524746 7 -   1547936 GCCTCCT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           39683 7 +    168452 GCCTCAC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64667136 7 -  72162052 GCCTCCC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1079669 7 +   1314817 GCTTCCC
i cebCap1.NW_016107851v1       C 0 I 426
s canFam3.chr2                  79147469 7 -  85426708 gtctttt
i canFam3.chr2                 C 0 C 0
e calJac3.chr1                 130406309 11 - 210400635 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=246847.000000
s hg38.chr14_GL000009v2_random     44649 61 +    201709 ACTATAGTTATATTTTCAGAAAGTTTTGGTTACAGGATCTGCTGA-C------ATAGTCTAATATTCA
s panTro5.chr9                  41724205 61 + 116767853 ACTATAGTTATATTTTCAGTAAGTTTTGGTCACAGGATCTGCTGA-C------ATAGTCTAATATTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96072860 61 - 114479721 ACTATAGTTATATTTTCAGTAAGTTTTGGTCACAGGATCTGCTGA-C------ATAGTCTAATATTTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           10237 60 +     53730 TCTATAGTTAT-TTTTCAGTAAGTTTTCATCACAGGATCTGCTGA-T------GTAGTCTAATATTTA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40841798 61 + 122973662 ACTATAGTTTTATTTTCAGTAAGTTTTGGTCACAGGATCTGCTGA-C------ATAGTCTAATATTTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   535110 61 - 111343173 TCTATAGTTTCATTTTCAGTAAATTTTGGTCACAGGATCTGCTGA-C------ATAGTCTACTATTTA
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          377153 61 +    434444 GCTGTCATTTTATTTTCATTAAGTTTTGGTCACAGGATCTGCTGA-C------ATAGTCTAATATTTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          424633 61 -    438202 GCTGTCATTTTATTTTCATTAAGTTTTGGTCACAGGATCTGCTGA-C------ATAGTCTAATATTTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66474143 61 +  90373283 GCTGTCGTTTTATTTTCATTAAGTTTTGGTCACAGGATCTGCTGA-C------ATAGTCTAATATTTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1524753 61 -   1547936 GCTGTCATTTTATTTTCATTAAGTTTCGGTCACAGGATCTGCTGA-C------ATAGTCTAATATTTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           39690 61 +    168452 TCTATAGTGATATTTGCGGAAAGTTTTGATCACAGGATCGGCTGA-C------ATAGTCTAATATTTA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64667143 62 -  72162052 TCTTTAGACACATTTTCTTCAAATTCTGGATGCATTTTCTTCAAATC------TTGATCTGCCATTTA
i saiBol1.JH378105             C 0 I 302
s canFam3.chr2                  79147476 58 -  85426708 -----gatgccatatttaagaaact---gttgccaaatccaatca-caaacatacacacctatattt-
i canFam3.chr2                 C 0 C 0
e calJac3.chr1                 130406309 11 - 210400635 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1079676 426 +   1314817 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2208999.000000
s hg38.chr14_GL000009v2_random     44710 379 +    201709 GTGCATTATGTTTTA-----CTAACTCATTATAATTCATA-GAACCTTCCATAGATGTT------------------------------------------------------TACCATCTAGGAAGGAGAAGTTTAAGTCTGAGCCA-C-------CAGCTTTCCTCAGTGGAAATCAAG----TGAAGTCATCATCTTG-CAGTTTAC----AGACCCTCTTTCCTCCTGGTAGCTGGTTCTCTTGGGT--AGCAC--TGTGGCTAATCCTTTTATTAGTGCAGATCTTGCATTCTCAGAAACCACAGTTCCCTATATTGACCTCCTTTTACTGAAACAGAG----ATGCACAGCTCTGCTTTCTAGCTCAGTAGAGGATTCTTGGAATAAAACGTTTAACTCATTCCAAGAAAAAGTCTTAGGAGTGCAGCACTTCAAAATCAGGTAACGTTCAGGCAATT
s panTro5.chr9                  41724266 379 + 116767853 GTGTATTATGTTTTA-----CTTACTCATTATAATTTATA-GAACCTTCCATAGATGTT------------------------------------------------------TACCATCTAGGAAGGAGAAGTTTAAGTCTGAGCCA-C-------CAGCTTTCCTCAGTGAAAATCAAG----TGAAGTCATCATCTTG-CAGTTTAC----AGACCCTCTTTCCATCTGGCAGCTGGTTCTCTTGGGT--AGCAC--CGTGGCTAATCCTTTTCTTGGTGCAGATCTTGCATTCTCAGAAACCACAGTTCCCTGTATTGATCTCCTTTTACTGAAACAGAG----ATGCACAGCTCTGCTTTCTAGCTCAGTAGAGGATTCTTAGAATAAAACGTTTAACTCATTCCAAGAAAAAGTCTTAGGAGTGCAGCACTTCAAAATCAGGTAACGTTCAGGCAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96072921 379 - 114479721 GTGTATTATGTTTTA-----CTTACTCATTATAATTTATA-GAACCTTCCATAGATGTT------------------------------------------------------TACCATCTAGAAAGGAGAAGTTTAAGTCTGAGCCA-C-------CAGCTTTCCTCAGTGGAAATCAAG----TGAAGTCATCATCTTG-CAGTTTAC----AGACCCTCTTTCCATCTGGCAGCTGGTTCTCTTGGGT--AGCAC--CGTGGCTAATCCTTTTCTTGGTGCAGATCTTGCATTCTCAGAAACCACAGTTCCCTGTATTGATCTCCTTTTACTGAAACAGAG----ATGCACAGCTCTGCTTTCTAGCTCAGTAGAGGATTCTTAGAATAAAACGTTTAACTCATTCCAAGAAAAAGTCTTAGGAGTGCAGCACTTCAAAATCAGGTAACGTTCAGGCAATT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           10297 371 +     53730 GTGCCTTATGTTTTG-----CTAACTCA-TATAATTCATA-GAATCTTCCATAGATGTT------------------------------------------------------TACCATCCAGGAAGGAG------AAGTCTGAGCTG-C-------CAGCTTTCCTCAGTGGAAATCATG----TGAAGTCATCATGTTG-TAGTTCGC----AGATCCTCTTTCCACCTGGTAGCTGGTTCTCTTGGGT--AGCAC--TGCATCTAATCCTTTACTTGGTGCAGATCTTGCATTCTCAGAAACCACAGTT-CCTGTATTGACCTCCTTTTACTGAAACAGAG----ATGCACAGCTCTGCTTTCTAGCTCAGTAGAGGATTCTTGGGATATAAAGTTTAACTCATTCCAAGAAAAAGTCTTAGGAGTGCAGCACTTCAAAATCAGGTAATGTTCAGGCAATT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40841859 379 + 122973662 GTGCATTATGTTTTG-----CTAACTCATTATAATTCATA-GAATCTTCCATAGATGTT------------------------------------------------------TACCATCCAGGAAGGAGAAGTTTAAGTCTCAGCTG-C-------CAGCTTTCCTCAGTGGAAATCAAG----TGAAGTCATCATCTTG-CAGTTCTC----AGATCCTCTTTCCACCTAGCAGCTGGTTCTCTTGGGT--AGCAC--TGTGGCTAATCCTTTTCTTGGTGCAGATCTTGCATTCTCAGAAACCACAGTTCCCTGTATTGACCTCCTTTTACTGAAACAGAG----ATGCACAGCTCTGCTTTCTAGCTCAGTAGAGGATTCTTGGAATATAAAGTTTAACTCATTCCAAGAAAGCGTCTTAGGATTGCAGCACTTCAAAATCAGGTAATGTTCAGGCAATT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   535171 379 - 111343173 GTGCATTATGTTTTG-----CTAACTCATTATAATTCATA-GAATCATCCACAGATGTT------------------------------------------------------TACCATCCAGGAAGGAGAAGTTTAAGTCTGAGCTG-C-------CAGCTTTCCTCAGTGGAAACCAAG----TGAAGTCATCATCTTC-CAGTTCGC----AGATCCTCTTGCCATGTGGTAGCTGGTTCTCTTGAGT--AGCAC--TGTGGCTAATCCTTTTTTTGGTGCAGATCTTGCATTCTCAGAAACCACAGTTTCCTGCATAAACCTCCTTTTCCTGAAACAGAG----ATGCACAGCTCTGCTTTCCAGCTCAGTGGACGATTCTTGGAATAAAAAGTTTAGCTCATTCCAAGAAAAAGTTTTAGGAGTGCAGCAGTTAAAAATCAGGTAATGTTCAGGCAATT
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          377214 381 +    434444 GTGCATTATGTTTTG-----CTAACTCATTATAATTCATA-GAATCTCCCATAGATATT------------------------------------------------------TACCATCCAGGAAGGAGAAGTTTAAGTCTGGGCCA-G-------CAGCTTTCCTCAGTGGAAATCAAG----TGAAGTCATCATCTTT-CAGTTTGC----AGATCCTCTTTCCACCCGGTAGCTAGTTCTCTTGTGT--AGCACTGTGTGGCTAATCCTTTTCTTGGTGCAGATCTTGCATTCTCAGAAACCACAGCTCCCTGTGGAGAGCTCCTTTTACTGAAACAGAG----ATGCACAGCTCTGCTTTCTAGCTCAGTAGAGGATTCTTAGAATATCAAGTTTAACTCATTCCAAGAAAGAGTCTTAGGAGTGCAGCACTTAAAAATCAGGTAATGTTCAGGCAATT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          424694 388 -    438202 GTGCATTATGTTTTG-----CTAACTCATTATAATTCATA-GAATCTTCCATAGATATT------------------------------------------------------TACCATCCAGGAAGGAGAAGTTTAAGTCTGGGCCA-CCTTTCCTCAGCTTTCCTCAGTGGAAATCAAG----TGAAGTCATCATCTTT-CAGTTTGC----AGATCCTCTTTCCACCTGGTAGCTAGTTCTCTTGTGT--AGCACTGTGTGGCTAATCCTTTTCTTGGTGCAGATCTTGCATTCTCAGAAACCACAGCTCCCTGTGTAGAGCTCCTTTTACCGAAACAGAG----ATGCACAGCTCTGCTTTCTAGCTCAGTAGACGATTCTTAGAATATAAAGTTTAACTCATTCCAAGAAAAAGTCTTAGGAGTGCAGCACTTAAAAATCAGGTAATGTTCAGACAATT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66474204 375 +  90373283 GTGCATTATGTTTTG-----CTAACTCATTATAATTCATA-GAATCTTCCATAGATGTT------------------------------------------------------TACCATCCAGGAAGCAGAAGTTTAAGTCTGAGCCG-C-------CAGCTTTCCTCAATGGAAATCAAG----TGAAGTCATCATCTTT-CAGTTCGC----AGATCCTCTTTCCACCTGGTAGCTGGTTCTCTTGTGT--AGCACTGTGTGGCTAATCCTTTTCTTGGTGCAGATCTTGCATTCTCAGAAACTACAGTTCCCTGTGTTGAGCTCCTTTCACTGAAACAGAG----ATGCACAGGTCTGCTTTCTAGTTCAGTAGAGGATTCTTGGAATATGAAGTTTAACTCATTCCAAGAAAA------AGGAGTGCAGCACTTAAAAATCAGGTAATGTTCAGGCAATT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1524814 388 -   1547936 GTGCATTATGTTTTG-----CTAACTCATTATAATTCATA-GAATCTTCCATAGATATT------------------------------------------------------TACCATCCAGGAAGGAGAAGTTTCAGTCTGGGCCA-CCTTTCCTCAGCTTTCCTCAGTGGAAATCAAG----TGAAGTCATCATCTTT-CAGTTTGC----AGATCCTCTTTCCACCTGGTAGCTAGTTCTCTTGTGT--AGCACTGTGTGGCTAATCCTTTTCTTGGTGCAGATCTTGCATTCTCAGAAACCACAGCTCCCTGTGTAGAGCTCCTTTTACTGAAACAGAG----ATGCACAGCTCTGCTTTCTAGCTCAGTAGAGGATTCTTAGAATATAAAGTTTAACTCATTCCAAGAAAAAGTCTTAGGAGTGCAGCACTTAAAAATCAGGTAATGTTCAGACAATT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           39751 371 +    168452 GTGCATCATGTTTTG-----CTAATTCATTGTACTTCATG-GAATCTTCCATAGATGTC------------------------------------------------------TACCA-CCAGGAAGGAGAAGTTTAAGTCTGAGTTG-C-------CAGCTTTCCTCAGTGGAAATCAAG----TGAAGTCATCATCTTT-CAGTTCTC----AGATCCTCTTTCCACCTG-------GTTCTCTTGGGT--TGCAC--TGTGGCTAATACTTTTCTTGGTGCCAATCTTGCATTTTCAGAAACCACAGTTCCCTGTATTGACTTCCTTTTACTGAAACAGAG----ATGCACAGCTCTGCTTTCTAGCTCAGTAGATGATTCTTGGAATATAAAGTTTAATTCATTCCAAGAAAAAGTCTTAGGAGTGCAGCACTTCAAAATCAGGTAATGTTCAGGCAATT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64667507 332 -  72162052 GTGCATTATGTTTTA-----TTAACTCCTTATAATGTACA-GAATCACTCATAAATGTT------------------------------------------------------CACCTTCTATGAAGGAGGAGTTTAAGTCTGGGCTGTT-------CAGGTTATCTCAGTGGAAACCAAG----TTAAGTCATCA------------------------TTTTTCCACCTGGTAGCTGGTTT-----------ACAC--TGGGGCTGATCCTTTCCTTGGTGTAATTTCTGCATTCTCAGAAACC--------------------TTTTATTTTTAAACAGAG----ATGCCCAGATCTGCTTTCTAGCTCAATACAAGATTCTTGGAGTACAAAATTTAACTCATGCCAAGAGAAATTTTTAGGAGTAGAGCACTTAAAAACCAAATAATGTTCAGGCAATT
i saiBol1.JH378105             I 302 C 0
s cebCap1.NW_016107851v1         1080102 369 +   1314817 GTGTATTATGTTTTA-----TTAACTCCTTATAATGTATA-GAATCACTCACAAATGTT------------------------------------------------------CACCTTCTAGGAAGGAGAAGTTTAGGTCT-GGCTG-T-------CAGGTTATCTCAGTGGAAATCAAG----TTAAGTCATCATCTTT-CAGTTCGC----AAATCCTCTTTCCACCTGGTAGCTGGTTT-----------ACAC--TGGGGCTGATCCTTTCCTTGGTGTAATTCCTGCATTCTCAGAAACCACAGTTCCCTGTATTGACGTCCTTTTATTTAAACAGAG----ATGCCCAGATCTGCTTTCTAGCTCAATACAAGATTCTTGGAATACAAAATTTAACTCATGCCAAGAGAAATTTTTAGGAGTGCAGCACTTAAAAATCAAATAATGTTCAGGCAATT
i cebCap1.NW_016107851v1       I 426 C 0
s canFam3.chr2                  79147534 431 -  85426708 ---ttttctgttttataattctagctcttaatatttcgtgttaattttgtatatatgttatgaggtagaggtctgattttattactttgtgtgtggatatccatttgtctcagtaccatttata---taaaaggttaACTCTGGGCTA-T-------CAGCCTTCCTGTTTGGAAGTCTTGCTGATCCATCCATCATCTTTAAAGTTCACAATTAGATACTCTTTTGACCTG-------GTTCTTGTGCATACAACAC--TGGTGCTGATCCTGTTCTTGGCACAGATCTTAAATTCTTGGAAAATGCAGTTGCCCACATCCATCTTATTTTACTGAAATAGAGAGATATGCATAGCGTAGTTTGATAGCTCAATGCATAATTAATGGAATAAACATTTCATTACATT----------ATTTCAAGAATACACCTGTAAAATATCAGGTTGCATCTAATTGAAT
i canFam3.chr2                 C 0 C 0
e calJac3.chr1                 130406309  11 - 210400635 I
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1376262.000000
s hg38.chr14_GL000009v2_random     45089 203 +    201709 TATCAGAGACACATAGTAGATTAGTATTTTGACTTTCAA---AATTTCAGAGCCAAGTTGTGTGCTATAGAGA----------------A--------GCATTGTGGCATAACATAGAAATGGGATGGTCTTAACTTCTCCATACAAA-----------------------------------------------CAAGCTTGGAGTAAGGTAAAGGAGAAGTTGCATTT-G-TGTCTTAACACT--CAAAACACACTATGCTTATTTTACTTCTGTGAAG
s panTro5.chr9                  41724645 204 + 116767853 TATCAGAGACACATAGTAGATTAGTATTTTGACTTTCAA---AATTTCAGAGCCAAGTTGTGTGCTATAGAGA----------------A--------GCATTGTGGCATAACATAGAGATGAGATGGTCTTTACTTCTCCATACAAA-----------------------------------------------CAAGCTTGGAGTAAGGTAAAGGAGAAATTGCATTT-GAAGTCTTAACACT--CAAAACACACTATGCTTATTTTACTTCTGTGAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96073300 204 - 114479721 TATCAGAGACACATAGTAGATTAGTATTTTGACTTTCAA---AATTTCAGAGCCAAGTTGTGTGCTATAGAGA----------------A--------GCATTGTGGCATAACATAGAGATGAGATGGTCTTTACTTCTCCATACAAA-----------------------------------------------CAAGCTTGGAGTAAGGTAAAGGAGAAATTGCATTT-GAAGTCTTAACACT--CAAAACACACTATGCTTATTTTACTTCTGTGAAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           10668 200 +     53730 TATCAGAGACA---AATAGATTAGTATTTTGACTTTTGA---AATTTCAGAGCCAAGTTGTGTGCTGTAGAGA----------------A--------GCATTGTAGTATAATACAGAGATGGGATGGTCTTAACTTCTCCATACAAA-----------------------------------------------CAAGCTTGAAGTAA-GTAAAGGAGAAATTGCATTT-GATGTCTTAACACT--CAAAGCATACTGTGCTTATTTTACTTCTGTGAAG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40842238 215 + 122973662 TATCAGAGACACATAGTAGATTAGTATTTTGACTTTCAA---AATTTCAGAGCCAAGTTATGTGCTCTAGAGATGCATTGTGGTATAACA--------GCATTGTGGTATAACATAGAGATGGGATGATCTTAACTTCTCCAAACAAA-----------------------------------------------CAAGCTTGAAGTAAGGTAAAGGAGAAATTGCATTT-GATTTCTTAACACT--CAGAGCACACTATG-----TTTACTTCTGTGAAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   535550 199 - 111343173 TATCAGAGACAAATAGTAGATTAGTATTTTGAATTTCAA---AATTTCAGAGGCGAGTTTTGTGCTATAGAGA----------------A--------GCATTGTGGTGTAACATAGAGAGCAGACGATCTTAACTTCTCCATACAAA-----------------------------------------------CAAGCCTGGA-----GTAAAGGAGAAACTGCATTT-GATGTCTTAACACT--CAAAGCACACTATGTTTATATTACTTCTGTGAAG
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          377595 202 +    434444 TATCAGAGACACATAGTAGATTAGTATTTTGACTTTCAA---AATTTCAGAGCCAGCTTGTGTGCTGTAGAGA----------------A--------GCCTTGTGGTATAACACCGCGATGGGATGGTCTTAATGTCTCCATACAAA-----------------------------------------------CAAGCGTGGAGTAAGGTAAAGGAGAAATTGCATTG-GATTTCTTAACACT--CAAAGTACAT--TGTTTATTTTACTTCTGCGAGG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          425082 202 -    438202 TATCAGAGACACATAGTAGATTAGTATTTTGACTTTCAA---AATTTCAGAGCCAGCTTGTGTGCCATAGAGA----------------A--------GCCTTGTGGTATAACACAGAGATGGGATGGTCTTAATGTCTCCATACAAA-----------------------------------------------CAAGCTTGGAGTAAGGTAAAGGAGAAATTGCATTG-GATTTCTTAACACT--CAAAGTACAT--TGTTTATTTTACTTCTGCGAGG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66474579 202 +  90373283 TATCAGAGACACATAGTAGATTAGTATTTTGGCTTTCAA---AATTTCAGAGCCAGGTTGTGTTCTATAGAGA----------------A--------GCCTTGTGGTATAACACAGAGATGGGATAGTCTTAACGTCTCCATACAAA-----------------------------------------------CAAGCTTGGAGTAAGGTAAAGGAGAGATTGCGTTT-GATTTCTTAACACT--CAAAGCACAT--TGTTTGTTTTACTTCTGCGAGG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1525202 202 -   1547936 TATCAGAGACACATAGTAGATTAGTATTTTGACTTTCAA---AATTTCAGAGCCAGCTTGTGTGCTATAGAGA----------------A--------GCCTTGTGGTATAACACAGAGATGGGATGGTCTTAATGTCTCCATACAAA-----------------------------------------------CAAGCTTGGAGCAAGGTAAAGGAGAAATTGCATTG-GATTTCTTAACACT--CAAAGTACAT--TGTTTATTTTACTTCTGCGAGG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           40122 202 +    168452 TATCAGAGACACATAGTAGATTAGTATTTTGACTTTCAA---AATTTCAGAGCCAAGTTGTGTGCTATAGAGA----------------T--------GTATTGTGGCATAACATAGAGATGGGATGGCCTTAACTTCTCCATACAAA-----------------------------------------------CAAGCTTGAAGTAAGGTGAAGGAGAAATTGCATTT-GATGTCTTAGCACT--CAAAGCGCAC--TGTTTATTTTACTTCTTTGAAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130406320 204 - 210400635 TATCAGAGACAAATAGCAGATTTGTATTTTGAATTTCAA---AATTTCAGAGTCAAGTTGTGTGCTATAGAGA----------------A--------ACATTGTGGTATAACATAGAGATGAGATGGTCCTTACTTCTCCACACAAA-----------------------------------------------GAAGCTTGAAGTAAGGCAAAGAAGAAATTGCATTT-GATTTCTTAACACT--GAAAGCACACTATGTTTGTTTTACTTCTGTAAAG
i calJac3.chr1                 I 11 C 0
s saiBol1.JH378105              64667839 259 -  72162052 TATCAGAGACAAATAGTAGATTAGTATTTTGAATTTCAA---TATCTGAGAGCCAATTTGTATGCTATAGAGA----------------ACATATGTTACACTGTGGTATAGCATAAAGATGGCATGGTCTTAACGTCTGCTTACAAACAAGCTTGtttgttgaaaagactatttttcccccatttaattattttgtagcttGAAGTAAGGTAAAGGAGTCATTGGATTTAAATTTCTTCACATT--CGAAGCAGACAGCATTTATTTTGCTT-TGTGAAG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1080471 211 +   1314817 TATCAGAGACAAATAGTAAATTAGTATTTTGAATTTCAA---TATCTGAGAGCCAATTTGTATGCTATAGAGA----------------ACATGTGTTACACTGTGGTATAGCATGAAGATGGGATGGTCTTAACTTCTACTTACAAA-----------------------------------------------CAAGCCTGAAGTAAGGTAAAGGGGTCATTGGATTT-AATTTCTTCACATT--CAAAGCAGACTACATTTATTTTACTT-TGTGAAG
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79147965 205 -  85426708 TATCAGAGACAAATATTAGGTTAGCAATTTGAATTACAAAAGAATTTCAAAGCCAATTTGTATGATATGGAGA----------------A--------GCATTGTAGTACAATATAAAGATGAGACAGTCTT-ACCTCCCCACAAAAA-----------------------------------------------TAAGCTTGCAGTAAGATAAAGGAGAATTTGTATTT-AA---CTTAAATGTGCCAAAGAACAATATATTTGTTTTGTTAATGAAAAG
i canFam3.chr2                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=5392.000000
s hg38.chr14_GL000009v2_random     45292 4 +    201709 AATA
s panTro5.chr9                  41724849 4 + 116767853 ACTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96073504 4 - 114479721 ACTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           10868 4 +     53730 ACTA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40842453 2 + 122973662 AC--
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   535749 4 - 111343173 ACTA
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          377797 4 +    434444 ACAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          425284 4 -    438202 ACAG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66474781 4 +  90373283 ACAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1525404 4 -   1547936 ACAG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           40324 4 +    168452 ACTA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130406524 4 - 210400635 ATTA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64668098 4 -  72162052 ATGA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1080682 4 +   1314817 ATGA
i cebCap1.NW_016107851v1       C 0 C 0
s tarSyr2.KE943057v1              677177 4 -    725864 aaTG
i tarSyr2.KE943057v1           N 0 N 0
s canFam3.chr2                  79148170 4 -  85426708 ATTA
i canFam3.chr2                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=611197.000000
s hg38.chr14_GL000009v2_random     45296 90 +    201709 AAAATCATTCCATAATATTCTCCTTATTTCCTCATTTAG-AAAA-GAAAATGAAAATTGAATACTAGGTTGATTAATAAATACTCAAAACTT
s panTro5.chr9                  41724853 90 + 116767853 AAAATCATTCCATAATGTTCTCCTTCTTTCCTCATTTAG-AAAA-GAAAATGAAAATTGAATACTAGGTTGATTAATAAATACTCAAAACTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96073508 90 - 114479721 AAAATCATTCCATAATGTTCTCCTTCTTTCCTCATTTAG-AAAA-GAAAATGAAAATTGAATACTAGGTTGATTAATAAACACTCAAAGCTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           10872 91 +     53730 AAAATCATTCCATAATGTTCTCCTTATTTCCTCATTGAG-AAAAGGAAAATGAAAATTGAATACTAGATTGATTAATAAATACTCAAAGCTT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40842455 91 + 122973662 AAAATCATTTCATAATGTTCTCCTTATTTCCTCATTGAG-AAAAGGAAAATAAAAATTAAATACCAGGTTGATTAATAAATACTCAAAGCTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   535753 89 - 111343173 AAAATCATTCCATAATGTT---CTTATTGCCTCATTGAGAAAAAGGAAAATGAAAATTGAATACTAGATTGATTAATAAATACTCAAAGCTG
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          377801 91 +    434444 AAAATCACTCCATAATGTTCTCCTTATTTCCTTATTGAG-AAAAGGAAAATAAAAATTAAATACTAGATTGATTAATAAACACTCAAAGCTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          425288 91 -    438202 AAAATCACTCCATAATGTTCTCCTTATTTCCTTATTGAG-AAAAGGAAAATAAAAATTAAATACTAGATTGATTAATAAACACTCAAAGCTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66474785 91 +  90373283 AAAATCATTCCATAATGTTCTCCTTATTTCCTTATTGAG-AAAAGGAAAATAAAAATTAAATACTAGATTGATTAATAAACACTCAAAGCTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1525408 91 -   1547936 AAAATCACTCCATAATGTTCTCCTTATTTCCTTATTGAG-AAAAGGAAAATAAAAATTAAATACTAGATTGATTAATAAACACTCAAAGCTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           40328 91 +    168452 AAAATCATTCCATAATGTTCTCCTTATTTCCTCACTGAG-AAAAGGAAAATGAAAATTGAACACTAGATGGATTAATAAATACTCAAAGCTT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130406528 82 - 210400635 CAAATAATTCCATAATG------TTATTTCCTCATTGAA-AAAAGAAAAATGAGAATTGAATGCTAGGCTGATTAATAAATACTCTGAG---
i calJac3.chr1                 C 0 I 3
s saiBol1.JH378105              64668102 85 -  72162052 AAAATGAATCTGCAATATT---TTTATTGCCTCATTGAG-AA---GAAAATGAAAATTGAATACTAGACTGATTAATAAATACTCAAAGCTG
i saiBol1.JH378105             C 0 I 4
s cebCap1.NW_016107851v1         1080686 85 +   1314817 AAAATGAATCTACAATATT---CTTATTGCCTCATTGAG-AA---GAAAATGAAAATTGAATACTAGACTGATTAATACATACCCAAAGCTG
i cebCap1.NW_016107851v1       C 0 I 4
s canFam3.chr2                  79148174 82 -  85426708 TAAATTATTCCCTAATGTTCTCTTTATTTCATCACTGAT-GAAGGTAGAATGAAGATT---------ATTGATTTAGAAACCCTCAAAGCTG
i canFam3.chr2                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    121652 8794 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=-975.000000
s hg38.chr14_GL000009v2_random     45386 1 +    201709 C
s panTro5.chr9                  41724943 1 + 116767853 C
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96073598 1 - 114479721 C
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           10963 1 +     53730 A
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40842546 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   535842 1 - 111343173 C
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          377892 1 +    434444 A
i macNem1.NW_012012823v1       C 0 I 8633
s cerAty1.NW_012002921v1          425379 1 -    438202 A
i cerAty1.NW_012002921v1       C 0 C 0
s papAnu3.chrUn_NW_003903855v1    130446 1 -    180295 C
i papAnu3.chrUn_NW_003903855v1 I 8794 C 0
s chlSab2.chr2                  66474876 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1525499 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           40419 1 +    168452 C
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130406613 1 - 210400635 C
i calJac3.chr1                 I 3 C 0
s saiBol1.JH378105              64668191 1 -  72162052 C
i saiBol1.JH378105             I 4 C 0
s cebCap1.NW_016107851v1         1080775 1 +   1314817 C
i cebCap1.NW_016107851v1       I 4 C 0
s canFam3.chr2                  79148256 1 -  85426708 C
i canFam3.chr2                 C 0 I 4
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=8875.000000
s hg38.chr14_GL000009v2_random     45387 2 +    201709 TT
s panTro5.chr9                  41724944 2 + 116767853 TT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96073599 2 - 114479721 TT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           10964 2 +     53730 TT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40842547 1 + 122973662 -T
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   535843 2 - 111343173 TT
i rheMac8.chr15                C 0 C 0
s cerAty1.NW_012002921v1          425380 1 -    438202 -C
i cerAty1.NW_012002921v1       C 0 C 0
s papAnu3.chrUn_NW_003903855v1    130447 2 -    180295 TT
i papAnu3.chrUn_NW_003903855v1 C 0 I 10755
s chlSab2.chr2                  66474877 1 +  90373283 -C
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1525500 1 -   1547936 -C
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           40420 2 +    168452 TT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130406614 2 - 210400635 TT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64668192 2 -  72162052 TT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1080776 2 +   1314817 TT
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79148261 2 -  85426708 TT
i canFam3.chr2                 I 4 C 0
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macNem1.NW_012012823v1          377893 8633 +    434444 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1259139.000000
s hg38.chr14_GL000009v2_random     45389 190 +    201709 CTTTTAGAATTTTAGTTAATTGAAATCAGGTA-AATGTCTGATTTTGCCTATGTCACCCAGTATTTCT-----AGTTGTT---TTTCAAATCATACATCTTCTTGCTTCCCAGTCTTACTT----CCTAACTTGAGGGGAAATTGTAAGAAGACACCCTTGCCTTGTTATCAGAGTTCATAATTG-AAGTTGTTTTAGGAAAA-T
s panTro5.chr9                  41724946 191 + 116767853 CTTTTAGAATTTTAGTTAATTGAAATCAGGTA-AATGTCTGATTTGGGCTATGTCACCAAGTATTTCT-----AGTTGTT---TTTCAAATCATACATCTTCTTGCTTCCCAGTCTTATTT----CCTAACTTGAGGGGAAATTGTAAGGAGACACACTTGCCTTGTTATCAGAGTCCATAATTG-AAGGAGTTTTAGGAAAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96073601 190 - 114479721 CTTTTAGAATTTTAGTTAATTGAAATCAGGTA-AATGTCTGACTTTGGCTATGTCACCAAGCATTTCT-----AATTGTT---TTTCAAATCATACATCTTCTTGCTTCCCAGTCTTATTT----CCTAACTTGAGGGGAAATTGTAAAGAGTCACCCTTGCCTTGTTATCAGAGCTCATAATTG-AAGGAGTTTTAGGAAAA-T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           10966 189 +     53730 CTTTTAGAATTTTCATTAACTGAAATCAGGC--AATGTCTGATTTTGGTTATCTAACCAAGTATTTCT-----AGTTGTT---TTTCAAATCATAC-TCTTCTTTCTTTGCAGTCTTATTT----CCTAACTTGCGGGGAAATTGTAAGGAGACACCCTTGCCTTGTTATGAGAGTTCATAATTG-AAGGGTTTTTAGGAAATGT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40842548 191 + 122973662 CTTTTAGAATTTTAGTTAATTCAAATCAGGTA-AATGTCTGATTTTGATTGTGTAACCAAGTATTTCT-----GGTTGTT---TTTCATATCATATGTCTTCTTGCTTCCCAGTCTTATTT----CCTAACTTGAGGGGAAATTGTAAGGAGACACCCTTGCCTTGTTATCAGAGTTCACAATCG-AAGGAGTTTTAGGAAAAGT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   535845 192 - 111343173 CTTTTAGAATTTTCATTAATTGAAATCAGGTA-AATGTCTGATTTTGGTTATGTAACCAAGTATTTCT-----AGTTGTT---TTTCAAATCATATGTCTTCTTGCTTCGCAGTCTTATTT----CGTGAGTTGAGGGGAAATTGTAAGGAGACACCCTTGCCTTGTTATCAGAGTTCGTAATTGAAAGGAGTTTTAGGAAAAGT
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          386526 177 +    434444 CTTTTAGAAATTTAGTTAATTGAAATTAGGTC-AATGTCTGATTTTGATTATGTAACCAAGTATTTCT-----AGTTGTT---TTTCGAATCATATGTCTTCTTGCTTCCCAGTCTTATTT----CCTAACTTGAGGGGA--------------ACCCTTGCCTTGTTATTAGAGTTCATAATTG-AAGGGGTTTTAGGAAAAGT
i macNem1.NW_012012823v1       I 8633 C 0
s cerAty1.NW_012002921v1          425381 177 -    438202 CTTTTAGAATTTTAGTTAATTGAAATTAGGTC-AATGTCTGATTTTGATTATGTAACCAAGTATTTCT-----AGTTGTT---TTTCAAATCATATGTCTTCTTGCTTCCCAGTCTTATTT----CCTAACTTGAGGGGA--------------ACCCTTGCCTTGTTATTAGAGTTCATAATTG-AAGGGGTTTTAGGAAAAGT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66474878 178 +  90373283 CTTTTAGAATTTTAGTTAATTGAAATTAGGTC-AATGTCTGATTTTGATTATGTAACCAAGTATTTCT-----AGTTGTT---TTTCAAATCATATGTCTTCTTGCTTCCCAGTCTTATTT----CCTAACTTGAGGGGA--------------ACCCTTGCCTTGTTATTAGAGTTCATAATTGAAGGGGGTTTTAGGAAAAGT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1525501 176 -   1547936 CTTTTAGAATTTTAGTTAATTGAAATTAGGTC-AATGTCTGATTTTGATTATGTAACCAAGTATTTCT-----AGTTGTT---TTTCAAATCATATGTCTTCTTGCTTCCCAGTCTTATTT----CCTAACTTGAGGGGA--------------ACCCTTGCCTTGTTATTAGAGTTCATAATT--AAGGGGTTTTAGGAAAAGT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           40422 192 +    168452 CTTTTAGAATTTTAGTTAATTGAAATCAGGTA-AATGTCTGATTTTGGTTATGTAACCGAGTATTTCT-----AGTTGTT---TCTCAAATCATATGTCTTCTTGCTTCCCAGTCTGGTTT----CCTACCTTGAGGGGAAATTGTAAGGAGACACCCTTGCCTTGTTATCAGAGCTCATAATTGAAGGGGGTTTTAGGAAAAGT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130406616 192 - 210400635 CTTGTAGAATTTTAGTTAATTGAAATCAGGTA-ACTGTCTGATTTTGGTTATGTAACCAAATATTTCT-----AGTTGTT---TTTCAGAGCATACGTCTTCTTGCTTCCCAGTCTTATTT----CCTAACCTGAGGGGAAATTCTAAGGAGACGTTCTGGCCTTGTGATCAGAGTTCATAATTGAAGGAGGTTGTAGGAAAAGT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64668194 187 -  72162052 CCTTTAGAATTTCAGTTAATTGAAATCAAGAG----GTCTGACTTTTGTTATTTAACCAAATATTTCT-----AGTTGTT---TTTGA-ATCATGCATCTTCTTGTTTCCCAGTCTCATTT----TCTAACTTGAAGGGAAATTCTAA-TAGACACCCTTGCCTTGTTATTGGAGTTTATAACTGAATGGAATTATAGGAAAAGT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1080778 190 +   1314817 CCTTTAGAATTTCAGTTAATTTAAATCAAGAA-AAGGTCTGATTTTTGTTATTTAACCAAATGTTTCT-----ATTTGTT---TTTGA-ATCATGCATCTTGTTGTTTCCCAGTCTCATTT----TCTAACTTGAGGGGAAATTCTAA-TAGACACCCTTGCCTTGTTATTGGAGTTTATAAGTGAATGGAATTATAGGAAAAGT
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79148263 201 -  85426708 CTTTTAGAATTGCAGTTAATTGAAATCAGGTAAAAGGTTCCATTTTGCTTATTAAAC----TCTTTCTAGTTCAGTTGTTACACTTCAAATCATATGTCTCTCTGCTTGTCAGTCTTTGTTCTCCCTTAACTTAAAGGGAAATTCAAAAGAAATGTTCCTGCTTAGTTTTAATAATTTGTAATTTGAAGAGAATCTTAGAAAAAT
i canFam3.chr2                 C 0 I 6736
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=3065544.000000
s hg38.chr14_GL000009v2_random     45579 470 +    201709 TCCTCCTCAGCAGCTTATGTCTCTCTCCTGGTTATCTACTGCTTCTCAATAATGTTTGACATCAATAAATAAATATCAACCTTTATTAGATCCTGCTTT-AAAGGAGACTCTTTTCTGCTGCATAAGTTATGTTTCCTGTTGTCTCTTTTTAAAA-----CTTATTTTCCT-AACAATTAcccagagtcttgtggcttgaaagaaaa--acatt-tattttgttcatgaacctgtggtttgggaaaaacttggccaggacagcttg-ctctgctcccttcagcttccctaggaacagctgatcagttggggaaatggaatcctctgaag-ctttggtcacccacttgtttgatggttgatgctggccatcggctgtaaacttggttgggacaggcagcatgaacactgacacaggcactttcaggctctgtttgtggcctgatggctc-tcacaatt--ggggctgggttccaagggaaaacagt
s panTro5.chr9                  41725137 468 + 116767853 TCCTCCTCAGCAGCTTATGTATCTCTCCTGGTTATCTGCTGCTTCTCAATAATGTTTGACATCAATAAATAAGTCTCAACATTTATTAAATCCTAGTTT-AAAGGAGA--CTTTTCTGCTGCATAAGTTATGTTTCCTGTTGTCTCTTTTTAAAA-----GTTATTTTTCT-AACGATTAcccagagtcttgtggcttgaaagaaaa--acatt-tattttgttcatgaacctgtggtttgggaaaaacttggccaggacagcttgtctctgctcccttcagcttccctaggaacagctgatcagttggggaaatggaatcctctgaag-ctttgctctcccacgtgtttgatggttgatgctggccagcggctgtaaacttggttgggaca-gcagcatgaacactgacacaggcactttcaggctctctttgtggcctgatggctc-tcacaatt--ggggctgggttccaagggaaaacagt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96073791 471 - 114479721 TCCTCCTCAGCAGCTTATGTCTCTCTCCTGGTTATCTGCTGCTTCTCAATAATGTTTGACATCAATAAATACATATCAACATTTATTAGATCCTGCTTT-AAAGGAGACTCTTTTCTGCTGCATAAGTTATGTTTCCTGTTGTCTCTTTTTAAAA-----CTTATTTTCCT-AACAATTAcccagagtcttgtggcttgaaagaaaa--acatt-tattttgttcatgaacctgtggtttgggaaaaacttggccaggacagcttgtctctgctcccttcagcttccctaggaacagctgatcagttggggaaatggaatcctctgaag-ctttgctctcccacgtgtttgatggttgatgctggccatcggctgtaaacttggttgggacaggcagcatgaacactgacacaggcactttcaggctctctttgtggcctaatggctc-tcacaatt--ggggctgggttccaagggaaaacagt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           11155 471 +     53730 TCCTCCTCAGCAGCTTATGTCTCTCTCCTGGTTATCTGCTGCTTCTCAATAATGTTTGCCATCAATAAATTAATCTCAACATTTATTAGATCCTACTTT-AAAGGAGACTCTTTTCT-CTGCATAAGTTATGTTTCCTGTTGTCTCTTTTTAAAA-----CTTATTTTTCT-AACAATTATccagggttttgtggcttaaaagaaaa--acatt-tattttgttcatgaacctgtggtttgaaaaaagcttagccaggacaggtcatctctgctcccctcagcttccctaggaatagctgatcagttggggaaatggaatcctctgaag-ctttgcttccccatgtgtttgatggttgatgctggccattggctggaaccttggttggagcaggcagcatgaatattgacactgacactcccaggctgtctctctggcctgat--ctcatcacagtctgggggctgagttcaaagggaaagcagt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40842739 471 + 122973662 TCGTCGTCAGCAGCT--TGTCTTTCTCCTGGTTATCTGCTGCTTCTCAATAGTGTTTGCCATCAATAAATTAACCTCAACATTTATTAGATCCTACTTT-AAAGGAGACTGTTTTCTGCTGCATAAGTTATGTTTCCTGTTGTCTCTTTTTAAAA-----CTTATTTTTCT-GACAATTAcccagagttttgtggcttaaaagaaaa--acatt-tattttgttaatgaacctgtggtttggaaaaagcttggccaggacagcttgtctctgctcccctcagcttccctaggaacagctgatcagttgggaaaatggaatcatctgaag-ccttgctcacctatgtgtttgatggttgatgctggccattggctggaaccttggttggggcaggcagcatgaacactgacactggcactgccaggttctctttgtggcctgagcgctc-tcacaatctgggggctgagttccaagggaaagcagt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   536037 473 - 111343173 TCCTCTTCATCTGCTTATGTCTCTCTCCTGGTTATCTGCTGCTTCTCAATAATGTTTGTCATCAATAAATTAATCTCAACATTTATTAGATCCTACTTT-AAAGGAGACTCTTTTCTGCTGCATAAGTTACGTTTCCTGTTGTCTCTTTTTAAAA-----CGTATTTTTCT-AACAAGTAcccagagatttttagcttaacagaaaa--acatt-aattttgttcatcaacctgtggtttggaaaaaggttggccaggacagcttgtctctgctcccctcagcttccctaggaacagctgatcacttggggaaatggaatcatctgaag-ctttgctcacccatgtgtttgatggttgatgctggccattggctggaaccttgcttggggcaggcagcatgaacactgacactggcactcccagtctgtctttgtggtctgatctctc-tcacaatctgggggctgagtttgaagggaaagcagt
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          386703 472 +    434444 TCCTCCTCAGCAGCTTATGTCTCTCTCCTGGTTATCTGCTGCTTCTCAGTAATGTTTGCCATCAATAAATTAACCTCAACATTTATTATATCCTACTTT-AAAGGAGACTCTTTTCTGTTGCAT--GTTGTGTTTCCTGTTGTCTCTTTTTGAAA-----CTTATTTTTCT-AACAATTAcccagagttttgtggcttaaaagaaaa--acatt-ttttttgttaatgaacctgtggtttggaaaaagtttggccaggacagcttgtctctgctcctctcagcttccctaggaacagctgatcagttggggaaatggaatcatctgaagcctttgttcacccatgtgtttgatggttgatgctggccattggctggaacctttgtttgggcaggcagcatgaatactgacactggcactgccaggttctctttgtggcctgcgtgtgc-tgacaatctgggggctggattctaagtgaaagcagt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          425558 472 -    438202 TCCTCCTCAGCAGCTTATGTCTCTCTCCTGGTTATCTGCTGCTTCTCAGTAATGTTTGCCATCAATAAATTAACCTCAACATTTATTATATCCTACTTT-AAAGGAGACTCTTTTCTGTTGCAT--ATTGTGTTTCCTGTTGTCTCTTTTTGAAA-----CTTATTTTTCT-AACAATTAcccagagttttgtggcttaaaagagaa--acttt-ttttttgttaatgaacctgtggtttggaaaaagtttggccaggacagcttgtctctgctcctctcaacttccctaggaacagctgatcagttggggaaatggaatcatctgaggcctttattcacccatgtgtttgatggttgatgctggccattggctggaaccttcctttgggcaggcagcatgaatactgacactggcactgccaggttctctttgtggcctgcgtgtgc-tgacaatctgggggctggattctaagtgaaagcagt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66475056 474 +  90373283 TCCTCCTAAGCAGCTTATGTCTCTCTCCTGGTTATCTGCTGCTTCTCAGGAATGTTTGCCATCAGTGAATAAATCTCAACATTTCTTAGATCCTACTTT-AAAGGAGACTCTTTTCTGTTGCAT--GTTGTGTTTCCTGTTGTCTCTTTTTGAAA-----CTTATTTTTCT-AACAATTAcccagagttttgtggcttaaaagaaaaatatatt-ttttttgttaatgaacctgtggtttggaaaaagtttggccaggacagcttgtctctgctcctctcagcttccctaggaacagctgatcagttggggaaatggaatcatctgaaggctttgttcacccatgtgtttgatggttgatgctggccattggctggaacattcgtttgagcaggcagcatgaacactgacactggcactgccaggttctcttagtggcctgcgtgtgc-tgacaatctgggggctgggttgtaagggaaagcagt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1525677 472 -   1547936 TCCTCCTCAGCAGCTTATGTCTCTCTCCTGGTTATCTGCTGCTTCTCAGTAATGTTTGCCATCAATAAATTAACCTCAACATTTATTATATCCTACTTT-AAAGGAGACTCTTTTCTGTTGCAT--GTTGTGTTTCCTGTTGTCTCTTTTTGAAA-----CTTATTTTTCT-AACAATTAcccagagttttgtggcttaaaagagaa--acttt-ttttttgttaatgaacctgtggtttggaaaaagtttggccaggacagcttgtctctgctcccctctgcttccctaggaacagctgatcagttggggaaatggaatcatctgaggcctttattcacccatgtatttgatggttgatgctggccattggctggaaccttcctttgggcaggcagcatgaatactgacactggcactgccaggttctctttgtggcctgcgtgtgc-tgacaatctgggggctggattctaagtgaaagcagt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           40614 472 +    168452 TCCTCCCCAGCAGCTTATGTCTCTCTCCTGGTTATCTGCTGCTTCTCAGTAATGTTTGCCATCAATGAATGAATCTCAACATTTATTAGATCCTACTTT-AAAGGAGACTCTTTGCTGCTACACAAGTTATGTTTCCTGTTTTCTC-TTTTAAAC-----TTTATTTTTCT-GACGATTAcccagagttttgtggcttaaaagaaaa--acaat-tcgtttgtttatgaacctgtggtttggaaaaagcttggccaggagagcttgtctctgctcccctcagcgtctctaggaacagctgatcatttggggaaatggaatcatctgaag-ctttgctcacccatgtgtttgatggttgatgctggccattggctggagccttggttggggcaggcagcatgaacactgacactggcactgccaggctgtctttgtggcctgatctctc-tcacaatctgggggctgaattcgaagggaaagcact
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130406808 474 - 210400635 TCCTCCTCAGCATCTTCTGTGTCTTTCCTGGTTAGCTGCTGCTTCTCAATAATGTTTGTCATCAATAAATTAATCTCAACCTTTATTAGATCCTACTTGAAAAGGAGACTCCTTTCTGCTGCATAAGTTATGTTTCCTGTTGTCTCTTTTTAAAA-----CTTATTTTTCT-AACAATTAcccagagttgagtggcttaaaagaaaa--gcatt-aattttgttcatgaatctctggtttggaaaaagcttagcccggacagcttgtctctgctcccctcagcttccctaggaacaggtgatcagttgggggaatggaatcatctgaag-ctttgctcacccacgtgttcgatggttgatgctggccattggctggaaccttggttggggcaggcagcatgaacactgacactggaactcccaggctctctttgtggcctgagctctc-tcacagtctgggtgctgagttcgaagggaaagcagc
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64668381 469 -  72162052 TTCTCCTCAGGAGCTTCTGTCTTTCTCCTGGTTATCTGCCGATTCTCAATAATGCTTGTCATCAATCGATTAATCTCAAAATTTATTAGATCCTACTTT-AAAGGAGACTATATTCTGCTGTATGAGTTCTATTTCTTGTTGTCTCtttttaaaaataattttatttttCC-ATCAATTAcccagactttagtggcttgaaa--------catt--tttttgttcatgcttctgtgatatggaaaaggcttgggcaggacagcttgtctctgctcccctcagcttccctagggacagctgaaagcctggagaagtggcattctctgaag---gtgctcactccagtgtttggttgttgatgctggctgttggctggaactttgcttggggtaggcagtgtaagcactggtactggaactcccaagctctctttgcggcctgagcgttc-ttacaacatgcgggctgggttccaagggcaagcAGT
i saiBol1.JH378105             C 0 I 255
s cebCap1.NW_016107851v1         1080968 474 +   1314817 TTCTCCTCAGGAGTTTCTGTCTTTCTTCTGGTTATCTGCCACTTCTCAATAATGCTTGTCATCAATCAATTAATCTCAAAATTTATTAGATCCTACTTT-AAAGGAGACTACATTCTGCTGTATAAGTTCTGTTTCTTGTTGTCTCTTTTTAAAAATAATTTTATTTTTCCTAACAATTAcccagactttagtggcttgaaa--------catttttttttgctcatgcatctgtgatatggaaaaagcttggccaggacagcttgtctctgctcccctcagcttccctagggacagctgaaagcctggggaagtggcatcctttgaag-gtttgctcactccagtgtttggttgttgatgctggctgttggctggaactttgctcggggtaggcagcataaacactgatactggaactcccaggctctctttgcggcctgagctttc-tcacaaccttcgggctgggttccaagggcaaacAGT
i cebCap1.NW_016107851v1       C 0 I 590
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79148464 6736 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2549564.000000
s hg38.chr14_GL000009v2_random     46049 514 +    201709  
s panTro5.chr9                  41725605 517 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96074262 517 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           11626 511 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40843210 519 + 122973662  
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   536510 512 - 111343173  
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          387175 506 +    434444  
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          426030 506 -    438202  
i cerAty1.NW_012002921v1       C 0 I 8
s chlSab2.chr2                  66475530 506 +  90373283  
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1526149 506 -   1547936  
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           41086 519 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130407282 541 - 210400635  
i calJac3.chr1                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79148464 6736 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1081442 590 +   1314817 I
e saiBol1.JH378105              64668850 255 -  72162052 I
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1694748.000000
s hg38.chr14_GL000009v2_random     46563 888 +    201709  
s panTro5.chr9                  41726122 888 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96074779 886 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           12137 877 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40843729 874 + 122973662  
i nomLeu3.chr1a                C 0 I 28
s rheMac8.chr15                   537022 897 - 111343173  
i rheMac8.chr15                C 0 C 0
s colAng1.NW_012121088v1           41605 880 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130407823 824 - 210400635  
i calJac3.chr1                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79148464 6736 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1081442 590 +   1314817 I
e saiBol1.JH378105              64668850 255 -  72162052 I
e manLeu1.NW_012105442v1         1526655   0 -   1547936 C
e chlSab2.chr2                  66476036   0 +  90373283 C
e cerAty1.NW_012002921v1          426536   8 -    438202 I
e macNem1.NW_012012823v1          387681   0 +    434444 C
e macFas5.chr13                111111687 18063 - 111193037 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=63767.000000
s hg38.chr14_GL000009v2_random     47451 41 +    201709 tagtccctcattaggtgaatagcttgacaatattttctcct
s panTro5.chr9                  41727010 41 + 116767853 tagtcccttattagatgaatagcttgacaatattttctccc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96075665 41 - 114479721 tagtcccttattagatgaatagcttgacaatattttctccc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13014 40 +     53730 tagtcccttattagatgaatag-ttgacaatattttctccc
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   537919 41 - 111343173 ttgtcttttattagatgaaaaacttgaaaatattttcttcc
i rheMac8.chr15                C 0 C 0
s colAng1.NW_012121088v1           42485 40 +    168452 tagtcccttattagatgagtag-ttgacaatattttctccc
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130408647 41 - 210400635 tagtcccttattagatgaatagcttgacaatattttctttt
i calJac3.chr1                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79148464 6736 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1081442 590 +   1314817 I
e saiBol1.JH378105              64668850 255 -  72162052 I
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e macFas5.chr13                111111687 18063 - 111193037 M
e nomLeu3.chr1a                 40844603 28 + 122973662 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=101144.000000
s hg38.chr14_GL000009v2_random     47492 59 +    201709 attctacaggttttctcttcactcagttgtttgctggacagaagctctttagcttaatg
s panTro5.chr9                  41727051 59 + 116767853 attctgcaggttttcttttcactcagttgtttgcctgacagaagctctttagcttaata
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96075706 59 - 114479721 attctacaggttttctcttcactcagttgtttgcctgacagaagctctttagcttaatg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13054 55 +     53730 attccactggttttctcttcactcag----ttgctgggcagaagctctttatcttaatg
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   537960 29 - 111343173 attctataggttttcacttcactcagt------------------------------tg
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111129953 59 - 111193037 ACtctacaggttttctcttcactcagttgtttgctggccagaagctctttagctcaatg
i macFas5.chr13                M 18063 C 0
s colAng1.NW_012121088v1           42525 59 +    168452 actctacaggttttctcttcactcagttgtttgctggccggaagctctttagctcaatg
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130408688 59 - 210400635 attctactggttttctcttcgctcagttgtttgctgggcagaagctctttagcttaatg
i calJac3.chr1                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79148464 6736 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1081442 590 +   1314817 I
e saiBol1.JH378105              64668850 255 -  72162052 I
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e nomLeu3.chr1a                 40844603 28 + 122973662 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=909411.000000
s hg38.chr14_GL000009v2_random     47551 340 +    201709 tagtgtcttttgtctatgatttgttgtttgcctatgcttctgatgtcttacccataaaaatctttgtgcagactaatgtcctcaagcattttccttatatttacttagagtagtttgataattttgggccttacatttcagtcttcaatcgattctgagtttatgttgttatatggtgttacataggaagctaatatcattcttctccatatggatatttagttttcccagtgtcattcatttgaagaggctgtcctttccccagcgtatgttcttggaatgttcgtccaaaatcagttggctggaaatatgtgaatttatttctgggtgctgtattcta
s panTro5.chr9                  41727110 340 + 116767853 tagtaccatttatctatgatttgttgtttgcctatgcttctcatgtcttacccataaaaatctttgtgcagactaatgtcctcaagcattttccctatatttacttatagtagtttgatagttttcggccttacatttcagtcttcaattgattctgagtttatgttgttatatggtgttacataggaagctagtatcattcttctccacatggatatttagttttcccagtgccattcatttgaagaggctgtcctttctccagcgtatgttcttggcatgttcgtccaaaatcagttggctggatatatgtggacttatttctgggtgccgtattcta
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96075765 340 - 114479721 tagtaccatttgtctatcatttgttgtttgcctatgcttctgatgtcttacccataaaaatctttgtgcagactaatgtcctcaagcattttccctatatttacttatagtagtttgataattttggaccttacagttcagtcttcaatcaattctgagtttatgttgttatatggtgttacataggaagctagtatcattcttctccacatggatatttagttttcccagtgccattcatttgaagaggctgtcctttctccagcatatgttcttggcatgttcgtccaaaatcagttggctggaaatatgtggacttatttctgggtgctgtattcta
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13109 336 +     53730 taataccatttgtctatcatttggtttttgcctatgcttctgatgtcttacccataaaaatctttgtgcagactaatgtcctcaagcattttcc-tacatttacttacagtggtttcataattttaggccttaaatgtcagtcttcaatcaattctgag-ttatttcattatgtgctgttacataggaagctagtatcattcttctccatatggatatttagttttcccagtgccattcatttgaagagactgtcctttccccagtgtatgttcttggcacctt-gtccaaaatcagttggctgtaaatatgtggatttatttctgggtg-tgtattcta
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40844631 339 + 122973662 tagtaccatttgtctatcatttgttttttgcctatgcttctgatgtcttacccataaaaatctttgtgcagactaatgtcctcaagcattttccctatatttacttacagtagtttgataattttgggccttatatttcagtcttcaatcgattctgagtttattttgttatattgtgttacacaggaagctagtatcattcttctctatatggatatttagttttcctattgccattc-cttgaagaggctgtcctttccccagtgcttgttcttggcaccttcacccaaaatcagttggctggaaatatgtggatttatttctgggtgctgtattcta
i nomLeu3.chr1a                I 28 C 0
s rheMac8.chr15                   537989 333 - 111343173 tagtactgtttgtctatcgtttgttttttgcttgtgcttctgatgtcttacccatacaaatctttgtgcagactaatgtcctgaagcattttccctatgtttacttatagtagtttgataattttgggccttacatttcagtcttcaattgattctgagtttatttcgctatatagtgttagataggaagctagtgtcattct---ccatatgga----tagttttcccagtgtcattcatttgaagagggtgtcctttctccaatgtatgttcttggcatcttagtccaaaatcagttggctgtaaatatgtgtatttatttctaggtgccgtattcta
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130012 338 - 111193037 tactaccattggtctatcatttgtttttt-cctatgcttctgatgtcttacccataaaaatctttgtgcagactaatgtcctcaagcattttccctatatttacttacagtagtttgataatttggggccttacatttcagtcttcaattgattatgagtttctttt-ttatatgatgttacagaggaagctagtatcattcttccccatatggatatttagttttcccagtgccattcatttgaagagactgtcctttccccaatgtatgttcttggcaccttagtccaaaatcagttggctttaaatatgtggatttatttctgggtgctgtattcta
i macFas5.chr13                C 0 C 0
s colAng1.NW_012121088v1           42584 337 +    168452 tagtaccattggtctatcatttgtttttt-cctatgc--ctgatgtcttacccataaaaatctttgtgcagactaatgtcctcaagcattttccctatatttacttacagtagtttgataatttgggaccttacatttcagtcttcaattgattatgagttttttttgttatatggtgttacagaggaagctagtatcattcttccccatatggatatttagttttcacagtgccattcatttgaagagactgtcctttccccagtgtatgttcttggcaccttagtccaaaatcagttggctttaaatatgtggatttatttctgggtgctgtattcta
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130408747 323 - 210400635 tagtaccacttgcctatcatttgttttttgcctatgcttctgatgtcttacccataaaaatctttgtgcagatgaatgtcctaaagcattttccctatgtttacttgtagtagcttgataattttgggccttgca-ttaagtctttaatcaattctgagtttattttgttatttggtgttagatagaaagtt----------------atatgaatatttcgttttcccagtgccattcatttgaagagggcgtcctttccttaatgtatattcttggcaccttagtccaaaatcagttggctgtaaatatatggatttatttttgggtattgtattcta
i calJac3.chr1                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79148464 6736 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e dasNov3.JH570393               1784740 1431 -   2296528 I
e cebCap1.NW_016107851v1         1081442 590 +   1314817 I
e saiBol1.JH378105              64668850 255 -  72162052 I
e manLeu1.NW_012105442v1         1526655   0 -   1547936 C
e chlSab2.chr2                  66476036   0 +  90373283 C
e cerAty1.NW_012002921v1          426536   8 -    438202 I
e macNem1.NW_012012823v1          387681   0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=11070.000000
s hg38.chr14_GL000009v2_random     47891 3 +    201709 tGG
s panTro5.chr9                  41727450 3 + 116767853 tGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076105 3 - 114479721 tGG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13445 3 +     53730 tGG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40844970 3 + 122973662 tGG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538322 3 - 111343173 tGG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130350 3 - 111193037 tGG
i macFas5.chr13                C 0 C 0
s colAng1.NW_012121088v1           42921 3 +    168452 tGG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130409070 3 - 210400635 tGG
i calJac3.chr1                 C 0 C 0
s dasNov3.JH570393               1786171 3 -   2296528 TGC
i dasNov3.JH570393             I 1431 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79148464 6736 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e cebCap1.NW_016107851v1         1081442 590 +   1314817 I
e saiBol1.JH378105              64668850 255 -  72162052 I
e manLeu1.NW_012105442v1         1526655 0 -   1547936 C
e chlSab2.chr2                  66476036 0 +  90373283 C
e cerAty1.NW_012002921v1          426536 8 -    438202 I
e macNem1.NW_012012823v1          387681 0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=300908.000000
s hg38.chr14_GL000009v2_random     47894 76 +    201709 TCTTTACCCCAAGAATCATTACTTCTTAAAATGCAATTCAAATTAGCATGAAACATTTGCAGTTTAAGGAAAGGCT
s panTro5.chr9                  41727453 76 + 116767853 CCTTTACCCCAAGAATCATTACTTCTTAAAATGCAATTCAAATTAGCATAAAACATTTGCAGTTTAAGGAAGGGCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076108 76 - 114479721 CCTTTACCCCAAGAATCATTACTTCTTAAAATGCAATTCAAATTAGCATAAAACATTTGCAGTTTAAGGAAGGGCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13448 76 +     53730 CCTTTACCCCAAGAATCATTACTTCTTAAAATGCAATTCAAATTAGCATGAAACATTTGCAGTTTAAGGAAAGGCT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40844973 76 + 122973662 CCTTTACCCCAAGAGTCATTACTTCTTAAAATGCAATTCAAATTAGCATGAAACATTTGCAGTTTAAGCAAAGGCT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538325 76 - 111343173 CCTTTACCCCAAGAATCATTACTTCTTAAAATGCAATTCAAATTAGCATGAAATATTTGCAGTTTAGGGAAAGCTT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130353 76 - 111193037 CCTTTACCCCAAGAATCATGACTTCTTAAAATGCAATTCAAATTGTCCTGAAACATTTGCAGTCTAAGGAAAGGCT
i macFas5.chr13                C 0 C 0
s colAng1.NW_012121088v1           42924 76 +    168452 CCTTTACCCCAAGAATCATTACTTCTTAAAATGCAATTCAAATTGTCATGAAACATTTGCAGTCTAAGGAAAGGCT
i colAng1.NW_012121088v1       C 0 M 2175
s calJac3.chr1                 130409073 76 - 210400635 CCTTTACCCCGAGAATGATTAATTTTTAAAATGCAATTCAAATTAGCAGGAAACATTTGCAGTTTAGGGAAAGGCT
i calJac3.chr1                 C 0 C 0
s canFam3.chr2                  79155200 76 -  85426708 TCTTAACCCTGAGAATCATTTCTCCTGGGAGTGCAATTCAAATTAGTGTAAATCATTTGTAATTCAGAAAAAAGCT
i canFam3.chr2                 I 6736 C 0
s dasNov3.JH570393               1786174 76 -   2296528 TCCTAACTCTGAGAATCATTTTTCCTTGGAATGCAATTCAAATTAACATACAGTATTTGCAGTTCAGATAAAGAGT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e cebCap1.NW_016107851v1         1081442 590 +   1314817 I
e saiBol1.JH378105              64668850 255 -  72162052 I
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=13582.000000
s hg38.chr14_GL000009v2_random     47970 4 +    201709 TATA
s panTro5.chr9                  41727529 4 + 116767853 TATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076184 4 - 114479721 TATG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13524 4 +     53730 TATG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845049 4 + 122973662 TATG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538401 4 - 111343173 TATG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130429 4 - 111193037 TATG
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130409149 4 - 210400635 TATG
i calJac3.chr1                 C 0 C 0
s canFam3.chr2                  79155276 4 -  85426708 TGTG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1786250 4 -   2296528 TATA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e cebCap1.NW_016107851v1         1081442 590 +   1314817 I
e saiBol1.JH378105              64668850 255 -  72162052 I
e manLeu1.NW_012105442v1         1526655 0 -   1547936 C
e chlSab2.chr2                  66476036 0 +  90373283 C
e cerAty1.NW_012002921v1          426536 8 -    438202 I
e macNem1.NW_012012823v1          387681 0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=103984.000000
s hg38.chr14_GL000009v2_random     47974 33 +    201709 GCATCAGAATCCTTA-ATCATAGATTTCATTAtt
s panTro5.chr9                  41727533 33 + 116767853 GCATCAGAATCCTTA-ATTATAGAATTCATTAtt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076188 33 - 114479721 GCATCAGAATCCTTA-ATTATAGAATTCATTAtt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13528 33 +     53730 GCATCAGAATCCTTA-TTTACAGGATTCGTTAtt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845053 33 + 122973662 GCATCAGAATCCTTA-TTTACTGGATTCATTAtt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538405 33 - 111343173 GCATCAGAATCCTTA-TTTTCAGGATTCATTATT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130433 32 - 111193037 GCATT-GAATCCTTA-TTTACAGGATTCATTAtt
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130409153 33 - 210400635 GCATCACAATCTTTA-TTTACAGGATTCATTATT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669105 33 -  72162052 gtatcaTACTCCTTA-TTTACAGAACTCATTAGt
i saiBol1.JH378105             I 255 C 0
s canFam3.chr2                  79155280 33 -  85426708 GCATTAGAATCAGTA-ATTATAGATTCAATAATT
i canFam3.chr2                 C 0 I 2
s dasNov3.JH570393               1786254 34 -   2296528 GCATTAGAATCCGTATTTTATAAGTTTTATTAAT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e cebCap1.NW_016107851v1         1081442 590 +   1314817 I
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=24432.000000
s hg38.chr14_GL000009v2_random     48007 16 +    201709 ttg-----------------tgt--tgttttttg-a
s panTro5.chr9                  41727566 14 + 116767853 ttg-----------------tgt----ttttttg-a
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076221 15 - 114479721 ttg-----------------tgt----ttttttgta
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13561 14 +     53730 ttg-----------------tgt----ttttttg-a
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845086 14 + 122973662 ttg-----------------tgt----ttttttg-a
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538438 14 - 111343173 TTG-----------------TGG----ttttttg-a
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130465 14 - 111193037 ttg-----------------tgt----ctttttg-a
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130409186 31 - 210400635 TTGTGTGGGttttcttttttttt----ttttttg-a
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669138 14 -  72162052 ttg-----------------tct----ttttttg-a
i saiBol1.JH378105             C 0 C 0
s dasNov3.JH570393               1786288 18 -   2296528 TAG-----------------AGTACTATTTTCCA-A
i dasNov3.JH570393             C 0 I 472
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79155313  2 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e cebCap1.NW_016107851v1         1081442 590 +   1314817 I
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=660615.000000
s hg38.chr14_GL000009v2_random     48023 288 +    201709 tatagggtctttg-tctgttatccaggcagaagtgcagtgata-----ataattcactgcagccctgaactctgggtacaagccatccttttgcctcagtatcccaactagctgggtctacaggcatgaaccaccatgcccgggtaa----ttaaaaaaaat-----------------------------------------------tttt----ttttgtagagat-gggggtctcactatgttgctctggctgatcttaaattcctggcctcaagtgatctttctgccacagctttttaaagtgctaggattacaggcatgagccaccatgccTAATATAGAG--TGT
s panTro5.chr9                  41727580 287 + 116767853 gatagggtccttt-tctgtcatccaggcagaagtgcagtgata-----ataattcactgcagccctgaactct-ggtacaaaccatccttttgcctcagtatcccaactagctgggtctacaggcatgagccaccatgcccgggtaa----ttaaaaaaaaa-----------------------------------------------tttt----ttttctagagat-gggcgtctcactatgttgctctggctgatctcaaattcctggcctcaagtgatctttctgccacagctttttaaagtgctgggattaccgtcatgagccaccatgccTAGTATAGAG--TGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076236 285 - 114479721 gatagggtccttt-tctgtcatccaggcagaagtgcagtgata-----ataattcactgcagccctgaactct-ggtacaaaccatccttttgcctcagtatcccaactagctgggtctacaggcatgagccaccatgcccgggtaa----ttaaaaaaaa-------------------------------------------------ttt----ttgtctagagat-gggcatctcactatgttgctctggctgatctcaaattcctggcctcaagtgatctttctgccacagctttttaaagtgctaggattacaggcatgagccaccatgccTAGTATAGAG--TGT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13575 288 +     53730 gatacggtctttg-tctgtcatccaggcagaagtgcggtgatgtggtcataattc-ctgcagccctgaactctgggtacaagccatccttttgcctcagtctcccaactagctgggtctacaggcatgagccaccatgcccagctaa----tttaaaaaaa---------------------------------------------------a----ttttgtagacat-gggggtctcactatgttgctctggctgatctcaaattcctggcctcaagtgatcattctggcacaggcttttaaattgctacaattacaggaatgagccaccatgccTAGTATAGAG--TGT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845100 291 + 122973662 gatagggtcttca-tctgtcatccaggcagaagggcagtgatgtggtcataatccactgcagccctgaactctgggtacaagccatccttttgccgtagtctcccaactagctgggtttacaggcgtgagccaccatgcctggctaa----ttttaaaaaa-------------------------------------------------tat----ttttgtagagat-gggggtctcactatgttgctctggctaatctcaaattcctggcctcaagtgatctttctgccacagccttttaaagtgctaggattataggcatgagccaccatgccTAGTATAAAG--TAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538452 291 - 111343173 gatatggtctttg-tctgtcatccaggcagaagtgcagggatgtgttcataattcactgcagccctgaactctgggtacaagccatccttttgcctcaggctcccaactagctgggtctacaggcctgagccaccatgcctggctaattttttaaa-----------------------------------------------------attt----ttttgtggagat-gagtgtctcactgtgttgctctggctgatctcaaattcctggcctccagtgatctttctgccacagcctcctaaagtgctgggattacaggcacaagtcaccaggcctagccTAGAG--TAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130479 340 - 111193037 aatacggtctttg-tctgtcatccaggcagaagtgcagtggtgtggtcataattcactgcagccctgaactctgggtacaagccatccttttgcctcagtctcccaactagctggctctacatgcataagccaccatgcccagataa----ttaaaaataagtatatatatacacacacacacacacacacacacacacacacacacacatat----atatatagacat-gggagtatcactattttgctcttgctgatctcaaattcctggcctccagtgatctttctgccacagcctcctaaagtgctggaattaccggcatgagccaccATCCCTAGTATAGAG--TAT
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130409217 293 - 210400635 tatatggtcttta-tctgtcatccagggagaagtgtagtgatgttgtcataattcactgcaaacctgaactttgggtgcaagccattcttttgcctcagtctcttaacaagctgggtctacaggcatgagccattatgcctggctaa----tttttta---------------------------------------------------tttta---ttttgtaaagattggggatctcactatgttgctctggctgatctcaaatttttgacctcaagtgatctttctgccacagcctcctaaagtgctgggattacaggcatgagccaccatgcctagcATAGAGTATAT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669152 285 -  72162052 gatacggtctttcttttgtcattcaggcaggagtgcagtgg---tgtcctggctcactgcagtcttgaactgtagattcaagccatcctcctgcctcagtcttgcaactaactgaaactacaggcatgagccatcgtgtctggctaa----ttatt-----------------------------------------------------ttttagcctcttatagaaat----ggcctcactgtgttgctctggctggac-agaactcttggcctcaagtgatcactctgtcgctgcctcccaaagtgctggggttacaggcaagagccaccacacctgcccTAGAT--TGT
i saiBol1.JH378105             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79155313   2 -  85426708 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e dasNov3.JH570393               1786306 472 -   2296528 I
e cebCap1.NW_016107851v1         1081442 590 +   1314817 I
e manLeu1.NW_012105442v1         1526655   0 -   1547936 C
e chlSab2.chr2                  66476036   0 +  90373283 C
e cerAty1.NW_012002921v1          426536   8 -    438202 I
e macNem1.NW_012012823v1          387681   0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2249.000000
s hg38.chr14_GL000009v2_random     48311 8 +    201709 AATATCAC
s panTro5.chr9                  41727867 8 + 116767853 AATATTAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076521 8 - 114479721 AATATTAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13863 8 +     53730 TATATTAT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845391 8 + 122973662 TATATTAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538743 8 - 111343173 CATATTAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130819 8 - 111193037 TAAATTAT
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130409510 3 - 210400635 TAA-----
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669437 3 -  72162052 TAT-----
i saiBol1.JH378105             C 0 C 0
s canFam3.chr2                  79155315 8 -  85426708 AGTCTTAT
i canFam3.chr2                 I 2 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e dasNov3.JH570393               1786306 472 -   2296528 I
e cebCap1.NW_016107851v1         1081442 590 +   1314817 I
e manLeu1.NW_012105442v1         1526655 0 -   1547936 C
e chlSab2.chr2                  66476036 0 +  90373283 C
e cerAty1.NW_012002921v1          426536 8 -    438202 I
e macNem1.NW_012012823v1          387681 0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=183812.000000
s hg38.chr14_GL000009v2_random     48319 43 +    201709 TTTCAAAGTCTTATTCCTAGACCCATTTATTGACTTTGGCCTA
s panTro5.chr9                  41727875 43 + 116767853 TTTCAAAGTCTTATTCCTAGAGCCATGTATTGACTTTGGCCTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076529 43 - 114479721 TTTCAAAGTCTTATTCCTAGAGCCATTTATTGACTTTGGCCTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13871 43 +     53730 TTTCAAAGTCTTATTCTGAGAGCCATTTATTGACTTTGGCCTA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845399 43 + 122973662 TTTCAAAGTCTTATTCCTAGAGCCATTTATTGACTTTGGCCTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538751 43 - 111343173 TTTCAAAGTCTTATTCTGAGAGCCATTTATTGACTTTGGCCTA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130827 43 - 111193037 TTTCAAAGTCTTATTCCCAGAGCCATTTATTGACTTTGGCCTA
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130409513 43 - 210400635 TTTCAAAGTCTTATTCTGAGAGCCATTTATTGACTTTGGCCTA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669440 43 -  72162052 TTTCAAAGTCTTATTCTGAGAGCCATTTATTGTCTTTGGCCTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1082032 43 +   1314817 TTTCAAAGTCTTATTCTGAGAGCCATTTATTGTCTTTGGCCTA
i cebCap1.NW_016107851v1       I 590 C 0
s canFam3.chr2                  79155323 43 -  85426708 TTTCAAAGGCTTCTCTTAGGAAGCATTTATTTTCTCAGACCTA
i canFam3.chr2                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e otoGar3.GL873538              19682544 2756 -  27850971 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e dasNov3.JH570393               1786306 472 -   2296528 I
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=89759.000000
s hg38.chr14_GL000009v2_random     48362 22 +    201709 AATAACTCAATATGATATCTCT
s panTro5.chr9                  41727918 22 + 116767853 AATAACTCAATATGATATCTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076572 22 - 114479721 AATAACTCAATATGATATCTCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13914 21 +     53730 AATAACTCAATATGATA-CTCT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845442 22 + 122973662 AATAACTCAATATGATATCTCT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538794 20 - 111343173 AATAA--CAATATGATAGCTCT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130870 22 - 111193037 AATCACCCACTATGATATGTCT
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130409556 22 - 210400635 AATAACTCAATATGATATCTCT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669483 22 -  72162052 AATAACTCAACATGATGTCCCT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1082075 22 +   1314817 AATAACTCAACATGATGTCCTT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19685300 22 -  27850971 AATAACTGAATAGGATGTCTCT
i otoGar3.GL873538             I 2756 C 0
s canFam3.chr2                  79155366 22 -  85426708 CATAAGTCAATATGATATTACT
i canFam3.chr2                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e dasNov3.JH570393               1786306 472 -   2296528 I
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=39902.000000
s hg38.chr14_GL000009v2_random     48384 10 +    201709 GAAACTTTTT
s panTro5.chr9                  41727940 10 + 116767853 GAAACTTTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076594 10 - 114479721 GAAACTTTTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13935 10 +     53730 GAAACTTTTT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845464 10 + 122973662 GAAACTTTTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538814 10 - 111343173 GAAACATTTT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130892  9 - 111193037 GACAC-CGTT
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130409578 10 - 210400635 GAAACTTTTT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669505 10 -  72162052 AAATCTTCTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1082097 10 +   1314817 AAATCTTCTT
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19685322 10 -  27850971 AAAACTTCTT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79155388 10 -  85426708 AAAACTTCTT
i canFam3.chr2                 C 0 I 452
s dasNov3.JH570393               1786778 10 -   2296528 AAAACCGTTT
i dasNov3.JH570393             I 472 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=83552.000000
s hg38.chr14_GL000009v2_random     48394 39 +    201709 T---TGACATACTGTGGGGAATGATAATGAAGG-AAGGGGGTT----
s panTro5.chr9                  41727950 39 + 116767853 T---TGACATATTGTGGGGAATGATAATGAGGG-AAGGGGATT----
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076604 39 - 114479721 T---TGAAATATTGTGGGGAATGATAATGAGGG-AAGGGGATT----
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13945 39 +     53730 T---TGACATATTATGGGGAATGATAATGAGGG-AAGGTGGTT----
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845474 32 + 122973662 C---TGACATA---TGGGGAATGAT----AGGG-AAGGGGGTT----
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538824 38 - 111343173 T---TGACAAATTTTGGGGAGTGGCCATGAGGG-AAGGGG-TT----
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130901 38 - 111193037 T---TGACATATTATGGGGAGTGAGGATGAGGG-AGGGGG-TT----
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130409588 42 - 210400635 TTTTTGACAAATTATGGGGAATGATGATGAGGG-AGGGGTGTT----
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669515 37 -  72162052 T-----AGAAATTATTGGAAGTGATGATGAAGG-AAAGAGATT----
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1082107 37 +   1314817 T-----AGAAATTATTGGAAGTGATGATGAAGG-AAGGAGATT----
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19685332 38 -  27850971 T-----AGAAATTATAGGGAGTCATGATGGGGGTAAAAGTATG----
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1786788 41 -   2296528 -----TAGAAATTATGGGGTATTAAGTTTGGAG-GAGGGGAGGGGTA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79155398 452 -  85426708 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=13434.000000
s hg38.chr14_GL000009v2_random     48433 2 +    201709 AG
s panTro5.chr9                  41727989 2 + 116767853 AG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076643 2 - 114479721 AG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13984 2 +     53730 AG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845506 2 + 122973662 AG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538862 2 - 111343173 GG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111130939 2 - 111193037 AG
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130409630 2 - 210400635 AG
i calJac3.chr1                 C 0 I 973
s saiBol1.JH378105              64669552 2 -  72162052 AG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1082144 2 +   1314817 AG
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19685370 2 -  27850971 AG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79155850 2 -  85426708 AG
i canFam3.chr2                 I 452 C 0
s dasNov3.JH570393               1786829 2 -   2296528 AG
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e manLeu1.NW_012105442v1         1526655 0 -   1547936 C
e chlSab2.chr2                  66476036 0 +  90373283 C
e cerAty1.NW_012002921v1          426536 8 -    438202 I
e macNem1.NW_012012823v1          387681 0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=106143.000000
s hg38.chr14_GL000009v2_random     48435 25 +    201709 ACACTTTTTACTAGG-AGATAACTTT
s panTro5.chr9                  41727991 25 + 116767853 ACACTTTTTACTAGG-AGATAACTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076645 25 - 114479721 ACACTTTTTACTAGG-AGATAACTTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           13986 25 +     53730 ACACTTTTTACTAAG-AGATAACTTA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845508 25 + 122973662 ATACTTTTTACTAAG-AGATAACTTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538864 25 - 111343173 ACACTTTTCACTAAG-AGATCACTTT
i rheMac8.chr15                C 0 I 103
s macFas5.chr13                111130941 25 - 111193037 ACACTTTTCACTGAG-AGATCACTTA
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130410605 25 - 210400635 ACACTTTTTACTAAG-AGTTAACTTA
i calJac3.chr1                 I 973 C 0
s saiBol1.JH378105              64669554 26 -  72162052 AAACTTTCTACTAAGAAAAAAACTTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1082146 25 +   1314817 AAACTTTCTACTAAG-AAAAAACTTA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19685372 23 -  27850971 --ACATTTTACTAAG-AGGTTACTTA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79155852 25 -  85426708 AGAGTTTCTACTAAG-AGGTGACTTA
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1786831 25 -   2296528 AAACTTTCTGCCTTA-AGATGACTAC
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=793097.000000
s hg38.chr14_GL000009v2_random     48460 189 +    201709 GTGCCA-TTTAAGGAGGAACAA----AAATG---AATTATCAGAAAAATAAAAG----TAAAATTAAGTACAAAAATTCTGTGGCAAAGATGATGATAGTAAAGAATATATTTTTATGACTCATGGTAGCTTTAACTTTGTTCTTAAAATTCTGAGTAATTTAAGGGTTCACATTTGAAGAATCTGCTGCATTACAGATAA
s panTro5.chr9                  41728016 189 + 116767853 GTGCCA-TTTAAGGAGGAACAA----AAATA---AATTATCAGAAAAATAAAAG----TAAGATGAAGTACAAAAGTTCTGTGGCAAAGATGATGATAGTAAAGAATATATTTTTATGACTCATGGTAGCTTTAACATTGTTCTTAAAATTCTGAGTAATTTAAGGGTTAACATTTGAAGAATCTGATGCATTACTGATAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076670 189 - 114479721 GTGCCA-TTTAAGGAGGAACAA----AAATA---AATTATCAGAAAAATAAAAG----TAAGATGAAGTACAAAAGTTCTGTGGCAAAGATGATGATACTAAAGAATATATTTTTGTGACTCATGGTAGCTTTAACTTTGTTCTTAAAATTCTGAGTAATTTAAGGGATCACATTTGAAGAATCTGATGCATTACTGATAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           14011 189 +     53730 GTGCCA-TCTAAGGAGGAACAA----AAATG---AATTATCAGAAAAATAAAAG----TAAGATGAAGTGCAAAAGTTCTGTGGCAAAGATGATGATAGCAAATAATATATTTTTGTGACTCATGGTAGCTTTAACTTTGTTCTTAAAATTCTGAGTAATTTAAGGGTTCACATTTGAAGAATCCACTGCATTACAGATAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845533 188 + 122973662 GTGCCA-TTTAAGGAGGAACAA----AAATA---AATTATCAGAAAAATAAAAG----TAAGATGAAGTGC-AAAGTTCTGTGGCAAAGATGATGATAGTATATAATATATTTTTGTGACTCATGGTAGCTTTTACTTTGTTCTTAAAATTCTGAGTAATTTAAGGGTTCACATTTGAAGAATCTACTGCATTACAGATAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   538992 186 - 111343173 GTGCCG-TTTCAGGAGGAACAA----AAACG---AATCATCGGGAAAATAAAA-------AGATCAAGCGCAGATGTTCTGTGGCAAAGATGATGATAGTAGAGCGTGTATTTTTGTGACTCATGGTAGCTTTAACTTCGCTCTTAAAATTCTGAGTAATTTAAGGGTTCACATTTGAAGACTGTGCTACATTATTGATAA
i rheMac8.chr15                I 103 C 0
s macFas5.chr13                111130966 188 - 111193037 GTGCCA-TTGAAGGAGGAACAG----AAATG---TATTATCAGGAAAATAAAAG----TCAGATGAAGTGCAAAAGTTCTCTGG-AAAGATGATGACAGTAAAGCATATATTTTTGTGACTCATGGTAGCTTTAACTTTGCTCTTAAAATTCAGAGTAATTTAAGGCTTTACATTTGAAGAATGTACTGTGTTACAGATAA
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130410630 188 - 210400635 GTGCCA-TTTAAGGAGAAACAA----AAATA---AATTATCAGAAAAATAAAAG----TAAGATCAACTGCAAAAGTTCTGTGGCAAAGATGATGATAGTAAAGAATAT-TTTTTGTGACTCATGATAGCTTTAACTTTGTTCTTGAAATTCTAAGTAATTTAAGGGTTCACATTTGAAGAATCTACTATATTATAGGTAA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669580 187 -  72162052 GAGCCA-TTTCAGGAGAAACAA----AAACA-------ATCAGAAAAGTAAAAG--TCTAAGATCAAGTGCAGAAGTTCTGTGGCAAAGATGACGAAAGTAAAGAATAGATTATTGTGATTCTTGGTGGCTTTAACTTTGTTCTTGATTTTTTGAGTAATTTAAGGGTTCACAATTGAAGAATCTACTGCATTATAGATAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1082171 186 +   1314817 GAGCCA-TTTCAGGAGAAACAA----AACC--------ATCAGAAAAGTAAAAA--CCTAAGATCAAGTGCAAAAGTTCTGTGGCAAAGATGACGAAAGTAAATAATATATTATTGTGACTCTTGGTGGCTTTAACTTTGTTCTTGATTTTTTGAGTAATTTAACGGTTCACAATTGAAGCATCTACTGCATTATAGATAA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19685395 179 -  27850971 GAGACATTTTAAGGAGGAAAGATGTGAAACA---AACAA--AGCAAAATAAAAG--TCTAAGATCAACCACAAATGTT-GGTATCAAAGATGGTG-----AAAAAATATATTTTTGTGACTCCTAGTCACCT-------GTTCTTGATTTTCTGAGTAATTTAAGGA-CCACATTTG-AGAATCTATTACAATATATGTAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79155878 192 -  85426708 AGGTAT-TTTATGGAGGAAATATCC-AAAGC---AGTCAT-AGAAAAATAAAAG--CATAAAATGAAGTACAAATGTTGTGTGGCAAAGACAATGATAGCAGA-AATCTATTTTAGTAACTCCTAGTGGTTTTAACTTTGTTCTTAATTTTCTAAGTTCTTCAAGGTTTCACATTTTAAGACTCTACTACAATATAGATTA
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1786856 183 -   2296528 -AGTCA-TTTTAAGAAGGAAAG----ACATATGAAATAATCAGAAAAATAAAAGACTATAAAATCTAGTACAAAAGTTGTGTGGAAAAGAT---GAGAGTGAAGAACTTATTTC---------TTGTATTTTTAACCTTGTTCTTGATTTTCTGAGTAATTCAAGTGTCCTTATTCTAGGAATCTACTAAAGTACAAATAA
i dasNov3.JH570393             C 0 M 332
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e manLeu1.NW_012105442v1         1526655   0 -   1547936 C
e chlSab2.chr2                  66476036   0 +  90373283 C
e cerAty1.NW_012002921v1          426536   8 -    438202 I
e macNem1.NW_012012823v1          387681   0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=82953.000000
s hg38.chr14_GL000009v2_random     48649 17 +    201709 CATTTTATTGCAAGTAA
s panTro5.chr9                  41728205 17 + 116767853 CATTTTATTGTAAGTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076859 17 - 114479721 CATTTTATTACAAGTGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           14200 17 +     53730 CATTTTATTGCAAGTAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845721 17 + 122973662 CATTTTATTGCAAGTAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   539178 17 - 111343173 CATGTTATTGCAAGTAA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111131154 17 - 111193037 CATTTTATTGCAAGTAA
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130410818 17 - 210400635 TATTTTATTGCAAGTAA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669767 17 -  72162052 CATGTTATTGTAAGTAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1082357 17 +   1314817 CATGTTATTGCAAGTAA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19685574 17 -  27850971 TGTTTTATTGCAACTGA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79156070 17 -  85426708 TATTTTATTGCAAATGA
i canFam3.chr2                 C 0 I 143
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e dasNov3.JH570393               1787039 332 -   2296528 M
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=17931.000000
s hg38.chr14_GL000009v2_random     48666 5 +    201709 ATGCA
s panTro5.chr9                  41728222 5 + 116767853 ATGCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076876 5 - 114479721 ATGCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           14217 5 +     53730 ATGCA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845738 5 + 122973662 ATGCA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   539195 5 - 111343173 ATGCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111131171 5 - 111193037 ATACT
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130410835 5 - 210400635 TTGCA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669784 5 -  72162052 ATGTA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1082374 5 +   1314817 ATGTA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19685591 5 -  27850971 ACTTA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79156230 5 -  85426708 atgca
i canFam3.chr2                 I 143 I 157
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e dasNov3.JH570393               1787039 332 -   2296528 M
e manLeu1.NW_012105442v1         1526655 0 -   1547936 C
e chlSab2.chr2                  66476036 0 +  90373283 C
e cerAty1.NW_012002921v1          426536 8 -    438202 I
e macNem1.NW_012012823v1          387681 0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=21605.000000
s hg38.chr14_GL000009v2_random     48671 5 +    201709 TTTCA
s panTro5.chr9                  41728227 5 + 116767853 TTTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076881 5 - 114479721 TTTTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           14222 5 +     53730 TTTCA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845743 5 + 122973662 TTTCA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   539200 5 - 111343173 TTTCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111131176 5 - 111193037 TTTCA
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130410840 5 - 210400635 TTTCT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669789 5 -  72162052 TTTCA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1082379 5 +   1314817 TTTCA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19685596 5 -  27850971 TTTCT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79156392 5 -  85426708 TTTAA
i canFam3.chr2                 I 157 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e dasNov3.JH570393               1787039 332 -   2296528 M
e manLeu1.NW_012105442v1         1526655 0 -   1547936 C
e chlSab2.chr2                  66476036 0 +  90373283 C
e cerAty1.NW_012002921v1          426536 8 -    438202 I
e macNem1.NW_012012823v1          387681 0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2027134.000000
s hg38.chr14_GL000009v2_random     48676 423 +    201709 AAAT----TTGCTATTGGTTTTGTATTAGATTATTCTCAGCCTA----CTTCATT----ATCAAGTTA----TACTATTTTATTCTTGCAGTTTGATGATCTTATGGCGGAGAAGGAAGCTGTATCTTCAAAATGTGTCAATTTGGCTAAAGAGAATCAAGTTTTTCAACAGGAGTTATTATCTATGAAAAAAGTACAACAGGAATGTGAAAAACTTGAGGAAGATAAAAAGATGTTGGAAGAAGAAATATTAAATCTTAAGACACATATGGAAAACAGTATGGTAGAACTTAGTAAACTACAAGAATATAAATCAGAGCTAGATGAAAGGGCAATGCAGG---CAGTAGAAAAATTAGAAGAAATCCA------TTTACAGGTGAG---TTGTTTAAATCAGGTAAGTTTACTTGTAATGTGCTTTCATTTATTTCACTGCAAATTATAT
s panTro5.chr9                  41728232 417 + 116767853 AAAT----TTGCTATTGGTTTTGTATTAGATTATTCTCAGCCTA----CTTCATT----ATCAAGTTA----TACTATTTTATTTATGCAGTTTGATGATCTTATGGCAGAGGAGGAAGCTGTATCTTCAAAATGTGTCAATTTGTCTAAAGACAATCAAGTTATCCAACAGGAGTTATTATCTATGAAAAAAGTACAACAAGAATGTGAAAAACTTGAGGAGAATCAAAAGATGTTGGAAGAAGAAATATTAAATCTTAAGACACATATGGAAAACAGTATGGTAGAACTTCATAAACTACAAG------AATCAGAGCTAGATGAAAGGGCAATGCAGG---CAGTAGAAAAATTAAAAGAAATCCA------TTTACAGGTTAC---TTGTTTAAATCAGGTAAGTTTACCTGTAATGTGCTTTCATTTAGTTCACTGCAAATTATAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96076886 417 - 114479721 AAAT----TTGCTATTGGTTTTGTATTAGATTATTCTCAGCCTA----TTTCATT----ATCAAGCTA----TACTATTTTATTCATGCAGTTTGATGATCTTATGGCAGAGGAGGAAGCTGTATCTTCAAAATGTGTCAATTTGTCTAAAGACAATCAAGTTATCCAACAGGAGTTATTATCTATGAAAAAAGTACAACAAGAATGTGAAAAACTTGAGGAGAATCAAAAGATGTTGGAAGAAGAAATATTAAATCTTAAGACACATATGGAAAACAGTATGGTAGAACTTAGTAAACTACAAG------AATCAGAGCTAGATGAAAGGGCAATGCAGG---CAGTAGAAAAATTAGAAGAAATCCA------TTTACAGGTTAC---TTGTTTAAATCAGGTAAGTTTACCTGTAATGTGCTTTCATTTAGTTCACTGCAAATTATAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           14227 422 +     53730 AAAT----TTGCTATTGGTTTTGTATTAGATTATTCTCAGCCTA----CTTCATT----ATCAAGCTA----TATTATTTTATTCATGCAGTTTGATGATCTTACGGCAGAGAAGGAAGCTTTATCTTCAAAATGTGTCAATTTGGCTAAAGACAATCAAGTTCTTCAACAGGAGTTTTTATCTATGAAAAAAGTACAACAGGAATGTGAAAAACTTGAGGAGGATAAAAAGATGTTGAAAGAAGAAATATTAAATCTTAAGACACATATGGAAAACAATAGGGTAGAACTTAGTAAACTACAAGAATATAAATTGGAGCTAGATGAAAAGGCAATGCAGG---CAGTAGAAAAATTAGAAGAAATCCA------TTTACAGGTTAG---TTTTTTAAATCAGGTAAGTTTATCTGTAATGTGCTTTCATTTATTTCACCGCAAATTATA-
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40845748 423 + 122973662 AAAT----TTGCTATTGGTTTCGTATTAGATTATTCTCAGCCTA----CTTCATT----ATCAAGCTA----TACTATTTTATTCATGCAGTTTGATGATCTTACAGCAGAGAAGGAAGCTGTATCTTCAAAATGTGTCAATTTGGCTAAAGACAATCAAGTTCTTCAACAGGAGTTATTATCTATGAAAAAAGTACAACAGGAATGTGAAAAACTTGAGGAGGATAAAAAGATGTTGGAAGAAGAAATATTAAATCTTAAGACACATATGGAAAACAATATGGTAAAACTTAGTAAACTACAAGAATATAAATCAGAGCTAGATGAAAGGGCAATGCAGA---CAGTAGAAAAATTATAAGAAATCCA------TTTACAGGTTAG---TTTTTTAAATCAGGTAAGTTTATCTGTAATGTACTTTCATTTATTTCACTGCAAATTATAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   539205 423 - 111343173 AAAT----TTGCTATTGGTTTTGTATTAGATTATTCGCAGCCTA----CTTCCCT----ATCAAGCTC----TATTATTTTATTCATGCAGTTCGATGATCTTATGGCCGAGAAGGAAGCTGTATCTTCAAAATGTGTCAATTTGGCTAAAGACAATCAAGTTCTTCAACAAGAGTTTTTATCTATGAGAAAAATACAAGAGAAATGTGAAAAACTTGAGGAGGATAAAAAGATGTTGGAAGAAGAAGTATTAACTCTTAAGACACATATGGAAAACAATATGGTAGAACTTGGTAAAGCACAAGAATATAAATCGGAGCTAGATGAAAAGACAATGCAGA---TAATAGAAAAATTAGAAGAAATCCA------TTTACAGGTTAG---TTTTTAAAGTCAGGTAAGTTTATCTGTAATGTGCTTTCATTTGTTTCACTGCAAATTATAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111131181 417 - 111193037 AAAT----TTGCTATTGGTTttgtattagattattcttagtcta----------t----atcaaacta----tattattttatTCATGCAGTTTGATGATCTTATGGCAGAGAAGGAAGCTGTATCTTCAAAATGTGTCAGTTTGGTGAAAGACAATCAAGTTCTTCAACAGGAGTTATTATCTATGAGAAAAGTACAACAGGAATGTGAAAAACTTGAGGAGGATAAAAAGATGTTGAAAGAACAAATATTAAATCTTAAGACACATATGGAAAACAATATGGTAGAACTTGGCAAAGTACAAGAATATAAATCAGAGCTAGATAAAAAGGCAATGCAGG---CAATAGAAAAATTAGAAGAAATCCA------TTTACAGGTTAG---TTTTTTAAATCAGGTAAGTTTATCTGTAATGTGCTTTCATTTATTTCACTGCAAACTGTAT
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130410845 423 - 210400635 AAAT----TTGCTATTGGTTTTGTATTAAATCATTCTCAGACTA----CTTCATT----ATCAAGCTA----TATTATTTTATTCATGCAGCTTGATGATCTTACAGCAGAGGAGGAAGCTCTGTCTTCAAAATGTATCAATTTGGCTAAAGACAATCAAGTTATTCAACAGGAGTTATTATCTATGAAAAAAGTACAACAGAAACGTGAAAAACTTCAAGAGGATAAAAAGAAGTTGGAAGAAGAAATATTAAATCTTAAGACACATATGGAAAAAAATATGATAGAAGTTGGTAAAGTACAAGAATATAAATCGGAGCTGGAAGGAAGGGTAATGCAAG---CAATAAAAAAATTAGAGGAAATTCA------TTTACAGGTTAG---TTTTTAAAATCAGGTAAGTTTGTCTGTAATGTGCTTTCATTTATTTCACTGCAAATTATAT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64669794 426 -  72162052 AAAT----TTGTTATTGGTTTTGTATTAAAATATTACCAGCCTA----CTTCATT----ATCAAACTG----TATTATTTTATTCATGCAGTTTGATGATCTTACAGAAGAGCTGGGAGCTGTATCTTCAAAATGTCTATATTTGGCTAAAAACAATCAAGTTATTCAACAAGAGTTAAACTCTATGAAAGACGTACAAAAGAAATATGAAAAACTTGAGGAGGTTAACAAAACATTGGAACAAGAAGTAGTAAATCTTAAGACACATATAGAAAAAAATATGGTAGACTTTAGTGAATTAGAAGAATATAAATTGCAGATAGAAGAAAGAACAAGACAGG---AAAGAAAAAAATTAGAAGAAATCAG------TTTACAGGTTAGTGTTTTTTTTAATCAGGTAGGTTTATCTGTAATGTactttcatttattttcctgcaaattacat
i saiBol1.JH378105             C 0 I 9
s cebCap1.NW_016107851v1         1082384 425 +   1314817 AAAT----TTGTTATTGGTTTTGTATTAAAATATTATCAGCCTA----CTTCATT----ATCAAACTG----TATTATTTTATTCATGCAGTTTGATGATCTTACAGAAGAGCTGGGAGCTGTATCTTCAAAATGTCTATATTTGGCTAAAAACAATCAAGTTATTCAACAGGAGTTAATCTCTATGAAAGATGTACAACAGAAATATGAAAAATTGGAGGAGGTTAACAAAACGTTGGAACAAGAAGTAGTGAATCTTAAGACACATAAAGAAAAAAATATGGTAGACCTTAGTGAATTAGAAGAATATAAATTGCAGATAGAAGAAAGAACAAGACAGG---AAAGAAAAAAATTAGAAGAAATCGG------TTTACAGGTTAG-TTTTTTGTTAATCGGGTAGGTTTATCTGTAATGTGCTTTCATTTATTTCCCTGCAAATtatat
i cebCap1.NW_016107851v1       C 0 I 272
s otoGar3.GL873538              19685601 408 -  27850971 AAAT----T---TATTGGTTTTGTGTTAGAATGTTCTCTGCCTA----CTTCCTTCATAACCAAACTG----CATTATTTTGTTCATGTAGATTGATGATCTTACAGCACAACTGGAAAGTTCATCTTCAAAGTGTCTACATCTAGATGCAAAGAATCAAATTCTTCAAGAGGAGTTATTATCTATGAAAACAATGCAAAAGAAATGTGAGAAACTACAGAAGAATAAAAAGAAGTTGGAACAAGAAGTGGTAAACCTCAAAAGTCAAATAGAAATGAATATTGTAGAACGTGGTCAAGTAGAACAGTATAAACAAGAGATTGAAGAAAGAGCAAGACAGGATATAGTAGAAAAATTAAAAGAAGTCAATCTATTTTTACAGGTTAG---TTTTTAAA--------------TCTATA----------ATTCATTTCACTGCAAATTATG-
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79156397 429 -  85426708 AAATAATGTTGGTTATAGTTTTTAATTAAACTATTTTC-----A----CTCCACT----TCCAAACTG----TATTGTTTTATTCATGCAGATTGATGATCTTACAGCAAAACTGGAAACTGAATCTTCAAGGTGTCTACACCTGGACGCAAAAAATCAAGTTCTTCAACAAGAGTTATTATCTATGAAAGCAACAGAGAGGAAATGTGAAAAACTAGAAAAGAATAAAAAGAAGTTGGAACAAAAAGTAGTAAACCTCAGAAGTCATTTAGAAGTCAATGTGGTAGAACGCAGTCAAGTAGAAAAGTATAAACGGGAGATTGAAGAGAGAGCAAGATTGGTTATAGTAGAAAAATTAAAAGAAGTCAATCTATTTTTACAGGttaa---tttattaattta--ttaatCTGTATGTGATATGCTTGCATTTATTTCACTACAAATTACAC
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1787372 425 -   2296528 AAAT----TTGATATTGGTTT-GAGTTAGACGGTTCTCAGCTTACTTCCTTCATT----ACCAAACTGTGTTTATTATTTTATTCATGCAGATTGATGATCTTACAGCAAAACTTGAAACCACATCTTCAAAATGTCTACATCTGGATGCAAATAATCAGGTTCTTCAACAGGAGTTACTATCTATGAAAGCTATAAAAAAGAAATGTGAAAAACTAGAGAAGAATAAAAAGAAGTTGGAACAAGAAGTAGTAAACCTCAAAAGTCATGTAGAAATTAATATGATAGAGCATGGTCAAGTAGAACAGTATAAACGGGAAATTGAAGAAAGAGCAAGATGGGATATAGTGGAAAAATTAAAAGAAGTCAATCTATTTTTGCAGGTTAA---TTT--------------ATTTATCTGTGATGTGCTTTGATTTGTTTCATTGTAAATCTTAT
i dasNov3.JH570393             M 332 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e manLeu1.NW_012105442v1         1526655   0 -   1547936 C
e chlSab2.chr2                  66476036   0 +  90373283 C
e cerAty1.NW_012002921v1          426536   8 -    438202 I
e macNem1.NW_012012823v1          387681   0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=10004.000000
s hg38.chr14_GL000009v2_random     49099 22 +    201709 TTTGGAGA-------TATATATAT--ATATA
s panTro5.chr9                  41728649 25 + 116767853 TTTGGAGATT----Ttatatatat--atata
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96077303 22 - 114479721 TTTGGAGa-------tatatatat--atata
i panPan2.chr13                C 0 I 1773
s gorGor5.CYUI01002030v1           14649 21 +     53730 TTTGGATA-------TGTATATAT---TATG
i gorGor5.CYUI01002030v1       C 0 I 7
s nomLeu3.chr1a                 40846171 16 + 122973662 TTTGGATA-------CGTATATA--------
i nomLeu3.chr1a                C 0 I 12
s rheMac8.chr15                   539628 21 - 111343173 TTTGGATA-------TGTATATAT---TGTG
i rheMac8.chr15                C 0 I 7
s macFas5.chr13                111131598 21 - 111193037 TTTGGATA-------TGTATATAT---TGTG
i macFas5.chr13                C 0 I 7
s calJac3.chr1                 130411268 17 - 210400635 TTTGGATA-------TGTATACAT-------
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64670229 18 -  72162052 ataaaata-------ta-atatataa-----
i saiBol1.JH378105             I 9 I 175
s otoGar3.GL873538              19686009 24 -  27850971 TTTGGATATGCACATTGTATGTAT-------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79156826 23 -  85426708 TTTGGTTATATGCATTGTGTATG--------
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1787797 23 -   2296528 TTTGGATATATACATTGTATGCA--------
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e cebCap1.NW_016107851v1         1082809 272 +   1314817 I
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=-155.000000
s hg38.chr14_GL000009v2_random     49121 1 +    201709 A
s panTro5.chr9                  41728674 1 + 116767853 t
i panTro5.chr9                 C 0 C 0
s dasNov3.JH570393               1787820 1 -   2296528 T
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130411285 0 - 210400635 C
e rheMac8.chr15                   539649 7 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e canFam3.chr2                  79156849 1 -  85426708 I
e otoGar3.GL873538              19686033 0 -  27850971 C
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e cebCap1.NW_016107851v1         1082809 272 +   1314817 I
e saiBol1.JH378105              64670247 175 -  72162052 I
e manLeu1.NW_012105442v1         1526655 0 -   1547936 C
e chlSab2.chr2                  66476036 0 +  90373283 C
e cerAty1.NW_012002921v1          426536 8 -    438202 I
e macNem1.NW_012012823v1          387681 0 +    434444 C
e macFas5.chr13                111131619 7 - 111193037 I
e nomLeu3.chr1a                 40846187 12 + 122973662 I
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I
e gorGor5.CYUI01002030v1           14670 7 +     53730 I

a score=-4039.000000
s hg38.chr14_GL000009v2_random     49122 6 +    201709 AGAGAT-
s panTro5.chr9                  41728675 6 + 116767853 atatat-
i panTro5.chr9                 C 0 I 13
s calJac3.chr1                 130411285 5 - 210400635 -TGTGT-
i calJac3.chr1                 C 0 I 6
s otoGar3.GL873538              19686033 1 -  27850971 -----T-
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79156850 5 -  85426708 -TGCCT-
i canFam3.chr2                 I 1 I 1
s dasNov3.JH570393               1787821 6 -   2296528 -TTCCTC
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   539649 7 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e cebCap1.NW_016107851v1         1082809 272 +   1314817 I
e saiBol1.JH378105              64670247 175 -  72162052 I
e manLeu1.NW_012105442v1         1526655 0 -   1547936 C
e chlSab2.chr2                  66476036 0 +  90373283 C
e cerAty1.NW_012002921v1          426536 8 -    438202 I
e macNem1.NW_012012823v1          387681 0 +    434444 C
e macFas5.chr13                111131619 7 - 111193037 I
e nomLeu3.chr1a                 40846187 12 + 122973662 I
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I
e gorGor5.CYUI01002030v1           14670 7 +     53730 I

a score=121400.000000
s hg38.chr14_GL000009v2_random     49128 37 +    201709 TGCCTCTCTTGTAGCAATCT-GCTTTGTAGAGTTCTAG
s panTro5.chr9                  41728694 37 + 116767853 tgcctctcttgtagcaatct-gcttTGTAGAGTTGTAG
i panTro5.chr9                 I 13 C 0
s gorGor5.CYUI01002030v1           14677 37 +     53730 TGCCTCTCTTGTAGCAATTT-GCTTTGTAGAGTTCTAG
i gorGor5.CYUI01002030v1       I 7 I 1
s nomLeu3.chr1a                 40846199 37 + 122973662 TGCCTCTCTTGTAGCAATTT-GCTTTGTAGAGTTCTAG
i nomLeu3.chr1a                I 12 I 1
s rheMac8.chr15                   539656 37 - 111343173 TGCCTCTCTTACAGCAATTT-CCTTTGTAGGGTTCTAG
i rheMac8.chr15                I 7 C 0
s macFas5.chr13                111131626 37 - 111193037 TGCCTCTCTTGTAGCAATTT-GCTTTGTAGAGTTCTAG
i macFas5.chr13                I 7 C 0
s calJac3.chr1                 130411296 37 - 210400635 TGCCTCTTTTATAGCAATTT-GCTTTGTAAAGTTCTGG
i calJac3.chr1                 I 6 I 2
s saiBol1.JH378105              64670422 37 -  72162052 tgctcctcttataggaaagt-gttttgtAAAGTTTTAG
i saiBol1.JH378105             I 175 I 2
s otoGar3.GL873538              19686034 38 -  27850971 TCCTTTACTTCTAGCAAGGGAAATTTGTAGATTTCTGG
i otoGar3.GL873538             C 0 I 1
s canFam3.chr2                  79156856 37 -  85426708 TGCTTCCTTTATAGCAATCT-GTTTGGTAGATTTCTGG
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1787827 37 -   2296528 TACTTCCCTTATGCCAATTT-GTTTTGTAGGTTTCTAG
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6435468 200 -   6597006 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e cebCap1.NW_016107851v1         1082809 272 +   1314817 I
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=46252.000000
s hg38.chr14_GL000009v2_random     49165 22 +    201709 --AAAAAAA-TG-GTATCTGTTTTTT
s panTro5.chr9                  41728731 22 + 116767853 --AAAAAAA-TG-GCATCTGTTTTTT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           14715 22 +     53730 --AAAAAAA-TG-GCATCTGTTTTTT
i gorGor5.CYUI01002030v1       I 1 C 0
s nomLeu3.chr1a                 40846237 22 + 122973662 --AAAAAGA-TG-GCATCTGTTTTTT
i nomLeu3.chr1a                I 1 C 0
s rheMac8.chr15                   539693 21 - 111343173 --AAAAAAAGTG-GCATC--TTTTTT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111131663 22 - 111193037 --AAAAAAA-TG-GCATCTGTTTTTT
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130411335 23 - 210400635 --AAAATGG-CATTTGtttttttttt
i calJac3.chr1                 I 2 C 0
s saiBol1.JH378105              64670461 22 -  72162052 --AAAAAAG-TG-GTGCCTGTTTCTC
i saiBol1.JH378105             I 2 C 0
s aotNan1.NW_018488791v1         6435668 22 -   6597006 --AAAAAAG-TG-GTGCCTGTTTGTC
i aotNan1.NW_018488791v1       I 200 C 0
s otoGar3.GL873538              19686073 22 -  27850971 --AGGAAGG-TA-GCATCTATTTCTC
i otoGar3.GL873538             I 1 C 0
s canFam3.chr2                  79156893 15 -  85426708 ----------AG-GCATTCGTTCCTC
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1787864 24 -   2296528 AAGGATAGG-TG-TCACTTGTGTCTC
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e cebCap1.NW_016107851v1         1082809 272 +   1314817 I
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=108390.000000
s hg38.chr14_GL000009v2_random     49187 21 +    201709 CTTTTAAATATTTAAATTTCC
s panTro5.chr9                  41728753 21 + 116767853 CTTTTAAATATTTAAATTTCC
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           14737 21 +     53730 CTTTTAAATATTTACATTTCC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40846259 21 + 122973662 CTTCTAAATATTTAAATTTCC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   539714 21 - 111343173 CTTTTAAATATTTAAATTTCC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111131685 21 - 111193037 CTTTTAAACATTTAAATTTCC
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130411358 21 - 210400635 tttttagatatttaaattccc
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64670483 21 -  72162052 Cttttaaatattttaattttc
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1083081 21 +   1314817 CTTTTAAATATTTTAATTTCC
i cebCap1.NW_016107851v1       I 272 C 0
s aotNan1.NW_018488791v1         6435690 21 -   6597006 CTTTTAAATATTTTAATTTCC
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19686095 21 -  27850971 TTTTTCAATATTTCAGTTTCC
i otoGar3.GL873538             C 0 I 286
s canFam3.chr2                  79156908 21 -  85426708 CCTGTAAAGATTTCTGTTTTC
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1787888 21 -   2296528 ACTTTAAATATTTTCATTTCC
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=132948.000000
s hg38.chr14_GL000009v2_random     49208 30 +    201709 ATTATTATTATAACAAAATCAATCTTTCAG
s panTro5.chr9                  41728774 27 + 116767853 ---ATTATTATAAGAAAATGAATCTTTCAG
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           14758 30 +     53730 ATTATTATTATAACAAAATCAATCTTTCAG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40846280 30 + 122973662 ATTATTATTATAATAAAATCAATCTTTCAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   539735 30 - 111343173 ATTATTTTTATAACAAAATTCATCTTTCAA
i rheMac8.chr15                C 0 I 307
s macFas5.chr13                111131706 30 - 111193037 ATTATTACTATAACAAGATCAATCTTTCAG
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130411379 29 - 210400635 attattattataaaaaaatCAGTC-TTCAG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64670504 30 -  72162052 attattattataaCTAAATTGATCTTTCAG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1083102 30 +   1314817 ATTATTATTATAACTAAATTGATCTTTCAG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6435711 30 -   6597006 ATTATTATTGTAACTAAATTGATCTTTCAG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19686402 30 -  27850971 ATCATTTTTATAACTAAATTGATCTTACAG
i otoGar3.GL873538             I 286 C 0
s canFam3.chr2                  79156929 29 -  85426708 ATCATTATTCTCACTAAATTGATCTCCTG-
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1787909 30 -   2296528 ACCATTATTATCACTAAACTGATCTTTGGG
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e manLeu1.NW_012105442v1         1526655  0 -   1547936 C
e chlSab2.chr2                  66476036  0 +  90373283 C
e cerAty1.NW_012002921v1          426536  8 -    438202 I
e macNem1.NW_012012823v1          387681  0 +    434444 C
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=40557.000000
s hg38.chr14_GL000009v2_random     49238 8 +    201709 AGTAATGA
s panTro5.chr9                  41728801 8 + 116767853 AGTAATGA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           14788 8 +     53730 AGTAATGA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40846310 8 + 122973662 AGTAATGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   540072 8 - 111343173 aGTAATGA
i rheMac8.chr15                I 307 C 0
s macFas5.chr13                111131736 8 - 111193037 AGTAATGA
i macFas5.chr13                C 0 C 0
s calJac3.chr1                 130411408 8 - 210400635 AGTGATGA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64670534 8 -  72162052 AGTAATGA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1083132 8 +   1314817 AGTAATGA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6435741 8 -   6597006 AGTAATGA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19686432 8 -  27850971 AATAATGA
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1787939 8 -   2296528 AATAAAGT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79156958 0 -  85426708 C
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e manLeu1.NW_012105442v1         1526655 0 -   1547936 C
e chlSab2.chr2                  66476036 0 +  90373283 C
e cerAty1.NW_012002921v1          426536 8 -    438202 I
e macNem1.NW_012012823v1          387681 0 +    434444 C
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=62177.000000
s hg38.chr14_GL000009v2_random     49246 8 +    201709 TTCTCATT
s panTro5.chr9                  41728809 8 + 116767853 TTCTCATT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           14796 8 +     53730 TTCTCACT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40846318 8 + 122973662 TTCTCACT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   540080 8 - 111343173 TTCTCACT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111131744 8 - 111193037 TTCTCACT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          387681 8 +    434444 ttctcact
i macNem1.NW_012012823v1       C 0 C 0
s chlSab2.chr2                  66476036 8 +  90373283 TTCTCACT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1526655 8 -   1547936 ttctcact
i manLeu1.NW_012105442v1       C 0 C 0
s calJac3.chr1                 130411416 8 - 210400635 TTCTCACT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64670542 8 -  72162052 TTTTCATT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1083140 8 +   1314817 TTTTCATT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6435749 8 -   6597006 TTTTCATT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19686440 8 -  27850971 TTCATATT
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1787947 8 -   2296528 TTCTCATT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79156958 0 -  85426708 C
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e cerAty1.NW_012002921v1          426536 8 -    438202 I
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=438326.000000
s hg38.chr14_GL000009v2_random     49254 63 +    201709 ATGGAGTCATTTGATGATTAAGACCAGT--TGGCATAGG-----------------------AAAAAATTGTGTTTTAGAAATTATGT
s panTro5.chr9                  41728817 63 + 116767853 ATGGAGTCATTTGATGATTAAGACCAGT--TGGCATAGG-----------------------AAAAAATTGTGATTTAGAAATTATGT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           14804 63 +     53730 GTGGAGTCATTTGATGATTAAGATCAGT--TGGCATAAG-----------------------AAACAATTGTGATTTCAAAATTATGT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40846326 63 + 122973662 ATGGAGTCATTTGATGATTAAGACCAGT--TGGCATAAG-----------------------AAAAAGTTGTGATTTAGAAATTATGT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   540088 63 - 111343173 ATAGAGTCATTTCAATATTAAGACCAGT--TGGCATAAG-----------------------AGAAAACTGTGATTTAGAAATTATGT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111131752 63 - 111193037 ATGGAGTCATTTGATGATTAAGACCAGT--TGGCATAAG-----------------------AAAAAATTGTGATTTAGAGATTATGT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          387689 63 +    434444 atGGAGTCATTTGATGATTAAGACCAGT--TGGCATAAG-----------------------AAAAACTTGTGATTTAGAAATCATGT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          426544 63 -    438202 ATGGAGTCATTTGATGATTAAGACCAGT--TGGCATAAG-----------------------AAAAACTTGTGATTTAGAAATCATGT
i cerAty1.NW_012002921v1       I 8 C 0
s chlSab2.chr2                  66476044 63 +  90373283 ATGGAGTCATTTGATGATTAAGACCAGT--TGGCATAAG-----------------------AAAAACTTGTGATTTGGAAATCATGT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1526663 63 -   1547936 atGGAGTCATTTGATGATTAAGACCAGT--TGGCATAAG-----------------------AAAAACTTGTGATTTAGAAATCATGT
i manLeu1.NW_012105442v1       C 0 C 0
s calJac3.chr1                 130411424 59 - 210400635 ATA--GTCTTTTGAT--TCAAGACCAGT--TGGCCTAAG-----------------------TGAAAACTGTGATTTAGAAATGTTGT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64670550 74 -  72162052 CTAGTGTCACTTAGTTATTAAGGCCAGT--TGGCATAAG-----ACTATTAG------AAAAAGAAAATTGTAATTTA-AAATTACAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1083148 74 +   1314817 CTAGTGTCACTTAGTTATTAAGGCCAGT--TGGCATAAG-----ACTATTAG------AAAAAGAAAATTGTAATTTA-AAATTATAT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6435757 74 -   6597006 CTAGTGTCACTTAGTTATTAAGGCCAGT--TGGCATAAG-----ACTATTAG------AAAAAGAAAATTGTAATTTA-AAATTATAT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19686448 82 -  27850971 AGAGAATCATTTGATTATTAAGACCAGT--CAGCATAAAACAAGACTATTAGG----AAAAGAAAAAGCTGTGACTTAGAAATTATAG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79156958 84 -  85426708 --AGAATCACTTTATTTTTAAGACCAGT--TTGTATGAATCAAGACTATTAAGAGGAAAAGAAAAAAATTGTGATTTAAAACTTTTAC
i canFam3.chr2                 C 0 I 318
s dasNov3.JH570393               1787955 65 -   2296528 ATAGAATCACCTGATTAT-AAGGCCATTAATGGGAAAAG----------------------AAGAAAATGATGATTTAAAAATTATAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=221499.000000
s hg38.chr14_GL000009v2_random     49317 32 +    201709 GATAATTATGAATTGGT-CTTAAGCTACAGTGT
s panTro5.chr9                  41728880 32 + 116767853 GATACTTTTGAATTGGT-CTTAAGCTACATTGT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           14867 32 +     53730 GATACTTTTGAATTGGT-CTTAAGCTACATTGT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40846389 32 + 122973662 GATACTTTTGAATTGGT-CTTAAGCTACATTGT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   540151 32 - 111343173 GATACTTTTGAATTGGT-CTTAAGCTATGTTGT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111131815 32 - 111193037 GATACTTTTAAATTGGT-CTTAAGCTACATTGT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          387752 31 +    434444 GATACTTTTGAATTGGT-CTT-AGCTACATCGT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          426607 31 -    438202 GATACTTTTGAATTGGT-CTT-AGCTACATCGT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66476107 31 +  90373283 GATACTTTTGAATTGGT-CTT-AGCTACATTGC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1526726 31 -   1547936 GATACTTTTGAATGGGT-CTT-AGCTACATCGT
i manLeu1.NW_012105442v1       C 0 C 0
s calJac3.chr1                 130411483 32 - 210400635 GATACTTTTGAATTGGT-CTTAAGCTACATTGT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64670624 32 -  72162052 GATGCTTTTGAATTGTT-CTTAAGCTACATTGT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1083222 32 +   1314817 GATGCTTTTGAATTGGT-CTTAAGCTACATTGT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6435831 32 -   6597006 GATGCTTTTGAATTGGT-CTTAAGCTACATTGT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19686530 29 -  27850971 TATA----Tggctcggtgctcacagcacagtgg
i otoGar3.GL873538             C 0 I 271
s dasNov3.JH570393               1788020 28 -   2296528 CATACTTTTGGGtt----attaaattatattg-
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79157042 318 -  85426708 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=19242.000000
s hg38.chr14_GL000009v2_random     49349 7 +    201709 TCATTGA
s panTro5.chr9                  41728912 7 + 116767853 TCATTGA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           14899 7 +     53730 TCATTAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40846421 7 + 122973662 TGGTTGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   540183 7 - 111343173 TCATTGT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111131847 7 - 111193037 TCTTTGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          387783 7 +    434444 TCATTGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          426638 7 -    438202 TCATTGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66476138 7 +  90373283 TCATTGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1526757 7 -   1547936 TCATTGA
i manLeu1.NW_012105442v1       C 0 C 0
s calJac3.chr1                 130411515 7 - 210400635 TCATTGT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64670656 3 -  72162052 TCA----
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1083254 3 +   1314817 TCG----
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6435863 3 -   6597006 TCA----
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19686830 7 -  27850971 TCATTGT
i otoGar3.GL873538             I 271 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79157042 318 -  85426708 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e dasNov3.JH570393               1788048 0 -   2296528 C
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1166970.000000
s hg38.chr14_GL000009v2_random     49356 152 +    201709 TCACTTTTTAAAACTATGAATGGATTCTATTACTTTTTATA-TGACCAGATTACATTAATACTAGCA-TAATTATGATTTCAA---ATTTTTACAAATCAGACTTAATTCTGAATTCAGTTATTAG---TTT---TGATATTGCTG--AAATATTTTAAACTTCA
s panTro5.chr9                  41728919 152 + 116767853 TCACTTTTTCAAATTATGAATGGATTCTATTACTTTTTATA-TGACCAGATTACATTAATACTAACA-TAATTATGATTTCAA---ATTTTTATAAATCAGACTTAATTCTGAATTCAGTTATTAG---TTT---TGATATTGCTG--AAATATTTTAAGCTTCA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           14906 152 +     53730 TCACTTTTTAAAATTATGAATGGATTCTATTACTTTTTATA-TGACCAGATTACATTAATACTAACA-TAATTATGATTTCAA---ATTTTTATAAATCAGAC--AATTCTGAATTCAGTTATTAG---TTT---TGATCTTGCTGATAAATATTTTAAGCTTCA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40846428 154 + 122973662 TCACTTTTTAAAATTATGAATGGATTCTATTACTTTTTATA-TGACCAGATTACATTAATACTAGCA-TAATTATGATTTCAA---ATTTTTATAAATCAGACTTAATTCTGAATTCAGTTATTAG---TTT---TGATATTGCTGATAAACATTTTAAGCTTCA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   540190 156 - 111343173 TCACTTTTTTAAATTATAAATGGATTCTATTA-TTTTTATA-TGACTAGATTACATTAATACTGACA-TAATTATTATTTCAA---ATTTATTTAAATTAGACTTAATTCTGAATTCAGTTATTAGTTTTGT---TGATATTGCTGATAAATATGTTAAGTTTCA
i rheMac8.chr15                C 0 I 1
s macFas5.chr13                111131854 157 - 111193037 TCACTTTTTAAAATTATGAATGCATTCTATTACTTCTTGTA-TGACCAGATTACATTAACAGTAACA-TAATTATGATTTCAA---ATTTGTATAAATCAGACTTAATTCTGAATTCAGTTATTAGTTTTTT---TGATATTGCTGATAAATATGTTAAGCTCCA
i macFas5.chr13                C 0 I 322
s macNem1.NW_012012823v1          387790 154 +    434444 TCACTTTTTAAAATTATGAATGCATTCTATTACTTCTTGTA-TGACCAGATTACATTAACAGTAACA-TAATTATGATTTCAA---ATTTTTATAAATCAGACTTAATTGTGAATTCAGTTATTAG---TTT---TGATATTGCTGATAAACATTTTAAGCTTCA
i macNem1.NW_012012823v1       C 0 I 1
s cerAty1.NW_012002921v1          426645 150 -    438202 TCACTTTTTAAAATTATGAATGGATTCTA----TTTTTATA-TGACCAGATTACATTAATACTAACA-TAATTATGATTTCAA---ATTTTTATAAATCAGACTTAATTGTGAATTCAGTTATTAG---TTT---GGATATTGCTGATAAACATTTTAAGCTTCA
i cerAty1.NW_012002921v1       C 0 I 1
s chlSab2.chr2                  66476145 150 +  90373283 TCACTTTTTAAAATTATGAATGGATTCTA----TTTTTATA-TGACCAGATTACATTAATACTAACA-TAATTATGATTTCAA---ATTTTTATAAATCAGACTTAATTATGAATTCAGTTATTAA---TTT---TAATATTGCTGATAAACATTTTAAGCTTCA
i chlSab2.chr2                 C 0 I 1
s manLeu1.NW_012105442v1         1526764 150 -   1547936 TCACTTTTTAAAATTATGAATGGATTCTA----TTTTTATA-TGACCAGATTACATTAATACTAACA-TAATTATGATTTCAA---ATTTTTATAAATCAGACTTAATTGTGAATTCAGTTATTAG---TTT---TGATATTGCTGATAAACATTTTAAGCTTCA
i manLeu1.NW_012105442v1       C 0 I 1
s calJac3.chr1                 130411522 157 - 210400635 TGTGTTTTTAAAATTATAAATGGATTCTATTACTCTTTATA-TGACCAAATTACATTAATACTAACA-TAATAATGATTTCAA---ATTTTTATGAATCAGACTTAATTCTGGATTCAATTATTAG---TTTCATTGATATTTCTGATAAACATTTTAAGCTGCA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64670659 151 -  72162052 ---Gtttttaaaattttaaat-gattctattattttttaaa-ttatCAGATTACATGAATACTAAC---AAGAATGATTTCAA---ATTTTTATAATTCAGATTCAATTCTTAATTCCATTATCAC---TTTAGATGAAATTGCTGGTAAATGTTTTAAACTTCA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1083257 154 +   1314817 ---GTTTTTAAAATTTTAAATGGATTCTATTATTTTTAAAA-TGATCAGATTACATGAATACTAACA-TAAGAATGATTTCAA---ATTTTTATAATTCAGATTTAATTCTTAATTCCATTATCAG---TTTAGATGAAATTGCTGGTAAATGTTTTAAACTTCA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6435866 154 -   6597006 ---GTTTTTAAAATTTTAAATGGATTCTATTATTTTTTAAA-TGATCAGATTACATGAATACTAACA-TAAGAATGATTTCAA---ATTTTTATAATTCAGATTTAATTCTTAATTCCATTATCAG---TTTAGATGAAATTGCTGATAAATGTTTTAAGCATCA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19686837 155 -  27850971 TCAGTTTGCAAAATTTTAAATTGATTCTGTTAGTCtttatatttatattatcatattataattaacattaagaatgatttaaa--tttttttataattCAGATTTAACTCTAAA-----TTATCAG---TTTACTTAATATTGATGATAAACATTTTAAACTTCA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79157360 141 -  85426708 GCACTTTTTAAAATTTTTAATTGATTCTCTTGTTCTTTGAA-TTATCAGATCACACTAGTACTAATA-TAAGAATGATTGAACTTTATTTTTATCATTCAGATTTAATTCAG-------------G---------TGACATTGATGATAAATATTTTACACTTAA
i canFam3.chr2                 I 318 C 0
s dasNov3.JH570393               1788048 134 -   2296528 -caattttaaaattttttaattgattttatttttCTTTG-A-CTATCAGGTTACATAAGTACTAATA-TCAGAATGATTT--G---ACGTTTATAATTCAGATTTAATTC-------------------ATT---TGACATTAATGATACATATTTTAAAATTCA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2590655.000000
s hg38.chr14_GL000009v2_random     49508 338 +    201709 TCCTCTTTT-T--TAACATATTCAAAAATACTCTTTGAATCGCTGACTCAAA-ATGAAAGGCAACAAAC--AT--A--ATAATT----AGGTTATAATTGTTTTAAAAGTGTA-TTCTT--TTCCTCTGTTTTAGGAACAAGCACAATATAAAAAACAATTAGAGCAGTTAAACAAGGATATCATACAGCTTCACT---AA---ATAAGAAGGAACTCACACTTAAAGATGTGGATTGTAAATTCTACAAAATGAAAACTGCTTATGAAGAGGT---TACAACTGAGTTAGAAGAATATAAGGAAGCCTTTGCAGCAGCATTGAAAGCTAACAGTTCCATGTCAAAAAAATTAACTAAGTAAGT
s panTro5.chr9                  41729071 333 + 116767853 GCCTCTTTT-T--TAACATATTCAAAAATGCTCTTTGAATCACTGACTCAAA-ATGAAAGGCAACAAAC--AT-----ATAATA----A--TTATAATTGTTTTAAAAGCGTA-TTCTT--TTCCTTTGTTTTAGTTACAAGCACAATATAAAAAACAATTAGAGCAGTTAAACAAGGATA--ATACGGCTTCACT---AA---ATAAGAAGGAACTCACatttaaagatgtgaaatgtaaattctacaaaatgtaaactgCTTATGAAGAGGT---TACAACTGAGTTAGAAGAATATAAGGAAGCCTTTGCAGCAGCATTGAAAGCTAACAATTCCATGTCAAAAAAATTAACTAAGTAAGT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           15058 337 +     53730 GCCTCTTTTAC--TAACATATTCACAATTGCTCTTTGAATCACTGACTCAAA-ATGAAAGGCAACAAAC--AT--A--ATAATT----AGGTTATAATTGTTTTAAAAGTGTA-TTATT--TTCCTTTGTTTTAGGAACAAGCACAATATGAAAAACAATTAGAGCAGTTAAACAAGGATA--ATATGGCTTCACT---AA---ATAAGAAGGAACTCACACTTAAAGATGTGGAATGTAAATTCTCAGAAATGAAAACTGCTTATGAAGAGGT---TACAACCGAATTAGAAGAATATAAGGAAGCCTTTGCAGCAGCATTGAAAGCTAACAATTCCATGTCAAAAAAATTAACAAAGTAAGT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40846582 335 + 122973662 GCCTCTTTTTT--AAACATATTCAAAATTGCTCTTTGAATCACTGACTCAAA-ATGAAAGGCAACAAAC--ATGTA--ATAATT----AGGTTATAATTGTTTTAAAAGTGTA-TTCTT--TTCATTTGTTTTAGAAACAAGCACAATATGAAAAACAATTAGAGCAGTTAAACAAGGATA--ATATGGCTTCACT---AA---ATAAGAAGGAACTCACACTTAAAGATGTGGAACGTAAATTCTCCAAAATGAAAACTGCTTATGAAGAGGT---TACAACCGAATTAGAAGAATATAAGGAAGCCTTTGCAGTAGCATTGAAGGCTAACAATTCCATGTCAAAAAAATTAATGAAGT----
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   540347 335 - 111343173 -CTTCTTTTTT--TAATGTATTAAAAATTGCTCTTTGAATCACTGACTCAAA-ATGAAAGACCACAAAC--AT--G--GTAATT----AGGTAATAATTGTTTTAAAAGTGTA-TTC-T--TTCATTTGTTTTAGGAACAAGCACAGTATGAAAAACAATTAGAGCAGTTAAACAAGGATA--ATACGGCTTCACT---AA---ATATGAAGGAACTCACACTTAAAGATGTGGAATGTAAATTCTCCAAAATGAAAACTGCTTATGAAGAGGT---TACAACCGAATTAGAAGAATATAAGGAAGCCTTTGCAGCAACATTGAAAGCTAACAATTCCATGTCAAAAAAAATAATGAAGTAAGT
i rheMac8.chr15                I 1 C 0
s macFas5.chr13                111132333 338 - 111193037 -TTTTTTTTTT--TAACATATTCAAAATTGCTCTTTGAATCACTGACTCAAA-ATGAAAGGCAAAAAAC--AT--ATGGTAATT----AGGTTATAATTGTTTTAAAAATGTA-TTCTT--TTCATTCATTTTAGACACAAGCACAACATGAAAAACAATTGGAGCAGTTAAGCAAGGATA--ACATGGCTTCACT---AA---ATAAGAAGGAACTCATGCTTAAAGATGTGGAATGTAAATTCTCCGAAATGAAAACTGCTTATGAAGAGGT---TACAACCGAATTGGAAGAATATAAGGAAGCCTTTGCAGCAGCATTGAAAGCTAACAATTCCATGTCAAAAAAAATAACAAAGTAAGT
i macFas5.chr13                I 322 C 0
s macNem1.NW_012012823v1          387945 335 +    434444 -CCTCTTTTTT--TAACATGTTCAAAATTGCTCTTTGAATCACTGACTCAAA-GTGAAAGGCAACAAAC--AT--A--ATAATT----AGGTTATAATTGTTTTAAAAGTGTA-TTCTT--TTCATTTGTTTTAGGGA-AAGCACAGTATGAAAAACAATTAGAGCAGTTAAATAAGGATA--ATATGACTTCACT---AA---ATGAGAAGAAACTCGAGCTTAAAGATGCGGAATGTAAATTCTCCGAAATGAAGACTGCTTATAAAGAGGT---TACAACTGAATTAGAAGAATATAAGGAAGCTTTTGCAATAGCATTGAAAGCTAACAATTCCGTGTCAAAAACATTAACGAAGTAAGT
i macNem1.NW_012012823v1       I 1 C 0
s cerAty1.NW_012002921v1          426796 335 -    438202 -CCTCTTTTTT--TAACATGTTCAAAATTGCTCTTTGAATCACTGACTCAAA-GTGAAAGGCAACAAAC--AT--A--ATAATT----AGGTTATAATTGTTTTAAAAGTGTA-TTCTT--TTCATTTGTTTTAGGAA-AAGCACAGTATGAAAAACAATTAGAGCAGTTAAATAAGGATA--ATATGACTTCGCT---AA---ATAAGAAGAAACTCGAACTTAAAGATGCGGAATGTAAATTCTCCGAAATGAAGACTGCTTATAAAGAGGT---TACAACTGAATTAGAAGAATATAAGGAAGCTTTTGCAATAGCATTGAAAGCTAACAATTCCGTGTCAAAAACATTAACGAAGTAAGT
i cerAty1.NW_012002921v1       I 1 C 0
s chlSab2.chr2                  66476296 338 +  90373283 -CCTCTTTTTT--TAACATGTTCAAAATTGCTCTTTGAATCACTGACTCAAA-GTGAAAGGCAACAAACATAT--A--ATAATT----AGGTTATAATTGTTTTACAAGTGTA-TTCTT--TTCATTTGTTTTAGGAACAAGCACTGTATGAAAAACAATTAGAACAGTTAAATAAGGATA--ATATGACTTCACT---AA---GTAAGAAGAAACTCAAACTTTAAGATGCGGAATGTAAATTCTCCAAAATGAAGACTGCTTATAAAGAGGT---TACAACTGAATTAGAAGAATATAAGGAAGCTTTTGCAATAGCATTGAAAGCTAACAATTCCATGTCAAAAAAACTAACGAAGTAAGT
i chlSab2.chr2                 I 1 C 0
s manLeu1.NW_012105442v1         1526915 335 -   1547936 -CCTCTTTTTT--TAACATGTTCAAAATTGCTCTTTGAATCACTGACTCAAA-GTGAAAGGCAACAAAC--AT--A--ATAATT----AGGTTATAATTGTTTTAAAAGTGTA-TTCTT--TTCATTTGTTTTAGGAA-AAGCACAGTATGAAAAACAATTAGAGCAGTTAAATAAGGATA--ATATGACTTCGCT---AA---ATAAGAAGAAACTCGAACTTAAAGATGCGGAATGTAAATTCTCCGAAATGAAAACTGCTTATGAAGAGGT---TACAACCGAATTGGAAGAATATAAGGAAGCCTTTGCAGCAGCATTGAAAGCTAACAATTCCGTGTCAAAAACATTAACGAAGTAAGT
i manLeu1.NW_012105442v1       I 1 C 0
s calJac3.chr1                 130411679 316 - 210400635 GCCTCTTTTTT--TAACGTCTTCAAAATTGCTCTTTGAATCACTGACTCAAA-ATGAAAAGCGACAAAT--AT--ATGGTAATT----AAGTTATAATTGTTTTAAAAGTATA--------TTCATTTGTTTTAGAAACAAGCAGACTATGAAAAACAATTAGAGCAGTTAAACAAGGA--------------------GG---ATGATATGGAGATCATGATTAAAGATGCGGAATTTAAACTCTCTGAAATAAAAACTGCTTATGAAGAGGC---TGCAACCGAATTAGAAAAATATAAGGAAGCCTTTGCAGCAGCATTAAAAGCTAACAATTCCATGTC---AAAATTCATGAAGTAAGT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64670810 344 -  72162052 GCTTCTTTTTTAAAAACATATTTAAAATTGCTTTCTGAATTACTTACTCTAA-ATGAAAGGCAACAAAT--AT--AGACTAATT----AGGTTATAATTGTTTTAAAAGTATGATTTTTTTTCCATTTGTTTTAGAAACAAGCAGAATATGAAAAACACTTAGAGCAGTTAGAAAAGAATT--ATATGGCTTCAAT---AA---ATAAAATAGACCTCATACAGAAAGATGCGAAATATCAGTTCTACAAAATGAAAACTGCTTTTGAAGAGGT---TACTACTGAATTAGAAGAATATAAGGAAGCCTTTGCAGTAGCATTAAAGGCTAACAGATCCATGTCAGAAAAAGTAAAGAAGTAAGT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1083411 342 +   1314817 GCTTCTTTTTTAAAAACATATTTAAAATTGTTTTCTGAATTACTTACTCTAA-ATGAAAGGCAACAAAT--AT--AGACGAATT----AGGTTATAATTGTTTTACAAGTATGATTTTT--TTCATTTGTTTTAGAAACAAGCAGAATATGAAAAACACTTAGAGCAGTTAAAAAAGAATT--ACATGGCTTCAGT---AA---ATAAAATAGACCTCATACAGAAAGATGCAAAATATCAGTTCTGCAAAATGAAAACTGCTTATGAAGAAGC---TACTACTGAATTAAAAGAATATAAGGAAGCCTTTGCAATAGCATTAAAGGCTAACAGATCCATGTCAAAAAAAGTAAAGAAGTAAGT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6436020 342 -   6597006 GCTTCTTTTTTAAAAACATATTTATAATTGCTTTCTGAATCACTTACTCTAC-ATAAAAGGCAACAAAT--AT--AGACTAATT----AGGTTATAATTGTTTTAAAAGTATGATTTTT--TTCATTTGTTTTAGAAACAAGCAGAATATGAAAAACACTTAGAGCAGTTACAAAAGAATA--ATATGGCTTTAGT---AA---ATAAAATAGACCTCATACAGAAAGATGCGAAATATCAGTTCTCCAAAATGAAAACTGCTTATGAAGAGGT---TACTACTGAATTAGAAGACTATAAGGAAGCCTTTGCAGTATCATTAAAGGCTAACAGATCCATGTCAAAAAAATTAAAGACGTAAGT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19686992 321 -  27850971 GCTTCTTCGCC-------TATTTAAAATTGCTTTCTGAATGACTGACTCAAA-----------AAAAAT--TC--A--GTA-----------TATGATTACTTTAAAAATATA-TCCTT--TTAATTTGTTTAAGACACAAGCAGCATCTCAAGAAAATTTAGAACAGTTAAGAGAGAGTC--ATATTTCTTCAATGAGAA---GTCAGATGGAACTCAGAATTAGAGACCTAGAATCTGAACTCTTCAAAATGAAAACTTCTCAAGAAGACTTTAATAAAGCTGAATTGGAAAAATATAAGCAACTCTATTTAGAAGAATTAAAAGTTAGAAAATCATTGGCTACTAAACTAAGCAAGTAAGT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79157501 338 -  85426708 -CTTTTTTTTT--T--TTTTTTTCAAATTCCTCTCTGAATCATTGACTCACA-GCTAAAGGAAAGAAAT--AT--ACTATAATTTTCCAGGTTATAGCTGTTTTAAAACTGTG---CTT--TTAATTTGCTTTAGACACAAGCAGCATCTCAAGAAAACTTAGAACAGTTAAGAGAAAGTA--ATAATGCTTCAAT---AAGAGGTCAACTGGAACTCAGAATTAAAGAGCTAGAATCTGAAATATCCAAAATCAAAAATTCTCAAGAAGA------TAAAGCAGAATTGGAAAAATACAGGCAACTCTACCTAGAAGAATCAAAAATTCGAATGTCATTGACAAATAAACTGAGCAAGTAAGT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1788182 346 -   2296528 ----GGTTTTT--TGCCACACTTAAAATCACTTTCCGAATAATTGACTAAAAAACTAAAAGAAAAAAAT--AT--GCTATGATTTTTCAGGCTATAAATATTTTTTAAATGTA-TCCTT--TTAATTTGCTTCAGACACAAGCAGCATCTCAAGAAAACTTAGAGCAGATAAGAGAGAATA--ACAATGCTTCAATAAGAA---GTCAGATGGAACTCAGAATAAAAGATCTAGAATCTCAACTCTGCAAAATGAAAACTTCCCAAGAAGATTCTAATAAAGCAGAATTGGAAAAATACAAGCAACTATATCTAGAAGAATTAAAAGTTAGAAAATCATTGTCAAATAAACTAAACAAGTAAGT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e panPan2.chr13                 96077325 1773 - 114479721 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1700057.000000
s hg38.chr14_GL000009v2_random     49846 190 +    201709 CAAAACAT-ACACTCATAGAAAATGAATTAAGCTCATTAATTTGTTTCAAAAGCATAATTTTTAGTGAGATGGCTTCAGGAGATTAGA--------AGGAAGTGAATGCTAATTTGACAATGTAATTTTGAAAAATAACGTGAGTAAATAATTTTACCTTTAAAATGTTAGTCAAAGATAGTTTT---------------------------TG------------TCTC--------TCCTCTC---------A
s panTro5.chr9                  41729404 182 + 116767853 CAAAACAT-ACACTC--AGAAAATGAATTAAGCTCATTAATTTGTTTCAAAAGCATACTTTTTAGTGAGATGGCTTCAGGATATTAGT--------AGGAAGTGAATGTTAATTTGACAATGTAATTTTGAAAAACAATGTTAGTAAATAATCTTACCTTT-TAATGTTAGTCAAAGATAGTTTT---------------------------TG------------TCTC--------TCA--------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079098 182 - 114479721 CAAAACAT-ACACTC--AGAAAATGAATTAAGCTCATTAATTTGTTTCAAAAGCATACTTTTTAGTGAGATGGCTTCAGGATATTAGT--------AGGAAGTGAATGTTAATTTGACAATGTAATTTTGAAAAACAATGTTAGTAAATAATCTTACCTTT-TAATGTTAGTCAAAGATAGTTTT---------------------------TG------------TCTC--------TCA--------------
i panPan2.chr13                I 1773 C 0
s gorGor5.CYUI01002030v1           15395 197 +     53730 CAAAACAT-ACACTCATAGAAAATGAATTAAGCTCATTAATTTGTTTTGAAAGCATAATTTTTAGTGAGATGGCTTCAGGAGATTAGT--------AGGAAGTGAATGCTAATCTAATAATGTAATTTCAGAAAATAATGTTAGTAAATAATCTTACCTTTAAAATGTTAGTCAAGGATAGTTTC---------------------------TGTCCATTTCTTTCTCTC--------TCT--------------
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40846917 199 + 122973662 CAAAACAT-ACACTCATAGAAAATGAATTAAACTCATTAATTTGTTTTGAAAGCATAATTTTTAGTGAGATGGCTTCAGGATATTAGT--------AGGAAGTGAATGCTAATTTGACAATGTAAGTTTGGAAAATAATGTTAGTAAATAATCTTACCTTTAAAATGTTAGTCAAGGATAGTTtc---------------------------tg------------tctc--------tcctctctctctctttt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   540682 198 - 111343173 CAAAACAT-ACACTCATAGAAAACGAATTAAACTCATTAATTTGTTTTGCAAGCATAATTTTTAGTGACATGACTTCAGGAGATCAGT--------AGGAAGTGAATGCTAATCTGATAATGTAATTTTGGAAAATAATGTTAGTAAGTAATCTTACCTTTAAAATGTTCATCAAGGATAGTTGC---------------------------TG------------TCTCTATTCTCTCTCTCttt---------
i rheMac8.chr15                C 0 I 6
s macFas5.chr13                111132671 192 - 111193037 CAAAACAT-ACAATTGTAGGAAATGAATTAAGCTCACTAATTTGTTTTGAAAACATAATTTTTAGTGAGATGGCTTCAGGAGATTAGT--------ACGAAGTGAATGCTAATTTGATAATGTAATTTTGGAAAATAATGTTAGTAAATAATCTTACCTTTAAAATATTAGTCAAGGATAATGTC---------------------------TG------------TCCC------ATTTCTATTT---------
i macFas5.chr13                C 0 I 6
s macNem1.NW_012012823v1          388280 190 +    434444 CAAAACAT-ACACTCATAGGGAATGAATTAAGCTCATTAATTTGTTTTGAAAGCATAATTTTTAGTGAGATGGCTTCAGGATATTAGT--------AGGAAGTGAACGCTAATTTGATCATGTAATTTTGGAAAATAATGTTAGTAAATAATCTTACCTTTAAAATGTTAGTCAAGGATAGTTTC---------------------------TG------------TCTC--------TCCTCTCA---------
i macNem1.NW_012012823v1       C 0 I 6
s cerAty1.NW_012002921v1          427131 190 -    438202 CAAAACAT-ACACTCATAGGGAATGAATAAAGCTCATTAATTTGTTTTGAAAACATAATTTTTAGTGAGATGGCTTCAGGATATTAGT--------AGGAAGTGAACGCTAATTTGATCATGTAATTTTGGAAAATAATGTTAGTAAATAATCTTACCTTTAAAATGTTAGTCAAGGATAGTTTC---------------------------TG------------TCTC--------TCCTCTCA---------
i cerAty1.NW_012002921v1       C 0 I 6
s chlSab2.chr2                  66476634 190 +  90373283 CAAAACAT-ACACTCATAGGGAATGAATTAAGCTCATTAATTTGTTTTGAAAGCATAATTTTTAGTGAGATGGCTTGAGGATATTAGT--------AGGAAGTGAACGCTAATTTGATCATGTAATTTTGGAAAATAATGTTAATAAATAATCTTACCTTTAAAATGTTAGTCAAGGATAGTTTC---------------------------TG------------TCTT--------TCCTTTCA---------
i chlSab2.chr2                 C 0 I 5
s manLeu1.NW_012105442v1         1527250 190 -   1547936 CAAAACAT-CCACTCATAGGGAATGAATAAAGCTCATTAATTTGTTTTGAAAGCATAATTTTTAGTGAGATGGCTTCAGGATATTAGT--------AGGAAGTGAACGCTAATTTGATCATGTAATTTTGGAAAATAATGTTAGTAAATAATCTTACCTTTAAAATGTTAGTCAAGGATAGTTTC---------------------------TG------------TCTC--------TCCTCTCA---------
i manLeu1.NW_012105442v1       C 0 I 7
s calJac3.chr1                 130411995 190 - 210400635 CAAAAGAT-ACACTCATAGAAGATGAATTAAGCTCATTAATTTGTTTTGAAAGCATAATTTTTAGTGAGATGGCTTCAGGAAATTAGT--------AGGAAGTGAATGCTAATTGGAAAATGTAATTTTGGAAAATAATGTTAGTAAATAATCTTACCTTTAAAATGTTAGTAAAAGATAATTTC---------------------------CT------------TCCT--------TTTTTTTT---------
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64671154 217 -  72162052 CAAAACAT-AGACTTGTAGAAAATCAGCTGGGCTCATTAACTTGCCATGAAAGCATAATTTTTAGTAATACAACTTTATGAGATCGGT--------AGGAAGTGAAAGCTATCCTGATGGTATAATTTTTGAAAAAAATATTAGTAAATAAACTTACATTTAAAATGTTAGCCAAGGACAGTTTCAGTTTCTGtcttttcttttcttttcttct------------tctt--------tttttttt---------
i saiBol1.JH378105             C 0 I 8
s cebCap1.NW_016107851v1         1083753 190 +   1314817 CAAAACAT-AGACTTGTAGAAAATGAACTGGGCTCATTAACTTGCCACCAAAGTATAATTTTTAGTGAGAGAACTTTATGAGATTGGT--------AGGAAGTGAAAGCTATCCTGATGGTATAATTTTTGAAAATAATATTAGTAAATAAACTTACATTTAAAATGTTAGCCAAGGACAGtttc---------------------------tg------------tctt--------ttctttct---------
i cebCap1.NW_016107851v1       C 0 I 3
s aotNan1.NW_018488791v1         6436362 190 -   6597006 CAAAACAT-AGACTTGTAGAAAATCAACTGGGCTCATTAACTTGCCATGAAAGCATACTTTATAGTGAGACAACTTTATGAGATTGGT--------AGGAAGTGAAAGCTACCCTGATGGTATAATTTTTGAAAATAATATTAGTAAATAAACTTACATTTAAAATGTTAGCCAAGGACGGTTTC---------------------------TG------------tctt--------tttttttt---------
i aotNan1.NW_018488791v1       C 0 I 4
s otoGar3.GL873538              19687313 186 -  27850971 CAAAACAT-AAAATC--AGAAAATAAATTAACCTCATTTATTTGTCTTGAAAGCCTAATTTTTAATGAAACAGGTTCGTGAGACTAGT--------AGGAAGTGAAACCTGACTAGATAATATACTTTTGGAAAATGATGCTAGTAAATGAACTTACCTTTAAAATGTTAATCCAGGACAGTTAC--------------------------TTG------------TCTC--------GCTCC------------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79157839 195 -  85426708 TAAAACA---GAATCATAGAAAATAGATTTAGCTTATTAATTTGTCTCTAAAGCATAATTTTTATGGAGATGGGTTTATGAGATGAGTAGGAAGTGAGGAAGTGAAAACCAACTGAATAGTATAATTTTGGAAAATAATGTTTGTAAATAAACTTACCTTT-ATATATTCATCCAGGACAGTTAG---------------------------CC------------TCTC--------TCCTCCAT---------
i canFam3.chr2                 C 0 I 3
s dasNov3.JH570393               1788528 184 -   2296528 CAAAACACAATAATCATAGAAAATAAATTTATCTCATTAATTTGCTTCTAAAGCAAAATTTTTAGTGAACTAGGTTCATGAGATTAGT--------ATAAAGTAAAAA-TAATTAAACACTATAATTTTGGGAAATGATGTGAGTAAATGAATTTACCTTT-AAATATTTGTCAA-----GTTTG---------------------------TG------------TCTC--------TTCCCCCT---------
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e colAng1.NW_012121088v1           43000 2175 +    168452 M
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=635774.000000
s hg38.chr14_GL000009v2_random     50036 65 +    201709 TTTTTTTT-----TTTGCTTTTGTATGGC-----------TTTTT-TTCCTGAAAAGTCTCATATAATTAACCTGATCTGTT
s panTro5.chr9                  41729586 64 + 116767853 -TTTTTTT-----TTTGTTTTTGTATGGC-----------TTTTT-CCCCTATAAAGTCTCATGTAATTAACCTGATCTGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079280 69 - 114479721 -TTTTTTTGTTTGTTTGTTTTTGTATGGC-----------TTTTT-CCCCTATAAAGTCTAATGTAATTAACCTGATCTGTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           15592 65 +     53730 -TTTTTTT-----TTTGCTTTTGTATGGC-----T-----TTTTT-CCCCTGAAAAGTCTCATGTAGTTAACCTGATCTGTT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847116 66 + 122973662 tttttttt-----tttgcttttgtatggc-----t-----ttttt-CCCCTGAAAAGTCTCATGTAGTTAACTTAATCTGCT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   540886 66 - 111343173 tttttttt-----tttgcttttgtatggc-----t-----ttttt-CCCCTGAAAAGTCTCATGTAGTTAACCTGATCTGTT
i rheMac8.chr15                I 6 C 0
s macFas5.chr13                111132869 66 - 111193037 TTTATTTT-----TTTGCTTTTGTATGAC-----T-----TTTTT-CCTCTGAAAACTCTCATGTAGTTAATCTGATCTGTT
i macFas5.chr13                I 6 C 0
s macNem1.NW_012012823v1          388476 66 +    434444 TTTGTTTT-----TTTGCTTTTGTATGGC-----T-----TTTTT-CCCCTGAAAAGTCTCATGTAGTTAACCTGATCTGTT
i macNem1.NW_012012823v1       I 6 C 0
s cerAty1.NW_012002921v1          427327 66 -    438202 TTTGTTTT-----TTTGCTTTTGTATGGC-----T-----TTTTT-CCCCTGAAAAATCTCATGTAGTTAACCTGATCTGTT
i cerAty1.NW_012002921v1       I 6 C 0
s chlSab2.chr2                  66476829 66 +  90373283 TTTGTTTT-----TTTGCTTTTGTATGGC-----T-----TTTTT-CCCCTGAAAAGTCTCATGTAGTTAACCTGATCTGTT
i chlSab2.chr2                 I 5 C 0
s manLeu1.NW_012105442v1         1527447 66 -   1547936 TTTGTTTT-----TTTGCTTTTGTATGGC-----T-----TTTTT-CCCCTGAAAAATCTCATGTAGTTAACCTGATCTGTT
i manLeu1.NW_012105442v1       I 7 C 0
s colAng1.NW_012121088v1           45176 66 +    168452 TTTTTTTT-----TTTGCTTTTGTATGAC-----T-----TTTTT-CCCCTGAAAAATCTCATGTAGTTAATCTGATCTGTT
i colAng1.NW_012121088v1       M 2175 C 0
s calJac3.chr1                 130412185 55 - 210400635 ----------------GCTTTTGTATGTC-----T-----TTTTT-TCACAGAAAGGTCTCATAGAGTTAACTTGATCTATG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64671379 66 -  72162052 ttttgctt-----ttgtcttttGTGTGGC-----T-----TTTTT-CCCCTAGAAAATCTCATGTAGTTAACGTAATCTATT
i saiBol1.JH378105             I 8 C 0
s cebCap1.NW_016107851v1         1083946 66 +   1314817 ttttactt-----ttgtcttttGTGTGGC-----T-----TTTTT-CCCCTGGAAAATCTCATGTAGTTAATGTAATCTATT
i cebCap1.NW_016107851v1       I 3 C 0
s aotNan1.NW_018488791v1         6436556 66 -   6597006 ttttgctt-----ttgtcttttttGTGGC-----T-----TTTTT-CCCCTGGAAAATCTCATGTAGTTACTGTAATCTATT
i aotNan1.NW_018488791v1       I 4 C 0
s otoGar3.GL873538              19687499 65 -  27850971 --TGTTTT-----TTTCATTTTCTATAGC-----T-----TTTTTATATCCTGATAATCTCTTGTAGTTAGCTTGATCTATT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79158037 67 -  85426708 TTTTTTTT-----TTTGGTTTTATATGACTTTATT-----TTTTC-CCCCTTAATATTCTC----AGTTAATCTGGTCTCAT
i canFam3.chr2                 I 3 C 0
s dasNov3.JH570393               1788712 65 -   2296528 ------TT-----TTTGGTTTTACATGAC-----TATATATTTTT-AACCTTAATATTCTCATTTAGTGAGCCTGACCTATT
i dasNov3.JH570393             C 0 I 1066
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=48195.000000
s hg38.chr14_GL000009v2_random     50101 14 +    201709 AGTTTTTTTCACTA
s panTro5.chr9                  41729650 14 + 116767853 AGTTTTTTTCACTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079349 14 - 114479721 AGTTTTTTTCACTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           15657 13 +     53730 AG-TTTTTTCACTA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847182 14 + 122973662 AGTTTTTTTCACTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   540952 12 - 111343173 GGGTTTTTTCAC--
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111132935 14 - 111193037 AGTTTTTGTCACTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          388542 14 +    434444 AGTTTTTTTCACTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427393 14 -    438202 AGTTTTTTTCACTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66476895 14 +  90373283 AATTTTTTTCACTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1527513 14 -   1547936 AGTTTTTTTCACTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45242 14 +    168452 AGTTTTTGTCACTA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412240  8 - 210400635 AGTCACTA------
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64671445  8 -  72162052 AGTCTTTT------
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1084012  8 +   1314817 AGTCTTTT------
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6436622  8 -   6597006 AGTCTTTT------
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19687564  8 -  27850971 AATCATTC------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79158104 14 -  85426708 CGTCTTTACAAACT
i canFam3.chr2                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e dasNov3.JH570393               1788777 1066 -   2296528 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1091577.000000
s hg38.chr14_GL000009v2_random     50115 127 +    201709 AGTATTTTTGAAGCTTTATAATTAATGAAGTGATCTTGTTATAAAATTACTTGTCAGAATTTCCCTAAATAGAAATATTAATGTGTTTAATT-------------------------------TACTTTTCAGTGGATCAC--AACCTAAATGCA----------AAGTG
s panTro5.chr9                  41729664 127 + 116767853 AGTATTTTTGAAGCTTCATAATTAATGAAGTGATCCTGTTATAAAATTACTTGTCAGAATTTCCCTAAATAGAAATATTAATGAGTTTAATT-------------------------------TCTTTTTCAGTGGATCAC--AACCTAAATGAA----------AAGTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079363 127 - 114479721 AGTATTTTTGAAGCTTTATAATTAATGAAGTGATCCTGTTATAAAATTACTTGTCAGAATTTCCCTAAATAGAAATATTAATGAGTTTAATT-------------------------------TGTTTTTCAGTGGATCAC--AACCTAAATGAA----------AAGTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           15670 125 +     53730 AGTATTTTCGAAGCTTTATAATTAATAATGTGATCTTGT--TAAAATTGCTTGTCAGAATTTCCCTAAATAG-AATATTAATGAGTTTA------------------------------------TTTTTTGGTAGATCAC--AACCTAAACCCAGA---CT-TCAAGTG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847196 134 + 122973662 AGTATTTTTGAAGCTATATAATTAATAAAGTGATCTTGTTATAAAATTACTTGTCAAAATTTCCCTAAATAGAAATATTAATGAGTTTAATT-------------------------------TATTTTTCAGTGGATCAC--AACCTAAACCCAAA---GTGTCAAGTG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   540964 132 - 111343173 --TGTTTTTGAAGCTTTATAATTAATTAAGTGATCTTGTTATAAAATTACTTGTCAGAATTTCCCTAAATAGAAATATTAATGAGTTTAATT-------------------------------TATTTTTTGGTAGATCAT--AACCTAAACCCAAA---GTGTCAAGTG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111132949 134 - 111193037 AGTATTTTTGAAGCTTTATAATTCATAAAGCGATCTTGTTATAAAATTACTTGTCAGAGTTTCCCTAAATAGAAAGATTAATGAGTTTAATT-------------------------------TATTCTTCGGTAGATCAC--AACCTACACCCAAA---GTGTCGAGTG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          388556 134 +    434444 AGTATTTTTGAAGTTTTATAATTAATAAAGTGATCTTGTTATAAGATTACTTGTCAGAATTTCCCTAAATAGAAATATTAATGATTTTAAAT-------------------------------AAATTTTTGGTAGATCAC--AACCTAAACCCAAA---GTGTCAAGTG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427407 134 -    438202 AGTATTTTTGAAGTTTTGTAATTAATAAAGTGATCTTGTTATAAGATTACTTGTCAGAATTTCCCTAAATAGAAATATTAATGATTTTAATT-------------------------------TAATTTTTGGTAGATCAC--AACCTAAACCCAAA---GTGTCAAGTG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66476909 134 +  90373283 AGTATTTTTGAAGTTTTATAATTAATAAAGTGATCTTGTTATAAGATTACTTGTCAGAATTTCCCTAAATAGAAATATTAATGATTTTAATG-------------------------------TAATTTTTGGTAGATCAC--AACCTAAAGCCAAA---GTGTCAAGTG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1527527 134 -   1547936 AGTATTTTTGAAGTTTTGTAATTAATAAAGTGATCTTGTTATAAGATTACTTGTCAGAATTTCCCTAAATAGAAATATTAATGATTTTAATT-------------------------------TAATTTTTGGTAGATCAC--AACCTAAACCCAAA---GTGTCAAGTG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45256 134 +    168452 AGTATTTTTGAAGCTTTATAATTCATAAAGCGATCTTGTTATAAAATTACTTGTCAGAGTTTCCCTAAATGGAAAGATTAATGAGTTTAACT-------------------------------TGGTTTTCAGTAGATCAC--AACCTACGCCCAAA---GTGTTGAGTG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412248 119 - 210400635 AGTATTTTTGAAGCTTTATAACTAATAAAGTGGTCTTGTCAAAAAACTACTTGTCAGAATTTCCTTAAATAGAAATATTGAGT--TTAA-------------------------------------TTTTTGGTAGATGAC--AACCTAAACCCAAAGTG----------
i calJac3.chr1                 C 0 I 6
s saiBol1.JH378105              64671453 118 -  72162052 AGCATTTTTGAAGCTTTATAGTCAGTGAAGTGCTTTTGTTATGAAATTACTTGTTAGAATTCTTCtaaatataaatattaattaattta-------------------------------------tttttGGTAGCTCAC--AACCTAAACCAGAA-------------
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1084020 118 +   1314817 AGCATTTTTGAAGCTTTATAGTCAATAAAGTGATTTTGTTATAAAATTACTTGTCAGAATTCTTCTAAATATAAATATTAATTAATTTA-------------------------------------TTTTTGGTAGATCAC--AACCTAAACCCAAA-------------
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6436630 118 -   6597006 AGCATTTTTTAAGCTTTATAGTCAATAAAGTGATTTTGTTATAAAATTACTTGTCAGAATTCTTCTAAATATAAATATTAATTTATTTA-------------------------------------TTTTTGGTAGATCGC--AACCTAAACCCAAA-------------
i aotNan1.NW_018488791v1       C 0 I 52
s otoGar3.GL873538              19687572 118 -  27850971 -----------ATCTGCATGGTTTAAACAGTGATATTATTGT-------------AGTATTCCCCTTAATGGAAATATTAATGAGTTTATATCTTGGAAGAGTCAGGTACTTTTAACTATTAATTACTCTTGGCACATTAT--G--------------------------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79158118 122 -  85426708 AAT-TGTTTAAAGCTTTATAATTTAGACAGC-ATACTATTATAAAA----TTGTCAGAATTACCCTAAATAGAAATATTAGTGAGTTTA-------------------------------------TTTTTGGAAGATTAC--ATCTTTAACCCAAA---AGATCAAGTG
i canFam3.chr2                 C 0 I 3
s dasNov3.JH570393               1789843 127 -   2296528 AGTATTTCTTAAGTTTTATTATGTAGACAGTGATATCATTATAAAATTGCTTGTCAGCACTCTCCTAAATAGAAATATTAACAAGTTTAACT--------------------------------ATTTTTTGAAAGATAACTTAACCCAAAGAAAGA---GT--------
i dasNov3.JH570393             I 1066 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=112602.000000
s hg38.chr14_GL000009v2_random     50242 24 +    201709 GTA----CTGCTACTCTGGGCAC-------------------AATTG----
s panTro5.chr9                  41729791 24 + 116767853 GTA----CTGCTACTTTGGGCAC-------------------AATCG----
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079490 24 - 114479721 GTA----CTGCTACTTTGGGCAC-------------------AATCG----
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           15795 24 +     53730 GTA----CTGCTACTCTGGGCAC-------------------AATCA----
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847330 24 + 122973662 GTA----CTGCTACTCTGGGCAC-------------------AATCG----
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541096 43 - 111343173 GTA----CTGCTACTCTGGGCACATCCTGGCGCTGAGGCAGGGACTG----
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133083 24 - 111193037 GTA----CTGCTACTCTGGGCAC-------------------AATCG----
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          388690 24 +    434444 GTA----CTGCTACTCTGGGCAC-------------------GATTG----
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427541 24 -    438202 GTA----CTGCTACTCTGGGCAC-------------------GATTG----
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477043 24 +  90373283 GTA----CTGCTGCTCTGGGCAC-------------------AATTG----
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1527661 24 -   1547936 GTA----CTGCTACTCTGGGCAC-------------------GATTG----
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45390 24 +    168452 GTA----CTGCTACTCTGGGCAC-------------------AATCG----
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412373 39 - 210400635 TTG----CTGCTTCTCTGGGCACATTCTGGCACTCAGG----CATGG----
i calJac3.chr1                 I 6 I 5
s saiBol1.JH378105              64671571 39 -  72162052 CTA----CTACAACTCTGGGCACATCCTGGCATTCAGT----AACTG----
i saiBol1.JH378105             C 0 I 4
s cebCap1.NW_016107851v1         1084138 43 +   1314817 CTACTACCTACAACTCTGGGCACATCCTGGCATTCAGT----AACTG----
i cebCap1.NW_016107851v1       C 0 I 4
s otoGar3.GL873538              19687690 14 -  27850971 ---GCACTTGGTAGTTT----------------------------------
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79158243 23 -  85426708 ATA----CTGCACATCCTGGCA--------------------GATTG----
i canFam3.chr2                 I 3 I 11
s dasNov3.JH570393               1789970 38 -   2296528 ----------CAATTCTTGGCACATTCTGGCACTTTGTA---AATTAGCTT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6436748 52 -   6597006 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=560850.000000
s hg38.chr14_GL000009v2_random     50266 52 +    201709 TTTTTGATTGTGATCTTTAGTA-TTATCACCAGA---------GGGTGCCTCAAGAAAGACT
s panTro5.chr9                  41729815 52 + 116767853 TTTTTGATTGTGATCTTTAGTA-TTATCATCAGA---------GGGTGCCTCAAGAAAGACT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079514 52 - 114479721 TTTTTGATTGTGATCTTTAGTA-TTATCATCAGA---------GGTTGCCTCAAGAAAGACT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           15819 52 +     53730 TTTTTGATTGTGATCTTTAGTA-TTATCACTAGA---------GGGTGCCTCAAGAAAGACT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847354 52 + 122973662 TTTTTGATTGTGATCTTTAGTA-TTATCACTAGA---------GGGTGCCTCAAGAAAGACT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541139 52 - 111343173 TTATTGATTGTGATCTTTAGTG-TTATCACTAGA---------GGGTGCCTCAAGAAAGACT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133107 52 - 111193037 TTTTTAATTGTGATTTTTAGTA-TTATCAATAGA---------GGGTGTCTCAAGAAAGACT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          388714 52 +    434444 TTTTTGATTGTGATCTTTAGTA-TTATCACTAGA---------GGGTGCCTCAAGAAAGACT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427565 52 -    438202 TTTTTGATTGTGATCTTTAGTA-TTATCACTAGA---------GGGTGCCTCAAGAAAGACT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477067 52 +  90373283 TTTTTGATTGTGATCTTTAGTA-TTATCACTAAA---------GGGTGCCTCAAGAAAGACT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1527685 52 -   1547936 TTTTTGATTGTGATCTTTAGTA-TTATCACTAGA---------GGGTGCCTCAAGAAAGACT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45414 52 +    168452 TTTTTAATTGTGATTTTTTGTA-TTTTCAATAGA---------GGGTGTCTCAAGAAAGACT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412417 52 - 210400635 TTTTTGATCGTGATCTCTAGTA-TTATCACTAGA---------GGGTGCCTCAAGACAGACT
i calJac3.chr1                 I 5 C 0
s saiBol1.JH378105              64671614 52 -  72162052 TTCCTGTTTGTGATCTTTAGTA-TTATCACTAGA---------GGGCGCTTTGAGACAAACT
i saiBol1.JH378105             I 4 C 0
s cebCap1.NW_016107851v1         1084185 52 +   1314817 TTCCTGATTGTGATCTTTAGTA-TTATCACTAGA---------GGGCGCTTTGAGACAAACT
i cebCap1.NW_016107851v1       I 4 I 29
s aotNan1.NW_018488791v1         6436800 52 -   6597006 TTCCTGATTGTGATCTTTACTA-TTATCACTAGA---------GGGCGCTTTGAGACAAACT
i aotNan1.NW_018488791v1       I 52 C 0
s otoGar3.GL873538              19687704 49 -  27850971 TCTTTAATGGTAATCTTTGTTATTTGCCACTAGA---------GGGCGCCTTGAGACT----
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79158277 60 -  85426708 TTCTTGATTGT-ATCTTTGGTA-TTATTACTAGAGAGCCTTGGGGGTGGGGGGAGGGAAACT
i canFam3.chr2                 I 11 C 0
s dasNov3.JH570393               1790008 39 -   2296528 TTCTCTATTGTGACCTTTGGTT-TGGTCACTAGA----------------------CAAACC
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=37874.000000
s hg38.chr14_GL000009v2_random     50318 3 +    201709 ATT
s panTro5.chr9                  41729867 3 + 116767853 ATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079566 3 - 114479721 ATT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           15871 3 +     53730 ATT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847406 3 + 122973662 ATT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541191 3 - 111343173 ATT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133159 3 - 111193037 ATT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          388766 3 +    434444 ATT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427617 3 -    438202 ATT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477119 3 +  90373283 ATT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1527737 3 -   1547936 ATT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45466 3 +    168452 ATT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412469 3 - 210400635 ATT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64671666 3 -  72162052 ATT
i saiBol1.JH378105             C 0 I 1
s aotNan1.NW_018488791v1         6436852 3 -   6597006 ATT
i aotNan1.NW_018488791v1       C 0 I 19
s otoGar3.GL873538              19687753 3 -  27850971 ATT
i otoGar3.GL873538             C 0 I 1
s canFam3.chr2                  79158337 3 -  85426708 ATC
i canFam3.chr2                 C 0 I 1
s dasNov3.JH570393               1790047 3 -   2296528 ATC
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e cebCap1.NW_016107851v1         1084237 29 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=107204.000000
s hg38.chr14_GL000009v2_random     50321 21 +    201709 -TGTGTAACATATTCAAGATGT
s panTro5.chr9                  41729870 21 + 116767853 -TGTGTAACATATTCAAGATGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079569 21 - 114479721 -TGTGTAACATATTCAAGATGT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           15874 20 +     53730 -TGTGTAACAT-TTCAAGATGT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847409 21 + 122973662 -TGTGTAACATTTTCAAGATGT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541194 21 - 111343173 -TGTGTAACATTTTCAAGGAGT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133162 21 - 111193037 -TGTGTAACATTTTCAAGATGT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          388769 21 +    434444 -TGTGTAACATTTTCAAGATGT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427620 21 -    438202 -TGTGTAACATATTCAAGATGT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477122 21 +  90373283 -TGTGTAACATTTTCAAGCTGT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1527740 21 -   1547936 -TGTGTAACATATTCAAGATGT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45469 21 +    168452 -TGTGTAACAATTTCAAGGTGT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412472 21 - 210400635 -TGTGTAACATTTTCAAGATGT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64671670 18 -  72162052 -TGTATAGTTTTTTCCGCG---
i saiBol1.JH378105             I 1 C 0
s otoGar3.GL873538              19687757 18 -  27850971 -TTTATGGTTTTCCCACTC---
i otoGar3.GL873538             I 1 C 0
s canFam3.chr2                  79158341 18 -  85426708 -TTTGTAGCTTTTCTAATT---
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1790050 19 -   2296528 CTTTACTGCTTTTACACTC---
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6436855 19 -   6597006 I
e cebCap1.NW_016107851v1         1084237 29 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=13923.000000
s hg38.chr14_GL000009v2_random     50342 1 +    201709 T
s panTro5.chr9                  41729891 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079590 1 - 114479721 T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           15894 1 +     53730 T
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847430 1 + 122973662 T
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541215 1 - 111343173 T
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133183 1 - 111193037 T
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          388790 1 +    434444 T
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427641 1 -    438202 T
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477143 1 +  90373283 T
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1527761 1 -   1547936 T
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45490 1 +    168452 T
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412493 1 - 210400635 T
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64671688 1 -  72162052 T
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6436874 1 -   6597006 T
i aotNan1.NW_018488791v1       I 19 C 0
s otoGar3.GL873538              19687775 1 -  27850971 T
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79158359 1 -  85426708 T
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1790069 1 -   2296528 T
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e cebCap1.NW_016107851v1         1084237 29 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=704896.000000
s hg38.chr14_GL000009v2_random     50343 67 +    201709 ACAGAAAGGCACCCTTGTGAAATAGGGAATAATTATCACAGGAATTTAAAGAAGTGTAATTCACAAA
s panTro5.chr9                  41729892 67 + 116767853 ACAGAAAGGCATCCTTGTGAAATAGGGAATAATTATCACAGGAATTTAAGGAAGTGTAATTCACAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079591 67 - 114479721 ACAGAAAGGCATCCTTGTGAAATAGGGAATAATTATCACAGGAATTTAAGGAAGTGTAATTCACAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           15895 66 +     53730 ACAGAAAGGCATCCTTGTGAAATAGGGAATAATTATCA-AGGAATTTAAAGAAGTGTAATTCACaaa
i gorGor5.CYUI01002030v1       C 0 I 304
s nomLeu3.chr1a                 40847431 67 + 122973662 ACAGAAAGGCATCCTTGAGAAATAGGGAATAATTATCACAGGAATTTCAAGAAGCGTAATTCACAAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541216 67 - 111343173 ACAGAAAGGCATCCTTGTGAAATATGGAATAATTATCACAGGAATGAAAAGAAGTATAATCCACAAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133184 66 - 111193037 ACAGAAAGGCATCCTTGTGAAATAGGGAATAATTATCA-AGGAATTTAAAGAAGTGTAATTCACAAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          388791 67 +    434444 ACAGAAAGGCATCCTTGTGCAATGGTGAATAATTATCACAGGAATTTAAAGAAGTGTAATTCACAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427642 67 -    438202 ACAGAAAGGCATCCTTGTGAAATAGTGAATAATTATCACAGGAATTTAAAGAAGTGTAATTCACAAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477144 67 +  90373283 ACAGAAAGGCATCCTTGTGAAATAGTGAATAATTATCACAGGAATTTAAAGAAGTGTAATTCACAAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1527762 67 -   1547936 ACAGAAAGGCATCTTTGTGAAATAGTGAATAATTATCACAGGAATTTGAAGAAGTGTAATTCACAAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45491 66 +    168452 ACAGAAAGGCATCCTTGTGAAATAGGGAATGATTATCA-AGGAATTTAAAGAAGTGTAATTCACAAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412494 67 - 210400635 ACAGAAAAGCATCCTTGTGAAATAGGGAATAGTTGTCACAGAAATGAAAAGAAGTGTAATTCACAAA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64671689 63 -  72162052 ACAGGAAGGCATCCTTGTGAAATAGGGAATGATTATCCTAAGGATGAAAA----TGTAATTTACAAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1084266 63 +   1314817 ACAGGAAGGCATCCTTGTGAAACAGGGAATGATTATCCTAAGGATGAAAA----TGTAATTTACAAA
i cebCap1.NW_016107851v1       I 29 C 0
s aotNan1.NW_018488791v1         6436875 63 -   6597006 ACCGGAAGGCATCCTTGTGAAATAGGGAATGATTATCCTAAGGATGAAAG----TGTAATTTACAAA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19687776 64 -  27850971 ACTAAAAGGCATGCTTGT---ATAGGGAGTGATTAGCACAGGGATGAAGGGAAGTGCAATTCATAAA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79158360 67 -  85426708 ATATAAAGGTGTACATGTGAAATACAGAAAGATTCACATACGGGTGAAAGGCAGTATAAATCCCAAA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1790070 59 -   2296528 CCAAAAAGGCATACCTGTGAAGTATGAA--------CATAGGGGTGAAGGAAAGTGTAATTCACAGA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=52924.000000
s hg38.chr14_GL000009v2_random     50410 6 +    201709 GCGGTT
s panTro5.chr9                  41729959 6 + 116767853 GCGGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079658 6 - 114479721 GCGGTT
i panPan2.chr13                C 0 C 0
s nomLeu3.chr1a                 40847498 6 + 122973662 GTGGTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541283 6 - 111343173 GTGGTT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133250 6 - 111193037 GTCGTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          388858 6 +    434444 GTGGTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427709 6 -    438202 GTGGTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477211 6 +  90373283 GTAGTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1527829 6 -   1547936 GTGGTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45557 6 +    168452 GTGGTT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412561 6 - 210400635 TTGGTT
i calJac3.chr1                 C 0 I 1
s saiBol1.JH378105              64671752 6 -  72162052 GTCGTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1084329 6 +   1314817 GTCGTT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6436938 6 -   6597006 GTCGTT
i aotNan1.NW_018488791v1       C 0 I 1
s otoGar3.GL873538              19687840 6 -  27850971 GCTATT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79158427 6 -  85426708 GTGGTG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1790129 6 -   2296528 GTGGCT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I
e gorGor5.CYUI01002030v1           15961 304 +     53730 I

a score=11849.000000
s hg38.chr14_GL000009v2_random     50416 1 +    201709 A
s panTro5.chr9                  41729965 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079664 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           16265 1 +     53730 a
i gorGor5.CYUI01002030v1       I 304 C 0
s nomLeu3.chr1a                 40847504 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541289 1 - 111343173 A
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133256 1 - 111193037 A
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          388864 1 +    434444 A
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427715 1 -    438202 A
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477217 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1527835 1 -   1547936 A
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45563 1 +    168452 A
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412568 1 - 210400635 A
i calJac3.chr1                 I 1 C 0
s saiBol1.JH378105              64671758 1 -  72162052 A
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1084335 1 +   1314817 A
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6436945 1 -   6597006 A
i aotNan1.NW_018488791v1       I 1 C 0
s canFam3.chr2                  79158433 1 -  85426708 A
i canFam3.chr2                 C 0 I 201
s dasNov3.JH570393               1790135 1 -   2296528 G
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e otoGar3.GL873538              19687846 0 -  27850971 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2269141.000000
s hg38.chr14_GL000009v2_random     50417 229 +    201709 AAA-AATAACACCTTGTTCAGCCTGAA---GCGGTGTGTGGAAGGCAGAAAGAACATGCC-CCAC-CTCCAGGGCCTTGGTCACAGTGTTGGGGACTAATTGCCTTCAGAGATGC--TTTAGTTCTTTTTGATCACCAACCAGACAATCTAGTTCTCCCCTAGGAGTTGTTGCTCTGAATTATTCCTCAGTGCCAAATGTTTAATTGGTCCTAGATAATGGGTG---TGTACAAGAGTG----------------------------------------------A
s panTro5.chr9                  41729966 232 + 116767853 AAA-AATAACACCTTGTTCAGCCTGAA---GGGGTGTGTGGAAGGCAGAAAGAACATGCC-CCAC-CTCCTGGGCCTTGGTCACAGTGTTGGGGGCTAATTGCCTTCAGAGATGC--TTTAGTTCTTTTTGATCACCAACCAGACAATCTAGTTCTCCCCTAGGAGTTGTTGCTCTGAATTATTCCTCAGTGCCAAATGTTTAATTGGTCCTAGATAATGGGTGAAATGTACAAGGGTG----------------------------------------------A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079665 232 - 114479721 AAA-AATAACACCTTGTTCAGCCTGAA---GGGGTGTGTGGAAGGCAGAAAGAACATGCC-CCAC-CTCCTGGGCCTTGGTCACAGTGTTGGGGGCTAATTGCCTTCAGAGATGC--TTTAGTTCTTTTTGATCACCAACCAGACAATCTAGTTCTCCCCTAGGAGTTGTTGCTCTGAATTATTCCTCAGTGCCAAATGTTTAATTGGTCCTAGATAATGGGTGAAATGTACAAGGGTG----------------------------------------------A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           16266 228 +     53730 aaa-aaaaaaaCCTTGTTCAG-CTGAA---GGGGTGTGTGGAAGGCAG-AAGAAAAAGCC-CCAC-CTCCAGTGCCTTGGTCACAGTGCTGGGG-CTAATTGCCTTCAGACATGC--TTTAGTTCTTTTTGATCACCAACCAGCCAATCTAGTTCTCCCCCAGGAGTTGTTGTTCTGAATTATTCCTCAGTACCAAATGCTTAATTGTTCCTAGATAAT-GGTGAAATGCACAAGGGTG----------------------------------------------A
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847505 232 + 122973662 AAA-AATAACACCTTGTTCAGCCTGAA---GGGGTGTGTGGAAGGCAGAAAGAACAAGCC-CCAC-CTCCAGTGCCTTGGTCACAGTGCTGGGGGCTAATTGCCTTCAGAGATGC--TTTAGTTCTTTTTGGTCACCAACCAGACAATCTAGTTCTCCCCTAGGAATTGTTGCTCTGAATTATTCCTCAGTGCCAAATGTTTAATCGTTCCTAGATAATGGGTGAAATGTACAAGGGTG----------------------------------------------A
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541290 233 - 111343173 AAAGAAAAACACCATGTTCAGCCTGAA---GGGGTATGTGGAAGGCAGAAAGAACAAGCC-CCAC-CTGCAGTGCCTTGGTCACAGTGCTGGGGGCTAATTGCCTTCAGAGATGC--TTTAGTTCTCTTTGATCACCAACCAACCAATCTGGTTCTCCCCCAGGAGTTGTTGCTCTGAGTTACTCCTCAGTGCCAAATACTCAATTGTTCTTAGATCTCGGGTGAAATGTACAAGGGTG----------------------------------------------A
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133257 231 - 111193037 AAA-AGTAACACCTTGTTCAGCCTGAA---GATTTGTGTGGAAGGCAGAAAGAACAAGCC-CCCCACTCCAGTGCCTTGGTCACAGTGCTGGGGGCTAATTGCCTTCAGCGCTGC--TTTAGTTCTTTTT-ATTCCAAGCCACACCATCTAGTTCT-CCCCAGGAGCTGTTGCTCTGAGTTCTTCCTCAGTGCCAAATGCTTAATTGTTCCCAGATAATGGGTGAAATGTACAAGGGTG----------------------------------------------A
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          388865 227 +    434444 AAA-AATAACACCTTGTTCAGCCTGAA---GGAGTGTGTGGAAGGCAGAGAGAACAAGCC-GCAC-CTCCAGTGCCTTGGTCACAGTGCTGGGGGCTAATTGCCTTCAGAGATGC--TTCAGTTCTTTTTGATCACCAGCCA----ATCTAGTTCT-CCCCAGGAGCTGTTTCTCTGAATTATTCCTCAGTGCCGAATGTTTAATTGTTCCTAGATAATGGGTGAAATGTACAAGGGTG----------------------------------------------A
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427716 226 -    438202 AAA-AATAACACCTTGTTCAGCCTGAA---GGAGCGTGTGGAAGGCAG--AGAACAAGCC-CCAC-CTCCAGTGCCTTGGTCACAGTGCTGGGGGCTAATTGCCTTCAGAGATGC--TTCAGTTCTTTTTGATCACCAGCCA----ATCTAGTTCTCCCCTAGGAGTTGTTTCTCTGAATTATTCCTCAGTGCCGAATGTTTAATTGTTCCTAGATAATGGGTGAAATGTACAAGGGTG----------------------------------------------A
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477218 228 +  90373283 AAA-AATAACACCTTGTTCAGCCTGAA---GGAGTGTGTGGAAGGCAGAGAGAACAAGCC-CCAC-CTCCAGTGCCTTGGTCACAGTGCTGGGGGCTAATTGCCTTCAGAGATGC--TTCAGTTCTTTTTGATCACCAGCCA----ATCTAGTTCTCCCCTAGGAGTTGTTTCTCTAAATTATTCCTCAGTGCCGAAGGTTTAATTGTTCCTAGATAATGGGTGAAATGTACAAGGGTG----------------------------------------------A
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1527836 226 -   1547936 AAA-AATAACACCTTGTTCAGCCTGAA---GGAGCGTGTGGAAGGC--AGAGAACAAGCC-CCAC-CTCCAGTGCCTTGGTCACAGTGCTGGGGGCTAATTGCCTTCAGAGATGC--TTCAGTTCTTTTTGATCACCAGCCA----ATCTAGTTCTCCCCTAGGAGTTGTTTCTCTGAATTATTCCTCAGTGCCGAATGTTTAATTGTTCCTAGATAATGGGTGAAATGTACAAGGGTG----------------------------------------------A
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45564 232 +    168452 AAA-AATAGCACCTTGTTCAGCCTGAA---GATTTGTGTGGAAGGCAGAAAGAACAAGCC-TCCCTCTCCAGTGCCTTGGTCACACTGCTGAGGGCTAATTGCCTTCAGAGCTGC--TTTAGTTCTTTTT-ATCCCCAACCACACCATCTAGTTCTCCCCCAGGAGCTGTTCCTCTGAGTTCTTCCTCAGTGCCAAATGCTTAATTGTTCCTAGATAATGGGCGAAATGTGCAAGGGTG----------------------------------------------A
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412569 233 - 210400635 AAA-AATAACACCTTGTTTAGCCAGAA---GGGGTGTGGGGAAGGCAGAAAGAACAAACCGGCAT-GTCCAGGACCTTGGTCACAGTGTTAGGGGCTAATTGACTTCAGAGATGC--TTTAGTTGTTTTTTATCAGCAACCCAGCCATCTAGTTCTCTCCTAGGAGTTGTTGCTCTGAATTATTCCTCAGTGCCAAATGTCTCATTGTTCCCAGATATTTGGTGAAATGTACAAGAGTG----------------------------------------------A
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64671759 275 -  72162052 AAA-AATAACATCTTGGTCAGCCTGAAAGTGGGGTGTGTGGAAGACAGAAAGGGCAGGCC-CCAC-CTCCAGTGCCTTGGTCACAATGCTAGTGGCTAATGGCCTTCAAAGATGC--TTTA---GTTCTTGATCACCAACCTAGCCATCTAGTTCTCCTCTAGGAGTTCTTGCTGTGACTTATTCCTCAGTGCCAAATGCTTAATTTTTCCTAAATAATGGATGAAATGTACAAGGGTGGTGAAAGCAAATGTTTGAAAATACATATGGAGG---TAGTTTTTAAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1084336 275 +   1314817 AAA-AATAACACCTTGGTCAGCCTGAAGG-GGGGTGTGTGGAAGAC--AAAGGGCAGGCC-CCAC-CTCCAGTGCCTTGGTCACAATGCTAGTGGCTAATGGCTTTCAGAGATGC--TTTAGTTCTTTTTGATCACCAACCCAGCCATCTAGTTCTCCCCTAGGAGTTCTTGCTGTGACTTATTCCTCAGTGCCAAATGCTTAATTTTTCCTAAATAATGGATGAAGTTTACAAGGGTGGTGAAAGCAAATGTTTGAAAATACATTTGGAAG---TAGTTTTTAAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6436946 276 -   6597006 AAA-AATAACACCTTGGTCAGCCTGAAGG-GGGATCTGTGGAAGAGAGAAAGGGCTGACC-CCAT-CTCCAGTGCCTTGGTCACAATGCTAGTGACTAATGGCCTTCAGAGATGC--TTTAGTTCTTTTTGATTACCAACCCAGCCATCCAGTTCTCCCC-AGGAGTTCTTGCTGTGACTTATTCCTCAGTGCCAAATGCTTAATTTTTCTTAAATAATGGATGAAAGGTACAAGGGTGGTGAAAGTAAATGTTTGAAAATACATTTGGAAG---TAGTTTTTAAA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19687846 275 -  27850971 AAA-TATAATACCTTGGACAGCCTGAG---GGAATGTCAGGAAAACAGAAATGACAGATC-CCAC-CTGTGATG-CTTGAAAGCAATGCCAGGTGCTA---GCCTTTGGAGCTGCTTTTTAGTTCTTTCTGATCACCATTTCAACTGTCTCGTTCTCCCCTACAGCTTGCTGCTCTGAATTCATCCTCAGTGCCAAATGCCTAATTTCTCCCAGATGATGGGTGAAATGTGTAAGGGCGATGAAAGCAAATGCTTGAAAATGTCTTGGAGGGATTTTGTTTTTT-A
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79158635 229 -  85426708 AAA-AATAGCATCATGGTGGGCATGAG---GGGGCGTGTGGAAGACAAAAAGGGCAGATT-CTAC-CTCCAGGGTCTTGGTAAC--TGTTATCAGCTAATTGCCTCTGGAGCTGT--TTCAGTCCTTTCTGATCA-CAGCTCTGTGATCAACCTGGCCCCTAGAGATTATTGGTCTGAGGTATTCCTCGGTGCCAAATACTCAATTTCTCTGAGGTAATGAGTGAAATGTACAAGAGTG----------------------------------------------G
i canFam3.chr2                 I 201 I 65
s dasNov3.JH570393               1790136 187 -   2296528 -GA-AGTGATACCTTGGTCAGCCTCAG---AGCCTGTGTGAAAGGCAGAAGG--CAGGTA-CTGC-CTCCAAGGCCTTGATAACAAG-----------------TATGGAACTGT--TTTCGTTCTTTTGGATCAACAAC-------TCCGGTT-----------GCTATAGCTCTGAATTTTTCCC--GTGCCTTGTGCTTAATTTCTCTGAGGTAG-----GTAATGTACAAGGGTG----------------------------------------------A
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=312593.000000
s hg38.chr14_GL000009v2_random     50646 56 +    201709 AATCTAAA-ACTGGTTTACTAAACACAAGTGTTCCTAGA--TTTTT---------TTTCT-TTCATTTT
s panTro5.chr9                  41730198 55 + 116767853 AATCTAAA-ACTGGTTTACTAAACACAAGTATTCCTAGA--TTTTT---------TTTA--TTCATTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079897 54 - 114479721 AATCTAAA-ACTGGTTTACTAAACACAAGTATTCCTAGA--TTTTT---------TTA---TTCATTTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           16494 56 +     53730 AACCTAAA-ATT-GTTTGCTAAACACAAGTATTCCTAGA--TTTTT---------TTGTTGTTCATTTT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847737 55 + 122973662 AACCTAAA-ACTAGTTTACTAAACACAAGTATTCCTAGA--TTTTT---------TTCA--TTCATTTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541523 55 - 111343173 AACCTGAA-ACTGGTTTACTAAACACAAGTATTTCTAGA--TTATT---------TTTG--TTCATTTT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133488 56 - 111193037 AACCTAAA-ATTTCTTTACTAAACAGAACTATTCCTAGATTTTTTT---------TTTG--TTCATTT-
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          389092 55 +    434444 AGCCTAAA-ACTGGTTTACTCAACACAAGTATTCCTAGA--TTTTT---------TTTG--TTCATTTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427942 52 -    438202 A---TGTA-CAAGGTTTACTCAACACAAGTATTCCTAGA--TTTTT---------TTTG--TTCATTTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477446 55 +  90373283 AGCCTAAA-ACTGGTTTACTCAACACAAGTATTCCTAGA--TATTT---------TTTG--TTCATTTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1528062 52 -   1547936 A-TGTACA-A--GGTTTACTCAACACAAGTATTCCTAGA--TTTTT---------TTTG--TTCATTTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45796 57 +    168452 AACCTAAA-ATTTCTTTACTAAACACAACTATTCCTAGATTTTTTT---------TTTG--TTCATTTT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412802 55 - 210400635 AACCTGAA-ATTGGTTTACTAAACACAAGTGTTTCTAGG--TTTTT---------TGTT--TGTTCGTT
i calJac3.chr1                 C 0 I 2
s saiBol1.JH378105              64672034 55 -  72162052 ATCCTGAA-ACCGGTTTTCTAAATGCAAATATTTCTAGC--TTTCT---------TTTC--TTTTCTTT
i saiBol1.JH378105             C 0 I 2
s cebCap1.NW_016107851v1         1084611 55 +   1314817 ATCCTGAA-ACTGGTTTCCTAAATGCAAATAtttctagc--tttct---------tttc--ttttcttt
i cebCap1.NW_016107851v1       C 0 I 19
s aotNan1.NW_018488791v1         6437222 55 -   6597006 ATCCTGAA-ACTGGTTTCCTAAATATAAATATTTCTAGC--tttct---------tttc--ttttgttt
i aotNan1.NW_018488791v1       C 0 I 1
s otoGar3.GL873538              19688121 65 -  27850971 AGTCTGTGCATGGGTTCCCTAAATAAAAGTATTTTTAGT--TTTTTAAAATTTTAGCTG--TTTATTAT
i otoGar3.GL873538             C 0 I 59
s dasNov3.JH570393               1790323 24 -   2296528 -------------------TATGAGCAAATGCTTGAAAA--TATG------------------------
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79158864 65 -  85426708 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=104279.000000
s hg38.chr14_GL000009v2_random     50702 17 +    201709 AGTTTTCTTAACCTACA
s panTro5.chr9                  41730253 17 + 116767853 AGTTTTCTTAACCTACA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079951 17 - 114479721 AGTTTTCTTAACCTACA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           16550 17 +     53730 AGTTTTCTTAACCTACA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847792 17 + 122973662 AGTTTTCTTAACCTACA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541578 17 - 111343173 AGTTTTCTTAATCTACA
i rheMac8.chr15                C 0 I 4
s macNem1.NW_012012823v1          389147 17 +    434444 AGTTTTCTTAACCTACA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          427994 17 -    438202 AGTTTTCTTAACCTACA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477501 17 +  90373283 AGTTTTCTTAACCTACA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1528114 17 -   1547936 AGTTTTCTTAACCTACC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45853 17 +    168452 AGTTTTCTTAACCTACA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412859 17 - 210400635 AGTTTTCTTAATCTACA
i calJac3.chr1                 I 2 I 4
s saiBol1.JH378105              64672091 17 -  72162052 TCTTTTTTTTttgtata
i saiBol1.JH378105             I 2 I 4
s aotNan1.NW_018488791v1         6437278 16 -   6597006 -tttttttttAAgtata
i aotNan1.NW_018488791v1       I 1 I 4
s otoGar3.GL873538              19688245 17 -  27850971 aattttcatagactgga
i otoGar3.GL873538             I 59 I 17
s dasNov3.JH570393               1790347  5 -   2296528 --------TAGCC----
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79158864 65 -  85426708 I
e cebCap1.NW_016107851v1         1084666 19 +   1314817 I
e macFas5.chr13                111133544  0 - 111193037 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=234414.000000
s hg38.chr14_GL000009v2_random     50719 26 +    201709 ttaaggagtacaacatga-------tgttttga
s panTro5.chr9                  41730270 26 + 116767853 ttaaggagtacaacatga-------tgttttga
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079968 26 - 114479721 ttaaggagtacaacatga-------tgttttga
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           16567 26 +     53730 ttaaggagtacaacatga-------tgttttga
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847809 26 + 122973662 ttaaggagtacaacatga-------tgttttga
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541599 25 - 111343173 ttaaggagtacaacatga-------tg-tttgg
i rheMac8.chr15                I 4 C 0
s macFas5.chr13                111133544 18 - 111193037 --------tacaacatga-------tgttttga
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          389164 26 +    434444 ttaaggagtacaacatga-------tgttttga
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          428011 26 -    438202 ttaaggagtacaacatga-------tgttttga
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477518 26 +  90373283 TCaaggagtacaacatga-------tgttttga
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1528131 26 -   1547936 TCaaggagtacaacatga-------tgttttga
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45870 25 +    168452 ttaaggagtacaacataa-------tg-tttga
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412880 26 - 210400635 ttaaggagtacaacatga-------tgttttga
i calJac3.chr1                 I 4 C 0
s saiBol1.JH378105              64672112 26 -  72162052 ttaaagagtgcaacatga-------tgtaatga
i saiBol1.JH378105             I 4 C 0
s cebCap1.NW_016107851v1         1084685 26 +   1314817 ttaaagagtacaacatga-------tgttatga
i cebCap1.NW_016107851v1       I 19 C 0
s aotNan1.NW_018488791v1         6437298 26 -   6597006 ttaaagagtacaacatga-------tgttatga
i aotNan1.NW_018488791v1       I 4 C 0
s otoGar3.GL873538              19688279 33 -  27850971 tgtatcagtacagtacggtaggccttgttttgg
i otoGar3.GL873538             I 17 I 134
s dasNov3.JH570393               1790352 15 -   2296528 ---------AAAGGATGA-------TTTTTC--
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79158864 65 -  85426708 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=594999.000000
s hg38.chr14_GL000009v2_random     50745 74 +    201709 tataattatttctagtgaagtggttctt------ataatcaagcaaatcaacatattcattttcccacattattaccctt
s panTro5.chr9                  41730296 74 + 116767853 tataattatttctagtgaagtggttctt------ataatcaagcaaatcaacatattcattttcccacattattgccctt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96079994 74 - 114479721 tataattatttctagtgaagtggttctt------ataatcaagcaaatcaacatattcattttcccacattattgccctt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           16593 72 +     53730 tacaattatttctagtgaagtggttctt------ataatcaagcaaatcaacatattcctttctc--cattgttaccctt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847835 74 + 122973662 tataattacttctagtgaagtggttctt------gtaatcaagcaaatcaacatattcattttcccatgttgttaccctt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541624 73 - 111343173 tataattatttatagtgaagtcgttctt------atagtcaagcaaattaacatattcattgtcccacata-ttaccctt
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133562 74 - 111193037 tataatgatttccagtgaagtggttctt------atactccaacaaatcaacatattcattttcccgcatagttaccctt
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          389190 74 +    434444 tataattatttctagtgaagtggttctt------ataatcaagcaaatcagtatattcattttcccgctttgttaccttt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          428037 74 -    438202 tataattatttctagtgaagtggttctt------ataatcaagcaaatcaatatatccattttcctgcatcgttgccctt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477544 73 +  90373283 tataattatttctagtgaagtggttctt------ataatgaagcaaat-aatatattcattttcccacgttgttaccctt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1528157 74 -   1547936 tataattatttctagtgaagtggttctt------ataatcaagcaaatcaatatatccattttcctgcatcgttaccctt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45895 80 +    168452 tatacttattcccagtgaagtggttcttatactcatactcaagcaaatcaacatattcattttcccgcatagttaccctt
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412906 74 - 210400635 tataattatttgtagtgaagtggttctt------atagtcgagcaaattaacatattcattttcccacatagttaccctt
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64672138 73 -  72162052 tatattgattcatagagaagtggttctt------atagtcaggcaaattaacatgttcatcatctcacatagtta-cctt
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1084711 73 +   1314817 tatatttattcatagagaagtggttctt------atagtcaggcaaattaacatgttcatcatctcacatggtta-ccTT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6437324 71 -   6597006 tatatttattcatagagaagtggttctt------atagtcaggcaaattaacatgttcatcctctcac--GGTTA-CCTT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19688446 73 -  27850971 tgTATTtatatgtagtgaaatgattatt------atagtcaatcaaataaacatattaatcatctcacatggttaATCC-
i otoGar3.GL873538             I 134 C 0
s dasNov3.JH570393               1790367 19 -   2296528 -----TGATTTCTA---AACTGCTTTA-----------------------------------------------------
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79158864 65 -  85426708 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2943009.000000
s hg38.chr14_GL000009v2_random     50819 297 +    201709 tAAATACAAGTATTTCTAATGGAA-T-CTTC-AGAATCTTCCAAGTAGA-GCCATTTTAGAAGGCAGGAAGTTTT-ACCTGTTGAGCC--AT--ACATCACTG--------ATAGCCATT-TCTCTTCCCTGTCTACTTTGTTTGAACTGCTTGTTCAGTAGAAATCACCTTAGAAACAA---TGGTGCTTCTTTAGAATGATTTTAAAATTATAATTCCTTACAACAGGTATGCTCTTACACATCTTCTGTGT-----GAAAACACTATTTAGTGGGTAATTTGGTTTACTCTCA-GGGTAA-GTTTTTAAA------AACTGCAAGTCA
s panTro5.chr9                  41730370 303 + 116767853 tAAATACAAGTATTTCTAATGGAA-T-CTTC-AGAATCTTACAAGTAGA-GCCATTTTAGAAGGCAGCAAGTTTT-GTCTGTTGAGCC--AT--ACGTCACTG--------ATAGCCATT-TCTCTTCCCTGTCTACTTTGTTTGAACTGCTTGTTCAGTATAAATCACCTTAGAAACAA---AGATGCTTCTTTAGAACGATTTTAAAATTATAATTCCTTACAACAGGTATGCTCTTACACATCTTCGGTGT-----GAAAACGCTATTTAGTGGGTAATTTGGTTTACTCTCA-GGGCAA-CACTTTAAAGGTAACGACTGCAAGTCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96080068 303 - 114479721 tAAATACAAGTATTTCTAATGGAA-T-CTTC-AGAATCTTACAAGTAGA-GCCATTTTAGAAGGCAGCAAGTTTT-GCCTGTTGAGCC--AT--AAGTCACTG--------ATAGCCATT-TCTCTTCCCTGTCTACTTTGTTTGAACTGCTTGTTCAGTATAAATCACCTTAGAAACAA---AGGTGCTTCTTTAGAACGATTTTAAAATTATAATTCCTTACAACAGGTATGCTCTTACACATCTTCAGTGT-----GAAAACACGGTTTAGTGGGTAATTTGGTTTACTCTCA-GAGCAA-GACTTTAAAGGTAACGACTGCAAGTCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           16665 293 +     53730 tAAATATGAGTATTTCTAATGGAA-T-CTTC-AGAATCTCACAAGTAGA-GCCCTTTTAGAAGGCAGCAAGTGTT-ATCTGTTGAGCC--AT--A-ATCACTG--------GTAGCCATT-TCTCTTCCCTGTCTACTTTGTTTG-ACTGCTTGTTCAGTATAAATCACCTTA-AAACAC---AGGTGCTTCTTTAGAATGATTTTAAAATTATACTTGCTTACAACAGGTATGCTCTCACACATCTTCAGTGT-----GAAAACACTGTTTAGTGGGTAATTTGGTTT-CTCTCA-GGGCAA-GTTTTTAAA------AACTGCAAGTCA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40847909 297 + 122973662 tAAATACAAGTATTTGTAATGGAA-T-CTTC-AGAATCTTACAATTAGA-GCCATTTTAGAAGGCAGCAAGTTTT-ACCTTTTGAGCC--AG--ACATCACTG--------GTAGCCATT-TCTCTTCCCTGTCTACTTTGTTTGAACGGCTTGTTCAGTAGAAATCACCTTAGAAACAC---AGGTACTTCTTTAGAACGATTTTAAAATTATAATTCCTTACAACAGGTGTGCTCTCACACACCTTCGGTGT-----GAAAACACTGTTTATTGGGTAACTTGGTTTACTCTCA-GGGCAA-GTTTTTAAA------AACTGCAAGTCA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541697 287 - 111343173 tAAATACAAATATTTCT-ATGGAA-T-CTGT-AGAATCTTACAAGTAGA-GCTATTTTAGAAGGCAGCTAG-GTT-ACCTGTTGAGCT--GT--ACATCAGTG--------ATAGCCATT-TCTTTTCCC--------TCCTTTGAACTGCTTGTTCAGTAGAAATCACCTTAGAAACAC---ATATACTTATTTAGAATAATTTTAAAATTACAATTGCTTACAAGAGGTAGGCTCTCACACATCTTTGGTGT-----GAAAACACTGTTGAGTGGGTAATTTGGTTTACTCTCA-GGGCAA-CTTTTTAAA------AAATGCAAGTCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133636 276 - 111193037 tAAATACAAGTATTTCTAATGGAA-T-CTTT-AGAATCTCACAAGTGGA-GCCATTTTAGAAAGCAGCAAGTTTC-ACCTGGTGAGCC--GT--GCATCACTG--------ACAGCCGTT-TCTCTCCCCTGTCTACTTTGTTTGAACTGCTTGTTCAGTATAAATTACCTTAGAAACAC---GGGTGCTTCTTTAGG---------------------CTTACAACAGGTATGCTGTCACACATCTTCGGTGT-----GAAAACACCGTTTAGTGGGTACTTTGGTTTACTCTCA-GGGCAA-CGTTTTAAA------AACTGCAAGTCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          389264 297 +    434444 tAAATACAAGTATTTCTAACGGAA---CTTC-AGAATCTTACAAGTAGA-GCCATTTTAGAAGGCAGCAAGTATT-GCCTTTTGAGCC--AT--ACATCACTG--------ACAACCATTATCTCTTCCTTGTCTACTTTGTTTGAACTGCTTGTTCAGTATAAATCACCTTAGAAACAC---AGGTGCTCCTTTAGAATTATTTTAAAATTATAATTCCTTACAACAGATATGCTCTCACACATCTTCGATGT-----GAAAACACTGTTTAGTGGGTAATTTGGTTTACTCTCA-GGGCAA-GTTTTTAAA------AACTGCAAGTCA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          428111 297 -    438202 tAAATACAAGTATTTCTAATGGAA---CTTC-AGAATCTTACAAGTAGA-GCCATTTTAGAAGGCAGCAAGTTTT-GCCTTTTGAGCC--AT--ACATCACTG--------ACAACCATTATCTCTTCCTTGTCTACTTTGTTTGAACTGCTTGTTCAGTATAAATCACCTTAGAAACAC---AGGTGCTCCTTTAGAACAATTTTAAAATTATAATTCCTTACAACAGGTATACTCTCACACATCTTCGATGT-----GAAAACACTGTTTAGTGGGTAATTTGGTTTGCTCTCA-GGGCAA-GTCTTTAAA------AACTGCAAGTCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477617 297 +  90373283 tAAATACAAGTATTTCTAATGGAA-T-CTTT-AGAATCTCACAAGTGGA-GCCATTTTAGAAAGCAGCAAGTTTC-ACCTGGTGAACC--GT--GCATCACTG--------ACAGCCGTT-TCTCTCCCCTGTCTACTTTGTTTGAACTGCTTGTTCAGTATAAATCACCTTAGAAACAC---AGGTGCTCCTTTAGAATTATTTTAAAATTATAATTCCTAACAACAGATATGCTCTCACACATCTGCGATGT-----GAAAACACTGTTTAGTGGGTAATTTGGTTTACTCTCC-GGGCAA-GTTTTTAAA------AACTGCAAGTCA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1528231 297 -   1547936 tAAATACAAGTATTTCTAATGGAA---CTTC-AGAATCTTACAAGTAGA-GCCATTTTAGAAGGCAGCAAGTTTT-GCCTTTTGAGCC--AT--ACATCACTG--------ACAACCATTATCTCTTCCTTGTCTACTTTGTTTGAACTGCTTGTTCAGTATAAATCACCTTAGAAACAC---AGGTGCTCCTTTAGAACAATTTTAAAATTATAATTCCTTACAACAGGTATACTCTCACACATCTTCGATGT-----GAAAACACTGTTTAGTGGGTAATTTGGTTTGCTCTCA-GGGCAA-GTCTTTAAA------AACTGCAAGTCA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           45975 300 +    168452 tAAATACAAGTATTTCTAATGGAA-T-CTTT-AGAATCTCACAAGTGGA-GCCATTTTAGAAGGCAGCAAATTTC-ACCTGGTGAGCCGTGT--GCATCACTG--------ACAGCCGTT-TCTCTCCCCTGTCTACTTTGTTTGAACTGCTTGTTCAGTATAAATTACCTTAGAAACAC---AGGCGCTTCTTTAGAATGATTTTAAAATTATAATTGCTTACAACAGGTATGCTGTCACACATCTACGCTGT-----GGAAACACCATTTACTGGGTACTTTGGTTTACTCTCA-GGGCAACGTTTTTAAA------AACTGCAAGTCA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130412980 294 - 210400635 tAAATACAAGTATTTCTAATGGAA-T-CTTT-AGCATCTTACAAGGAGAGGCA-TTTTAGAAGGCAGCAACTGTT-ACCTGTTGAGCC--GC--ACATCATTG--------ACAGCCATT-TCTCTTTGCTGTCTAC---GTTTGCACTGCTTGTTCAGTAGAAATCACCTTAGAAACAC---ATGTACTTCTTTAGAACAATGTTTAAATTGTAATTTCTTACAAGAGGTATACTCTCAAACATCTTCGGTGT-----TAAAACACTGGTTAGCGGGTAATTTGGTTTACTCTCA-GGGCAA-CTTTAAAGA------AAATGCAAGTCA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64672211 295 -  72162052 tAAATACAAGTATTTCTAATTGCA-T-CCTC-AGAATCTTACAGGTAGA-GCC-TTCCAGAAGGCAGCGAGTGTT-ACCTGTTGAGCC--GT--ACATCACTG--------ACAGCCATT-TCTCTTTCCTCCTTACTTTGTTTGAATTACTTATTCAGTAGGAATCTTCTTAGAAACAT---GTGTACTTTTTTAGAACAACTTTTGAA-TATTCCTGCTTACAGCAGGTGTGCTCTCACATGTCTTTGGTGT-----TAAAACACTGTTTCGTGGGTAATTTGGTTTACTCTCA-GGGCAA-CTTTTTTAA------AAATGCAAGTCA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1084784 294 +   1314817 TAAATACAAGTATTTATAATTGCA-T-CCTC-AGAATCTTACAGGTAGA-GCC-TTCCAGAAGGCAGCAAGTGTT-ACCTGTTGAGCC--AT--ACATCACTG--------ACAGTCATT-TCTCTTTCCTCCTTACTTTGTTTGAATTACTTATTCAGTAGGAATCTTCTTAGAAACAT---GTGTACTTTTTTAGAACAACTTTTGAA-TATACTTGCTTACAGCAGGTATGCTCTCACATGTCTTTGGTGT-----TAAAACACTGTTTTGTGGGTAATTTGGTTTACTCTCA--GGCAA-ATTTTTTAA------AAATGCAAGTCA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6437395 296 -   6597006 TAAATACAAGTATTTCTAATTGCA-T-CCTC-AGAATCTTACAGGTAGA-GCC-TTCTAGAATGAAGCAAGTGTT-ACCTGTTGAGCC--GT--ACATCATTG--------ATAGCCATT-TCTCTTTCCTCCTTACTTTGTTTGAATTACTTATTCAGTAGGAATCTTCTTAGAAACAC---GTGTACTTTTTTAGAACAACTTTTGAATTATACTTGCTTACAGCAGGTATGCTCTCACATGTCTTTGGTGT-----TAAAACACTGTTTTATGGGTAATTTGGTTTACTCTCA-TGGCAA-CTTTTTTAA------AAATGCAAGTCA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19688519 304 -  27850971 ------CAAGTACTTCTAATGGCATT-CTTA-AGAATCTTA---ATAGA-GTTGTTCCAGAAGGCAGC-AGTGTT-ACCTTTTAAATT-TAT--ACACCATTATATAATATGTAGCCATT-TCTCTCCTTTTCCTACTTTGTTAGAATTTCTCAATTTTTAGAAATCTCCTTGCAAATACCGTATGTACCTCTTTAGAA--GTTTTTAAACTGTAATTGCATACAGTAGGTATGCTCTTATACATTTTCAGTGTTAAAAGAAAAAACTATTTAAATGGAAGTTTTGTTTACTGTTATGGACTC-CTGTGTTAA------AAATGCAAGTCA
i otoGar3.GL873538             C 0 I 269
s canFam3.chr2                  79158929 291 -  85426708 TAGATATAAATATGTGTAATGGCA-TCCTCC-AGAATCTTGTAATTACA-GCCATTCCAGAAGGTAGCAAGTATT-ACCTGTCAATCCATGT--ACATCACGG--------ACAGCCATT-TCTTTCCCTCCCCTA----ATTTGAATTTCTTGTTAGTTAGGAATC--CCTAGAATCAT---ATATACTCCTTTGGAACAGTTTTAAACCTATGGTTATATATAGTAGCTCTGCTCTGTCACATTTTCAGCAT-----TAAAACACTGTTTAATGGCACATTCTGTTTACTATCT-GG---A-AACTTAAAA------AAATGCAGGTCA
i canFam3.chr2                 I 65 I 1
s dasNov3.JH570393               1790386 295 -   2296528 TAAGCCCGAGTGTTTTTAGTGGCA-T-CCTCAAGAATATTGTCAGTGGA-GCCATTCTAGAAGGTGGCAAGTGTTAACCTTCTAAGCT--TTTGACAACACTG--------ATAGCC-TT-TCTCTCCCATCCTGCCTTTGCTTGAGTTACTTGTTAGTTAGGAATCCCCCTAGAAATAT---ATGTAATTTGTTAAAACAGTTTTAAAAATGTAATTGTGTGTAGGAGGTATGATGTGACACATTTCCAGTGT-----TAAATTAC--TTTAATTGGAAATTTCATTTACCATTA-TGGCAA----CTTAAA------AAATGTAAGTCC
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2198964.000000
s hg38.chr14_GL000009v2_random     51116 215 +    201709 -TTAAGAATCATTTAAGGAAAAATGAAATATTAAGCATTTG-----TC-TT-TGCTACCTTTACAGATCGAATAAGAAAATAGCAATGATCAGTATC-AGCTCTTTATGGAGAAAGAGCAGGTGAAATATTTTCTCAGCACTCTTCCTACAAGGTGAGGTCGAGAGTCACCTTGTGTTGAAAATCTTACTA---GTA---TAGGACTCAACAGAAAATATATTCCCCAAA-
s panTro5.chr9                  41730673 216 + 116767853 -TTAAGAATCATTTAAAGAAATATGAAATACTAAGCATTTG-----TC-TT-TGTTATCTTTACAGATCGAATAAGAAAATAGCAATGATCAGCACCAAGCTCCTTATGGAGAAAGAGCAGGTGAAATATTTTCTCAGCACTCTTCCTACAAGGCGAGGTCGAGAGTCACCTTGTGTTGAAAATCTTACTA---GTA---TAGGACACAACAGAAAATATATTCCCCAAA-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96080371 216 - 114479721 -TTAAGAATCATTTAAGGAAATATGAAATACTAAGCATTTG-----TC-TT-TGTTATCTTTACAGATCGAATAAGAAAATAACAATGATCAGCAACAAGCTCCTTATGGAGAAAGAGCAGGTGAAATATTTTCTCAGCACTCTTCCTACAAGGTGAGGCTGAGAGTCACCTTGTGTTGAAAATCTTACTA---GTA---TAGGACTCAACAGAAAATATATTCCCCAAA-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           16958 211 +     53730 -TTAAGAATCA-TTAAGGAAAAATGAAATACTAAGCGTTTG-----TC-TT-TGCTATCTTTACAGATCAAATAAGAAAATAGCAGTGATCAGCAA--AGCTCCTTATGGAGAAAGAGCAGATGAAATATTTTCTCAGCACTCTTCCTACAAGGCGA-GCCCAGAGTCACCTTGTGTTGAAAATCTTACTA---GTA---TAGGACTCAACAGAAAATATATT-CCCAAA-
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40848206 216 + 122973662 -TTAAGAATCATTCAAGGAAAAATGAAATACTAAGCATTTG-----TC-TT-TGCTCTCTTTACAGATCAGATAAGAAAATAGCAGTGATCAGCACCAAGCTCCTTATGCAGAAAGAGCGGATGAAATATTTTCTCAGCACTCTTCCTACGAGGGCAGACCCAGAGTCACCTTGTGTTGAAAATCTTACTA---GTA---CAGGACTCAACAGAAAATATATTCCCAAAA-
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   541984 216 - 111343173 -TTAAGAATCATTCAAGGAAAAATGAAATACTAAGCATTTG-----TC-TT-TGCTATCTTTACAGATCGAATAAGAAAATAGCAATGATCAACACCAAGCTCCTTATGGAGAAAGAGCGGATGAAATATTTTCTCAGCACTCTTCCTACGAGGCCACACCCAGAGTTACCTTGTGCTGAAAATCTTAATA---GTA---CAGGACTCAACAGAAAATATATTCCCAAAA-
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111133912 216 - 111193037 -TTAAGAATCATTTAAGGAAAAATGAAATACTAAGCATTTG-----TC-TT-TGCTGTCTTTACAGATCGAATAAGAAAATAGCAATGATCAGCACCAAGCTCCTTATGGAGAAAGAGCGGATGAAACATTTTCTCAGCACTCTTTCTACAAGGCGAGACCCAGAGTCACCTTGTGTTGGAAATCTTACTA---GTA---GAGGACTCAACAGAAAATATGTTCCCCAAA-
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          389561 216 +    434444 -TTAAGAATCATTTAAGGAAAAATGAAACACTAAGCATTTG-----TC-TT-TGCTATCTTTACAGATCGAATAAGAAAATAGCAATGATCAACACCAAGCTCCTTATGGAGAACGAGCAGGTGAAATATTTTCTCAGCACTCTTCCTATAAGGCGAGACCCAGAGTCACCTTGTGTTGAAAATCTTCCCT---GTA---TAGGACTCAACAGAAAATATATTCCCCAAA-
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          428408 216 -    438202 -TTAAGAATCATTTAAGGAAAAATGAAATACTAAGCATTTG-----TC-TT-TGCTATCTTTACAGATCCAATAAGAAAATAGCAATGATCAACACCAAGCTCCTTATGAAGAACAAGCAGGTGAAATATTTTCTCAGCACTCTTCCTACAAGGCGAGACCCAGAGTCACCTTGTGTTGAAAATCTTCCCA---GTA---TAGGACTCAACAGAAAATATATTCCCCAAA-
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66477914 216 +  90373283 -TTAAGAGTCATTTAAGGAAAAATGAAATACTAAGCATTTG-----TC-TT-TGCTATCTTTACAGATCGAATAAGAAAATAGCAATGATCAGCACCAAGCTCGTTATGGAGAAAGAGCGGATGAAATATTTTCTCAGCACTCTTCCTACAAGGCGAGACCCAGAGTCACCTTGTGTTGGAAATCTTACTA---GTG---GAGGACTCAACAGAAAATATATTCCCCAAA-
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1528528 216 -   1547936 -TTAAGAATCATTTAAGGAAAAATGAAATACTAAGCATTTG-----TC-TT-TGCTATCTTTACAGATCCAATAGGAAAATAGCAATGATCAACACCAAGCTCCTTATGAAGAACAAGCAGGTGAAATATTTTCTCAGCACTCTTCCTACAAGGCGAGACCCAGAGTCACCTTGTGTTGAAAATCTTCCCA---GTA---TAGGACTCAACAGAAAATATATTCCCCAAA-
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           46275 216 +    168452 -TTAAGAATCATTTAAGGAAAAATGAAATACTAACCATTTG-----TC-TT-TGCTATCTTTACAGATCAAATAAGAAAATAGCAATTATCAGCACCAAGCTCCTTATGGAGAAACAGCACATGAAAAATTTTCTCAGCACTCTTCCTACAAGACGAGACCCAGAGTCACCTTGTGTTAGAAATCTTACTA---GTA---TAGGACTCAACAGAAAATATATTCCCCAAA-
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130413274 210 - 210400635 -TTAAGAATTATTAAAAGAAAAAGGAAATACTAAGCATTTG------------TCTTTCTTTACAGATCGAAGAAGAAAATAGCAGTGATCAGCAACAAGTTTCTTATGGAGAAAGAGGGGATGAAATCTTGTCTCAGCACTCTTCCGAGGAGGCCAGACCCAGAGTCACCTTGTGTTGAAAATCTTAATA---GTA---TGCGGTGCAACAG-AAATATATTCCCGAAA-
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64672506 221 -  72162052 -TTTAGATCATTTAAGAAAAAAATAAAATACTAAGCATTTGGGTTTTT-TT-TGCTATCTTTTCAGATCGAATAAAATAATCACAAGAGTCCACAGCATGCTCCATATGGAGAAAAAGCAGATGACACCTTTTCTCAGCACTCTTCCTGTGAGGCCAGACCCAGGGTCATCTCAGGTTGGAAATCTTAATA---GTA---TGTGTCTCCACAGAAAATATATTCCAAAAA-
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1085078 218 +   1314817 -TTTAGATCATTTAAGAAAAACATAAAATACTAAGCCTTTG---TTTT-TT-TGCTATCTTTTCAGATCGAATAAGATAATCACAAGAGTCCGCAGCATGCTCCATATGGAGAATAGGCAGACGACACCTTTTCTCAGCCCTCCTCCTGTGAGGCCAGACCCAGGGTCACCTGGGGTTGGAAATCTTAATA---GTA---TGGGTCTCCACAGAAAATATATTCCAAAAA-
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6437691 219 -   6597006 -TTTAGATCATTTAAGAAAAAAATAAAATACAAAGCATTTG--TTTTT-TT-TCCTATCTTTTCAGATCGAATAAGATAATCACAAGAGTCAGCAGCGTGCTCGATATGGAGATAAAGCGGATGACACATTTTCTCAGCACTCTTCCTGTGAGGCCAGACCCAGAGTCACCTCGGGTTGGAAATCTTAATA---GTA---TGGGTCTCCACAGAAAATATATTCCAAAAA-
i aotNan1.NW_018488791v1       C 0 I 28
s otoGar3.GL873538              19689092 220 -  27850971 -TTAGGAATCATTTAGAGAAAAATGAAGTCCTGAGCTTTTG-----TCTTT-TGCAATCCTCACAGAACTAATGAGAAGCTAGCAGAGGTCAGTACCAAACTGCTTGTGGAGAAACAGCAGACCAGATCTTTACTCACCACTCTTGCTACAAGGCCAGTCCTTGAGTCACCTTGTGTTGGAAATGTTAATAATGGTT---TAGCTCTCAATAGAAAACATACTCCAAGAG-
i otoGar3.GL873538             I 269 C 0
s canFam3.chr2                  79159221 220 -  85426708 -TTAGGAATGATTTGGAGAAAAATGAAACACTAAGCATTTG-----TG-TTGTGTAATCTTCACAGGACTAGTGAGAGGCTGGCAGATATCACTACCAAATATCTGGTGGAGAAACAGCAGAACAGACCTTTCCACAGCACTCTTACTATGAGACCCGTCTTGGAACTGCCTTATGTTGGAAATCTGACTA---GTAGTTTACTGCTGGATAGAAATGTTACTCCAAGAG-
i canFam3.chr2                 I 1 C 0
s dasNov3.JH570393               1790681 219 -   2296528 TTGAGGAGTCATTT-GGGAAAAAGGAAATCCTAAGCATGTG-----TC-TT-TTGTATTGTTCCAGGACTAATGAACGGCTAGCAGAGATCAGCACCAAACTTATTGTGGAGAAACAACAGAACAGATCTTTAGTCAACACTCTTACCGTGAGGCCAGTCCTGGAGCCACCCTGTGTTGGAAATCTTAATA---ATAGTTTAGTACTCAATAG-AAATATTTTTCCAAGAG
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=155692.000000
s hg38.chr14_GL000009v2_random     51331 28 +    201709 T-------------GCCC-----------------------------GTAAGAATTCCTACTTCAAACC-T
s panTro5.chr9                  41730889 29 + 116767853 T-------------GCCC-----------------------------ATAAGAATTCCTACTTCAAACCGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96080587 29 - 114479721 T-------------GCCA-----------------------------GTAAGAATTCCTACTTCAAACTCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           17169 28 +     53730 T--------------CCC-----------------------------GTAAGAATTCCTATTTCAAACCCT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40848422 29 + 122973662 T-------------GCCC-----------------------------ATAAGAATTCCTACTTCAAACCCA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542200 29 - 111343173 C-------------GCCC-----------------------------ATAAGAATTCCTACTTCAAACCCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111134128 29 - 111193037 T-------------GTCC-----------------------------ATCAGAATTCCTACTTCAAACCCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          389777 29 +    434444 T-------------GCCC-----------------------------GTAAGAATTCCTACTTCAAATCCA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          428624 29 -    438202 T-------------GCCC-----------------------------GTAAGAATTCCTACTTCAAATCCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66478130 29 +  90373283 T-------------GCCC-----------------------------GTAAGAATTCCTACTTCAAATCCA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1528744 29 -   1547936 T-------------GCCC-----------------------------GTAAGAATTCCTACTTCAAATCCA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           46491 29 +    168452 T-------------GCCC-----------------------------ATCAGAATTCCTACTTCAAACCCA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130413484 70 - 210400635 TATATTTCTACTTCAAACCCACAGACTTCAAATAACTGGAAGTATTTGTAAGAATTTCTACTTCAAACCC-
i calJac3.chr1                 C 0 I 1
s saiBol1.JH378105              64672727 27 -  72162052 --------------AAAC-----------------------------ATAAGTATCCCTACTTCAAGCCC-
i saiBol1.JH378105             C 0 I 1
s cebCap1.NW_016107851v1         1085296 27 +   1314817 --------------AACC-----------------------------ATAAGTATCTCTACTTCAAGCCC-
i cebCap1.NW_016107851v1       C 0 I 1
s otoGar3.GL873538              19689312 28 -  27850971 -------------AAAAC-----------------------------TTACTGATCCCTACCTTGAACCC-
i otoGar3.GL873538             C 0 I 1
s canFam3.chr2                  79159441 29 -  85426708 -------------AAAAT-----------------------------GTAGTGATTCCTACCTCAAGCTCG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1790900 28 -   2296528 -------------AAAAT-----------------------------TTAGTGATTCCTCCCTCAAGCCC-
i dasNov3.JH570393             C 0 I 1
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6437910 28 -   6597006 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=3146469.000000
s hg38.chr14_GL000009v2_random     51359 292 +    201709 CAGACTTCAAATAACTGCC---AGAACTACTTGACTGAGGTTAGTT-ATATGACCGTTTCTCTT-TAGGGTTTCATTTCTCTAGCGTAATTCTTGTTTATAA-TTTGGTGAAATACTGAGTTGTTCTGTTGACTTTTGCATGTGAAGTAAAGATCATAATTAGCTGTGTTAACACAGAAAGGAAATGGGAACTTTAC---A---TTTTTTAATTCCCTGGAGCTCTCATTTTCAAGAGATATC---------CATTTGCTAACTTTATTCAATAAA---TGTGACTAAACTGACATGATTGA----AATGTCTTTAAAAG
s panTro5.chr9                  41730918 292 + 116767853 CAGACTTCAAATAACTGCC---AGAACTACTTGACTGAGGTTAGTT-ATATGACCGTTTCTCTT-TAGGGTTTCATTTCTCTAGCATAATTCTTGTTTATAA-TTTGGTGAAATACTGAGTTGTTCTGTTGACTTTTGCATGTGAAGTAAAGATCATAATTAGCTGTGTTAACACAGAAAGGAAATGGGAATTTTAC---A---TTTTTTAATTCCCTGGAGCCCTCATTTTCAAGAGATATC---------CATTTGCTAACTTTATTCAATAAA---TGTGACTAAACTGACACATTTAA----AATGTCTTTAAAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96080616 292 - 114479721 CAGACTTCAAATAACTGCC---AGAACTACTTGACTGAGGTTAGTT-ATATGACCGTTTTTCTT-TAGGGTTTCATTTCTCTAGTGTAATTCTTGTTTTTAA-TTTGGTGAAATACTGAGTTGTTCTGTTGACTTTTGCATGTTAAGTAAAGATCATAATTAGCTGTGTTAACACAGAAAGGAAATGGGAACTTTAC---A---TTTTTTAATTCTCTGGAGCTCTCATTTTCAAGAGATATC---------CATTTGCTAACTTTATTCAATAAA---TGTGACTAAACTGACACGTTTAA----AATGTCTTTAAAAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           17197 283 +     53730 CAGACTTC-AATAACTGCA---AGAACTACTTGACTGAGGTT-GTT-ACATGACCGTTTCTCTT-TAGGGTTTCATTTCTCTA-TATAATTCTTGTTTTTAA-TTTGGTGAAATACTGA---GTTCTGTTGACTTATGCATGTTAAGTAAAGATCATAATTAGCTGTGTTAACACAGAAAGGAAATGGGAACTTTAC---A---TTTTTTAATTCCCTGGAGCTCTCATTTT--AGAGATATC---------CATTT-CTAACTTTATTCAATAAA---TGTGACTAAACTGACACGTTTAA----AATGTCTTTAAAAG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40848451 292 + 122973662 CAGACTTCAAATAACTGCA---AGATCTCCTTGACTGAGGTTAGTT-ATATGACCGTTTCTGTT-TTGGGTTTCATTTCTCTAATATAATTCTTGTTTTTAA-TTTGGTGAAATACTGAGTTGTTCTGTTGACTTATGCATGTTAAGTAAAGATTATAATTAGCTGTGTTAACACAGAAAGGAAATGGGAACTTTAC---A---TTTTTTAATTCCCTGGAGCTCTTATTTTCAAGAGATACC---------CATTTACTAATTGTATTCAATAAA---TGTGACTAAACTGACATGTTTAA----AATATCTTTAAAAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542229 291 - 111343173 CAGACTTCAAATAACTGCA---AGAACTCCTTGACTGAGGTTAGTT-ATATGACCGTTTCTCTT-TTGGCTTTCATTTCTTTGATATAATTCTTGTTTATAA-TTTGGTGAAATACTGAGCTGTTCTGTTGACTTATGCATGTTAAGTAAAGATTATAATTAGCTGTGTTAACACAGAAAGGAAATGGGAACTTTAC---A---TTTTTTAATTCCCTGGAGCTCTCATTTTCAAGAGATACC---------CA-TTGCTAACTTTGTTCAATAAA---TGTGACTAAACTGACACATTTAA----AATTTCTTTAAAAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111134157 292 - 111193037 CAGACTTCAAATAACTGCA---AGAACTACTTCACTGAGGTTAGTT-ATATGATCGTTTCTCTT-TTGGCTTTCATTTCTCTAATATAATTCCTCTTTGTAA-TTTGGTGAAATACTGAGTTGTTCTGTTGACTTATGCATGTTAAGTAAAGATCATAATTAGCTATGTTAACACAGAAAGGAAATGGGAACTTTTC---A---TTTTTTAATTCCCTGGAGCTCCCATTTTCAAGAGATACC---------CATTTCCTAGCTTTATTCAATACA---TGTGACTAAACTGACACATTTAA----AATGTCTTTAAAAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          389806 292 +    434444 CAGACTTCAAATAACTGCA---AGAACTACTTGACTGAGGTTAGTT-ATATGACCGTTTCTCTT-TTGGGTTTCACTTCTCTAATATAATTCTTGTTTTTAA-TTTGGTGAAATACTGAGTTGCTCTGTTCATTTATGCGTTTTAAGTAAAGATCATAATTAGCTGTGTTAGCACAGAAAGGAAATGGGCACTTTAC---A---TTTTTTAATTCCCTGGAGCTCTCATTTTCAAGAGATACC---------CATTTGCTAACTTTATTCAATAAA---TGTGACTAAACTGACATGTTTAA----AATGTCTTTAAAAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          428653 292 -    438202 CAGACTTCAAATAACTGCA---AGAACTACTTGACTTAGGTTAGTT-ATATGACCGTTTCTCTT-TTGGGTTTCACTTCTCTAATATAATTCTTGTTTTTAA-TTTGGTGAAATACTGAGTTGTTCTGTCCATTTATGCATGTTAAGTAAAGATCATAATTAGCTGTGTTAGCACAGAAAGGAAATGGGCACTTTAC---A---TTTTTTAATTCCCTGAAGCTCTCGTTTTCAAGAGATACC---------CATTTGCTAACTTTATTCAATAAA---TGTGACTAAACTGACATGTTTAA----AATGTCTTTAAAAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66478159 292 +  90373283 CAGACTTCAAATAACTGCA---AGAACGACTTGACTGAGGTTAGTT-ATATGACCGTTTCTCTT-TTGGGTTTCACTTCTCTAATATAATTCTTGTTTTTAA-TTTGGTGAAATACTGAGTTGTTCTGTTCATTTATGCATGTTAAGTAAAGATCATAATTAGCTGTGTTAACACAGAAAGGAAATGGGAACTTTAC---A---TTTTTTAATTCCCTGGAGCTCTCATTTTCAAGAAATACC---------CGTTTGCTAACTTTATTCAATAAA---TGTGACTAAACTGACATGTTTAA----AATGTCTTTAAAAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1528773 292 -   1547936 CAGACTTCAAATAACTGCA---AGAACTACTTGACTTAGGTTAGTT-ATATGACCGTTTCTCTT-TTGGGTTTCACTTCTCTAATATAATTCTTGTTTTTAA-TTTGGTGAAATACTGAGTTGTTCTGTCCATTTATGCATGTTAAGTAAAGATCATAATTAGCTGTGTTAGCACAGAAAGGAAATGGGCACTTTAC---A---TTTTTTAATTCCCTGGAGCTCTCGTTTTCAAGAGATACC---------CATTTGCTAACTTTATTCAATAAA---TGTGACTAAACTGACATGTTTAA----AATGTCTTTAAAAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           46520 292 +    168452 CAGACTTCAAATAACTGCA---AAAACTACTTGACTGAGGTTAGTT-ATATGACCGTTTCTCTT-TTGGCTTTCATTTCTCTAATGTAATTCTTGTTTGTAA-TTTGGTGAAATACTGAGTTGTTCTGTTGACTTATGCATGTTAAGTAAAGATCATAATTAGCTATGTTAACACAAAAAGGAAATGGGAACTTTAC---A---TTTTTTAATTCCCCGGAGCTCTCATTTTCAAGAGATACC---------AATTTGCTAACTTTATTCAATACA---TGTGACTAAACTGACACATTTAA----AATATCTTTAAAAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130413555 300 - 210400635 CAGACTTAAAATAACTGGA---AGAACTACTTGACTGAGGTTAGTT-ATATTATCCTTTCTCTT-TTGTGTTTCATTTCTGGAATATAATTCTTGTTTTTAA-TTTGGCAAAATATTGAGTTGTTCTGTTGGCTTATGCATGTTAAGTAAAGATCATAATTAGCTGTGTTAACACAGAAAGAAAACAGGAACTTTAC---A---TTTTTTAATTCCCTGGAACTCTCATTCTCAAGAGATACCATTCTCAAGAGTTTACTAACTTTATTCAATACA---TGTAAAT-AACTGACACATTAAA----AATTTCTTTAAAAG
i calJac3.chr1                 I 1 C 0
s saiBol1.JH378105              64672755 272 -  72162052 CAGACTTCAAATAACAGCA---TGAATGACTTGACCAAGGTTAGTT-GTATTACCTTTTCTCTT-CTGGGTT--------------------TTGTTTTTAA-TTTGGTGAAATGCTGAGTTGTTCAATTGACTTATGCATGTTAAGTAAAGATCATAATTAGCTGTGTTGATACAGGAAAGAAATGGAAACTTTAC---A---TTTTATAACTCCCCGGAGCTCTCATTTTCAAGAAATACT---------TATTTGTTAACTTTATTTAATAAA---TGTAAGTAAACTGACACATTTTA----AATTTATTTAAAAT
i saiBol1.JH378105             I 1 C 0
s cebCap1.NW_016107851v1         1085324 272 +   1314817 CAGACTTCAAATAACAGCG---TGAACGACTTGACCAAGGTTAGTT-GTATTACCTTTTCTCTT-TTGGGTT--------------------TTGTTTTTAA-TTTGGTGAAATGCTGAGTTGTTCAATTGACTTATGCATGCTAAGTAAAGATCATCATTAGCTGTGTTAATACAGGAAGGAAATGGAAACTTTAC---A---TTTTGTAAGTCCCCGGAGCTCTCATTTTCAAGAAATACT---------TATGTGTTAACTTTATTTAATAAA---TGTAAGTAAACTGACACATTTTA----AATTTACTTAAAAT
i cebCap1.NW_016107851v1       I 1 C 0
s aotNan1.NW_018488791v1         6437938 248 -   6597006 CAGACTTCAAATAACAGCA---TGAAGGACTTGACCAAGCTTAGTT-TTATTACCTTTCCTCTT-TTGGGTT--------------------TTGTTTTTAA-TTTGGTGAAATGCTCAGTTGTTCGATTGACTTATACATGTTAAGTAAAGATTGTAATTAGCTGTGTTAATACAGGAAGGAAGTGGA------------------------------GTGCTTTCATTTTCAAGAGATACT---------TATTTGTTAACTTTATTTAATAAA---CGTAACTAAACTGACACATTTTA----AATTTATTTAAAAT
i aotNan1.NW_018488791v1       I 28 C 0
s otoGar3.GL873538              19689341 300 -  27850971 CGGGCTTCAAATAATAGCATGGAGAGCTACTTGACCAAGGTTAGTTAATGTTATCTTTCTTCCT-TTGAGTTTCATGTTTCTGATACAATTTTTGTTTTTAA-TTTGGTGAAATACTGAGTTGTTTAATTGATGTATGCGTGTTAAGTAAATGTCCTAATTATCTGTGTTAATAAAGAAGGGAAACAGAAATTTTACA--A---TTTTGTGGGTCCCTGGAGCTATCATTTTCAAGAGATACC---------CATTTGTTAACTTTATTCAATTCAGTTTGTAGCTAAACTGACACATTTTA----AATTTCTTGAAAAG
i otoGar3.GL873538             I 1 C 0
s canFam3.chr2                  79159470 298 -  85426708 CGCCCTTCAAATAACAGCATTGATACTTACTTGACCAAGGTCAGTT-ATATTATCTTTTCTTTTCTTGAGTTTCAGATTTCCAATAAAATTTTTGTTTTTAC-TTTGGTGAAATTCTGAGTTA----ACTGAATAATGCTCAGTAAGTAAAAGTGATACTTGTTTGTGCTAATAAGGAAATAGGACAGAAATTTTATGGTA---TTTTTTTAGTTCCTGGAGCTCTTATTTTCAAGAGATACC---------AA-TTATTAATTTTATTCAATAAA---TACAACTAAACTAACACAGTCTATCTTATTAtttttaaaag
i canFam3.chr2                 C 0 I 233
s dasNov3.JH570393               1790929 289 -   2296528 CGGTCTTCAAATAACAGCATGGAGACCTACTTGACCAAGGTTAGTT-CTGTTCTCTTTTTGCCT-T-GGGTTTTAGGTCTCTGACACAGTTCTTGTTTTTAATTTTGGTGAAATATTGAGCTGCTTAATT-ACTTTAGCACCATAAGTAAAGATCCTAATTATCTGAGCTAAT---GAAAAGATACAGAAATTTTAC---AGTTCTTTTTCAAAACCTGGATCTCTCATTTTCAAGATCTAGC---------CATTATTAAACTTT-----ATAAA---TGTGACTAAATTGGCACATTTTA----CATCTCTTAAAAAG
i dasNov3.JH570393             I 1 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=85442.000000
s hg38.chr14_GL000009v2_random     51651 6 +    201709 CTGCAT
s panTro5.chr9                  41731210 6 + 116767853 CTGCAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96080908 6 - 114479721 CTGCAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           17480 6 +     53730 CTGCAT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40848743 6 + 122973662 CTGCAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542520 6 - 111343173 CTGCAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111134449 6 - 111193037 CTGCAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390098 6 +    434444 CTGCAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          428945 6 -    438202 CTGCAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66478451 6 +  90373283 CTGCAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1529065 6 -   1547936 CTGCAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           46812 6 +    168452 CTGCAT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130413855 6 - 210400635 CTGCAT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64673027 6 -  72162052 CTGCAT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1085596 6 +   1314817 CTGCAT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6438186 6 -   6597006 CTGCAT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19689641 6 -  27850971 CTGCAT
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1791218 6 -   2296528 CTGTAT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79159768 233 -  85426708 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=916131.000000
s hg38.chr14_GL000009v2_random     51657 94 +    201709 TTAAGTTAGGTTTTAGAAATTGCATGTTATTGCCTGATAACTGATGATATACTTTGAGATGCTCTGGCTTACTCTCTAATTGATTGT--------AGTTTAG
s panTro5.chr9                  41731216 94 + 116767853 TTAAGTTAGGTTTTAGAAATTGCATGTTATTGCTAGATAACTGATGATATACTTTGAGATGCTTTGGCTTACTCTCTAATTGATTGT--------AGTTTAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96080914 94 - 114479721 ATAGGTTAGGTTTTAGAAATTGCATGTTATTGCCTGATAACTGATGATATACTTTGAGATGCTTTGGCTTACTCTCTAATTGATTGT--------AGTTTAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           17486 93 +     53730 TTAAGTTAGGTTTTAGGAATTGCATATTATTGCCTTATAACTGATGATATACTTTGAGAT-CTTTGGCTTACTCTCTAATTGATTGT--------AGTTTAG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40848749 94 + 122973662 TTAAGTTAGGTTTTAGAAATTGCATGTTATTGCCTGATAACTGACGATATACTTTGAGATGCTTTGGCTTTCTCTCTAATTGATTGT--------AGTTTAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542526 84 - 111343173 TTAAGTTAGGTTTTAGAAAATGCATGTTATTGCCTAAAAACTGACAGTATACTTTGAGATTCTTTG------TCTTTG----ATTGT--------AATTTCT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111134455 90 - 111193037 TTAAGTTAGGTTTTAGAAATTGCATGTTATTGCCTAATAACTGACGATATACCTTGAGATGCTTTGGCTTACTCTCTA----ATTCT--------AGTTTAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390104 94 +    434444 TTAAGTTAGGTTTTAGAAATAGCATGTTATTGCCTGATAACTGATGATATACTTTGAGATGCTTTGGCTTACTTTCTAACTGATCAT--------AGTTTAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          428951 98 -    438202 TTAAGTTAGGTTTTAGAAATAGCATGTTATTGCCTGATAACTGATGATATACTTTGAGATGCTTTGGCTTACTTTCTA----ACTGCATCCGTCAAGTTTAG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66478457 94 +  90373283 TTAAGTTAGGTTTTAGAAATAGCATGTTATTGCCTGATAACTGATGATATACTTTGAGATGCTTTGGCTTACTTTCTAACTGATTGT--------AGTTTAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1529071 94 -   1547936 TTAAGTTAGGTTTTAGAAATAGCATGTTATTGCCTGATAACTGATGATATACTTTGAGATGCTTTGGCTTACTTTCTAACTGATCGT--------AGTTTAG
i manLeu1.NW_012105442v1       C 0 I 9647
s colAng1.NW_012121088v1           46818 94 +    168452 TTAAGTTAGGTTTTAGAAATTGCATGTTATTGTCTGATAACTGACAATATACCTTGAGATGCTTTGACTTACTCTCTAATTAATTCT--------AGTTCAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130413861 51 - 210400635 TTAAGTTAGGTTTTAGAAATTGCATGTT-TTACCTAATAACTGGAGGTATAC--------------------------------------------------
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64673033 94 -  72162052 TTAAATTAGGTTTTAGAAATGGCATGTTATTGCCTGATAACCGACAGTATACTTGGAGATGCTTTGGGTTACTTTCTAATTGATTGT--------AGTTGGG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1085602 94 +   1314817 TTAAGTTAGGTTTTAGAAATTGCATGTTATTGCCTGATAGCCGACAGTATACTTGGAGATGCTTTGGGTTACTTTCTAATTGATTGT--------AGTTGGG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6438192 93 -   6597006 TTAAGTTAGGTTTTAGAAATTGC-TGTTATTGCCTGATAACCGACAGTGTACTTGGAGATGCTTTGGGTTACTTTCTAATTGATTGT--------AGTTGGG
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19689647 90 -  27850971 TTAAGTTA----TTAGAAATCAAATATTATTGCCTAATAACTAAAGGTATACTTTGAGATACTTTGGCTTAATTTTTAATTGATTTT--------AGTTTGG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79160001 92 -  85426708 TTAAATTGGATTTTGGAAAGTAAATATTATTACATACTAACCAGAAGTACACTT--AGATGCTTTAACTTATTTTCTGATTAGCAAT--------AGTTTAT
i canFam3.chr2                 I 233 C 0
s dasNov3.JH570393               1791224 82 -   2296528 TTAAATTAGGTTTTAGAAAG-------TATTGCCTAGTAAGCA-----ATACTTTGAGATGCTTTGGCTTACTTTCTTGTTAATTTC--------CGTTCAG
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=75826.000000
s hg38.chr14_GL000009v2_random     51751 10 +    201709 CTGTGGTTCA
s panTro5.chr9                  41731310 10 + 116767853 CTGTGGTTCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081008 10 - 114479721 CTGTGGTTCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           17579 10 +     53730 CTGTGGTTCA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40848843 10 + 122973662 CTGTGGTTCA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542610 10 - 111343173 CTGTGGTTCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111134545 10 - 111193037 TTGCAGTGCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390198 10 +    434444 CTGTGGTTCA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429049  9 -    438202 CTGT-GTTCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66478551 10 +  90373283 CGGTGGTTCA
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           46912 10 +    168452 TTGCGGTGCA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64673127 10 -  72162052 CTATGGTTCA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1085696 10 +   1314817 CTATGGTTCA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6438285 10 -   6597006 CTATGGTTCA
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19689737 10 -  27850971 CAGTGGTTCA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79160093 10 -  85426708 AAGAAGTTCA
i canFam3.chr2                 C 0 I 20
s dasNov3.JH570393               1791306 10 -   2296528 CAGTTGCTCA
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130413912  0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e manLeu1.NW_012105442v1         1529165 9647 -   1547936 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=9977.000000
s hg38.chr14_GL000009v2_random     51761  4 +    201709 -TA-----------------CC
s panTro5.chr9                  41731320  4 + 116767853 -TA-----------------CC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081018  4 - 114479721 -TA-----------------CC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           17589  4 +     53730 -TA-----------------CC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40848853  4 + 122973662 -CA-----------------CC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542620  4 - 111343173 -TA-----------------TC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111134555  4 - 111193037 -TA-----------------CT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390208  4 +    434444 -CA-----------------CC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429058  4 -    438202 -CA-----------------CC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66478561  4 +  90373283 -CA-----------------CC
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           46922  4 +    168452 -TA-----------------CT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64673137  4 -  72162052 -TA-----------------CC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1085706  4 +   1314817 -TA-----------------CC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6438295  4 -   6597006 -TA-----------------CC
i aotNan1.NW_018488791v1       C 0 I 3167
s otoGar3.GL873538              19689747 21 -  27850971 -TAAGACTTTTAAAGTTCTGCC
i otoGar3.GL873538             C 0 C 0
s dasNov3.JH570393               1791316  4 -   2296528 GGA-----------------C-
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130413912  0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79160103 20 -  85426708 I
e manLeu1.NW_012105442v1         1529165 9647 -   1547936 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=3221.000000
s hg38.chr14_GL000009v2_random     51765 2 +    201709 AC-
s panTro5.chr9                  41731324 2 + 116767853 AC-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081022 2 - 114479721 AC-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           17593 2 +     53730 AC-
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40848857 2 + 122973662 AC-
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542624 2 - 111343173 AT-
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111134559 2 - 111193037 AC-
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390212 2 +    434444 GC-
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429062 2 -    438202 CC-
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66478565 2 +  90373283 CC-
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           46926 2 +    168452 AC-
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64673141 2 -  72162052 AC-
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1085710 2 +   1314817 AC-
i cebCap1.NW_016107851v1       C 0 I 378
s otoGar3.GL873538              19689768 1 -  27850971 -C-
i otoGar3.GL873538             C 0 I 1
s dasNov3.JH570393               1791320 2 -   2296528 -CC
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130413912 0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6438299 3167 -   6597006 I
e canFam3.chr2                  79160103 20 -  85426708 I
e manLeu1.NW_012105442v1         1529165 9647 -   1547936 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=-829.000000
s hg38.chr14_GL000009v2_random     51767 1 +    201709 -A
s otoGar3.GL873538              19689770 1 -  27850971 -A
i otoGar3.GL873538             I 1 I 151
s dasNov3.JH570393               1791322 1 -   2296528 T-
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130413912 0 - 210400635 C
e rheMac8.chr15                   542626 0 - 111343173 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6438299 3167 -   6597006 I
e canFam3.chr2                  79160103 20 -  85426708 I
e colAng1.NW_012121088v1           46928 0 +    168452 C
e cebCap1.NW_016107851v1         1085712 378 +   1314817 I
e saiBol1.JH378105              64673143 0 -  72162052 C
e manLeu1.NW_012105442v1         1529165 9647 -   1547936 I
e chlSab2.chr2                  66478567 0 +  90373283 C
e cerAty1.NW_012002921v1          429064 0 -    438202 C
e macNem1.NW_012012823v1          390214 0 +    434444 C
e macFas5.chr13                111134561 0 - 111193037 C
e nomLeu3.chr1a                 40848859 0 + 122973662 C
e panPan2.chr13                 96081024 0 - 114479721 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I
e gorGor5.CYUI01002030v1           17595 0 +     53730 C
e panTro5.chr9                  41731326 0 + 116767853 C

a score=-30181.000000
s hg38.chr14_GL000009v2_random     51768  3 +    201709 t-------------------tt
s panTro5.chr9                  41731326  3 + 116767853 C-------------------tt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081024  3 - 114479721 A-------------------tt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           17595  3 +     53730 C-------------------tt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40848859  3 + 122973662 A-------------------tt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542626  8 - 111343173 G--------------ttttttt
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111134561 22 - 111193037 CGCCTTttttttttcttttctt
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390214  7 +    434444 C---------------TCTCTC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429064 16 -    438202 T------Ctttttttttttttt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66478567 12 +  90373283 C----------TCttttttttt
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           46928 17 +    168452 C-----ATCCttttttttcttt
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64673143 13 -  72162052 ---------Ctgcttgtttctt
i saiBol1.JH378105             C 0 C 0
s otoGar3.GL873538              19689922  3 -  27850971 -------------------ttt
i otoGar3.GL873538             I 151 C 0
s dasNov3.JH570393               1791323  3 -   2296528 -------------------TTT
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130413912  0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6438299 3167 -   6597006 I
e canFam3.chr2                  79160103 20 -  85426708 I
e cebCap1.NW_016107851v1         1085712 378 +   1314817 I
e manLeu1.NW_012105442v1         1529165 9647 -   1547936 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=317816.000000
s hg38.chr14_GL000009v2_random     51771 71 +    201709 ttttttctttttttttgaggcagtgtctcactca-gtcacc--caggctggagtgtcttggtgccatctccact
s panTro5.chr9                  41731329 71 + 116767853 ttttttctttttttttgaggcagtgtctcactct-gtcgcc--caggctggggtgtcttggtgccatctccact
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081027 71 - 114479721 tttttttcttttttttgatgcagtgtctcactct-gtcgcc--caggctggagtgtcttggtgccatctccact
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           17598 69 +     53730 ttttttc-ttttttttgaggcagtgt-tcactct-gtcacc--caggctggagagtcgtggtgccatctccact
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40848862 69 + 122973662 tttttt--ttttttttaaggcagtgtctcactct-gtcacc--caggctggagtgtcatggtaccatctcagct
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542634 71 - 111343173 cttttcttttctttttgagatggagtcttgctct-gttgcc--taggctagagtgcagtggcgcgatctcagct
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111134583 71 - 111193037 ttcttttcttttttttaatacagtgtctcactct-gttgtc--caggctggagggtcgtggcaccatctcggct
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390221 70 +    434444 tttttttttttttttggaggcagtgtctcactct-gtcacc--caggctggagtgt-gtggcaccatcttggct
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429080 71 -    438202 tttttttttttttttgaggccagtgtctcactctggtcaccatcaggctggagtgt-gtggcgccatcttgg--
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66478579 70 +  90373283 ttttttttttttttttgaggcagtgtctcactct-gtcacc--caggctggagtgt-atggtgccatcttggct
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           46945 71 +    168452 tcttttcttttttttgaatacagtgtctcactct-cttgtc--caggctggagtgtcgtggcaccatcttcgct
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130413912 47 - 210400635 -----------------------agcctcactct-gtcac---caggctggagtgcaatggtgcagtctcagct
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64673156 72 -  72162052 tgtttgtttgtttgttgagatgaaatttcactct-tggactg-caggctggagtgtagtggcatgatctcagct
i saiBol1.JH378105             C 0 C 0
s otoGar3.GL873538              19689925 71 -  27850971 ttttttttttttttttgagacagggtcttattct-gtcacc--caggctaaagtgcagttgtgctatcatagct
i otoGar3.GL873538             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6438299 3167 -   6597006 I
e canFam3.chr2                  79160103 20 -  85426708 I
e dasNov3.JH570393               1791326  0 -   2296528 C
e cebCap1.NW_016107851v1         1085712 378 +   1314817 I
e manLeu1.NW_012105442v1         1529165 9647 -   1547936 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=602151.000000
s hg38.chr14_GL000009v2_random     51842 81 +    201709 cactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgag-actaaaagcacccaccat
s panTro5.chr9                  41731400 81 + 116767853 cactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgag-actacaagcacccaccat
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081098 81 - 114479721 cactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgag-actacaagcacccaccat
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           17667 79 +     53730 cactgcaacctccacctcc--ggttcaagtgattctcctgcctcagcctcccaagtagctgag-actacaagcacccaccat
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40848931 81 + 122973662 cactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgag-actacaggcacccaccat
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542705 81 - 111343173 cattgcaacctctgcctgccaggttcaagtgattctcctgcctcagcctcccaagtagctggg-actacaggtgcctgccac
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111134654 81 - 111193037 cactgcaacctccacctcccaggttcaaacgattttcctgcctcagcctcctaagtagctgag-actacaggcgcccaccat
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390291 81 +    434444 cactgcaacctccacctcccaggttcaagcaattctcccacctcagcctcccgcatagctgag-actacaggcgcctgccgt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429151 81 -    438202 cactgcaacctccacctcccaggttcaagcaattctcccacctcag-ctcccgcatagctgagaactataggcacctgccat
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66478649 81 +  90373283 cactgcaacctccacctcccgggttcaagcaattctcccgcctcagcctcccacgtagctgag-actacaggcgcccgccat
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1538812 81 -   1547936 cactacaacctccacctcccaggttcaagcaattctcccacctcagcctcccgcatagctgag-actataggcacctgccat
i manLeu1.NW_012105442v1       I 9647 C 0
s colAng1.NW_012121088v1           47016 81 +    168452 cactgcaacctccacctcccaggttcaagcgattttcctgcctcagcctcccaagtagctgag-actacaggcgcccaccat
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130413959 81 - 210400635 ctctgcaatccctgcctcctgggttcaagtgattctcctgtctcagtctccagagtagctgag-actacaggtgcctgccac
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64673228 81 -  72162052 cactgcaacctctgcctcccagattcaagcaatcctcctgcctcagcctctcgagtagctggg-attacaggtatgcactac
i saiBol1.JH378105             C 0 C 0
s otoGar3.GL873538              19689996 76 -  27850971 tactgcaacctcaaactccca-----aaggaatcttcctccctcagcctcctgagtagctggg-actataggtgaacatcat
i otoGar3.GL873538             C 0 I 4879
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6438299 3167 -   6597006 I
e canFam3.chr2                  79160103 20 -  85426708 I
e dasNov3.JH570393               1791326  0 -   2296528 C
e cebCap1.NW_016107851v1         1085712 378 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1041541.000000
s hg38.chr14_GL000009v2_random     51923 164 +    201709 tacacccagctaatgtttgcatttttagtagagacagggtttcaccatattggccaggctcttcttg-aa---ctcctgacctt--gtgatctgcctgcctgagcctctcaaagtgctgg-gattacaggcat--gagccaccgcacccagccCATGCCACTTTTAAAGTTTC
s panTro5.chr9                  41731481 164 + 116767853 tacacccagctaatgtttgtatttttagtagagacagggtttcaccatattggccaggctcttcttg-aa---ctcctgacctt--gtgatctgcctgcctcagcctctcaaagtgttgg-tattacaggcat--gagccaccgcacccggccCATGTCACTTTTAAAGTTTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081179 164 - 114479721 tacacccagctaatgtttgtatttttagtagagacaggatttcaccatattggccaggctcttcttg-aa---ctcctgacctt--gtgatctgcctgcctcagcctctcaaagtgttgg-tattacaggcat--gagccaccgcacccagccCATGTCACTTTTAAAGTTTC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           17746 165 +     53730 tacacccagctaatgtttgtatttttagtagagacagggtttcaccatattggccaggctcttcttgaaa---ctcctgacctt--gtgatctgcatgcctcagcctctcaaagtgctgg-gattacaggcat--gagccaccgcacccggccCATGTCACTTTTAAAGTTTC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40849012 164 + 122973662 tacacccagctaatgtttgtatttttagtacagacagggtttcaccacattggccgggctgttctcg-aa---ctcctgacctt--gtgatctgcctgcctcagcctcacaaagtgctgg-gattacaggcat--gagccaccgtgcccagcTCACGTCACTTTTAAAGTTTC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542786 166 - 111343173 aacacctggctaatttttgtatttttagtagagatgggatttcaccatattggtcaggctgatctca-aactcctcctgacctt--gtgatccaactgcctcagcttcccaaagtgctgg-gattacagg-gt--gagcctccgtacccagccTATACCACTTTTAAAGTTTC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111134735 164 - 111193037 tacacccagctaatgtttgtatttttagtagagaaagggtttcaccctattggccaggctgttctca-aa---ctcctgacctt--gtcatctacctgcctcagcctcccaaaatgctgg-gattacaggcat--gagctactgcgcccagccCATGTCACTTTTAAAGTTTG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390372 164 +    434444 tacacccagctaatgtttgtatttttagtagagacagggtttcaccgtcttgagcagactgttctca-aa---ctcctgacctt--gtgatctgcctgcctcagcctcccacagtgctgg-gattacaggtat--gagccaccgtgcctggcTCATGTAACTTTTAAAGTTTC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429232 165 -    438202 tacacccagctaatgttt-tattttagtaagagacagggtttcaccatcttgagcagctgtttctca-aa---ctcctgacctt--atgatcc-cctgcctcagcctcccacagtgctggagattacaggtatcgaagccaccgtgcctggcTCATGTCACTTTTAAAGTTTC
i cerAty1.NW_012002921v1       C 0 I 1
s chlSab2.chr2                  66478730 164 +  90373283 tacacccagctaatgtttgtatttttagtagagacagggtttcaccatcttgagcaggctgttctca-aa---cttctgacctt--gtgatctgcctgcctcagcctcccacagtgctgg-gattacaggcat--gagctaccatgcctggcTCATGTCACTTTTAAAGTTTC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1538893 164 -   1547936 tacacccagctaatgtttgtatttttagtagagacagggtttcaccatcttgagcaggctgttctca-aa---ctcctgacctt--atgatctgcctgcctcagcctcccacagtgctgg-gattacaggtat--gagccaccgtgcctggcTCATGTCACTTTTAAAGTTTC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           47097 164 +    168452 tacactcagctaatgtttgtgttttcagtagagaaagggtttcaccctcttggccaggctgttcttg-aa---ctcctgacctt--gtcatctacctgcctcagtgtcccaaaatgctgg-gattacaggcat--gagctactgtgccgagccCATGTCACTTTTAAAGTTTG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130414040 164 - 210400635 catgcctggctaatttttgtatttttagtagagatggggttttaccatattggccaggctggtctcg-ag---ctcctgacctt--gtgatctgcctgccttggcatcccaaagtgctga-gattacagccgt--gagccactgtccctggcTCATACTACTTTTAAAGTTTC
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64673309 162 -  72162052 catgcctggctag-ttttgtatttttagtagagacagggtttatccatgttggacaggtgggtctca-aa---ctccccacctcaggtgatccgcccacctcagcctcccatagtgctgg-gattacaggcac--gagccaccatgcccagc---cATCACTTTGAAAATTTC
i saiBol1.JH378105             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6438299 3167 -   6597006 I
e canFam3.chr2                  79160103  20 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791326   0 -   2296528 C
e cebCap1.NW_016107851v1         1085712 378 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1190179.000000
s hg38.chr14_GL000009v2_random     52087 312 +    201709 TTTGCACCAgccaggtgtggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggtgtatcacgaggtcaggagttcaagaccagcctggccaagatggtgaaaccccaactctactaaaagtac---aaaaaaatatattagcctggtgtggtggtggg-cacctgtaatcccagctactaggaaggctgaggcagagaattgcttgaacctgggagacggaggttgcag-cagctgagattgcaccactgcactccagcctggg-tga-cagggcaagactc-catcttgaaaataaaaaaaaattaaa
s panTro5.chr9                  41731645 315 + 116767853 TTTGCACTggccaggtgctgtggctcatgcctgtaatcccagcactttgggaggctgaggcagatgtatcacgaggtcaggagttcaagatcagcctggccaagatggtgaaactccatctctactaaaagtacaaaaaaaaaaaaaattagtctggtgtggtggtggg-cacctgtaatcccagctactaggaaggctgaggcagagaattgtttgaatctggaagatggaggttgcag-gagctgagattgcaccactgcactccagcctggg-tga-cagggcaagattc-cgtcttgaaaataaaaaattttaaaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081343 312 - 114479721 TTTGCACTggccaggtgctgtggctcatgcctgtaatcccagcactttgggaggctgaggcagatgtatcacgaggtcaggagttcaagatcagcctggccaagatggtgaaactccatctctactaaaagtac--aaaaaaaaaaaattagtctggtgtggtggtggg-cacctgtaatcccagctactaggaaggctgaggcagagaattgcttgaacctgggagacagaggttgcag-gagctgagatcgcaccactgcactccagcctggg-taa-cagggcaagactc-cgtcttgaaaataaaaaa-tttaaaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           17911 305 +     53730 TTTGCACCAGCCAGgtg--gtggctcatg-ctgtaatcccagcactttgggaggccgaggcaggtatgtcacgaggtcagaagttcaagaccagcctggccaagatgctgaaac-ccgtctctactaaaagtaa---aaaaaaaaaaaaaagcc-ggtgtggtggcggg-cacctgtaatcccagctactaggaaggctgaggcagagaattgcttgaacctgggagacagaggttgcag-gagctgagatcg-gccactgcactccagcctggg-taa-caggggcagactc-cgtctttaaaataaaaaa-ttaaaaa
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40849176 312 + 122973662 TTTGCACTggccaggcatggtggctcatgcctatattcccagaactttgggaggccaaggcaggtgtgtcacaaggtcaggagttcaagaccatcctggccaagatagtgaaactccacctctactaaaagtgc----aaaaagaaaattagtgaagtgaggtggtggg-cacctgtaatctcagctactagggaggctgaggcagagaattgcttgaactagagaggtggaggttgcagtgagccgagatcacagcactgcactccagcctgag-tga-cagggcaagactc-cattttgaaaataaaaaaTTTTTTAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111134899 307 - 111193037 TTTGCAGCAGACA-Ccacggtgactcatgcctgtaatcccagcacttttggaggctgaggcaggtgtgtcacaaggtcaggagttcaagaccagcctggccaagatggtgaaaccccatctctatt-aaagtac-----aaaaaaatattagccgggtg-gggagtggg-cacctgtattcccagctactagggagtctgaggcagagacttgcttaaacctgggaggcagaggttgcagtgagtcgagatcacaccactgctctccagcctggg-tga-cagggcaagactc-catcttgaaaat-aaaaaCTTTTAAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390536 308 +    434444 TTTGCACCggccaggcacggtggctcatgcctgtaatcccagcactttgggaggtcgaggcaggtgtgtcatgaggtcaggagttc-agaccagcctggccaagacggtgaaactccatctctactaaaagtac-----aaaaaaa-attagctgggtgttgtggtggg-cacctgtaatcccagctactagggaggctgaggcagagaaatgcttgaacccgggaggtggaggttgcagtgagccgagatcacaccactgcactccagcctagg-tga-aagagcgagactc-catcttgaaaat-aaaaaCTTTTAAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429398 308 -    438202 TTGGCACCggccaggcacggtggctcatgcctgtaatcccagcactttgggaggccga-gcaggtgtgtcatgaggtcaggagttc-agaccagcctggccaagacggtgaactcccatctctactaaaagtac-----aaaaaaa-gtttactgggtgttgtggtgggccacctgtaatcccagctactagggaggctgaggcagagaaatgctt-aacccgtga-gtggaggttgcagtgagccgagatcaca-cactgcactccagcctgggctgaccagagcgagactc-catcttgaaaataaaaaaaaTTTTAA
i cerAty1.NW_012002921v1       I 1 C 0
s chlSab2.chr2                  66478894 311 +  90373283 TTTGCACCggccaggcacggtggctcatgcttgtaatcccagcactttgggaggccgaggcaggtgtgtcatgaggtcaggagttc-agaccagcctggccaagatggtgaaactccgtctctactaaaagtac-----aaaaaaaaattagctgggtgtggtggtggg-cacctgtaatcccagctacgaggaaggctgaggcagagaaatgcttgaactggagaggtggaggttgcagtgagccgagatcacaccactgcactccagcctggg-tga-cagagcgagactcttatcttgaaaataaaaaaaTTTTTAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1539057 310 -   1547936 TTTGCACCggccaggcacggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggtgtgtcatgaggtcaggagttc-agaccagcctggccaagacggtgaaactccatctctactaaaagtac-----aaaaaaaaattagctgggtgttgtggtggg-cacctgtaatcccagctactagggaggctgaggcagagaaatgcttgaacccgtgaggtggaggttgcagtgagccgagatcacaccactgcactccagcctggg-tga-cagggcaagactc-catcttgaaaataaaaaaaaTTTTAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           47261 309 +    168452 TTTGCAGCAGACA-Ccacggtgactcatgcctgtaatcccagcacttttggaggctgaggcaggggtgtcacgaggtcagaagttcaagaccagcctggccaagatggtgaaaccccgtctctactaaatgtac-----aaaaaaa-attagccgggtg-gggggtggg-cacctgtaatcccagctactagggagtctgaggcagagaattgcttaaacccaggaggcagaggttgcagtgagtcgagatcacaccactgcactctagcctggg-tga-cagggcaagactcccatcttgaaaataaaaaTGTTTAAAA
i colAng1.NW_012121088v1       C 0 C 0
e calJac3.chr1                 130414204   0 - 210400635 C
e rheMac8.chr15                   542952   0 - 111343173 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6438299 3167 -   6597006 I
e canFam3.chr2                  79160103  20 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791326   0 -   2296528 C
e cebCap1.NW_016107851v1         1085712 378 +   1314817 I
e saiBol1.JH378105              64673471   0 -  72162052 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=39260.000000
s hg38.chr14_GL000009v2_random     52399 8 +    201709 aaaGTTTA
s panTro5.chr9                  41731960 8 + 116767853 aaaGTTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081655 8 - 114479721 aaaGTTTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           18216 8 +     53730 aaaGTTTA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40849488 8 + 122973662 AAAGTTTA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111135206 8 - 111193037 AAAGTTTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390844 8 +    434444 AAAGTTTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429706 8 -    438202 AAAGCTTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66479205 8 +  90373283 AAAGTTTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1539367 8 -   1547936 AAAGCTTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           47570 8 +    168452 AAAGTTTG
i colAng1.NW_012121088v1       C 0 C 0
s dasNov3.JH570393               1791326 7 -   2296528 AAAGTTT-
i dasNov3.JH570393             C 0 C 0
e calJac3.chr1                 130414204 0 - 210400635 C
e rheMac8.chr15                   542952 0 - 111343173 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6438299 3167 -   6597006 I
e canFam3.chr2                  79160103 20 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e cebCap1.NW_016107851v1         1085712 378 +   1314817 I
e saiBol1.JH378105              64673471 0 -  72162052 C
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=150179.000000
s hg38.chr14_GL000009v2_random     52407 18 +    201709 TTTGCACCATCTCAATTC
s panTro5.chr9                  41731968 18 + 116767853 TTTGCACAATCTCAATTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081663 18 - 114479721 TTTGCACAATCTCAATTC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           18224 18 +     53730 TTTGCACCATCTCAACTC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40849496 18 + 122973662 TTTGCACCATCTCAACTC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542952 18 - 111343173 TTTGCACCATCTTAACTC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111135214 18 - 111193037 TTTGCACCATCTCAACTC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390852 18 +    434444 TTTGCACCATCTCAACTC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429714 18 -    438202 TTTGCACCATCTCAACTC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66479213 18 +  90373283 TTTGCACCATCTCAACTC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1539375 18 -   1547936 TTTGCACCATCTCAACTC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           47578 18 +    168452 TTTGCACCATCTCAACTC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130414204 18 - 210400635 ATTGCACCATTTCAACTC
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64673471 17 -  72162052 TTTGCACCGTCTCAAGT-
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6441466 17 -   6597006 TTTGCACCGTCTCAAAT-
i aotNan1.NW_018488791v1       I 3167 C 0
s dasNov3.JH570393               1791333 18 -   2296528 TTTACAGTACCCCAAGTC
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79160103 20 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e cebCap1.NW_016107851v1         1085712 378 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=285823.000000
s hg38.chr14_GL000009v2_random     52425 30 +    201709 TTCCCACCCATAATCACAACTGAATGATTA
s panTro5.chr9                  41731986 30 + 116767853 TTCCCACCCATAATCACAACTGAATGATTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081681 30 - 114479721 TTCCCACCCATAATCACAACTGAATGATTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           18242 30 +     53730 TTCCCACCCATAATTACAACTGAATGATTG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40849514 30 + 122973662 TTCCCACCCATAATCACAACTGAATGATTG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   542970 30 - 111343173 TTCCCACTCATAATCACAAGTGAATGACTG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111135232 30 - 111193037 TTCCCACCCATAATCACAACTGAATGATTG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390870 30 +    434444 TTCCCACCCATAATCACAACTGAATTATTG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429732 30 -    438202 TTCCCACCCATAATCACAACTGAATTATTG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66479231 30 +  90373283 TTCCCACCCATAATGACAACTGAATGATTG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1539393 30 -   1547936 TTCCCACCCATAATCACAACTGAATTATTG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           47596 30 +    168452 TTCCCACCCATAATCACAACTGAATGATTG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130414222 30 - 210400635 TTCCCACCCATAATCACAAGTGAATGATTG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64673488 30 -  72162052 TTTCCATCCATAATCACAAGAGAGTGGTGG
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6441483 30 -   6597006 TTTCCATCCATAATCACAAGTGAGTGGTGG
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79160123 29 -  85426708 TTTCCACCCCTGTACATAG-TGAATGATTA
i canFam3.chr2                 I 20 C 0
s dasNov3.JH570393               1791351 29 -   2296528 -TTCTACCCCTAAGCACAAGTGAATGCTTG
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e cebCap1.NW_016107851v1         1085712 378 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=576631.000000
s hg38.chr14_GL000009v2_random     52455 56 +    201709 GCATCCAAACAC--TTTG--CCACATATGGATGTTTATTATTTAGTAGAATCCAAAATAA
s panTro5.chr9                  41732016 56 + 116767853 GCATCCAAACAC--TTTA--CCACATATGGATGTTTATTATTTAGTAGAATGCAAAATAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081711 56 - 114479721 GCATCCAAACAC--TTTA--CCACATATGGATGTTTATTATTTAGTAGAATGCAAAATAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           18272 55 +     53730 GCATCCAAACAC--TTTA--CCACATAT-GATGTTTATTATTTAGTAGAATTCAAAATAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40849544 58 + 122973662 GCATCCAAACAC--TTTACCCCACATATGGATGTTTGTTATATAGTAGAATCCAAAATAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   543000 56 - 111343173 GCAACCAAACAC--TTAA--CCACATACAGACATTTATTATTTAATAGAATCCAAAATAA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111135262 56 - 111193037 GCATCCAAACAC--TTTA--CCACATATGGATGTTTATTATTTAGTAGAATCCAATTTAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390900 58 +    434444 GCATCCAAACAC--TTTACCCCACATATGGATGTTTATTATATAGTAGAATTCAAAATAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429762 58 -    438202 GCATCCAAACAC--TTTACCCCACATATGGATGTTTATTATACAGTAGAATTCAAAATAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66479261 58 +  90373283 GCATCCAAACAC--TTTACCCCACATATGGATGTTTATTATATAGTAGAATTCAAAATAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1539423 58 -   1547936 GCATCCAAACAC--TTTACCCCACATATGGATGTTTATTATACAGTAGAATTCAAAATAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           47626 56 +    168452 GCATCCAAACAC--TTTA--CCACATATGGATGTTTATTATTTAGTAGAATCCAATTTAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130414252 58 - 210400635 GCATTGAAACACTTTTAA--CCACAAAAGAATGTTTACTATTTAATAGAATCCAAAATAA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64673518 56 -  72162052 GCATCAAAACAC--TTAA--CCACATATGGATGTTTATTATTTAATGGAATCCAAAATAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1086090 56 +   1314817 GCATCAAAACAC--TTAA--CCACATATGGATGTTTATTATTTAATGGAATCCAAAATAA
i cebCap1.NW_016107851v1       I 378 I 4228
s aotNan1.NW_018488791v1         6441513 56 -   6597006 GCATCCAAACAC--TTAA--CCACATATGGATGTTTATTATTTAATAGAATCCAAAATAA
i aotNan1.NW_018488791v1       C 0 I 4220
s canFam3.chr2                  79160152 56 -  85426708 GAATCCAAATGC--TTAA--CCATGTAGGGATGTTTATTATTTTAACAATTCCATGGTAA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1791380 56 -   2296528 GCATCCAAGTGT--TTAA--CTACATGTGGGTGTTTATTGTTTAAAGGAATCCGAGATAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=468160.000000
s hg38.chr14_GL000009v2_random     52511 67 +    201709 TTGCATTTT---ATGAAT----TAAACA--A------AACACTAA-AATG-TTCATTTCCCTTTTTATGTTAAAAGCTTTG--------------------TGG
s panTro5.chr9                  41732072 67 + 116767853 TTGCATTTT---ATGAAT----TAAACA--A------AACACTAA-AATG-TTCAGTTCCATTTTTATGTTAAAAGCTTTG--------------------TGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081767 67 - 114479721 TTGCATTTT---ATGAAT----TAAACA--A------AACACTAA-AATG-TTCAGTTCCATTTTTATGTTAAAAGCTTTG--------------------TGC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           18327 66 +     53730 TTGCATTTT---ATGAAT----TAAAC---A------AACACTAA-AATG-TTCATTTCCATTTTTATGTTAAAAGCTTTG--------------------TGC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40849602 67 + 122973662 TTGCATTTT---ATAAAT----TACACA--A------AACACTAA-AATG-TTCATTCCCATTTTTATGTTAAAAGCTTTG--------------------TGC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   543056 88 - 111343173 ATGCATTTT---ATGAATTAAATAAACA--G------AACACTAA-AAGG-TTCATTTCCATTTTTCTGTTAAAAGCTTTGNNNNNNNNNNNNNNNNNNNN---
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111135318 67 - 111193037 TTGCATTTT---ATGAAT----TAAACA--A------AACCCTAA-AATG-TTAATTTCCTTTTTTATGTTAAAAGCTTTG--------------------TGC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          390958 67 +    434444 TTGCATTTT---ATAAAT----TACACA--A------AACACTAA-AATG-TTCATTTCCATTTTTATGTTAAAAGCTTTG--------------------TGC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429820 67 -    438202 TTGCATTTT---ATAAAT----TACACA--A------AACACTAA-AATG-TTCATTTCCATTTTTATGTTAAAAGCTTTG--------------------TGC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66479319 67 +  90373283 TTGCATTTT---ATAAGT----TACACA--A------AATACTAA-AATA-TTCATTTCCATTTTTATGTTAAAAGCTTTG--------------------TGC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1539481 67 -   1547936 TTGCATTTT---ATAAAT----TACACA--A------AACACTAA-AATG-TTCATTTCCATTTTTATGTTAAAAGCTTTG--------------------TGC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           47682 67 +    168452 TTGCATTTT---ATGAAT----TAAACA--A------AACCCTAA-AATG-TTAATTTCATTTTTTATGTTAAAAGCTTTG--------------------TGC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130414310 62 - 210400635 TTGCATTTT--------A----TAAATA--A------AACACTAA-AAGG-GTCATTTCCATTTTTATGTTAAAAGCTTTG--------------------TGC
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64673574 72 -  72162052 ATACTTTTTTGAATTAAA----TAAACATCA------AACACTAA-ACGA-TTTATTTTCATTGTTATGTTAAAAGCTTTG--------------------TGC
i saiBol1.JH378105             C 0 C 0
s canFam3.chr2                  79160208 74 -  85426708 GTCCTTTTT---ATGAAT----TAAATA--AACTTGTAACACTAA-AAAGATTGATTTTTCTTTTTATGTTATATGTTTTG--------------------ggg
i canFam3.chr2                 C 0 I 5271
s dasNov3.JH570393               1791436 72 -   2296528 ATCCTTTTT---GTGAAT----TAAATA--AACTTGTAATACTAAGAATA-TTAATTGCTGTTTTTAAGTTAAAA--TTTG--------------------TCA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6441569 4220 -   6597006 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e cebCap1.NW_016107851v1         1086146 4228 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=16562.000000
s hg38.chr14_GL000009v2_random     52578 2 +    201709 TT
s panTro5.chr9                  41732139 2 + 116767853 TT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081834 2 - 114479721 TT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           18393 2 +     53730 TT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40849669 2 + 122973662 TT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111135385 2 - 111193037 tt
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          391025 2 +    434444 TT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429887 2 -    438202 TT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66479386 2 +  90373283 TT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1539548 2 -   1547936 TT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           47749 2 +    168452 TT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130414372 2 - 210400635 TT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64673646 2 -  72162052 TT
i saiBol1.JH378105             C 0 I 3572
s dasNov3.JH570393               1791508 2 -   2296528 TT
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   543144 0 - 111343173 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6441569 4220 -   6597006 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e cebCap1.NW_016107851v1         1086146 4228 +   1314817 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=99891.000000
s hg38.chr14_GL000009v2_random     52580 24 +    201709 ggccaggcatggtggttcacactt
s panTro5.chr9                  41732141 24 + 116767853 ggccaggcacggtggctcacactt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96081836 24 - 114479721 ggccagccacggtggctcacactt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           18395 22 +     53730 Cgtcaggcgc-gtggctcaca-tt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40849671 24 + 122973662 ggccaggcgcggtggttcacactt
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111135387 24 - 111193037 ggccaggcgcggtggctcagacct
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          391027 24 +    434444 gaccaggcatggtggctcacactt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          429889 24 -    438202 gaccaggcatggtggctcacactt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66479388 24 +  90373283 ggccaggcgtggtggctcacactt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1539550 24 -   1547936 gaccaggcatggtggctcacactt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           47751 24 +    168452 ggccaggcacagtggctcagactt
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130414374 24 - 210400635 ggccaggtgtgggggctgatgcct
i calJac3.chr1                 C 0 C 0
s dasNov3.JH570393               1791510 24 -   2296528 TTTTTTACATGAGAGTACATCCTT
i dasNov3.JH570393             C 0 I 6079
e rheMac8.chr15                   543144  0 - 111343173 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6441569 4220 -   6597006 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e cebCap1.NW_016107851v1         1086146 4228 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=1748328.000000
s hg38.chr14_GL000009v2_random     52604 326 +    201709 gtaatcccaaaattt-----------------------------------------ggggaggccgaggcaggtgaatcacctgacgtcaggagtttgagaccagcctggccaaaatgatgaaa-cc-tgtctctagtaaaaatacaaaaattagcaaggcgtgttggcaggcatgtgtaatctcagatactcaggaggctgaggcaggagaatcacttgaacccaggagacagaggttgcagtaagcca---agatcataccactgcactatagccttggtgat----ggagactctgtctcaaa-acaaaacaaaa----------aaaaa------GGTTTGTGCTTTC----CTTACATAAGAGTACATCTTCTGactataaaaatcctggaa
s panTro5.chr9                  41732165 336 + 116767853 gtaatcccaaaattt-----------------------------------------ggggaggccgaggcaggtgaatcacctgaggtcaggagcttgagaacagcctggccaacatgatgaaa-cc-tatctccaataaacatacaaaagttagcaaggcgtgttggcaggcatgtgtaatctcaaatactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtaagcca---agatcataccactgcactatagcctgggtgat----ggagactccatctcaaa-aaaaaataaaaataaaaaaataaaaa------GGTTTGTGCTTTT----CTTACATAAGAGTACATCTTCTGactataaaaatcctggaa
i panTro5.chr9                 C 0 I 1
s panPan2.chr13                 96081860 320 - 114479721 gtaatcccaaaattt-----------------------------------------ggggaggccgaggcagatgaatcacctgaggtcaggagcttgagaacagcctggccaacatgatgaaa-cc-tgtctctagtaaacatacaaaagttagcaaggcgtgttggcaggcatgtgtaatctcagatactcaggaggctgaggcaggagaatcacttgaacccaggagacagaagttgcagtaagcca---agaacataccactgcactatagcctgggtgat----ggagactccatctcaaa-aaaat----------------aaaaa------TATTTGTGCTTTT----CTTACATAAGAGTACATcttctgactataaaaatcctggaa
i panPan2.chr13                C 0 I 1
s gorGor5.CYUI01002030v1           18417 328 +     53730 gtaatcccaaaattt-----------------------------------------ggtgaggccgaggctggtgaatcacctgaggtcaggagtttgagaccagcctggtcaacatgatgaaa-cc-tgtctctagtaaaaatacaaaaattagcaaggcatgttggcaggcatgtgtaatctcagatactcgggaggctgaggc-ggagaatcacttgaacccaggagacagaggttgcagtaagcca---agatcataccactgcactatagcct-ggtgat----ggagactccgtctcaaa-aaaaaaaaaaaaaaa------aaaaa------GGCTTGTGCTATT----CTTACATAAGAGTACATCTTCTGactataaaaatcctggaa
i gorGor5.CYUI01002030v1       C 0 I 1
s nomLeu3.chr1a                 40849695 328 + 122973662 gtaatcccaacattt-----------------------------------------tgggatgccgaggcgggcgaatcacccgaggtgaggagtttgagaccagcctggccaacatgatgaaa-cc-cgtctctactaaaagtacaaaaattagcaaggcatgttggcaggcatgtgttatctcagatgctca-gaggctgaggcaggagagtcacttgaacccaggagacagaggttgcagtgagcca---agatcataccactgcactatagcctaggtgat----ggagattccatttcaaa-aaaaaaaaaaaaaa-------aaaaa------GGTTTGTGCTTCT----CTTTCATAAGAGTACATcctctgactataaaaatcctggaa
i nomLeu3.chr1a                C 0 I 1
s rheMac8.chr15                   543144 283 - 111343173 ----------------------------------------------------------------------------------tgaggtcaggagtttaagaccagcctggccaacatgatgaaaccc-cgtctcta-taaaaatacaaaaattagccaggcgtggtggcaagcacttgtaatcccagctactcaggacgctgagacagaagaattacttgaacccatgaggcagaggttgcagtgagcca---agatcatgccactgcactacagcctgggtgacagagggagactccatctcaaa-aaaa-----------------aaaaaa-----GACTTTGACTTTT----CTTACCTAAGAGTACATcctctgactagaaaaatcctggaa
i rheMac8.chr15                C 0 I 1
s macFas5.chr13                111135411 364 - 111193037 gtagtcccaaggcctagaagtttgggacgctgagacaggtgggacgctgagacaggtgggacgctgagacaggtggaacacctgaggtcaggtgattgagaccagcctggccaacatgatgaaa-cc-cgtctctactaaaaatacaaaaattagcaaggcatgttggcaggcatgtgtaatctcagatactcgggagactgagggaggagaatcacttgaacccaggagacagaggttgcagtaagcca---agatcataccactgcactatagcctgggtgat----ggagact--atctcaaa-aaaa-----------------aaaaaaaaaTCGGTTTGTGCCTTT----CTTACATAAGAgtacgtcctctgactataaaaatcctggaa
i macFas5.chr13                C 0 I 1
s macNem1.NW_012012823v1          391051 315 +    434444 gtaatcccaacattt-----------------------------------------tgggaggccgaggcaggcagatcacttgaggtcaggagtttgagatcagcctggccaacatcatgaag-cc-tgtctctactaaaaatacaaaaactagcaaggtgtattggcaagcatgtgtaatctcagatattcgggaagctgaggcaggagaatcacttgaacccaggagacagaggttgcagtaagcca---agatcataccactgcactatagcctgggtgat----ggagactccatctcaaa-aaca-----------------aaaaa------GTTTTGTGCTTTT----Ct----taagagtacgttctctgactataaaaatcctggaa
i macNem1.NW_012012823v1       C 0 I 1
s cerAty1.NW_012002921v1          429913 315 -    438202 gtaatcccaacattt-----------------------------------------tgggaggccgaggcaggcagatcacttgaggtcaggagtttgagatcagcctggccaacatcatgaag-cc-tgtctctactaaaaatacaaaaactagcaaggtgtattggcaagcatgtgtaatctcagatattcgggaagctgaggcaggagaatcacttgaacccaggagacagatgttgcagtgagcca---agatcataccactgcactatagcctgggtgat----ggagactccatctcaaa-aaca-----------------aaaaa------GTTTTGTGCTTTT----CT----TAAGAGTACATTctctgactataaaaatcctggaa
i cerAty1.NW_012002921v1       C 0 I 1
s chlSab2.chr2                  66479412 320 +  90373283 gtaatcccaacattt-----------------------------------------tgggaggccgaggcaggcagatcacttgaggtcaggagtttgagaccagcctggccaacatgatgaaa-cc-cgtctctactaaaaatacaaaaactagcaaggcgtattggcaggcatgtgtaatctcagatattcgggaagctgaggcaagagaatcacttgaacccaggagacagaggttgcggtgaacca---agatcataccactacactatagcctgggtgat----ggagactccatctcaaagaaaa-----------------aaaaa------GGTTTGTGCTTTTCTTACt----taagagtatgttctctgactataaaaatcctggaa
i chlSab2.chr2                 C 0 I 1
s manLeu1.NW_012105442v1         1539574 315 -   1547936 gtaatcccaacattt-----------------------------------------tgggaggccgaggcaggcagatcacttgaggtcaggagtttgagatcagcctggccaacatcatgaag-cc-tgtctctactaaaaatacaaaaactagcaaggtgtattggcaagcatgtgtaatctcagatattcgggaagctgaggcaggagaatcacttgaacccaggagacagatgttgcagtgagcca---agatcataccactgcactatagcctgggtgat----ggagactccatctcaaa-aaca-----------------aaaaa------GTTTTGTGCTTTT----Ct----taagagtacgttctctgactataaaaatcctggaa
i manLeu1.NW_012105442v1       C 0 I 1
s colAng1.NW_012121088v1           47775 329 +    168452 gtagtcccaaggcctacaagtt----------------------------------tgggaggctgagacaggtggaacacctgaggtcaggtgattgagaccagcctggccaacatgatgaaa-cc-tgtctctactaaaaatacgaaaattagcaaggcatgttggcaggcatgtgtaatctcagatactcgggagactgaggcaggagaatcacttgaacccaggagacagaggttgcagtaagcca---agatcataccactgcactgtggcctgggtgat----ggagact--atctcaaa-aaaa-----------------aaaaaaaaaa-aGTTTGTGCCTTT----CTTACATATGAGTACATcctctgactataaaaatcctggaa
i colAng1.NW_012121088v1       C 0 I 1
s calJac3.chr1                 130414398 332 - 210400635 ataatcgcagcgttt-----------------------------------------tgggaggctgaggcaggtggatcgcctgaggtcaagaatttgagaccagcctggccaacgtgatgaaa-ccttgcctctactaaaaatacaaaaattagttggccatggtggtaggtacgtgtaatttcagctgcttgagaggctgaggcaggaggattacttgaacccaggaggcagaggttgcagtgagccactgagatcatgccactgcactagagcctgggtgacagagggagtctccatctcaaa-aaaaaaaaa------------aaaaa------GCTTTGTGCTTTT----CTTACATAACAATATCTcctctgactataaaaatcctggaa
i calJac3.chr1                 C 0 I 1
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6441569 4220 -   6597006 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e cebCap1.NW_016107851v1         1086146 4228 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2095329.000000
s hg38.chr14_GL000009v2_random     52930 277 +    201709 aaaacctaggaaatactcttctagatatcatatttgtcaattaatttatggctaagtcctcaaaagcaattgcaagaataacaaaaattgacaagtgtgatctaatttagctaaatagcttctgcacagcatgagaaactatcacggg----attaaacagacagcataaggaatggaagaaaatattcacaaagtatggatatagcaaacg--------cctattatccagaatccataagagacctaaacaaatcaacaagcaaaaaataaataagaccat------taaaaa
s panTro5.chr9                  41732502 285 + 116767853 aaaacctaggaaattctcttctagacatcatatttgtcaattaatttatggctaagtcctcaaaagcaattgcaagaataacaaaaattgacaagtgtgatctaatttagctaaatagcttctgcacagcttgagaaactatcacggg----attaaacagacagcctaaagaatggaagaaaatattcacaaactatggatatagcaaacgcctattatcctattatccagaatccataagagacctaaacaaatcaacaagcaaaaaataaataacaccat------gaaaaa
i panTro5.chr9                 I 1 C 0
s panPan2.chr13                 96082181 285 - 114479721 aaaacctaggaagtactcttctggacatcatatttgtcaattaatttatggctaagtcctcaaaagcaattgcaagaataacaaaaattgacaagtgtgatctaatttagctaaatagcttctgcacagcatgagaaattatcacggg----attaaacggacagcctaaagaatggaagaaaatattcacaaactatggatatagcaaacgcctattatcctattatccagaatccataagagacctaaacaaatcaacaagcaaaaaataaataacaccat------gaaaaa
i panPan2.chr13                I 1 C 0
s gorGor5.CYUI01002030v1           18746 280 +     53730 aaaacctaggaaatactcttctagacatcatatttctc----aacttatggctaagtcctcaaaagcaattgcaagaataacaaaaactgacaattgtgatctaatttagctaaagagcttctgcacagcacgagaaactatcacagg----attaaacagacagcctaaagaatggaagaaaatattcacaaactatgg-tatagcaaatgcctattatcctattatccagaatttataagagacctaaacaaatcaacaagcaaaaaataaatgacaccat------taaaaa
i gorGor5.CYUI01002030v1       I 1 C 0
s nomLeu3.chr1a                 40850024 275 + 122973662 aaaacctaggaaatactcttctggacatcatacttgtcaattaatttatggctaagtcctcaaaagcaattgcaagagtaacaaaaattgacaaatgtgatctaattaggctaaagagcttctgcacggcatgagaaactatcat-gg----atttaacagacagcctaaagaatggaagaaaatattcacaaattatggatacagcaaatg--------cctattatccagagtccataagagacctaaacaaatcaacaagc-aaaaataaataacaccag------taaaaa
i nomLeu3.chr1a                I 1 C 0
s rheMac8.chr15                   543428 281 - 111343173 aaaacttaggaaacactcttctggatattgcacttgtcacttaatttatggctaggtcctcaaaagcaattgcaagaataacaaaaattgacaagtttgatctaattaagctaaagagcttctgcacagcatgagaaactatcaagggattaattaaacagacagcctaaagaatggaagaaaatattcactcacaatgcacacagcaaagg--------cctgttattcagaatccataaggaaactaaacaaatcaactagcaaaaaataaataaccccat------taaaca
i rheMac8.chr15                I 1 C 0
s macFas5.chr13                111135776 276 - 111193037 aaatcctaggaaatgctctcctggatatcatgcttgtcaattaatttatggctaactcctcaaaagcaactgcaagaataac-aaaattgacaagtgtgatctaattaagctaaagggcttctgcacagcgtgaggaactatcactgg----attaaacagatagcctaaataatacaagaaaatattcacaaactatggatacagcaaatg--------cttattatccagaatccataagagacctaaacaaatcaacaagcgaaaaataaataacaccgt------taaagc
i macFas5.chr13                I 1 C 0
s macNem1.NW_012012823v1          391367 276 +    434444 aaaatgtaggaagtactcttctggacatcatacttgtcaattaatttatggctaactcctcaaaagcaactgcaagaataac-aaaattgacaagtgtgatctaattaagctaaagagcttctgcacagcatgagaaactatcacggg----attaaacagacagcctaaagaatggaagaaaatattcacaaactatggatacagcaaacg--------cctgttatccagaatccataagagacctaaacaaatcaacaagcaaaaaataaataacaccag------taaaaa
i macNem1.NW_012012823v1       I 1 C 0
s cerAty1.NW_012002921v1          430229 277 -    438202 aaaatgtgggaagtactcttctggacatcatacttgtcaattaatttatggctaagttctcaaaggcaattgcaagaataacaaaaattgacaagtgtgatctaattaagctaaagagcttctgcacagcatgagaaactatcacggg----attaaacagacagcctaaagaatggaagaaaatattcacaaactatggatacagcaaatg--------cttattatccagaatccataagagacctaaacaaatcaacaagcaaaaaataagtaacaccag------taaaaa
i cerAty1.NW_012002921v1       I 1 C 0
s chlSab2.chr2                  66479733 279 +  90373283 aaaac---ggaaatactcttctggacatcatacttgtcaattaatttatggctaactcctcaaaagcaactgaaagaataac-aaaattgacaagtgggatctaattaagctaaagggcttctgcacagcatgagaaactatcactgg----attaaacagacagcctaaagaatggaagaaaatattcacaaactgtagatacagcaaacg--------cctattatccagagtacataagagacctaaacaaatcaacaagcaaaaaataaataacaccagtaaaaataaaaa
i chlSab2.chr2                 I 1 C 0
s manLeu1.NW_012105442v1         1539890 277 -   1547936 aaaatgtgggaagtactcttctggacatcatacttgtcaattaatttatggctaagttctcaaaggcaattgcaagaataacaaaaattgacaagtgtgatctaattaagctaaagagcttctgcacagcatgagaaactatcacggg----attaaacagacagcctaaagaatggaagaaaatattcacaaactatggatacagcaaatg--------cttattatccagaatccataagagacctaaacaaatcaacaagcaaaaaataagtaacaccag------taaaaa
i manLeu1.NW_012105442v1       I 1 C 0
s colAng1.NW_012121088v1           48105 276 +    168452 aaatcctaggaaaggctctcctggatatcatgcttgtcaattaatttatggctgactcctgaaaagcaacttcaagaataac-aaaattgacaagtgtgatctaattaagctaaagggcttctgcacagcatgagaaactgtcactgg----attaaacagacagcctaaataatggaagaaaatattcacaaactatggatacagcaaatg--------cctatcatccagaatccataagaaacctaaacaaatcaacaagcaaaaaataaataacaccat------taaaac
i colAng1.NW_012121088v1       I 1 C 0
s calJac3.chr1                 130414731 275 - 210400635 aaaacctaggaaatgctatcttggacatcgcacttgtcaattaaattatggctaagtcctcaaaagcaattgcaagaataacaaaaattgacaagtgtgatctaattaagctaaagatcttcttcatagcatgagaaactgtcaaggg----attaaataggcagcctaaagaatggaaggaagtatttacaaac--tgcatatagcaaagg--------cctattttccaggatccataagggacctaaacaaattaagaagcacaaaataaataaccccat------taaaaa
i calJac3.chr1                 I 1 C 0
s cebCap1.NW_016107851v1         1090374 273 +   1314817 aaaacctaggaaatatctttctggatattgggcttgccaatgaatttatggctatgtcctcaaaagcaattgcaagaatagcaaaaattgacaagtgtggcctaattaaactaaggagcttttgcacagaaagagagactgttaaggt----atttaacagacaacctacacagtggaagaaaatattcacaaactatgcttacaacaaaag--------cctgttatgcagaatccttaaaggactt----aaatcaacaagcaaaaaataaataactgcat------taaaaa
i cebCap1.NW_016107851v1       I 4228 I 174
s aotNan1.NW_018488791v1         6445789 277 -   6597006 aaaacctaggaaatatctttctggatattgggtttgccaatgaatttatggctatgtcctcaaaagcaattgtaagaacaacaaaagctgacaagtgtggcccaattaaactgaagagcttttgcacagcaagagagactgtcaagag----atttaacagacaacctacacagtggaagaaaatatttacaaactatgcttacaacaaagg--------cctattatccagaatccataaaggacttaaacaaatcaataagcaaaaaataaataactgcat------taaaaa
i aotNan1.NW_018488791v1       I 4220 I 165
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=851729.000000
s hg38.chr14_GL000009v2_random     53207 155 +    201709 tgggcaaaggacatgaacagacagttctcaaaataacacacataagtggccaacaaaca--ttaaaaaatgcttaccattgctaatcatcagaaaaatgccaaacaaaacatcaattaaataccatttcacatcagtcacaatgacttttgttaaaa
s panTro5.chr9                  41732787 154 + 116767853 tgggcaaaggacatgaacagatacttctcaaaataacacttgt-agtggccaacaaaca--ttaacaaatgcttgccattgctaatcatcataaaaatgacaaacaaaacatcagtgagataccatttcacaccagtcagaatgacttttgttaaaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96082466 154 - 114479721 tgggcaaaggacatgaacagatacttctcaaaataacacttgt-agtggccaacaaaca--ttaacaaatgcttgccattgctaatcatcataaaaatgacaaacaaaacatcagtgagataccatttcacactagtcagaatgacttttgttaaaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19026 155 +     53730 tgggcaaaggacatgaacagacacttctcaaaataacacatgtaagtggccaacaaaca--ttaacaaatgcttaccattgctaatcatcagaaaaatgccaaacaaaacatcagtgagataccatttcacaccagtcagaatgacttttgttaaaa
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40850299 157 + 122973662 tgggcaagggacatgaacagacacttctcaaaataacacatttaagtggcccacaaacatgttaaaaaatgcttaccattgctaatcattagaaaaatgtgagacaaaacatcagtgagataccatttcatacaagtcagaatgacttttgttaaaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   543709 157 - 111343173 tgagcaaatgacatgaacagacacttttcaaaagaacacatagaagtggctaacaaacatgttaacaaatgcttaccgttgctaatcctcagagaaatgccaagcaaaacatcaatgagaaaccatctcacaccagtcagaataacttctgttaaaa
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111136052 157 - 111193037 tgggcaaaggccatgaacagacacttctcaaaataacatatgtaagtggccaacaaacacattaacaaatgcttaccattgataatcatcagagaaatgccaaataaaacatcagtgagataccatttcacaccagtcagaatgacttttgttaaaa
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          391643 140 +    434444 tgggcaaagaacatgaacagacacttctcaaaataacacatgtaagtggctgacaaacatattaacaaatgcttaccattgctaatcatcag-------------aaaacatcagtgagataccatttcacac----cagaatgactttcgtttaaa
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          430506 140 -    438202 tgggcaaagaacatgaacagacacttctcaaaataacacatgtaagtggctgacaaacatattaacaaatgcttaccattgctaatcatcag-------------aaaacatcagtgagataccatttcacac----cagaatgacttttgtttaaa
i cerAty1.NW_012002921v1       C 0 I 14
s chlSab2.chr2                  66480012 153 +  90373283 tgggcaaagaacatgaacagacacttcccaaaataacacatgtaagtggccgacaaacatactaacaaatgcttaccattgctaatcatcagaaaaatgccaaacaaaacatcagtgagataccatttcacac----cagaacgacttttgtttaaa
i chlSab2.chr2                 C 0 I 1
s manLeu1.NW_012105442v1         1540167 140 -   1547936 tgggcaaagaacatgaacagatacttctcaaaataacacatgtaagtggctgacaaacatattaacaaatgcttaccattgctaatcatcag-------------aaaacgtcagtgagataccatttcacac----cagaatgacttttgtttaaa
i manLeu1.NW_012105442v1       C 0 I 13
s colAng1.NW_012121088v1           48381 157 +    168452 tgggcaaaggacgtgaacagacacttcacaaaataacacatgtaagtggccaacaaacacattgacaaatgcttaccattgctaatcatcagagaattgccaaataaaacatcagtgagataccatctcacaccactcagaatgacttttgttaaaa
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415006 153 - 210400635 tgggcgaatgacatgaacaggtgcttttcaaaagaacacatttaagtggtcaacaaacatattaacaaatgcttaccattgccaatcatcagagaaatgccaaacaaaacattagtgagacaccatctcacaccagtcagaatgacttatgtt----
i calJac3.chr1                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6446066 165 -   6597006 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e cebCap1.NW_016107851v1         1090647 174 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=2997.000000
s hg38.chr14_GL000009v2_random     53362 1 +    201709 a
s panTro5.chr9                  41732941 1 + 116767853 a
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96082620 1 - 114479721 a
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19181 1 +     53730 a
i gorGor5.CYUI01002030v1       C 0 I 6
s nomLeu3.chr1a                 40850456 1 + 122973662 a
i nomLeu3.chr1a                C 0 I 3
s rheMac8.chr15                   543866 1 - 111343173 a
i rheMac8.chr15                C 0 I 2
s macFas5.chr13                111136209 1 - 111193037 a
i macFas5.chr13                C 0 I 2
s macNem1.NW_012012823v1          391783 1 +    434444 a
i macNem1.NW_012012823v1       C 0 I 13
s chlSab2.chr2                  66480166 1 +  90373283 g
i chlSab2.chr2                 I 1 I 3
s colAng1.NW_012121088v1           48538 1 +    168452 a
i colAng1.NW_012121088v1       C 0 I 38
e calJac3.chr1                 130415159 0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6446066 165 -   6597006 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e cebCap1.NW_016107851v1         1090647 174 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1540307 13 -   1547936 I
e cerAty1.NW_012002921v1          430646 14 -    438202 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=-16533.000000
s hg38.chr14_GL000009v2_random     53363 12 +    201709 -------caaataataaat
s panTro5.chr9                  41732942  8 + 116767853 --------aaataata---
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96082621  4 - 114479721 --------aaat-------
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19188 12 +     53730 -------aaaaaaaaaaaa
i gorGor5.CYUI01002030v1       I 6 C 0
s nomLeu3.chr1a                 40850460  4 + 122973662 -------aaaa--------
i nomLeu3.chr1a                I 3 I 1
s rheMac8.chr15                   543869  6 - 111343173 -------aaaaac------
i rheMac8.chr15                I 2 C 0
s macFas5.chr13                111136212 12 - 111193037 -------aaaaacatatat
i macFas5.chr13                I 2 C 0
s chlSab2.chr2                  66480170  5 +  90373283 -------aaaaa-------
i chlSab2.chr2                 I 3 C 0
s colAng1.NW_012121088v1           48577 12 +    168452 -------aaatatatatac
i colAng1.NW_012121088v1       I 38 C 0
s calJac3.chr1                 130415159 11 - 210400635 aaacagtaaaa--------
i calJac3.chr1                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6446066 165 -   6597006 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e cebCap1.NW_016107851v1         1090647 174 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1540307 13 -   1547936 I
e cerAty1.NW_012002921v1          430646 14 -    438202 I
e macNem1.NW_012012823v1          391784 13 +    434444 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=6797.000000
s hg38.chr14_GL000009v2_random     53375 7 +    201709 aaaaact
s panTro5.chr9                  41732950 7 + 116767853 aaaaaat
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96082625 7 - 114479721 taaaaat
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19200 7 +     53730 aaaaaaa
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   543875 7 - 111343173 aaacaaa
i rheMac8.chr15                C 0 I 4
s macFas5.chr13                111136224 7 - 111193037 atataaa
i macFas5.chr13                C 0 I 4
s chlSab2.chr2                  66480175 7 +  90373283 aaaaaaa
i chlSab2.chr2                 C 0 I 3
s colAng1.NW_012121088v1           48589 7 +    168452 acataca
i colAng1.NW_012121088v1       C 0 I 4
s calJac3.chr1                 130415170 6 - 210400635 -cagaac
i calJac3.chr1                 C 0 C 0
s aotNan1.NW_018488791v1         6446231 7 -   6597006 aaaaaat
i aotNan1.NW_018488791v1       I 165 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e cebCap1.NW_016107851v1         1090647 174 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1540307 13 -   1547936 I
e cerAty1.NW_012002921v1          430646 14 -    438202 I
e macNem1.NW_012012823v1          391784 13 +    434444 I
e nomLeu3.chr1a                 40850464 1 + 122973662 I
e ponAbe2.chr21_random           2920455 481 +   4212913 I

a score=-6942.000000
s hg38.chr14_GL000009v2_random     53382 1 +    201709 -t
s panTro5.chr9                  41732957 1 + 116767853 -t
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96082632 1 - 114479721 -t
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19207 1 +     53730 -a
i gorGor5.CYUI01002030v1       C 0 C 0
s ponAbe2.chr9                  90398143 1 + 135191526 -t
i ponAbe2.chr9                 I 41598 N 0
s rheMac8.chr15                   543886 1 - 111343173 -c
i rheMac8.chr15                I 4 I 3
s macFas5.chr13                111136235 1 - 111193037 -t
i macFas5.chr13                I 4 I 1
s colAng1.NW_012121088v1           48600 1 +    168452 -t
i colAng1.NW_012121088v1       I 4 I 1
s calJac3.chr1                 130415176 1 - 210400635 a-
i calJac3.chr1                 C 0 C 0
s aotNan1.NW_018488791v1         6446238 1 -   6597006 a-
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e cebCap1.NW_016107851v1         1090647 174 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1540307 13 -   1547936 I
e chlSab2.chr2                  66480182 3 +  90373283 I
e cerAty1.NW_012002921v1          430646 14 -    438202 I
e macNem1.NW_012012823v1          391784 13 +    434444 I
e nomLeu3.chr1a                 40850464 1 + 122973662 I

a score=10574.000000
s hg38.chr14_GL000009v2_random     53383 3 +    201709 aaa
s panTro5.chr9                  41732958 3 + 116767853 aaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96082633 3 - 114479721 aaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19208 3 +     53730 aaa
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40850465 3 + 122973662 aaa
i nomLeu3.chr1a                I 1 C 0
s rheMac8.chr15                   543890 3 - 111343173 caa
i rheMac8.chr15                I 3 C 0
s macFas5.chr13                111136237 3 - 111193037 tat
i macFas5.chr13                I 1 C 0
s macNem1.NW_012012823v1          391797 3 +    434444 aaa
i macNem1.NW_012012823v1       I 13 C 0
s cerAty1.NW_012002921v1          430660 3 -    438202 aaa
i cerAty1.NW_012002921v1       I 14 C 0
s chlSab2.chr2                  66480185 3 +  90373283 aaa
i chlSab2.chr2                 I 3 C 0
s manLeu1.NW_012105442v1         1540320 3 -   1547936 aaa
i manLeu1.NW_012105442v1       I 13 C 0
s colAng1.NW_012121088v1           48602 3 +    168452 tat
i colAng1.NW_012121088v1       I 1 C 0
s calJac3.chr1                 130415177 3 - 210400635 aaa
i calJac3.chr1                 C 0 C 0
s aotNan1.NW_018488791v1         6446239 3 -   6597006 aat
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e cebCap1.NW_016107851v1         1090647 174 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=833524.000000
s hg38.chr14_GL000009v2_random     53386 106 +    201709 -aa-aggatgttggggaggctgtggagaaaagggaa----cac----aaaccgtttgtggcaatgtaaattaattcagctactatggagagcagtttggaaattaagaact----aagaa
s panTro5.chr9                  41732961 105 + 116767853 -aa-a-gatgttggggaggctgtggagaaaagtgaa----cac----acactgtttgtggcaaagttaattaattcagctattctggagagcagtttggaaattaagaact----aagaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96082636 105 - 114479721 -aa-a-gatgttggggaggctgtggagaaaagtgaa----cac----acactgtttgtggcaaagttaattaattcagctattctggagagcagtttggaaattaagaact----aagaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19211 105 +     53730 -aa-a-gatgttggggaggctgtggagaaaagggaa----cac----acaccgtttgtggcaatgtaaattaattcagctactatggacagcagtttggaaattaagaact----aagaa
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40850468 105 + 122973662 -aa-a-gatattggggaggctgtggagaaaagggaa----cac----acgccatatgtggcaatgtaaattagttcagctactagggagagcagtttggaaattaagaact----aagaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   543893 110 - 111343173 -atca-gatgttagggaggctgtatagaaaaggaaatacttac----acactgttggtggcaatgtaaattaattcagctactatggagagcagtttggaaattaagaact----AAGAA
i rheMac8.chr15                C 0 I 353
s macFas5.chr13                111136240 105 - 111193037 -at-a-tatgttggggaggctgtggaggaaaggaaa----cac----acactgttggtggcaatataaattagttcagctgctatggagagcagtttggaaattaagtact----aagaa
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          391800 105 +    434444 -aa-a-gattttggggaggctgtggagaaaagggaa----cac----acaccgtttggggcaatgtaaattagttcagctactatggagagcagtttggaaattaagaact----aagaa
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          430663 105 -    438202 -aa-a-gatgttggggaggctgtggagaaaagggaa----cac----acaccgtttggggcaatgtaaattagttcagctactatggagagcagtttggaaattaagaact----aagaa
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66480188 105 +  90373283 -aa-a-gatgttggggaggctgtggagaaaagggaa----cac----acactgtttggggcaatataaattagtttagctactatggagagcagtttggaaattaagaact----aagaa
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1540323 105 -   1547936 -aa-a-gatgttggggaggctgtggagaaaagggaa----cac----acaccgtttggggcaatgtaaattagttcagctactatggagagcagtttggaaattaagaact----aagaa
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           48605 105 +    168452 -at-a-tatgttggggaggctgtggaggaaaggaaa----tac----acactgctggtggcaatataaattagttcagctgctatggaaagcagtttggaaattaagtact----aagaa
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415180 110 - 210400635 gat-a-gatgttggggaggctgtggagaaaaggaaa----cacttacacaccactggttgcaatgtaaattagttcagctactatggagagcagtttggaaattaggaact----aagaa
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1090821 110 +   1314817 aac-a-gatgttggggaagctatggagaaaggggaa----cacttttatactgttggtggcaatgtaaattagttcagctactatggagagcagtttggaaattaaaaact----aagaa
i cebCap1.NW_016107851v1       I 174 C 0
s aotNan1.NW_018488791v1         6446242 114 -   6597006 aac-a-gatgttggggaggctatggagaaaggggaa----cacttttatactcttggtggcaatgtaaattagtttggctactacggagagcagtttggaaattaagaactaacaaagaa
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=83952.000000
s hg38.chr14_GL000009v2_random     53492 13 +    201709 tgactgttggatg
s panTro5.chr9                  41733066 13 + 116767853 agactgttggata
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96082741 13 - 114479721 agactgttggata
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19316 13 +     53730 tgaccgttggatg
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40850573 13 + 122973662 tgattgttggatg
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111136345 13 - 111193037 tgaccgttggatg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          391905 13 +    434444 tgaccattggatg
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          430768 13 -    438202 tgaccattggatg
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66480293 13 +  90373283 tgaccgttggatg
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1540428 13 -   1547936 tgaccattggatg
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           48710 13 +    168452 tgaccattggatg
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415290 13 - 210400635 tgaccattggatg
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1090931 13 +   1314817 ctaccattggatg
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6446356 13 -   6597006 ctaccattggatg
i aotNan1.NW_018488791v1       C 0 C 0
e rheMac8.chr15                   544003 353 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=177483.000000
s hg38.chr14_GL000009v2_random     53505 23 +    201709 cagcaaccccattactatactag
s panTro5.chr9                  41733079 23 + 116767853 cagcaaccccattactacactaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96082754 23 - 114479721 cagcaaccccattactacactaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19329 23 +     53730 cagccaccccattactatactag
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40850586 22 + 122973662 cagcaa-cccattactatactag
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   544356 23 - 111343173 cagcaaccccattactatactag
i rheMac8.chr15                I 353 C 0
s macFas5.chr13                111136358 23 - 111193037 aagcaacctcattactctactag
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          391918 23 +    434444 cagcaaccccattcctatactag
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          430781 23 -    438202 cagcaaccccattcctatactag
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66480306 23 +  90373283 aagcaaccccattactacactag
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1540441 23 -   1547936 cagcaaccccattcctatactag
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           48723 23 +    168452 aagcaacaccattactatactag
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415303 23 - 210400635 cagcaaccccattactatactag
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1090944 23 +   1314817 cagcaatttcattactacactag
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6446369 23 -   6597006 cagcaatttcattactacactag
i aotNan1.NW_018488791v1       C 0 I 12
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=53141.000000
s hg38.chr14_GL000009v2_random     53528 8 +    201709 gggtatat
s panTro5.chr9                  41733102 8 + 116767853 gggtatac
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96082777 8 - 114479721 gggtatac
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19352 8 +     53730 gggtatac
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40850608 8 + 122973662 gagtatac
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   544379 8 - 111343173 gggtatac
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111136381 8 - 111193037 gggtatgc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          391941 8 +    434444 gggtatac
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          430804 8 -    438202 gggtatac
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66480329 8 +  90373283 gggtatac
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1540464 8 -   1547936 gggtatac
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           48746 8 +    168452 gggtatac
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415326 8 - 210400635 gggtatac
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1090967 8 +   1314817 ttacataa
i cebCap1.NW_016107851v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6446392 12 -   6597006 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=3762409.000000
s hg38.chr14_GL000009v2_random     53536 505 +    201709  
s panTro5.chr9                  41733110 504 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96082785 505 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19360 502 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40850616 505 + 122973662  
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   544387 504 - 111343173  
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111136389 505 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          391949 503 +    434444  
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          430812 505 -    438202  
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66480337 505 +  90373283  
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1540472 505 -   1547936  
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           48754 492 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415334 473 - 210400635  
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1090975 498 +   1314817  
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6446404 493 -   6597006  
i aotNan1.NW_018488791v1       I 12 I 96
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=15425.000000
s hg38.chr14_GL000009v2_random     54041 15 +    201709 -aaaa------aaa-------------------------aagaaAAG--
s panTro5.chr9                  41733614 16 + 116767853 -aaaa------aaa------------------------caaGAAAAG--
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083290 15 - 114479721 -aaaa------aac-------------------------aagaaAAG--
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19862 34 +     53730 -aaaa------aaaaa------aaaaaaaaaaaaaaaaaaagaaaaG--
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851121 34 + 122973662 -aaaa------aaaaa------CAAGAAAAATTTACTATAAAAAAAG--
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   544891 32 - 111343173 -aa---------------aataaaagaaAAATGTACTAT-AAAAATATT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111136894 39 - 111193037 -aaaa------aaaaaTTAATAAAAGAAAAATTTACCAT-AAAAAAG--
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392452 39 +    434444 -aaaa------aaaaaaGAAAGAAAGAAAAATTTACTAT-AAAAAAG--
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431317 36 -    438202 -aaaa------aaag---aaaGAAAGAAAAATTTACTAT-AAAAAAG--
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66480842 30 +  90373283 -aaag------aa---------aaaaaaAAATTTACTAT-AGAAAAG--
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1540977 37 -   1547936 -aaaa------aaaag--aaaGAAAGAAAAATTTACTAT-AAAAAAG--
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           49246 39 +    168452 -aaaa------aaaaaa-aGAAAAAGAAAAATTTACCATAAAAAAAG--
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415807 39 - 210400635 aaaaa------gaaaaaaGAAACAAGAAAAATTTACTAT--AAAAAA--
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1091473 36 +   1314817 GTACAATTTTTGAAAAACAAAACAAAAAAGTTATAC-------------
i cebCap1.NW_016107851v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6446897 96 -   6597006 I
e canFam3.chr2                  79160282 5271 -  85426708 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=163168.000000
s hg38.chr14_GL000009v2_random     54056 23 +    201709 TTTCCTATAAGTAGAGAACAGAA
s panTro5.chr9                  41733630 23 + 116767853 TTTACTATAAGTAGAGAACAGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083305 23 - 114479721 TTTACTATAAGTAGAGAACAGAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19896 23 +     53730 TTTACTATAAGTAGAGAATAGAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851155 23 + 122973662 TTTACTATAAGTAGAGAATATAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   544923 23 - 111343173 TTTTCTATAAGTAGAGAATAGAA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111136933 23 - 111193037 TTTAGTATAAGTAGAGAATAGAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392491 23 +    434444 TTTGCTATGAGTAGAGAATAGAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431353 23 -    438202 TTTGCTATGAGTAGAGAATAGAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66480872 23 +  90373283 TTTGCTATGAGTAGAGAATAGAA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1541014 23 -   1547936 TTTGCTATGAGTAGAGAATAGAA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           49285 23 +    168452 TTTAGTGTAAGTAGAGAATAGAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415846 23 - 210400635 TTTGCTGTAAGTAGAAAATAGAA
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1091509 23 +   1314817 TTTACTGTAAGTGGAGAATAAAA
i cebCap1.NW_016107851v1       C 0 C 0
s canFam3.chr2                  79165553 16 -  85426708 TTTTCTAGAAGTGG-------AA
i canFam3.chr2                 I 5271 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6446897 96 -   6597006 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e dasNov3.JH570393               1791534 6079 -   2296528 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=251516.000000
s hg38.chr14_GL000009v2_random     54079 36 +    201709 ATTTCTTTTTAAG---AT-AAAATTTATTGAAGT-AAAAAA
s panTro5.chr9                  41733653 36 + 116767853 ATTTCTTTTTAAG---AT-AAAATTTATTGAAGT-AAAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083328 36 - 114479721 ATTTCTTTTTAAG---AC-AAAATTTATTGAAGT-AAAAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19919 36 +     53730 ATTTCTTTTTAAG---AT-AAAATTTATTGAAGT-AAAAAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851178 36 + 122973662 ATTTCATTTTAGG---AT-AAAATTTGTTGAAGT-AAAAAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   544946 36 - 111343173 ATTTCTTTTTAAG---AA-AAAATTTATTGATGT-AAAAAA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111136956 38 - 111193037 ATTTCTTTTTAAG---ATAAAAATTTATTGGAGTAAAAAAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392514 36 +    434444 ATTTCTTTTTAAG---AT-AAAATTTATTGAAGT-AAAACA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431376 38 -    438202 ATTTCTTTTTAAG---ATAAAAATTTATTGGAGTAAAAAAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66480895 36 +  90373283 ATTTCTTTTTAAG---AT-AAAATTTATTGAAGT-AAAACA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1541037 36 -   1547936 ATTTCTTTTTAAG---AT-AAAATTTATTGAAGT-AAAACA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           49308 37 +    168452 ATCTCTTTTTAAG---AT-AAAATTTATTGGAGTAAAAAAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415869 32 - 210400635 ATTCCTTTTTAAG---AA-AAAATTTATTGAAG-----AAA
i calJac3.chr1                 C 0 I 1
s cebCap1.NW_016107851v1         1091532 36 +   1314817 AATGTACTTTAAA---GA-AAAATTTTTTGAAGT-AAAAAA
i cebCap1.NW_016107851v1       C 0 I 1
s canFam3.chr2                  79165569 36 -  85426708 AGCTCATTCTGAG---GA-ATAATTTATTAAAGC-AAATAA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1797613 39 -   2296528 ATTTTATTTTAAGGAAAA-AAAATCCATAAAAGT-AAAAAA
i dasNov3.JH570393             I 6079 I 2
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6446897 96 -   6597006 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=44674.000000
s hg38.chr14_GL000009v2_random     54115 6 +    201709 TGGATT
s panTro5.chr9                  41733689 6 + 116767853 TGTGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083364 6 - 114479721 TGGGTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19955 6 +     53730 TGGATT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851214 6 + 122973662 TGGATT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   544982 5 - 111343173 T-GATT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111136994 6 - 111193037 CAGATT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392550 6 +    434444 TGGATT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431414 6 -    438202 CAGATT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66480931 6 +  90373283 TGGATT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1541073 6 -   1547936 TGGATT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           49345 6 +    168452 TGGATT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415902 6 - 210400635 TGGATT
i calJac3.chr1                 I 1 C 0
s cebCap1.NW_016107851v1         1091569 6 +   1314817 TGGATT
i cebCap1.NW_016107851v1       I 1 C 0
s aotNan1.NW_018488791v1         6446993 6 -   6597006 TGGATT
i aotNan1.NW_018488791v1       I 96 C 0
s canFam3.chr2                  79165605 6 -  85426708 CTGATC
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1797654 6 -   2296528 TAGGTT
i dasNov3.JH570393             I 2 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e otoGar3.GL873538              19690072 4879 -  27850971 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=337344.000000
s hg38.chr14_GL000009v2_random     54121 40 +    201709 AAAT----TTTTATAAAGGGCAGAGTTTT-CTAAGAATTTCAAAG
s panTro5.chr9                  41733695 40 + 116767853 AAAC----TTTTATAAAGGGCAGAGTTTT-CTAAGAATTTCAAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083370 40 - 114479721 AAAC----TTTTATAAAGGGCAGAGTTTT-CTAAGAATTTCAAAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           19961 40 +     53730 AAAC----TTTTATAAAGGGCAGAGTTTT-CTAAGAATTTCAAAG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851220 41 + 122973662 AAAC----TTTTATAAAGGGCAGAGTTTTGCTAAGAATTTCAAAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   544987 42 - 111343173 AAACT---TTTTATAAAGGGCAGAGTTTTGCTAAGAATTTCAAAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111137000 41 - 111193037 AAAC----TTTTATAAAGGGGAGAGTTCTGCTAAGAATTTCAAAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392556 40 +    434444 AAGC-----TTTATAAAGGGCAGAGTTTTGCTAAGAATTTCAAAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431420 41 -    438202 AAAC----TTTTATAAAGGGCAGAGTTTTGCTAAGAATTTCAAAG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66480937 40 +  90373283 AAAC-----TTTATAAAGGGCAGAGTTTTGCTAAGAATTTCAAAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1541079 40 -   1547936 AAAC-----TTTATAAAGGGCAGAGTTTTGCTAAGAATTTCAAAG
i manLeu1.NW_012105442v1       C 0 I 790
s colAng1.NW_012121088v1           49351 41 +    168452 AAAC----TTTTATAAAGGGCAGAGTTTTGCTAAAAATTTCAAAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415908 41 - 210400635 AAAC----TTTTATAAAGGACAGAGTTTTGCTAAGAGTTTCAAAG
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1091575 40 +   1314817 AAAC-----TTTATAAAGAGCAGAGTTTTTCTAAGAATTTCAAAA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6446999 25 -   6597006 AAAC----TTCTATAAAGAGCATAGtttt----------------
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19694951 31 -  27850971 AAAT----CTTTATATAGGACAGAGTTTTGCTAAG----------
i otoGar3.GL873538             I 4879 C 0
s canFam3.chr2                  79165611 40 -  85426708 AAAC----TTTCATAAAGGGCACTTATTC-CTGAAAATCATAAAG
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1797660 32 -   2296528 ----CACTTTTTATAAAGGACAGAGTTTTGTTAATG---------
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=176306.000000
s hg38.chr14_GL000009v2_random     54161 26 +    201709 -CAATGC-ATTCATTGCAAAAGATGGC----T
s panTro5.chr9                  41733735 26 + 116767853 -CAATCC-ATTCATTGTAAAAGATGAC----T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083410 26 - 114479721 -CAATCC-ATTCATTGTAAAAGATGAC----T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           20001 26 +     53730 -CAATGC-ATTCATTGCAAAAGATGGC----T
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851261 26 + 122973662 -CAATGC-ATTCACTGCAAAAGATGAC----T
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   545029 26 - 111343173 -CAATGC-ATTCATTGCAAAATATGAC----T
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111137041 25 - 111193037 -TAATGC-ATTCATTGTAAAAGATGAC-----
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392596 30 +    434444 -CAATGC-ATTCATTGCAAAAGATGACTTTAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431461 30 -    438202 -CAATGC-ATTCATTGCAAAAGATGACTTTAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66480977 30 +  90373283 -CAATAC-ATTCTTTGCAAAAGATGACTTTAT
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           49392 25 +    168452 -TAATGC-ATTCATTGTAAAAGATGAC-----
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415949 26 - 210400635 -CAATGC-ATTCCTTGCAAAATATAAC----T
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1091615 26 +   1314817 -TAATGC-ATTCATTGCAAAATATGAC----T
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19694982 27 -  27850971 -TAATGCTATTCATTGCAAAATATGAC----T
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79165651 24 -  85426708 -TATTAC-ATTAAGTGTAAA--Atgac----t
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1797692 27 -   2296528 CAAATGC-ATTTGGTGTAAAACATGAT----T
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6447024  0 -   6597006 C
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1541119 790 -   1547936 I

a score=5634.000000
s hg38.chr14_GL000009v2_random     54187 1 +    201709 T
s panTro5.chr9                  41733761 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083436 1 - 114479721 T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           20027 1 +     53730 T
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851287 1 + 122973662 T
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   545055 1 - 111343173 T
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          392626 1 +    434444 T
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431491 1 -    438202 T
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66481007 1 +  90373283 T
i chlSab2.chr2                 C 0 C 0
s cebCap1.NW_016107851v1         1091641 1 +   1314817 T
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19695009 1 -  27850971 T
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79165675 1 -  85426708 c
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1797719 1 -   2296528 T
i dasNov3.JH570393             C 0 I 1
e calJac3.chr1                 130415975 0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6447024 0 -   6597006 C
e colAng1.NW_012121088v1           49417 0 +    168452 C
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1541119 790 -   1547936 I
e macFas5.chr13                111137066 0 - 111193037 C

a score=7960.000000
s hg38.chr14_GL000009v2_random     54188 2 +    201709 TA
s panTro5.chr9                  41733762 2 + 116767853 TA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083437 2 - 114479721 TA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           20028 2 +     53730 TA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851288 2 + 122973662 TA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   545056 2 - 111343173 TA
i rheMac8.chr15                C 0 C 0
s macNem1.NW_012012823v1          392627 2 +    434444 TA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431492 2 -    438202 TA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66481008 2 +  90373283 TA
i chlSab2.chr2                 C 0 C 0
s cebCap1.NW_016107851v1         1091642 2 +   1314817 TA
i cebCap1.NW_016107851v1       C 0 I 9
s otoGar3.GL873538              19695010 2 -  27850971 GA
i otoGar3.GL873538             C 0 C 0
e calJac3.chr1                 130415975 0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6447024 0 -   6597006 C
e canFam3.chr2                  79165676 0 -  85426708 C
e colAng1.NW_012121088v1           49417 0 +    168452 C
e dasNov3.JH570393               1797720 1 -   2296528 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1541119 790 -   1547936 I
e macFas5.chr13                111137066 0 - 111193037 C

a score=520.000000
s hg38.chr14_GL000009v2_random     54190 14 +    201709 ATTACTTAATCttt
s panTro5.chr9                  41733764 14 + 116767853 ATTACTTAATATAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083439 14 - 114479721 ATTACTTAATCttt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           20030 10 +     53730 ATTACTTAAT----
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851290 12 + 122973662 ATTATTTAAt--tt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   545058 11 - 111343173 ATTGTTTAAC---C
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111137066  7 - 111193037 ----TTTAAt---t
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392629 11 +    434444 Attttttaat---t
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431494  9 -    438202 ATTTTTAAA-----
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66481010  9 +  90373283 Attttttga-----
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           49417  7 +    168452 ----TTTAAt---t
i colAng1.NW_012121088v1       C 0 C 0
s aotNan1.NW_018488791v1         6447024  9 -   6597006 --tctttttc---t
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19695012 14 -  27850971 ATTATTTAACATTT
i otoGar3.GL873538             C 0 I 194
s canFam3.chr2                  79165676 13 -  85426708 -ttgtttaaacttt
i canFam3.chr2                 C 0 C 0
e calJac3.chr1                 130415975  0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e dasNov3.JH570393               1797720  1 -   2296528 I
e cebCap1.NW_016107851v1         1091644  9 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1541119 790 -   1547936 I

a score=146282.000000
s hg38.chr14_GL000009v2_random     54204 38 +    201709 tttttttttttttttttgtgagacagggtctcact-ctg
s panTro5.chr9                  41733778 34 + 116767853 Attttttttttttt----tgagacagggtctcact-ctg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083453 35 - 114479721 ttttttttttttttt---tgagacagggtctcact-ctg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           20040 33 +     53730 -TAttttttttttt----tgagacagggtcccact-ctg
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851302 34 + 122973662 tttttttttttttt----tgagtcagggtctcact-ctg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   545069 31 - 111343173 ttttttttcttttt-------atccgagtctcact-ctg
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111137073 34 - 111193037 ttctttttcttttt----tgagaaaaggtctcact-ctg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392640 34 +    434444 tttttttttttttt----tgagacagggtctcact-ctg
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431503 33 -    438202 -ttttttttttttt----tgagacagggtctcact-ctg
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66481019 27 +  90373283 -------ttttttt----tgagacagggtctcact-ctg
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           49424 34 +    168452 ttttttttcttttt----tgagacagggtctcact-ctg
i colAng1.NW_012121088v1       C 0 C 0
s aotNan1.NW_018488791v1         6447033 35 -   6597006 tttttctttttttt----tgaggcggagtttagctgttg
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79165689 26 -  85426708 --------ttgtct----ttggccagggcctgatc-ctg
i canFam3.chr2                 C 0 I 8324
e calJac3.chr1                 130415975  0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e otoGar3.GL873538              19695026 194 -  27850971 I
e dasNov3.JH570393               1797720  1 -   2296528 I
e cebCap1.NW_016107851v1         1091644  9 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1541119 790 -   1547936 I

a score=1241630.000000
s hg38.chr14_GL000009v2_random     54242 260 +    201709 tca-ccaggctggagtgcagcggtgcagtcttggctcactgcaacctccacctcctggcttcaagcaattctcctgccttagtatcccaagtagctgggactacaggtgcacatcaccacgcccagctaa---tttttgtatttttagtagagatggggtttccccatgttggccaggatggtcacgatctcctgaccttgtgatctgcttgctttggcctccccaagtgctgggattacaggtatgagccaccatgcctggcc
s panTro5.chr9                  41733812 259 + 116767853 tca-ccaggctggagtgcagtggtgcagtcttggctcactgcaacctccacctcctggcttcaagcaattctcctgccttagtatcccaagtagctgggactacaggtgcgcatcaccacgcccagctaa---tttttttatttttagtagagatggggtttccccatgttggccaggatggtcacgatctcctga-cttgtgatctgcctgctttggcctccccaagtgctgggattacaggtatgagccaccatgcctggcc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083488 259 - 114479721 tca-ccaggctggagtgcagtggtgcagtcttggctcactgcaacctccacctcctggcttcaagcaattctcctgccttagtatcccaagtagctgggactacaggtgcgcatcaccacgcccagctaa---tttttttatttttagtagagatggggtttccccatgttggccaggatggtcacgatctcctga-cttgtgatctgcctgctttggcctccccaagtgctgggattacaggtatgagccaccatgcctggcc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           20073 258 +     53730 tca-ccaggctggagtacagtggtgcagtcttcgctcactgcaacctccatctcctggcttcaagcaattctcctgccttagcctcccaagtagctgggactacaggttcgcatcacca--cccagctaa---tttttgtatttttagtagagatggggtttccccatgttggccaggatggtcacgatctcctgaccttgtgatctgcctgctttggcctccccaagtgctgggattacaggtatgaaccaccatgcctggcc
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851336 250 + 122973662 tca-ccaggctggagtgcagtggtgcaatcttggctcactgcaacctccacctcctgacttcaagcaattctcctgccttagcctcc-------ctggg---acaggtgcgtgtcaccacacccagctaa---tttctatatttttagtagagatggggtttccccatgttgaccaggaaagtctcaatctcctgacctcatgatctgcctgccttggcctccccaagtgctgggattataggcatgagtcaccacgcctggcc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   545100 258 - 111343173 tca-ttagactggagtgcagtggcacaatctcagctcactgcaatctacgcctcctgacttcgagtgattttcctgcctcagccgcctgagtagctgggactacaggcatgcgccaacatgcccagctaa---tttttgtatttttagtagagacagggtttcaccatgttggccaggatggtctcgatctcttgaccttgtgatctgcccacctttgcctccaaaagtgctgggattacaggtgtgagccgccgtgaccag--
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111137107 259 - 111193037 ttg-ccagtctggagtgcagtggtgcaatattggctcactgcaacctccaacccctggcttcaagtaattttcctgccttagcctcccaagtagctgggactacaggtgtgggccaccacgtctagctaa----ttttgtatgtttagtagagaccaggtttcctcatgttggccaggatggtctcgatcacctgacctcgtgatcttcccgccttggcctctccaagtgctgggattccaggcatgagccaccacacctggcc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392674 257 +    434444 tcg-ccaggctggagtatagtggtgcaatcttggctcactgcaatctccacttcctggtttcaagcaattctcctgccttagcctcccaagtagctggg---acaggtgtgtgtcaccacacccagctaa---tttttgtatttttagtagaactggggtttccccgtgtttgccaggatggtctcgctctcctgatctcgtgatctgcctgccttggcctccccaagtgctgggattacaggcatgagccaccatgcctggcc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431536 257 -    438202 tcg-ccaggctggagtatagtggtgcaatcttggctcactgcaatctccacctcctggtttcaagcaattctcctgccttcgcctcccaagtagctggg---acaggtgtgtgtcaccacacccagctaa---tttttgtatttttagtagaactggggtttccccgtgtttgccaggatggtctcgctctcctgatctcgtgatttgcctgccttggcctccccaagtgctgggattacaggcatgagccaccatgcctggcc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66481046 257 +  90373283 tcg-ccaggctggagtatagtggtgcaatcttggctcactgaaatctccacctcctggcttcaagcaatgctcctgccttagccttccaagtagcgggg---acaggtacacgtcaccacacccagctaa---tttttgtatttttagtagagctgggggttccccatgttggccaggttggtctcacgctcctgatctcgtgatctgcctgccttggcctccccaagtgctgggattacaggcatgagccaccacgcctggcc
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           49458 260 +    168452 ttg-ccagtctggagtgtaatggtgcaatattggctcactgcaacctccaacccctggcttcaagaaattttcctgtcttagcctcccaagtagctgggactacaggtttgtgccaacacgcccagctca---tttttgtatttttagtagagaccaggtttcctcatgttggccaggatggtcttgatcacctgacctcgtgatcttcccgccttggcctctccaagtgttgggattccaggcatgagccaccaggcctggcc
i colAng1.NW_012121088v1       C 0 C 0
s aotNan1.NW_018488791v1         6447068 264 -   6597006 ttacccagactggagtgcagtggcgcgatctcggctcaccgcaacctccgcctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcgcgcaccaccgcgtccagctaattttttttgtacttttagtagagacggggtttcaccttgttgaccaggatggtttcgatctcttaacctcgtgatccacccgccttggcctcccaaagtgctgggattataggcatgagccaccgcaccaggcc
i aotNan1.NW_018488791v1       C 0 C 0
e calJac3.chr1                 130415975   0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79165715 8324 -  85426708 I
e otoGar3.GL873538              19695026 194 -  27850971 I
e dasNov3.JH570393               1797720   1 -   2296528 I
e cebCap1.NW_016107851v1         1091644   9 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1541119 790 -   1547936 I

a score=6006.000000
s hg38.chr14_GL000009v2_random     54502 1 +    201709 A
s panTro5.chr9                  41734071 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083747 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           20331 1 +     53730 A
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851586 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111137366 1 - 111193037 A
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392931 1 +    434444 A
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431793 1 -    438202 A
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66481303 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           49718 1 +    168452 A
i colAng1.NW_012121088v1       C 0 C 0
s aotNan1.NW_018488791v1         6447332 1 -   6597006 A
i aotNan1.NW_018488791v1       C 0 I 65
s dasNov3.JH570393               1797721 1 -   2296528 A
i dasNov3.JH570393             I 1 C 0
e calJac3.chr1                 130415975 0 - 210400635 C
e rheMac8.chr15                   545358 0 - 111343173 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79165715 8324 -  85426708 I
e otoGar3.GL873538              19695026 194 -  27850971 I
e cebCap1.NW_016107851v1         1091644 9 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1541119 790 -   1547936 I

a score=38742.000000
s hg38.chr14_GL000009v2_random     54503 8 +    201709 TTGTTTAA
s panTro5.chr9                  41734072 8 + 116767853 TTGTTTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083748 8 - 114479721 TTGTTTAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           20332 8 +     53730 TCGTTTAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851587 8 + 122973662 TTGTTTAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111137367 8 - 111193037 TTGTTTAA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392932 8 +    434444 TCGTTTAA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431794 8 -    438202 TCGTTTAA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66481304 8 +  90373283 TCGTTTAA
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           49719 8 +    168452 TTGCTTAA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415975 8 - 210400635 TTGTTTAA
i calJac3.chr1                 C 0 C 0
s dasNov3.JH570393               1797722 8 -   2296528 TTGTTAAT
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   545358 0 - 111343173 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6447333 65 -   6597006 I
e canFam3.chr2                  79165715 8324 -  85426708 I
e otoGar3.GL873538              19695026 194 -  27850971 I
e cebCap1.NW_016107851v1         1091644 9 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1541119 790 -   1547936 I

a score=6829.000000
s hg38.chr14_GL000009v2_random     54511 2 +    201709 CC---
s panTro5.chr9                  41734080 2 + 116767853 CC---
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083756 2 - 114479721 CC---
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           20340 2 +     53730 CC---
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851595 2 + 122973662 CC---
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111137375 2 - 111193037 CC---
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392940 2 +    434444 CC---
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431802 2 -    438202 CC---
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66481312 2 +  90373283 CC---
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           49727 2 +    168452 CC---
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415983 2 - 210400635 CC---
i calJac3.chr1                 C 0 C 0
s aotNan1.NW_018488791v1         6447398 2 -   6597006 CT---
i aotNan1.NW_018488791v1       I 65 C 0
s dasNov3.JH570393               1797730 5 -   2296528 CTTTC
i dasNov3.JH570393             C 0 C 0
e rheMac8.chr15                   545358 0 - 111343173 C
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79165715 8324 -  85426708 I
e otoGar3.GL873538              19695026 194 -  27850971 I
e cebCap1.NW_016107851v1         1091644 9 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1541119 790 -   1547936 I

a score=121611.000000
s hg38.chr14_GL000009v2_random     54513 21 +    201709 TTTGTACTAATA-----AA----------ACACTAC
s panTro5.chr9                  41734082 21 + 116767853 TTTGTACTAATA-----AA----------ACACTAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083758 21 - 114479721 TTTGTACTAATA-----AA----------ACACTAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           20342 21 +     53730 TTTGTACTAATA-----AA----------ACACTAC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851597 21 + 122973662 TTTGTACTAATA-----AA----------ACACTAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   545358  1 - 111343173 -----------------------------------c
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111137377 20 - 111193037 TTTGTACTAAT------AA----------ACACCAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          392942 21 +    434444 TTTGTACTAATA-----AA----------ACACTAC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          431804 21 -    438202 TTTTTACTAATA-----AA----------ACACTAC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66481314 21 +  90373283 TTTGTACTAATA-----AA----------ACACTAC
i chlSab2.chr2                 C 0 C 0
s colAng1.NW_012121088v1           49729 20 +    168452 TTTGTACTAAT------AA----------ACACCAC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130415985 21 - 210400635 ATTGTACTAACA-----AA----------ACACCAC
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1091653 21 +   1314817 TTTGTAGTAATA-----AA----------ACACCAC
i cebCap1.NW_016107851v1       I 9 C 0
s aotNan1.NW_018488791v1         6447400 21 -   6597006 TTTGTACTAAGA-----AA----------ACACCAC
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19695220 31 -  27850971 TTTATACTAATA-----AAAAGAAATATCACTCTTC
i otoGar3.GL873538             I 194 C 0
s dasNov3.JH570393               1797735 26 -   2296528 TTTGTACTACTAAGATCAA----------ACATGAC
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e canFam3.chr2                  79165715 8324 -  85426708 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1541119 790 -   1547936 I

a score=3250655.000000
s hg38.chr14_GL000009v2_random     54534 428 +    201709 CT-TTCTAAAATCATGTATATGCAA-TAGATCAA-TATTAACTGCA-TTTTTGTCAGATTACTCTAAACA--------G-------CATTACACATATACAT---CCTCTGT------TATCTAAAC-----TTAAAATAAGTAGAAattttattttatttatgtgattatttttct---atttAAGCAAACTT-CAAGTAATGTCTAGTCACTAAAAATACTA----AAGGCCACATTTT-GTAAGTGATACATGATTTTCATGATAATG----TTTCTTGTTTAATTTAGACattatt-atta--tttttacttattttaGATGGGGCTGGACTGTGTAGAATAAATAATTAGAGAAACAAAGAGAAGTACGTTGACAAAATTTATTAATTAAATTTAGGT-----TTATTTTAGAAATAAAGTGTAAATAGCAAATGGCATTCCTTTTC-ATTCTTGGGTTAGTAGATACTACATCA---ATA-
s panTro5.chr9                  41734103 428 + 116767853 CT-TTCTAAAATCATGTATATGCAA-TAGATCAA-TATTAACTGCA-TTTTTGTCTGATTACTCTAAACA--------G-------CATTACACATATACAT---CCTCTGT------TATCTAATC-----TTAAAATAAGTAGAAATtttactttatttatgtgattatttttct---atttaAGCAAACTT-CAAGTTATGTCTAGTCACTAAAAATACTA----AAGGCCACATTTT-GTAAGTGATACCttatttttatgataatg----tttcttgtttaacttaaatattatt-atta--tttttacttattttaGATGGAGCCGGACTGTGTAGAACAAATAATTAGAGAAACAAAGAGAAGTACATTGCCAAAATTTATTAATTAAATTTAGGT-----TTATTTTAGAAATAAAGTGTAAATAGCAAATGGCATTCCTTTTC-ATTCTTGGGTTAGTAGATACTACATCA---ATT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96083779 428 - 114479721 CT-TTCTAAAATCATGTATATGCAA-TAGATCAA-TATTAACTGCA-TTTTTGTCTGATTACTCTAAACA--------G-------CATTACACATATACAT---CCTCTGT------TATCTAATC-----TTAAAATAAGTAGAAATTTTACTTTATTTATGTGATTATTTTTCT---ATTTAAGCAAACTT-CAAGTTATGTCTAGTCACTAAAAATACTA----AAGGCCACATTTT-GTAAGTGATACCttatttttatgataatg----tttcttgtttaacttaaatattatt-atta--tttttacttattttaGATGGAGCCGGACTGTGTAGAACAAACAATTAGAGAAACAAAGAGAAGTACATTGCCAAAATTTATTAATTAAATTTAGGT-----TTATTTTAGAAATAAAGTGTAAATAGCAAATGGCATTCCTTTTC-ATTCTTGGGTTAGTAGATACTACATCA---ATT-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           20363 438 +     53730 CT-TTCTAAAATCATGTATATGCAA-TAGATCAA-TATTAACTGTA-TTTTTGTCCGATTAGAGTAATCG--------GACAAACACATTACACATATACAT---ACTCTGC------TATCTAAAC-----TTAAAATAAGTAGAAATtttactttatttatgtgattatttttct---atttaAGCAAACTT-CAAGTTATGTCTAGTCACTAAAAATACTA----AAGGCCACATTTT-GTAAATGATACattattttcattagaatg----tttcttgtttaacttaaatattatt-atta--tttttacttattttaGGTGGAGCTGGACTGTGTAGAAAAAATAATTAGAGAAACAAAGAGAAGTATGTTGCCAAAATTTATTAATTAAATTTAGGT-----TTATTTTAGAAATAAAGTGTAAATAGCAAATGGCATTCCTTTTC-ATTCTTGGGTTAGTAGATACTACGTCAAGTATT-
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40851618 426 + 122973662 CT-TTCTAAAATCGTGCATATGCAA-TAGACCAC-TATTAACTGTA-TTTTTGTCAGATTG-TCTAAACA--------G-------CATTACACAGATACAT---CCTCTGT------TATCTAAAC-----T-----TAAGTAGAAATTTTACTTTATTTATGTGATTATTTTTCT---ATTTAAGCAAACTT-CAAGTTATGTCTAGTCACTAAAAATACTA----AAGGCCACATTTT-GTAAGTGATATATTATTTTCATGATAATG----TTCCTTGTTTAACTTAAACATTATTAATTA--TTTTTACTTATTTTAGATGCAGCTGGACTGTGTAGAACAAATAATTAGAGAAACAAAGAGAAGTATGTGGCCAAAATTTATTAATTAAATTTAGGT-----TTATTTTAGAAATAAAGTGTAAATAGCAAATGGCATTCCTTTTC-ATTGTTGGGTTAGTAGGTACTACGTCAAGTATT-
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   545359 412 - 111343173 cT-TTCTAAAATTATGTATATCCAA-TAGACCAA-TATTATC--TA-TTTTTGTCAGATTACTCTAAATA--------G-------CATTACACAGATACAG---CCTCTAT------TATCTAAAC-----TTAAAATAAGTAGAAATTTTACT-----TATGTGATTATTTTTCT---GTCTAAGCAAAC-------TTATGTCTAGTCACTAAAAATTCTA----AAGGCCACATTTT-GTAAGTGATATCTTATTCTCATGATAATG----TCTCCTGTTTAACTTAAACATTAT---TTT--TTTAAACTTATTTTAGATGGAGCCGGACTGTGTAGAACAAATAATTAGAGAAACAAAGAAAAGTATGTTGCCAAAATTTATTAATTAAATTTAGGT-----TTATTTTAGTAATAAAGTGTAAATAGCAAATGGCATTCCTTTTC-ATTG-TGGGTTAGTAGATACTATGTAC---AGT-
i rheMac8.chr15                C 0 I 2
s macFas5.chr13                111137397 426 - 111193037 CT-TTCTAAAATTATGTATATGCAA-TAGACCAA-TATTAACTGTG-TTTTTGTCCAATTACTCTAAGCA--------A-------CATTACACAGATACAT---CCTCTGT------TATCTAAA------TTAAAATAAGTAGAAAATTTACTTTATGTATGTGATTATTTTTCT---TTTGAAGCAAACTT-CAAGTTATGTCTAGTCACTAAAAATACTA----AAGACCACAATTT-GTAAGTGATATATTATTTTCATGATAATG----TTTTTTGTTTAACTTAAACATTATT-ATTA--TTTTCACTTATTTTAGATGGAGCTGGACTGTGTAGAACAAATAATTAGAGAGACAAAGAGAAGTATGTTACCAAAATTTATTCCTTAAATTTAGGT-----TTATTTTAGAAATAAAATTT-AATAACAAATGGCATTCCTTTTC-ATTGTTGGGTTAGTAGATACCATCTTA---AGT-
i macFas5.chr13                C 0 I 2
s macNem1.NW_012012823v1          392963 424 +    434444 CT-TTCTAAAATCATGTATATTCAG-TAGACCAA-TATTAACTGTA-TTTTTGTCAGATTACTCTAAACA--------G-------CATTACACAGATACAT---CCTCTGT------TATCTAAAC-----TTAAAATAAGTAGAAATTTTACTT----TATGTGATTATTTTTCT---ATTTAAGCAAACTT-CGAGTTAAGTCTAGTCACTAAAAGTACTA----AAGGCCACATTTT-ATAAGTGACATATTATTTTCATAGTAATG----TTTCTTGTTTAACTTAAACattatt-atta--tttttacttattttaGATGGAGCTGGACTGTGTAGAACAAATAATTAGAGAAACAAAGAGAAGTATGTTTCCAAAATTTATTAATTAAATTTAGGT-----TTATTTTAGAAATAAAATGTAAATAGCAAATGGCATTATTTTTC-ATTGTTGGGTTAGTAGATACTGTGTCA---AGt-
i macNem1.NW_012012823v1       C 0 I 2
s cerAty1.NW_012002921v1          431825 425 -    438202 CT-TTCTAAAATCATGTATATTCAG-TAGACCAA-TATTAACTGCA-TTTTTGTCAGATTACTCTAAACA--------G-------CATTACACAGATACAT---CCTCTGT------TATCTAAAC-----TTAAAATAAGTAGAAATTTTACTTTATTTATGTGATTATTTTTCT---ATTTAAGCAAACTT-TGAGTTAAGTCTAGTCACTAAAAGTACTA----AAGGCCACATTTT-ATAAGTGACATATTATTTTCATAGTAATG----TTTCTTGTTTAACTTAAACATTA----TTA--TTTTTACTTATTTTAGATGGAGCTGGACTGTGCAGAACAAATAATTAGAGAAACAAAGAGAAGTATGTTTCCAAACTTTATTAATTAAATTTAGGT-----TTATTTTAGAAATAAAATGTAAATAGCAAATGGCATTATTTTTC-ATTGTTGGGTTAGTAGATACTGTGTCA---AGt-
i cerAty1.NW_012002921v1       C 0 I 2
s chlSab2.chr2                  66481335 422 +  90373283 CT-TTCTAAAATCATGTATATTCAG-TAGACCAA-TATTAACTGTA-TTTTTGTCAGATTACTCTAAACA--------G-------CATTACACAGATACAT---CCTCTGT------TATCTAAAC-----T-----TAAGTAGAAATTTTACTTTATTTATGTGATTATTTTTCT---ATTTAAGCAAACTT-TCAGTTATGTCTACTCACTAAAAGTACCG----AAGGCCACATTTT-GTAAGTGACATATTATTTTCATAGTAATG----TTTCTTGTTTAACTTAAACattatt-atta--tttttacttattttaGATGGAGCTGGACTGT-TAGAACAAATAATTAGAGAAACAAAGAGAAGTATGTTTCCAAAATTTATTAATTAAATTTAGGT-----CTATTTTAGAAATAAAATGTAAATAGCAAATGGCATTATTTTTC-ATTGTTGGGTTAGTAGATACTATGTCA---AGT-
i chlSab2.chr2                 C 0 I 2
s colAng1.NW_012121088v1           49749 426 +    168452 CT-TTCTAAAATCATGTATATGCAA-TAGACCAA-TATTAACTGTA-TTTTTGTCCGATTACTCTAAGCA--------G-------CATTACACAGATACAT---GCTCTGT------TATCTAAA------TTAAAATACATAGAAAATTTACTTTATGTATGTGATTATTTTTCT---TTTGAAGCAAACTT-CAAGTTATATCTAGTCACTAAAAATACTA----AAGGCCACAATTT-GTAAGTGATAtattattttcatgataatg----tttcttgtttaacttaaatattatt-atta--ttttcacttattttaGATGGAGCCGGACTGT-TAGAACAAATAATTAGAGAAACAAAGAAAAGTATGTTGCCAAAATTTATTCCTTAAATTTAGGT-----TTATTTTAGAAATAAAATGTAAATAACAAATGGCATTCCTTTTC-ATTGTTGGGTTAGTAGATAGCACGGTA---AGT-
i colAng1.NW_012121088v1       C 0 I 2
s calJac3.chr1                 130416006 412 - 210400635 CT-TTCTAAAATTATGTATATGCAA-TAGACCAG-TATTAATTGTA-TTTTTATTAGATAAATTTAAACA--------G-------CATTATACAGATACAT---CTTCTAT------TATCTAAAC-----TGAAAATAAGTAGAAATTTTACTT----TATGTGATTATTTTCCT---ATTTAAGCAAACAT-CAAGTTGTGTCTAGTCACTGTAAATACTA----AATGCCACATTTTTGTAAGTGATATATTATTCTCATGATAATG----TCTCTTGTTTAA--GAAACTTTTTT---TT--CTTTTACTTATTTTAGATGGAGCTGGACTGTGTAGAACAAATAAAGAAAGA--------GAAGTATGTTGCCAAAATGTATTAATCAAATTTAGG------TTATTTTAGAAATAACGTATAAATAGCAAATGGCATTTTTTTTC-ATTGTTGGGTTAGTGGATACTACGTTA---AGT-
i calJac3.chr1                 C 0 I 1
s cebCap1.NW_016107851v1         1091674 416 +   1314817 CT-TTCTGAAATTATGTATATGCAA-TAGACCAA-TATTAATTATA-TTTTGATCAGATTAATCTAAACA--------G-------CATTACACAGATACAT---TTTCTAT------TATCTAAAT-----TTAAAATAAGTAGAAATTTTGTTT----TATTTTTGTCCTTTTTTAAAATTTAAGCAGCCCT-CAAGTTATGTCTAGTTACTAAAAATATGA----GAGACTACACGTT-----GTGATGTATTATTCCCATGATAATG----TCTCTTGTTT------AACTTTATC-AATT--TTTTTACTTATTTTAGACTCAGTTGGACTGTAAAGAACAAATAATTAGAGAAACAAAT-AAAGAATGCTGCCAAAATGTTTTAACTAGATTTAGGT-----TTATTTTAGAAATAAAGTGTAAATAGCTAATGAAATTCCTTTTC-ATTGTTGGGTTAGTAGATACTATGTTA---AGT-
i cebCap1.NW_016107851v1       C 0 I 1
s aotNan1.NW_018488791v1         6447421 419 -   6597006 CT-TTCTGAAATTATGTGTATGCAA-TAGACCAA-TATTAATTATA-TTTTTATCAGATTAATCTAAACA--------G-------CATTACACAGATACAT---TTTCTAT------TATCTAAAT-----TTAAAATAAGTAGAAATTTTGTTT----T---TTTTTCATTTTTTAAAATTTAAGCAGCCCT-CAAGTTATGTCTAGTTACTAAAAATACTA----GAGACTACATGTT-----GTGATATATTATCCTCATGATAATG----TCTCTTGTTTAACTTAAACATTATC-AATT--TTTTTACTTATTTTAGACTCAGTTGGACTGTGAAGAACAAATAATTAGAGAAACAAAT-AAAGAATGTTGCCAAAATGTTTGAATTAGATTTAGGT-----TTATTTTAGAAATAAAGTATAAATAGCTAATGAAATTCCTTTTT-ATTGTTGGGTTAGTAGATACTATGTTA---AGG-
i aotNan1.NW_018488791v1       C 0 I 1
s otoGar3.GL873538              19695251 411 -  27850971 CTCTTCTGAAATGATATACATTCAA-TAGGCCAA-AATTAATGACACTTTTTATCAGATTAATCTAAAAA--------G-------CATTATACTGATGAGG---TCTGTCTGGAAAGTATCCAACCAGGCAGCATAAAAAATAGTAACAGGGC----------TGAATACTTTCTG---AATATAGC--CCTTGCGTGTATTCTCTATTATCTAAAATTAA--------------------ATAAGTAAGA----------ATTTTAATG----TCTTCTGTTTAACTTAAACATTATA-AATAATATCTGACTTATTTCAGATGCAGCAGGAGTTGGAAAAAAACATAACTAGAGAACTAGAAGAAGGTATGTTGCCAAAATATATGACTTAAATTTAGAT-TAACTGATTTCTGAAATAAACAATAAATAGCAAATGGCATCCCTTTTT-ATTGTTTGGTAAATAGATACTATGTTA---AAT-
i otoGar3.GL873538             C 0 I 1
s canFam3.chr2                  79174039 424 -  85426708 ct-tccagaaattTTGTATATTCAGTTTGATCAA-TATTAATTGTACTTTTTATT--ATTCCTCTAAATA--------G-------CATTACAT--GTCTCT---TCTCAGT------TATCCAGA------TTAAAATAAGTAGGGA-TTTATTTTATTTATGTGATTATCTTTCT---ATTTAAGCAATCTG-TAACT----TTTACTCTCTAAAAGTATTATTTCCAGACCACATTTC-ATAAGCAAAATATAATTCCTACAATAATA----TCTCTTGTTTAACTTGCACATTATA-AGTA--ATATTTGACATTTCAGATGCAGCAGATGTTGGAAGAAAATATAACTAGAGAACTAAAAGAAGGTATGTTGCCAAATTTACGAATTTAGATAGTCAT-----TAATTTCTGAAATAAACTACAAATAGTAAATGGCATCCCTTTCC-ATTATTTAGGTAATAGGTTCTATGTTA---AAA-
i canFam3.chr2                 I 8324 C 0
s dasNov3.JH570393               1797761 446 -   2296528 CC-TTCTGAAATGCTGTGTGTTCAG-CAGACCAATTATTAATTGTA-CTTTTATCAAATTAATCTAACTACATTTTATA-------TATTATATATACGTATACCCTTCTAT------TATCTAAAA-----TTAAAATAAG----AATTTTATTT-------GTCATTATTTTTCT---TTTTAAGCAATTCC-CAAATTAGATCATGTCTCTAAAATTGCTATTTAAAGACCACATTTT-ATAAGATATATATCATTCTTACTATATTGTCTCTCTCTTATTTAACTTAAATATCATA-AATAATATTTGACTTATTACAGATGCAGCAGGAGTTGGAAAAAAATATAACTAGAGAACTAGAGGAAGGTATGTTGATAAAACTTATAAATTAAATTTAGATATCACTAATTTCTGAAATAAACTGTAAATAGTAAATGGAATTCTCTTTCTATTATTTGGAAATTAGACACAATGTTA---AACA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64673648 3572 -  72162052 I
e manLeu1.NW_012105442v1         1541119 790 -   1547936 I

a score=2454169.000000
s hg38.chr14_GL000009v2_random     54962 290 +    201709 TT-T-TTTCTTACA---------------------------CACATCTAATGAAAGATGTGAAAACAAAAACTTTCACAGAGAAGACTGCACTTATGCACCATAAATTCATCATGTTCCAAAGCTTAAACA-GTTCCCAAGAAGTCTGTGCA---TCT-CTTCT--TCACTGGTTCTACACTTTCTTAAGTTTTGCCATCCTCATGGAACTGTCAGCCAGCACACTGAAACGATTCTCAGAAAACAAAAGCATCATCAAGTTCTCAGGGTTTCGGTAGAGATTGAAGGCCAACAGACCTAAGACTCAT-TCAGAAATA------------CTTAGCTGA
s panTro5.chr9                  41734531 291 + 116767853 TTCT-TTTCTTACA---------------------------CACATCTAATGAAAGATGTGAAAACAAAAACTTTCACAGAGAAGACTGTACTTATGCACCATAAATTCATCATGTTCCAAAGCTTAAACA-ATTCCAAAGAAGTCTGTGCA---TCT-CTTTT--TCACTGGCTCTACACTTTCTTAAGTTTTGCCATCCTCATGGAACTGTCAGCCAGCACACTGAAACGATTCTCAGAAAACAAAAGTATCATCAAGTTCTCAGGGTTTCGGTAGAGATTGAAGGCCAACAGACCTAAGACTCAT-TCAGAAATA------------CTTAGCTGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96084207 291 - 114479721 TTCT-TTTCTTACA---------------------------CACATCTAATGAAAGATGTGAAAACAAAAACTTTCACAGAGAAGACTGTACTTATGCACCATAAATTCATCATGTTCCAAAGCTTAAACA-ATTCCCAAGAAGTCTGTGCA---TCT-CTTTT--TCACTGGCTCTACACTTTCTTAAGTTTTGCCATCCTCATGGAACTGTCAGCCAGCACACTGAAACGATTCTCAGAAAACAAAAGTATCATCAAGTTCTCAGGGTTTCAGTAGAGATTGAAGGCCAACAGACCTAAGACTCAT-TCAGAAATA------------CTTAGCTGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           20801 289 +     53730 TT-T-TTTCTTACA---------------------------CACATCTAATGAAAGATGTGAAAACAAAAACTTTCACAGAGAAGACTGTACTTATGCACCATAAATTCATCATGTTCTGTAGCTTAAAAA-ATTCCCAAGAAGTCGGTGCA---TCT-CTTTT--TCACTGGCTCTACACTTTCTTAAGTTTTGCCATCCTCATGGAACTGTCAGCCAGCACACTGAAAC-ATTCTCAGAAAACACAGGCATCATCAAGTTCTCAGGGTTTTGGTAGAAATTGAAGGCCAACAGACCTCAGACTCAT-TCAGAAATG------------CTTAGTTGA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40852044 290 + 122973662 TT-T-TTTCTTACA---------------------------CACATCTAATGAAAGATGTGAAAACGAAAACTTTCACAGAGAAGACTTTGCTTATGCACCATAAATTCATCACGTTCCATAGCTTAAAAA-ATTCCCAAGAAGTCTATGCA---TCT-CTTTT--TCACTGGCTCTACAATTTCTTCATTTTTGCCATCCTCATGGAACTGTCAGCCAGCACACTGAAACGATTCTCAGAAAACAAAGCCATCATCAAGTTCTCAGGGTTTTGGTAGAGACTGAAGGCCAACAGACTTCAGACTCAT-TCAGAAATC------------CTTAGCTGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   545773 290 - 111343173 CT-T-TTTCTTACA---------------------------CACATCTAATGAAAGATGTGAAAATAAAAACTTTCACAGTGAAGAGTATACTTATGCACTGTTAATTCATCATGTTACATACCTTAAAAA-ATTCCCAAGAAGTGTATCCA---TCT-CTTTT--TCACTGGCTCTACAATTTCTTCACTTTTGCCATCCTCATGGAACTGTCAGCCAGCACACCGAAATGATTCTCAGAAAACAAAGGCATCGTCAGGTTCTCAGGGTTTTGGTACAGACTGAAGGCCAACAGACCTCAGACTCAC-TTAGAAATA------------CTTAGCTGA
i rheMac8.chr15                I 2 C 0
s macFas5.chr13                111137825 290 - 111193037 TT-T-TCTCTTATG---------------------------CACATCTAATGAAAGATATGAAAACAAAAACTTCCACAGAGAAGACTGTCCTTGTGCACCATAAATTCATCACATCCCATAGCTTCAAAA-ATTCCCAAGAAGTCTATGCA---TCT-CTTTT--TCACTGGCTCTACACTTTCTTAAGTTTTTCCATCCTCATGGAACTGTCAGCCAGCACCCTGAAACGATTCTCAGAAAACAAAGGCATCATCAAGTTCTCAGGGTTTTGGTAGAGATTGAAGGCCAACAGATGTCAAATTCAT-TCAGAAATA------------CTTAGCTGA
i macFas5.chr13                I 2 C 0
s macNem1.NW_012012823v1          393389 303 +    434444 tt-t-tttgttttg--------------tttttttgttAGACACATCTAATGAAAGATGTGAAAACAAAAACTTTCACGGAGAAGACTGTACTTATTCACCATACATTTATCATGTTCCATAGCTTAAAAA-ATTCCAAAGAAGTCTATGCA---TCT-CTTTT--TCACTGGCTCTACAATTTCTTCAATCTTGCCATCCTCATGGAACTGTCAGCCTGCACACTGAAACAGTTCTCAGAAAACAAAGTCATCATCAAGTTCTCAGGATTTTGATAGAGATTGAAGGCCAACAGACCTCAGACTCAT-TTCAAAATC------------CTTAGCTGA
i macNem1.NW_012012823v1       I 2 C 0
s cerAty1.NW_012002921v1          432252 317 -    438202 tt-t-tttttgttttttttgttttgttttttttttgttAGACACATCTAATGAAAGATGTGAAAACAAAAACTTTCACAGAGAAGACTGTACTTATGCACCATAAATTTATCATGTTCCATAGCTTAAAAA-ATTCCAAAGAAGTCTATGCA---TCT-CTTTT--TCACTGGCTCTACACTTTCTTAAGTTTTTCCATCCTCATGGAACTGTCAGCCTGCACACTGAAACAGTTCTCAGAAAACAAAGTCATCATCAAGTTCTCAGGATTTTGATAGAGATTGAAGGCCAACAGACCTCAGACTCAT-TTCAAAATC------------CTTAGCTGA
i cerAty1.NW_012002921v1       I 2 C 0
s chlSab2.chr2                  66481759 297 +  90373283 TT-T-TTGTGTGTG--------------------TGTTAGACACATCTAATGAAAGATCTGAAAACAAAAACTTTCACAGAGAAGACTGTACTTATGCACCATAAATTTATCATGTTCCATAGCTTAAAAA-ATTCCCAAGAAGTCTATGCA---TTT-CTTTT--TCACTGGCTCTACAATTTCTTCACTCTTGCCGTCCTCATGGAACTGTCAGCCTGCACACTGAAACAATTCTCAGAAAACAAACACATCATCAAGTTCTCAGGATTTTGATAGAGATTGAAGGCCAACAGACCTCAGACTCAT-TTCAAAATC------------CTTAGCTGA
i chlSab2.chr2                 I 2 C 0
s manLeu1.NW_012105442v1         1541909 290 -   1547936 tt-t-tt---------------------------tgttAGACACATCTAATGAAAGATGTGAAAACAAAAACTTTCACAGAGAAGACTGTACTTATGCACCATAAATTTATCATGTTCCATAGCTTAAAAA-ATTCCAAAGAAGTCTATGCA---TCT-CTTTT--TCACTGACTCTACAATTTCTTCAGTCTTGCCATCCTCATGGAACTGTCAGCCAGCACCCTGAAACGATTCTCAGAAAACAAAGGCATCATCAAGTTCTCAGGGTTTTGGTAGAGATTGAAGGCCAACAGACCTCAGACTCAT-TTCAAAATC------------CTTAGCTGA
i manLeu1.NW_012105442v1       I 790 C 0
s colAng1.NW_012121088v1           50177 290 +    168452 TT-T-TTTCTTACA---------------------------CACATCTAATGAAAGATGTGAAAACAAAAACTTTCACAGAGAAGACTGTCCTTGTGCACCATAAATTCATCACATCCCATAGCTTAAAAA-ATTCACAAGAAGTCTATGCA---TCT-CTTTT--TCACTGGCTCTACGCTTTCTTAAGTTTTGCCATCCTCATGGAACTGTCAGCCAGCACCCTGAAACGATTCTCAGAAAACAAAGGCATCATCAAGTTCTCAGGGTTTTGGTAGAGATTGAAGGCCAACAGACCTCAGACTCAT-TCAGAAATA------------CTTAGCTGA
i colAng1.NW_012121088v1       I 2 C 0
s calJac3.chr1                 130416419 288 - 210400635 TT-TCTTTCTTATG---------------------------T----CTAATGAAAGATGTGAAAACAAAATCTTTCACCATGAGAAGTACACTTATGCCCCATTAATTCATCATGTTTCATAGCTTTAAAA-GTTCCCAAGAAGTCTATGCA---TTTCTTTTT--TTTCTGGCTCTATACTGTTTTCACTTTTGCCATCCTCATGGAACTGTCACCCAGCACACTGAAAGGATTCACAGAAAATAGAGGCATCATTTGCTTCTCAGGGTTGTGGTAGAGATTGAAGGCCAACAGACCTCAGACTCAT-TTAGAAATA------------CTTAGCTAA
i calJac3.chr1                 I 1 C 0
s cebCap1.NW_016107851v1         1092091 283 +   1314817 TT-T-TTTCTTACA---------------------------CACAGCTAATGAAAGACGTGAAAACACAAACACTCACGATGACGAGTATACTTATGCACCATTTATTCATCATGGTCCACAGC-TTAAAA-ATTCCCAAGAAGCCTATGCA---T---CGTTT--TACCTGACTCTGCACATTCTTCACTTTTACCCTCCTTATGGAACTGTGAGCCAGCACACTGAAGCTATTCTCAGAAAACAAAGGCATCCTCAACTTATCTGGGTTTTGGTAGCGATTGAAGGCCAACAGACCCCAGACTCAT-TTAGAAA----------------CAGTTAA
i cebCap1.NW_016107851v1       I 1 C 0
s aotNan1.NW_018488791v1         6447841 283 -   6597006 TG-T-TTTCTTACA---------------------------CACATCTAATGAACGGTGTGAAAACATAGACACTCATGATGACGAGTCTACTTATGCACCATTTATTCATCATGGTCCATAGC-TTAAAA-ATTCCTAAGAAGTCTATGCA---T---CTTTT--TATCTGACTCTGCACTTTCTTCACTTTTGCCCTCCTTATGGAACTGTGAGCCAGCACACTGAACCTATTCTCAGAAAACAAAGGCATCATCAACTTATCTGGGTTTTGGTAGAGATTAAAGGCCAACAGACCCCAGACTCAC-TTAGAAA----------------CAGTTAA
i aotNan1.NW_018488791v1       I 1 C 0
s otoGar3.GL873538              19695663 273 -  27850971 ---------------------------------------------TTTTTTCAGGGATGTGAAAACATAAACATTCATCATGAAGAGTATACTTATGCCTCATTAAT-----------CACAGTTTAAAAAGAATCTCAAAAAGTCTATGTA---TCT-CTTTA--TTTCTGTCTCTATACTATCTTCACTCCTGCCATCGCTATGGTACTGTCAGACAGCACACCAAAACCGTTCTCAGAAAACAAAG---CCATCAACTTCTCAGGTTTAGAGCAGTGATTTAAAGCCAGGAGACTCCAGACTTAT-CAAGCAATAcagtagaacctccatagctga
i otoGar3.GL873538             I 1 I 131
s canFam3.chr2                  79174463 259 -  85426708 ------TTTTTGTA---------------------------TATATCTAATAAAAAATGT-CAAACATGAA----CATAATGAATAACAGATTTATTCTTCATTTGGTCATCATGTTTCACACCTTTTTAA-AAATCTGCAAAGTCTATGTG---CCT-GTTCTCACTTTTGGCTGTAATCTTCCTTCACTTGTGCCATCGCTATGGAACTGTCAATCTG----------------------AATGTGGGTGTTCTCAAATTCTT--GTTTCTGCTAGTGGTAGAAGACCAA-AAAGACCAGACTTGTCTTAGTAATA------------CTTAATTAA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1798207 285 -   2296528 GT-T-TTTCTTATA---------------------------TACCTCTAAGGAAAGACATTAAAGCATAAACATTTATGATGAAGAATATAATTATTCTTCTTTAAC---TCATATTCCAAATCTTTTAAA-CATCTCAAAAAGTCTCTGCACACTTT-TTTTC--TTTCTGGCTGTAGCCTTCTTTCACTTCTGCCAT--GCAGGGAACTGTCAACCTGCCCACTGAAACTCTTCTCAGAAAACA-AGGTATCAGCCACTTCT-ATCTTTACCGTAGTGACAGAAGGCAAAAAAAACCCAGAC-CAT-CTCATGATA------------CTTGGTCAA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=5464302.000000
s hg38.chr14_GL000009v2_random     55252 613 +    201709  
s panTro5.chr9                  41734822 613 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96084498 613 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           21090 612 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40852334 611 + 122973662  
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   546063 615 - 111343173  
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111138115 611 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          393692 607 +    434444  
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          432569 607 -    438202  
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66482056 602 +  90373283  
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1542199 607 -   1547936  
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           50467 600 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130416707 617 - 210400635  
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1092374 619 +   1314817  
i cebCap1.NW_016107851v1       C 0 I 18
s aotNan1.NW_018488791v1         6448124 616 -   6597006  
i aotNan1.NW_018488791v1       C 0 I 18
s otoGar3.GL873538              19696067 597 -  27850971  
i otoGar3.GL873538             I 131 I 9
s canFam3.chr2                  79174722 456 -  85426708  
i canFam3.chr2                 C 0 I 12
s dasNov3.JH570393               1798492 610 -   2296528  
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=65988.000000
s hg38.chr14_GL000009v2_random     55865 10 +    201709 ------------ATTATT--AAAT
s panTro5.chr9                  41735435 10 + 116767853 ------------ATTATT--AAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96085111 10 - 114479721 ------------attatt--aaat
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           21702  9 +     53730 ------------ATTATT---AAT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40852945 10 + 122973662 ------------ATTATC--TAAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   546678 10 - 111343173 ------------ATTATT--TAAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111138726 10 - 111193037 ------------ATTATT--TAAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394299 10 +    434444 ------------ATTATT--TAAT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433176 10 -    438202 ------------ATTATT--TAAT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66482658 10 +  90373283 ------------ATTATT--TAAT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1542806 10 -   1547936 ------------ATTATT--TAAT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51067 10 +    168452 ------------ATTATT--TAAT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417324 10 - 210400635 ------------ATTATT--TAAT
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19696673 12 -  27850971 ------------ATTATTTTTAAT
i otoGar3.GL873538             I 9 C 0
s canFam3.chr2                  79175190 10 -  85426708 ------------TATATT--TAAT
i canFam3.chr2                 I 12 C 0
s dasNov3.JH570393               1799102 22 -   2296528 ATATGGGTAAATTATATT--GAAT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6448740 18 -   6597006 I
e cebCap1.NW_016107851v1         1092993 18 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=255593.000000
s hg38.chr14_GL000009v2_random     55875 25 +    201709 AGTA-------ATTTTGTATTGTA-AATGTACA
s panTro5.chr9                  41735445 25 + 116767853 AGTA-------ATTTTGTATTGTA-AATGTACA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96085121 25 - 114479721 agta-------attttgtattgta-aatgtaCA
i panPan2.chr13                C 0 I 3784
s gorGor5.CYUI01002030v1           21711 25 +     53730 AGTA-------ATTTTGTATTGTA-AATGTACA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40852955 25 + 122973662 AGTA-------ATTTTGTATTGTA-AATGTACA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   546688 25 - 111343173 AGTA-------GTTTTGTATTATA-ATTGTACA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111138736 25 - 111193037 AATA-------ATTTTGTATTGTA-AATGTACA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394309 25 +    434444 AGTA-------ATTTTGTATTGTA-AATGTACA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433186 25 -    438202 AGTA-------ATTTTGTATTGTA-AATGTACA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66482668 25 +  90373283 AGTG-------ATTTTGTATTGTA-AATGTACA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1542816 25 -   1547936 AGTA-------ATTTTGTATTGTA-AATGTACA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51077 25 +    168452 AGTA-------ATTTTGTATTGTA-AATGTACA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417334 24 - 210400635 AGTA-------ATTTCGTA-TGTA-ATCATACA
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1093011 25 +   1314817 AGTA-------ATTTTGTATTGAA-ATTGTATA
i cebCap1.NW_016107851v1       I 18 C 0
s aotNan1.NW_018488791v1         6448758 24 -   6597006 AGTA-------ATTTTGTA-TGAA-ATTGTATA
i aotNan1.NW_018488791v1       I 18 C 0
s otoGar3.GL873538              19696685 25 -  27850971 AGTA-------ATTTTGTATCATA-GTTGTACA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79175200 26 -  85426708 AGTA-------ATCTTGTATTTTATATTGTAGT
i canFam3.chr2                 C 0 I 5
s dasNov3.JH570393               1799124 32 -   2296528 AGTAATCTCATATTTTGTACTGTA-GTTGTACA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=1062700.000000
s hg38.chr14_GL000009v2_random     55900 114 +    201709 TACATATTTCTCATTCTTATTAACTCTGATAAAGTTCTCAAGTCTTTAGTTTTTAA---ACTCACTCTTAG--TTA--ACT--GAAGTGTTTTAGGTAAAGAACAAAATTCTTTA-TTTTTCTT
s panTro5.chr9                  41735470 114 + 116767853 TACATAATTCTCATTCTTATTATCTCTGATAAAGTTCTCAAGTCTTTAGTTTTTAA---ACTCACACTTAG--TTA--ACT--GAAGTGTTTTAGGTAAAGAACATAATTCTTTA-TTTTTCTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96088930 114 - 114479721 TACATATTTTTCATTCTTATTAACTCTGATAAAGTTCTCAACTCTTTAGTTTTTAA---ACGCACACTTAG--TTA--ACT--GAAGTGTTTTAGGTAACGAACATAATTCTTTA-TTTTTCTT
i panPan2.chr13                I 3784 C 0
s gorGor5.CYUI01002030v1           21736 113 +     53730 TACATATTTTTCATACTTATTAACTCTGATAAAGTTCACAACTCTTTAGTTTTTAA---ACTCACACTTAG--TTA--ACT--GAAGTGTTTTAGGTAAAGGACATAATTCTTT--TTTTTCTT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40852980 107 + 122973662 TACATATTTCTCATTCTTATTAACTCTGATAAAGTTCTCAACTCTTTAGTTTTTAA---ACTCAC----AA--TTA--ACT--GAAGAGTTTTAGGTAAAGAACATAAATTT----TTTTTCTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   546713 115 - 111343173 TACATATTCCTCATTCTTATTAACGCTGATAACATTCTCAATGCTTTACATTTTAA---AGTTACACTTGG--TTA--ACT--GAAATGTTTTAGGTAAAGAACATAATTCTTTCTTTTTTCTT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111138761 114 - 111193037 TACATATTTCTCATTCTTATTAACTCTGATAAAGTTCTCAACTCTTTAGTTTTTAA---AATCACACTGAG--CTA--ACC--AAAGTGTTTTAGGTAAAGAACATAATTCTTTG-TTTTTCTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394334 114 +    434444 TACATATTTCTCATTCTTATTAACTCTGATAAAGTTCTCAGTTCTTTAGTTTTCTA---ACTCACACTTAT--TTA--ACT--GAAGTGTTCTAGGTAAAGAACAAAATTCTTTC-TTTTTCTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433211 114 -    438202 TACATATTTCTCATTCTTATTAACTCTGATAAAGTTCTCAGCTCTTTAGTTTTCAA---ACTCACACTTAG--TTA--ACT--GAAGTGTTCTAGGTAAAGAACAAAATTCTTTC-TTTTTCTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66482693 114 +  90373283 TACATATTTCTCATTCTTATTAACTCTGATAAAGTTCTCAACTCTTTAGTTTTTAA---AATCACACTGAG--TTA--ACC--GAAGTGTTTTAGGTAAAGAACATAATTATTTG-TTTTTCTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1542841 114 -   1547936 TACATATTTCTCATTCTTATTAACTCTGATAAAGTTCTCAGCTCTTTAGTTTTCAA---ACTCACACTTAG--TTA--ACT--GAAGTGTTCTAGGTAAAGAACAAAATTCTTTC-TTTTTCTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51102 114 +    168452 TACATATTTCTCATTCTTATTAACTCTGATAAAGTTCTCAACTCTTTAGTTTTTAA---AATCACACTGAG--TTA--ACC--GAAGTGTTTTAGGTAAAGAACATAATTCTTTG-TTTTTCTT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417358 114 - 210400635 TACATATTTCTCATTCTTACTAACTCTGATAAAGTTCTCAACTCTTTAGTTTTTAA---ACTCACACTTAG--TTA--ACT--GAAATGTTTTAGATAAAGAACGTAACTCTTTA-TTTATCTT
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1093036 109 +   1314817 TACATATTTCTCATTCTT----ACTCTGGTAGAGTTCTCAACTC-TTATTTTTAAA---ACTTACAATTAG--TTA--ACT--AAAATGTTTTAGTTAAGGAACAGAATTCTTTC-TTTTTCTT
i cebCap1.NW_016107851v1       C 0 I 342
s aotNan1.NW_018488791v1         6448782 113 -   6597006 TACATATTTCTCATTCTTACTAACTCTGATAGAGTTCTCAACTC-TTATTTTTAAA---ACTTACATTTAG--TTA--ACT--AAAATGTTTTAGTTAAGGAACATAATTCTTTC-TTTTTCTT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19696710 119 -  27850971 TACATATTTTTCATTCTTATTAATACTGATAAAATTTTCAACTCTTTTTTTCTTAACTGACTTTCACTTAG--TGATTAAC--AAAATGCCTTAGATAAAGAATATAATTCTTTC-TTTTTGTT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79175231 106 -  85426708 TAGATATTTTTCATTTTT---AACATTCATAAGATTC-CAACT------TTTTTAT---ACTAACTTGTGG--TTA--ACTACAAAGTATTTCAGATAAAGAATATAAATCTTCC-TTTTTCTT
i canFam3.chr2                 I 5 C 0
s dasNov3.JH570393               1799156 113 -   2296528 TAC-TTTTTTTTATTCTTATTAACACTAATAAAGTTTT----TTCTTTGTTTAGTG---ACTTCTACTTAGTTTTA--ACTGTGAAGTATTTTGAATTAAGGTTTTAATTCTTTC-TTTTTCTT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=38580.000000
s hg38.chr14_GL000009v2_random     56014 4 +    201709 TCCA
s panTro5.chr9                  41735584 4 + 116767853 TCCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089044 4 - 114479721 TCCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           21849 4 +     53730 TCTA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853087 4 + 122973662 TCCA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   546828 4 - 111343173 TCCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111138875 4 - 111193037 TCCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394448 4 +    434444 TCCA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433325 4 -    438202 TCCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66482807 4 +  90373283 TCCA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1542955 4 -   1547936 TCCA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51216 4 +    168452 TCCG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417472 4 - 210400635 TCTA
i calJac3.chr1                 C 0 C 0
s aotNan1.NW_018488791v1         6448895 4 -   6597006 CCCA
i aotNan1.NW_018488791v1       C 0 I 280
s otoGar3.GL873538              19696829 4 -  27850971 TTTA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79175337 4 -  85426708 TTCA
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1799269 4 -   2296528 TCCA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e cebCap1.NW_016107851v1         1093145 342 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=543022.000000
s hg38.chr14_GL000009v2_random     56018 68 +    201709 GCTGTTGCTGTATTGGACACTTGCTCCCATCTACTTTCTTCTCTAGAATCCACGGGTAAGCCACATCT
s panTro5.chr9                  41735588 68 + 116767853 GCTGTTGCTGTATTGGACACTTGCTGCCATCTACTTTCTTCTCTAGAATCCACTGGTAAGTCACATCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089048 68 - 114479721 GCTGTTGCTGTGTTGGACACTTGCTCCCATCTACTTTCTTCTCTAGAATCCACTGGTAAGCCATATCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           21853 68 +     53730 GCTGTTGCTGTGTTGGACACTTGCTCCCATCTATTTTCTTCTCTAGAATCCACTGGTAAGCCACATCT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853091 68 + 122973662 GCTGTTGCTGTGTTGGACACTAGTTCCCATCTACTTTCTTCTCTAGAATCCACTGGAAAGCCACATCT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   546832 68 - 111343173 GCTTTTGATGTGTTGGGCACTTGCTCCGGTCTACTTTCTTCTCTAGAATCCACTAGTAAGCCACATCT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111138879 68 - 111193037 GCTGTTGCTGTGTTGGACACTTTCACCCGTCTACTTTCTTCTGCAGAATCCACTGGTAAGCCACGTCT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394452 68 +    434444 GCTGTTGCTGTGTTGGACACTTGCTCCCGTCTACTTTCTTCTCTAGAATCCACTGGTAAGCCACATCT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433329 68 -    438202 GCTGTTGCTGTGTTGGACACTTGCTCCCGTCTACTTTCTTCTCTAGAATCCACTGGTAAGCCACATCT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66482811 68 +  90373283 GCTGTTGCTGTGTTGGACACTTGCTCCCGTCTACTTTCTTCTCTAGAATCCACTGGTAAGCCACATCT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1542959 68 -   1547936 GCTGTTGCTGTGTTGGACACTTGCTCCCGTCTACTTTCTTCTCTAGAATCCACTGGTAAGCCACATCT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51220 68 +    168452 GCTGTTGCTGTGTTGGACACTTGCACTCATCTACTTTCTTCTACGGAATCCACTGGTAAGCCACATCT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417476 68 - 210400635 GCTGTTGCTGTGATGGACACTTGCTCCCGTCTACTTCCTTATCTATTATCCACTAGTTAACCGCATCT
i calJac3.chr1                 C 0 C 0
s otoGar3.GL873538              19696833 68 -  27850971 GCCGCTGCTGAATTGGAAACTGAATCCTGTATAGCTTCTCCTGTGGGATCTACTGATGAATCAAATCT
i otoGar3.GL873538             C 0 I 23
s canFam3.chr2                  79175341 68 -  85426708 GCTGCTGGTGAACTTGAATCAGGATCCTGTAGATCCTTTTCTTTAGGATCTACTGATGAATCAAATCT
i canFam3.chr2                 C 0 I 23
s dasNov3.JH570393               1799273 68 -   2296528 GCTGCTGCTGAGTTTGAATCTGGATCCTGTAGAGCTTCTCCTCTAGGATCTACTGATGAGTCAAATCT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6448899 280 -   6597006 I
e cebCap1.NW_016107851v1         1093145 342 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=698070.000000
s hg38.chr14_GL000009v2_random     56086  88 +    201709 -AATGAAGA----------------------GAATATTT-AACCATAAAGTCTTAAGGAAAAATTCTATGATGATTTAAAAGATT----ATAAAACTTTA-TTACTGGGCTATTTAC
s panTro5.chr9                  41735656  88 + 116767853 -AATGAAGA----------------------GAATATTT-AACCATAAAGTCTTAAGGAAAAATTGTATGATGATTTAAAAGATT----ATAAAACTTTA-TTACTGGGCTATTTAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089116  85 - 114479721 -AACAAAGA----------------------GAATATTT-AACCATAAAGTCTTAAGGAAAAATTGT---ATGATTTAAAGGATT----ATAAAACTTTA-TTACTGGGCTATTTAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           21921  84 +     53730 -AATGAAGA-----------------------AATATTT-AACCATAAAGTTTTAAGGAAAAATTGT---ATGATTTAAAAGATT----ATAAAACTTTA-TTACTGGGCTATTTAC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853159  85 + 122973662 -AATGAAGA----------------------GAATATTT-AACCATAAAGTCTTAAGGAAAAATCGT---ATGATTTAAAAGATT----ATAAAACTTTA-TTACTGGGCTATTTAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   546900  85 - 111343173 -AATGAAGA----------------------GGATATTT-AACCAGAAAATCTTAAAGAAAAGTTGT---GTGATTTAAAAGATC----ATAAAACTTTA-TCACTGGGCCATTTAC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111138947  85 - 111193037 -AATCAAGA----------------------GAATATTT-AACCATAAAATCATAAGGACAAATTTT---GTGATATAAAAGATT----ATAAAACTTTA-TTACTGGGCTATTTAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394520  85 +    434444 -AATGAAGA----------------------GAATATTT-AACCATGAAGTCTTAAGGAAAAACTGT---ACGATTTAAAAGATT----ATAAAACTTTA-TTACTGCGCTATTTAC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433397  85 -    438202 -AATGAAGA----------------------GAATATTT-AACCATGAAGTCTTAAGGAAAAACTGT---ACGATTTAAAAGATT----ATAAAACTTTA-TTACTGCGCTATTTAC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66482879  85 +  90373283 -AATGAAGA----------------------GAATATTT-AACCATGAAATCTTAAGGAAAAATTGT---ATGATTTAAAAGATT----ATAAAACTTTA-TTACTGGGCTATTTAC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543027  85 -   1547936 -AATGAAGA----------------------GAATATTT-AACCATGAAGTCTTAAGGAAAAACTGT---ACGATTTAAAAGATT----ATAAAACTTTA-TTACTGCGCTATTTAC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51288  85 +    168452 -AATCAAGA----------------------GAATATTT-AACCATAAAATCTTAAGGACAAATTTT---ATGATTTAAAAGATT----ATAAAAGTTTA-TTACTGGGCTATTTAC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417544  86 - 210400635 -AATGAAGA----------------------GAATATCTAAACCATAAAATCTTAAGGTAAAATTTT---ATGATTTAAAAGATC----ATAAAACTTTA-TTACTGGGCTATTTAC
i calJac3.chr1                 C 0 C 0
s aotNan1.NW_018488791v1         6449179  86 -   6597006 -AATGAAGA----------------------GAATGTCTAAATCATAAAATCTTAAGAAAAAATTTT---ATGACTTAAAAGATC----ATAACATTTTA-TTACTGAGCTGTTTAC
i aotNan1.NW_018488791v1       I 280 I 3
s otoGar3.GL873538              19696924  77 -  27850971 -CATCACGA----------------------GAATATGT-AC-----AGATTTTACAGAAAAATTAT---ATGCTCTGAAA---C----ATCAGATTTTA-TTACTGGTCTGTTTAT
i otoGar3.GL873538             I 23 I 3
s canFam3.chr2                  79175432  84 -  85426708 -CATCACAA----------------------GAATATGT-AG-----AGATTTTAAAGAAAAATTAT---ATGATCTGAAAGATCTATAATAAAAGTTTA-TTACCTAGATATTTAA
i canFam3.chr2                 I 23 I 4
s dasNov3.JH570393               1799341 105 -   2296528 AAATCAAGATCTAGTTTTGAAAACATCACAAGAATATGT-AC-----AGATTTTAAAGAAAAATTAT---ATGATCTGAAAGATA---AATAATAATTTGTTTACTGGGCGGTTTAT
i dasNov3.JH570393             C 0 I 3
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e cebCap1.NW_016107851v1         1093145 342 +   1314817 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=325062.000000
s hg38.chr14_GL000009v2_random     56174 36 +    201709 A---CA-TTTTAATTGTTTCTCATAAAATATATAACATTC
s panTro5.chr9                  41735744 36 + 116767853 A---CA-TTTTAATTGTTTCTCATAAAATATATAGCATTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089201 36 - 114479721 A---CA-TTTTAATTGTTTCTCAAAAAATATATAACATTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22005 36 +     53730 A---CA-TTTTAATTGTTTCTCATAAAATATATAACATTA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853244 39 + 122973662 ACAGCA-TTTTAATCGTTTCTCATAAAATATATAACATTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   546985 34 - 111343173 ATGAAA-TTTTAATTGTTTTTCAT-AAATATATAAC----
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139032 39 - 111193037 ACAACA-TTTTAATTGTTTCTCATAAAATATACAACATCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394605 40 +    434444 AGAACATTTTTAATTGTTTCTCATAAAATATTTAACATTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433482 39 -    438202 AGAACA-TTTTAATTGTTTCTCATAAAATATTTAACATTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66482964 39 +  90373283 AGAACA-TTTTAATTGTTTCTCATAAAATATTTAACATTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543112 39 -   1547936 AGAACA-TTTTAATTGTTTCTCATAAAATATTTAACATTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51373 39 +    168452 ACAACA-TTTTAATTGTTTCTCATAAAATATACAACATCA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417630 36 - 210400635 ---ATA-TTTTAATTGTTTCTCATAAAATATATAACATCA
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1093487 36 +   1314817 ---ACA-TTTTAATTATTTCTAATAAGACATATAACATCA
i cebCap1.NW_016107851v1       I 342 C 0
s aotNan1.NW_018488791v1         6449268 36 -   6597006 ---ACA-TTTTAATTGTTTCTAATAAGACATAAAACATCA
i aotNan1.NW_018488791v1       I 3 C 0
s otoGar3.GL873538              19697004 36 -  27850971 ---ACA-TTTTAATTGTTTTTCATTTAATATATGACAAAG
i otoGar3.GL873538             I 3 C 0
s canFam3.chr2                  79175520 36 -  85426708 ---ACA-TTTTAATTGTTTCCCAGTAAATATCTGATGTAC
i canFam3.chr2                 I 4 I 2
s dasNov3.JH570393               1799449 35 -   2296528 ---ACA-TTTTAAT-GTTTCCCATTAAATATATAACGTGA
i dasNov3.JH570393             I 3 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64673648 3572 -  72162052 I

a score=627985.000000
s hg38.chr14_GL000009v2_random     56210 64 +    201709 CAATATTTACTGAA--GTAGGATA-TTTTTGTA-TCATATGTATGATTATAATT--TATAGGATATTTTA
s panTro5.chr9                  41735780 64 + 116767853 CAATATTTACTGAA--GTAGGATA-TTTTTGTA-TCATATGTATGATGATAATT--TATAGGGTATTTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089237 64 - 114479721 CAACATTTACTGAA--GTAGGATA-TTTTTGTA-TCATATGTATGATGATAATT--TATAGGGTATTTTA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22041 64 +     53730 CAATATTTACTGAA--GTAGGATA-TTTTTGTA-TCATATGTACGATGATAATT--TATAGGGTATTTTA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853283 64 + 122973662 CAATATTTACTGAA--GTAGGATA-TTTTTGTA-TCATACGTATGATGATAATT--TATAGGGTATTTTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547019 43 - 111343173 -----------------------A-TTTTCATA-TCATATGTATGATGAAAATT--TTTATGGTATTTTA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139071 64 - 111193037 CAATCTTTACCGAA--GTAGGATA-TTTTTGTA-TCATATGTATGAAGATAACT--TGTAGGGTATTTTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394645 66 +    434444 CAATATTTACTAAAGTGTAGGATA-TTTTTGTA-TCATATGTATGATGATAATT--TATAGGGTATTTTA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433521 66 -    438202 CAATATTTACTGAAGTGTAGGATA-TTTTTGTA-TCATATGTATGATGATAATT--TATAGGGTATTTTA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483003 66 +  90373283 CAATATTTACTGAAGTGTAGGATA-TTTTTGTA-TCATATGTATGATGATAATT--TATAGGGTATTTTA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543151 66 -   1547936 CAATATTTACTGAAGTGTAGGATA-TTTTTGTA-TCATATGTATGATGATAATT--TATAGGGTATTTTA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51412 64 +    168452 CATTCTTTACTGAA--GTAGGATA-TTTTTGTA-TCATATGTATGAAGATAATT--TGTAGGGTATTTTA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417666 64 - 210400635 TAATCTTTGTTAAA--GTAGAATA-TTTTCATA-TCACATGTATGATGCATATT--TACATGGTATTTTA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64677220 64 -  72162052 CAATCTTTACTAAC--GAAGAAGA-TATTTGTA-TCATATGTAGGATGAAAATT--TATATGGTATTTTA
i saiBol1.JH378105             I 3572 C 0
s cebCap1.NW_016107851v1         1093523 64 +   1314817 CAATCTTTACTAAA--GAAGAAGA-TATTTGTA-TCATATGTAAGATGAAAATT--TATATGGTATTTTA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6449304 64 -   6597006 CAATCTTTACTAAA--GAAGAAGA-TATTTGTA-TCATATGTAAGATGAAAatt--tatatggtatttta
i aotNan1.NW_018488791v1       C 0 I 2235
s otoGar3.GL873538              19697040 65 -  27850971 --GAAAATATTAAA--GGAAAATA-TTTTTGTATTTATATGTCTGATGAAAATTTATATATAGTATTTTA
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79175558 63 -  85426708 AAATCTTTATTAAA--GGAAAATGTTTTTTGTA-TCGTGTGTA--ATAAAAGTT--TATATACTATTTTA
i canFam3.chr2                 I 2 C 0
s dasNov3.JH570393               1799484 59 -   2296528 ----AAATATTATA--GGAAAATA-TTTTTGTA-TCATATGTATGATAA-AATT--TATATATTACTTTA
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I

a score=83745.000000
s hg38.chr14_GL000009v2_random     56274 15 +    201709 AATGA----TGTTTTTTGG
s panTro5.chr9                  41735844 15 + 116767853 AATAA----TGTTTTTTAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089301 15 - 114479721 AATGA----TGTTTTTTAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22105 15 +     53730 AATGA----TGTTTTTTAG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853347 15 + 122973662 AATGA----TGTTTTTTAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547062 15 - 111343173 AATGA----TGTTTCTTCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139135 15 - 111193037 AATGA----TGTTTTTCAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394711 15 +    434444 AATGA----TTTTTTTTAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433587 15 -    438202 AATGA----TTTTTTTTAG
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483069 17 +  90373283 AATGATA--TTTTTTTTAG
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543217 14 -   1547936 AATGA-----TTTTTTTAG
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51476 15 +    168452 AATGA----TGTCTTTCAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417730 15 - 210400635 AATGA----AGTTTTTTAG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64677284 14 -  72162052 AAT-A----ATCTTTTTAA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1093587 14 +   1314817 AAT-A----ATCTTTTTAA
i cebCap1.NW_016107851v1       C 0 C 0
s otoGar3.GL873538              19697105 12 -  27850971 ---AA----TGTTTCTTGT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79175621 13 -  85426708 ------AGCTGTTTCTTGG
i canFam3.chr2                 C 0 I 2
s dasNov3.JH570393               1799543 15 -   2296528 AACTG----TGTTTCTTTG
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6449368 2235 -   6597006 I

a score=116510.000000
s hg38.chr14_GL000009v2_random     56289 12 +    201709 CCTCCTTAAGTT
s panTro5.chr9                  41735859 12 + 116767853 CCTCCTTAAGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089316 12 - 114479721 CCTCCTTAAGTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22120 12 +     53730 CCACCTTAAGTT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853362 12 + 122973662 CCTCCTTAAGTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547077 12 - 111343173 CCTCCTTAAGTT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139150 12 - 111193037 TCTCCTTCAGTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394726 12 +    434444 CCTCCTTAAGTT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433602 12 -    438202 CCTCCTTAAGTT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483086 12 +  90373283 CCTCCTTAAGTT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543231 12 -   1547936 CCTCCTTAAGTT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51491 10 +    168452 TCTTCTTCAG--
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417745 12 - 210400635 CCTCTTAAAGTT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64677298 12 -  72162052 CCTCTTTAAGTT
i saiBol1.JH378105             C 0 I 12
s cebCap1.NW_016107851v1         1093601 12 +   1314817 CCTCTTTAAGTT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6451603 12 -   6597006 CCTCTTTAAGTT
i aotNan1.NW_018488791v1       I 2235 C 0
s otoGar3.GL873538              19697117 12 -  27850971 CCTCTTTAGCTG
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79175636 12 -  85426708 TCTAATTAACTT
i canFam3.chr2                 I 2 C 0
s dasNov3.JH570393               1799558 12 -   2296528 TGTCTGTAACTT
i dasNov3.JH570393             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I

a score=24208.000000
s hg38.chr14_GL000009v2_random     56301 2 +    201709 TT
s panTro5.chr9                  41735871 2 + 116767853 TT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089328 2 - 114479721 TT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22132 2 +     53730 TT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853374 2 + 122973662 TT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547089 2 - 111343173 TT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139162 2 - 111193037 TT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394738 2 +    434444 TT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433614 2 -    438202 TT
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483098 2 +  90373283 TT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543243 2 -   1547936 TT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51501 2 +    168452 TT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417757 2 - 210400635 TT
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1093613 2 +   1314817 TT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6451615 2 -   6597006 TT
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19697129 2 -  27850971 AT
i otoGar3.GL873538             C 0 C 0
s canFam3.chr2                  79175648 2 -  85426708 TT
i canFam3.chr2                 C 0 C 0
s dasNov3.JH570393               1799570 2 -   2296528 TT
i dasNov3.JH570393             C 0 N 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64677310 12 -  72162052 I

a score=910416.000000
s hg38.chr14_GL000009v2_random     56303 106 +    201709 AAGTGGATCTTGCAAATGAAAACCAGTATT-ATTGAGTTTGACATACTCAAATTGCCCAAATTTCAGCTGTTT-----------AAACAACCAAGTCATCATTGATACTTTAGTAAAG--
s panTro5.chr9                  41735873 106 + 116767853 AAGTGGATCTTGCAAATGAAAACCAGTATT-ATTGAGTTTGACATACTCAAATTGCCCAAATGTCAGCTATTT-----------AAACAACCAAGTCATCATTGATACTTTAGTAAAG--
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089330 106 - 114479721 AAGTGGATCTTGCAAATGAAAACCAGTATT-ATTGAGTTTGACATACTCAAATTGCCCAAATGTCAGCTATTT-----------AAACAACCAAGTCATCATTGATACTTTAGTAAAG--
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22134 106 +     53730 AAGTGGATCTTGCAAATGAAAACAAGTATT-ATTGAGTCTGATATACTCAAATTGCCCAAATATCAGCTGTTT-----------AAACAACCAAGTCATCATTGATACTTTAGTAAAG--
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853376 111 + 122973662 AAGTGGATCTTGCAAATGAAAACCAGTATT-ATTGAGTTTGACATACTCAAATTGCCCAAATGTCAGCTGTTTAAACAG---CCAAACAACCAAGTCATCATTGATACTTTAGTA-----
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547091 103 - 111343173 AAGTGGATCTTGCAAATGA--------TCC-ATTGAGTTTGGCATACTCAAATTGCCCAAATGTCAGTTGTTTAAACAG---CCAAACAACCAAGTCATCATTGATACTTTAGTA-----
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139164 111 - 111193037 AAGTGGATCTTGAAGATGAAAACCAGTATT-ATTGAGTTTGACATACTCAAATTGCCCAAATGCCAGCTATTTAAACAG---CCAAACAACCAAGTCATCATTGATTCTTTAGTA-----
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394740 111 +    434444 AAGTGGATCTTGCAAACAAAAACCATTTTT-ATTAAGTTTGACATACTCAAATTGCCCAAATGTCAGCTGTTTAAACAG---CCAAACAACCAAGTCATCATTGATACTTTAGTA-----
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433616 111 -    438202 AAGTGGATCTTGCAAACAAAAACCATTTTT-ATTAAGTTTGACATACTCAAATTGCCCAAATGCCAGCTGTTTAAACAG---CCAAACAACCAAGTCATCATTGATACTTTAGTA-----
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483100 108 +  90373283 AAGTGGATCTTGCAAACAAAAACCATTTTT-ATTAAGTTTGATGTACTCAAATTGCCCAAATGTCAGCTGTTTA---AG---CCAAACAACCAAGTCATCATTGATACTTTAGTA-----
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543245 111 -   1547936 AAGTGGATCTTGCAAACAAAAACCATTTTT-ATTAAGTTTGACATACTCAAATTGCCCAAATGTCAGCTGTTTAAACAG---CCAAACAACCAAGTCATCGTTGATACTTTAGTA-----
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51503 111 +    168452 AAGTGGATCTTGCAGATGAAAACCAGTATT-ATTGAGTTTGGCATACTCAAATTGCCCAAATGTCAGCTGTTTAAACAG---CCAAACAACCAAGTCATCATTGATTCTTTAGTA-----
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417759 106 - 210400635 AAGTGGATCCTACAAATGAAAACCAT------GTGAGTTTGACATACTCAAATTGCCCAAATGTCAGCCATTTAAACAG---CCAAACAAGCAAGTCATCATTGATACTTTAGTA-----
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1093615 111 +   1314817 AAGTGGATCTTGCAAATGAAAACCAGTATT-ATTGAGTTTGACATACTCAAATTGCTCAGATAGCAGCTGTTTAAACAG---CCAAACAAACCAGTCATCGTTAATACTCTAGTG-----
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6451617 111 -   6597006 AAGTGGATCTTGCAAATGAAAACCAGTATT-ATTGAGTTTGACATACTCAAATTGCTCAGATACCAGCTGTTTAAACAG---CCGAACAAACAAGTCATCATTAATACTTTAGTG-----
i aotNan1.NW_018488791v1       C 0 C 0
s otoGar3.GL873538              19697131 101 -  27850971 AAGTGGATCTATCAAATGAAAACCAGAATTAAGAGAGGTTTACAT-----AATTGCCTAAATGTCAGATGTTTAAATAG---CCAAGCAACCAAG------TTAATATTTTAGTG-----
i otoGar3.GL873538             C 0 N 0
s canFam3.chr2                  79175650  99 -  85426708 AAGCATATTTTGTACGTGGAAACTAGCATG-CTTCAGTC--------------TGCCCAAGTACCAGCCTTTTAAATAGCACCTAAACAACCAAGTTGTCA---ATATTTCAGTG---GT
i canFam3.chr2                 C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64677310  12 -  72162052 I

a score=369023.000000
s hg38.chr14_GL000009v2_random     56409 50 +    201709 GTTAGTAAATGTCATCGAAGGCTTATTTGCATTTTACAGTttttattact
s panTro5.chr9                  41735979 50 + 116767853 GTTAGTAAAGATCATCGAAAGCTTATTTGCATTTTACAGTttttattact
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089436 50 - 114479721 GTTAGTAAAGGTCATCGAAAGCTTATTTGCATTTTACAGTTTTTATTACT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22240 49 +     53730 GTTAGT-AAGGTCATCGAAGGCTTATTTGCAGTTTACAGTttttattact
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853487 43 + 122973662 -------AAGGTCATTGAAGGCTTCTTTGCATTTTACAGTTTTTATGACT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547194 43 - 111343173 -------AAGGTCATCAAAGGCTTATTTTCATTTTACAGTTTTTATTACT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139275 43 - 111193037 -------AAGGTCATCGAAGACTTATTTGCATATCACAGTttttattact
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394851 43 +    434444 -------AAGGTCATAGAAGGCTTATTTGCATTTTACAGTTTTTATTACT
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433727 43 -    438202 -------AAGGTCATAGAAGGCTTATTTGCATTTTACAGTttttattact
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483208 43 +  90373283 -------AAGGTCATAGAAGGCTTATTTGCATTTTACAGTTTTTATTACT
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543356 43 -   1547936 -------AAGGTCATAGAAGGCTTATTTGCATTTTACAGTTTTTATTACT
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51614 43 +    168452 -------AAGATCTTCGAAGACTTATTTGCATGTCACAGTttttattact
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417865 42 - 210400635 -------AAGGTCATTGAAGGCTTA-TTGCATTTTACCGTTTTTATTACT
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1093726 43 +   1314817 -------GAGGTCATTGATGGCTTATTTGCATTTTACAGTTTTTATTACT
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6451728 43 -   6597006 -------GAGGTCATTGATGGCTTATTTGCATTTTATAGTTTTCATTACT
i aotNan1.NW_018488791v1       C 0 C 0
s canFam3.chr2                  79175749 41 -  85426708 ---------GTTAACTGATAGCTTTTTTGTATTTTACAGTTTCTATTACT
i canFam3.chr2                 C 0 N 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64677310 12 -  72162052 I

a score=1451903.000000
s hg38.chr14_GL000009v2_random     56459 186 +    201709 --------taggagagttaaggagtacctgccaggtttgtccatgctaatgttacaattttctttttgtagttcaaccgtattttgtatggagatactttgaggctctgtaaatatctggttactcctcaga-----acccactagatttagcatttcatggatgacttgtgtttgaacaattattactatgatggtta
s panTro5.chr9                  41736029 186 + 116767853 --------taagagacttaaggagtacctgccaggtttgtccatgctgatgttacgattttctttttgtagttcaaccgtattttgtatggagataccttgaggctctgtaaatatctggtcactcctcaga-----acccactagatttagcatttcatggatgacttgtgtttgaacaattattactatgatggttg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089486 186 - 114479721 --------TAAGAGACttaaggagtacctgccaggtttgtccatgctaatgttacgattttctttttgtagttcaaccgtattttgtatggagataccttgaggctctgtaaatatctggttactcctcaga-----acccactagatttagcatttcatggatgacttgtgtttgaacaattattactatgatggttg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22289 186 +     53730 --------taggagacttaagtagtacctgccaggtttgtccatgctaatgctatgattttgtttttgtagttcaaccatattttgtatggagatactttgaggctctgtaaatatctggttactcctcaga-----acccactagatttagcatttcatggatgacttgtgtttgaacaattattactatggtggttg
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853530 186 + 122973662 --------TAGGAGAgttaaggagtacttcccaggtttgtccatgctaatgttatgattttctttttgtagttcaaccgtattttgtatggagatactttgaggctctgtaaatatctggttactcctcaga-----acccactagatttagcatttcatggatgacttgtgtttgaacaattattactatgatggttg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547237 193 - 111343173 ACATATAGTAGGAGACttaaggagtacctgccaggttcatccatactaatgttatgattttctttttgtagttcaacagtattttgtgtggagatactttgaggctctgtaaaca-ctggttactcctcaaa-----acccactagatttagcatttcattgatgacttgtctttgaacaagtattactgtgatggttg
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139318 186 - 111193037 --------taggagacctaaggagtacctgccaggcttgtccatgctaatgttatgattttctttttctagttgaaccgtattttgtgtggtgatgatctgaggctctgtaaatatctggttactcctcaaa-----acacactagatttggcatttcatggatgacttgtgtttgaacaattattactgcaatggttg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          394894 186 +    434444 --------TAGGAtagttaaggagtacctgccaggtttgtccatgctaatgttacaattttctttttgtagttcaaccgtattttgtatggagctactttgaggctctgtaaatatctggttactcctcaga-----acccactagatttagcctttcatggatgacttgtgttttaacaattattactacgatggttg
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433770 186 -    438202 --------taggagacctaaggagtacctgccaggcttgtccatgctaatgttatgattttctttttgtagttgaaccgtattttgtgtggtgatgatctgaggctctgtaaatatctggttactcctcaga-----acccactagatttagcctttcatggatgacttgtgttttaacaattattactacgatggttg
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483251 186 +  90373283 --------TAGGAtagtttaggagtacctgccaggtttgtccatgctaatgttacaattttctttttgtagttcaaccgtattttgtatggagctactttgaggctctgtaaatatctggttactcctcaga-----acccactagatttagcctttcatggatgacttgtgttttagcaattattactatgatggttg
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543399 186 -   1547936 --------TAGGAtagttaaggagtacctgccaggtttgtccatgctaatgttacaattttctttttgtagttcaaccgtattttgtagggagctactttgaggctcggtaaatatctggttactcctcaga-----acccactagatttagcctttcatggatgacttgtgttttaacaattattactacgatggttg
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51657 186 +    168452 --------taggagacctaaggagtacctaccagtattgtccaggctaatgttatgattttctttttgtcgttgaaccgtattttgtgtggagatgatctgaggctctgtaaatatctggttactcctcaaa-----acacactggatttggcattgcatggatgacttgtgtttgaacaattattactccaatggttg
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130417907 194 - 210400635 CTATATGGTAGGAGACttaaggagcacccgccaggtttgtccatgggagtgttacaatttcctttttgtagttcaacagtattttgtgtggagatactttgaggctctgtcaatacctggttacttctcaaa-----acctgctagttttagcatttcattgatgacttgtgttagaacaattattactatgatgattt
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1093769 188 +   1314817 AT----------GGACGTAAGGAGCTCctgccaggtttgtccacagaaattttactattttc-ttttgtagttcaacagtattttgtatggagatactttgaggctctgtaaatatctgattactcctcagaatttcacccactagctttatcattttattgatgatttgtgcttgaacaattactactatgatggttt
i cebCap1.NW_016107851v1       C 0 I 323
s aotNan1.NW_018488791v1         6451771 197 -   6597006 AA-GATAGTAATAGAAGtaaggagttcctgccaggtttgtctatggtaattttactattttc-ttttgtagttcaacagtattttgtatggagatactttgaggctctgtaaatatctgattactcctcagaatttcacccactagctttatcattttattgatgatttgtgcttgaacaattactactatgatggttt
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64677310  12 -  72162052 I

a score=160112.000000
s hg38.chr14_GL000009v2_random     56645 18 +    201709 ccagatgattattttctt
s panTro5.chr9                  41736215 18 + 116767853 ccagatgattattttctt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089672 18 - 114479721 ccagatgattattttctt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22475 18 +     53730 ccagatgattattttctt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853716 18 + 122973662 ccagatgattattttctt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547430 18 - 111343173 ccagatgattattttctt
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139504 18 - 111193037 ccaggtgattattttctg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          395080 18 +    434444 ccagatgattattttctt
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433956 18 -    438202 ccagatgattattttctt
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483437 18 +  90373283 ccagatgattattttctt
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543585 18 -   1547936 ccagatgattattttctt
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51843 18 +    168452 ccaggtgattattttctg
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130418101 18 - 210400635 ccagatgattatttcctt
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1094280 18 +   1314817 ccaaatgattattttctt
i cebCap1.NW_016107851v1       I 323 C 0
s aotNan1.NW_018488791v1         6451968 18 -   6597006 ccaaattattattttctt
i aotNan1.NW_018488791v1       C 0 I 325
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64677310 12 -  72162052 I

a score=48336.000000
s hg38.chr14_GL000009v2_random     56663 9 +    201709 attctcttc
s panTro5.chr9                  41736233 9 + 116767853 attctcttc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089690 9 - 114479721 attctcttc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22493 9 +     53730 attctcttc
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853734 9 + 122973662 attctcttc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547448 9 - 111343173 attctcttc
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139522 9 - 111193037 attctcttc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          395098 9 +    434444 gttctcgtc
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          433974 9 -    438202 gttctcgtc
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483455 9 +  90373283 gttctcttc
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543603 9 -   1547936 gttcttgtc
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51861 9 +    168452 attctcttc
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130418119 9 - 210400635 attttcttg
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1094298 5 +   1314817 attct----
i cebCap1.NW_016107851v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e aotNan1.NW_018488791v1         6451986 325 -   6597006 I
e saiBol1.JH378105              64677310 12 -  72162052 I

a score=335317.000000
s hg38.chr14_GL000009v2_random     56672 42 +    201709 ttt-gttctacatGGAGAAATAAAACCAATAAATAAGGGAGAA
s panTro5.chr9                  41736242 42 + 116767853 ttt-gttgtacatGGAGAAATAAAACCAATAAATAAGGGAGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089699 42 - 114479721 ttt-gttctacatGGAGAAATAAAACCAATAAATAAGGGAGAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22502 42 +     53730 ttt-gttctacatGGAGAAATAAAACCAATAAATAAGGGAGAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853743 42 + 122973662 ttt-gttctacatGGAGAAATAAAACCAATAAATAAGGGAAAA
i nomLeu3.chr1a                C 0 I 1
s rheMac8.chr15                   547457 42 - 111343173 ttc-gttctacatGGAGAAATAAAACGAGTAAATAAAGGAGAA
i rheMac8.chr15                C 0 I 1
s macFas5.chr13                111139531 42 - 111193037 ttt-gttctacatGGAGAAATAAAAACAATAAATAAGGGAGAA
i macFas5.chr13                C 0 I 1
s macNem1.NW_012012823v1          395107 42 +    434444 ttt-gttctacatGGAGAAATGAAACCAATAAATAAGAGAGGA
i macNem1.NW_012012823v1       C 0 I 1
s cerAty1.NW_012002921v1          433983 43 -    438202 tttggttctacatGGAGAAATGAAACCAATAAATAAGAGAGGA
i cerAty1.NW_012002921v1       C 0 I 1
s chlSab2.chr2                  66483464 42 +  90373283 ttt-gttctacatGGAGAAATGAAACCAATAAATAAGAGAGGA
i chlSab2.chr2                 C 0 I 1
s manLeu1.NW_012105442v1         1543612 42 -   1547936 ttt-gttctacatGGAGAAATGAAACCAATAAATAAGAGAGGA
i manLeu1.NW_012105442v1       C 0 I 1
s colAng1.NW_012121088v1           51870 42 +    168452 ttt-gttctgcatGGAGAAATAAAACTGATAAATAAGGGAGAA
i colAng1.NW_012121088v1       C 0 I 1
s calJac3.chr1                 130418128 42 - 210400635 ttt-gttctacatAGAAAAATAAAACCAATAAATAAGAGAGAG
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1094303 42 +   1314817 ttt-attctatgtgggtaaataaaaccaataaatagggtagaa
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6452311 42 -   6597006 ttt-attcTATATGGATAAATAAAACCAATAAATAGGGTCGAA
i aotNan1.NW_018488791v1       I 325 C 0
e papAnu3.chrUn_NW_003903855v1    130449 10755 -    180295 I
e saiBol1.JH378105              64677310 12 -  72162052 I

a score=41022.000000
s hg38.chr14_GL000009v2_random     56714 4 +    201709 -AGAA
s panTro5.chr9                  41736284 4 + 116767853 -GGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089741 4 - 114479721 -GGAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22544 4 +     53730 -GGAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853786 4 + 122973662 -GGAA
i nomLeu3.chr1a                I 1 C 0
s rheMac8.chr15                   547500 4 - 111343173 -GGAA
i rheMac8.chr15                I 1 C 0
s macFas5.chr13                111139574 4 - 111193037 -GGAA
i macFas5.chr13                I 1 C 0
s macNem1.NW_012012823v1          395150 4 +    434444 -GGAA
i macNem1.NW_012012823v1       I 1 C 0
s cerAty1.NW_012002921v1          434027 4 -    438202 -GGAA
i cerAty1.NW_012002921v1       I 1 C 0
s papAnu3.chrUn_NW_003903855v1    141204 4 -    180295 -AGAA
i papAnu3.chrUn_NW_003903855v1 I 10755 n 10755
s chlSab2.chr2                  66483507 4 +  90373283 -GGAA
i chlSab2.chr2                 I 1 C 0
s manLeu1.NW_012105442v1         1543655 4 -   1547936 -GGAA
i manLeu1.NW_012105442v1       I 1 C 0
s colAng1.NW_012121088v1           51913 4 +    168452 -GGAA
i colAng1.NW_012121088v1       I 1 C 0
s calJac3.chr1                 130418170 5 - 210400635 GGGAA
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1094345 5 +   1314817 aggaa
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6452353 5 -   6597006 AGGAA
i aotNan1.NW_018488791v1       C 0 C 0
e saiBol1.JH378105              64677310 12 -  72162052 I

a score=2269687.000000
s hg38.chr14_GL000009v2_random     56718 304 +    201709 AGCTCATGattctgatgctccaattccccaagattaggccagtagtagacattccaagctga--ctttatgt-ctctttgatttgtctccattactctgtcggcacttttttactttctttc---agaagatgttctaagctcagcttgta-ttttctctgcaccagctctggaatgagtcattttttttagaagcAGAGGTGGAGCCACTGAGGAAACACAGG-TGAGCCCTCCCCAGTGTGTACTCACTGGTCCCCAACAGAAGAACCACTGCCACATCCACTGAAGTACCAAGAAACTAGCAAAGGGAC
s panTro5.chr9                  41736288 304 + 116767853 AGCTCATGattctgatgctccaattccccaagattaggccagtagtatatattccaagctga--ctttatgt-ctttttgatttgtctccattactctgtcggcacttttttactttctggc---agaagatattctaagctcatcttgta-ttttctctgccccagctctggaatgagtaattttttttagaagccGAGGTGGAGCCAATGAGGAAGCACAGG-TGAGCCCTCCCCAGCGTGTACTCACTGGTCCCCAACAGAAGAACTGCTGCCGCATCCACTGAGGTACCAAGAAACTAGCAAAGGGCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96089745 304 - 114479721 AGCTCATGattctgatgctccaattccccaagattaggccagtagtagacattccaatctga--ctttatgt-ctctttgatttgtctccattactctgtcagcacttttttactttctggc---agaagattttctaagctcatcttgta-ttttctctgccccagctctggaatgagtaattttttttagaagcAGAAGTGGAGCCAATGAGGAAGCACAGG-TGAGCCCTCCCCAGCATGTACTCACTGGTCCCCAACAGAAGAACCGCTGCCACATCCACTGAGGTACCAAGAAACTAGCAAAGGGCC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22548 304 +     53730 AGCTCATGattctgatgctccaattccccaagattaggccagtggtagacattccaagctga--cttgatgtgttttttgatttgtctccattattctgtcagcacttttttactttctggc---acaagatgttctaagctcatcttgta-ttttctctgccccagtgctgcaatgagtaattttttttagaagcagaggtggagccactga-gaagcacagg-caagccctccccagtgtgtactcactggtccccaacagaagaacagctgccgcatccacTGAGGTACCAAGAAACTAGCAAAGGGCC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40853790 303 + 122973662 AGCTCATGattctggtggtccagttctccaagattaggccagtggtagacatttcaagctga--ctttatgt-ctttttgatttgtccctgttactctggcaggactttttt-ctttctggc---acaagatgttctaagctaatcttgtg-ttttctctgccccagccctggaacgggtaatttttcttagaagcAGAGGTGGAGCCACTGAGGAAGCACAGG-CAAGCCCTCCCCAGCATGCGCTCACTAGTGTCCAACAGAAGAACCGCTGCTGCATCTACTGAGGTACCAAGAAACTAGCAAAGGGCC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547504 304 - 111343173 AGCTCATGattctggtgctccaattccccaagattaggccaggagtagacatttcaagctga--ctttatgt-ccttcttatttgtccccgttactctgtcagcacttttttaatttctggc---ataagatgttctaaactaatcttgta-ttttctctgcctcagccctagaatgagtaatttttcttagaagcAGAGTTGGAGCCACCGAGGAAGCACAGG-TGAGTCTTCCCCAGCATGCACTCACTAGTCCCCAACAGAAGAACTGTTGCTACATCCACTGAGGTACCAAGAAACTAGCAGAGGGCC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139578 306 - 111193037 AGCTCATGTttctggtgctccaattccccaagattaggccagtggtagatattctaagctgactctttatgt-ctttttgatttgtgcctgttactctgtcagcacttttttactttctggc---acaagatgttctaagataatcttgtg-ttttctctgccccagccctgaaatgagtgatttttTTTGGAATCAGAGGTGGAGCCACTGAGGAAGCACAGG-CGAGCCCTCCCCAGCATGTGCTCACTGGTCCTCAACAGAAGAACAGCTGCTGCATCCACTGAGGTACCAAGAAACTAGCAAAGGGCC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          395154 288 +    434444 AGCTCATGattctggtgctccagttccccaagattag-------------atttcaagctga--ttttatgt-ctttttgatttgtccctgttactccatcagcacttttttagtttctggc---acaagatgtc---atctaatcttgta-ttttttctgccccagccctggaatgagtgatttttcTTAGACGCAGAGGTGGAGCCACTGAGGAAGCACAAG-CGAGTCCTCCCCAGCACGTGCTTACTGGTCCCCAACAGAAAAACCGCTGCTGCATCCACTGAGGTACCAAGAAACAAGCAAAGGGCC
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          434031 292 -    438202 AGCTCATGattctggtgctccagttccccaagattag-------------atttcaagctga--ttttatgt-ctttttgatttgttcctgttactccgtcagcacttgtttagtttctggc---acaagatgttctaatctaatcttgtatttttttctgccccagccctggaatgagtgatttttcttagaagcAGAGGTGGAGCCACTGAGGAAGCACAAG-CGAGCCCTCCCCAGCACGTGCTTACTGGTCCCCAACAGAAAAACCGCTGCTGCATCCACTGAGGTACCAAGAAACAAGCAAAGGGCC
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483511 291 +  90373283 AGCTCATGATTCTGGTGCTCCAGTTCCCCAAGATTAG-------------ATttcaagctga--ttttatgt-ctttttgatttgtccctgttactccgtcagcacttttttactttctggc---acagggtgtactaagataatcttgtg-ttttctctgccccagccctgaaatgagtgatttttcttagaagTAGAGGTGGAGCCACTGAGGAAGCACAAG-CGAGCCCTCCCCAGCACGTGCTTACTGGTCCCCAACAGAAAAACCACTGCTACATCCACTGAGGTACCAAGAAACAAACAAAGGGCC
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543659 291 -   1547936 AGCTCATGattctggtgctccagttccccaagattag-------------atttcaagctga--ttttatgt-ctttttgatttgtccctgttactccgtcagcacttgtttagtttctggc---acaagatgttctaatctaatcttgta-ttttttctgccccagccctggaatgagtgatttttcttagaagcAGAGGTGGAGCCACTGAGGAAGCACAAG-CGAGCCCTCCCCAGCACGTGCTTACTGGTCCCCAACAGAAAAACCGCTGCTGCATCCACTGAGGTACCAAGAAACAAGCAAAGGGCC
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           51917 302 +    168452 AGCTCGTGattctggtgctccaattccccaaaattaggagagtggtagacattccaagctga--ctttgtgt-ctttttgatttgtgcccattactctgtcagcacttttttactttctggc---acaagatgttctaagataatcttgta-ttttctctgtctcagccctggaat--gtcatttttcttagaagTAGAGGTGGAGCCACTGAGGAAGCACAGG-CGAGCCCTCCCCAGCATGTGCTCACTGGTCCCCAACAGAAGAACAGCTGCTGCATCCACTGAGGTACCAAGAAACTAGCAAAGGGCC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130418175 303 - 210400635 AGCTCATGattctggtgctccaattccccaagattaggccagtggtagacatttcaagctaa--ctttgtgt-ctttttgatctgtccccattactgtgttagcaggttttaactttctggc---acaagatactctaagctaatcttgta-ttttctctgccccagccctggaatgagtgatttttcttagaagcagaggtggagcaactgaggaagcactgg-cgagccttccccagcacatgcgcactggtccc-aacagaagaaccactgctgcatccacTGAGGTACCAAGAAACTAGCAAAGGGTC
i calJac3.chr1                 C 0 C 0
s cebCap1.NW_016107851v1         1094350 307 +   1314817 atcttataattttggtgctcaaatgcccccagatttggccactggtagtgatttgaagctga--cttcatat-cttcttgatctgtctttattattcttttagcacttttttactttctggtccaataagatgttccaaacttatcttgta-ttttttctgcctcagccctggaatgactgatttttcttagaagcAGAGGTGGAGCCCCCGAGGAAGCACAGGACAAGCCCTTCCCAGCACGTGCTCACCAGTTCCGAGCAGAAAGAAC-CTGCCGCATCCACTGAGGTACTAAGAAACTAGCAAAAGGCC
i cebCap1.NW_016107851v1       C 0 I 5
s aotNan1.NW_018488791v1         6452358 307 -   6597006 ATCTTACAattttggtgctcaaatgcccccagatttggccactggtagcaatttcaagctga--cctcatat-cttcttgatctgtcttcattattcttttagcacttttttactttctggtccaataagatgttccaagcttatcttgta-ttttttctgccccagcgctggaatgactgatttttcttagaagcAGAGGTGGAGCCACCGAGGAATCACAGGACAAGCCCTTCCCAGCACGTGCTCACCAGTTCCGAGCAGAAAGAAC-CTGCTGCATCCACTGAGGTACCAAGAAACTAGCAAAAGGCC
i aotNan1.NW_018488791v1       C 0 I 5
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e saiBol1.JH378105              64677310  12 -  72162052 I

a score=160599.000000
s hg38.chr14_GL000009v2_random     57022 17 +    201709 TTCTGGCTGTCTGGGGA
s panTro5.chr9                  41736592 17 + 116767853 ATCTGGCTCTCTGGGGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96090049 17 - 114479721 TTCTGGCTGTCTGGGGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22852 17 +     53730 TTCTGGCTCTCTGGGGA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40854093 17 + 122973662 TTCTGGCTCTCTGGGGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547808 17 - 111343173 TTCTGGCTATCTGGGGA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139884 17 - 111193037 TTCTGGCTGTCTGGGGT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          395442 17 +    434444 TTGTGACTGTCTGGGGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          434323 17 -    438202 TTGTGACTGTCTGGGGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483802 17 +  90373283 TTGTGACTGTCTGGGGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543950 17 -   1547936 TTGTGACTGTCTGGGGA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           52219 17 +    168452 TTCTGGCTGTCTGGGGA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130418478 17 - 210400635 TTCTGGCTGTCTGGGGA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64677322 17 -  72162052 TTCTGGCTGTCTGGGGA
i saiBol1.JH378105             I 12 C 0
s cebCap1.NW_016107851v1         1094662 17 +   1314817 TTCTGGCTGTCTGAGGA
i cebCap1.NW_016107851v1       I 5 C 0
s aotNan1.NW_018488791v1         6452670 17 -   6597006 TTCTGGCTGTCTGGGGA
i aotNan1.NW_018488791v1       I 5 I 57
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I

a score=1013647.000000
s hg38.chr14_GL000009v2_random     57039 135 +    201709 GAGTACTCATGTGGT-CCCTGGCT--GTCTCAGAGGTTCTGGATTAGTCTTCCTGTAGCCTCTGTGTTGTGTCTTTAGATCGGGGCTCTGTGGGAAGGGCCCTGAGAGACCCAACAGCACAGCGTGCCTTATCTGCCA
s panTro5.chr9                  41736609 135 + 116767853 CAGTCCTCTTGTGGT-CCCTGGCT--GTCTCAGAGGTTCTGGATTCATCTTCCTATAGCCTCTGTGCTGTGTCTTTAGATCGGGGCTCTGTGGGAAGGGCCCTGAGAGACCCAACAGCACAGCGTGCCTTATCTGCCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96090066 137 - 114479721 GAGTCCTCAGGTGGT-CCCTGGCTTAGACTCAGAGGTTCTGGATTAGTCTTCCTGTAGCCTCTGTGTTGTGTCTTTAGATCGGGGCTGTATGGGAAGGGCCCTGGGAGACCCAACAGCACAGGGTGTCTCATTTGCCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           22869 137 +     53730 CAGTCCTCATGTGGT-CCCTGGCTCAGCCTCAGAGGTTCTGGATTAGTCTTCCTGTAGCCTCTGAGCTGTGTCTTTAGATCGGGGCTCTGTGGGAAGGGCCCTGGGAGACCCAACAGCATAGTGTGTCTCATCTGCCA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40854110 138 + 122973662 CCATCCTCATGTGGTCCCCTGGCTCAGCCTCAAAGGTTGTGGATTAGTCTTCCTGTAGCCTCTGTGCTATGTCTTTAGATTGGGGCTCTGTGGGAAGGGCCCTTGGAGACCCAGCAGCACAGAGTGTCTCATCTGCTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547825 137 - 111343173 CAGTCCTGACGTGGT-CCCTGGCTCAGCCTCAAGGGTTCTGGATTAGTCTCCCTGCAGCCTCTGTGCTGTGTCTCTAGATTGGGGCTCTGTGAGATGGGCCCTGGGAGACCCAGCAGCACAGGGTGTCTCCTCTGCCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111139901 136 - 111193037 CAGTCCTCATGTGGT-CCCTGGCTCAGCCTCAAGGGTTCTGGGTTAGTCTCCCTGCAGCCTCTGTGCTGTGTCTCTAGATC-GGGCTCTGCGGGAAGGGCCCCGGGAGACCCAGCAGCACAGGGTGTCTCGTCTGCCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          395459 137 +    434444 CAGTCCTCATGTGGT-CCCTGACTCAGCCTCAAAGGTTGTGGATTAGTCTTCGTGTAGCCTCTGTGCTGTGTCTTTAGATTGGGGCTCTGTGGGAAGGGCCCTGGGAGACCCAGCAGCACAGGGTGTCTCTTCTGCCA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          434340 137 -    438202 CAGTCCTCATGTGGT-CCCTGACTCAGCCTCAAAGGTTGTGGATTAGTCTTCATGTAGCCTCTGTGCTGTGTCTTTAGATTGGGGCTCTGTGGGAAGGGCCCTGGGAGACCCAGCAGCACAGGGTGTCTCTTCTGCCA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483819 136 +  90373283 CAGTCCTCATGTGGT-CCCTGACTCAGCCTCAAAGGTTGTGGATTAGTCTTCGTGTAGCCTCTGTGCTGTGTCTTTAGATTGGGGCTCTGTGGGAAGGG-CCTGGGAGACCCAGCAGCACAGGGTGTCTTGTCTGCCA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1543967 137 -   1547936 CAGTCCTCATGTGGT-CCCTGACTCAGCCTCAAAGGTTGTGGATTAGTCTTCATGTAGCCTCTGTGCTGTGTCTTTAGATTGGGGCTCTGTGGGAAGGGCCCTGGGAGACCCAGCAGCACAGGGTGTCTCTTCTGCCA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           52236 136 +    168452 CAGTCCTCATGTGGT-CCCTGGCTCAGCTTCAAGGATTCTGGGTTAGTCTCCCTGCAGCCTCTGTGCTGTGTCTCTAGATC-GGGCTCTGCGGGAAGGGCCCTGGGAGACTCAGCAGCACAGGGTCTCTCGTCTGACA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130418495 137 - 210400635 CAGTCCTCATGTGGC-CCTTGACCCAGTCTTGAAGGTTCTGGTTTAGTCACCCTACAGCCTCTGTGCTGTGTCTCTGGTTGGGTTCTCTGTAGGAAGGACCCTGGGAGACCCAGCAGCACAGGGTGTCTCATCTGCCA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64677339 133 -  72162052 CAGTCCTCGTGT----TCCTGGCTCA-CCTCGAACACTCTGGACCAGTCTCCCAGCAGCCTCCGTGCTGTGTCTCCAGATCTGAGCTCTGAGGGAAGGGCCCTGGGAGACCCAGGAGAACAGGGTGCCTCCTCTGCCA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1094679 133 +   1314817 CAGTCCTTGTGT----CCCTGGCTCA-CCTTGAATGCTCTGAACCAGTCTCCCAGCAGCTTCCGTGCTGTGTCTCTAGATCTGAGCTCTGCGGGAAGGGCCCTGGGAGACCCAGGAGAACAGGGTACCTCATCTGCCA
i cebCap1.NW_016107851v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e aotNan1.NW_018488791v1         6452687  57 -   6597006 I

a score=1547677.000000
s hg38.chr14_GL000009v2_random     57174 172 +    201709 AATGTCCCTCCCTTCCTCACACTCTGACACTCAGGAATAGGGTAGATGGTGTGTCCAGGCAGTGTCAGGCCACCTCACTTTCTCCTTTGAGACGGGCCCAGAGGGCCTTT-GGGG-TGAGTGTGGAGCTGGGAACTTGGAGCCTGAGGCCAACTGTCTCTCCCTGTGTCTTGGA
s panTro5.chr9                  41736744 172 + 116767853 AATGTCCCTCCCTTCCTCACACTCTGACATTCAGGAATAGGGTAGATGGCGTGTCCAGGCAGTGTCAGGCCACCTCACTGTCTCCTTTGAGATGGGACCAGAGGGCCTTT-GGGG-TGAGTGTGGAGCTGGGAACCTGGAGCCTGAGGCCAACTGTCTCTCTCTGTGTCTTGGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96090203 171 - 114479721 AATGTCCCTCCCTTCCTCACACTCTGACACTCAGGAATAGGGTAGATGGCGTGTCCAGGCAGTGTCAGGCCACCTCACTGTCTCCTTTGAGATGGGACCAGAGGGCCTTT--GGG-TGAGTGTGGAGCTGGGAACCTGGAGCCTGAGGCCAACTGTCTCTCTCTGTGTCTTGGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           23006 171 +     53730 AATGTCCTTCCCTTCCTCACACT-TGACACTCAGGAATAGGGTAGATGGCGTGTCCAGGCAGTGCCAGGCCACCTCACTGTCTCCTTTGAGATGGGCCCAGAGGGCCTTT-GGGG-TGAGTGTGGAGCTGGGAACCTGGAGCCTGAGGCCGACTGTCTCTCCCTGTGTCTTGGA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40854248 173 + 122973662 ACTGTCCCTCCCTTCCTCACACTCTGACACTCAGGAATAGGGTAGATGGCATGTCCAGGCAGTGCCAGGCCACCTCACTGTCTCCTTTGAGATGGGCCCAGAGGACCTTTGGGGG-TGAGTGTGGAACTGGGCACCTGGAGCCTGAGGCCAACTGTCTCTCCCTGTGTCTTGGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   547962 173 - 111343173 AATGTCTCTCCCTTCCTCGCACTCTGACACTCTGGAATAGGATAGGTGGCGTGTCCAGGCAGTGCCAGGCCACCTCACTGTCTCCTTTGAGATGGACCCAGAGTGCCTTG-AGGGGTGAATATGAAGCTGGGCACCTGGAGCCTGAGGCTGACTGTCTCTCCCTGTGTCTTGGA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111140037 173 - 111193037 AATGTCCCTCCCTTCCTCCCACTCTGACACTCAGGAATAGGGTAGATGGGGTTTCCAGGCTGTGCCAGGCCACCTCACTGTCTCCTCTGAGATGAACCCTGAGGGCCTTG-GGGGATGAGTGTGAAGCTGGCTACCTGGAGCCTGAGGCTGACTGTCTCTCCCTGTGTCTTGGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          395596 171 +    434444 AATGTCCCTCCGTTCTTCACACTCTGACACTCAGGAATAGGGTAGATGGCATCTCCAGGCAGTGCCAGGCTG-CTTACTGTCTCTTTTGAGTTGGGCCCAGAGGGCCTTT-GGGG-TGAGTGTGGAGCTGGTCACCTGGAGCCTGAGGCTGACTGTCTCTCCCTGTGTCTTGGA
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          434477 171 -    438202 AATGTCCCTCCGTTCTTCACACTCTGACACTCAGGAATAGGGTAGATGGCATCTCCAGGCAGTGCCAGGCTG-CTTACTGTCTCTTTTGAGTTGGGCCCAGAGGGCCTTT-GGGG-TGAGTGTGGAGCTGGTCACCTGGAGCCTGAGGCTGACTGTCTCTCCCTGTGTCTTGGA
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66483955 172 +  90373283 AATGTCCCTCCCTTCCTCCCACTCTGACACTCAGGAATAGGGTAGATGGCATCTCCAGGCAGTGCCAGGCTGCCTCACTGTCTCTTTTGAGATAGGCCCAGAGGGCCTTT-GGGG-TGAGTGTGGAGCTGGGCACCTGGAGCCTGAGGCTGACTGTCTCTCCCTGTGTCTTGGA
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1544104 171 -   1547936 AATGTCCCTCCGTTCTTCACACTCTGACACTCAGGAATAGGGTAGATGGCATCTCCAGGCAGTGCCAGGCTG-CTTACTGTCTCTTTTGAGTTGGGCCCAGAGGGCCTTT-GGGG-TGAGTGTGGAGCTGGTCACCTGGAGCCTGAGGCTGACTGTCTCTCCCTGTGTCTTGGA
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           52372 173 +    168452 AATGTCCCTCCCTTCCTCCCACTCTGACACTCAGGAATAGGGTAGATGGGGTTTCCAGGCTGTGCCAGGCCACCTCACTGTCTCCTTTGAGATGAACCCTGAGGGCCTTG-GGGGATGAGTGTGCAGCTGGCTACCTGGAGCCTGAGGCTGACTGTCTCTCCCTGTGTCTTGGA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130418632 173 - 210400635 AATGTTCCTGTCTTCCTCCCTCTCTGACACTCAAGAATAGGATAGATGGCATGTCCAGGCAGTGCCAGGACACCTCACTGTCTCCTTTGAGATGGGTCCAGAGGGTCTTG-AGGGGTGAGTGTGGAGTTGGGCACCTTGAGCCTGAGGCCAACTGTCCCTCCCTGGGTCTTGGA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64677472 173 -  72162052 AATGTCCCTCCCTTCCTCCCACTCTGAGGCTCAGGAATAGGCTTGATTGTGTGTCCAGGTGGTGCCAGGCCACCTCATTGTCTCCTTTGAGATGGTCTCAGGGGACCTTG-AGGAGCGAGTATGAAGCTGGGCACCTGGAGCCTGAGGCCGACTGTCCCTCCCTGTGTCCTAGA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1094812 173 +   1314817 AATGTCCCTCCCTTCCTCCAGCTCTGAGGCTCAGGAATAGGCTTGATTGTGTGTCCAGGTGGTGCCAGGCCACCTCACTGACTCCTTTGAGATGGTCTCAGAGGGCCTTG-AGGGGCAAGTGTGAAGCCAGGCACCTGGAGCCTGAGGCCGACTGTCCCTCCCTGTGTCCTGGA
i cebCap1.NW_016107851v1       C 0 I 215
s aotNan1.NW_018488791v1         6452744 173 -   6597006 AATGTCCCTCCCTTCCTCCCACTCTGAGGCTCAGGAATAGGCTTGATTGTGTGTCCAGGTAGTGCCAGGCCACCTCTTTGTCTCCTTTGAGATGGTCTCAGAGGGCCTTG-AGGGGCGAGTGTGAAGCCGGGCACCTGGAGCCTGAGGCCGACTGTCCCTCCCTGTGTCCTGGA
i aotNan1.NW_018488791v1       I 57 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I

a score=1128258.000000
s hg38.chr14_GL000009v2_random     57346 162 +    201709 GGAAAGGCCAC--GTCCCAAAAAAAAAAC-CCAGGGCCTGACCTCCGGGCACACATGCAGGGAGGGAGGGTCTATGAGCTGA-GGGGGA-CATTGTAATGAGACTTTGAACCCCGTTGCTCTGGggcctggtcagtggaccatggtcagagatgacctggtcatcag
s panTro5.chr9                  41736916 163 + 116767853 GGAAAGGCCAT--GTCCCCCCAAAAATACTCCAGGGCCTGACCTCTGGGCACACATGCAGGGAGGGAGGGTCTATGAGCTGA-GGGGGA-CATTGTAATGAGACTTTGACTCCCATTGTTCAGaggcctggtcagtggaccatggtcagagatgacctggtcatcag
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96090374 163 - 114479721 GGAAAGGCCAT--GTCCCCCAAAAAATACTCCAGGGCCTGACCTCTGGGCACACATGCAGGGAGGGAGGGTCTATGAGCTGA-GGGGGA-CATTGTAATGAGACTTTGACTCCCGTTGTTCAGaggcctggtcagtggaccatggtcagagatgacctggtcatcag
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           23177 161 +     53730 GGAAAGGCCGT--TTCCCAAAAAAAATCC-CCAGGGCCTGACCTCTGGGCACACATGCAGGGAGGGAGGGTC-GTGAGCTGA-GGGGGA-CATTGTAATAAGACTTTGAGCACGGCTGCTCAGGggcctggtcagtggaccatggtcagaggtgacctggtcatcag
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40854421 160 + 122973662 GGAAAGCCTGT--GTCCC-AAAGAGACCC-CCTGGGCCTGACCTCTGGGCACACAAGCA-GGAGGGAGGGTCTGTGAGCTGA-AGGGGT-CATTGTAATAAATCTTTGAGCACCGCTGCTCAGGggcctggtcagtggaccatggtcagagacgacctggtcatcag
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   548135 163 - 111343173 GGAGAGGCCTTGGGGCCC-AAGAAAACCC-CCAGTGCCTGACCTCTGGGCACACATACAGGGCGGGAGGGTCTGTGGGCTGA-TGGGGG-CATTGTAATGAGACTTTGAACACAGCTGCTCAAGgacctcatcagtggaccatggtcagagatgacctggtcatcag
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111140210 162 - 111193037 GGAGAGGCCTT--GTCCC-AAGAAAACCC-CCAGGGCCTGACCCCTGGGCATGCATGCAGGGAGGGAGGGTCTGTGGGCTAAGGGGGGG-CATGGTAATGAGACTTTAAGCAGCACTGCTCAGGGGCCGGGTGGGTAGACCGTGgtcagaaatgacctggtcattag
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012823v1          395767 161 +    434444 GGAAAGGCAGT--GTCCC-AAAAAAGACC-CCAGGGCCTGACCTCTGGGCACACATGCAGGGAGGCGGGGTCTGTGAGCTGA-GGGGGA-CATTGTAATGAGACTTTGAGCACTGCTGTTCAGGGGCCTTGCCAGTGGACCATGGTCAGAGATGACCTGGTCATCAG
i macNem1.NW_012012823v1       C 0 C 0
s cerAty1.NW_012002921v1          434648 161 -    438202 GGAAAGGCAGT--GTCCC-AAAAAAGACC-CCAGGGCCTGACCTCTGGACACACATGCAGGGAGGCAGGGTCTGTGAGCTGA-GGGGGA-CATTGTAATGAGACTTTGAGCACTGCTGCTCAGGggccttgtcagtggaccatggtcagagatgacctggtcatcag
i cerAty1.NW_012002921v1       C 0 C 0
s chlSab2.chr2                  66484127 161 +  90373283 GGAAAGGCAGT--GTCCC-AAAAAAGACC-CCAGGGCCTGACCTCTGGGCACACATGCAGGGAGGCAGGGTCTGTGAGCTGA-GGGGGA-CATTGTAATGAGACTTTGAGCACTGCTGCTCAGGgaccttgtcagtagaccgtggtcagagatgacctggtcatcag
i chlSab2.chr2                 C 0 C 0
s manLeu1.NW_012105442v1         1544275 161 -   1547936 GGAAAGGCAGT--GTCCC-AAAAAAGACC-CCAGGGCCTGACCTCTGGACACACATGCAGGGAGGCAGGGTCTGTGAGCTGA-GGGGGA-CATTGTAATGAGACTTTGAGCACTGCTGCTCAGGggccttgtcagtggaccatggtcagagatgacctggtcatcag
i manLeu1.NW_012105442v1       C 0 C 0
s colAng1.NW_012121088v1           52545 162 +    168452 GGAGAGGCCTT--GTCCC-AAGAAAAACC-CCAGGGCCTGACCTCTGGGCATACATGCAGGGAGGGAGGGTCTGTGGGCTTA-GGGGGAGCATTGTAATGAGACTTTAAGCTGTACTGCTCAGGGCCCGGGTGAGTAGACCATGgtcagaaatgacctggtcattag
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130418805 161 - 210400635 GGAGAGGTCTT--TTCCC-AAAAAACCCC-TCAGTGCCTGACCTCTGGGCACACATGCAGGGAGGGAGGGTCTATGGGCTGA-GGGGGA-CATCAGAACAAGACTTTGAGGATCCCTGCTCAGGGGCCTGGTCAGTGGACCATGGTCAGAGATTACCTGGTCATTAG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64677645 160 -  72162052 TGAGGGTCCTT--GTCCA-GAGAAGACCC-CCAGGACCTGACCTGTGGGTGTATATGCAGAGGGAGAGGGTCTGTGGGCTGA-GGGGG--CATTGGAAGGGGACTTGGAGCACCACCGCCTAGGGCCCTGGTCAGCGGGGCCTGGTCAGCGAAGACCTGGTCATCAG
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6452917 160 -   6597006 AGAGGGTCCTT--GTCCA-GAGAAGACCC-CCAGGACCTGACCTGTGGGTGCATTTGCAGAGAGAGAGGGTCTGTGGGCTGA-GGGAG--CATTGGAAGGGGACTTGGAGCACCACTGCTCAGGGGCCTGGTCAGCGGGGCCTGGTCAGCGAAGACCTGGTCATCAG
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e cebCap1.NW_016107851v1         1094985 215 +   1314817 I

a score=360786.000000
s hg38.chr14_GL000009v2_random     57508 57 +    201709 gacctggtcatttgggacctgatcagcaggggcctggttagtggcagcctcc---------------tcagt
s panTro5.chr9                  41737079 72 + 116767853 gacctagtcatttgggacctgataagcaggggcctggttagtagtggcctcctcagtaaaggcctcatcagt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96090537 72 - 114479721 gacctagtcatttgggacctgataagcaggggcctggttagtagtggcctcctcagtaaaggcctcatcagt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           23338 72 +     53730 gacctagtcatttgggacctcatcagcaggtgcctggttagtgGTGGGCTCCTCAGTAAaggcctcatcagt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40854581 72 + 122973662 gacctggccagttgggacctgatcagcaggggcctggttaatggtggcctcctcagtaaaggcctcatcagt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   548298 57 - 111343173 gacctggtcagttgggacctgatcagcagggaccaggttagtggcagcttccttagt---------------
i rheMac8.chr15                C 0 I 15
s macFas5.chr13                111140372 57 - 111193037 gacctagtcagttggtacctgatcaccaggggcctggttagtggtgttctcctcagt---------------
i macFas5.chr13                C 0 I 15
s macNem1.NW_012012823v1          395928 57 +    434444 gacctagtcagctgggacctgatcagcaggggcctggttagtggtggcctcctcagt---------------
i macNem1.NW_012012823v1       C 0 N 0
s cerAty1.NW_012002921v1          434809 57 -    438202 gacctagtcagctgcgacctgatcagcaggggcctggttagtggtggcctcctcagt---------------
i cerAty1.NW_012002921v1       C 0 N 0
s chlSab2.chr2                  66484288 57 +  90373283 gacctagtcagctgggacctgatcagcaggggcctggttagtggtgtcctcctcagt---------------
i chlSab2.chr2                 C 0 N 0
s manLeu1.NW_012105442v1         1544436 57 -   1547936 gacctagtcagctgggacctgatcagcaggggcctggttagtggtggcctcctcagt---------------
i manLeu1.NW_012105442v1       C 0 N 0
s colAng1.NW_012121088v1           52707 57 +    168452 gacctagtcagttggtacctgatcagcaggggcctggttagtggtgtcctcctcagt---------------
i colAng1.NW_012121088v1       C 0 I 15
s calJac3.chr1                 130418966 57 - 210400635 AACGTAAGCAGTTGGGACCTGATCAGCAGGGGCCTGGTTCGTGGTggcctcctcagt---------------
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64677805 38 -  72162052 GGC-------------------CCAGCAGGGACCTGCTTAGTGGTggcgtcttcagt---------------
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6453077 38 -   6597006 GGC-------------------CCAGCAGGGACCTGCTTAGTGGTggcctcttcagt---------------
i aotNan1.NW_018488791v1       C 0 C 0
s tarSyr2.KE942496v1              120778 51 +    410062 GACCTGGTCATTGGAAGTTTGGTCAGTGAGGATCTGGTCATCAGGGTTCCT---------------------
i tarSyr2.KE942496v1           N 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e cebCap1.NW_016107851v1         1094985 215 +   1314817 I

a score=14423.000000
s hg38.chr14_GL000009v2_random     57565 2 +    201709 gg
s panTro5.chr9                  41737151 2 + 116767853 gg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96090609 2 - 114479721 gg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           23410 2 +     53730 gg
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40854653 2 + 122973662 gg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   548370 2 - 111343173 gg
i rheMac8.chr15                I 15 C 0
s macFas5.chr13                111140444 2 - 111193037 ag
i macFas5.chr13                I 15 C 0
s macNem1.NW_012012133v1        26451158 2 +  28977278 gg
i macNem1.NW_012012133v1       N 0 C 0
s cerAty1.NW_012000030v1         5647354 2 +   8072957 gg
i cerAty1.NW_012000030v1       N 0 C 0
s chlSab2.chr12                  3737915 2 - 108555830 gg
i chlSab2.chr12                N 0 C 0
s manLeu1.NW_012106397v1          163375 2 +   1331228 gg
i manLeu1.NW_012106397v1       N 0 C 0
s colAng1.NW_012121088v1           52779 2 +    168452 gg
i colAng1.NW_012121088v1       I 15 C 0
s calJac3.chr1                 130419023 2 - 210400635 ga
i calJac3.chr1                 C 0 I 15
s saiBol1.JH378105              64677843 2 -  72162052 ga
i saiBol1.JH378105             C 0 I 15
s aotNan1.NW_018488791v1         6453115 2 -   6597006 ga
i aotNan1.NW_018488791v1       C 0 I 15
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e cebCap1.NW_016107851v1         1094985 215 +   1314817 I
e tarSyr2.KE942496v1              120829 0 +    410062 C

a score=341871.000000
s hg38.chr14_GL000009v2_random     57567 42 +    201709 ggacctggtgacctagtcattggaagcctggtcagtgggggg--------------
s panTro5.chr9                  41737153 42 + 116767853 ggacctggcgacctagtcgttggaagcctggtcagtgggggg--------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96090611 42 - 114479721 ggacctggcgacctagtcgttggaagcctggtcagtgggggg--------------
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           23412 41 +     53730 gtacctggtgacctagtcattggaagcctggtcagt-ggggg--------------
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40854655 42 + 122973662 gaacctggcgacctactcattggaagactggtcagtcggggg--------------
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   548372 40 - 111343173 gaacctggtgacctagtcattggaagcctagtcagt--gggg--------------
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111140446 40 - 111193037 ggacctggcaacctagtcattggaagcctggtcagt--gggg--------------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26451160 40 +  28977278 gaacctggtgacctagtcattggaagcctagtcagt--gggg--------------
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5647356 40 +   8072957 gaacctggtgacctagtcattggaagcctagtcagt--gggg--------------
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3737917 40 - 108555830 ggacctggtgacctagtcattggaagcctagtcagt--ggag--------------
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          163377 40 +   1331228 ggacctggtgacctagtcattggaagcctagccagt--agag--------------
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           52781 40 +    168452 ggacctggcgacccagtcattggaagcctggtcagt--gggg--------------
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130419040 40 - 210400635 ggacctggggacctggtcattggaagcctagtcagt--gggg--------------
i calJac3.chr1                 I 15 C 0
s saiBol1.JH378105              64677860 39 -  72162052 ggacctggagacctagtccttgggggcct-gtcatt--gggg--------------
i saiBol1.JH378105             I 15 C 0
s cebCap1.NW_016107851v1         1095200 39 +   1314817 ggacctggagacctagtcattgggggcct-gtcagt--gggg--------------
i cebCap1.NW_016107851v1       I 215 C 0
s aotNan1.NW_018488791v1         6453132 39 -   6597006 ggacctggagacctagtcactaggggcctggtcggt--ggg---------------
i aotNan1.NW_018488791v1       I 15 C 0
s tarSyr2.KE942496v1              120829 50 +    410062 -AATCCAGT--CCTGGTCATCAG-AGTCTGGTCAGT--GGGAACTTTTTTTCGGGG
i tarSyr2.KE942496v1           C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I

a score=484809.000000
s hg38.chr14_GL000009v2_random     57609 70 +    201709 acctagtcagtggtggctttattact-gGGGCCTGATCTGTTGGAACATAAACAATGAAAAACTGGTTGGT
s panTro5.chr9                  41737195 70 + 116767853 acctagtcagtgGTGGGTTTATTAGT-GGGGCCTGATCGGTTGGAACATAAACAATGAAAAACTGGTTGGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96090653 70 - 114479721 acctagtcagtggtggccttattagt-gGGGCCTGATCGGTTGGAACATAAACAATGAAAAACTGGTTGGT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           23453 70 +     53730 acctagtcagtggtggccttattagt-gGGGCCTGATTGGATGGAACATAAACAATGAAAAACTGGTTGGT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40854697 70 + 122973662 acctggtcattggtggccttattagt-gGGGCCTGATCAGTTGGAACATAAATAGTGAAAAACTGGTTGAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   548412 59 - 111343173 acctggtcagtggtggccttatTCAT-GGAACCTGAACTGCTGGAACGTAAACAA-----------TTGAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111140486 70 - 111193037 acatggtcagtgggggtcttattagt-ggggcctcatctgttggaacataaacaatgAAAAACTGGTTGGT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26451200 59 +  28977278 acctggtcagtggtggccttatTCAT-GGAACCTGAACTGCTGGAACGTAAACAA-----------TTGAT
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5647396 59 +   8072957 acctggtcagtggtggccttatTCAT-GGAACCTGAACTGCTGGAACGTAAACAA-----------TTGAT
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3737957 70 - 108555830 acctggtcagtggtggccttattggt-gGGGCCTGATCGGTTGAAACATAAACTATAAAAAACTGGTTGGT
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          163417 70 +   1331228 acctggtcagtggtggccttattagt-ggggcctGATTGGTTGAAACATAAACTATAAAAAACTGGTTGGT
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           52821 70 +    168452 acctggtcagtgggggtcttattagt-gGAGCCTGATTGGTTGGAACATAAACAATGAAAAACTGGTTGGT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64677899 69 -  72162052 acctagtcagtggtggccttgctagt-gGGACC-GGTCAGTTGGAACCTAAGCAATGAAAACCTGGTTGGT
i saiBol1.JH378105             C 0 I 1
s cebCap1.NW_016107851v1         1095239 70 +   1314817 acctagtcaatggtggccttgctagt-gGGACCTGGTCAGTTGGAACCTAAACAATGAAAACCTGGTTGGT
i cebCap1.NW_016107851v1       C 0 I 997
s aotNan1.NW_018488791v1         6453171 69 -   6597006 acctagtcggtggtggccttgctagt-gGGACC-GCTCAGTTGGAACATAAACAATGAAAACCTGGTTGGT
i aotNan1.NW_018488791v1       C 0 I 1160
s tarSyr2.KE942496v1              120879 71 +    410062 ATCTTGTCAGTGGGGGCCTCATTTGCAGAAGGCTGGTGTATGGGAACCGCCTATGTGGAGGCCTGGTCAGT
i tarSyr2.KE942496v1           C 0 C 0
e calJac3.chr1                 130419080  0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I

a score=1659649.000000
s hg38.chr14_GL000009v2_random     57679 336 +    201709 GGGGCATACACAATATATCACGGGCCTGGTCAGTGTG-G-----------------------------------------------------------GGCCTTAGTGGCTTGGGGCCTGGTCAGTGAG--------------------------------------------------------------------GGCCTGGTCAGAGGGGGCTCAG--TCAGCTGGGTACTCGTTCATGGAGAATTGTTCAGTGGGGGGTCGGTTGAGCAGCAACCTGGTAAATTGTGGTCTTGTCAGTGGGAACCCTGTCTTGTC-AATGGGGACCAGgtcagtggaaaattggtcagtggggtctggcccatgaggcctattaagtgtgggcctggt-taggaagacatggtcagtggggacttgatcagtg-ggacttggtcaatgGAGGAGTGGTCATTAGGGGTCTCATCA
s panTro5.chr9                  41737265 322 + 116767853 GGGGCATATACAGTATACCAGGGGCCTGGTCAGTGTG-G-----------------------------------------------------------GGCCTTAGTGGCTTGGAGCCTGGTCAGTGAG--------------------------------------------------------------------GGCCTGGTCAGAGGGGGCTCGG--TCAGC--------------TGGAGAATTGTTCAGTAGGGGGTCGGGTGAGCAGCAACCTGGTAAATTGTggtcttgtcagtgggaacctggtcttgtt-aatggggaccaggtcagtggaaaattggtcagtggggtctggcccatgaggcctattaagtgtgggcctggt-taggaagacatggtcagtggggacttgatcagtg-ggacctggtcaatggaggagtggtcattagggacctcatca
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96090723 333 - 114479721 GGGGCATATACAGTATACCAGGGGCCTGGTCAGTGTG-G-----------------------------------------------------------GGCCTTAGTGGCTTGGAGCCTGGTCAGTGAG--------------------------------------------------------------------GGCCTGGTCAGAGGGGGCTCGG--TCAGCTGGAGAATC---CATGGAGAATTGTTCAGTAGGGGGTCGGGTGAGCAGCAACCTGGTAAATTGTggtcttgtcagtgggaacctggtcttgtc-aatggggaccaggtcagtggaaaattggtcagtggggtctggcccatgaggcctattaagtgcgggcctggt-taggaagacatggtcagtggggacttgatcagtg-ggacctggtcaatggaggagtggtcattaggggcctcatca
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           23523 329 +     53730 GGGGCATATACAGTATACCAGGGGCCTGGTCAGTGTG-G-----------------------------------------------------------GGCCTTGGTGGCTTGGAGCCTGGTCAGTGAG--------------------------------------------------------------------GGCCTGGTCAGAGGCGGCTTGG--TCAGCTGGGGACTCATCCATGGAGAATTGTTCGGTGGGGGGTCAGGTGAGCAGCAACCTGGTAAATAGTGGTCTTTTCAGTGGGAACCTGGTCTTGTC-CCTGGGGACCAGGTCAGTGGAAAATTGGTCAGTGGAgtctggcccatgaggcctattaagtgcgggcctggt-taggaagacatggtcagtggggacttgatcagtg-ggacctggtcaatggaggagtggtcattaggggc-------
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40854767 277 + 122973662 GGGGCCTATACAGTATACTAG-----------------------------------------------------------------------------------------------------------G--------------------------------------------------------------------GGCCTGGTCAGAGGGGGCTCAG--TCAGCTGGGGACTGATCCATGGAGAATTGTTCAGTGGGAGGTCGAGTGAGTGGCAACCTGGTAAACTGTGGTCTTGTCAGTGGCAACCTGGGC------AGTGGGGACCAGGTCAGTGAGAAATTGGCCAGTGGGGTCTGGCCCATGAGGCCTATTAAGTGCGggcctggt-taggaagacatggtcagtggggacttggtcagtg-ggacctggtcagtggaggagtggtcattaggggc-------
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   548471 307 - 111343173 GGGGTCTATTCAGTATACTAGGGGCATGGTCAGTGTG-G-----------------------------------------------------------GGCCTTAGTGGCTTGAAGCCTGGTCAGTGAG--------------------------------------------------------------------GGCCTGGTCAGAGGGGGCTCGG--TCAGCTAGGGACTGATCCATGGAGAATTGTTCAGT-GGAGGTGGGGTTAGCAGCAACCTGGTAAATTGTGGTCTTGTCAGTGGGA---------------------ACCAAgtcagtgggaaattggtcagtggggtctggtccatgaggcctattaa-tgggggcctggt-tatggagacatggtcagtgtggacttggtcagtg-ggacctggtcaatggaggagtggttattaggggc-------
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111140556 323 - 111193037 GGAGCCTATACAGTATACCAGGGGCCTGGTCAGTGTG-G-----------------------------------------------------------GGCCTTAGTGGCTTGGAGCTTGGTCAGTGAG--------------------------------------------------------------------GGCCTGGTCAGAGGGGACTTGG--TCCGCTGGGGACTGATCCATGGAGATTTGTTCAGT-GAGGGATGGGGGGGCGACAACCTGGGAAATTGTggtcttgtcagtgggaacctgggc------agtggggaccaggtcagtgggaaattggtcagtggagtctggcccatgaggccgattaagtgtgagcctggt-taggaagacatggtcagttgggacttggtcagtg-ggacctggtcaatggaggagtggtcattagggtc-------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26451259 307 +  28977278 GGGGTCTATTCAGTATACTAGGGGCATGGTCAGTGTG-G-----------------------------------------------------------GGCCTTAGTGGCTTGAAGCCTGGTCAGTGAG--------------------------------------------------------------------GGCCTGGTCAGAGGGGGCTCGG--TCAGCTAGGGACTGATCCATGGAGAATTGTTCAGT-GGAGGTGGGGTTAGCAGCAACCTGGTAAATTGTggtcttgtcagtggga---------------------accaagtcagtgggaaattggtcagtggggtctggtccatgaggcctattaa-tgggggcctggt-tatggagacatggtcagtgtggacttggtcagtg-ggacctggtcaatggaggagtggtcattaggggc-------
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5647455 307 +   8072957 GGGGTCTATTCAGTATACTAGGGGCATGGTCAGTGTG-G-----------------------------------------------------------GGCCTTAGTGGCTTGAAGCCTGGTCAGTGAG--------------------------------------------------------------------GGCCTGGTCAGAGGGGGCTCGG--TCAGCTAGGGACTGATCCATGGAGAATTGTTCAGT-GGAGGTGGGgttagcagcaacctggtaaattgtggtcttgtcagtggga---------------------accaagtcagtgggaaattggtcagtggggtctggtccatgaggcctattaa-tgggggcgtggt-tatggagacatggtcagtgtggacttggtcagtg-ggacctggtcaatggaggagtggtcattaggggc-------
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3738027 322 - 108555830 GGGGTCGACTCAGTATATtaggggcctggtcagtgtg-g-----------------------------------------------------------ggccttagtggcttggagcctggtcagtgag--------------------------------------------------------------------ggcctggtcagagagggcttgg--tcagCTGGGCACTGATCCATGGAGAACTGTTCAGT-GGGGTTGGGGTGAGCGGCAACCTGGTAAATTGTGGTCTTGTCTGTGGGAACCCAGTC------AATGGGGACCAGAtcagtgggaaattggtcagtggggtctggtccctgaggcctattaa-tgggggcctggt-tagggagacatggtcagtggggacttggtcagtg-ggacctggtcaatggaggagtggtcattaggggc-------
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          163487 322 +   1331228 GGGGTCAACTCAGTATATTAGGGGCCTGGTCAGTGTG-G-----------------------------------------------------------GGCCTTAGTGGCTTGGAGCCTGGTCAGTGAG--------------------------------------------------------------------GGCCTGGTCAGAGAGGGCTTGG--TCAGCTGGGCACTGATCCATGGAGAACTGTTCAGT-GGGGTTGGGGTGAGCGGCAACCTGGTAAATTGTggtcttgtcagtgggaacccagtc------aatggggaccagatcagtgggaaattggtcagtggggtctggtccatgaggcctattaa-tgggggcctggt-tagggagacatggtcagtggggacttggtcagtg-ggacctggtcaatggagaagtggtcattaggggc-------
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           52891 323 +    168452 GGGGTCTATACAGTATACCAGGGGCCTGGTCAGTGTG-G-----------------------------------------------------------GGCCTTAGTGGCTTGGAGCCTGGTCAGTGAG--------------------------------------------------------------------GGCCTGGTCAGAGGGGACTCGT--TCAGCTGGGGACTGATCCATGGAGATTTGTTCAGT-GAGGGATGGGGGAGCGGCAACCTGGGAAATTGTggtcttgtcagtgggaacctgggc------agtggggaccaggtcagtgggaaattggtcagtggggtctggcccatgaggcctactaagtgtgagcctggt-taggaagacatggtcagttgggacttggtcagtg-ggacctggtcaatggaggagtgggcattaggggc-------
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64677969 443 -  72162052 GGGGCCTGAATAGTTT-----GGGCCTAGTCAGTGCG-GCTTGGGTCAGCAGGAACCTGGTAAACTGTggtctcctcagcgggggcctggtcagtgctggccttgtcagcatag-gcccggtcagtggggactggtcagagggaattagtcaggggtctcgtctgtgGGATCTATTAAGTGGGGGCCTTGTTAAGGAGGCGTGGTCAGTGGGGGTCTGGTCTCAGCAGGGAACTGATCTGTGGAGAATTGTTCAGTTGGGGGTCAGGTCAACAGGAACCTGGTAAATT-TGGTGGTGTCAGCAGGGCCCTGGGTTGGCCTGATG-------GACCAGTGG---CCTGGTCAGTGGggccttgtcagtgatgcctattgagtggaggcctggt-cagggagacatggtcagtggggatgtggtcagtgaggacctggtcagcgGAGGTGTGGCCGTCAGGGGC-------
i saiBol1.JH378105             I 1 I 303
s tarSyr2.KE942496v1              120950 222 +    410062 -------------------GGGGGCCTGGTCTGTGTGTG-----------------------------------------------------------GATCTTCTTAGTGTGGA-CCTAGTCA-TCAG--------------------------------------------------------------------GGCTTGGACATTG--GGCCTAG--CCAGTAGGGTTCTGATCTGAGGTTTTCTGCTCTGT-GGG------------------------------GGCCTGGTCTGTTGGA---------------------ACCTACCCTGTAGGGGTCTAACCTGTGGGGTCCTG--------GCCTG-----TGGGggtctggtctttgggtatctggtaagtagagacctggtcagtgtgggccttgtca------------------------------
i tarSyr2.KE942496v1           C 0 C 0
e calJac3.chr1                 130419080   0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e aotNan1.NW_018488791v1         6453240 1160 -   6597006 I
e cebCap1.NW_016107851v1         1095309 997 +   1314817 I

a score=59467.000000
s hg38.chr14_GL000009v2_random     58015 13 +    201709 CTCATCACTGGGA
s panTro5.chr9                  41737587 13 + 116767853 CTCATCACTGGGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96091056 13 - 114479721 CTCATCACTGGGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           23852 13 +     53730 ctcatcactgGGA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40855044 13 + 122973662 ctcttcagtggga
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   548778 13 - 111343173 ctcgtcagtgGGT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111140879 13 - 111193037 ctcgtcagtaggg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26451566 13 +  28977278 ctcgtcagtgggt
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5647762 13 +   8072957 ctcgtcagtgggt
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3738349 13 - 108555830 ctcatcagtgggg
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          163809 13 +   1331228 ctcatcagtgGGG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           53214 13 +    168452 ctcgtcagtaggg
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64678715 13 -  72162052 ctggtcagtagga
i saiBol1.JH378105             I 303 C 0
s tarSyr2.KE942496v1              121172  2 +    410062 ct-----------
i tarSyr2.KE942496v1           C 0 C 0
e calJac3.chr1                 130419080  0 - 210400635 C
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e aotNan1.NW_018488791v1         6453240 1160 -   6597006 I
e cebCap1.NW_016107851v1         1095309 997 +   1314817 I

a score=140301.000000
s hg38.chr14_GL000009v2_random     58028 25 +    201709 ACCTGGTCAGGGGC-AGTTTGTCAGT
s panTro5.chr9                  41737600 25 + 116767853 ACCTGGTCAGGGGC-GGTTGGTCAGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96091069 25 - 114479721 ACCTGGTCAGGGGC-GGTTAGTCAGT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           23865 25 +     53730 ACCTGGTCAGCAGC-GGTTGGTCAGT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40855057 25 + 122973662 acctggtcagGGGC-AGCTGGTCAGT
i nomLeu3.chr1a                C 0 I 4
s rheMac8.chr15                   548791 25 - 111343173 ACCTGGTTAAGGGT-GCCTGGTCAGT
i rheMac8.chr15                C 0 I 4
s macFas5.chr13                111140892 25 - 111193037 atctggtcaggggc-ggctggtcagt
i macFas5.chr13                C 0 I 4
s macNem1.NW_012012133v1        26451579 25 +  28977278 acctggttaAGGGT-GCCTGGTCAGT
i macNem1.NW_012012133v1       C 0 I 4
s cerAty1.NW_012000030v1         5647775 25 +   8072957 acctggttaAGGGT-GCCTGGTCAGT
i cerAty1.NW_012000030v1       C 0 I 4
s chlSab2.chr12                  3738362 25 - 108555830 acctggttgggggc-acctggtcagt
i chlSab2.chr12                C 0 I 4
s manLeu1.NW_012106397v1          163822 25 +   1331228 ACCTGGTTGGGGGC-ACCTGGTCAGT
i manLeu1.NW_012106397v1       C 0 I 4
s colAng1.NW_012121088v1           53227 25 +    168452 atctggtcaggggc-ggctggtcagt
i colAng1.NW_012121088v1       C 0 I 4
s calJac3.chr1                 130419080 25 - 210400635 acctggtcaggggc-acctggtcagt
i calJac3.chr1                 C 0 I 4
s saiBol1.JH378105              64678728 26 -  72162052 acctgaccagcagtggcctggtttat
i saiBol1.JH378105             C 0 I 3
s tarSyr2.KE942496v1              121174  5 +    410062 ---------ggggc------------
i tarSyr2.KE942496v1           C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e aotNan1.NW_018488791v1         6453240 1160 -   6597006 I
e cebCap1.NW_016107851v1         1095309 997 +   1314817 I

a score=2539846.000000
s hg38.chr14_GL000009v2_random     58053 300 +    201709 ACCTGGCCTGCTGGCCACTATCTGACCTCAGGCAGGGAGGTTGTCTGTGGAGCCTCCTTGCCTCCATCTGCAGGGAAAGTGAGTCGGGGC-ACCCTGGAGGGTCGCTGGAAAGAGAAGGTGAGAAGATGTGTTGAATCCAATACTGCTTGGCAGACCT-ACAACTTTACAAATGACCTGTGTTCCACCTAGAGAGTGTG---------------CCAGCCCTCTCAGCATTATGCAGTGCCCCTCCTCTGTCTGCATCCCCAGTACCACCATGGGTGGGGAGGGCAGAGATTGGGGAGCACCTATAGAGGCTCTAAT
s panTro5.chr9                  41737625 300 + 116767853 ACCTAGTCTGCTGGCCACTATGTGACCTCAGGCAGGGGGTTTGTCTGTGGAGCCTCCTTGCCTCCATCTGCAGGGAAGGTGAGTCAGGGA-AACCTGGAGGGTGGCTGGAAAGAGAAGGTGAGAAGATGTGTTGAATCCAATACTGCTTGGCAGACCT-ACAACTTTACATATGATCTGTGTTCCACCTAGAGAGGGTG---------------CCAGCCCTCTCAGCATTATGCAGTGCCCCTCCTCTGTCTGCATCCCCAGGACCACCATGGGTGGGGAGGGCAGAGATTGGGGAGCACCTATAGAGGCTCTAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96091094 301 - 114479721 ACGTGACCTGCTAGCCACTATGTGACCTCAGGCAGGGGGTTTGACTGTGGAGCCTCCTTGCCTCCATCTGCAGGGAAGGTGAGTCAGGGCAACCCTGGAGGGTGGCTGGTAAGAGAAGGTGAGAAAATGTGTTGAATCCAGTATTGCTTGGCAGGCCT-ACAACTTTACAAATGACCTGTGTTCCACCTAGAGAGGGTG---------------CCAGCCCTCTCAGCAATATGCAGTGCCCCTCCTCTGTCTGCATCCCCAGGACCACCATGGGTGGGGAGGGCAGAGATTGGGGAGCACCTATAGAGGCTCTAAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           23890 296 +     53730 ACCTGGCCCACTGGCCACTGTGTGACCTCAGGTAGGG-GTTTGTCTGTGGAGCCTC---ACCTCCATCTGCAGGGAAGGTGAGTCAGGGC-ACCCTGGAGGGTGGCTGGAAAGAGAAGGTGAGGAGATGTGTTGAATCCAATACTGCTTGGCAGACCT-ACAACTTTACAAATGACCAGTGTTCCACCTAGAGAGGGTG---------------CCAGCCCTCTCAGCATTATGCAGTGCCCCTCCTCTGTCTGCATCCCCAGGACCACCATGGGTGGGGAGGGCAGAGATTGGGGAGCACCTATAGAGGCTCTAAT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40855086 300 + 122973662 ACCTGGCCAGGTGGCCACTATATGACCTCAGGCAGGGGGTTTGTCTGTGGAGCCTCCTTGCCTCCATCTGTAGGGAAGGTGAGTCAGGGC-ACCCTGGAGGGTGGTTGGAAAGAGAAGGTGAGAAGATGTGTTGAATCCAGCACTGCTTGGCAGACCT-ACAACTTTACACATGACCTGCGTTCCACCTAGAGAAGGTG---------------CCAGCCCTCTCTGCTCTACCCGGTGCCCCTCCTCTGTCTGCATCCTCAGGACCACCATGGGTGGGGAGGGCAGAGATTGGGGAGCACCTGTAGAGGCTCTAAT
i nomLeu3.chr1a                I 4 C 0
s rheMac8.chr15                   548820 299 - 111343173 ACCTGgccaattggccgctgtgtgaccttaggcaaggggtttgtctctggatcctccttgcctccatctgtagggaagctgggtcagggc-accttggagggttgctagaaagagtacatgagaagatatgttgaatcca-cactgcttgacagacCT-AGAACTTTACACTTGACCTGGGTTCCACCTAGAGAGGGTG---------------CCAGCCCTTTCTGCTCTGTCCGGCACCCCTCCTCTGTCTGCATTCCCAGGACCACCTTCCGTGGGGAGGGCAGAGATTGGGGAGCACCTGTGGAGGCTGTAAT
i rheMac8.chr15                I 4 C 0
s macFas5.chr13                111140921 300 - 111193037 ATGTGGCCATCTGGCCACTGTGTGACCTCAGGCAGAGGGTTTGTCTGTGGAGTCTCCTTGCTTCCATCTGCAGGGAAGGTGAGTCAGGGC-ACCCTGGCAGGTGGTTGGTAAAAGAAGATGAGAAGATGTGTTGTATCCAGCACTGTTTGGCAGACCT-ACAACTTTACACAGGACCTGTATTCCACCTAGAGAGGATG---------------CCAGCCCTTTCTGCTCTACCCGGTGCCCCTCCTTTGTCTGCATCCCCAGGACCCCCATGGATGGGGAAGGCAGAGATTGGAGAGCACCTGTAGAGGCTCTAAT
i macFas5.chr13                I 4 C 0
s macNem1.NW_012012133v1        26451608 299 +  28977278 ACCTGGCCAATTGGCCGCTGTGTGACCTTAGGCAAGGGGTTTGTCTGTGGATCCTCCTTGCCTCCATCTGTAGGGAAGCTGGGTCAGGGC-ACCTTGGAGGGTTGCTAGAAAGAGTACATGAGAAGATATGTTGAATCCA-CACTGCTTGACAGACCT-AGAACTTTACACTTGACCTGGGTTCCACCTAGAGAGGGTG---------------CCAGCCCTTTCTGCTCTGTCCGGCACCCCTCCTCTGTCTGCATTCCCAGGACCACCTTCCGTGGGGAGGGCAGAGATTGGGGAGCACCTGTGGAGGCTGTAAT
i macNem1.NW_012012133v1       I 4 C 0
s cerAty1.NW_012000030v1         5647804 299 +   8072957 ACCTGgccaattggctgctgtgtgaccttaggcaaggggtttgtctgtggatcctccttgcctccatctgtagggaagctgggtcagggc-accttggagggttgctagaaagagtacgtgagaagatatgttgaatcca-cactgcttgacagacCT-AGAACTTTACACTTGACCTGGGTTCCACCTAGAGAGGGTG---------------CCAGCCCTTTCTGCTCTGTCCGGCACCCCTCCTCTGTCTGCATTCCCAGGACCACCTTCCGTGGGGAGGGCAGAGATTGGGGAGCACCTGTGGAGGCTCTAAT
i cerAty1.NW_012000030v1       I 4 C 0
s chlSab2.chr12                  3738391 291 - 108555830 ACCTGGCCAGTTGGCCGTTGTGTGACCTCAGGCAGGGGGTTTGTCTGTGGAGCCTTCTTGCCTCCATCTGTAGGGAAGCTGAGTTAGGAC-ACCCTGGAGGGTTGCTGGAAAGAGAATGTGAGAAGATGTGTTGAATACA---------GACAGACCT-ACAACTTTACACACGACCTGGGTTCCACCTAGAGAGGGTG---------------CCAGCCCTCTCTGCTCTGCCCAGTGCCCTTCCTCTGTCTGCATCCCCAGGACAACCCTCAGTGGGGAGGGTAGAGTTTGGGGAGCACCTGTGGAGGATCTAAT
i chlSab2.chr12                I 4 I 20
s manLeu1.NW_012106397v1          163851 291 +   1331228 ACCTGGCCAGTTGGCCGTTGTGTGACCTCAGGCAGGGGGTTTGTCTGTGGAGCCTTCTTGCCTCCATCTGTAGGGAAGCTGAGTTAGGAC-ACCCTGGAGGGTTGCTGGAAAGAGAATGAGAGAAGATGTGTTGAATACA---------GACAGACCT-ACAACTTTACACACGACCTGGGTTCCACCTAGAGAGGGTG---------------CCAGCCCTCTCTGCTCTGCCCGGTGCCCTTCCTCTGTCTGCATCCCCAGGACAACCCTCAGTGGGGAGGGTAGAGTTTGGGGAGCACCTGTGGAGGCTCTAAT
i manLeu1.NW_012106397v1       I 4 I 20
s colAng1.NW_012121088v1           53256 300 +    168452 ACGTGGCCAGCTGGCCACTGTGTGACCTCAGGCAGAGGGTCTGTCTGTGGAGTCTCCTTGCCTCCATCTGCAGGGAAGGTGACTCAGGTC-ACCCTGGCGGGTGGCTGGTAAAAGAAGATGAAAAGATGTGTTGAATCCAGCACTGCTTGGCAGACCT-ACAACTTTACACAGGACCTGTGTTCCACCTAGAGAGGGTG---------------CCAGCCCTCTCTGCTCTACCTGGTTCCTCTCCTCTGTCTGCATCCCCAGGACCACCATGGATGGGGAGGAAAGAGATTGGGGAGCACCTGTAGAGGCTCTAAT
i colAng1.NW_012121088v1       I 4 C 0
s calJac3.chr1                 130419109 297 - 210400635 ACCTGGCCAGTTGGCCACTGTGTGACTTCAGGCAGGGGGTTTGTCTGTGGAGCCTCCTTGCCTCCATCTGCAGGGAGGATGAGTC--GGC-GCCCTGGAGGGTTGCTGGAAAGAGAATGTGAGAAGATGTGTTGAATCCAGTACTGCTTGGCAGACCT-AGAACTTTACACATAAATTGTGTTCTACCTAGAGAGGGTG---------------CCAGC-CTCTCTGCTCTGCCCAGTGCCCCTCCTTTGTCTGCATCCTGAAGATCACCCTGGGTGGGGAGGGCAGAGATTGGGGAGCACCTGTGAAGACTCTAAT
i calJac3.chr1                 I 4 C 0
s saiBol1.JH378105              64678757 288 -  72162052 acctggtcagCTGGCCACTGTGTAACCTCAGGGAGGGGGATTGTCCTTGGAGCCTCCTTGCTTCCATCTGTAGG-----TGAGTCCTGGA-ACCCTGGAGGG-AGCTGGGAAGAGAAGATAAAGAGATGTGTTGACTCTAACCCTGCCAGGCAGACCT-AGCAC-TCACACACTACCTG-GCTTGACCGAGAGAGGGCG---------------CCAGCTCTCTGTGCTCAGCGCTGTGTCCTTCC----TCTGCATCTGAAGGACCAGCCTGGGTGGGGAGGGCGGAGTTTGGGAAGCATCAGTGGATGGTCTAAT
i saiBol1.JH378105             I 3 C 0
s cebCap1.NW_016107851v1         1096306 298 +   1314817 ACCTGGTCAGCTGGCCGCTGTGTAACCTCAGGGAGGGGGCTTGTCCTTGGAGCCTCCTTGCTTCCATCTGTAGGGAAGGTGAGTCCTGGC-ACCCTGGAGGG-TGCTGGGAAGAGAAGATAAAGAGATGTGTTGACTCTAACCCTGCCAGGCAGACCT-AGCAC-TCACACACTACCTGGCTTCCACTGAGAGAGGGCA---------------GCAGCTCTCTGTGCTCAGTGCTGTGTCCTTCCTCTGTCTGCATCTGAAGGACCAGCCTGGGTGGGGAGGGCAGAGTTTGGGAAGCACCAATGGATGCTCTAAT
i cebCap1.NW_016107851v1       I 997 C 0
s aotNan1.NW_018488791v1         6454400 299 -   6597006 ACCTGGTCAGCTGGCCGCTGTGTAACCTTAGGGAGGGGGCTTGTCCTTGGAGCCTCCTTGCTTCCATCTGTAGGGAAGGTGAGTCCTGGC-ACCCTGGAGGG-TGCTGGGAAGAGAAGATAAAGAGATGTGTTGACTCTAACCCTGCCAGGCAGACCTAAGCAC-TCACACACTACCTGGCTTCCACCGAGAGAGAGCG---------------CCAGCTCCCTGTGCTCAGCGCTGTGTCCTTCCTCTGTCTGCATCTGAAGGACCAGCCTGGGTGGGGAGGGCAGAGTTTGGGAAGCACCAATAGATGCTCTAAT
i aotNan1.NW_018488791v1       I 1160 C 0
s tarSyr2.KE942496v1              121179 297 +    410062 --ctggccagCTGCCC--CGTGTGACCTCAGGCAGGG-GTTTGTCAT--GCATCTCCTT-CCTCCATCTGTGAGGGA--CTAGGCACGGC-ACCC-AGAGGGCTCTTCTCAGGAGGACATAAGAAGGTATGTGGAATTTG-TCCTGCTGGACAGACCT-AATACTTTACACAC-ACCTGTGTCCCACCTGGGGGGGGGGGCAGGTCCTCTGCTTTCAGCCCTCTTACCTCTGCCTGTGGT--TTCCTCAGTCTGTGTCCCCAGGACCAGCTTC--CTGGGAGGGCAGAGATTGGGAAGCACTTGT-TATGTACTGAT
i tarSyr2.KE942496v1           C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I

a score=25697.000000
s hg38.chr14_GL000009v2_random     58353 3 +    201709 GCT
s panTro5.chr9                  41737925 3 + 116767853 GCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96091395 3 - 114479721 GCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           24186 3 +     53730 GCT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40855386 3 + 122973662 GCT
i nomLeu3.chr1a                C 0 I 12
s rheMac8.chr15                   549119 3 - 111343173 GCT
i rheMac8.chr15                C 0 I 16
s macFas5.chr13                111141221 3 - 111193037 GCT
i macFas5.chr13                C 0 I 2
s macNem1.NW_012012133v1        26451907 3 +  28977278 GCT
i macNem1.NW_012012133v1       C 0 I 16
s cerAty1.NW_012000030v1         5648103 3 +   8072957 GCT
i cerAty1.NW_012000030v1       C 0 I 16
s colAng1.NW_012121088v1           53556 3 +    168452 CCT
i colAng1.NW_012121088v1       C 0 I 16
s calJac3.chr1                 130419406 3 - 210400635 GCT
i calJac3.chr1                 C 0 I 11
s saiBol1.JH378105              64679045 3 -  72162052 GCT
i saiBol1.JH378105             C 0 I 11
s cebCap1.NW_016107851v1         1096604 3 +   1314817 GCT
i cebCap1.NW_016107851v1       C 0 I 11
s aotNan1.NW_018488791v1         6454699 3 -   6597006 GCT
i aotNan1.NW_018488791v1       C 0 I 15
s tarSyr2.KE942496v1              121476 3 +    410062 GCC
i tarSyr2.KE942496v1           C 0 I 11
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e manLeu1.NW_012106397v1          164142 20 +   1331228 I
e chlSab2.chr12                  3738682 20 - 108555830 I

a score=2630.000000
s hg38.chr14_GL000009v2_random     58356 3 +    201709 CTA-
s panTro5.chr9                  41737928 3 + 116767853 CTA-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96091398 3 - 114479721 CTA-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           24189 3 +     53730 CTA-
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40855401 3 + 122973662 TTG-
i nomLeu3.chr1a                I 12 C 0
s macFas5.chr13                111141226 3 - 111193037 CCA-
i macFas5.chr13                I 2 C 0
s calJac3.chr1                 130419420 3 - 210400635 CTG-
i calJac3.chr1                 I 11 I 1
s saiBol1.JH378105              64679059 3 -  72162052 CTA-
i saiBol1.JH378105             I 11 I 1
s cebCap1.NW_016107851v1         1096618 3 +   1314817 CTG-
i cebCap1.NW_016107851v1       I 11 I 1
s tarSyr2.KE942496v1              121490 3 +    410062 -TGG
i tarSyr2.KE942496v1           I 11 C 0
e rheMac8.chr15                   549122 16 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e aotNan1.NW_018488791v1         6454702 15 -   6597006 I
e colAng1.NW_012121088v1           53559 16 +    168452 I
e manLeu1.NW_012106397v1          164142 20 +   1331228 I
e chlSab2.chr12                  3738682 20 - 108555830 I
e cerAty1.NW_012000030v1         5648106 16 +   8072957 I
e macNem1.NW_012012133v1        26451910 16 +  28977278 I

a score=-1150.000000
s hg38.chr14_GL000009v2_random     58359 1 +    201709 A
s panTro5.chr9                  41737931 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96091401 1 - 114479721 A
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           24192 1 +     53730 A
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40855404 1 + 122973662 T
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111141229 1 - 111193037 C
i macFas5.chr13                C 0 I 10
s calJac3.chr1                 130419424 1 - 210400635 T
i calJac3.chr1                 I 1 C 0
s saiBol1.JH378105              64679063 1 -  72162052 A
i saiBol1.JH378105             I 1 C 0
s cebCap1.NW_016107851v1         1096622 1 +   1314817 A
i cebCap1.NW_016107851v1       I 1 C 0
s aotNan1.NW_018488791v1         6454717 1 -   6597006 A
i aotNan1.NW_018488791v1       I 15 C 0
s tarSyr2.KE942496v1              121493 1 +    410062 G
i tarSyr2.KE942496v1           C 0 C 0
e rheMac8.chr15                   549122 16 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e colAng1.NW_012121088v1           53559 16 +    168452 I
e manLeu1.NW_012106397v1          164142 20 +   1331228 I
e chlSab2.chr12                  3738682 20 - 108555830 I
e cerAty1.NW_012000030v1         5648106 16 +   8072957 I
e macNem1.NW_012012133v1        26451910 16 +  28977278 I

a score=7504.000000
s hg38.chr14_GL000009v2_random     58360 1 +    201709 G
s panTro5.chr9                  41737932 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96091402 1 - 114479721 G
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           24193 1 +     53730 G
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40855405 1 + 122973662 G
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   549138 1 - 111343173 G
i rheMac8.chr15                I 16 C 0
s macFas5.chr13                111141240 1 - 111193037 T
i macFas5.chr13                I 10 C 0
s macNem1.NW_012012133v1        26451926 1 +  28977278 G
i macNem1.NW_012012133v1       I 16 C 0
s cerAty1.NW_012000030v1         5648122 1 +   8072957 G
i cerAty1.NW_012000030v1       I 16 C 0
s colAng1.NW_012121088v1           53575 1 +    168452 G
i colAng1.NW_012121088v1       I 16 C 0
s calJac3.chr1                 130419425 1 - 210400635 G
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64679064 1 -  72162052 G
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1096623 1 +   1314817 G
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6454718 1 -   6597006 G
i aotNan1.NW_018488791v1       C 0 C 0
s tarSyr2.KE942496v1              121494 1 +    410062 G
i tarSyr2.KE942496v1           C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e manLeu1.NW_012106397v1          164142 20 +   1331228 I
e chlSab2.chr12                  3738682 20 - 108555830 I

a score=4515831.000000
s hg38.chr14_GL000009v2_random     58361 496 +    201709  
s panTro5.chr9                  41737933 500 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96091403 500 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           24194 501 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40855406 499 + 122973662  
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   549139 492 - 111343173  
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111141241 495 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26451927 492 +  28977278  
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5648123 492 +   8072957  
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3738702 493 - 108555830  
i chlSab2.chr12                I 20 C 0
s manLeu1.NW_012106397v1          164162 498 +   1331228  
i manLeu1.NW_012106397v1       I 20 C 0
s colAng1.NW_012121088v1           53576 494 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130419426 468 - 210400635  
i calJac3.chr1                 C 0 I 2
s saiBol1.JH378105              64679065 520 -  72162052  
i saiBol1.JH378105             C 0 I 2
s cebCap1.NW_016107851v1         1096624 523 +   1314817  
i cebCap1.NW_016107851v1       C 0 I 62
s aotNan1.NW_018488791v1         6454719 519 -   6597006  
i aotNan1.NW_018488791v1       C 0 I 2
s tarSyr2.KE942496v1              121495 483 +    410062  
i tarSyr2.KE942496v1           C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I

a score=200912.000000
s hg38.chr14_GL000009v2_random     58857 23 +    201709 ATTCATCCTCGCAGCAATTCCAT
s panTro5.chr9                  41738433 23 + 116767853 GTTCATCCTCGCAGCCATTCCTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96091903 23 - 114479721 ATTCATCCTCACAGCAATTGCAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           24695 23 +     53730 ATTCATCCTCGCAGCAATTCCAT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40855905 23 + 122973662 ACTCATTTTCGCAGCAATTCCAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   549631 23 - 111343173 ATTTATCCTCACAGCAATTCCAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111141736 23 - 111193037 ATTCATCCTCACAGCAATTCCAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26452419 23 +  28977278 ATTTATCCTCACAGCAATTCCAT
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5648615 23 +   8072957 ATTTATCCTCACAGCAATTCCAT
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3739195 23 - 108555830 ATTCATCCTCACAGCAATTCCAT
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          164660 23 +   1331228 ATTCATCCTCACAGCAATTCCAT
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           54070 23 +    168452 ATTCATCCTCACAGCAATTCCAT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130419896 23 - 210400635 ATTCATCCTCACAGCAATTCCAT
i calJac3.chr1                 I 2 C 0
s saiBol1.JH378105              64679587 23 -  72162052 ATTCATCCTCACAGCGATTTTCT
i saiBol1.JH378105             I 2 C 0
s aotNan1.NW_018488791v1         6455240 23 -   6597006 ATTCATCCTCACAGCAATTTTCT
i aotNan1.NW_018488791v1       I 2 C 0
s tarSyr2.KE942496v1              121978 23 +    410062 aatcattttcagtgcaactctgt
i tarSyr2.KE942496v1           C 0 N 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e cebCap1.NW_016107851v1         1097147 62 +   1314817 I

a score=104498.000000
s hg38.chr14_GL000009v2_random     58880 16 +    201709 TCTGCATCTTTTCTGA
s panTro5.chr9                  41738456 16 + 116767853 TCTGCATCTTTTCTGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96091926 16 - 114479721 TCTGCATCTTTTCTCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           24718 16 +     53730 TCTCCATCTTTTCTGA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40855928 16 + 122973662 TCTGCATCTTTTCTGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   549654 16 - 111343173 TCTGCATCTCCTCTGG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111141759 16 - 111193037 TCTGAATCTCCTCTGG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26452442 16 +  28977278 TCTGCATCTCCTCTGG
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5648638 16 +   8072957 TCTGCATCTCCTCTGG
i cerAty1.NW_012000030v1       C 0 I 19
s chlSab2.chr12                  3739218 16 - 108555830 TCTGAGTCTCCTCTGG
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          164683 16 +   1331228 TCTGCATCTCCTCTGG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           54093 16 +    168452 TCTGAATCTCCTCTGG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130419919 16 - 210400635 TCTACCTCTCCTCAGA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64679610 16 -  72162052 CCCACCTCTCCTCTGG
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6455263 16 -   6597006 CCCACCTCTCCTCTGG
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e cebCap1.NW_016107851v1         1097147 62 +   1314817 I

a score=57487.000000
s hg38.chr14_GL000009v2_random     58896 17 +    201709 TCACCTCC-GTGACCACA
s panTro5.chr9                  41738472 17 + 116767853 TCACCCCC-GTGACCACC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96091942 17 - 114479721 TCACCCCC-GTGACCACC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           24734 17 +     53730 TCACCCCC-GTGACCACC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40855944 17 + 122973662 TCACCCCT-GTGACCACC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   549670 17 - 111343173 CCCCCCCCAAGGACCAC-
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111141775 16 - 111193037 ACACCCCC-AGGACCAC-
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26452458 17 +  28977278 CCCCCCCCAAGGACCAC-
i macNem1.NW_012012133v1       C 0 C 0
s chlSab2.chr12                  3739234 16 - 108555830 ACACCCCC-AGGACCAC-
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          164699 13 +   1331228 ACAACCCC-AGGAC----
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           54109 16 +    168452 ACACCTCC-AGGACCAC-
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130419935 17 - 210400635 ACACCCCT-GGGACCACC
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64679626 17 -  72162052 ACACCCCT-GGGACTATC
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6455279 17 -   6597006 ACACCCCT-GGGACCATC
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e cebCap1.NW_016107851v1         1097147 62 +   1314817 I
e cerAty1.NW_012000030v1         5648654 19 +   8072957 I

a score=34987.000000
s hg38.chr14_GL000009v2_random     58913 6 +    201709 CAGGAC
s panTro5.chr9                  41738489 6 + 116767853 CAGGAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96091959 6 - 114479721 CAGGAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           24751 6 +     53730 CAGGAC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40855961 6 + 122973662 CAGGAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   549687 6 - 111343173 CAGGAC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111141791 6 - 111193037 CAGGAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26452475 6 +  28977278 CAGGAC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5648673 6 +   8072957 CAGGAC
i cerAty1.NW_012000030v1       I 19 C 0
s chlSab2.chr12                  3739250 6 - 108555830 CAGGAT
i chlSab2.chr12                C 0 C 0
s colAng1.NW_012121088v1           54125 6 +    168452 CAGGAC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130419952 6 - 210400635 CAAGAC
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64679643 6 -  72162052 CAGTAC
i saiBol1.JH378105             C 0 C 0
s aotNan1.NW_018488791v1         6455296 5 -   6597006 CAGTC-
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e cebCap1.NW_016107851v1         1097147 62 +   1314817 I
e manLeu1.NW_012106397v1          164712 0 +   1331228 C

a score=1676024.000000
s hg38.chr14_GL000009v2_random     58919 189 +    201709 AACCCCATCAGGGCCCTGTCACCAGGCCCAGTCTAGCTCCATGATAACCAAGACACAGGTCCAGAGACAATCGTCCTACATTGTGCCTGCATCTGACCCCCCTTGGTAGGTAGTGACCAGCACAACATGGAAGAAGCCAGGGCAGCATGCAGCCAGCTGCTCTGCAGCCCCAAATGGCTCCTGGGCCTT
s panTro5.chr9                  41738495 182 + 116767853 AACCCCATCAGGGCCCTGTCACCAGGCCCAGTCCAGCTCCATGATAACCAAGACACAGGTCCAGAGACAACCGTCCTGCATCATGCCTGCATCTGACCCCCCTTGGTGGGTAGTGACCAGCACAACATGGAAGAAGCCAGG-------GCAGCCAGCTGCTCTGCAGCCCCAAATGGCTCCTGGGCCTT
i panTro5.chr9                 C 0 I 1
s panPan2.chr13                 96091965 182 - 114479721 AACCCCATCAGGGCCCTGTCACCAGGCCCAGTCCAGCTCCATGATAACCAAGACACAGGTCCAGAGACAGCCGTCCTGCATCGTGCCTGCATCTGACCCCCCTTGGTGGGTAGTGACCAGCACAACATGGAAGAAGCCAGG-------GCAGCCAGCTGCTCTGCAGCCCCAAATGGCTCCTGGGCCTT
i panPan2.chr13                C 0 I 1
s gorGor5.CYUI01002030v1           24757 189 +     53730 AACCCCATCAGGGCCCTGTCACCAGGCCCAGTCCAGCTCCATGATAACCAAGACACAGGTCCAGAGACAACTGTCCTGCATCGTGCCTGCATCTGAACCCCCTTTGTGGGTAGTGACCAGCACAACATGGAAGAAGCCAGGGCAGCATGCGGCCAGCTGCTCTGCAGCCCCAGATAGCTCCTGGGCCTT
i gorGor5.CYUI01002030v1       C 0 I 1
s nomLeu3.chr1a                 40855967 189 + 122973662 AAGCCCATCAGGACCATGTCACCAGGCCCAGTCCGGCTCCATGATAACCAAGATGCAGGTCCAGAGACAACCGCCCTGCATGGTGCCTGCATCTGAGCCCCCTTGGTGGGTAGTGATGAGCACAACATGGAAGAAGCCAGGGCAGCATGCGGCCAGCTGCCCTGCAGCCCCAGATGTCTCCTTGGCCTT
i nomLeu3.chr1a                C 0 I 1
s rheMac8.chr15                   549693 189 - 111343173 AACCCCATCAGTGCCCTATCACCAGGCCCAGTCTGGCTCCATGATAGCCAAGAAGCAGATCTAGAGACAACTGCCCTGCATGGTGGCTGCATCTGACTCCCCTTGATGGGTAGTGATGAGCACAACATGGAAGCCTCCAGGGCAGCATGCGGACAGCTGCCCTGCAGCCCCAGATGGCACCTGGGCCTT
i rheMac8.chr15                C 0 I 1
s macFas5.chr13                111141797 189 - 111193037 AACCCCATCAGGGCCCTGTCACCAGGCCCAGTCTGGCTCCATGATAACCAAGACGCAGGTCCAGAGACAAGCGCCCTGCATGGTGCCTGCATGTGACTCCCCTTGGTGGGTAGTGACCAGCTCACCACGGAAGAAGCCAGGGCAGCATGCGGCCATCTGCCCTGCAGCCCCAGATGACTCCTGGGCCTT
i macFas5.chr13                C 0 I 1
s macNem1.NW_012012133v1        26452481 189 +  28977278 AACCCCATCAGGGCCCTATCACCAGGCCCAGTCTGGCTCCATGATAGCCAAGAAGCAGATCCAGAGACAACTGCCCTGCATGGTGGCTGCATCTGACTCCCCTTGATGGGTAGTGATGAGCACAACATGGAAGAAGCCAGGGCAGCATGCGGACAGCTGCCCTGCAGCCCCAGATGGCACCTGGGCCTT
i macNem1.NW_012012133v1       C 0 I 1
s cerAty1.NW_012000030v1         5648679 189 +   8072957 AACCCCATCAGGGCCCTATCACCAGGCCCAGTCTAGCTCCATGATAGCCAAGAAGCAGATCCAGAGACAACTGCCCTGCATGGTGCCTGCATCTGACCCCCCTTGATGGGTAGTGATGAGCACAACATGGAAGAAGCCAGGGCAGCATGTGGACAGCTGCCCTGCAGCCCCAGATGGCACCTGGGCCTT
i cerAty1.NW_012000030v1       C 0 I 1
s chlSab2.chr12                  3739256 189 - 108555830 AACCCCATCGGGGCCCTATCACCAGGCCCAGTCTGGCTCCATGATAACCAAGACGCAGGTCCAGAGACAACTGCCTTGCATGGTGCCTGCATCTGACCCCCCTTGGTGGATAGTGATGAGCACAACATGAAAGAAGCCAGGGCAGCATGCGGACAGCTGCCCTGCAGCCCCAGATGGCACCTGGCCCTT
i chlSab2.chr12                C 0 I 1
s manLeu1.NW_012106397v1          164712 189 +   1331228 AACCCCATCAGGGCCCTGTCACCAGGCCCAGTGTGGCTCCATGATAACCAAGACGCAGGTCCAGAGACAACTGCCCTGCATGGTGCCTGCATCTGACCTCCCTTGGTGGATAGTGATGAGCACAACATGGAAGAAGCCAGGGCAGCATGCGGACAGCTGCCCTGCAGCCCCAGATGGCACCTGGGCCTT
i manLeu1.NW_012106397v1       C 0 I 1
s colAng1.NW_012121088v1           54131 189 +    168452 AACCCCATCAGGGCCCTGTCACCAGGCTCAGTCTCGCTCCATGATAACCAAGACGCAGGTCCAGAGACCAGCGCCCTGCATGGTGCCTGCATGTGACTCCCCTTGGTGGGTAGTGACCAGCACATCATGGAAGAAGCCAGGGCAGCGTGCGGCCAGCTGCCCTGCAGCCCCAGATGACTCCTGGGCCTT
i colAng1.NW_012121088v1       C 0 I 1
s calJac3.chr1                 130419958 188 - 210400635 AACTCCTTCAGGGCCCTGACACCAGGCCCAGTCCAGCTCCTTGATAACCAAGTTGCAGGTTCAGAGACAACCGCCCTGCATGGTGCCTGCATCTCAACCCCCTTGGTGGGCAGTGACCAGCACAACATGGAAGAAGCCAGGGCAGGGTGCAGCCAGCTGTCCTGCAACCCCAGG-GGCTCCTGGGCCTT
i calJac3.chr1                 C 0 I 1
s saiBol1.JH378105              64679649 179 -  72162052 AGCCCCGTCAAGGCCCTGACATCAGGAGCAGTTCAGCTCCATGATAACTAAGACAGAGGTCCAGAGACAGCCCCACTCCATGGTCCCTGCATCTGATCCCCATTGGTGTGTGGTGGCCAACACCACATGGAAGAAGCCAGAGCAGCATGCAGCCAGATGCTCTGCAGCCCCA----------GGGCCTT
i saiBol1.JH378105             C 0 I 1
s cebCap1.NW_016107851v1         1097209 189 +   1314817 AGCCCCATCAAGGCCGTGACACCAGGAGCAGTTCAGCTCCGTGGTAACCAAGACACAGCTCCAGAGACAACCCCACTCCATGGTCCCTGCATCTGACCCCCATTGGTGTGTAGTGGCCAACACCACATGGAAGAAGCCAGAGCAGCATGCAGCCAGCTGCTCTGCAGCCCCAGATGGCTCCTGGGCCTT
i cebCap1.NW_016107851v1       I 62 I 1
s aotNan1.NW_018488791v1         6455301 189 -   6597006 AGCCCCATCAAGGTCCTGACACCAGGAGCAGTTCAGCTCCATGATAACCAAGACACAGCTCCAGAGACAACCCCACTCCATGGTCCCTGCATCTGACCCCCCTTGGTGTGTAGTGATCAACACAACATGGAAGAAGCCAGAACAGCATGCAGTCAGCTGCTCTGCAGCCCCAGATGGCTCCTAGGCCTT
i aotNan1.NW_018488791v1       C 0 I 90
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I

a score=667525.000000
s hg38.chr14_GL000009v2_random     59108 89 +    201709 GCAAGTCATTCATAAAGGGAAAGCTGGTCACTTTGAGGTCTCTGAAGGGAAGGGTGAACGTG-CATCCCAACAGCCCTGGCAGCCAGCAG
s panTro5.chr9                  41738678 89 + 116767853 GGAAGTCATTCTTAAAGGGGAAGCTGGTCACTTTGAGGTCCCTGAAGGGAAGGGTGAACGTG-CATCCCAACAGCCCTGGCAGCCAGCAG
i panTro5.chr9                 I 1 C 0
s panPan2.chr13                 96092148 89 - 114479721 GGAAGTCATTCTTAAAGGGGAAGCTGGTCACTTTGAGGTCCCTGAAGGGAAGGGTGAACGTG-CATCCCAACAGCCCTGGCAGCCAGCAG
i panPan2.chr13                I 1 C 0
s gorGor5.CYUI01002030v1           24947 89 +     53730 GGAAGTCATTCTTAAAGGGGAAGCTGGTCACTTTGAGGTCCCTGAAGGGAAGGGTGAATGAG-CATCCCAACAGCCCTGGCAGCCAGCAG
i gorGor5.CYUI01002030v1       I 1 C 0
s nomLeu3.chr1a                 40856157 89 + 122973662 GGAAATCATTCTTAAAGAGGAAGCTGGTTACTTTGAGGTCCCTGGAGGGAAGGGTGAACGTG-CATCCCAACAGCCCTGGCAGCCAGCAG
i nomLeu3.chr1a                I 1 C 0
s rheMac8.chr15                   549883 90 - 111343173 GGAAGTCGTTCTCAAAGGGGAAGCTCGTCACTTTGATATCCCTGGAGGGAAAGGTGAACGTGGCATCCCGACAACCCTGGCAGCCAGCAG
i rheMac8.chr15                I 1 C 0
s macFas5.chr13                111141987 90 - 111193037 AGAAGTCATTCTTAAAGGGAAAGCTGGTCACTTTGAGGTCCCTGGAAGGAAGGGTGAATGTGTCATCCCAACAGCCCTGGCAGCCAGCAG
i macFas5.chr13                I 1 C 0
s macNem1.NW_012012133v1        26452671 90 +  28977278 GGAAGTCGTTCTCAAAGGGGAAGCTCGTCACTTTGATGTCCCTGGAGGGAAAGGTGAACGTGGCATCCCGACAACCCTGGCAGCCAGCAG
i macNem1.NW_012012133v1       I 1 C 0
s cerAty1.NW_012000030v1         5648869 90 +   8072957 GGAAGTCGTTCTCAAAGGGGGAGCTCGTCACTTTGATGTCCCTGGAGGGAAAGGTGAACGTGGCATCCCGACAACCCTGGCAGCCAGCAG
i cerAty1.NW_012000030v1       I 1 C 0
s chlSab2.chr12                  3739446 90 - 108555830 GGAAGTCATTCTCAAAGGGGAAGCTGGAAACTTTGATGTCCCTGGAGGGAAGGGTAATCGTGGCCTCCCAACAACCCTAGCAGCCAGCAG
i chlSab2.chr12                I 1 C 0
s manLeu1.NW_012106397v1          164902 90 +   1331228 GGAAGTCGTTCTCAAAGGGGAAGCTGGAAACTTTGATATCCCTGGAGGAAAGGGTAAACGTGGCCTCCCAACAACCCTAGCAGCCAGCAG
i manLeu1.NW_012106397v1       I 1 C 0
s colAng1.NW_012121088v1           54321 90 +    168452 GGAAGTCATTCTTAAAGGGGAAGCTGGTCACTCTGAGGTCCCTGGAAGGAAGGGTGAATGTGTCATCCCAACAACCCTGGCAGCCAGCAG
i colAng1.NW_012121088v1       I 1 C 0
s calJac3.chr1                 130420147 89 - 210400635 GGAAGACATTATCAAAGGAGAAGCTCATCACTTTGAGGTCCCTGGAGGGAAGGGCAAACGTGGCATCCTGACAACCCTGGCAGCCAGCA-
i calJac3.chr1                 I 1 C 0
s saiBol1.JH378105              64679829 89 -  72162052 GGAAGTCATTCTCAATGAGAAAGCGAGTCACTTTGAGGTCACTGGAGAGAAAAATGAATGTGGCATCCTGGCAATCCTGGCAGACAGCA-
i saiBol1.JH378105             I 1 C 0
s cebCap1.NW_016107851v1         1097399 89 +   1314817 GGAAGTCATTCTCAATGAGAAAGCAAGTCACTTTGAGGTCACTGGAGGGAAAAATGAACATGGCATCCTAGCAATCCTGGAAGACAGCA-
i cebCap1.NW_016107851v1       I 1 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e aotNan1.NW_018488791v1         6455490 90 -   6597006 I

a score=1061285.000000
s hg38.chr14_GL000009v2_random     59197 134 +    201709 CATGCCATATATCTTCTCACCCAACCTGTGTGACAGAGGTCCCCTCCTGGGGCACAAGTCCCATACCTAAAGCATCCTGTCCCAGTCGGACCTCATCCTGAGCCCTGGGAGGGGA-GGGGTACCATGGG-CCC-CCC
s panTro5.chr9                  41738767 134 + 116767853 CATGCCATACATCTTCTCACCCAACCTGTGTGACAGAGGCCCCCTCCTGGGGCACAAGTCCCATACCTAAAGCATCCTGTCCCTGTCAGACCTCATCCTGAGCCCTGGGAGGGGA-GGGGCACCATGGG-CCC-CCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96092237 127 - 114479721 CATGCCATACATCTTCTCACCCAACCTGTGTGACAGAGGCCCCCTCCTGGGGCACAAGTCCCATACCTAAAGCATCCTGTCCCTGTCAGACCTCAT-------CCTGGGAGGGGA-GGGGCACCATGGG-CCC-CCC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25036 134 +     53730 CATGCCATACATCTTCTCACCCAACCTGTGTGACAGAGACCCCCTCCTGGGGCACAAGTCCCATACCTAAAGCATCCTGTCCCAGTTGGACCTCATCCTGAGCCCTGGGAGGGGA-GGGGCACCATAGG-CCC-CCC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40856246 135 + 122973662 CATGCCATACATCTTCTCACCCAACCTGTGTGACAGAGGCCCCCTCCTGGGGCACAAGTCCCATACCTAAAGGGTCCTGTCCCAGTTGGGCCTCATCCTGGGCCCTGGGAGGGGAGGGGGCATCTTGGG-CCC-CCC
i nomLeu3.chr1a                C 0 M 179
s rheMac8.chr15                   549973 133 - 111343173 CATGCCATACATCTTCTCACCCAACCTGTGGGACAGAGGCCCCCTCCTGGGGAATAAGATCCATACCTAAAGGGTCCTGGCCCAGTCGGGCCTCATCTTGCGCCCTGGGAGGTGA-AGGGCACCATGGG-CCC-CC-
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111142077 132 - 111193037 CATGCCATACATCTTCTCACCCGATCTTTGTGACAGAGGCCACCTTCTGGGGCACAAGTCCCATACCTAAAGGGTCCTATCTCAGTC-GGCCTCATCCTGAGCCCTGGGATGGGA-GAGGCACCATGCA-CCC-CC-
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26452761 133 +  28977278 CATGCCATACATCTTCTCACCCAACCTGTGGGACAGAGGCCCCCTCCTGGGGAATAAGATCCATACCTAAAGGGTCCTGGCCCAGTCGGGCCTCATCTTGCACCCTGGGAGGCGA-AGGGCACCATGGG-CCC-CC-
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5648959 133 +   8072957 CATGCCATACATCTTCTCACCCAACCTGTGGGACAGAGGCCCCTTCCTGGGGAATAAGATCCATACCTAAAGGGTCCTGGCCCAGTCGGGCCTCATCTTGCGCCCTGGGAGGCGA-AGGGCACCATGGG-CCC-CC-
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3739536 134 - 108555830 CATGCCATACATCTTCTCACCCAACCTGTGGGACAGAGGCCCCTTCCTGGGGAACAAGATCCATATCTAAAGGGTCTTGACCCAGTCGGGCCTCATCCTGGGCCCTGGGAGGGGA-GAGGCACTGTGGG-CCCTCC-
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          164992 134 +   1331228 CATGCCATACATCTTCTCACCCAACCTGTGGGACAGAGGCCCCCTCCTGGGGAACAAGATCCATATCTAAAGGGTCTTGACCCAGTCGGGCCTCATCCTGGGCCCTGGGAGGGGA-GAGGCACTGTGGG-CCCTCC-
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           54411 130 +    168452 CATGCCATACATCTTCTCACCCAAACTTTGTGACAGAGGCCACCTTCTAGGGCACAAGTCCCATACCTAAAGGGTCCT----CAGTCAGGCCTCATTCTGAGCCCTGGGATGGGA-GAGGCACCATGCA-CCCCCC-
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130420236 131 - 210400635 GCAAGCATACA---TCTCAGCCAACCTGTGGGACAGAGGACAATTCCTGGGGCACAAGTGTTACACCTAAAGGGTCCTATCCCAGTTAGGTCTCATTCTGAGCCCTGAAAGGGGA-GGGGCACCATGGGCCCC-CC-
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64679918 132 -  72162052 CAAGTCATACATCTTCTCACCCAGCCTGTGAGACAGAAGCCTTCTTTTAGGGTACAAGTCCCAAACATAAAGGGTCCTGGCCTGGTCAGG-CTCCTCCTGAGCTCTGGGAGAGGA-GGGGCACCAAGGG-TCC-CC-
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1097488 132 +   1314817 CATGTCATACATCTTCTCACCCAACCTGTGAGACAGAAGCCTTCTTTTAGGGCACAAGTCCCAAACCTAAAGGGTCCTGGCCTGGTCAGG-CTCATCCTGAGCTCTGGGAGAGGA-GGGACACCAAGGG-TCC-CC-
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6455580 132 -   6597006 CATGTCATACATCTTCTCACCCAACCTGTGAGACAGAAGCCTTCTTTTAGGGCACAGGTCCCAAACCTAAAGGGTCCTGGCCTGGTCAGG-CTCATCCTGAGCTCTGGGAGAGGA-GGGGCACCAAGGG-TCC-CC-
i aotNan1.NW_018488791v1       I 90 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I

a score=874055.000000
s hg38.chr14_GL000009v2_random     59331 117 +    201709 T-GCAGCAGCCAGGATTACCACCCAGGGGACTCGGCCTTCTGTGGCCCTGGCCAGACTTAGAATTTGGCCCAAGACAAA-----CTTACTCGGAGCAGCTTCTCAGTACCTGGGGCCTGTGCA
s panTro5.chr9                  41738901 114 + 116767853 T----GCAGCCAGGATTACCACCCAGGGGACTTGGCCTTCTGTGGCCCTGGCCAGACTTAGAATTTGGCCCAAGACAAG-----CTTACTCAGAGCGGCTTCTCAGTACCTGGGGCCTGTGCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96092364 114 - 114479721 T----GCAGCCAGGATTACCACCCAGGGGACTTGGCCTTCTGTGGCCCTGGCCAGACTTAGAATTTGGCCCAAGACAAG-----CTTACTCAGAGCGGCTTCTCAGTACCTGAGGCCTGTGCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25170 121 +     53730 T-GCAGCAGCCAGGATTACCACGCAGGGT-CTTGGCCTTTTGTGGCCCTGGCCAGACTTAGAATTTGGCCCAAGACAAGACAAACTCACTCAGAGCAGCTTGTCAGTACCCGGGGCCTGTGTA
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   550106 122 - 111343173 A-GCAGCAACCAGGATTACCACCCAGGGGACTCAGCCTTCTATGGCCCTGGCCAGACTTAGAATTTGGCCCAAGACAGGACAAGCTTACTCAGAGCAGCCTGTCAGTACCCAGGGCCTGTGCA
i rheMac8.chr15                C 0 I 527
s macFas5.chr13                111142209 123 - 111193037 CTGCAGCAGCCAGGATTACCACCCAGGGGACTCATCCTTCTGTGGCCCTGGCCAGACTTAGAATTTGGCCCAAGACAGGACAAGCTCAGTCAGAGCAGCTTGTCAGTACCCAGAGTCTATGTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26452894 122 +  28977278 A-GCAGCAACCAGGATTACCACCCAGGGGACTCAGCCTTCTATGGCCCTGGCCAGACTTAGAATTTGGCCCAAGACAGGACAAGCTTACTCAGAGCAGCCTGTCAGTACCCAGGGCCTGTGCA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5649092 122 +   8072957 A-GCAGCAACCAGGATTACCACCCAGGGGACTCAGCCTTCTATGGCCCTGGCCAGACTTAGAATTTGGTCCAAGACAGGACAAGCTCACTCAGAGCAGCCTGTCAGTACCCAGGGCCTGTGCA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3739670 122 - 108555830 A-GCAGCAGCCAGGATTACCACCCAGGGGACTCATCCTTCTGTGGCCCTGGCCAGACTTAGAATTTGGCACAAGACAGGACAAGGTCACTCAGCGCAGCTTGTTAATACCCACGGCCTATGCA
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          165126 122 +   1331228 A-GCAGCAGCCAGGATTACTACCCAGGGGACTCAGCCTTCTGTGGCCCTGGCCAGACTTAGAATTTGGCACAAGACAGGACAAGCTCACTCAGCGCAGCTTGTTAATACCCAGGGCCTGTGCA
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           54541 122 +    168452 T-GCAGCAGCCAGGATTACCACCCAGGGGACTCATCCTTCTGTGGCCCTGGCCAGACTTAGAATTTGGCCCAAGACAAGACAAGCTCAGTCAGAGCAGCTTGTCAGTACCCAGGGCCTATGTA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130420367 122 - 210400635 -AGCAGCATCCAGGATTACCATCCAAAGGACTCAGCCTTCTGTGACCCTGGCCAGACTTAGAATTTGGCCCAACACAGGACAACCTTACTCAGAGCACTGTGTCGGTATGTGGGGCCTGTGCA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64680050 122 -  72162052 -AGCAGCAGCCAGGATTACAACACAGGGGACCAAGCACTCTGTGGCCCGGGCCAGACTGAGAATTCAGGCCAAGACAGAACAAGCTCACTTGGAGCAGGGTGTCAATACCTGGGGTCTGTGCA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1097620 122 +   1314817 -AGGAGCAGCCAGGATTACAACACAGGGGACCAAGCACCCTGTGGCCCTGGCCAGACTTAGAATTCAGGCCAAGACAGAACAAGCTCACTTGGAGCAGGATGTCAATACCCGGGGTCTGTGCA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6455712 122 -   6597006 -AGCAGCAGCCAGGATTACAACACAGGGGACCAAGCATTCTGTGGCCCTGGCCAGACTTAGAATTCAGGCCAAGACAGAACAAGCTTACTTGGAGCAGGGTGTAAATACCCCAGGCCTGTGCA
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e nomLeu3.chr1a                 40856381 179 + 122973662 M

a score=830456.000000
s hg38.chr14_GL000009v2_random     59448 115 +    201709 TTCCAGGCAAGGCCAAGCTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGTGCCAGGAGCAGGTGGAGCAGTCACCAACCTCACCCACTC-AAGGAAACAGGGATGGCCAGA
s panTro5.chr9                  41739015 115 + 116767853 TGTGAGGCAATGCCAAGCTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGTGCCAAGAGCAGGTGGAGCAGTCACCAACCTCACCCACTC-AAGGAAACAGGGATGGTCAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96092478 115 - 114479721 TGTCAGGCAATGCCAAGCTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGTGCCAAGAGCAGGTGGAGCAGTCACCAACCTCACCCACTC-AAGGAAACAGGGATGGTCAGG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25291 115 +     53730 TGCCAGGCGAGGCCAAGCTGGCTCAAAGAGCAACCAGTTACCTCTGCAAGGGTGTGCCAGGAGCAGGTGGACCAGCCACCAACCTC-CCCACTCAAAGGAAACAGGGATGGCCAGG
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111142332 115 - 111193037 TGCCAGACATGGCCACGCTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGTGCCAGGAGCAGGTGGACCAGCCACCAACCTCATCCACTC-AAGTAAACAGAGATGGCCAGC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26453016 115 +  28977278 TGCCAGGCAAGGCCAAGCTGGCTCAAAGAGAAACCAGCCACCTTTGCAAGGGTATGCCTGGAGAAGGTGGACCAGCCACCAACCTCACCCCCTT-AAGGAAGCAGGGGTGGCCAGG
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5649214 115 +   8072957 TGCCAGGCAAGGCCAAGCTGGGTCAAAGAGAAACCAGCCACCTTTGCAAGGGTGTGCCTGGAGAAGGTAGACCAGCCACCAGCCTCACCCCCTT-AAGGAAGCAGGGGTGGCCAGG
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3739792 115 - 108555830 TGCCAGGCAAGGCCAAGCTGACTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGTGCCTGGAGCAGGCAGACCAGCCACCAGCCTCACCCACTC-AAGGAAGCAGGGGTGGCCAGG
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          165248 115 +   1331228 TGCCAGGCAAGGCCAAGCTGACTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGTGCCTGGAGCAGGTAGACCAGCCACCAGCCTCACCCACTC-AAGGAAGCAGGGGTGGCCAGG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           54663 115 +    168452 TGCCAGGCATGGCCAAGCTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGTGCCAGGAGCAGGTGGACCAGCCACCAACCTCACCCACTC-AAGACAACAGGGATGACCAGG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130420489 108 - 210400635 TGTCAGGCAAGGTCAAGTTGGCTCAAAGACCAACCAGCCACCTCTGCAAAGGTGTGCCTGGA-------CACCAGCCACCAACCTCACCCACTC-AAGGAAGCAGGGGTGTCTAGG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64680172 115 -  72162052 TGCCAGGCAAGGCCAAGCTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGTGCCTGGAGCAGGTGGACCAGCCACCAACCTCATCCACTC-GAGGAAGCAGGGGTGGCCAGG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1097742 115 +   1314817 TGCCAGGCAAGGCCAAGCTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGTGCCTGGAGCAGGTGGACCAGCCACCAACCTCATCTACTC-AAGGAAGCAGGGGTGGCCAGG
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6455834 115 -   6597006 TGCCAGGCAAGGCCAAGCTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGTTGTGCCTGGAGCAGGTGGACCAGCCACCAACCTCATCCACTC-AAGGAAGCAGGAGTGGCCAGG
i aotNan1.NW_018488791v1       C 0 C 0
e rheMac8.chr15                   550228 527 - 111343173 I
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e nomLeu3.chr1a                 40856381 179 + 122973662 M

a score=955905.000000
s hg38.chr14_GL000009v2_random     59563 118 +    201709 TTCCCACAGTCTGAGTGACCACAACCTGACAGCTGATGGAGCGGAGGCCTGAGGAAAAGCAGATGGCACTGGGGCTCCACTTCCAGGGCAGAATAACTGATTTACCCTGACTGGCAGG
s panTro5.chr9                  41739130 118 + 116767853 TTCCCACAGTCTGAGTGACCACCACCTGAGAGCTGATGGAGTGGAGGCCTGAGGAAAAGCAGATGGCACTGGGTCTCTACCTCCAGGGCAGAATAACTGATTTACCCTGACTGGCAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96092593 118 - 114479721 TTCCCACAGTCTGAGTGACCACCACCTGAGAGCTGATGGAGTGGAGGCCTGAGGAAAAGCAGATGGCACTGGGTCTCTACCTCCAAGGCAGAATAACTGATTTACCCTGACTGGCAGG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25406 118 +     53730 TTCCCACAGCCTGAGTTACCACCACCTGACAGCTGATGGAGTGGAGGCCTGAGGAAAAGCAGATGGCACTGGGGCTCTACCTCCAGAGCAGAATAACTGATTTACCCTGACTGGCAGG
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   550755 118 - 111343173 TTCCCACAGCCTGAGTAGCTGCCACCTGATGGCTGATGGAGCGGAGGCCTGAGGAAAAGCAGATGGCACTGGGGCCCTACCTCCAGGGAGGAATAACTGATTTACCCTGACTGGCAGC
i rheMac8.chr15                I 527 C 0
s macFas5.chr13                111142447 118 - 111193037 TTCTCACACCCTGAGTGACCACCACCTGACAGCTGATGAAGTGGAGGCCTGAGGAAAAGCAGATGGCACTGGGGCCCTGCTTCCAGGGCAGAATAACTGATTGACCCTGACTGGCAGT
i macFas5.chr13                C 0 I 1596
s macNem1.NW_012012133v1        26453131 118 +  28977278 TTCCCACAGCCTGAGTAGCTGCCACCTGATGGCTGATGGAGCGGAGGCCTGAGGAAAAGCAGATGGCACTGGGGCCCTACCTCCAGGGAGGAATAACTGATTTACCCTGACTGGCAGC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5649329 118 +   8072957 TTCCCACAGCCTGAGTAGCTGCCACCTGATGGCTGATGGAGCGGAGGCCTGAGGAAAAGCAGATGGCACTGGGGCCCTACCTCCAGGGAGGAATAACTGATTTACCCTGACTGGCAGC
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3739907 117 - 108555830 TTCCCACAGCCTGAGTAGCTGCCACCTGATGGCTGATGGAGCGGAGGCCTGAGGAAAACCAGATGGCACTGGGGCCCTACCTCCAGGGCAGAATTACTGATTTACCCTGA-GGGCAGC
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          165363 116 +   1331228 -TCCCGCAGCCTGAGTAGCTGCCATCTGATGGCTGATGGAGCGGAGGCCTGAGGAAAAGCAGATGGCACTGGGGCCCTACCTCCAGGGCAGAATTACTGATTTACCCTGA-GGGCAGC
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           54778 118 +    168452 TTCCCACACCCTGAGTGACCACCACCTGCCAGCTGATGAAGTGGAGGCCTGAGGAAAAGCAGATGGCACTGGGGCCCTACTTCCAGGGCAGAATAACTGATTGACCCTGACTGGCAGT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130420597 118 - 210400635 TTCCCACAGCTTGAGTGGCCACCACCTGATGGCTGATGGAGTGGAGGCCTGGGGAAAATCAAATGGCACTGGGGCCCTACCTCTAAGGCAGAATAACTGATTTAGCCTGACTAGCAGT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64680287 118 -  72162052 TTCCCACACCCTGAGTGGCTGCCACCTGATGTCTGAGGGAGCAGAGACCTGAGGCAAAGCAGATGGCACTGGGGTCCTACCTTCAGGGTAGAAGAGCTGATTTACCCTGACTGGCAGC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1097857 118 +   1314817 TTCCCACACCCTGAGTGGCTGCCACCTGATGTCTGATGGAGCAGAGGCCTGATGCAAAACAGATGGCACTGGGGCCCTACCTTCAGGGTAGAAGAGCTGATTTACCCTGACTGGCAGC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6455949 118 -   6597006 TTCCTACACCCTGAGTGGCTGCCACCTGATGTCTGATGGAGCAGAGGCCTGAGGCAAAGCAGATGGCACTGGGGCCCTACCTTCAGGGTAGAAGAGCTGATTTACCCTGACTGGCAGC
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e nomLeu3.chr1a                 40856381 179 + 122973662 M

a score=280165.000000
s hg38.chr14_GL000009v2_random     59681 35 +    201709 GAGTGACGTTGGTGGCTGGTCCACTGGCTCCTGGC
s panTro5.chr9                  41739248 35 + 116767853 GAGTGACATTGGTGGCTGGTCCACTGGCTCCTGGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96092711 35 - 114479721 GAGTGACGTTGGTGGCTGGTCCACTGGCTCCTGGC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25524 35 +     53730 GAGTAAGGTTGGTGGCTGGTCCACCGGCTCCTGGC
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   550873 35 - 111343173 GAGTGAGGTTGGTGGCTGATCTACCTGCTCCTGGC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111144161 35 - 111193037 GAGTGAGGTTGGTGGCTGGTCCACCTGCTCCTGGC
i macFas5.chr13                I 1596 C 0
s macNem1.NW_012012133v1        26453249 35 +  28977278 GAGTGAGGTTGGTGGCTGATCTACCTGCTCCTGGC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5649447 35 +   8072957 GAGTGAGGTTGGTGGCTGATCCACCTGCTCCTGGC
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3740024 35 - 108555830 GAGTGAGGTTGGTGGCTGGTCCACCTGCTCCTGGC
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          165479 35 +   1331228 GAGTGAGGTTGGTGGCTGGTCCACCTGCTCCTGGC
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           54896 34 +    168452 GAGTGA-GTTGGGGACTCTTCCACCTGCTCCTGGC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130420715 35 - 210400635 GAGTGAGATTGGTGGCTGGTACACTTGCTCCTGGC
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64680405 35 -  72162052 AAATGAGGTTGGTGGTTGGTCCACCTACTCCTGGC
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1097975 35 +   1314817 AAGCGAGGTTGGTGGTTGGCCCACCTACTCCTGGC
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6456067 35 -   6597006 AAGTGAGGTTGGTGGTTGGTCCACCTACTCCTGGC
i aotNan1.NW_018488791v1       C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e nomLeu3.chr1a                 40856381 179 + 122973662 M

a score=1235966.000000
s hg38.chr14_GL000009v2_random     59716 124 +    201709 ACACCATTGCAGAGGTGGGTGGTTGCTCTTTGAGCCAGCTTGGCTTTGCCTGGCATGCACAGGCCTCAGTGCAACA-AATGTGCTGCAAATGGAGCCACATAGAGGAAATGAGCAGCAGGCTCAG
s panTro5.chr9                  41739283 124 + 116767853 ACACTCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCTTTGCCTGGCATGCACAGGCCCCAGTGCAACA-AATGTGCTGCAAATGGAGCCACATAGAGGAAAGGAGCAGCAGGCTCAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96092746 124 - 114479721 ACACTCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCTTTGCCTGGCATGCACAGGCCCCAGTGCAACA-AATGTGCTGCAAATGGAGCCACATAGAGGAAAGGAGCAGCAGGCTCAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25559 124 +     53730 ACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGTCAGCTTGGCCTTGCCTGGCATGCACAGGCCTCAGTGCAACA-AATGTGCTGCAAATGGAGCCACATAGAGGAAATGAGCAGCAGGCTCAG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40856563 124 + 122973662 ACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCCTGCCTGGCATGCACAGGCCTCAGTGCAACA-ACTGTGCTGCAAATGGAGCCACATAGAGGAAATGAGCAGCAGGCTCAG
i nomLeu3.chr1a                M 179 C 0
s rheMac8.chr15                   550908 124 - 111343173 ACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAGGCCTCAGTGCAACA-ACTATGCTACAAATGGAGCCACATAGAGAAAATGAGCAGCAGGCTCAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111144196 124 - 111193037 ACACCCGTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAACTTGGCCTTGCCCGGCATGCGGAAGCCTCAGTGCAACA-AACGTGCTGCACATGGAGCCACGTAAAGGAAATGAGCAGCAGGCTCAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26453284 124 +  28977278 ACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAGGCCTCAGTGCAACA-ACTGTGCTACAAATGGAGCCACATAGAGAAAATGAGCAGCAGGCTCAG
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5649482 124 +   8072957 ACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCACGCACAGGCCTCAGTGCAACA-ACTATGCTACAAATGGAGCCACATAGAGAAAATGAGCAGCAGGCTCAG
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3740059 124 - 108555830 ACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGTTTGGCCTTGCCTGGCATGCACAGGCCTCAGTGCAACA-ACTGTGCTGCAAATGGAGCCACATAGAGGATATGAGCAGCAGGCTCAG
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          165514 124 +   1331228 ACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGTTTGGCCTTGCCTGGCATGCACAGGCCTCAGTGCAACA-ACTGTGCTACAAATGGAGCCACATAGAGAAAATGAGCAGCAGGCTCAG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           54930 124 +    168452 ACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAGGCCTCAGTGCAACA-ACTGTGCTGCTAATGGAGCCACAGAGAGGATATGAGCAGCAGGCTCAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130420750 124 - 210400635 ACACCCTTGCAGAAGTCGTTGGTTGCTGTTTGAGCCAGCTTGGCCTTGCCTGGTATGCACGGGCCTCAGTGCAACA-ACTGTGCTGTAAATGGAACCACATCAAGGTCATGAGCTGCAGACTCAG
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64680440 123 -  72162052 ACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAGACCCCAGTGCAACAGACTGTGCTGCAAAAGGAGCCACACGGAGGAAATGAGCAGCAGGCTC--
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1098010 123 +   1314817 ACACCCTTGCAG--GTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAGACCCCAGTGCAACAGACTATGCTGCAAAAGGAGCCACACAGAGGAAATGAGCAGCAGGCTCAG
i cebCap1.NW_016107851v1       C 0 I 76
s aotNan1.NW_018488791v1         6456102 125 -   6597006 ACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAGACCCCGGTGCAACAGACTGTGCTGCAAAAGAAGCCACATAGAGGAAATGAGCAGCAGGCTCAG
i aotNan1.NW_018488791v1       C 0 I 76
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I

a score=716308.000000
s hg38.chr14_GL000009v2_random     59840 110 +    201709 AACTGGGGTGTGTGCCGCCTTTGGGGCTCCAGTCCAAGCATCGGGGCTTCTACAGCACTGTGGGCTTCTCGGGTGCCAAGAGGCAGACCACAGGCCATCTTGAGGAGGAC
s panTro5.chr9                  41739407 110 + 116767853 AGGTGGGGTGTGTGCCACCTTTGGGGCTCCAGTCCAAGCATCGGGGCTTCTACAGCACTGTGGGCTTCTCGGGTGCCAAGAGGCAGACCACAGGCCATCTTGAGGAGGAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96092870 110 - 114479721 AGGTGGGGTGTGTGCCACCTTTGGAGCTCCAGTCCATGCATTGGGGCTTCTACAGCACTGTGGGCTTCTCAGGTGCCAAGAGGCAGACCACAGGCCATCTTGAGGAGGAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25683 110 +     53730 GAGCGGGGTGTGCACTGCCTTTGGGGCTCCATTCCATGCATCAGGGCTTCTACAGCACTGTGGGCTTCTTGGATGCCAAGAGGCAGACCACAGGCCATCTTGAGAAGGAC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40856687 110 + 122973662 GAGCAGGGTGTGCGCTGCCTTTGGGGCTCCAGTCCATGCATCAGGTCCCCTACAGCACTGTGGGCTTCTTGGGTGCCAAGAGGCAGACCACAGGCCATCTTGAGGAGGAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551032 110 - 111343173 GAGCAGGGTGTGCGCTGCCTTTGGGGCTCTGGTCCATGCATCAGGGCTCCTACAGCACTGTGGGCTTCTTTGGTGCCAAGAGGCAGACCACAAACCATCTTGAGGAGGAC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111144320 110 - 111193037 GAGCAGACTGTGTGCTGCCTTTGGGGCTCCAGTCAGTGCCTCAGGCCTCGAATGGCAATGCGTGCTTGTTGGTTGCCAAGAGGCGGACCACAGGCCATCTTGAGGAGCAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26453408 110 +  28977278 GAGCAGACTGTGCGCTGCCTTTGGGGCTCCGGTCCATGCTTCAGGGCTCCTACAGCACTGTGGGCTTCTTTGGTGCCAAGAGGCAGACCACAAACCATCTTGAGGAGGAC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5649606 110 +   8072957 GAGCAGGGTGTGCACTGCCTTTGGGGCTCCAGTCCATGCTTCAGGGCTCCTACAGCACTGTGGGCTTCTTTGGTGCCAAGAGGCAGACCACAAGCCATCTTGAGGAGGAC
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3740183 110 - 108555830 GAGCAGGGTGTGTGCTGCCCTTGGGGCCCCAGTCCATGCTTCAGGGCTCCTACAGCACTGTGGGCTTCTTGGGTGCCAACAGGCAGACCACAGGCCATCTTGAGGAGGAC
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          165638 110 +   1331228 GAGCAGGGTGTGTGCTGCCCTTGGGGCCCCAGTCCATGCTTCAGGGCTCCTACAGCACTGTGGGCTTCTTGGGTGCCAAGAGGCAGACCACAGGCCATCTTGAGGGGGAC
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           55054 110 +    168452 GAGCAGGCTGTGCGCTGCCTTTGGGGCTCCAGTCCATGCATCAGGGCTCCTACAGCACTGTGGGCTTCTTGGGTGCCAAGAGGCAGACCACAGGCCATCTTGAGGAGGAC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130420874 110 - 210400635 GAGCAGGGTGTGTGCTGCCTTTGGGGCTCCAGTCCATGCATCAGAGCTCGTACAGCACTGCAGGCTTCTTGGGTGCCAAGAGGCAGACGACAGGCCATCTTGAGGAAGAC
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64680563  70 -  72162052 -AGCAGGGTATGCACTGCC-TCAGGGCTTCAGTTCATGCATCAGGGCTT--------------------------------------CCACAGGCCATTTTGAGGAAGAC
i saiBol1.JH378105             C 0 C 0
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e aotNan1.NW_018488791v1         6456227  76 -   6597006 I
e cebCap1.NW_016107851v1         1098133  76 +   1314817 I

a score=11656.000000
s hg38.chr14_GL000009v2_random     59950 4 +    201709 TCTG
s panTro5.chr9                  41739517 4 + 116767853 TCTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96092980 4 - 114479721 TCTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25793 4 +     53730 TCTA
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111144430 4 - 111193037 TCTG
i macFas5.chr13                C 0 C 0
s chlSab2.chr12                  3740293 4 - 108555830 TCTG
i chlSab2.chr12                C 0 I 1
s manLeu1.NW_012106397v1          165748 4 +   1331228 TCTG
i manLeu1.NW_012106397v1       C 0 I 1
s colAng1.NW_012121088v1           55164 4 +    168452 TCTG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                  79978659 4 + 210400635 TTTG
i calJac3.chr1                 n 0 C 0
e rheMac8.chr15                   551142 0 - 111343173 C
e papAnu3.chrUn_NW_003903855v1    141208 10755 -    180295 I
e aotNan1.NW_018488791v1         6456227 76 -   6597006 I
e cebCap1.NW_016107851v1         1098133 76 +   1314817 I
e saiBol1.JH378105              64680633 0 -  72162052 C
e cerAty1.NW_012000030v1         5649716 0 +   8072957 C
e macNem1.NW_012012133v1        26453518 0 +  28977278 C
e nomLeu3.chr1a                 40856797 0 + 122973662 C

a score=494966.000000
s hg38.chr14_GL000009v2_random     59954 137 +    201709 GTAAGAGCTTCCTTGTGTACGTGGATGATGTCCAGAATGTTGGCCTGGTGTCCCTGAGACAGCACTAACAAGTCCATGACTGGGTCCAGATCCTGCCTGGGCTGATGGGCAAAGAGCTCACTGACAGTGTGGAAGGC
s panTro5.chr9                  41739521 137 + 116767853 GTAAGAGCTTCCTTGGGTATGTGGATGATGTCCAGAATGTTGGCCTGGTGTCCTTGAGACAGCACTAACAGGTCCATGACTGGGTCCAGGTCCTGCCTGGGCTGATTGGCAAACAGCTCACTGACAGTGTGGAAGGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96092984 137 - 114479721 GTAAGAGCTTCCTTGGATATGTGGATGATGTCCAGAATTTTGGCCTGGTGTCCCTGAGACAGCACTAACAGGTCCACAACTGGGTGCAGGTCCTGCCTGGACTGATTGGCAAAGAGCTCACTGACAGTGTGGAAGGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25797 137 +     53730 GTAAGAGCTTACTTGGGTATGTGGATGATGTCCAGGATGTTGGCCTGGTGTCCCTGAGACAGCATTAACAGGTCCGTGACTGGGTCCAGGTCCTGCCTGGGCTGATTGGCACAGAGCTCACTGACAGTGTGGAAGGC
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111144434 137 - 111193037 GTAAGAGCTTCCTTGTGTATGTGGATGATGTCCAGGATGTTGGCCTGGTGTCCCTGAGGCAGCACTAACAGGTCCATGACTGGGTCCAGGTCCTGCCTGGGCTGATTGGCGAAGATCTCCCTGGCAGCATTGAAGGC
i macFas5.chr13                C 0 C 0
s papAnu3.chr13                 40415979 137 - 128036923 GTAAGAGCTTCCTTGTGTATGTGGATGATGTCCAGGATGTTGGCCTGGTGTCCCTGAGGCAGCACTAACAGGTCCATGACTGGGTCCAGGCCCTGCCTGGGCTGATTGGCAAAGATCTCCCTGGCAGCATTGAAGGC
i papAnu3.chr13                I 11290 N 0
s chlSab2.chr12                104814985 137 + 108555830 GTAAAAGCTTCCTTGTGTATGTGGATGATGTCTAGGATGTTGGCCTGGTGTCCCTGAGACATCCCTAACAGGTCCATGACTGGGTCCAGGTCCTGCCTGGGTTGATTGGCAAAGAGCTCACTGACGGTGTTGAAGGC
i chlSab2.chr12                n 1 C 0
s manLeu1.NW_012106397v1         1164924 137 -   1331228 GTAAAAGCTTCCTTGTGTATGTGGATGATGTCTAGGATGTTGGCCTGGTGTCCCTGAGACAGCCCTAACAGGTCCATGACTGGGTCCAGGTCCTGCCTGGGTTGACTGGCAAAGAGCTCACTGATGGTGTTGAAGGC
i manLeu1.NW_012106397v1       n 1 C 0
s colAng1.NW_012121088v1           55168 137 +    168452 GTAAGAGCTTCCTTGTGTATGTGGATGATGTCCAGGATGTTGGCCTGGTGTCCCTGAGGCAGCACTAACAGGTCCATGACTGGGTCCAGGTCCTACCTGGGCTGATTGGCGAAGATCTCCCTGGCAGCGTTGAAGGC
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                  79978663 136 + 210400635 GTAAGAGGCTTCTTGTGTACGTGGATGATGTCTAGGATGTTGACTTGGTGTCCCTGAGA-AGCACTAACGGGTCCATGACTGGGTCCAAGTCCTGCCTGGGCTGACTGGCAAAGAGCTCACTGATGGTGATAAAGGC
i calJac3.chr1                 C 0 C 0
e rheMac8.chr15                   551142   0 - 111343173 C
e aotNan1.NW_018488791v1         6456227  76 -   6597006 I
e cebCap1.NW_016107851v1         1098133  76 +   1314817 I
e saiBol1.JH378105              64680633   0 -  72162052 C
e cerAty1.NW_012000030v1         5649716   0 +   8072957 C
e macNem1.NW_012012133v1        26453518   0 +  28977278 C
e nomLeu3.chr1a                 40856797   0 + 122973662 C

a score=6552.000000
s hg38.chr14_GL000009v2_random     60091 2 +    201709 AT
s panTro5.chr9                  41739658 2 + 116767853 AT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093121 2 - 114479721 AT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25934 2 +     53730 AT
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111144571 2 - 111193037 AT
i macFas5.chr13                C 0 C 0
s chlSab2.chr12                104815122 2 + 108555830 AT
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1         1165061 2 -   1331228 AT
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           55305 2 +    168452 AT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                  79978799 2 + 210400635 AT
i calJac3.chr1                 C 0 n 0
e rheMac8.chr15                   551142 0 - 111343173 C
e aotNan1.NW_018488791v1         6456227 76 -   6597006 I
e cebCap1.NW_016107851v1         1098133 76 +   1314817 I
e saiBol1.JH378105              64680633 0 -  72162052 C
e cerAty1.NW_012000030v1         5649716 0 +   8072957 C
e macNem1.NW_012012133v1        26453518 0 +  28977278 C
e nomLeu3.chr1a                 40856797 0 + 122973662 C

a score=19658.000000
s hg38.chr14_GL000009v2_random     60093 10 +    201709 CTATGGTGAA
s panTro5.chr9                  41739660 10 + 116767853 CTATGGTGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093123 10 - 114479721 CTATGGTGAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25936 10 +     53730 CTATGGTGAA
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111144573 10 - 111193037 TGGTGGTGAA
i macFas5.chr13                C 0 C 0
s chlSab2.chr12                104815124 10 + 108555830 CTCTGGTGAA
i chlSab2.chr12                C 0 n 0
s manLeu1.NW_012106397v1         1165063 10 -   1331228 CTCTGGTGAA
i manLeu1.NW_012106397v1       C 0 n 0
s colAng1.NW_012121088v1           55307 10 +    168452 CGGTGGTGAA
i colAng1.NW_012121088v1       C 0 C 0
e calJac3.chr1                  79978801  0 + 210400635 I
e rheMac8.chr15                   551142  0 - 111343173 C
e aotNan1.NW_018488791v1         6456227 76 -   6597006 I
e cebCap1.NW_016107851v1         1098133 76 +   1314817 I
e saiBol1.JH378105              64680633  0 -  72162052 C
e cerAty1.NW_012000030v1         5649716  0 +   8072957 C
e macNem1.NW_012012133v1        26453518  0 +  28977278 C
e nomLeu3.chr1a                 40856797  0 + 122973662 C

a score=801.000000
s hg38.chr14_GL000009v2_random     60103 5 +    201709 GT-GGA
s panTro5.chr9                  41739670 6 + 116767853 GTGGGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093133 5 - 114479721 GT-GGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25946 6 +     53730 GTGGTG
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111144583 5 - 111193037 GT-GGC
i macFas5.chr13                C 0 I 1
s colAng1.NW_012121088v1           55317 5 +    168452 GT-GGC
i colAng1.NW_012121088v1       C 0 I 1
e calJac3.chr1                  79978801 0 + 210400635 I
e rheMac8.chr15                   551142 0 - 111343173 C
e aotNan1.NW_018488791v1         6456227 76 -   6597006 I
e cebCap1.NW_016107851v1         1098133 76 +   1314817 I
e saiBol1.JH378105              64680633 0 -  72162052 C
e manLeu1.NW_012106397v1         1165073 0 -   1331228 I
e chlSab2.chr12                104815134 0 + 108555830 I
e cerAty1.NW_012000030v1         5649716 0 +   8072957 C
e macNem1.NW_012012133v1        26453518 0 +  28977278 C
e nomLeu3.chr1a                 40856797 0 + 122973662 C

a score=31537.000000
s hg38.chr14_GL000009v2_random     60108 7 +    201709 TCTATGT
s panTro5.chr9                  41739676 7 + 116767853 TCTATGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093138 7 - 114479721 CCTATGT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25952 7 +     53730 TCTATGT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40856797 7 + 122973662 TCTATGT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551142 7 - 111343173 TCTATGC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111144589 7 - 111193037 TCTATGT
i macFas5.chr13                I 1 C 0
s macNem1.NW_012012133v1        26453518 7 +  28977278 TCTATGC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5649716 7 +   8072957 TCTATGC
i cerAty1.NW_012000030v1       C 0 C 0
s colAng1.NW_012121088v1           55323 7 +    168452 TCTATGT
i colAng1.NW_012121088v1       I 1 C 0
s calJac3.chr1                 130420984 7 - 210400635 TTCATGT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64680633 7 -  72162052 TTCATAC
i saiBol1.JH378105             C 0 C 0
e aotNan1.NW_018488791v1         6456227 76 -   6597006 I
e cebCap1.NW_016107851v1         1098133 76 +   1314817 I
e manLeu1.NW_012106397v1         1165073 0 -   1331228 I
e chlSab2.chr12                104815134 0 + 108555830 I

a score=5362.000000
s hg38.chr14_GL000009v2_random     60115 1 +    201709 T
s panTro5.chr9                  41739683 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093145 1 - 114479721 T
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25959 1 +     53730 T
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40856804 1 + 122973662 T
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551149 1 - 111343173 T
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111144596 1 - 111193037 T
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26453525 1 +  28977278 T
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5649723 1 +   8072957 T
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3740298 1 - 108555830 T
i chlSab2.chr12                I 1 C 0
s manLeu1.NW_012106397v1          165753 1 +   1331228 T
i manLeu1.NW_012106397v1       I 1 C 0
s colAng1.NW_012121088v1           55330 1 +    168452 T
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130420991 1 - 210400635 C
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64680640 1 -  72162052 C
i saiBol1.JH378105             C 0 C 0
e aotNan1.NW_018488791v1         6456227 76 -   6597006 I
e cebCap1.NW_016107851v1         1098133 76 +   1314817 I

a score=2624919.000000
s hg38.chr14_GL000009v2_random     60116 301 +    201709 CAAGTGCAGAAAGGGCCCAATCTTGTAGATGAACCACACAGCCAGCTTCTGGATGCAGGTGCAGTGCCACA-TTGTTTGTCACTTCCTGATGTGCTCCACCAGCACTGAAGAGATAGCCTGGAGACAGGGCAAGAGGAAGGCTGAGAAGGATGAGATGGTGAGTGCCAGATTCTTCCTGGCCCTGAGCCCACCCCCAG--TGTGACACTCAACTTTTAGGCGTGGGAGAGCAAGATTGACGGCTTCAAGTGCTTCACC--AAGAAGATGGACAACAGGGCACTCAGCTCAACTTCACAGCCAATGA
s panTro5.chr9                  41739684 302 + 116767853 CAAGTGCAGAAAGGGCCCAATCTTGTAGATAAACCACACAGCCAGCTTCTGGGTGCAGTCACAGTGCCACATTTTTTTGTCATTTCCTGATGTGCCCTACCAGCACTGAAGAGACAGCCTGGAGACAGGGCAAGAGGAAGGCTGAGAAGAATGAGATGGTGAGTGCCAGATTCTTCCTGGCCCTGAGCCCACCCACAG--GGTGACACTCAACTTTTAGGAGTGGGAGAGCAAGATTGATGGCTTCAAGTGCTTCACC--AAGAAGATGGACAACAGGGCACTCAGCTTAACTTCATAGCCAATGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093146 301 - 114479721 CCATTGCAGAAAGGGCCCAATCTGGTAGATGAACCACACAGCCAGCTTCTGGGTGCAGGCACAGTGCCACA-TTTTTTGTCACTTCCTGATGTGCCCCACCAGCACTGAAGAGACAGCCTGGAGACAGTGCAAGAGGAAGGCTGAGAAGGATGAGATGGTGAGTGCCAGATTCTTCCTGGCCCTGAGCCCTCCCTCAG--GGTGACACTCAACCTTTAGGAGTGGGAGAGCAAGATTGATGGCTTCAAGTGCTTCACC--AAGAAGATGGACAACAGGGCACTCAGCTCAACTTCACAGCCAATGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           25960 299 +     53730 CAAGTGCAGAAAAGGCCCAATCTGGTGGATGAACCACACGGCCAGC-TCTGCATGCAGGCACAGTGCCACA--TTTTTGTCACTTCCTGATGCGCCCCACCAGCACTGAAGAGTTAGCCTGGAGACAGGGCAAGAGGAAGGCTGAGAAGGATGAGTTGATGAGTGCCAGATTCTTCCTGGCCCTGAGCCCACCCCCAG--GGCGACACTCAACCTTTAGGAGTGGGAGAGCAAGATTGACGGCTTCAAGTGCTTCACC--AAGAAGACGGACAACAGGGCACTCAGCTCAACTTCACAGCCAATGA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40856805 301 + 122973662 CAAGTGCAAAAAGGGCCCAATCTGGTAGATGAACCACACAGCCAGCTTCTGGGTGCAGGCACAGTGCCACA-TCTTCCGTCACTTCCTGATGTTCCCCACCAGTGCTGAAAAGACAGCCTGGAGACAGGGCAAGAGGAAGGCTGAGAAGGATGAGGTGGTGAGTTCCAGCTTCTTCCTGACCCTGAGCCCACCCCTAG--GGTGGCCCTCAACCTTTAGGAGTGGGAGAGCAAAACTGATGGCTTTGAGTGCTTCACC--AAGAAGATGGACAACAGGGCACTCAGCTCAACTTCACAGCCAATGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551150 300 - 111343173 CAAGTACAGAAAGGGCCCAGTCTGGTGGGTGAACCACACGGCCAGCTTCTGGGTGCGGGCACAGTGCCACA-TCTTCCATCACTTCCTGATGTGCCCCACCAGTGCTGAAGAGACAGCCTGGAGACAGGGCAAGAGGAAGGCTGAGAAGGATGAGATGGTGAATTCCAGCTTCTTCCTGATGCTGAGCCCACCTCCAA--GGTGG-GCTCAACCTTTAGAAGTGAGAGAGCAAGATTGATGGCTTTGAGTGCTTTACC--AGGAAGATGGACAACAGGGCACTCAGCTCAACTTCACAGCCAATGA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111144597 299 - 111193037 CAAGTGCAGAAAGGGCCCAGTCTGGTGGATGAACCACACGGCCAGCTTCTGGGTGTGGGCACGGTGCCACA-TCCTTTGTCACTTCCTGATGTTCCCCACCAGCACTGAAGAGACAGCGTGGAGACAGGGCAAGAGGAAGGCTGAGAAGGATGAGATGGTGAGTCCCAGATTCTTCCTGTCCCTGAGCCCACC-CTGA--GTGAC-CCTCAACCTTTAGGAATGGGAGAGCAAGATTGACAGCTTCAAGTACTTCACC--GAGAAGATAGACAACAGGGCACTCAGCTCAACTTCACAGCCAGTGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26453526 300 +  28977278 CAAGTACAGAAAGGGCCCAGTCTGGTGGGTGAACCACACGGCCAGCTTCTGGGTGCGGGCACAGTGCCACA-TCTTCCATCACTTCCTGATGTGCCCCACCAGTGCTGAAGAGACAGCCTGGAGACAGGGCAAGAGGAAGGCTGAGAAGGATGAGATGGTGAATTCCAGCTTCTTCCTGACGCTAAGCCCACCTCCAA--GGTGG-GCTCAACCTTTAGAAGTGAGAGAGCAAGATTGATGGCTTTGAGTGCTTTACC--AGGAAGATGGACAACAGGGCACTCAGCTCAACTTCACAGCCAATGA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5649724 301 +   8072957 CAAGTACAGAAAGGGCCCAGTCTGGTGGGTGAACCACACGGCCAGCTTCTGGGTGCAGGCACAGTGCCACA-TCTTCCATCACTTCCTGATGTGCCCCACCAGTGCTGAAGAGACAGCCTGGAGACAGGGCAAGAGGAAGGCTGAGAAGGATGAGATGGTGAATTCTAGCTTCTTCCTGACCCTCAGCCCACCTCCAA--GGTGGCCCTCAACCTTTAGAAGTGAGAGAGCAAGATTGATGACTTTGAGTGCTTTACC--AGGAAGATGGACAACAGGGCACTCAGCTCAACTTCACAGCCAATGA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3740299 299 - 108555830 CAAGTACAGAAAGGGCCCAATCTAGTGGATGAACCACACGGCCAGCTTCTGGGTGCGGGCACAGTGCCACA-TCTTCCATCACTTCCTGATGTGCCCCACCAGCACTGAAGAGACAGCCTGGAGACAGGGCAAGAGGAAGGCTGAGAAGGATGAGATGGTGAGTCCCAGATTCTTCCTGTCCCTGAGCCCACCCCGAG----TGACCCTCAACCTTTAGGAATGGAAGAGCAAGACTGACAGCTTCAAGTACTTCACC--AAGAAGATAGACAACAGGGCACTCAGCTCAACTTCACAGCCAGTGA
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          165754 297 +   1331228 CAAGTACAGAAAGGGCCCAATCTAGTGGATGAACCGCACGGCCAGCTTCTGGGTGCGGGCACAGTGCCACA-TCTTCCATCACTTCCTGATGTGCCCCACCAGCACTGAAG----AGCCTGGAGACAGGGCAAGAGGTAGGCTGAGAAGGATGAGATGGTGAATTCCAGCTTCTTCCTGACCCTGAGCCCACCCCCAG--GATGACCCTCAACCTTTAGGAGTGGGAGAGCAAGATTGACAGCTTCGAGTGATTCACC--AAGAAGATGGACAGCAGGACGCTCAGCTCAACTTCACAGCCAGTGA
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           55331 299 +    168452 CAAGTTCAGAAAGGGCCCAGTCTGGTGGATGAACCACATGGCCAGCTTCTGGGTGAGGGCACAGTGCCACA-TTATTTGTCACTTCCTGATGTGCCCCACCAGCACTGAAGAGACAGCCTGGAGACAGGGCAAGGGGAAGGCTGAGTAGGATGAGATGGTGAGTTCCAGATTCTTCCTGTCCCTGAGCCCACCCCGAG----TGACCGTCAAACTTTAGGAATGGGAGAGCAAGATTGACAGCTTCAAGTGCTTCACC--AAGAAGATGGACAGCAGGGCACTCAGCTCAACTTCACAGCCAGTGA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130420992 304 - 210400635 CAAGTGCAGAAAGGGCTCAATCTGGTGGATGGACCACATGGCCACTTTCTGCATGAGG-CACAGTGCCACA-TCTTCCGTCACTTCATGATATGTCCCACCAGCACTGAAGAGACAGCCTGGAGACAGTACAAGAGGAGGGCTGACAAAGATGAAATGGTGAGTTCCAGCTTCTTTCTGACCCTGAGCTCACCCCCAGGTAGTGGTTCTCATCCTTTAGGAGTAGGAGAGCAAGATTGATGACTTTGAGTGCCTCACTCAAAGAAGGTGGACAATAGGGCACTCAGCTCAACTTCATAGCCAATGA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64680641 301 -  72162052 CAAGTGCAGAAAGGGTCCAGTCTGGTAGCTGAACCACACGGCCAGCTTCTGGGTGTGGCCACAGTGCCATG-CCTT-CGTCACTTCCTGATGTGCCCCAGCAGCACTGCAGAGACGACCTGAAAACAGGGCAAGAGGAAGGCTGAGAAGGTTGAGATGGTGAGTGCCAGCTTCTTTCTGACCCTGAGCCCACCTCCAGCTAGT-GCCCTCAAATGCTCAGAGTGGAAGAGGAAGATGAATGGCTTTGAGTGTTTCACC--AAGAAGATGGACAACAGGGTGCATAGCTCAACCTCACAGCCAGTGA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1098209 301 +   1314817 CAAGTGCAGAAAGGGCCCAATCTGGTAGCTGAACCACACGGCCAGCTTCTGGGTGTGGCCACAGTGCCATG-TTTT-CATCACTTCCCGACGTGTCCCACCAGCACTGCAGAGACAACCTGAAAACAGGGCAAGACGAAGGCTGAGAAGGTTGAGATGGTGAGTGCCAGCTTCTTTCTGACCCTGAGCCCACCTCCAGCTGGT-GCCCTCAAATGCTCAGAGTGGAAGAGGAAGATGAATGGCTTTGAGTGCCTCACC--AAGAAGATGGACAACAGGGCGCACAGTTCAACCTCACAGCCAGTGA
i cebCap1.NW_016107851v1       I 76 I 52
s aotNan1.NW_018488791v1         6456303 301 -   6597006 CAAGCGCAGAAAGGGCCCAATCTGGTAGCTGAACCACACAGCCAGCTTTTGGGTGTGACCACAGTGCCATG-TCTT-CATCACTTCCCGATGTGCCCCAGCAGCACTGCAGAGACAACCTGAAAACAGGGCAAGAGGAAGGTTGAGAAGGTTGAGACGGTGAGTGCCAGCTTATTTCTGACCCTGAGTCCACCTCCAGCTGGT-GCCCTCAAATGCTCAGAGTGGAAGAAGAAGATGAATGGCTTTGAGTGCTTCACC--AAGAAGATGGACAACAGGGCACACAGCTCAACCTCACAGCCAATGA
i aotNan1.NW_018488791v1       I 76 C 0

a score=10500.000000
s hg38.chr14_GL000009v2_random     60417 1 +    201709 G
s panTro5.chr9                  41739986 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093447 1 - 114479721 G
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26259 1 +     53730 G
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857106 1 + 122973662 G
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551450 1 - 111343173 G
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111144896 1 - 111193037 G
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26453826 1 +  28977278 G
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650025 1 +   8072957 G
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3740598 1 - 108555830 G
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166051 1 +   1331228 G
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           55630 1 +    168452 G
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130421296 1 - 210400635 G
i calJac3.chr1                 C 0 I 1
s saiBol1.JH378105              64680942 1 -  72162052 G
i saiBol1.JH378105             C 0 I 1
s aotNan1.NW_018488791v1         6456604 1 -   6597006 G
i aotNan1.NW_018488791v1       C 0 I 25
e cebCap1.NW_016107851v1         1098510 52 +   1314817 I

a score=80310.000000
s hg38.chr14_GL000009v2_random     60418 17 +    201709 T-------------------GGTG-GCAGGCTTTGAG
s panTro5.chr9                  41739987 16 + 116767853 --------------------AGTG-ACAGGGTTTGAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093448 17 - 114479721 T-------------------GGTG-ACAGGCTTTAAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26260 17 +     53730 T-------------------GGTG-ATGGGCTTTAAG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857107 36 + 122973662 TTGACATGCAAGTTGATCACAGTC-ACAGGCTTTAAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551451 36 - 111343173 TTGACATGCAAGCAGGTGATGGTG-ATGGGCTTTAAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111144897 36 - 111193037 TTGACATGCAAGCAGATGATGGTA-ACAGGCTTTAAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26453827 36 +  28977278 TTGACATGCAAGCAGGTGATGGTG-ATGGGCTTTAAG
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650026 36 +   8072957 TTGACATGCAAGCAGGTGATGGTG-ATGGTCTTTAAG
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3740599 30 - 108555830 TTGACATGCAAGCAGAT------G-ACAGGCTTTAAG
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166052 36 +   1331228 TTGACATGCAAGCAGATGACGGGG-ACAGGCTTTAAG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           55631 36 +    168452 TTGACATGCAGGCAGATGATGGTG-ACAGGCTTCAAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130421298 17 - 210400635 -------------------TGGTG-ACAGGCTTTAAG
i calJac3.chr1                 I 1 I 441
s saiBol1.JH378105              64680944 14 -  72162052 -------------------TGGCATGCAAGC----AG
i saiBol1.JH378105             I 1 I 10
e aotNan1.NW_018488791v1         6456605 25 -   6597006 I
e cebCap1.NW_016107851v1         1098510 52 +   1314817 I

a score=156805.000000
s hg38.chr14_GL000009v2_random     60435 23 +    201709 AAAGAGCATCAGAAGCCTGACAG
s panTro5.chr9                  41740003 23 + 116767853 AAAGAGCATCAGAAGCCTGACAG
i panTro5.chr9                 C 0 I 3
s panPan2.chr13                 96093465  7 - 114479721 AAAGAGC----------------
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26277 23 +     53730 AAAGAGCATCAGAAGGCTGCCAG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857143 23 + 122973662 AAAGAGCATCAGAAGGCAGCCAG
i nomLeu3.chr1a                C 0 I 3
s rheMac8.chr15                   551487 23 - 111343173 AAAGAGAATCAGAAGGTGGCCAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111144933 23 - 111193037 AAAGGGCATCAGATGGCAGCCAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26453863 23 +  28977278 AAAGAGCATCAGAAGGTGGCCAG
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650062 23 +   8072957 AAAGAGCATCAGAAGGTGGCCAG
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3740629 23 - 108555830 AAAGAGCATCAGAAGGCAGCCAG
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166088 23 +   1331228 AAAGAGCATCAGAAGGCAGCCAG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           55667 23 +    168452 AAAGAGCATCAGATGGCAGCCAG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130421756 23 - 210400635 AAAGAGCATCAGAAGGTGGCCAG
i calJac3.chr1                 I 441 C 0
s saiBol1.JH378105              64680968 23 -  72162052 AACGAGCATCAGAAGGCAGCCAG
i saiBol1.JH378105             I 10 I 3
s aotNan1.NW_018488791v1         6456630 23 -   6597006 AAGGAGCATCAGAAGGCAGCCAG
i aotNan1.NW_018488791v1       I 25 I 3
e cebCap1.NW_016107851v1         1098510 52 +   1314817 I

a score=1769023.000000
s hg38.chr14_GL000009v2_random     60458 225 +    201709 TTCTTCAGCCTCAGCCAGGCCTTGGAGCTGGACCAGGCCATCCACTTCAGTATAGATGCCTTCCACTCTGTCAGTGAGCTCTTTGCCAGTCAGTCCAGGAAGGACCTGGACCTAGCCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAACATCCTGGACATCATCCACATACACAAGGAAGCTCTTACCAAAGTCATGGAGAGCAGGCAACATGTGGCA
s panTro5.chr9                  41740029 225 + 116767853 TTCTTCAGCCTCAGCCAGGCCTTGGAGCTGGACCAGACCATCCACTTCAGTATAGATGCCTTCCACTCTCTCAGTGAGCTCTTTGCCAATCAGTCCAGAAAGGACCTGGACCCAGCCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAACATCCTGGACTTCATCCACATACACAAGGAAGCTCTTACCAAAGTCATGGAGAACAGGCAACATGTGGCA
i panTro5.chr9                 I 3 C 0
s panPan2.chr13                 96093472 168 - 114479721 ---------------------------------------------------------GTCTTCCACACTGTCAGTGAGCTCTTTGCCAATCAGTCCAGGCAGGATCTGGACCCAGCCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAACATCTTGGACATCATCCACATACACAAGGAAGCTCTTACCAAAGTCACAGAGAGCAGGCAACATGTGGCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26300 223 +     53730 TACTTCAGCCTCAGCCAGGCCTTGGAGCTGGACCAGGCCATTGACTTCAGTATAGATGCCTTCCACACTGTCAGTGAGGTCTTTGCCAATCAGTCCAG-CAGGACCTGGACCCAGCCATGGACCTGTTAATGCTGTCTCAGGGACACC-GACCAACATCCTGGACATCGTCCACATACACAAGGAAGCTCTTACTAAAGTCACGGAGAGCAGACAACAAGTGGCA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857169 224 + 122973662 TTCTTCCACCTCAGCCAGGCCTTGGAGCTGGAACAGGCCATC-ACTTCACCAGAGATGCCTTCAACACCATCAGTGAGCTCTTTGCCAATGAGCCCAGCCAGGAACTGGACCCAGTCATGGCCCTCTTAGTACTATCTCAGGGACACCAGACCAACATCCCGGACATCATCCACATACACAAGGAAGCTCTTACCAAAGTCATGGAGAGTAGGCAACATGTGACA
i nomLeu3.chr1a                I 3 C 0
s rheMac8.chr15                   551510 221 - 111343173 TTCTTCAGCCTCAGCCAGGTCTTGGAGCTGGAGCAGGCCAT-CACTTCACCAGAGATGCCTTCAACACT---GATTGGCTCTTTGCCAATCAGCCCAGGCAGGACCTGGACCCAGTCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAAAATCCTGGACATCATCCATATACACAAGGAAGCTCTTACCAAAGTCATGCAGAGCAGGCAACATGTGGCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111144956 225 - 111193037 TACTTCAGCCTCAGCCAGGCATTGGAGTTGGACCAGGCCATCCACTTCACCATAGAGGCCTTCCACACTATCAGTGAGCTCTTTGCCAGTCAGCCCAGGCAGGACCTGGACCCAGTCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAACATCCTGGACATCATCCACATGCACAAGGACGCTCTTACCAAAGTCACGGAGAGCCGGCAATATGTGACA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26453886 221 +  28977278 TTCTTCAGCCTCGGCCAGGTCTTGGAGCTGGAGCAGGCCAT-CACTTCACCAGAGATGCCTTCAACACT---GATTGGCTCTTTGCCAATCAGCCCAGGCAGGACCTGGACCCAGTCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAAAATCCTGGACATCATCCGTATACACAAGGAAGCCCTTACCAAAGTCATGCAGAGCAGGCAACATGTGGCA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650085 221 +   8072957 TTCTTCAGCCTCGGCCAGGTCTTGGAGCTGGAGCAGGCCAT-CACTTCACCAGAGATGCCTTCAACACT---GATTGGCTCTTTGCCAGTCAGCCCAGGCAGGACCTGGACCCAGTCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAAAATCCTGGACATCATCCGTATACACAAGGAAGCTCTTACCAAAGTCATGCAGAGCAGGCAACATGTGGCA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3740652 224 - 108555830 TTCTTCAGCCTTGGCCAGGTGTTGGAGCTGGAACGGGCCAT-CATTTCACCAGAGATGCCTTCAACACCGTCAGTGAGCTCTTTGCCAATCAACCCAGGCAGGACCTGGACCCAGTCATGGACCTGTTAGGGATGTCTCAGGGACACCAGGCCAACATCCTAGACATCATCCACATACACAAGGAAGCTTTTACCAATGTCACGAAAAGCAGGCAATGTGGGGCA
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166111 224 +   1331228 TTCTTCAGCCTCGGCCAGGTCTTGGAGCTGGAACAGGCCAT-CATTTCACCAGAGATGCCTTCAACACCATCAGTGAGCTCTTTGCCAGTCAACCCAGGCAGGACCTGGACCCAGTCATGGACCTGTTAGGGCTGTCTCAGGGACACCAGGCCAACATCCTAGACATCATCCACATACACAAGGAAGCTTTTACCAATGTCACGAAAAGCAGGCAATGTGGGGCA
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           55690 225 +    168452 TACTTCAGCCTCAGCCAGGCATTGGAGTCAGACCAGGCCATCCACTTCACCATAGAGGCCTTCCACACTGTCAGTGAGCTCTTTGCCAGTCAGCCCAGGCAGGACCTGGACCCAGTCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAACATCCTGGACATCATCCACATGCACAAGGCCGCTCTTACCAAAGTCACGGAGAGCCGGCAATATGTGGCA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130421779 224 - 210400635 TTCTTCAGCCTCAGCCAGGCCGTGGAGCTGGACCAGCCCATCTGCTTCACCAATGATGCCTTTATCACCATCAGTGAGCTCTTTGCCAGTCAGCCCAGGCAGGACTTGGACCCAGTCATGGACCCGTTAGTGCT-TCTCAGGGACACCAAGTCAACATCCTAGACATCATCCACGTACACAAGAAGCCTCTTACCAAAGTCATGGAGAGCAGACAACATGTGGCA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64680994 208 -  72162052 TTCTTCAGCCTCAGCCAGGCCTTGGAGCTAAACCAGATCATCCACTTCCCTGGAAATGCCTGCAACACCTTCAGTGAGCTCTTTGCCGATCAGCCCAGA-----------------CATGGATCTGTTAGTGCTGTCTCAGGGACACCAGACCAACTTCCTTGACATCATCCATGTACACAAAGAGGTTCTTATGAAAGTCAAGGAGAGCTGGCAACATGTGGCA
i saiBol1.JH378105             I 3 C 0
s cebCap1.NW_016107851v1         1098562 208 +   1314817 TTCTTCAGCCTCAGCCAGGCCTTGGAGCTGGACCAGATCATCCACTTTCCTGGAAATGCCTGCAACACCATCAGTGAGCTCTTTGCCGATCAGCCCAGG-----------------CATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAACTTCCTTGACATCGTCCATGTGCACAAAGAAGTTCTTATGAAAGTCAAGGAGAGCCAGCAACATGTGGCA
i cebCap1.NW_016107851v1       I 52 C 0
s aotNan1.NW_018488791v1         6456656 199 -   6597006 TTCTTCAGCCTCAGCCAGGCCTTGGAGCTGGACCAGATCATCCACTTCCCTGGAAATGCCTGCAACACCTTCAGTGACCT---------TCAGCCCAGG-----------------CATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAACTTCCTTGACATCATCCATGTACACAAAGAAATTCTTATGAAAGTCAAGGAGAGCTGGCAACATGTGGCa
i aotNan1.NW_018488791v1       I 3 I 85

a score=456502.000000
s hg38.chr14_GL000009v2_random     60683 65 +    201709 GAAGGGAAGACAG-----AGGTGCAGAGGCTGATGACG-TCAGAATCACAGGAACAGGATTTCTTTGGCCA
s panTro5.chr9                  41740254 65 + 116767853 GAAGGGAAGACAG-----AGGTATAGAGGCTGATGACG-TCAGAATCACAGGAACAGGATTCCTTTGGCAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093640 65 - 114479721 GAAGGGAAGACAG-----AGATGCAGAGGCTGATGATG-TCAGAATCACAGGAATAGGATTTCTTTGGCCG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26523 65 +     53730 GAAGGGAAGATAG-----AGGTGCAGAGGCTGATGATG-TCAGAATCACAGGAACAGGATTTCTTTGGCCA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857393 65 + 122973662 GAAGGGAAGACAG-----AGGTGCAGAGGCTGATAACG-TCAGAATCACAGGAACAGGATTTTTTGGGACA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551731 65 - 111343173 GAAGGGAAGACAG-----AGGTGCAGAGGCTGATGACG-CCAGAATCACAGGAACAGGATTTTTGTGGCCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111145181 65 - 111193037 GAAGTGAAGACAG-----AGGTGCAGAGGCTGATGACG-TCAGAATCGCAGGAACAGGATTTCTTTGGCTA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26454107 65 +  28977278 GAAGGGAAGACAG-----AGGTGCAGAGGCTGATGACA-CCAGAATCACAGGAACAGGATTTTTGTGGCCA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650306 65 +   8072957 GAAGGGAAGACAG-----AGGTGCAGAGGCTGATGATG-CCAGAATCACAGGAACAGGATTTTTGTGGCCA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3740876 65 - 108555830 GAAGGGAAGACAG-----AGGTGCAGAGGCCGATGACA-TCAGAATCACAGGAACAGGATTTCTTGGGACA
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166335 65 +   1331228 GAAGGGAAGACAG-----AGGTGCAGAGGCCGATGACA-TCAGAATCACAGGAACAGGATTTCTTGGGACA
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           55915 65 +    168452 GAAGTGAAGACAG-----AGGTGCAGAGGCTGATGACG-TCAGAATCACAGGAACAGGATTTCTTTGGCCA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130422003 65 - 210400635 GAAGGGAAGACAG-----AGGTGCAGATGCTGATGATG-TCAGGATCACAGGAACAGGATTTCTTTGGCCA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64681202 70 -  72162052 AAAAAAAAAAAAAAAGACAGGTGTGGAGGCTGACGATGTTCAGAATGATAGAAACATGATCGC-ATGATTT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1098770 70 +   1314817 AGAAAAAAAAAAAGACAGAGGTGTCGAGGCTGATGATGTTCAGAATCATAGAAACATGATCGC-ATGATTT
i cebCap1.NW_016107851v1       C 0 C 0
e aotNan1.NW_018488791v1         6456855 85 -   6597006 I

a score=489150.000000
s hg38.chr14_GL000009v2_random     60748 55 +    201709 CTTTGGCTGAAATTCACCACTTCCATCCAATTCCAGTGAGAGACATGGACTCACA
s panTro5.chr9                  41740319 55 + 116767853 CTTTGGCTGAAATTCACCACTTCCATCCAATTCCAGTGAGAGACATGGACTCACA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093705 55 - 114479721 CTTTGGCTGAAATTTACCACTTCCATCCAATTCCAGTGAGAGACATGGACTCACA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26588 55 +     53730 CTTTGGCTGAAATTCACCACTTCCATCCAATTCCAGTGAGAGACATGGACTCACA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857458 49 + 122973662 CTTTGGCTGAAATTCACCACTTCCATCCAATTC------GAGACATGAACTCACA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551796 55 - 111343173 CTTTGGCTGAAATTCACTGCTTCCATCCAATTCAAATGAGAGACATGGACTCACA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111145246 55 - 111193037 CTTTGGCTGAAATTCACCACTTTCATCCAATTCCAGTGAGAGACATGGACTCACA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26454172 55 +  28977278 CTTTGGCTGAAATTCACTGCTTCCATCCAATTCAAATGAGAGACATGGACTCGCA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650371 55 +   8072957 CTTTGGCTGAAATTCACTGCTTCCATCCAATTCAAATGAGAGACATGGACTCGTA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3740941 55 - 108555830 CTGTGGCTGAAATTCACCACTTTCATCCAATTCGAGTGAGAGACATGGACTCACA
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166400 55 +   1331228 CTGTGGCTGAAATTCACCACTTTCATCCAATTTGAGTGAGAAACATGGACTCACA
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           55980 55 +    168452 CTTTGGCTGAAATTCACCACTTTCATCCAATTCGAGTAAGAGACATGGACTCACA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130422068 55 - 210400635 CATTGGCTGAAATTCACTCCTTCCATCCAATTTGAGTGAGACACTTGAAATCACA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64681272 55 -  72162052 CTTTAGCTGAAATTTACCACGTCCATCCAATTCGAGTGAGAGACTTGAAATCTAA
i saiBol1.JH378105             C 0 I 299
s cebCap1.NW_016107851v1         1098840 55 +   1314817 CTTTAGCTGAAATTCACCACGTCCATCCAATTCGAGTGAGAGACTTGAAATCTCA
i cebCap1.NW_016107851v1       C 0 C 0
s aotNan1.NW_018488791v1         6456940 55 -   6597006 CTTTAGCTGAAATTCACTACATCCATCCAATTCGAGTGAGAGACTTGAACTCTAA
i aotNan1.NW_018488791v1       I 85 C 0

a score=138738.000000
s hg38.chr14_GL000009v2_random     60803 15 +    201709 GATGCAGCATTTCTT
s panTro5.chr9                  41740374 15 + 116767853 GATGCAGCATTTCTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093760 15 - 114479721 GATGCAGCATTTCTT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26643 15 +     53730 GATGCAGCATTTCTT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857507 15 + 122973662 GATGCAGGATTTCTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551851 15 - 111343173 GATGCAGTATTTCTT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111145301 15 - 111193037 GATGCTGCATTTCTT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26454227 15 +  28977278 GATGCAGAATTTCTT
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650426 15 +   8072957 GATGCAGTATTTCTT
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3740996 15 - 108555830 GATGCTGCATTTCTT
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166455 15 +   1331228 GATGCAGCATTTCTT
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           56035 15 +    168452 GGTGCTGCATTTCTT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130422123 15 - 210400635 GATGCAGCATTTCTT
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64681626 15 -  72162052 GGTGCAGCAGTTCTT
i saiBol1.JH378105             I 299 C 0
s cebCap1.NW_016107851v1         1098895 15 +   1314817 GGTGCAGCAGttctt
i cebCap1.NW_016107851v1       C 0 I 336
s aotNan1.NW_018488791v1         6456995 15 -   6597006 GGTGCAGCAGttctt
i aotNan1.NW_018488791v1       C 0 I 311

a score=101081.000000
s hg38.chr14_GL000009v2_random     60818 17 +    201709 GCAACAAGAGATACTAC
s panTro5.chr9                  41740389 17 + 116767853 GCAACAAGAGATACTAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093775 17 - 114479721 GCAACAAGAGATGCTAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26658 17 +     53730 GCAACAAGAGATACTAC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857522 17 + 122973662 GCAACAAGAGATACTGT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551866 17 - 111343173 GCAACAAGAGATACTAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111145316 17 - 111193037 GCAGCAAAAGATACTGT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26454242 17 +  28977278 GCAACAAGAGATACTAG
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650441 17 +   8072957 GCAACAAGAGATACTAG
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3741011 17 - 108555830 GCAGCGAAAGATACTGT
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166470 17 +   1331228 GCAACAAGAGATACTAT
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           56050 17 +    168452 GCAACAAGAGATACTGT
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130422138 17 - 210400635 GCAGCAAGAGGTACTAT
i calJac3.chr1                 C 0 I 4
s saiBol1.JH378105              64681641 10 -  72162052 ACAAC-------ACTAT
i saiBol1.JH378105             C 0 I 4
e aotNan1.NW_018488791v1         6457010 311 -   6597006 I
e cebCap1.NW_016107851v1         1098910 336 +   1314817 I

a score=123260.000000
s hg38.chr14_GL000009v2_random     60835 15 +    201709 TTTTTC-AAAAAGTCA
s panTro5.chr9                  41740406 15 + 116767853 TTTTTC-AAAAAGTCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093792 15 - 114479721 TTTTTC-AAAAAGTCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26675 15 +     53730 TTTTTC-AAAAAGTCA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857539 15 + 122973662 TTTTTC-AAAAAGTCA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551883 15 - 111343173 TTTTTC-AAAAAGTCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111145333 15 - 111193037 TTTTTC-AAAATGCCA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26454259 15 +  28977278 TTTTTC-AAAAAGTCA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650458 15 +   8072957 TTTTTC-AAAAAGTCA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3741028 15 - 108555830 TTTTTC-AAAAAGTCA
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166487 15 +   1331228 TTTTTC-AAAAAGTCA
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           56067 15 +    168452 TTTTTC-AAAAAGTCA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130422159 15 - 210400635 TTTTTC-AAAAAGTCA
i calJac3.chr1                 I 4 C 0
s saiBol1.JH378105              64681655 16 -  72162052 TTTTCCGAAAAAGTGG
i saiBol1.JH378105             I 4 C 0
s aotNan1.NW_018488791v1         6457321 15 -   6597006 TTTTCC-AAAAAGTGG
i aotNan1.NW_018488791v1       I 311 C 0
e cebCap1.NW_016107851v1         1098910 336 +   1314817 I

a score=322609.000000
s hg38.chr14_GL000009v2_random     60850 32 +    201709 CCCAGGAATTGATAGTGTTGAATGACTCGATA
s panTro5.chr9                  41740421 32 + 116767853 CCCAGGAATTGATAGTGTTGAATGACTCGATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093807 32 - 114479721 CCCAGGAATTGATAGTGTTGAATGACTCGATA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26690 32 +     53730 CCCAGGAATTGATAGTGTTGAATGACTCGATA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857554 32 + 122973662 CCCAGGATTTGATAGTGTTGAATGACTAGATA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551898 32 - 111343173 CCCAGGAATTGATAGTGTTGAATGACTAGATA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111145348 32 - 111193037 CCCAGGAATTGATAGTGTTGAATGACTAGATA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26454274 32 +  28977278 CCCAGGAATTGATAGTGTTGAATGACTAGATA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650473 32 +   8072957 CCCAGGAATTGATAGTGTTGAATGACTAGATA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3741043 32 - 108555830 CCCAGGAATTGATAGTGTTGAATGACTAGATA
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166502 32 +   1331228 CCCAGGAATTGATAGTGTTAAATGACTAGATA
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           56082 32 +    168452 CCCAGGAATTGATAGTGTTGAATGACTAAATA
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130422174 32 - 210400635 CTCAGGAATTGATAGTGTTGAATGACAAGATA
i calJac3.chr1                 C 0 C 0
s saiBol1.JH378105              64681671 32 -  72162052 CCCAGGAGTTGATAGTGTTGAATAACTTGATA
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1099246 32 +   1314817 CCCAGGAGTTGATAGCGTTGAATAACTTGATA
i cebCap1.NW_016107851v1       I 336 C 0
s aotNan1.NW_018488791v1         6457336 32 -   6597006 CCCAGGAGTTGATAATGTTGAATAACTCGATA
i aotNan1.NW_018488791v1       C 0 N 0

a score=54827.000000
s hg38.chr14_GL000009v2_random     60882 10 +    201709 CTCGATCGTG
s panTro5.chr9                  41740453 10 + 116767853 CTCGATCGTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093839 10 - 114479721 CTCAATCGTG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26722 10 +     53730 CTCCATCGTG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857586 10 + 122973662 CTCCACTGTG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   551930 10 - 111343173 CTCCTTTGTG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111145380 10 - 111193037 CTCGATCGTG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26454306 10 +  28977278 CTCCTTTGTG
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650505 10 +   8072957 CTCCTTTGTG
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3741075 10 - 108555830 CTCCATTGTG
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166534 10 +   1331228 CTCCTTTGTG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           56114 10 +    168452 CTCGATCGTG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130422206 10 - 210400635 TTTGATTGTG
i calJac3.chr1                 C 0 I 7
s saiBol1.JH378105              64681703 10 -  72162052 TTCAAGTATG
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1099278 10 +   1314817 TTCAAGTGTG
i cebCap1.NW_016107851v1       C 0 C 0

a score=427573.000000
s hg38.chr14_GL000009v2_random     60892 61 +    201709 GACGGTTTCCAGTTCAAGGATACTTTCTACAGCAGAATAATAACACT--AGCAAAGAGCTAGT
s panTro5.chr9                  41740463 61 + 116767853 GATGGTTTCCAGTTCAAGGATACTTTCTACAGCAGAATAATAACACT--AGCAAACAGCTAGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093849 61 - 114479721 GACTGTTTCCAGTTCAAGGATACTTTCTACAGCAGAATAATAACACT--AGCAAAGAGCTAGT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26732 61 +     53730 GACTGTTTCCAGTTCAAGGATACTTTCTACAGCAGAATAATAACACT--AGCAAAGAGCTAGT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857596 61 + 122973662 GACTGTTTCCAGTTCAGGGATACTTTCTATAGCAGAATAATAACACT--GGCAAAGAGCTAGT
i nomLeu3.chr1a                C 0 I 19
s rheMac8.chr15                   551940 61 - 111343173 GACTGTTTCCAGTTCAAGGATAGTTTCTACAGCAGAATAATAACACT--AGCAAAGAGCTAGT
i rheMac8.chr15                C 0 I 19
s macFas5.chr13                111145390 62 - 111193037 GACTGCTTCCAGTTCAAGGATTCATTCTACAG-AGAATAATAACACTAGAGCAAAGAGCTAGT
i macFas5.chr13                C 0 I 19
s macNem1.NW_012012133v1        26454316 61 +  28977278 GACTGTTTCCAGTTCAAGGATAGTTTCTACAGCAGAATAATAACACT--AGCAAAGAGCTAGT
i macNem1.NW_012012133v1       C 0 I 19
s cerAty1.NW_012000030v1         5650515 61 +   8072957 GACTGTTTCCAGTTCAAGGATAGTTTCTACAGCAGAATAATAACACT--AGCAAAGAGCTAGT
i cerAty1.NW_012000030v1       C 0 I 19
s chlSab2.chr12                  3741085 61 - 108555830 GACTGTTTCCAGTTCAAGGATACTTTCTACAGCAGAATAATAACACT--AAAAAAGAGCTAAT
i chlSab2.chr12                C 0 I 19
s manLeu1.NW_012106397v1          166544 61 +   1331228 GACTGTTTCCAGTTCAAGGATACTTTCTACAGCAGAATAATAACACT--AAAAAAGAGCTAAT
i manLeu1.NW_012106397v1       C 0 I 19
s colAng1.NW_012121088v1           56124 62 +    168452 GACTGTTTCCAGTTCAAGGATTCATTCTACAG-AGAATAATAACATTAGAGCAAAGAGCTAGT
i colAng1.NW_012121088v1       C 0 I 19
s saiBol1.JH378105              64681713 61 -  72162052 GACTTTTTCCAGTTCAAGGATACTTTCTACAGCAAAGTGAAAACACT--ATCAAAGAGCTAGT
i saiBol1.JH378105             C 0 C 0
s cebCap1.NW_016107851v1         1099288 61 +   1314817 GACTTTTTCCAGCTCAAGGATACTTTCTACAGCAAAATGAAAACACT--ATCAAAGAGTTAGT
i cebCap1.NW_016107851v1       C 0 I 28
e calJac3.chr1                 130422216  7 - 210400635 I

a score=34359.000000
s hg38.chr14_GL000009v2_random     60953  8 +    201709 -------------------ACAAGGAT-
s panTro5.chr9                  41740524  8 + 116767853 -------------------ACAAGGAT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093910  8 - 114479721 -------------------ACAAGGAT-
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26793  8 +     53730 -------------------ACGAGCAT-
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857676  8 + 122973662 -------------------ACAAGGAT-
i nomLeu3.chr1a                I 19 C 0
s rheMac8.chr15                   552020  8 - 111343173 -------------------ACAAGGAT-
i rheMac8.chr15                I 19 C 0
s macFas5.chr13                111145471  8 - 111193037 -------------------ACAAGGAT-
i macFas5.chr13                I 19 C 0
s macNem1.NW_012012133v1        26454396  8 +  28977278 -------------------ACAAGGAT-
i macNem1.NW_012012133v1       I 19 C 0
s cerAty1.NW_012000030v1         5650595  8 +   8072957 -------------------ACAAGGAT-
i cerAty1.NW_012000030v1       I 19 C 0
s chlSab2.chr12                  3741165  8 - 108555830 -------------------ACAAGGAT-
i chlSab2.chr12                I 19 C 0
s manLeu1.NW_012106397v1          166624  8 +   1331228 -------------------ACAAGGAT-
i manLeu1.NW_012106397v1       I 19 C 0
s colAng1.NW_012121088v1           56205  8 +    168452 -------------------ACAAGGAC-
i colAng1.NW_012121088v1       I 19 C 0
s saiBol1.JH378105              64681774 28 -  72162052 GCCCATTATTGGTGATAGTACAGAAAAT
i saiBol1.JH378105             C 0 C 0
e calJac3.chr1                 130422216  7 - 210400635 I
e cebCap1.NW_016107851v1         1099349 28 +   1314817 I

a score=1837780.000000
s hg38.chr14_GL000009v2_random     60961 273 +    201709 GGTTTTGTGCTCAACTGAAATCCAGTTGAATACAGAATTGTATAGGAAACAGTTAATATGGTGATAGAATAGAAACAGTAGCAATCGTGAACTAAATCATACTATGAATGCCTAAACTACTGCTGTAACTTTTGGAAAAATGATAATAC-CACTTTATTGCTTTTCGAAGTATGAATATTTTAGTGTATATGCTCTAGACTTAAAACTCTATAAAGAGTCTCAAAGAAGTTGGCTGGATAAAGCCTGCTGTGGATGTCTTTATATTCAAAGATT
s panTro5.chr9                  41740532 273 + 116767853 AGTTTTGTGCTCAACTGAAATCCAGCTGAATACAGAATTGTATAGGAAACAGTTAATATGGTGATAGAATAGAAACAGTAGCAAACGTGAACTAAATCATACTATGAATGCCTAAACTACTGCTGTAACTTTTGGAAAAATGATAATAC-CACTTTATTGCTTTTTGAAGTATGAATATTTTAGTGTATATGCTCTAGACCTCAAACCCTATAAAGAGTCTCAAAGAAGTTGGCTGGATAAAGCCTGCTGTGGATGTCTTTATATTCAAAGATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96093918 273 - 114479721 GGTTTTGTGCTCAACTGAAATCCAGCTGAATACAAAATTGTATAGGAAACAGTTAATATGGTGATAGAATAGAAACAGTAGCAAATGTGAACTAAATCATGCTATGAATGCCTAAACTACTGCTGTAACTTTTGGAAAAATGATAATAC-CACTTTATTGCTTTTTGAAGTATGAATATTTTAGTGTATATGCTCTAGACCTCAAACCCTATAAAGAGTCTCAAAGAAGTTGGCTGGATAAAGCCTGCTGTGGATGTCTTTATATTCAAATATT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           26801 272 +     53730 GGTTTTGTGCTCAACTGAAATCCAGCTGAATACAGAATTGTATAGGAAACAGTTAATATGGTGATAGAATAGAAAC-GTAGAAAATGTGAACTAAATCATGCTATGAATGCCTAAACTACCGCTGTAACTTTTGGAAAAATGATAATAC-CATTTTATTGCTTTTTGAAGTATGAATATTTTAGTGTATATGCTCTAGACCTCAAACCCTATAAAGAGTCTCAAAGAAGTTGGCTGGATAAAGCCTGCTGTGGACGGCTTTATATTCAAAGATT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857684 274 + 122973662 GGTTTTGTTCTCAATTGAAACTCAGCTGAATGTAGAATTGTGTAGGAAACAGTTAGTATGGTGATAGAATAGAAAGAGTAGCAAACATGAAGTAAACCATGCTATGAATTCCTACACTACCATTGTAACTTTTGAAAGAATGATACCACTTATTTTATTGCTTTTTGAAGGATGAATATTTTAGTATATATGCTGTAGACCTCAAACCCTGTGAAGAGTCTCAAAGAAGCTGGCTGGATAAAGCCTGCTGTGGATGTCTTTATATTCCAAGATT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   552028 273 - 111343173 GGTTTTGTTCTCAACTGAAACTCAGCTGAATACAGAATTGTGTAGGAAAGAGTTAATATGGTGATAGAATAGAAAGAGCAGCAAACATGAACTAAATCAGGCTATGAATGCCTACACTACCATTGTAATTTTTGGAAGAATGATACCACTTATTTTATTGC-TTTTGAAGTGTGAATATTTTAGTTTATATGCTGTAGACCTCAAACCCTGTGAAGAGTCTCAAAGAAGCTGGCTGGATAAAGCCTGCTGTGGATGTCTTTATATTCAAAGATT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111145479 270 - 111193037 GGTTTTGTGATCAACTGAAATCCAGGTGAATACAGAATTGTGTAGGAAACAGTTAATATGATGATACAATAGAAACAGTAGCAAACATGAATTAAATCATGCTATGAATGCCTAAACTACCATTGTAACTTTTGGAAGAATAATACCAC----TTTACTGCTTTTTGAAGTATGAATATTTTAGTGTATGTGCTATAGGCCTCAAATCCTATAAAGAATCTCCGAGAAGTTGGCTGGATAAATCCTGCTGTGGATGTCTTTATACTCAAAGATT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26454404 273 +  28977278 GGTTTTGTTCTCAACTGAAACTCAGCTGAATACAGAATTGTGTAGGAAAGAGTTAATATGGTGATAGAATAGAAAGAGCAGCAAACATGAACTAAATCAGGCTATGAATGCCTACACTACCATTGTAATTTTTGGAAGAATGATACCACTTATTTTATTGC-TTTTGAAGTGTGAATATTTTAGTTTATATGCTGTAGACCTCAAACCCTGTGAAGAGTCTCAAAGAAGCTGGCTGGATAAAGCCTGCTGTGGATGTCTTTATATTCAAAGATT
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650603 273 +   8072957 GGTTTTGTTCTCAACTGAAACTCAGCTGAATACAGAATTGTGTAGGAAAGAGTTAATATGGTGATAGAATAGAAAGAGCAGCAAACATGAACTAAATCAGGCTATGAATGCCTACACTACCATTGTAATTTTTGGAAGAATGATACCACTTATTTTATTGC-TTTTGAAGTGTGACTATTTTAGTTTATATGCTGTAGACCTCAAACCCTGTGAAGAGTCTCAAAGAAGCTGGCTGGATAAAGCCTGCTGTGGATGTCTTTATATTCAAAGATT
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3741173 274 - 108555830 GCTTTTGTTCTCAGTTGAAACTCAGTTGAATATAGAATTGTGTAGGAAACAGTTAATATGGTGACAGAATAGAAAGAGTAGCAAAGATGAACTAAATCATGCTATGAATGCCTAAACTACCACTGTAACTTTTGGAAGAATGATACCACTTACTTTATTGCTTTTTAAAGTGTGAATATTTTAGTATATATGCTGTAGACTTCAAACCGTGTGAAGAGTCTCAAAGAAGCTGGCTGTATAAAGCCTGATGTGGATGTCTTTATACTCAAAGATT
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166632 274 +   1331228 GCTTTTGTTCTCAGTTGAAACTCAGCTGAATATAGAATTGTGTAGGAAACAGTTAATATGGTGATAGAATAGAAAGAGTAGCAAAGATGAACTAAATCATGCTATGATTGCCTACACTACCAGTGTAACTTTTGGAAGAAAGATACCACTTACTTTATTGCTTTTTAAAGTATGAATATTTTAGTATATATGCTGTAGACTTCAAACCGTGTGAAGAGTCTCAAAGAAGCTGGCTGTATAAAGCCTGATGTGGATGTCTTTATACTCAAAGACT
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           56213 273 +    168452 GGTTTTGTGATCAACTGAAATCTAACTGAATACAGAATTGTGTAGGAAACAGTTAATATGATGACAGAATAGAAACAGTAGCAAACGTGAATTAAATCATGCTATGAATGCCTAAACTACCATTGTAACTTTTAGAAGAATGATAATAC-CACTTTACGGCTTTTCGAAGTATGAATATTTTAGTGTATGTGCTATAGGCCTCAAATCCTATAAAGAATCTCCAAGAAGTTGGCTGGATAAAGCCTGCTGTGGATATCTTTATACTCAAAGATT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64681802 272 -  72162052 GGTTTTCTGCTCAACTGAAACCCAGCTAAATATAGAATTATGTAGGAAACAGTGAATATGGCGATACAATAGAAACAGCACCAAACAGCAACCAAATTATACTCTGTATGCCTACATCACTGCTGTAACTTTTGGAAGAATGATAATAC-TA-TTTATTGCTTTTTAAAGTATGAGTATTTTAGTGCATCCTCTGTAGACCTCAAACCCCACGAAGAGTCTCAGAGAAGCTGGCTGGATAAAGCCTGCTGTGGATGTCTTTATACTCAAAGATT
i saiBol1.JH378105             C 0 I 15923
s cebCap1.NW_016107851v1         1099377 272 +   1314817 GGTTTTCTGCTCGACTGAAACCCAGCTAAATACAGAATTATGTAGGAAACAGTGAATATAGTGATACAATAGAAACAGCACCAAACAGCAACCAAGTTATACTCTGTATGCCTACATCACCACTGTAACTTTTGGAAGAATGATAATAC-TA-TTCATTGCTTTTTAAAGTATGAGTATTTTAGTGCATATTCTGTAGACCTCAAACCCCATGAAGAGTCTCAGAGAAGCTGGCTGGATAAAGCCTTCTGTGGATGTCTTTATACTAAAAGATt
i cebCap1.NW_016107851v1       I 28 N 0
e calJac3.chr1                 130422216   7 - 210400635 I

a score=1170295.000000
s hg38.chr14_GL000009v2_random     61234 239 +    201709 GAtgatgcaatttgaatatgtgtccccaccgaatctcatgttgaattatatttcctaatgtggaaggtggatcctggtataatgtgattgaattatgaaggcaaatttctcatgaatggttcagcaccatccccttg-taccatcctcacaataatgagtaacttctcatgagatgtagtcactgaaatctctatatcacctccccactctccgtgttttccccttgccatgtgagacaa
s panTro5.chr9                  41740805 239 + 116767853 GACgatgcaatttgaatgtgtgtccccaccgaatatcatgttgaattatatttcctaatgtggaaggtggatcctgggataaggtgattgaattatgaaggcaaatttctcatgaatggttcagcaccatccccttg-taccatcctcacaataatgagtgacttctcatgagatgtggtcactgaaaactctatatcacctccctactctccgtgttttccccttgccatgtgagacaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96094191 239 - 114479721 GAtgatgcaatttgaatatgtgtctctaccgaatctcatgttgaattatatttcctaatgtggaaggtggatcctggtataagatgattgaattatgaaggcaaatttctcatgaatggttcagcaccatccccttg-taccattctcacaataatgagtgacttctcatgagatgtggtcactgaaaactctatatcacctccctactctccgtgttttccccttgccatgtgagacaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           27073 235 +     53730 GAtgatgcaattcgaatatgtgtccacaccgaatc-catgttgagttatatttcctaatgtggaagttggatcctgctataaggtgattgaattatgaaggcaaatttctcatgaatggttcagcaccatccccttg-taccatcctcacaa-aatg-gtgacttctcatgagatctggtcactgaaaactctatgtcacatccttactctctatgtttt-cccttgccatgtgagagaa
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40857958 240 + 122973662 GGtgatgcaattcgagtatgtgtccccacgaaatctcatgttgaattatatttcctaatgttgaaggtggatcctggtataaggtgattgaatccggaaggcaaatttctcatgaatggtttagcaccatcctcttgctactgtccttacaatcatgagtgacttctcatgagatctggtcattgaaaactctatgtcacctccctactctgcgtgttttcctcttgccatgtgagacaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   552301 240 - 111343173 GATGATGCAATTCAAGTAtgtgtccccaccaaatctcttgttgaattatatttcctaatgtggaaggtggatcctggtctaaggtgattgaatcctgaaggcaaagttctcatgaatggtttagcagcatcccgttgctactgtcctcacaattatgagtgacttctcatgagacctgttcattgaaaactctgtgtcatgttcctactctgtgtgttttcctcttgccgtgtgagacaa
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111145749 236 - 111193037 AAtgatgtaatttgcat---tgtccccaccaaatctcctgttgaattatacttcctattgtggaaggtggatcctggtataaggtgattgaattgtgaaggcaaatttctcatgaatggttcagcaccatccccttg-tagcatcctcacaatcatgagcaacttctcatgagatctagtcactgaaaactctacatcacctccctactctccgtgttttcctcttgccatgtgagacaa
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26454677 240 +  28977278 GAtgatgcaattcaagtatgtgtccccaccaaatctcttgttgaattatatttcctaatgtggaaggtggatcctggtctaaggtgattgaatcctgaagacaaagttctcatgaatggtttagcagcatcccgttgctactgtcctcacaattatgagtgacttctcatgagacctgttcgttgaaaactctgtgtcatgttcctactctgtgtgttttcctcttgctgtgtgagacaa
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5650876 240 +   8072957 GAtgatgcaattcaagtatgtgtccccaccaaatctcttgttgaattatatttcctaatgtggaaggtggatcctggtctaaggtgattgaatcctgaaggcaaagttctcatgaatggtttagcagcatcccattgctaccgtcctcacaattatgagtgacttctcatgagacctgttcattgaaaactctgtgtcatgttcctactctgtgtgttttcctcttgccgtgtaagacaa
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3741447 240 - 108555830 GAtgatgtaatttgcatgtttgttcccaccaaatctcctgttgaattatatttcctattgtggaaggtggatcctggtataaggtgattgaattatgaaggcaaatttctcatgaatggtttagcaccatcctcttgctactgtcctcacgatcatgagtgacttctcatgagacctggtcattgaaaactctatggcacctccctattctgcatgttttcctcttgccatgtgagacaa
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          166906 240 +   1331228 GAtgatgcaattcgaatatatgtccccaccaaatctcatgttgaattatatttcctaatgttgaaggtagatcctggtctaaggtgattgaatcctgaaggcaaatttctcatgaatggtttagcaccatcctcttgctactgtcctcacaatcatgagtgacttctcatgagacctggtcattgaaaactctatgtcacctccctactctgcatgttttcctcttgccatgtgagacaa
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           56486 224 +    168452 GAtgatgtaatttgaatgtttgtccccaccaagtctcctgttgaattatatttcctattgtggaaggtggatcctggtataaggtgattgaagtatgaa-acaaatttctcgtgaatggttcagca---------------catcctcacaatcatgagtgacttctcatgagatctagtcactgaaaactctacgtcacctccctactctccgtgttttcctcttgccatgtgagacaa
i colAng1.NW_012121088v1       C 0 I 218
e calJac3.chr1                 130422216   7 - 210400635 I
e saiBol1.JH378105              64682074 15923 -  72162052 I

a score=238997.000000
s hg38.chr14_GL000009v2_random     61473 69 +    201709 ttgattctt--------tctttgccttccatgattattgaaagatttctgag---gcctagaagcagaag-cactgtgctt
s panTro5.chr9                  41741044 72 + 116767853 ctgattctt--------tctttgccttccatgattattgaaagatttctgaggccgcctagaagcagaag-cactgtgctt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96094430 72 - 114479721 ctgattctt--------tctttgccttccatgattattgaaagatttctgaggcctcctagaagcagaag-cactgtgctt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           27308 72 +     53730 ctgattctt--------tctttgccttccatgattattgaaagatttctgaggcctcctagaagcagaag-cactgtgctt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40858198 69 + 122973662 c----tctt--------tcttcaccttgcatgaagattgaaagatttctgaggcctcccagaaacagaagccactatgctt
i nomLeu3.chr1a                C 0 I 14
s rheMac8.chr15                   552541 69 - 111343173 ----ctcac--------tcttttccttgcacgaagattgaaaggtttctgaggtttcccagaagcagaagccactgtgctt
i rheMac8.chr15                C 0 I 14
s macFas5.chr13                111145985 77 - 111193037 ----cttactcactctttctttgccttccacgatgattgatagatgtctgagtcctcccagaagcagaagccactgtgctt
i macFas5.chr13                C 0 I 14
s macNem1.NW_012012133v1        26454917 69 +  28977278 ----ctcac--------tcttttccttgcacgaagattgaaaggtttctgagatttcccagaagcagaagccactgtgctt
i macNem1.NW_012012133v1       C 0 I 14
s cerAty1.NW_012000030v1         5651116 69 +   8072957 ----ctcac--------tcttttccttgcacgaagatggaaaggtttctgaggcctcccagaagcagaagccagtgtgctt
i cerAty1.NW_012000030v1       C 0 I 14
s chlSab2.chr12                  3741687 71 - 108555830 ----ttctc------tttcttcaccttgcacgaagattgaaagatttctgaggcctcccagaagcagaagccagtgtgctt
i chlSab2.chr12                C 0 I 14
s manLeu1.NW_012106397v1          167146 71 +   1331228 ----ttctc------tttcttcaccttgcacgaagattgaaaggtttctgaggcctcccagaagcagaagccagtgtgctt
i manLeu1.NW_012106397v1       C 0 I 14
e calJac3.chr1                 130422216  7 - 210400635 I
e colAng1.NW_012121088v1           56710 218 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I

a score=519489.000000
s hg38.chr14_GL000009v2_random     61542 96 +    201709 agaaccatgagccaattaaacctcttttTCAAAATAAATCATACGGGAAATGGCAAAtgaggac-tggagcgttgctataaagatacctggaaatgt
s panTro5.chr9                  41741116 96 + 116767853 agaaccatgagccaattaaacctcttttTCAAAATAAATCATACAgaaaatggcaaatgaggac-tggagcattgctataaagatacctggaaatgt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96094502 97 - 114479721 agaaccatgagccaattacacctctctttcaaaataaatcatacagAAAATGGCAAATGGGGACTtggaatattggtataaagatacctggaaatgt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           27380 96 +     53730 agaaccatgagatgattaaacctcttttTCAAAATAAATCATACAGAAAATGGCAAAtgaagac-tggagcattgctataaagatacctggaaatgt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40858281 96 + 122973662 agaaccatgagccaattaaacctcttttTCAAAATGAATCACACAGAAAATGGCAAAtgaggac-tggagcattgctataaagatacctgaaaatgt
i nomLeu3.chr1a                I 14 C 0
s rheMac8.chr15                   552624 96 - 111343173 agaaccatgagctaattaaacctcttttTCAAAATAAATCATACAGAAAATGGCAAAtgaggac-tggagcattgctataaagatacctaaaaatgt
i rheMac8.chr15                I 14 C 0
s macFas5.chr13                111146076 96 - 111193037 agaaccatgagtcaattcaacctcttttTCAAAACAAATCATACAgaaaatggcaaatgaggat-tggaacattgctataaagatactcaaggatgt
i macFas5.chr13                I 14 C 0
s macNem1.NW_012012133v1        26455000 96 +  28977278 agaaccatgagctaattaaacctcttttTCAAAATAAATCATACAGAAAATGGCAAAtgaggac-tggagcattgctataaagatacctaaaaatgt
i macNem1.NW_012012133v1       I 14 C 0
s cerAty1.NW_012000030v1         5651199 96 +   8072957 agaaccatgagctaattaaacctcttttTCAAAATAAATCATACAGAAAATGGCAAAtgaggac-tggagcgttgctataaagatacctaaaaatgt
i cerAty1.NW_012000030v1       I 14 C 0
s chlSab2.chr12                  3741772 96 - 108555830 agaaccatgagtcaattaaacctcttttTCAAAATGAATCATACAGAAAATGGCAAAtaaggac-tggagcattgctataaagatacctgaaaatgt
i chlSab2.chr12                I 14 C 0
s manLeu1.NW_012106397v1          167231 96 +   1331228 agagccataagccaattaaacctgttttTCAAAATGAATCATACAGAAAATGGCAAAtaaggac-tggagcattgctataaagatacctgaaaatgt
i manLeu1.NW_012106397v1       I 14 C 0
s colAng1.NW_012121088v1           56928 96 +    168452 agaaccgtgagtcaattaaacctcttttTCAAAATAAATCATGCAgaaaatggccaatgaggat-tggagcactgctataaagatacccgagaatat
i colAng1.NW_012121088v1       I 218 C 0
e calJac3.chr1                 130422216  7 - 210400635 I
e saiBol1.JH378105              64682074 15923 -  72162052 I

a score=3392865.000000
s hg38.chr14_GL000009v2_random     61638 557 +    201709  
s panTro5.chr9                  41741212 594 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96094599 594 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           27476 588 +     53730  
i gorGor5.CYUI01002030v1       C 0 I 12
s nomLeu3.chr1a                 40858377 587 + 122973662  
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   552720 601 - 111343173  
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111146172 590 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26455096 602 +  28977278  
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5651295 602 +   8072957  
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3741868 600 - 108555830  
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          167327 588 +   1331228  
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           57024 574 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130422223 586 - 210400635  
i calJac3.chr1                 I 7 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I

a score=28248.000000
s hg38.chr14_GL000009v2_random     62195 5 +    201709 gctat
s panTro5.chr9                  41741806 5 + 116767853 gctat
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96095193 5 - 114479721 gctat
i panPan2.chr13                C 0 C 0
s nomLeu3.chr1a                 40858964 5 + 122973662 gctgt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   553321 5 - 111343173 gctgt
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111146762 5 - 111193037 gctgt
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26455698 5 +  28977278 gctgt
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5651897 5 +   8072957 gctgt
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3742468 5 - 108555830 gctgt
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          167915 5 +   1331228 gctgt
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           57598 5 +    168452 gctgt
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130422809 5 - 210400635 gctgt
i calJac3.chr1                 C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e gorGor5.CYUI01002030v1           28064 12 +     53730 I

a score=214866.000000
s hg38.chr14_GL000009v2_random     62200 46 +    201709 actcctgataatgagtgagttcccatgagatctggttgtttaacag
s panTro5.chr9                  41741811 46 + 116767853 ccttctgatagtgagtgagttcccatgagatctggttgtttaacag
i panTro5.chr9                 C 0 I 30
s panPan2.chr13                 96095198 46 - 114479721 cctcctgatagtgagtgagttcccatgagatctggttgtttaacag
i panPan2.chr13                C 0 I 30
s gorGor5.CYUI01002030v1           28076 46 +     53730 cctcctgatagtgagtgagttctcatgagatctgattccttaacag
i gorGor5.CYUI01002030v1       I 12 C 0
s nomLeu3.chr1a                 40858969 42 + 122973662 cctcctgat----agtgagttctcatgagatctggttgtttaacag
i nomLeu3.chr1a                C 0 I 1
s rheMac8.chr15                   553326 46 - 111343173 cctcttgacagtgagtgagttctcatgtgatctggctgtttaacag
i rheMac8.chr15                C 0 I 43
s macFas5.chr13                111146767 43 - 111193037 cc---tgagagtgagtgagtgctcatgtgatctggttgtttaacag
i macFas5.chr13                C 0 I 23
s macNem1.NW_012012133v1        26455703 46 +  28977278 cctcttgacagtgagtgagttctcatgtgatctggctgtttaacag
i macNem1.NW_012012133v1       C 0 I 43
s cerAty1.NW_012000030v1         5651902 46 +   8072957 cctcttgacagtgagtgaattctcatgtgatctggctgtttaacag
i cerAty1.NW_012000030v1       C 0 I 20
s chlSab2.chr12                  3742473 39 - 108555830 cc---tgatagtgag----ttctcatgttatccggttgtttaacag
i chlSab2.chr12                C 0 I 19
s manLeu1.NW_012106397v1          167920 39 +   1331228 cc---tgatagtgag----ttctcatgtgatctggttgtttaacag
i manLeu1.NW_012106397v1       C 0 I 23
s colAng1.NW_012121088v1           57603 43 +    168452 cc---tgagagtgagtgagtgctcatgtgatctggttgtttaacag
i colAng1.NW_012121088v1       C 0 I 25
s calJac3.chr1                 130422814 43 - 210400635 ---catgacagtgagggagttctcatgagatctccttgtttataag
i calJac3.chr1                 C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I

a score=-15306.000000
s hg38.chr14_GL000009v2_random     62246  7 +    201709 -at--------------ctca--------t
s gorGor5.CYUI01002030v1           28122 29 +     53730 -ctgtggaacctctttcctcactctgtctt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40859012 29 + 122973662 -ctgtggaacctctttcctcactctgtctt
i nomLeu3.chr1a                I 1 C 0
s macFas5.chr13                111146833  7 - 111193037 -----------------------ttgtgtt
i macFas5.chr13                I 23 C 0
s cerAty1.NW_012000030v1         5651968  6 +   8072957 ------------------------tgtctt
i cerAty1.NW_012000030v1       I 20 C 0
s chlSab2.chr12                  3742531  7 - 108555830 -----------------------ctgtctt
i chlSab2.chr12                I 19 C 0
s manLeu1.NW_012106397v1          167982  7 +   1331228 -----------------------ctgtgtt
i manLeu1.NW_012106397v1       I 23 C 0
s colAng1.NW_012121088v1           57671  7 +    168452 -----------------------ctgtgtt
i colAng1.NW_012121088v1       I 25 C 0
s calJac3.chr1                 130422857 22 - 210400635 gctgtggaaactctttcctcat--------
i calJac3.chr1                 C 0 C 0
e rheMac8.chr15                   553372 43 - 111343173 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e macNem1.NW_012012133v1        26455749 43 +  28977278 I
e panPan2.chr13                 96095244 30 - 114479721 I
e panTro5.chr9                  41741857 30 + 116767853 I

a score=61233.000000
s hg38.chr14_GL000009v2_random     62253 16 +    201709 -------cctcctgcttctgctt
s panTro5.chr9                  41741887 16 + 116767853 -------cctcctgctcctgctt
i panTro5.chr9                 I 30 C 0
s panPan2.chr13                 96095274 16 - 114479721 -------cctcctgctcctgctt
i panPan2.chr13                I 30 C 0
s gorGor5.CYUI01002030v1           28151 16 +     53730 -------cctcctgctcctgctt
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40859041 16 + 122973662 -------cctcctactcctgcca
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr13                111146840 16 - 111193037 -------cctcctactcctgcct
i macFas5.chr13                C 0 C 0
s cerAty1.NW_012000030v1         5651974 16 +   8072957 -------gctcctactcctgcca
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3742538 16 - 108555830 -------gctcctattcctgcca
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          167989 16 +   1331228 -------cctcctactcctgcct
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           57678 16 +    168452 -------cctcctactcctgcct
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130422879 23 - 210400635 ctgtcttgctcctactcctgctg
i calJac3.chr1                 C 0 C 0
e rheMac8.chr15                   553372 43 - 111343173 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e macNem1.NW_012012133v1        26455749 43 +  28977278 I

a score=2381878.000000
s hg38.chr14_GL000009v2_random     62269 417 +    201709 taggagacatctcattgtcccttggctttctgatataatgaggaggcttcctgattcctcacagaaacagaagacactatacttccttcacagcttgcagaaccatgagtcaattacacct--cttttatttacaaTAATACAGAAAAGTAgaactgcagagaggagctgtgaaatgccttcaaggcctttttccctttgttttggct-attagcacagggcttctttatatgcaaatttctgaaatcttcttgaatgtt-tccccttaaatgggatttt-tgttcttgctacatagccaa-cctgctatacagatat--ctgaaaaagtagaagcaggctca-gtagtgggtagcaaacaaggattggaagggtttggagggattagattatgacagggag--------aggga-gggaGTGATTTAATCATGG
s panTro5.chr9                  41741903 417 + 116767853 taggagacatctcattgtcccttggctttctgatgtaatgaggaggcttcctgattcctcccagaaacagaagacactatacttccttcacagcttgcagaaccatgagtcaattacacct--cttttatttacaaTAATACAGAAAATTAgaactgcagagaggagctgtgaaatgtcttcaaggcctttttccctttgttttggct-attagcacagggcttctttatatgcaaatttctgaagttttcttgaatgtt-tccccttaaatgggatttt-tgttattgctacatagacaa-cctgctatacagattt--ctgaaaaagtagaagcaggctca-gtagtgggtagcaaacaaagactggaagggtttggagggattagagtatgacggggcg--------tggga-aggAGTGATGTAATCATAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96095290 417 - 114479721 taggagacatctcattgtcccttggctttctgatgtgatgaggaggcttcctgattcctcccagaaacagaagacactatacttccttcacagcttgcagaaccatgagtcaattacacct--cttttatttacaaTAATACAGAAAATTAgaactgcagagaggagctgtgaaatgtcttcaaggcctttttccctttgttttggct-attagcacagggcttctttatatgcaaatttctgaagtcttcttgaatgtt-tccccttaaatgggatttt-tgttattgctacatagacaa-cctgctatacagattt--ctgaaaaagtagaagcaggctca-gtagtgggtagcaaacaaagactggaagggtttggagggattagagtatgacgggGCG--------TGGGA-GGGAGTGATGTAATCATAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           28167 417 +     53730 taggaggcatctcatttttccttggctttctgatataatgaggaggcttcctgattcctcccagaaacagaagacactatgcttccttcacagcttgcagaaccatgagtcaattacacctaacttttatttacaaTAATACAGAAAATTAgaactgcagagaggagctgtgaaatgtcttcaaggccttttttcctttgtcttggct-attagcacagggcttctttacatgcaaatttctgaaatcttcttgaat-tt-ttcccttaaatgggatttt-tgttattgctacatagccaa-cctgctatatagatat--ctg-aaaagtagaagcaggctca-gtagtgggtagcaaacaaagattggaagggtttgaagggataagagtatgagagggag--------tggga-gggagtGATTTAATCATGG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40859057 422 + 122973662 taggagacagctcattgt-ccttggccttctggtttaattaggaggctccctgactcctcccagaaacaaaagacactatgcttccttcacagcctgcagaatcccaagtcaatgaaacct--cttttatttacaaTAATACAGAAAATTAGAACTGCAGAgaggagctgtgaaatgtcttcaaggcctttttccatttgtcttggct-atcagcacagggcttctttgtatgcaaatttctgaaa---tcttgaattttccccccttaaattgggttttgtgttattactacatagccaa-cctgctatagagatac--ctgaaaaagtagaagcaggttcc-a-agtgggtagcaaacaaagattgggagggtttggagggatcagagaatgaaagaaggatgacggCCTGGT-GGGAGTGATTTAATCATGG
i nomLeu3.chr1a                C 0 I 6623
s rheMac8.chr15                   553415 422 - 111343173 tgggagacagctcattgtcccttggccttctggtataattaggaggcttcctgactcctcccagaaacaaaagacactatgcttccttcacagcctgcagaatcccaagtcaattaaacct--cttttatttatGATAATACAGAAAATTAgaactgcagagaggagctgtgaaatatcttcaaggcctttttccatttgtcttggct-attagcacaggacttctttatatgcaaatttctgaag---tcttgaatgtt-cccccttaaatcgggttttgtgttactgctacatagccaa-cctgctatagagatac--ctgaaaaagtagaagcaggttga-a-agtgggtagcaaacagagattgggatggtttggagggattagagaatgacagaaggatgagggCCTGGT-GGGAGTGATTTAATCATGG
i rheMac8.chr15                I 43 C 0
s macFas5.chr13                111146856 427 - 111193037 taggagacatctcatcgtcccttggctttatgatataattaggaggcttcctgattccttccagaaacaaaagacactaagcttccttcactgcttgcagaatcatgagtcaattaaacct--cttttatttacaaTAATAAAGAAAAGTAAAActgccaagaggagctgtgagatgtcttcaaggccttttcccctttgtcttggct-attagcacagggcttttttgtatgcaaatttctgaagtcttcttcaatttt-tccccttaaattgggttttgctttattactacatagtcag-cctgctatacagatac--ctgaaaaagtagaagcaggctca-gtagtggctagcaaacaaagattggaagggtttggagggattggagcatgatggaaagatgagggaCGGGGAGGGAGTGATTTAATTATGG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26455792 425 +  28977278 tgggagacagctcattgtcccttggccttctggtataattaggaggcttcctgactcctcccagaaacaaaagacactatgcttccttcacagcctgcagaatcccaagtcaattaaacct--cttttatttatgaTAATACAGAAAATTAgaactgcagagaggagctgtgaaatgtcttcaaggcctttttccctttgtcttggct-attagcacaggacttctttatatgcaaatttctgaagtcttcttgaatgtt-cccccttaaatcgggttttgtgttattgctacatagccaa-cctgctatagagatac--ctgaaaaagtagaagcaggttga-a-agtgggtagcaaacagagattgggatggtttggagggattagagaatgacagaaggatgagggCCTGGT-GGGAGTGATTTAATCATGG
i macNem1.NW_012012133v1       I 43 C 0
s cerAty1.NW_012000030v1         5651990 425 +   8072957 tgggagacagctcattgtcccttggccttctggtataattaggaggctccctgactcctcccagaaacaaaagacactatgcttccttcacagcctgcagaatccggagtcagttaaacct--cttttatttatgaTAATACAGAAAATTAgaactgcagagaggagctgtgaaatgtcttcaaggcctttttccatttgtcttggct-attagcacagggcttttttgtatgcaaatttctgaagtcttcttgaatgtt-cccccttaaatcgggttttgtgttattgctacatagccaa-cctgctatacagatac--ctgaaaaagtaggagcaggttga-a-agtgggtagcaaacagagattgggatggtttggagggattagagaatgacagaaggatgagggCCTGGT-GGGAGTGATTTAATCATGG
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3742554 429 - 108555830 tgggagacagctcattgtccctcggccttctggtataattaggaggctccctgactcctccctgaaacaaaagacactatgcttccttcacagcctgcagaatcccgagtcagttaaacct--cttttatttaCGATAATACAGAAAATTAgaactgcagagaggagccgtgaaatgtcttgaaggcctttttccatttgtcttggctaatttgcacagggcttctgtatatgcaagtttctgaagtcttcttgaattttccccccttatatcaggttttgtgttactactacatagccaACCCCActctagagatac--ctgaaaaagtagaagcaggctcagt-agtggctagcaaacaaagattggaagggtttggagggattggagaatgacagaaggaagagggCCTGGC-GGGAGTGATTTAATCATGG
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          168005 425 +   1331228 taggagacatctcgtcgtcccttggctttatgatataattaggaggcttcctgactcctccctgaaacaaaagacactatgcttccttcacagcctgcagaatcccgagtcagttaaacct--cttttatttaCGATAATACAGAAAATTAgaactgcagagaggagctgtgaaatgtcttgaaggcgtttttccatttgtcttggctaatttgcacagggcttttgtatatgcaagtttctgaag---tcttgaattttccccccttatatcaggttttgtgttattactacatagccaACCCCActctagagatac--ctgaaaaagtagaagcaggctca-t-agtggctagcaaacaaaggttggaagggtttggagggattggagaatgacagaaggaagagggCCTGGC-GGGAGTGATTTAATCATGG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           57694 427 +    168452 taggagacgtctcattgtcccttggctttatgatataattaggaggctttctgatgcctttgagaaacagaagacactaagcttgcttcacagcgtgcagaatcataagtcaattaaactt--attttatttacaaTAATACAGAAAAGTAAAActgccgagaggagctgtgaaatgtcttcaaggcctttttccctttgtcttggct-gttagcacagggcttttttatgtgcaaatttctaaagtcttcttcaatttt-tcccattaaattgggttttgcattattactccgtaggcag-cctgctatacagatac--ctgaaaaagtagaagcaggctca-gtagtggctagcaaacaaagattggaagggtttggagggattggagcatgacagaaagatgagggaCTGGGAGGGAGTGATTTAATTATGG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130422902 426 - 210400635 taggagacaactcattttcccttggccctttggtgtaatgaggaggctccctgattcctccctaaaacagaagaccct--gctttcttcacagattgcagaatcctgagtcaatgaaacct--cttttatttatgaTGATACAGAAAATTAGAACTGCAGGATGgagctgtgaaatgtctttaaggcctttctttctttgtcttgact-attagcatagggcttctttatatgcaaacttcagaagtctctttaaatttt-cccccttaaatggggttctgtgttattgctgcatagccaa-cctgcTAtataaatatagctgaaaaagtagaagcaggttca-gaagtgggtagcaaacaaaaatggggagggtttggagggattagagaaaaacagaaagatgagggCCTGGT-GGGAGTGATTTAATCTTgg
i calJac3.chr1                 C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I

a score=33936.000000
s hg38.chr14_GL000009v2_random     62686 8 +    201709 ATGGGTGG
s panTro5.chr9                  41742320 8 + 116767853 ATGGGTGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96095707 8 - 114479721 ATGGGTAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           28584 8 +     53730 ATGGGTGG
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   553837 8 - 111343173 ATGGAAGG
i rheMac8.chr15                C 0 I 1
s macFas5.chr13                111147283 8 - 111193037 ATGGGCGG
i macFas5.chr13                C 0 I 1
s macNem1.NW_012012133v1        26456217 8 +  28977278 ATGGAAGG
i macNem1.NW_012012133v1       C 0 I 1
s cerAty1.NW_012000030v1         5652415 8 +   8072957 ATGGAAGG
i cerAty1.NW_012000030v1       C 0 I 1
s chlSab2.chr12                  3742983 8 - 108555830 ATGGGAGG
i chlSab2.chr12                C 0 I 1
s manLeu1.NW_012106397v1          168430 8 +   1331228 ATGGGAGG
i manLeu1.NW_012106397v1       C 0 I 8
s colAng1.NW_012121088v1           58121 8 +    168452 ATGGGTGG
i colAng1.NW_012121088v1       C 0 C 0
s calJac3.chr1                 130423328 8 - 210400635 gtgggagg
i calJac3.chr1                 C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=13900.000000
s hg38.chr14_GL000009v2_random     62694 3 +    201709 GGG
s panTro5.chr9                  41742328 3 + 116767853 GGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96095715 3 - 114479721 GGG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           28592 3 +     53730 GGG
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   553846 3 - 111343173 GGG
i rheMac8.chr15                I 1 C 0
s macFas5.chr13                111147292 3 - 111193037 GGG
i macFas5.chr13                I 1 C 0
s macNem1.NW_012012133v1        26456226 3 +  28977278 GGG
i macNem1.NW_012012133v1       I 1 C 0
s cerAty1.NW_012000030v1         5652424 3 +   8072957 GGG
i cerAty1.NW_012000030v1       I 1 C 0
s chlSab2.chr12                  3742992 3 - 108555830 GGG
i chlSab2.chr12                I 1 C 0
s colAng1.NW_012121088v1           58129 3 +    168452 GGG
i colAng1.NW_012121088v1       C 0 I 3211
s calJac3.chr1                 130423336 1 - 210400635 --g
i calJac3.chr1                 C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e manLeu1.NW_012106397v1          168438 8 +   1331228 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=3168.000000
s hg38.chr14_GL000009v2_random     62697 5 +    201709 TGGAT
s panTro5.chr9                  41742331 5 + 116767853 TGGAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96095718 5 - 114479721 TGGAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           28595 5 +     53730 TGGAT
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   553849 1 - 111343173 ----T
i rheMac8.chr15                C 0 I 4
s macFas5.chr13                111147295 1 - 111193037 ----T
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26456229 1 +  28977278 ----T
i macNem1.NW_012012133v1       C 0 I 4
s cerAty1.NW_012000030v1         5652427 1 +   8072957 ----T
i cerAty1.NW_012000030v1       C 0 I 4
s chlSab2.chr12                  3742995 1 - 108555830 ----T
i chlSab2.chr12                C 0 I 3
e calJac3.chr1                 130423337 0 - 210400635 C
e colAng1.NW_012121088v1           58132 3211 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e manLeu1.NW_012106397v1          168438 8 +   1331228 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=154300.000000
s hg38.chr14_GL000009v2_random     62702 42 +    201709 GTGGAAGGGAAAAAGGGGTGGGTAGGGTGGGAGGGAGTAGAC
s panTro5.chr9                  41742336 42 + 116767853 GTGGAAGGGAAAAAGGGGTGGGTAGGTTGGGAGGGAGTAGAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96095723 42 - 114479721 GTGGAAGGGAAAAGGGGGTGGGTAGGGTGGGAGGGAGTAGAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           28600 40 +     53730 GTGGAA-GGAAAAAAgggtgggtagggtggga-ggagtagac
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   553854 41 - 111343173 GTGGAA-GGAAAAAGAggtgggtagggtggagaggagtaggc
i rheMac8.chr15                I 4 C 0
s macFas5.chr13                111147296 39 - 111193037 GTGGAA-GGAAATAAGG--GGGGAGGGTGGGAAGGAATAGGC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26456234 41 +  28977278 GTGGAA-GGAAAAAGAGGTGGGTAGGGTGGAGAGGAGTAGGC
i macNem1.NW_012012133v1       I 4 C 0
s cerAty1.NW_012000030v1         5652432 41 +   8072957 GTGGAA-GGAAAAAGAGGTGGGTAGGGTGGAGAGGAGTAGGC
i cerAty1.NW_012000030v1       I 4 C 0
s chlSab2.chr12                  3742999 41 - 108555830 GTGGAA-GGAAAAAGGGGTGGGTAGGGTGAGGAGGAGTAGGC
i chlSab2.chr12                I 3 C 0
s manLeu1.NW_012106397v1          168446 41 +   1331228 GTGGAA-GGAAAAAGGGGTGGGTAGGGTGAGGAGGAGTAGGC
i manLeu1.NW_012106397v1       I 8 C 0
s calJac3.chr1                 130423337 38 - 210400635 ---aaa-ggaaaagggagtgggtagggtggggaaaagtaggt
i calJac3.chr1                 C 0 C 0
e colAng1.NW_012121088v1           58132 3211 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=2441199.000000
s hg38.chr14_GL000009v2_random     62744 623 +    201709  
s panTro5.chr9                  41742378 619 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96095765 618 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           28640 609 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   553895 539 - 111343173  
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111147335 620 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26456275 539 +  28977278  
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5652473 539 +   8072957  
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3743040 544 - 108555830  
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          168487 544 +   1331228  
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           61343 632 +    168452  
i colAng1.NW_012121088v1       I 3211 I 358
s calJac3.chr1                 130423375 597 - 210400635  
i calJac3.chr1                 C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=3227444.000000
s hg38.chr14_GL000009v2_random     63367 813 +    201709  
s panTro5.chr9                  41742997 813 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96096383 813 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           29249 796 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   554434 823 - 111343173  
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111147955 824 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26456814 823 +  28977278  
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5653012 823 +   8072957  
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3743584 794 - 108555830  
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          169031 795 +   1331228  
i manLeu1.NW_012106397v1       C 0 C 0
s calJac3.chr1                 130423972 809 - 210400635  
i calJac3.chr1                 C 0 N 0
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=3326066.000000
s hg38.chr14_GL000009v2_random     64180  966 +    201709  
s panTro5.chr9                  41743810 1023 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96097196 1023 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           30045 1013 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   555257  995 - 111343173  
i rheMac8.chr15                C 0 I 3213
s macFas5.chr13                111148779 1021 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26457637  995 +  28977278  
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5653835  992 +   8072957  
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3744378 1015 - 108555830  
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          169826 1019 +   1331228  
i manLeu1.NW_012106397v1       C 0 C 0
e colAng1.NW_012121088v1           61975  358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=6876.000000
s hg38.chr14_GL000009v2_random     65146 2 +    201709 ga
s panTro5.chr9                  41744833 2 + 116767853 GA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96098219 2 - 114479721 GA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           31058 2 +     53730 GA
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111149800 2 - 111193037 ga
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26458632 2 +  28977278 GA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5654827 2 +   8072957 GA
i cerAty1.NW_012000030v1       C 0 I 20
s chlSab2.chr12                  3745393 2 - 108555830 GA
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          170845 2 +   1331228 GA
i manLeu1.NW_012106397v1       C 0 C 0
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=4021.000000
s hg38.chr14_GL000009v2_random     65148 3 +    201709 tgg
s panTro5.chr9                  41744835 3 + 116767853 TGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96098221 3 - 114479721 TAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           31060 3 +     53730 TGG
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111149802 3 - 111193037 tgg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26458634 3 +  28977278 AGG
i macNem1.NW_012012133v1       C 0 I 17
s chlSab2.chr12                  3745395 3 - 108555830 AGG
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          170847 3 +   1331228 AGG
i manLeu1.NW_012106397v1       C 0 C 0
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e cerAty1.NW_012000030v1         5654829 20 +   8072957 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=9497.000000
s hg38.chr14_GL000009v2_random     65151 70 +    201709 ttGGGGGCACCGGGAGGGTGGGGGG-GATTCTGGGGTGGAGAGGGTTGGAGGGAATCGGG-GGTGGGGaggg
s panTro5.chr9                  41744838 70 + 116767853 CTGGGGGCACGGGAAGGGTTGGGGG-GATTCTGGGGTGGAGATGGTTGGAGGGAATTGGG-GGTGGGGaggg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96098224 70 - 114479721 TTGGgga-gtggggagggttgggggtgattctggggcgaggagggttggaggggattggg-ggtggggaggg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           31063 43 +     53730 TCGGGGG-----------------------------TGGGGAGGGTTGGGGGGGATTGGGTGGTGAGGaggg
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111149805 41 - 111193037 -----------------------------GGAAGGGTGGGGAGAATTGGGGGGTATT-GG-GATGGGGAGAA
i macFas5.chr13                C 0 C 0
s chlSab2.chr12                  3745398 17 - 108555830 ---------------------------------------------TTAGGG----------GGTAGGGAGAA
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          170850 18 +   1331228 ---------------------------------------------TAGGGG--------T-GGTGGGGAGAA
i manLeu1.NW_012106397v1       C 0 C 0
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e cerAty1.NW_012000030v1         5654829 20 +   8072957 I
e macNem1.NW_012012133v1        26458637 17 +  28977278 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=4005286.000000
s hg38.chr14_GL000009v2_random     65221 1525 +    201709  
s panTro5.chr9                  41744908 1524 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96098294 1521 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           31106 1520 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111149846 1522 - 111193037  
i macFas5.chr13                C 0 I 20
s macNem1.NW_012012133v1        26458654 1519 +  28977278  
i macNem1.NW_012012133v1       I 17 C 0
s cerAty1.NW_012000030v1         5654849 1522 +   8072957  
i cerAty1.NW_012000030v1       I 20 C 0
s chlSab2.chr12                  3745415 1509 - 108555830  
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          170868 1499 +   1331228  
i manLeu1.NW_012106397v1       C 0 C 0
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975  358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=985702.000000
s hg38.chr14_GL000009v2_random     66746 461 +    201709 gaatagttgtgattaaaaggctggcagaaggatggacagtgaaggccaggcttacaaggtctcacatgaaaatgaggaaattactgggaacag-------gagccaaggtta-cttttgttttgctgtagcaaagaacatggctgcagggcgaccttgccctcgagatctgtgaaactttgaacttgagggtgatgattt----agtgca----tatctggtggaatgaacttctaggcagcatagcacaa-gggggatcctgtctgcatcaaacagcccgtgttct--tgtgtgaccgaggttatgtgtgaccgaggaaatgacctcaagttggaacttatattt--aaatgacaagcagagctcaaaagtttagaagcatttgcagcctggccaagtggtcaaaaagaaaagctgattttcagggggaaaattcatgaaggctccagaaatttgcataaaatggaggccagtgctaatag
s panTro5.chr9                  41746432 461 + 116767853 gaatagttgtgattaaaaggctggcagaaggatggacaatgaaggccaggcttacaaggtctcagatgaaaatgaggaaattactgggaacag-------gagccaaggtta-cttttgttttgctgtagcaaagaacatggctgcagggcgaccttgccctcgagatctgtgaaactttgaacttgagggtgatgattt----agtgca----tatctggtggaatgaacttctaggcagcatagcacaa-gggggatcctgtctgcatcaaacagcccgtgttct--tgtgtgaccgaggttatgtgtgaccgaggaaatgacctcaagttggaacttatattt--aaatgacaagcagagctcaaaagtttagaaccatttgcagcctggccaagtggtcaaaaagaaaagctgattttccgggggaaaattcatgaaggctccagaaatttgcataaagtggaggccaatgctaatag
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96099815 462 - 114479721 aaatagttgtgattaaaaggctggcagaaggatggacagtgaaggccaggcttacaaggtctcagatgaaaatgaggaaattactgggaacag-------gagccaaggtta-cttttgttttgctgtagcaaagaacatggctgcagggtgaccttgccctcgagatctgtgaaactttgaacttgagggtgacgattt----agtaca----tatctggtggaaagaacttctaggcagcatagcacaa-gggggatgctgtctgcatcaaacagcctgtgctct--tgtgttaccgaggttatgtgtgaccaaggaaatgacctcaagttggaacttatatttaaaaatgacaaacagagctcaaaagtttggaa-catttgcagcctggccaagtggtcaaaaagaaaagctgattttcagggggaaaattcatgaaggctccagaaatttgcataaaatggaggccagtgctaatag
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           32626 461 +     53730 aaatagttgtgattaaaaggctgacagaaggatgaacagtgaaggccagg-ttacaaggtctcagatgaaaatgaggaacttactgggaacag-------gagccaaggttaccttttgttttgctgtagcaaagaacatggctgcagggcga-cttgccctcaagatctgtgaaactttgaactcgagggtgatgattt----agtgca----tatctggtggaatgaccttctaggcagcatagcacaaggggggatcctgtctgcatcaaacagcctgtgctctcatgtgtgactgaggttatgtgtgaccgaggaaatgacctcaagttggaacttatattt--aaatgacaagcagagctcaaaagtttggaa-catctgtagcctggccaagtggttaaaaagaaaagctgattttca-ggggaaaattcatgaaggctccagaaacttgcataaaatggaggccagtgctaatgc
i gorGor5.CYUI01002030v1       C 0 C 0
s macNem1.NW_012012133v1        26460173 445 +  28977278 aaatagttgtgattaaaatgctgacagaaggagagacagtgaaggccaggcttatgaggtctcagatgaaaacgaggaacttactgagaacag-------gagccagggtta-cttttgttttgctgtagcaaagaacgtggctgcagggtgaccttgccctggagatctgtgaaactttgaacttgaggatgatgattc----agggtg----tatctggtggaatgaacttctagggagcaaatctcaa-gaggtgtcctgtctgtgtcaaacagcctgtgctct----------------tttgtgtgactgaagaaattacctcaagttggaacttatattt--aaatgacaagcagagctcaaaagtttggaa-tatttgcagcctggccaagtggtcaaaac-aaaagctgattttcagagggaaaattcaTGATGGCTTCAAAAATTTGCATAAAATGAAGGCCAGTGCTAATAG
i macNem1.NW_012012133v1       C 0 I 1475
s cerAty1.NW_012000030v1         5656371 445 +   8072957 aaacagttgtgattaaaatgctgacagaaggagggacagtgaaggccaggcttatgaggtctcagatgaaaactaggaacttactgggaacag-------aaaccaaggtta-cttttgttttgctgtagcaaagaacgtggctgcagggtgaccttgccctggagatctgtgaaactttgaacttgagggtgatgattc----agggtg----tatctggtggaatgaacttctaggcagcatagctcaa-gaggtgtcctgtctgtgtcaaacagcctgtgctct----------------tttgtgtgactgaagaaattacctcaagttggaacttatattt--aaatgacaagcagagctcaaaagtttggaa-tatttgcagcctggccaagtggtcaaaac-aaaagctgattttcagagggaaaattcatgatggcttcaaaaatttgcataaaatgaaggccagtgctaatag
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3746924 453 - 108555830 aaatagttgtgattaaaatgctgacagaaggagagacagtgaaggccaggcttatgaggtctcagatgaaaacaaggaacttactgggaacag-------gagccaaggtta-cttttgttttgctgtaggaaagaacgtggctgcagggtgaccttgccctagagatctgtgacacttggaacttgagggtgatgattcaatgagggtgatgatatctggtggaatgaacttctaggcagcaaatctcga-gaggtgtcctgtctgtgtcaaacagcctgtgctct----------------tttgtgtgaccgaggaaatgacctcaagttggaacttatattt--gaatgacaagcagaactcgaaaatttggaa-tatttgcagcctggccaagtggtcaaaac-gaaagctgattttcagagggaaaattcatgatggcttcaaaaatttgcataaaatgaaggccagtgctaatag
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          172367 459 +   1331228 aaatagttgtgattaaaatgctgacagaaggagagacagtgaaggccaggcttatgaggtctcagatgaaaacgaggaacttactgggaacaggagccaagagccaaggtta-cttttgttttgctgtaggaaagaacgtggctgcagggtgaccttgccctagagatctgtgaaacttggaacttgagggtgatgattcagtgagggtgatgatatctggtggaatgaacttctaggcagcaaatctcaa-gaggtgtcctgtctgtgtcaaacagcctgtgctct----------------tttgtgtgaccgaggaaatgaccttaaa-tggaacttatattt--aaatcacaagcagagctcaaaagtttggaa-tatttgcagcctggccaagtggtcaaaac-aaaagctgattttcagagggaaaattcatgatggcttcaaaaatttgcataaaatgaaggccagtgctaatag
i manLeu1.NW_012106397v1       C 0 C 0
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e macFas5.chr13                111151368  20 - 111193037 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=225661.000000
s hg38.chr14_GL000009v2_random     67207 135 +    201709 ccaagacaatggggggaaaaagccttggaggcatttcagagatggttgcagcagcccttggtgtcacagaccctggggcctaggagagaagaatggtttctggggccagccccatggccctgctgctgtgtgcag
s panTro5.chr9                  41746893 134 + 116767853 ccaaggcaat-gggggaaaaagccttggaggcatttcagagatgtttgcagcagcccttggtgtcacaggccctggggcctaggagagaagaatggtttccggggccagccccatggccctgctgctgtgtgcag
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96100277 134 - 114479721 ccaagacaat-ggggggaaaagccttggaggcatttcagagatgtttgcagcagcccttgctgtcacagtccctggggcctaggagagaagaatggtttccagggccagccccatggccctgctgctgagtgcag
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           33087 132 +     53730 tcaagacatt-gggggaaaaagccttggaggcatttcagagatgtttgtagcagcccttgctgt--caggctctggggcctaggagagaagaatggtttcctgggccagccccatgaccctgctgctgtgtgcag
i gorGor5.CYUI01002030v1       C 0 C 0
s cerAty1.NW_012000030v1         5656816 134 +   8072957 ccaagacaat-gggggagaaagccttggaggcattttagagatgtttgcagcagcccttgctgtcacaggccctgggacctaggagaaaaggatggtttcctgggccagcctcatggtcctgctgctgtgtgcag
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3747377 128 - 108555830 ccaagacaat-gggggagaaagccttggaggcatttcagagatgtttgcagcagcccttgctgtcacaggccctgg------ggagaaaataatggtttcctgggccagcctcatggtcctgctgctgtgtgcag
i chlSab2.chr12                C 0 I 24
s manLeu1.NW_012106397v1          172826 128 +   1331228 ccaagacaat-gggggagaaagccttggaggcatttcagagatgtttgcagcagcccttgctgtcacaggccctgg------ggagaaaagaatggtttcctgggccagcttcatggtcctgctgctgtgtgcag
i manLeu1.NW_012106397v1       C 0 C 0
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e macNem1.NW_012012133v1        26460618 1475 +  28977278 I
e macFas5.chr13                111151368  20 - 111193037 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=1500.000000
s hg38.chr14_GL000009v2_random     67342 1 +    201709 c
s panTro5.chr9                  41747027 1 + 116767853 c
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96100411 1 - 114479721 c
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           33219 1 +     53730 c
i gorGor5.CYUI01002030v1       C 0 C 0
s cerAty1.NW_012000030v1         5656950 1 +   8072957 c
i cerAty1.NW_012000030v1       C 0 I 62
s manLeu1.NW_012106397v1          172954 1 +   1331228 c
i manLeu1.NW_012106397v1       C 0 I 23
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e chlSab2.chr12                  3747505 24 - 108555830 I
e macNem1.NW_012012133v1        26460618 1475 +  28977278 I
e macFas5.chr13                111151368 20 - 111193037 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=12168.000000
s hg38.chr14_GL000009v2_random     67343 21 +    201709 ctcaggacactgctgcctgca
s panTro5.chr9                  41747028 21 + 116767853 ctcaggacactgctgcctgca
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96100412 21 - 114479721 ctcaggacactgctgcctgca
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           33220 21 +     53730 ctcaggacactgctgcctgca
i gorGor5.CYUI01002030v1       C 0 C 0
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e manLeu1.NW_012106397v1          172955 23 +   1331228 I
e chlSab2.chr12                  3747505 24 - 108555830 I
e cerAty1.NW_012000030v1         5656951 62 +   8072957 I
e macNem1.NW_012012133v1        26460618 1475 +  28977278 I
e macFas5.chr13                111151368 20 - 111193037 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=39649.000000
s hg38.chr14_GL000009v2_random     67364 40 +    201709 tcccagcagccgcagcacctgctccgaccttggctgaaag
s panTro5.chr9                  41747049 39 + 116767853 tcccagcagcc-cagctcctgctccgaccttggctgaaag
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96100433 40 - 114479721 tcccggcagccccatctcctgctctgaccttggctgaaag
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           33241 39 +     53730 tcccagcagccccagctcctgctccaa-cttggctgaaag
i gorGor5.CYUI01002030v1       C 0 C 0
s chlSab2.chr12                  3747529 40 - 108555830 tccctgcagctccagctcctgctctggccttgtctcaaag
i chlSab2.chr12                I 24 C 0
s manLeu1.NW_012106397v1          172978 40 +   1331228 tccttgcagctccagctcctgctctggccttgtctcaaag
i manLeu1.NW_012106397v1       I 23 C 0
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e cerAty1.NW_012000030v1         5656951 62 +   8072957 I
e macNem1.NW_012012133v1        26460618 1475 +  28977278 I
e macFas5.chr13                111151368 20 - 111193037 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=1182843.000000
s hg38.chr14_GL000009v2_random     67404 735 +    201709  
s panTro5.chr9                  41747088 736 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96100473 726 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           33280 714 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s cerAty1.NW_012000030v1         5657013 731 +   8072957  
i cerAty1.NW_012000030v1       I 62 I 8
s chlSab2.chr12                  3747569 734 - 108555830  
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          173018 734 +   1331228  
i manLeu1.NW_012106397v1       C 0 I 8
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e macNem1.NW_012012133v1        26460618 1475 +  28977278 I
e macFas5.chr13                111151368  20 - 111193037 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=3820.000000
s hg38.chr14_GL000009v2_random     68139 4 +    201709 ttgg
s panTro5.chr9                  41747824 4 + 116767853 ttgg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96101199 4 - 114479721 ttgg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           33994 4 +     53730 ttgg
i gorGor5.CYUI01002030v1       C 0 C 0
s chlSab2.chr12                  3748303 4 - 108555830 ttgg
i chlSab2.chr12                C 0 I 5
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e manLeu1.NW_012106397v1          173752 8 +   1331228 I
e cerAty1.NW_012000030v1         5657744 8 +   8072957 I
e macNem1.NW_012012133v1        26460618 1475 +  28977278 I
e macFas5.chr13                111151368 20 - 111193037 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=71638.000000
s hg38.chr14_GL000009v2_random     68143 153 +    201709 aggtcttagtcaagacgatggggaaaagtcattgaaggcatttcaTAGCTTCACTTCACAGTACTAATTTTCTGTATGAtcataacaaaaaggggtttaatcggctgatggttctgcaggctgt-aaaaaaaaaagcatagtgGCttggggaat
s panTro5.chr9                  41747828 153 + 116767853 gggtcttagccaagacgatgtggaaaagtcattgaaggcatttcaTAGCTTCACTTCACAGTACTAATTTTCTGTATGAtcataacaaaaaggggtttaattggctcatggttctgcaggctgc-aaaaaaaAAAAAACAGTGGCttggggaat
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96101203 154 - 114479721 gggTTTTAGCCAAGACGATGGGGAAAAGTCATTGAAGGTGTTTCATAGCTTCACTTCACTGTACTAATTTTCTGTATGAtcataacaaaaaggggtttaattggctcaaggttctgcaggctgtaaaaaaaaaaagcatagtgGCttggggaat
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           33998 149 +     53730 gggtcttagccaagacgatggagaaaagtcattgaaggcatttcatagcttcacttcgcAATACTAATTTTCTGTATGAtcataacaaaaaggggtttgattggctcatgg-tctgcatgctgt---aaaaaaaagcatagt-gtttggggaat
i gorGor5.CYUI01002030v1       C 0 C 0
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e manLeu1.NW_012106397v1          173752   8 +   1331228 I
e chlSab2.chr12                  3748307   5 - 108555830 I
e cerAty1.NW_012000030v1         5657744   8 +   8072957 I
e macNem1.NW_012012133v1        26460618 1475 +  28977278 I
e macFas5.chr13                111151368  20 - 111193037 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=283948.000000
s hg38.chr14_GL000009v2_random     68296 142 +    201709 tgtaagtaaggcatcactgtattttgcaaaatgagaaggacatgagatttggggaggcagggacagaataataagattcggctgtgtgtcgctatggaaactcatgtggaattgtaatcagaaatgttaaaattggggccag
s panTro5.chr9                  41747981 142 + 116767853 ggtaagtaaggcatcactgtattttgcaaagtgagaaggacatgagatttgaggaggcagggacagaataataagatttggctgtgtgtccgtatggaaactcatgtggaattgtaatcagaaatgttaaaagtggggccag
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96101357 142 - 114479721 ggtaagtaaggcatcactgtattttgcaaagtgagaaggacatgagatttggggaggcagagacagaGGAataagattcggctgtgtgtccctatggaaactcatgttgaattgtaatcagaaatgttaaaagtggggccag
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           34147 141 +     53730 ggtaagtaaggcatcaatgtattttgcaaagtgagaaggacatgagatttgtgg-ggcaggtacagaataataagatttggctgtgtgtccctgtggaaactcatgtggaattgtaatcagaaatgttgaatgtggggccag
i gorGor5.CYUI01002030v1       C 0 C 0
s macNem1.NW_012012133v1        26462093 138 +  28977278 tgtaggtaaggcattgttgtattttgcaaagtgagaagtacatgagattgggggaggcagggacag---aataagatttggctgtgtgtccctacagaaactcatgtggaattgtaattggaaattgtaaaagtgggg-cca
i macNem1.NW_012012133v1       I 1475 I 1
s cerAty1.NW_012000030v1         5657752 138 +   8072957 tgtaggtaaggcattgttgtattttgcaaagtgagaaggacatgagattgggggaggcagggacag---aataagattcggctgtgtgtccctacagaaactcatgtggaattgtaattggaaatggtaaaagtggga-cag
i cerAty1.NW_012000030v1       I 8 C 0
s chlSab2.chr12                  3748312 139 - 108555830 tgtaggtaaggcattgttgtattttgcaaattgaggaggacttgagattggaggaggcagggacag---aataagatttggctgtgtgtccctacagaaactcatgtggaattgtaattggaaattgtaaaagtggggccag
i chlSab2.chr12                I 5 C 0
s manLeu1.NW_012106397v1          173760 137 +   1331228 tgtaggtaaggcattgttgtattttgcaaattgagaaggacttgagattgggggaggcagggacag---aataagattcggctgtgtgtccctacagaaacttaggtggaa-cgtaatcagaaacgttagaagtggga-cag
i manLeu1.NW_012106397v1       I 8 C 0
e rheMac8.chr15                   556252 3213 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e macFas5.chr13                111151368  20 - 111193037 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=1926928.000000
s hg38.chr14_GL000009v2_random     68438 689 +    201709  
s panTro5.chr9                  41748123 690 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96101499 689 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           34288 675 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   559465 690 - 111343173  
i rheMac8.chr15                I 3213 I 22
s macNem1.NW_012012133v1        26462232 690 +  28977278  
i macNem1.NW_012012133v1       I 1 I 22
s cerAty1.NW_012000030v1         5657890 657 +   8072957  
i cerAty1.NW_012000030v1       C 0 I 22
s chlSab2.chr12                  3748451 689 - 108555830  
i chlSab2.chr12                C 0 I 11
s manLeu1.NW_012106397v1          173897 690 +   1331228  
i manLeu1.NW_012106397v1       C 0 I 11
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e macFas5.chr13                111151368  20 - 111193037 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=8675.000000
s hg38.chr14_GL000009v2_random     69127 10 +    201709 GTAGCAGGAa
s panTro5.chr9                  41748813 10 + 116767853 GTAGCAAGGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96102188 10 - 114479721 GTAGCAGGAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           34963  9 +     53730 gTAGCAGGa-
i gorGor5.CYUI01002030v1       C 0 C 0
s chlSab2.chr12                  3749151 10 - 108555830 GTAGTAGGAA
i chlSab2.chr12                I 11 I 2
s manLeu1.NW_012106397v1          174598 10 +   1331228 GTAGTAGGAA
i manLeu1.NW_012106397v1       I 11 I 2
e rheMac8.chr15                   560155 22 - 111343173 I
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e cerAty1.NW_012000030v1         5658547 22 +   8072957 I
e macNem1.NW_012012133v1        26462922 22 +  28977278 I
e macFas5.chr13                111151368 20 - 111193037 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=401784.000000
s hg38.chr14_GL000009v2_random     69137 164 +    201709 gggagtagcctgccacagaggcagaggctcatggaaaacctctactaaggcagtgcACCTGTGgttttgcacctgtggctttgcagggtttagcacctgctgctgctctcatgggctgggctggtgttgagtacctgaagcttttccatactgggggtgtgagc
s panTro5.chr9                  41748823 150 + 116767853 gggagtagcctgccacagaggcagaggctcatggataatctctactaaggcag--------------tgcacctgtggctttgcagggtttagcacctgcagctgctctcatgggctgggctggtgttgagtgcctgtagcttttccatactgggggtgtgagc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96102198 133 - 114479721 gggagtagcctgccacagaggcagaggctcatggaaaacctctactaaggcag--------------tgcacctgtggctttgcagggtttagcacctgcagctgcactcatgggctgggctggta-----------------ttccatactgggggtgtgaac
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           34972 148 +     53730 gggagtagcctgccgcagaggaagaggctcatggaaaaactctactaatgcag--------------tgcacctgtggctttgc-gggtttagcacctgtagctgctctcatggactgggctgatgtt-agtgcctgtagcttttccatactgggggtgtgagc
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   560177 150 - 111343173 GGGACTagcctactgcagaagcagaggctcatggaaaacctctacaagggcag--------------tgcccctgtggctttgcaggctttagtccccatggctgctctcatgggctgggctgctgttgagtgcctgtagcttttccacactgagggtgtgagc
i rheMac8.chr15                I 22 C 0
s macNem1.NW_012012133v1        26462944 150 +  28977278 gggagtagcctactgcagaggcagaggctcatggaaaacctctacaagggcag--------------tgcccctgtggctttgcaggctttagtccccatggctgctctcatgggctgggctgctgttgagtgcctgtagcttttccacactgagggtgtgagc
i macNem1.NW_012012133v1       I 22 C 0
s cerAty1.NW_012000030v1         5658569 150 +   8072957 gggagtagcctactgcagaggcagaggctcatggaaaacctctactagggcag--------------tgcccctgtagctttgcaggctttagtccccatggctgctctcatgggctgggctggtgttgagtgcctgtagcttttccatactgagagtgcaagc
i cerAty1.NW_012000030v1       I 22 C 0
s chlSab2.chr12                  3749163 150 - 108555830 ggcagtaacctgctacagaagcagaggctcatggaaaacctctactagggcag--------------tgcacctgtggctttgcaggctttagcccccatggctgctttcatgggctgggctgctgttgagtgcctgtagcttttccatactgagtgtgggagc
i chlSab2.chr12                I 2 C 0
s manLeu1.NW_012106397v1          174610 150 +   1331228 gggagtaacctgctacagaagcagaggctcatggaaaacctctactagggcag--------------tgcacctgtggctttgcaggctttagcccccatggctgctttcatgggctgggctgctgttgagtgcctgtagcttttccacactgagtgtgggagc
i manLeu1.NW_012106397v1       I 2 C 0
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e macFas5.chr13                111151368  20 - 111193037 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=132856.000000
s hg38.chr14_GL000009v2_random     69301 39 +    201709 tgttggtgggtccatgactcttggatctggaggatggtg
s panTro5.chr9                  41748973 39 + 116767853 tgttggcgggtccatgactcttgggtctggaggatggtg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96102331 39 - 114479721 tcttggtgggtccatgactcttggggctggaggatggtg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           35120 36 +     53730 tgttggt-ggtctatga--cctgggtctggaggatggtg
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   560327 39 - 111343173 tgttggtgggtctatgactctggggtctggagaatggtg
i rheMac8.chr15                C 0 I 7
s macFas5.chr13                111151388 39 - 111193037 tattggtgggtctatgactctggtgtctggaggatggtg
i macFas5.chr13                I 20 I 7
s macNem1.NW_012012133v1        26463094 39 +  28977278 tgttggtgggtctatgactctggggtctggagaatggtg
i macNem1.NW_012012133v1       C 0 I 7
s cerAty1.NW_012000030v1         5658719 39 +   8072957 ttttggtgggtctatgactctggggtctggaggatggtg
i cerAty1.NW_012000030v1       C 0 I 7
s chlSab2.chr12                  3749313 39 - 108555830 ttttggtgggtctatgactctggagtctggaggatggtg
i chlSab2.chr12                C 0 I 7
s manLeu1.NW_012106397v1          174760 39 +   1331228 ttttggtgggtctatgactctggagtctggaggatggtg
i manLeu1.NW_012106397v1       C 0 I 7
e colAng1.NW_012121088v1           61975 358 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=885957.000000
s hg38.chr14_GL000009v2_random     69340 212 +    201709 gcgtgggggctccaagcccatattttccttctgtactgccctagtagaggttttccaaggggatctgtctctgcctcaggcttctgcttggaAACAgtgggtggtggatatggggaggtgggcggatccttcaccaacagttaagcacaatcttcttgatgctgatctcctgatagtgagctctcatgagatatagttgtataacaggatgt
s panTro5.chr9                  41749012 212 + 116767853 gcgtgggggctccaagcccatattttccttctgcactgccctagtagaggttttccaaggggatctgcctctgcctcaggcttctgcttggaAACAgtgggtggtggatatggggtggtgggtggatccttcaccaacagttaagcacaatcttcttgatgctgatctcctgaaagtgagctctcatgagatctagttgtataacaggatgt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96102370 209 - 114479721 gcgtgggggctccaagcccatattttccttctgcactgccctagtagaggttttccaagaggatctgtctctgccgcaggcttttgcttggaAACAGTTGGTGGTGGATATGGGGTGGTgggcggatccttcaccgtcagttaagcac---catcttgatgctgatctcctgatagtgagctctcatgagatctaattgtataacaggatat
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           35156 210 +     53730 tcat-ggggttccaagcccatattttccttctgcactg-cctagtagaggttttccaagaggatctgcctctgtctcaggcttctgcttggaAACAgtgggtggtggatatgggatagtgggcggatccttcaccaacagttaagcaccatcttcttcatgctgatctcctgatactgagctctcatgagatctagttgtataacaggatgt
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   560373 212 - 111343173 gcgtgggggctccaagcccatcttttccttctgtactgccctagtagaggttttccaagaggctctgcctctgcatcaggcttctgcctggaAACAATAGGGGGTGGATGTGGGGTtgggggcggatccttcaccagtagttaagcaccatcttcttgatgctgatctcctgacactgagttctcatgagatctggttgtttaacgggatgt
i rheMac8.chr15                I 7 C 0
s macFas5.chr13                111151434 212 - 111193037 gcgtgggggctccaagcccatgttttccttctgtattgcactagtagaggttttccaagaggctctgcctctgcctcaggcttctgcttgCAAACAGCGGGGGGTGGATATGGGGTGGTgggtggatccttcaccagtagttaagcaccatctttttgatgctgatctcctgatagtgggttctcatgagatctagtggtataacaggatat
i macFas5.chr13                I 7 C 0
s macNem1.NW_012012133v1        26463140 212 +  28977278 gcgtgggggctccaagcccatattttccttctgtactgccctagtagaggttttccaagaggctctgcctctgcatcaggcttctgcctggaAACGATAGGGGGTGGATGTGGGGTtgggggcggatccttcaccagtagttaagcaccatcttcttgatgctgatctcctgacactgagttctcatgagatctggttgtttaacgggatgt
i macNem1.NW_012012133v1       I 7 C 0
s cerAty1.NW_012000030v1         5658765 212 +   8072957 gcctgggggctccaagcccatattttccttctgcactgccctagtagaggttttccaagaggttctgcctctgcctcaggcttccgccaggaAACAATAGGGGGTGGATGTGGGGTGgggagcggattcttcaccagtagttaagcaccatcttcttgatgctgatctcctgacactgagttctcatgagatctggttgtttaacgggatgt
i cerAty1.NW_012000030v1       I 7 C 0
s chlSab2.chr12                  3749359 212 - 108555830 gtgtgggggctccaggcccatattttccttctgtactgccctagtagaggttttccaagaggctctgcctctgcctcaggcttctgtttggaAACAGTACGGGGTGGATGAGGGGTATTgggtggatccttcaccaatagttaagcatcaccttcttgatgctgatctcctgacactgagttatcaggagatcttgttgtgtaagaggatgt
i chlSab2.chr12                I 7 C 0
s manLeu1.NW_012106397v1          174806 212 +   1331228 gtatgggggctccaggcccatattttccttctgtactgccctagtagaggttttccaagaggctctgcctctgcctcaggtttctgcttggaAACAGTACAGGGTGGATGAAGGGTATTgggtggatacttcaccaatagttaagcatcaccttcttgatgctgatctcctgacactgagttctcaggagatcttgttgtgtaagaggatgt
i manLeu1.NW_012106397v1       I 7 I 15387
s colAng1.NW_012121088v1           62333 210 +    168452 gcgtgggggcctcaagcccatgttttccttctgcattgcactagtagaggttttccaagaggctctgcctctgcctcaggctgctgcttgTAAACAGT-GGTGGTGG-TATGGGGTGGTgggtggatccttcaccagtagttaagcaccatcttcttgatgctgatctcctgatagtgggttctcatgagatctagtggtataaaaggatat
i colAng1.NW_012121088v1       I 358 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=20981.000000
s hg38.chr14_GL000009v2_random     69552 8 +    201709 ctcacctc
s panTro5.chr9                  41749224 8 + 116767853 cgcacctc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96102579 8 - 114479721 cacacctg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           35366 8 +     53730 cacacctc
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   560585 8 - 111343173 ggcacctc
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111151646 8 - 111193037 aacacttc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26463352 8 +  28977278 ggcacctc
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5658977 8 +   8072957 ggcacctc
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3749571 8 - 108555830 ggcacctc
i chlSab2.chr12                C 0 C 0
s colAng1.NW_012121088v1           62543 8 +    168452 aacacctc
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e manLeu1.NW_012106397v1          175018 15387 +   1331228 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=2554963.000000
s hg38.chr14_GL000009v2_random     69560 674 +    201709  
s panTro5.chr9                  41749232 675 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96102587 675 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           35374 668 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   560593 660 - 111343173  
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111151654 666 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26463360 660 +  28977278  
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5658985 665 +   8072957  
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3749579 651 - 108555830  
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          190405 673 +   1331228  
i manLeu1.NW_012106397v1       I 15387 C 0
s colAng1.NW_012121088v1           62551 660 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=17171.000000
s hg38.chr14_GL000009v2_random     70234 3 +    201709 tct
s panTro5.chr9                  41749907 3 + 116767853 tct
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96103262 3 - 114479721 tct
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36042 3 +     53730 tct
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   561253 3 - 111343173 tct
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111152320 3 - 111193037 tct
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464020 3 +  28977278 tct
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5659650 3 +   8072957 tct
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3750230 3 - 108555830 tct
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          191078 3 +   1331228 ttt
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           63211 3 +    168452 tct
i colAng1.NW_012121088v1       C 0 C 0
s rhiRox1.KN297240v1               36374 3 +     85661 tct
i rhiRox1.KN297240v1           N 0 I 227
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=3785.000000
s hg38.chr14_GL000009v2_random     70237 1 +    201709 a
s panTro5.chr9                  41749910 1 + 116767853 a
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96103265 1 - 114479721 a
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36045 1 +     53730 a
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   561256 1 - 111343173 a
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111152323 1 - 111193037 a
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464023 1 +  28977278 a
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5659653 1 +   8072957 a
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3750233 1 - 108555830 a
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          191081 1 +   1331228 g
i manLeu1.NW_012106397v1       C 0 I 34
s colAng1.NW_012121088v1           63214 1 +    168452 a
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               36377 227 +     85661 I

a score=160754.000000
s hg38.chr14_GL000009v2_random     70238 44 +    201709 agcagcaaagctgaagagttgtccggcctacgtcgaacagcctg
s panTro5.chr9                  41749911 44 + 116767853 agcagcaaagctcaagagctgtcctgcctacgtcgaacagcctg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96103266 44 - 114479721 agcagcaaagctcaagagctgtcctgcctacgtcaaacagcctg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36046 44 +     53730 agcagcaaagctcaagagttgtcctgcctacattgaacagcctg
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   561257 44 - 111343173 agcagcaaagctcaagagttgtcttacctacctcgaacaacctg
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111152324 44 - 111193037 agcagcaaagctcaagagttgtcctgcctacattgaacagccca
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464024 44 +  28977278 agcagcaaagctcaagagttgtcttacctacctcgaacaacctg
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5659654 44 +   8072957 agcagcaaagctcaagagttgtcctgcctatgtcgaacagcctg
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3750234 44 - 108555830 agcagcaaagctcaagagttgtcttgcctgtgtcgaacagcctg
i chlSab2.chr12                C 0 C 0
s colAng1.NW_012121088v1           63215 44 +    168452 agcagcaaagctcaagagttgtcctgcctacgttgaacagccca
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e manLeu1.NW_012106397v1          191082 34 +   1331228 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               36377 227 +     85661 I

a score=722127.000000
s hg38.chr14_GL000009v2_random     70282 182 +    201709 tgctcctatgtgtgatgaaagaaattaccataagttggaacttatatttaaatgagaagcagagcttcaacatttggaaaatttgtaatatggacaaatggtcaaaaagaaaagctgattttcagggggaaaa-tcaagaagccttcagatatttgcctaaaaaggagcccagtgctaataat
s panTro5.chr9                  41749955 182 + 116767853 cgctcctatgtgtcatcaaagaaacgaccataagttggaacttatatttaaatgagaagcagagcttcaacatttggaaaatttgtaatctggacaactggtcaaaaagaaaagctgattttcagggggaaaa-tcaagaaggcttcggatgtttgcataaaaaagagcccagtgctaataat
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96103310 182 - 114479721 cgctcctatgtgtcatcaaagaaatgaccataagttggaacttatatttaaatgagaagcagagcttcaacatttggaaaatttgtaatctggacaactggtcaaaaagaaaagctgattttcagggggaaaa-tcaagaaggctttggatatttgcataaaaaagagcccagtgctaataat
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36090 170 +     53730 tgcacctatgtgtgatcaaagaaatgaccataagttggaacttatatttaaatgagaagcagagcttaaacatt--ggaaatttgtaat--------ctggtccaaaagaaaagctgattttcagggggaaca-tcaagaaggctt-ggatatttgcat-aaaaggatcccagtgccaataat
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   561301 183 - 111343173 tggtattatatgtggccaaagaaatgaccttaagttggaacttgtatttaaatgagaagcagagcttaaacctttggaaaatttgcaacctggccaagtggtcaaaaagaaaagctgattttcagggggaaaattcaagaaggcttcggatatttgcataaaaaggatcccagtgctaataat
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111152368 182 - 111193037 tgctcttatgtgtgatcaaagaaatgaccataagttggaaattatatttaaatgagaagcagagcttaaacttttggaaaatttgcaaactggacaagtggtccaaaagaaaagctgattttcagggggaaaa-tcaagagggcttcacatatttgcataaaaagggtcccggtgctaataat
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464068 183 +  28977278 tggtattatatgtggccaaagaaatgaccttaagttggaacttgtatttaaatgagaagcagagcttaaacctttggaaaatttgcaacctggccaagtggtcaaaaagaaaagctgattttcagggggaaaattcaagaaggcttcggatatttgcataaaaaggatcccagtgctaataat
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5659698 183 +   8072957 tggtattatatgtggccaaagaaatgaccttaagttggaatttgtatttaaatgagaagcagagcttaaacctttggaaaatttgcaacctggccaagtggtcaaaaagaaaagctgattttcagggggaaaattcaagaaggcttcggatatttgcataaaaaggatcccagtgctaataat
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3750278 183 - 108555830 tggtattatatgcggccaaagaaatgaccttaagttggaacttatatttaaatgagaagcagagcttaaacctttggaaaatttgcaacctggccaagtggtcaaaaagaaaagctgattttcagggggaaaattcaagaaggctttggatatttgcataaaaaggatcccagtgctaataat
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          191116 182 +   1331228 tggttttctgtgtgaccaaataaataacctcaagtagaaattcatatttaaaagagaagcagagcttgaaagtttggaaaatttgcagcctggccaagtggtcaaaaacaaaagctgattttcagtgggaaaattcaagacagcttcagaaatttgtattaaatggagtccagtgctaatag-
i manLeu1.NW_012106397v1       I 34 C 0
s colAng1.NW_012121088v1           63259 182 +    168452 tgctcttatgtgtgatcaaagaaatgaccataagttggaaattatatttaaatgagaaggagagcttaaacttttggaaaatttgcaaactggacaaatggtccaaaagagaagctgattttcagggggaaaa-tcaagagggcttcgcatatttgcataaaaagggacccagtgctaataat
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               36377 227 +     85661 I

a score=4664.000000
s hg38.chr14_GL000009v2_random     70464 1 +    201709 t
s panTro5.chr9                  41750137 1 + 116767853 t
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96103492 1 - 114479721 t
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36260 1 +     53730 t
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   561484 1 - 111343173 t
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111152550 1 - 111193037 t
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464251 1 +  28977278 t
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5659881 1 +   8072957 t
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3750461 1 - 108555830 t
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          191298 1 +   1331228 c
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           63441 1 +    168452 t
i colAng1.NW_012121088v1       C 0 C 0
s rhiRox1.KN297240v1               36604 1 +     85661 t
i rhiRox1.KN297240v1           I 227 I 118
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=511643.000000
s hg38.chr14_GL000009v2_random     70465 117 +    201709 caagacaatgggaaaaaggccttgaaggcttttcagagac-tttgtagcagcccttgctgtcactggccctggggtttaggagaaaagaatagt-----------------ttcctggcccagccccatggctcc
s panTro5.chr9                  41750138 118 + 116767853 caagacaatggaaaaaaggccttgaaggcatttcagagacttttgtagcagcccttgctgtcactggccctggggtttaggagaaaagaatagt-----------------ttcctggcccagccccatggctcc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96103493 118 - 114479721 caagacaatggaaaaaaggccttgaaggcatttcagagacctttgtagcagcccttgctgtcactggccctggggtttaggagaaaagaatagt-----------------ttcctggcccagccccatggctcc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36261 118 +     53730 caagacaatgggaaaaaggccttgaaggcatttcagagacctttgtagcagaccttgctgtcacgggccctggggcctaggagaaaagaatagt-----------------ttcctggcccagccccatggctcc
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   561485 118 - 111343173 caagacaatgggaaaaaggccttgaaggcatttcagagatcttcctagcagcccttgctgtcactagccctggggcttaggagaaaagaatgtt-----------------ttcctgggccagccccatgacccc
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111152551 118 - 111193037 caagacaatgggaaaaaggccttgaaggcatttcaaagctctttgaagcagcccttgctgtcattggccctgggacttaggtgaaaagcatgtt-----------------ttcctgggccagccccatggcccc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464252 118 +  28977278 caagacaatgggaaaaaggccttgaaggcatttcagagatcttcctagcagcccttgctgtcactagccctggggcttaggagaaaagaatgtt-----------------ttcctgggccagccccatgacccc
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5659882 118 +   8072957 caagacaatgggaaaaaggccttgaaggcatttcagagatcttcctagcagcccttgctgtcactagccctggggcttaggagaaaagaatgtt-----------------ttcctgggccagccccatggcccc
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3750462 118 - 108555830 caagacaatgggaaaaaggccttgaaggcatttcagagatcttcctagcagcccttgctgtcactagccctggggcttaggagaaaagaatgtt-----------------ttcctgggccagccgcatgacccc
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          191299 135 +   1331228 caagataatgggaaaaaggccttgaaggcatttcagagacctttgcagcagcccttgctgtcacaggccctgaagcctaggacagaaaaatggttttctaggacataatggttcctggcccagccccattgtcct
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           63442 118 +    168452 caagacaatgggaaaaaggccttgaagacatttcaaagacctttgaagcagcccttgctgtcactggccctggggcttaggtgaaaaaaatggt-----------------ttcctgggccagtcccgtggcccc
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               36605 118 +     85661 I

a score=5005.000000
s hg38.chr14_GL000009v2_random     70582 1 +    201709 a
s panTro5.chr9                  41750256 1 + 116767853 a
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96103611 1 - 114479721 a
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36379 1 +     53730 a
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   561603 1 - 111343173 a
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111152669 1 - 111193037 a
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464370 1 +  28977278 a
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5660000 1 +   8072957 a
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3750580 1 - 108555830 a
i chlSab2.chr12                C 0 C 0
s colAng1.NW_012121088v1           63560 1 +    168452 a
i colAng1.NW_012121088v1       C 0 C 0
s rhiRox1.KN297240v1               36723 1 +     85661 a
i rhiRox1.KN297240v1           I 118 I 492
e saiBol1.JH378105              64682074 15923 -  72162052 I
e manLeu1.NW_012106397v1          191434 0 +   1331228 C
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=1243126.000000
s hg38.chr14_GL000009v2_random     70583 318 +    201709 ctgctgtgtgcagcctcaggacactgctgcctgcatccctgcagctccttttcc------agctccagccatggatgaaagatgcacaggtacagcttgtgtcactgcttcagaggatgcaagctccaagccttggtagcttccacatagtgttaagccagcaggtgcataaagcacaggactagaagcttcagagccttggtctggactccagaggatatatcagaaatcctgagtgtctaaccagaagcttttccaagaggcagagcctcatggtaaacctctactcgggc-------------agtacaaaaggaaagtatagggttggagtcc
s panTro5.chr9                  41750257 330 + 116767853 ctgctgtgtgcagcctcaggacactgctgcctgcatccctgcagctccctttcc------agctctaactatggatgaaagatgcacaggtacagcttgcatcactgcttcagaggatgcaagctccaagccttggtggcttccatatagtgttaagccagcaggtgcataaagcacaggactagaagcttcagagcctt-gtctcgactccagaggatatatcagaaagcctgagtgcctagccagaagcttttccaagagacagagcctcatggtaaacctctactcgggcagtacagaaggaaagtacagaaggaaagtatagggttggagtcc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96103612 330 - 114479721 ctgctgtgtgcagcctcaggacactgctgcctgcatccctgcagctccctttcc------agctctagctatggatgaaagatgcacaggtacagcttgcatcactgcttcagaggatgcaagctccaagccttggtggcttccatatagtgttaagccagcaggtgcataaagcacaggactagaagcttcagagcctt-gtctcgactccagaggatatataagaaagcctgagtgcctagccagaagcttttccaagagacagagcctcatggtaaacctctactcgggcagtacagaaggaaagtacagaaggaaagtataaggttggagtcc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36380 313 +     53730 ctgctgtgtgcagcctcaggatactgctgcctgcatccctgc-gctccatctcc------agctccagccatggatgaaagatgcacaggtacagcttgtgtcactgcttcagaggatgcaagctccaagccttggtggcttccacatagtgttaagccagcaggtgcataaagca-aggacta-aagcttcagatccttcatctagactccagaggatatattggaaagcctgagtgtcaagccagaagcttttcc-agaggcagagcctcatggtaaacctctactggggc-------------agtacagaaggagagtatagggttgga-tcc
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   561604 323 - 111343173 ctgctctgtgcagcctcaggacactgctccctgcacccctacacctccatctccagctctagctccagccatggctgaaagatgcacaggtacagcttgggtcactgcttcag-gggtgtaagctccaagtcttggtggcttccatgtactgtcaaaccagcaggtgcccagagcacaaaactagaggcttcggagccttcatctagactccaaaagatgtatgggaaagcctgggtgtccaggcagaagcttttccaacaggcagagcctcacagtaaacctctgctcgggc-------------attaaagaagaagcatatagggttggagccc
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111152670 311 - 111193037 ctgctgtgtgcagcctcaggacactgctgcctgcatccctg------------cagctccagctccagccatggctgaaagatgcacaggtacagcttgggtcaccgcttcag-gggtgcaagctccaagccttggtggcttccacatagtgttaagccagcaggtgcacagagcacaagactagaggcttcagagccttcgtctacactacagaggatgtatcagaaagcctgggtgtccagcgagaagcttttccaagaggcagagcctcatggtaaacctctacttgggc-------------agaacagaaagagagtatagggttggagtca
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464371 323 +  28977278 ctgctctgtgcagcctcaggacactgctccctgcacccctacacctccatctccagctctagctccagccatggctgaaagatgcacaggtacagcttgggtcactgcttcag-gggtgtaagctccaagtcttggtggcttccatgtactgtcaaaccagcaggtgcccagagcacaaaactagaggcttcggagccttcatctagactccaaaagatgtatgggaaagcctgggtgtccaggcagaagcttttccaacaggcagagcctcacagtaaacctctgctcgggc-------------attaaagaagaagcatatagggttggagccc
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5660001 323 +   8072957 ctgctgtgtgcagcctcaggacactgctccctgcacccctacacctccatctccagctctagctccagccatggctgaaagatgcagaggtacagcttgggtcactgcttcag-gggtgtaagctccaagtcttggtggcttccatgtactgtcaaaccagcaggtgcccagagcacaaaactagaggcttcggagccttcatctagactccagaagatgtatgggaaatcctgcgtgtccaggcagaagcttttccaacaggcagagcctcacagtaaacctctgctcgggc-------------attaaagaagaagcatatagggttggagccc
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3750581 323 - 108555830 ctgctttgtgcagcctcaggacactgctggctgcacccctacacctccatctccacctctagctccagccatggctgaaagatgcacaggtatagcttgggtcactgcttcag-gggtataagctccaagtcttggtggcttccatgtactgtcaaaccagcaggtgcccagagcacaaaactagaggcttcggagccttcatctagactccaaaagatgtatgggaaagcctgggtgtccaggcaaaagcttttccaacaagcagagcctcacagtaaacctctgctcgggc-------------attaaagaagaagcatatagggttggagccc
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          191434 309 +   1331228 cttctgtgtgcagccttaggatactgctgcctgcatccctgtagctcc------------cgctccagccatggctgagagatgcacaggtacagcttgggtcgctgcttcag-gggtgcaagctccaagccttggtggcttccacatagtgttaagccagcaggtgcata-agcacaagacgagaaactttggagtcctcatctagact-cagagtatgtagggaaagtcctgggtttgaaggcagaagcttttccaacaggcagagcctcatggtaaacctctactaggac-------------aatacagaaggaacatacagggtgggagccc
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           63561 311 +    168452 ctgctgtgtgcagcctcaggacactgctgcctgcatccctg------------cagctccagctccagccatggctgaaagatgcacaggtacagcttgggtcactgcttcag-gggtacaagctccaagccatggtggcttccacgtagtattaagccagcaggtgcacagagcacaagactagaggtttcagagccgtcatctacactacaaaggatgtatcagaaagcctgggtgtccagcgagaagcttttccaagaggcagagcctcatggtaaacctctactcaggc-------------agtacagaaggaaagtatagggttggagtcc
i colAng1.NW_012121088v1       C 0 I 1
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               36724 492 +     85661 I

a score=2574.000000
s hg38.chr14_GL000009v2_random     70901 1 +    201709 c
s panTro5.chr9                  41750587 1 + 116767853 c
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96103942 1 - 114479721 c
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36693 1 +     53730 c
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   561927 1 - 111343173 c
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111152981 1 - 111193037 a
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464694 1 +  28977278 c
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5660324 1 +   8072957 c
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3750904 1 - 108555830 c
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          191743 1 +   1331228 c
i manLeu1.NW_012106397v1       C 0 C 0
e colAng1.NW_012121088v1           63872 1 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               36724 492 +     85661 I

a score=729055.000000
s hg38.chr14_GL000009v2_random     70902 180 +    201709 catacagggaggcaccattttccagaccccagtatcatagacccaccagctgcttgcacccttagtgttgaaaagctacaggcactcaacaccagcctagccaatgagggc-agctgtagggg-gaagattctgcaatgccacatgtgcagagctgcccaaggccttgggatcccagccatc
s panTro5.chr9                  41750588 180 + 116767853 catacagggaggcacaattttccagacggcagtttcatagacccaccagctgcttgcacccttagtgttgaaaagctgcaggcactcaacaccagcctagccaatgagggc-agctgtagggg-gaagattctgcaatgtcacaggtgcagagctgcccaaggccttgggatcccagccatc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96103943 180 - 114479721 catacagggaggcacaattttccagacggcagtttcatagacctaccagctgcttgcacccttagtgttgaaaagctgcaggcactcaacaccagcctagccaatgagggc-agctgtagggg-gaagattctgcaatgccacaggtgcagagctgcccaaggccttgggatcccagccatc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36694 178 +     53730 catacagggaggcaccattttgcagaccccagtttcatagacccaccaactgcttgca-ccttagtgttgaaaagctacaggcactcaacaccagcctagccaatgagggc-agctgt-gggg-aaagattctgcaatgccacaggtgcagagctgcccaaggccttgggatcccagctgtc
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   561928 178 - 111343173 catacaggcaggcactattttccagaccccagattcatagacccaccaacagcttgcacccttagtgttgaaaagctactggcactcaatagcagcccagcccatgagggc-a-cttt-gagg-aaagaccccgccatgccacaggtgcagagctgcccaagaccttgggagcccagccatc
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111152982 180 - 111193037 cacagagggaggcaccattttccagaccccagttgcatagacccaccaactgctcgcacccttagtgttgaaaagctacaggcattcaacaccagcccagcccatgagggc-agctat-aaggaaaagattctgcggtggcaccgctgcagagctgcccaagaccttgggatcccagccatc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464695 178 +  28977278 catacaggcaggcactattttccagaccccagattcatagacccaccaactgcttgcaccctcagtgtggaaaagctacaggtactcaacaccagcccagcccatgagggc-a-cttt-gagg-aaagaccccgccatgccacaggtgcagagctgcccaagaccttgggagcccagccatc
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5660325 178 +   8072957 catacaggcaggcactattttccagaccccagattcatagacccaccaacagcttgcacccttagtgttgaaaagctactggcactcaacagcagcccagcccatgagggc-a-cttt-gagg-aaagaccccgccatgccacaggtgcagagctgcccaagaccttgggagcccagccatc
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3750905 178 - 108555830 catacaggcaggcactattttccagaccccagattcatagacccatcaacagcttgcatccttagtgttgaaaagctactggtactcaacagcagcccagcccatgagggc-a-cttc-gagg-aaagaccccgccatgccacaggtgcagagctgcccaagaccttgggagcccagccatc
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          191744 179 +   1331228 cacacagggagccaccattctccaggccccagattcatagacccaccaacagcctgcacccttagtgttgaaaagctactgacagtcaacaacagcccagcccatgagggcaa-cttt-gggg-aaagaccctgccatgccccaggcgctgagctgcccaagactttgggagaccagccatc
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           63873 180 +    168452 catacagggaggcaccattttccataccccagttttatagacccaccagctgcttgcacccttagtgttgaaaagctacaggcattcaacaccatcccagcccatgagggc-agctat-agggaaaagattctgcggtggcacaggtgcagagctgcccaagaccttgggatcccagccatc
i colAng1.NW_012121088v1       I 1 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               36724 492 +     85661 I

a score=6006.000000
s hg38.chr14_GL000009v2_random     71082 1 +    201709 a
s panTro5.chr9                  41750768 1 + 116767853 a
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96104123 1 - 114479721 a
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36872 1 +     53730 a
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   562106 1 - 111343173 a
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111153162 1 - 111193037 a
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464873 1 +  28977278 a
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5660503 1 +   8072957 a
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3751083 1 - 108555830 a
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          191923 1 +   1331228 a
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           64053 1 +    168452 a
i colAng1.NW_012121088v1       C 0 C 0
s rhiRox1.KN297240v1               37216 1 +     85661 a
i rhiRox1.KN297240v1           I 492 I 6
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=21398.000000
s hg38.chr14_GL000009v2_random     71083 6 +    201709 caaaac
s panTro5.chr9                  41750769 6 + 116767853 caccac
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96104124 6 - 114479721 caccac
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36873 6 +     53730 caccac
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   562107 6 - 111343173 caccac
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111153163 6 - 111193037 caccac
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464874 6 +  28977278 caccac
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5660504 6 +   8072957 caccac
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3751084 6 - 108555830 caccac
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          191924 6 +   1331228 aagcac
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           64054 6 +    168452 caccag
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37217 6 +     85661 I

a score=2956.000000
s hg38.chr14_GL000009v2_random     71089 2 +    201709 cc
s panTro5.chr9                  41750775 2 + 116767853 cc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96104130 2 - 114479721 cc
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           36879 2 +     53730 cc
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   562113 2 - 111343173 ac
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111153169 2 - 111193037 ca
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26464880 2 +  28977278 ac
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5660510 2 +   8072957 ac
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3751090 2 - 108555830 ac
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          191930 2 +   1331228 cc
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           64060 1 +    168452 -c
i colAng1.NW_012121088v1       C 0 I 1
s rhiRox1.KN297240v1               37223 1 +     85661 -c
i rhiRox1.KN297240v1           I 6 I 18462
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I

a score=1212805.000000
s hg38.chr14_GL000009v2_random     71091 289 +    201709 tgtgctctggatgt-ggacatagattc-caaaaagatgatttggagctgtatgatggaatgcctggcctgctgggtttttgacttgcagggggtttgtaagtcccatctgtgttttgtgcttctttctgggaaatttctactttttggcttggaatgcttacccaatgcctgtacaatcattgtaacttggaagtggttaacttgctttgtatttcagaggctca-gggcagaagatatggcagccttgtctcagagaagactttggcctttggacatttgagttactgctg
s panTro5.chr9                  41750777 289 + 116767853 tgtgctctggatgt-ggatgtagattc-caaaaagatgatttggagctgtatgatggaatgactggcctgctgggtttttggcttgcaggcggtttgtaagtcccatctgtgttttgtccttctttctggcaaatttcttctttttggcttggaatccttacccaatgcctgtacaatcatggtaccttggaagtggttaacttgctttgtatttcagaggctca-gggcagaaggtatggcagccttgtctcagaagagactttgggctttggacatttgagtaaatgttg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96104132 289 - 114479721 tgtgctctggatgt-ggatgtagattc-caaaaagatgatttggagctgtatgatggaatgactggcctgctgggtttttggcttgcaggcggtttgtaagtcccatctgtgttttgtccttctttctggcaaatttcttctttttggcttggaatgcttacccaatgcctgtacaatcattgtaccttggaagtggttaacttgctttgtatttcagaggctca-gggcagaaggtatggcagccttgtctcagaagagactttgggctttggacatttgagtaaatgttg
i panPan2.chr13                C 0 I 339
s gorGor5.CYUI01002030v1           36881 288 +     53730 tgtgctctggatgt-ggacatagattc-caaaaagatgatttggagctgtatgatggaatgactggcctgctgggtttttgccttgcagggagtttgtaagtcccatctgtgttttgtgcttctttctggcaaatttcttctttttggctgggaatgcttacccaatgcctgtacaatcattgcaccttggaagtggttaacttgc-ttgtatttcagaggctca-gggcaaaagatatggcagccttgtctcagaagagactttgggctttggatatttgagtaaatgctg
i gorGor5.CYUI01002030v1       C 0 I 11
s rheMac8.chr15                   562115 280 - 111343173 tgtgctctggatgtgggacgtagattcaaaaaaagatgatttggagctgtaggatggaatgactggcctgctggatttttgacttgcatggagtctgtaagtcctatctgtgttttgtgcttctttatggcaaatttcttctttttggctgggaatgcttacccaatgcctgaacaatcattgtatcttggaagtagttaactt------------agaggcttgggggcagaagggactgtagccttgtctcagatgagacttcaggctttggacatgtgagtaaatgctg
i rheMac8.chr15                C 0 I 11
s macFas5.chr13                111153171 290 - 111193037 tgtgctctggatgt-ggacatagattc-cgaaaagatgatttggaactgtagtatggaatgactggcctgctgggtttttgacttgcatggggtctgtaagttccatctgtgttttgtctttctttctggcaaatttcttctttctggcttggaatgcttacccaatccctgcacaatcattgtgccttggaagtaattaacttgctttgtatttcagaggctcaggggcagaagggactgcagccttgtctcagaagagactttgggctttggacatttgagtaaatgctg
i macFas5.chr13                C 0 I 11
s macNem1.NW_012012133v1        26464882 280 +  28977278 tgtgctctggatgtgggacgtagattcaaaaaaagatgatttggagctgtaggatggaatgactggcctgctggatttttgacttgcatggagtctgtaagtcctatctgtgttttgtgcttctttatggcaaatttcttctttttggctgggaatgcttacccaatgcctgaacaatcattgtatcttggaagtagttaactt------------agaggcttgggggcagaagggactgtagccttgtctcagatgagacttcaggctttggacatgtgagtaaatgctg
i macNem1.NW_012012133v1       C 0 I 11
s cerAty1.NW_012000030v1         5660512 280 +   8072957 tgtgctctggatgtgggacgtagattcaaaaaaagatgatttggagctgtatgatggaatgactggtctgctggatttttgacttgcatggggtctgtaagtcccatctgtgttttgtgcttctttatggcaaatttattctttttggctgggaatgcttacccaatgcctgaacaatcattgtaccttggaagtagttaactt------------agaggctcaggggcagaagggactgtagccttgtctcagatgagactttgggctttggacatgtgagtaaatgctg
i cerAty1.NW_012000030v1       C 0 I 11
s chlSab2.chr12                  3751092 280 - 108555830 tgtgctctggatgtgggacgtagattcaaaaaaagatgatttggagctgtaggatggaatgactggcctgctggatttttgacttgcatggagtctgtaagtcccatcagtgtttcgtgcttctgtatggcaaatttcttctttttggctgggaatgcttacccaatgcctgaacaatcattgtaccttggaagtagttaactt------------agaggctcaggggcagaagggactgtagccttgtctcagatgagactttgggctttggacatgtgagtaaatgctg
i chlSab2.chr12                C 0 I 11
s manLeu1.NW_012106397v1          191932 291 +   1331228 tctgctctggatgtgggatgtagattcaaaaaaa-atgatttggagctgtaggatggaatgactggcctgctgggtttttgacttgcatggggtctgtaagtcccgtctgtgttttgtgcttctttctagcaaatttcttctttttggctgggaatgcttacccaatgcctgtacaagcattgtaccttggaagtagttaacttgctttgtatttcagaggctcaggggcagaagggactgcagccttgtctcagatgagactttgggcttcagacatttgagtaaatgctg
i manLeu1.NW_012106397v1       C 0 I 11
s colAng1.NW_012121088v1           64062 288 +    168452 tgtgctctggatgt-ggacatagattc-caaaaagatgatttggaactgtaggatggaatgactggcctgctgggtttttgacttgcatggggtctgtaagttccatctgtgttttgtccttcttcctggcaaatttcttctttctggcttggaatgcttacccaatccctgtacaatcattgtaccttggaagtaattaactt-gcttgtatttcagaggctca-gggcagaagggactgcagccttgtctcagaagagactttgggctttggacatttgagtgaatgctg
i colAng1.NW_012121088v1       I 1 I 11
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=5500.000000
s hg38.chr14_GL000009v2_random     71380 1 +    201709 g
s panTro5.chr9                  41751066 1 + 116767853 g
i panTro5.chr9                 C 0 I 322
s panPan2.chr13                 96104760 1 - 114479721 g
i panPan2.chr13                I 339 C 0
s gorGor5.CYUI01002030v1           37180 1 +     53730 g
i gorGor5.CYUI01002030v1       I 11 C 0
s rheMac8.chr15                   562406 1 - 111343173 g
i rheMac8.chr15                I 11 C 0
s macFas5.chr13                111153472 1 - 111193037 g
i macFas5.chr13                I 11 C 0
s macNem1.NW_012012133v1        26465173 1 +  28977278 g
i macNem1.NW_012012133v1       I 11 C 0
s cerAty1.NW_012000030v1         5660803 1 +   8072957 g
i cerAty1.NW_012000030v1       I 11 C 0
s chlSab2.chr12                  3751383 1 - 108555830 g
i chlSab2.chr12                I 11 C 0
s manLeu1.NW_012106397v1          192234 1 +   1331228 g
i manLeu1.NW_012106397v1       I 11 C 0
s colAng1.NW_012121088v1           64361 1 +    168452 g
i colAng1.NW_012121088v1       I 11 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=4095.000000
s hg38.chr14_GL000009v2_random     71381 1 +    201709 a
s panPan2.chr13                 96104761 1 - 114479721 a
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           37181 1 +     53730 a
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   562407 1 - 111343173 a
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111153473 1 - 111193037 a
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26465174 1 +  28977278 a
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5660804 1 +   8072957 a
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3751384 1 - 108555830 a
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          192235 1 +   1331228 a
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           64362 1 +    168452 a
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I
e panTro5.chr9                  41751067 322 + 116767853 I

a score=725530.000000
s hg38.chr14_GL000009v2_random     71382 191 +    201709 cattgggggactgtagagaatgcatcattgtattttgcagtatgagaagggtgtgaga-ttggggggccaaagg-agaataatacgatttggctctgtgtccctaccaaaactcatgtggaattataatggggaatgttaagtgtggggc-----ttcgtagaaggtgatttaatcatggTAGAGAATGGGGGTTGGA
s panTro5.chr9                  41751389 192 + 116767853 cattgggagactgtagaaaatgcatcattgtattttgtactatgagaaggatgtgaga-ttggggggccaaagggagaataatatgatttggctctgtgtccctaccaaaactcatgtggaattgtaatggggaatgttaaatgtggggc-----ttggtagaagatgatttaatcatggTAGAGAATGGGGGTTGGA
i panTro5.chr9                 I 322 C 0
s panPan2.chr13                 96104762 192 - 114479721 cactgggggactgtagagaatgcatcattgtattttgcagtaagagaaggttgtgaga-ttggggggccaaagggagaataatatgatttggctctgtgtccctaccaaaactcatgtggaattataattgggaatgttaaatgtggggc-----ttggtagaaggtgatttaatcatagTAGAGAATGGGGGTTGGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           37182 192 +     53730 -cttgggggactctagggaaggcatcattgtgttttgcaatatgagaaagacatgaactttgggggaccagggacagaataatatgttttggctctgtgtctctaccaaaactcatgtggaattttaatgggaaatgttaaaggtggggg-----ctggtggaaggtgatttaatcatggtggagagtggaggttgga
i gorGor5.CYUI01002030v1       C 0 I 371
s rheMac8.chr15                   562408 198 - 111343173 ctttggtggactgtagagaaggcatcattgaattttgcagtgtgagaacgacatgagatttcgggggccaggggcagaataatatgatctggctctgtgcccctaccaaaactcatgtgtaattgtaatggggaatgttaaagctggggcttggtttggtggaaggtgatttaatcatggtggACAGTGGGGTTTGGA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111153474 178 - 111193037 ctttggggaactgtagagaaggcatcgttgtattttgcagtatgagaagaacatgagact--ggggggcaaggggagaataatatgatttggctctgtgtccctaccaaaactcatgtggaattgtaatgggaaatgttaaatgtgaggc-----tcagtagaaggtgatttaatcatgatggac-------------
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26465175 193 +  28977278 ctttggtggactgtagagaaggcatcattgaattttgcagtgtgagaacgacatgagatttcgggggccaggagcagaataatatgatctggctctgtgcccctaccaaaactcatgtgtaattgtaatggggaatgttaaagctggggc-----ttggtggaaggtgatttaatcatggtggACAGTGGGGTTTGGA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5660805 193 +   8072957 ctttggaggactgtagagaaggcatcattgtattttgcagtgtgagaaaaacatgagatttgggtggccaggggcagaataatgtgatctggccctgtgcccctgccaaaactcatgtgtaattgtaatggagaatgttaaagctggggc-----ttggtggaaggtgatttaatcatggtggACAGTGGGGTTTGGA
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3751385 193 - 108555830 ctttggtggactgtagagaagacatcattgtattttgcagtgtgagaaggacatgagatttcgggggccaggggcagaataatgtgatctggctctgtgcccctaccaaacctcatgtgtaattgtactggggaatgttaaagctggggc-----ttggtggaaggtgatttaatcatggtggACAGTGGGGGTTGGA
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          192236 193 +   1331228 ctttgggggactttagagaaggcatcattgtattttgcaaagtgagagtaacatgagatttggaaggccaggggcagaaCAatatgatttggctctgcatcccgaccaaaactcatgcagaattgtgatggggaatgttaaaagtggtgc-----ttggtaaaaggtgatttaatcatggtggACAGTGGGGATTAGA
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           64363 183 +    168452 cattggggaactgtagagaaagcattattgtattttgcagtatgagaagaacgtgagact-ggggggccaaggggagaataatatgatttggctccgtgtccctaccaaaacccatgtggaattgtaatggggaatgttaaatgtggggc-----tcagtagaaggtgatttaatcatgatggacactg---------
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=5076.000000
s hg38.chr14_GL000009v2_random     71573 2 +    201709 AG
s panTro5.chr9                  41751581 2 + 116767853 AG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96104954 2 - 114479721 AG
i panPan2.chr13                C 0 C 0
s rheMac8.chr15                   562606 2 - 111343173 AG
i rheMac8.chr15                C 0 I 2
s macFas5.chr13                111153652 2 - 111193037 ac
i macFas5.chr13                C 0 I 2
s macNem1.NW_012012133v1        26465368 2 +  28977278 AG
i macNem1.NW_012012133v1       C 0 I 2
s cerAty1.NW_012000030v1         5660998 2 +   8072957 AG
i cerAty1.NW_012000030v1       C 0 I 2
s chlSab2.chr12                  3751578 2 - 108555830 AG
i chlSab2.chr12                C 0 I 2
s manLeu1.NW_012106397v1          192429 2 +   1331228 AG
i manLeu1.NW_012106397v1       C 0 I 24
e colAng1.NW_012121088v1           64546 0 +    168452 C
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I
e gorGor5.CYUI01002030v1           37374 371 +     53730 I

a score=27113.000000
s hg38.chr14_GL000009v2_random     71575 21 +    201709 GGGGATGTGGGAGAAtggagg
s panTro5.chr9                  41751583 21 + 116767853 TGGGATGTGGGGGAAtggagg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96104956 21 - 114479721 GGGGATGtggaggaatggaga
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           37745 20 +     53730 GGGGAtgtgggagaatgg-gg
i gorGor5.CYUI01002030v1       I 371 C 0
s rheMac8.chr15                   562610 21 - 111343173 TGGGTGGGGGAAGAAtggggg
i rheMac8.chr15                I 2 C 0
s macFas5.chr13                111153656  7 - 111193037 tgggtgg--------------
i macFas5.chr13                I 2 C 0
s macNem1.NW_012012133v1        26465372 21 +  28977278 TGGGTGGGGGAAGAAtggggg
i macNem1.NW_012012133v1       I 2 C 0
s cerAty1.NW_012000030v1         5661002 21 +   8072957 TGGGTGGGGGAAGAATtgggg
i cerAty1.NW_012000030v1       I 2 C 0
s chlSab2.chr12                  3751582 21 - 108555830 TGGgtgtgggaagaatggggg
i chlSab2.chr12                I 2 C 0
e colAng1.NW_012121088v1           64546  0 +    168452 C
e saiBol1.JH378105              64682074 15923 -  72162052 I
e manLeu1.NW_012106397v1          192431 24 +   1331228 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=3141431.000000
s hg38.chr14_GL000009v2_random     71596 816 +    201709  
s panTro5.chr9                  41751604 814 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96104977 813 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           37765 811 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   562631 808 - 111343173  
i rheMac8.chr15                C 0 I 128
s macFas5.chr13                111153663 764 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26465393 816 +  28977278  
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5661023 815 +   8072957  
i cerAty1.NW_012000030v1       C 0 C 0
s chlSab2.chr12                  3751603 815 - 108555830  
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          192455 813 +   1331228  
i manLeu1.NW_012106397v1       I 24 C 0
s colAng1.NW_012121088v1           64546 775 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=5302.000000
s hg38.chr14_GL000009v2_random     72412 3 +    201709 tcc
s panTro5.chr9                  41752418 3 + 116767853 tca
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96105790 3 - 114479721 tca
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           38576 3 +     53730 tcc
i gorGor5.CYUI01002030v1       C 0 C 0
s macNem1.NW_012012133v1        26466209 3 +  28977278 ccc
i macNem1.NW_012012133v1       C 0 I 118
s cerAty1.NW_012000030v1         5661838 3 +   8072957 ccc
i cerAty1.NW_012000030v1       C 0 I 1
s chlSab2.chr12                  3752418 3 - 108555830 ccc
i chlSab2.chr12                C 0 C 0
s manLeu1.NW_012106397v1          193268 3 +   1331228 tcc
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           65321 3 +    168452 tcc
i colAng1.NW_012121088v1       C 0 C 0
e rheMac8.chr15                   563439 128 - 111343173 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e macFas5.chr13                111154427 0 - 111193037 C
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=219233.000000
s hg38.chr14_GL000009v2_random     72415 110 +    201709 tgtgtggggcctccaagccca------------------------------------------------------------------------------------------------------tat-actttttctgctctgccctattagaggttttcctagtggctctgcctcttcctcaggcttctgcccggaAACAgtga-ggggtgtgg
s panTro5.chr9                  41752421 110 + 116767853 tgtgtggggcctccaagccca------------------------------------------------------------------------------------------------------tat-attttttctgctctgccctagtagaggttttcctagtggctctgcctctgcctcaggcttctgcctggaAACggtga-ggggtgtgg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96105793 110 - 114479721 tgcgtggggcctccaagccca------------------------------------------------------------------------------------------------------tat-attttttctgctctgccctagtagaggttttcctagtggctctgcctctgcctcaggcttctgcctggaAACAgtga-ggggtgtgg
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           38579 108 +     53730 tgtgtggggcctccaagctca------------------------------------------------------------------------------------------------------tac-attttttctgcactgccctagtagagg-tttcctagtggctctgcctctgcctcaggcttctgcctggaAACAgtgg-ggggtg-gg
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111154427 211 - 111193037 TGCGTGGACCATCCAAGCACAAatatatatatttgtattatatacatatatatttgtattatatacatatatatttatattatatacatatatatttgtattttta-tatatatatatatatTTTt-tttctttttccactgccctagtagaggctttccaagaggctctgcctctgcctcaggcttttgtttggaATCAgtga-ggggtgggg
i macFas5.chr13                C 0 C 0
s cerAty1.NW_012000030v1         5661842 110 +   8072957 aacatgggggatcagagccca------------------------------------------------------------------------------------------------------tat-tttccttctgcactgccctagtagaggttttccaagaggctctgcctttgcaacaggcctctgcctagaAAGAGTGG-AGGTTGGGG
i cerAty1.NW_012000030v1       I 1 I 2
s chlSab2.chr12                  3752421 110 - 108555830 tgcatgggggatctgagccca------------------------------------------------------------------------------------------------------tat-tttccttctgcactgccctagtagaggttttccaagaggctctgcctttgcaacaggcttctgcctagaAAGAGTGG-AGGTTGGGG
i chlSab2.chr12                C 0 I 2
s manLeu1.NW_012106397v1          193271 111 +   1331228 tgtgtgggggctccaagccca------------------------------------------------------------------------------------------------------tat-tttccttctgcactgccctagtagaggttgtccaagaggctttgcctctgcaacaggcttctacctggaAACAGTGGTGGggtgggg
i manLeu1.NW_012106397v1       C 0 I 2
s colAng1.NW_012121088v1           65324 167 +    168452 tgtgtggagcatccaagcacaaatatacatatttgtattatatacacacata----------------------------------------------tatttgtattctatacatatatatatatatttctttttccactgccctagtagaggctttccaagaggctctgcctctgcgtcaggcttctgcttggaATCAGtga-ggggtggtg
i colAng1.NW_012121088v1       C 0 C 0
e rheMac8.chr15                   563439 128 - 111343173 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e macNem1.NW_012012133v1        26466212 118 +  28977278 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=2591163.000000
s hg38.chr14_GL000009v2_random     72525 658 +    201709  
s panTro5.chr9                  41752531 653 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96105903 653 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           38687 656 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   563567 641 - 111343173  
i rheMac8.chr15                I 128 C 0
s macFas5.chr13                111154638 647 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26466330 644 +  28977278  
i macNem1.NW_012012133v1       I 118 C 0
s cerAty1.NW_012000030v1         5661954 646 +   8072957  
i cerAty1.NW_012000030v1       I 2 C 0
s chlSab2.chr12                  3752533 644 - 108555830  
i chlSab2.chr12                I 2 N 0
s manLeu1.NW_012106397v1          193384 652 +   1331228  
i manLeu1.NW_012106397v1       I 2 C 0
s colAng1.NW_012121088v1           65491 648 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=1614094.000000
s hg38.chr14_GL000009v2_random     73183 540 +    201709  
s panTro5.chr9                  41753184 533 + 116767853  
i panTro5.chr9                 C 0 I 3079
s panPan2.chr13                 96106556 533 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           39343 512 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   564208 559 - 111343173  
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111155285 529 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26466974 538 +  28977278  
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5662600 538 +   8072957  
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          194036 527 +   1331228  
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           66139 519 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=129490.000000
s hg38.chr14_GL000009v2_random     73723 35 +    201709 t------ccagccttggctgaaagatgcacaggtacagctt
s panTro5.chr9                  41756796 35 + 116767853 t------ccagccatggctgaaagatgcacaggtacagctt
i panTro5.chr9                 I 3079 C 0
s panPan2.chr13                 96107089 35 - 114479721 t------ccagccatggctgaaagatgcacaggtacagctt
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           39855 35 +     53730 t------ccagccatggttgaaagatgcacaggtacagctt
i gorGor5.CYUI01002030v1       C 0 I 3054
s rheMac8.chr15                   564767 35 - 111343173 t------ccagccataactgaaagatatacaggtacggctt
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111155814 35 - 111193037 t------ccagccatgactgaaagatgcacaggtacggatt
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26467512 35 +  28977278 t------ccagccatgactgaaagatgcacaggtacggctt
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5663138 35 +   8072957 t------ccagccatgactgaaagatgcgcaggtacggctt
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          194563 35 +   1331228 t------ccagccatgactgaaagatgcacaggtacggctt
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           66658 41 +    168452 tccagaaccagccatgactgaaagatgcacaggtacagctt
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=473518.000000
s hg38.chr14_GL000009v2_random     73758 151 +    201709 gcatcactgcttcag-gggtgcaagcttcaaggcttggtggcttccacatagtgttaagccagcagctgcacacagcacaaaactagaagcttgcaagcctttgtctagactccagagtatgtacggaaaaacctgggtgttcacacaaaat
s panTro5.chr9                  41756831 151 + 116767853 gcatcactgcttcag-gggtgcaagcttcaagccttggtggcttccacatagtgttaagccagcagctgcacagagcacaaaactagaggcttgggagcctttgtctagactccagagtatgtaaggaaaaacctgggtgttcaggcagaat
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96107124 150 - 114479721 gggtcactacttcagagggtgcaagctgcaagccttggtggcttccacatagtgttaagccagcaggtgcacagagcac-aaactagaggc-tgggatcctttgtctggactccagagtatgtatggaaaaacctgggtgtccaggtcgaaa
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           42944 147 +     53730 gcatcactgcttca--gggtgcaagcttcaagccttggtggcttccccatagtgttaagccagcagctgcacagaggacaaaactaga-gcttggaagcc--tgtctagactccagagtatgtacggaaaaacctgggtgttcaggcagaag
i gorGor5.CYUI01002030v1       I 3054 C 0
s rheMac8.chr15                   564802 151 - 111343173 gggtcactgcttcag-gggtgcgagctgcaagccttggtggcttctacatagtgttaagccaacaggtgcacagagcaaaagactagaaccttgggaaccttcatctggactgcagagcatgtacagaaaaacctgggtttcaaggcagaag
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111155849 152 - 111193037 gggtcactgcttcagagggtacaagctgcaagccttggtggcttccatattgtgttaagccagcaggtgcacagagcacaagactggaggctggagatccttcatctagactccagagtatgtatggaaaaacctgggtgtccgggttgaaa
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26467547 151 +  28977278 gggtcactgcttcag-gggtgcgagctgcaagccttggtggcttctacatagtgttaagccaacaggtgcacagagcaaaagactagaaccttgggaaccttcatctggactgcagagcatgtacagaaaaacctgggtttcaaggcagaag
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5663173 151 +   8072957 gggtcactgcttcag-gggtgcgagctgcaagccttggtggcttctacatagtgttaagccaacaggtgcacagaacaaaagactagaaccttgggagcctttgtttagactgcagagcatgtacagaaaaacctgggtttcaaggcagaag
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          194598 151 +   1331228 gggtcactgcttcag-gggtgcgagctgcaagccttggtggcttctacatagtgttaagccaacaggtgcacagagcaaaagactagaaccttgggaaccttcatctagactgcagagcatgtacagaaaaacctgggtttcaaggcagaag
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           66699 152 +    168452 gggtcacagcttcagaggatgcaagctccaagccttggtggcttccacattgtgttaagacagcagacgcacagagcacaagactggaggctggagatccttcatctagactccagagtatgtgtggaaaaacctgggtgtctgggtttaaa
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=5500.000000
s hg38.chr14_GL000009v2_random     73909 1 +    201709 c
s panTro5.chr9                  41756982 1 + 116767853 c
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96107274 1 - 114479721 c
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           43091 1 +     53730 c
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   564953 1 - 111343173 c
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111156001 1 - 111193037 c
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26467698 1 +  28977278 c
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5663324 1 +   8072957 c
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          194749 1 +   1331228 c
i manLeu1.NW_012106397v1       C 0 C 0
s nasLar1.chr9                    493853 1 + 124503471 c
i nasLar1.chr9                 N 0 N 0
s colAng1.NW_012121088v1           66851 1 +    168452 c
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=1162156.000000
s hg38.chr14_GL000009v2_random     73910 364 +    201709 ttttccaagaggcagagcctcatgggaaacttttactagggcagtaccgaaggagaatttagggctg-gagtccc-taaatatggaggcaccattctccagactccagattcatagactcaccaacagctggcacccttagtatggaaatgctacaggcactcaacatcagcccagcccatgagggcagctgtggggtatagaccctgcacagccacaggtgtagagctgcccaaggccttggaagcccaggcatcacacacctgtgctctagatgtgagatgtagatt-cagaaaagatgatttggagctgcaggattcaatgactggcctgctgggtttttgacttgcatggggtctgtaagtcc
s panTro5.chr9                  41756983 364 + 116767853 ttctccaagaggcagagcctcatgggaaacctttactagggcagcacagaaggatactatagggctg-gagtccc-taaatatggaggcaccattctccagactccagattcatagacccaccaacagctggcacccttagtgtgggaaagctacaggcactcaacaccagcccagcccatgagggcagctgtgggggatagaccctgcacagccacaggcgcagagctgcccaaggccttgggagcccaggcatcacacacctctgctctagatgtgagatgtagatc-cagaaaagatgatttggagctgtaggattcaatgactggcctgctgggtttttgacttgcatggggtcagtaagtcc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96107275 355 - 114479721 ttttccaagaggcagaacct---------cctttactagggcagtacagaaggaacatatagggttg-gaa-ccc-catacagggaggcaccattctgcaaacgccagattcatagactcactagcagcttgcaccctgattgtggaaaagctataggtactcaacaccagcccaacccatgagggcaactgtggaggttagaccctgcaaagtcacaggtgcagacctgcccaaggccttgggagcccaggcctcatacccttgtgctctggatgtgggatctggattaaaaaaaaaatgatttggagctgtaggattcaatgactggcctgttgggtttttaacttatatggggtctgtaagtcc
i panPan2.chr13                C 0 I 4746
s gorGor5.CYUI01002030v1           43092 359 +     53730 ttttccaagaggcagag-ctcatgggaaacctttactagggcagtacagaaggataatata-ggctg-gagtccc-taaatatggaggcaccattctccagaccccagattcatagacccaccaacagctggcacccttagtgtggaaaagctacaggcactcaacaccagcccagcccgtgagggcagctgtgggggatagaccctgcacagccacaggtgcagagctgcccaagaccttgggagcccagccatgacacacctgtgctctggatg-gagatgtcattc---gaaaagatgatttggaactgtaggattcaatgactggcctgctgggtttttgacttgcatggggtctgtaagtcc
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   564954 362 - 111343173 ttttccaagagacagaccctcatgggacacctttactagggcagtacagaaggaacatatagggttg-gaa-ccc-cacacatggaagcaccattctgcaaaccccagattcatagacctaccaagagcttgcacccttggtgtggaaaagttacaggtactcaacactagcccagccaatgagggcagctgtgggggaaagaccctgcaaagccacaagtgcagagctgcccaaggccttgggagcccagccatcacacccctgtgctctggatgtgggatttagact-ga-aagagatgatttggaactgtacaatggaatgactggtctgctgggtttttgacttgcatggggtctgtaagtcc
i rheMac8.chr15                C 0 I 171
s macFas5.chr13                111156002 364 - 111193037 ttttccaagaggaagagcctcatgggaattctttactagggcaatacagaaggaatatacagggttgttac-ccc-cacacagggaggcaccattctgcaaacaccagatccatagactcactaacagcttgcaccctcagtgtggaaaagctacaggtactcaacaccagcccagcccatgagggcaactgtgggggttagaccctgcaaagccacaggtgcagacccgcccaagtacttgggagcccaggcctcacacccttgtgctctggatgtgggatctggatt-cacaaaagatgatttggagctgttgggttctatgactggtctgctgagtttttgacttgcatgcggtctgtaagtcc
i macFas5.chr13                C 0 I 6238
s macNem1.NW_012012133v1        26467699 362 +  28977278 ttttccaagagacagaccctcatgggacacctttactaggtcagtacagaaggaacatacagggttg-gaa-ccc-cacacatggaggcaccattctgcaaaccccagattcatagacctaccaagagcttgcacccttggtgtggaaaagttacaggtactcaacactagcccagccgatgagggcagctgtgggggaaagaccctgcaaagccacaagtgcagagctgcccaaggccttgggagcccagccctcacacccctgtgctctggatgtgggatttagact-ga-aagagatgatttggagctgtacaatggaatgactggtctgctgggtttttgacttgcatggggtctgtaagtcc
i macNem1.NW_012012133v1       C 0 I 171
s cerAty1.NW_012000030v1         5663325 361 +   8072957 ttttccaagagacagaccctcatgggacacctttactagggcagtacagaaggaacatatagggttg-gaa-ccc-cacacacggaggcaccattctgcaaaccccagattcatagacccacgaacagcttgcacccttggtgtggaaaagttacaggtactcaacactagcccagccgatgagggcagctgtgggggaaagaccctgcaaagccacaagtgcagagctgcccaaggtcttgggagcccagccatcacacccctgtgctctggatgtgggatttagact-ga-aagagatgattt-gagctgtacaatggaatgactggcctgctgggtttttgacttgcatggggtctgtaagtcc
i cerAty1.NW_012000030v1       C 0 I 607
s manLeu1.NW_012106397v1          194750 362 +   1331228 ttttccaagagacagaccctcacgggacacctttactagggcagtacagaaggaacatatagggttg-gaa-ccctcacacatggaggcatcattctgcaaaccccagattcatagacccacgaacagcttgcacccttggtgtggaaaagctacaggtactcaacactagcccagccgatgagggcagctgt-gggtaaagatgctgcaaagccgcaagtgcagagctgcccaaggtcttgggagcccagccatcacacccctgtgctctggatgtgggatttagatt-gaaaagagatgattt-gagctgtacaatggaatgactggcctgctgggtttttgacttgcatggggtctgtaagtcc
i manLeu1.NW_012106397v1       C 0 I 3945
s colAng1.NW_012121088v1           66852 361 +    168452 ttttccaaga---agagcctcataggaatcctttactagggcaatacagaaggaacatatagggttgttac-ccc-cacacagggaggcacaattctgcaaacaccggatccatagactcactaacagcttgcaccctcagtgtggaaaagctacaggtactcaacaccagcccagcccatgagggcaattgtgggggttagaccctgcaaagccacaggtgcagacctgccagagtacttgggagtacaggcctcacacccctgtgtgctggatgtggaatctggatt-cacaaaagatgatttgaagctcttgggttcaatgactggtttcctgagtttttgacttgcatgagatctgtaagtcc
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=910.000000
s hg38.chr14_GL000009v2_random     74274 1 +    201709 t
s panTro5.chr9                  41757347 1 + 116767853 t
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           43451 1 +     53730 t
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111162604 1 - 111193037 t
i macFas5.chr13                I 6238 C 0
s colAng1.NW_012121088v1           67213 1 +    168452 t
i colAng1.NW_012121088v1       C 0 I 7487
e rheMac8.chr15                   565316 171 - 111343173 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e manLeu1.NW_012106397v1          195112 3945 +   1331228 I
e cerAty1.NW_012000030v1         5663686 607 +   8072957 I
e macNem1.NW_012012133v1        26468061 171 +  28977278 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=881.000000
s hg38.chr14_GL000009v2_random     74275 3 +    201709 tgt
s panTro5.chr9                  41757348 3 + 116767853 tgt
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           43452 3 +     53730 tgg
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111162605 3 - 111193037 tgg
i macFas5.chr13                C 0 C 0
e rheMac8.chr15                   565316 171 - 111343173 I
e colAng1.NW_012121088v1           67214 7487 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e manLeu1.NW_012106397v1          195112 3945 +   1331228 I
e cerAty1.NW_012000030v1         5663686 607 +   8072957 I
e macNem1.NW_012012133v1        26468061 171 +  28977278 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=44135.000000
s hg38.chr14_GL000009v2_random     74278 43 +    201709 acatttcagtaaatgctggaatgagttaagtcattgggggaca
s panTro5.chr9                  41757351 43 + 116767853 acatttcagtaaatgctggaatgagttcagtcattggggggca
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           43455 41 +     53730 acattt-agtaaatgctggaatgagttaagtc-ttgggggaca
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   565487 43 - 111343173 acacttcagtaaatactggaatgagttaagactttggggcact
i rheMac8.chr15                I 171 C 0
s macFas5.chr13                111162608 43 - 111193037 acatgtcagtaaatgctggaatgagttaagactttaggggact
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26468232 43 +  28977278 acacttcagtaaatactggaatgagttaagactttgggggact
i macNem1.NW_012012133v1       I 171 C 0
e colAng1.NW_012121088v1           67214 7487 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e manLeu1.NW_012106397v1          195112 3945 +   1331228 I
e cerAty1.NW_012000030v1         5663686 607 +   8072957 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=12080.000000
s hg38.chr14_GL000009v2_random     74321 10 +    201709 gtagagaagt
s panTro5.chr9                  41757394 10 + 116767853 gtagagaagt
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           43496 10 +     53730 gtaaagaagt
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   565530 10 - 111343173 gtaacgaagg
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111162651 10 - 111193037 gtagagcagg
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26468275 10 +  28977278 gtaacgaagg
i macNem1.NW_012012133v1       C 0 C 0
s manLeu1.NW_012106397v1          199057 10 +   1331228 gtagggaagg
i manLeu1.NW_012106397v1       I 3945 C 0
e colAng1.NW_012121088v1           67214 7487 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e cerAty1.NW_012000030v1         5663686 607 +   8072957 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=627241.000000
s hg38.chr14_GL000009v2_random     74331 338 +    201709 catcagtgtattttgcagtgtgacaaggatacaagatttggggag-caagagccagaataatataatttgattctgtgtccctacccatgctcatgtggaattgtagtggggaatgttaaaggtgggaactggtgggaggtgatttaatcatggagAAGAGTGGGTGTTGGAGGTAGGGGTGTGGGGAGAATGGGAGAGATTATTttgtgggtg-ggagtgaaaggtgaaggtgggggg--cagattcttcacaaatgagtaaacac---------tatctccttaatgctgtccgcacgacagtgagtCCTCTTgatgattttggagctgtgagattgagtgaatactgt
s panTro5.chr9                  41757404 340 + 116767853 catcaatgtattttgcagtgtgacaaggatacaagatttggggag-caagagtcagaataatatgatttgattctgtgtccctaacaatactcatgtggaattgtagtggggaatgttaaaggtgggacctggtgggaggtgatttaatcatggagAACAGTGGGTGTTGGAGGTAGGGGTGTGGGGAGAATGGGAGAGATTATTttgtgggtg-ggagtgaaagatgagagtggggggggcagatccttcacaaatgggtaaacac---------tatctccttaattctgtccgcatgacagtgagttctcttgatgactttggagctctgagattgagtgaatactgt
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           43506 330 +     53730 catca-tgtattttgcagtgtg-caaggatacaagatttggggag-ccagagccagaataatatgatttgattctgtgt-cctaccaatatccatgtggaattgtaatagggaatgttaaaggtgggacctggtgggaggtga-ttaatcatggagAAGAGTGGGTGTTGGAGGTAGGGTTGTGGGGAG-ATGGGAGAGATTATTttgtgggtg-ggagtgaaagatgagggtggggg---cagattc-tcacaaatgggtaaacac---------t-tctccttaatgctgtccgcatgacagtgagttctcttgatgatttttgagctgtgagattgagtgaatactgt
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   565540 347 - 111343173 catcattgtattttgcagtgtgacaaggatatgagatttgggggaatgagggtcagaaCAatatgatttggctctgtgtccctactgatactcatgtggaattgtaatggggaatgtgaaagttgggacctggtggaaggt-atttaatcatggTGAAGCATGGGTGTTGGAGGTAAGGGTGTGGGGAGAATGGTGGAGATTATTttgggggtg-gggttgaaagatgaggatgggggg--cagatccttcacaaatgattaaacacttagtgctgtgttaccttagtgctgtccgcatgatagtgagttctcttgatgattatggagctttaagattgagtgaatactgt
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111162661 334 - 111193037 catcactgtattttgcagtgagacaaggatatgagatttgaggggacccgggtcagaataataggattcggccctgtgtctctaccaatactcttgtggaactgtaatggggaatgttaaag-aggggcctggtgggaggtgatataatcatggagAAGAGTGGGGGGTGGAGGTAGGGGCATGGAGAGAATGGGGGAGGTTATTTTGTGGGCG-----TGAAAGACAAGGatgggcgg--cggattcttcacaaatggttaaacgc---------tatctccttaatgctgtctgcatgatagtgagtTCTCTTGGTGATTATTGAACTTAAAGATTGAGTGCATAGTGT
i macFas5.chr13                C 0 I 239
s macNem1.NW_012012133v1        26468285 347 +  28977278 catcattgtattttgcagtgagacaaggatatgagatttgggggaatgagggtcagaaCAatatgatttggctctgtgtccctactgatactcatgtggaattgtaatggggaatgtgaaagttgggacctggtggaaggt-atttaatcatggTGAAGCATGGGTGTTGGAGGTAAGGGTGTGGGGAGAATGGTGGAGATTATTttgggggtg-gggttgaaagatgaggatggggga--cagatccttcacaaatgattaaacacttagtgctgtgttaccttagtgctgtccacatgagagtgagttctcttgatgattatggagctttaagattgagtgaatactgt
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5664293 346 +   8072957 catcattgtattttgcagtgtgacaaggatatgagatttgggggaatgagggtcagaaCAatatgatttggctctgtgtccctactgatactcatgtggaattgtaatggggaatgtgaaagttgggacctggtggaaggt-atttaatcatggTGAAGCATGGGTGTTGGAGGTAAGGGTGTGGGGAGAATGGTGGAGATTATTttgggggtg-gggttgaaagatgaggatgggggg--cagatccttcacaaatgattaaacacttagtgctgtgttaccttagtgctgtccgcatgatagtgagttctcttgatgattatggagctttaag-ttgagtgaatactgt
i cerAty1.NW_012000030v1       I 607 C 0
s manLeu1.NW_012106397v1          199067 337 +   1331228 catcgttgtattttgcaatgtgagaaggacatgagatttgggag--ccagagacagaataataaaatttagctctgtgtccctaccaaaactcatgtggaattgtaatggggaatgttaaaggtggggcctggaggagggtgatttaatcatggtggAGAGTGGGGGTTTGAAGGTGGGGAGTAGGGAGAATGA-GGGGATTAtggtgggggtgaggggtaaaaagtggtggtggggga--tggatccttcacaaatgattaaacac---------aacctccttgttgctgtgcttatgacagtgagtTCTCTTCatgattttggagctgtgagattaaatggatactgg
i manLeu1.NW_012106397v1       C 0 C 0
e colAng1.NW_012121088v1           67214 7487 +    168452 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=58357.000000
s hg38.chr14_GL000009v2_random     74669 23 +    201709 cctgctgggttttggacttgc-----------------at
s panTro5.chr9                  41757744 23 + 116767853 cctgctgggttttggacttgc-----------------at
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           43836 22 +     53730 cctgctgggtttt-gacttgc-----------------at
i gorGor5.CYUI01002030v1       C 0 I 6736
s rheMac8.chr15                   565887 23 - 111343173 cctgctgggttttggacttac-----------------at
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111163234 23 - 111193037 cctgctgggttttgcactcac-----------------at
i macFas5.chr13                I 239 C 0
s macNem1.NW_012012133v1        26468632 23 +  28977278 cctgctgggttttggacttac-----------------at
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5664639 23 +   8072957 cctgctgggttttggacttac-----------------at
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          199404 40 +   1331228 cctcctgggttttggacttgcattgggcctgtggtcctat
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           74701 23 +    168452 cctgctgggttttgcactcac-----------------at
i colAng1.NW_012121088v1       I 7487 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=749642.000000
s hg38.chr14_GL000009v2_random     74692 293 +    201709 ttgtgttatttttctgggcaacttcttccctttggattgagaaaccttacccaatgcctgt--------tctaccttgaaggaaaagaa-atcccttttaaattcagggactcattggcagaagggactgtaaccttgtctcagatgagattttgaaatttttacatt-----------cg--------gaatgagttaagacttttggaaacttttgaaaaggcatgattgtgttttgctctgtgagaaggacatgaggttctggggaatcagggtcagaataatatgggttggctgtgtgtcccta-taaaactcac----gtg
s panTro5.chr9                  41757767 291 + 116767853 ttgtgttatttttctggggaatttcttccatttggattgagaaaccttacccaatacctgc--------tgtaccttgaaggaaaagaa-atcccttttaaattcagggactcattggcagaagggagtgtaaccttgtctcagatgagactttgaaatttttacatt-----------tg--------gaatgagttaagacttttggaaactt--gaaaaggcatgattgtgttttgctctgtgagaaggacctgaggttctggggtatcagggtcagaataatatgggttggctgtgtgtcccta-taaaactcat----gtg
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           50594 304 +     53730 ttgtgttatttttctgggaaatttcttccctttggattgagaaagcttacccaatacctgtac--tca-tgtaccttgaaagaaacgaa-a-cccttttaacttcagggactcataggcagaagagactgt-accttgtctcagatgagactttgaactttttacatt-----------tgattaatgcgggtgagttaag-cttttggaaactt-tgaaaaggcacgattgtgttttg-tctgtgagaaggacatgaggatttgggg-gtcaaggtcagCAtaatatgagttggctgtgtgcccctg-gaaaactcactgtggaa
i gorGor5.CYUI01002030v1       I 6736 C 0
s rheMac8.chr15                   565910 300 - 111343173 ttgtgtgatttttctgggaaatttcttccctttggattgagagagcttacccaatgcctgtaccatcattgtaccttgaaagaaaagaa-at-cctttttaattcagggactcataggcagaagagactgtagccttgtctcagatgagactttgaactttttacatt-----------tg--------gaatgagttaagacttttggaaaattttgaaaaggcatgattgtattttactgtgtgagaaaaacgtgagattctggggtatcagggtcagaaTAACATGGTTTGGCTGTGTGTCCCTG-TGAAACTCAT----GTG
i rheMac8.chr15                C 0 I 3420
s macFas5.chr13                111163257 301 - 111193037 ttgtgttatttttctggggaatttcttccctttggattgtgaaaccttacccaatgcccgtcccatcatcgtaccttgaaagaaaagaa-atcccttttaaattcagggactcatagccagaagggactgtagccttgtctcagatgagacttggacatgtttacatt-----------tg--------gaatgagttaagacttttggaaactttagaaaaggtatgattgtgttttgctctgtgataatgacatgaggttctggggtatgagggtcagaaTTatatgggatggctgtgtgtcccta-tgacactaat----gtg
i macFas5.chr13                C 0 I 6
s macNem1.NW_012012133v1        26468655 300 +  28977278 ttgtgtgatttttctgggaaatttattccctttggattgagagagcttacccaatgcctgtaccatcattgtaccttgaaagaaaagaa-at-ccttttgaattcagggactcataggcagaagagactgtagccttgtctcagatgagactttgaactttttacatt-----------tg--------gaatgagttaagacttttggaaaattttgaaaaggcatgattgtattttactgtgtgagaaaaacgtgagattctggggtatcagggtcagaaTAACATGGTTTGGCTGTGTGTCCCTG-TGAAACTCAT----GTG
i macNem1.NW_012012133v1       C 0 I 3421
s cerAty1.NW_012000030v1         5664662 301 +   8072957 ttgtgtgatttttctgggaaatttcttccctttggattgagaaagcttacccaatgcctgtaccatcattgtatcttgaaagaaaagaa-atcccttttgaattcagggactcataggcagaagagactgtagccttgtctcagatgagactttgaactttttacatt-----------tg--------gaatgagttaagacttttggaaaattttgaaaaggcatgattctattttgctctgtgaaaaaaacatgagattctggggtatcagggtcagaaTAACATGGTTTGGCTGTGTGTCCCTG-TGAAACTCAT----GTG
i cerAty1.NW_012000030v1       C 0 I 3426
s manLeu1.NW_012106397v1          199444 305 +   1331228 ttgtgtttttttcctgggaaatttcttccctttggattgagaaaggttaccgaatgcctgtaccatcattacaccctgaaagaaaagaacat-ccttttaaattcagggactcataagcaaaaggaa-------cttgtctcagttgagatgttgaactttttgcatttgagttaatgctg--------gaatgagttaagacttttgg-aacttttgaaaaggcttgaatgtattttgctctgtgagaaggacatgagattctggggtatcagggtcagaataatatggtttgactgtgtttctttaccaaaactcat----gtg
i manLeu1.NW_012106397v1       C 0 I 5
s colAng1.NW_012121088v1           74724 301 +    168452 ttgtgttatttttctgaggaatttcttccctttggattgtgaaaccttacccaatgcctgtcccatcatcgtaccttgaaagaaaagaa-atcccttttaaattcagggactcattggtagaaaggcctgtagccttgtctcagatgagactttgatatttttacatc-----------ca--------gaatgagttaagacttttggaaacttttgaaaaggcatgattgtgttttgctctgtgagaaggacatgaggttctggggtatcagggtcagCATTatatgggttggctgtgtgtcccta-tgaaactaat----gtg
i colAng1.NW_012121088v1       C 0 I 6
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=623.000000
s hg38.chr14_GL000009v2_random     74985 2 +    201709 tc
s panTro5.chr9                  41758058 2 + 116767853 tc
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           50898 2 +     53730 tt
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111163564 2 - 111193037 ta
i macFas5.chr13                I 6 C 0
s manLeu1.NW_012106397v1          199754 2 +   1331228 ta
i manLeu1.NW_012106397v1       I 5 C 0
s colAng1.NW_012121088v1           75031 2 +    168452 ta
i colAng1.NW_012121088v1       I 6 C 0
e rheMac8.chr15                   566210 3420 - 111343173 I
e saiBol1.JH378105              64682074 15923 -  72162052 I
e cerAty1.NW_012000030v1         5664963 3426 +   8072957 I
e macNem1.NW_012012133v1        26468955 3421 +  28977278 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=1596044.000000
s hg38.chr14_GL000009v2_random     74987 597 +    201709  
s panTro5.chr9                  41758060 597 + 116767853  
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           50900 590 +     53730  
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   569630 610 - 111343173  
i rheMac8.chr15                I 3420 C 0
s macFas5.chr13                111163566 608 - 111193037  
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26472376 612 +  28977278  
i macNem1.NW_012012133v1       I 3421 C 0
s cerAty1.NW_012000030v1         5668389 612 +   8072957  
i cerAty1.NW_012000030v1       I 3426 C 0
s manLeu1.NW_012106397v1          199756 599 +   1331228  
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           75033 611 +    168452  
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64682074 15923 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=626817.000000
s hg38.chr14_GL000009v2_random     75584 207 +    201709 tggttaggaggggcctgatcagtgtgggcctgctcagggga-----------------------------cctagtcagttgggacttg-tcagtgaggcctatttagtggggg-gtggtcagCAGGGGTCTGCTTAGAGTGGGTCTCATTAGAGGGATCTAGTAGTGCATGCCTTGGTGAGTGGGTTGATAGTGGTAGACAAATGTTTGGTGTCTGGTCAGTGCCAACCTGGGCTGT
s panTro5.chr9                  41758657 205 + 116767853 tggtcaggaggggcctgatcagtgtgggcctgctcagtgga-----------------------------cctagtcagtcaggacttggtaagtgaggcctatttagtcgggg-gtggtcatcaggggtctgcttagAGAGGGTCTCATTAGAGGGACCTAGTAGTGCAGGTCTTG---AGTGGGTTCCTAGTGGCAGATAAATGTTTGGTgtctggtcaatgccaacctgggctgt
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           51490 207 +     53730 tggttaggaggggcctgatcagtgtgggcctgctcagtgga-----------------------------cctagtcagtt-ggacttggtcagtgaggcctatttagtagggg-gtggtcagCAGGTGTCTGCTTAGAGAGGGTCTCATTAGAGGGATCTAGTAGTGCAGGTCTTGGTGAGTGGGTTCCTAGTGGCAGACAAATGTTTGGTGTCTGGTCAATGCAAACCTGGGCTGT
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   570240 207 - 111343173 tggttagaaggcccctgatcagtgtgggcctggtcagtgg------------------------------actagtcagttgggacttggtcagtgaggcctatttattgggggcgtggtcagcaggggtctgcttagAGAGGGTCTCATTA-GGGGATCTAGTAATGGGGGTCTTGGTGAGTGGGGACCTAGTAGCAACCACTTGTTTGATGTCTGGTCAGTGTGAAACTAGGCTGC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111164174 205 - 111193037 tggttagaaggggcctgatcagtgtgggcctgctcagtggc-----------------------------gctagtcagttgggacttggtcagtgaggcgtacttagtgGGGGCGTGGTCAGCAGGGGTCTGCTTAGAGTGGGTCTCA----GGGGTTCTAGGAGTGGGGGTCTTGGTGAGTGGGGACCTACTGGCAGACAAATGTTTGGTGTCTGGTCAGTGCAAACCTGGGCTGC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26472988 208 +  28977278 tggttagaaggcccctgatcagtgtgggcctggtcagtgg------------------------------actagtcagttgggacttggtcagtgaggcctatttattgggggcgtggtcagcaggggtctgcttagAGAGGGTCTCATTAGGGGGATCTAGTAATGGGGGTCTTGGTGAGTGGGGACCTAGTAGCAACCACTTGTTTGATGTCTGGTCAGTGTGAAACTAGGCTGC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5669001 208 +   8072957 tggttagaaggcccctgatcagtgtgggcctggtcagtgg------------------------------actagtcagttgggacttggtcagtgaggcctatttattgggggtgtggtcagcaggggtctgcttagAGAGGGTCTCATTAGGGGGATCTAGTAGTGGGGGTCTTGGTGAGTGGGGACCTAGTAGCAACCACTTGTTTGGTGTCTGGTCAGTGTGAAACTAGGCAGG
i cerAty1.NW_012000030v1       C 0 I 34
s manLeu1.NW_012106397v1          200355 237 +   1331228 tggttagaaggcccctgatcagtgtgggcctggtcagtggcaccctgatcagtgtgggcctggtcagtggactagtcagttgggacttggtcagtgaggcctATTTATTGGGGGCGTGGTCAGCAGGGGTCTGCTTAGAGAGGGTCTCATTAGGGGGATCTAGTAAT-GGGGTCTTGGTGAGTAGGGACCTAGTGGCAGCCACTTGTTTGGTGTCTGCTCAGTGTAAAACTGGGCTGT
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           75644 204 +    168452 tggttataagg-gcctgatcagtgtgggcctgctcagtgga-----------------------------cctagtcagttgggacttggtcagtgaggtgtacttagt-gGGGCGTGGTCATCAGAGGTCTGCTTAGAGAGGGTCTCA---GGGGGATCTAGGAGTGGGGGTCTTGGTGAGTGGGGACCTACTGGCAGACAAATGTTTGGTGTCTGGTCAGTGCAAAGCTGGGCTGC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64697997 207 -  72162052 tggtcagaggg-gcctgatcggtatgggtctgctcactgga-----------------------------cctggtcagtggggactctgtcagtgaggcctatttagtgggggcctggtcaggaggGGTCTGCCTAGAGAGGGCCTCATCAGGGGAACCTAGTAGT-GGGGTGTTGGTGAGGGGAGACTTAGTGGCAGCTGGTTATTTGGTGTCTGGTCAGTACAAACCTGGGTTGC
i saiBol1.JH378105             I 15923 I 1
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=66139.000000
s hg38.chr14_GL000009v2_random     75791 22 +    201709 GGGACTTGGTCAGTGGAGACCT
s panTro5.chr9                  41758862 22 + 116767853 gggacttggtcagtggagacct
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           51697 22 +     53730 GGGACTTGGTCAGTGGAGACCT
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   570447 22 - 111343173 AGGACTTTGTCAGTGGAGACCT
i rheMac8.chr15                C 0 I 141
s macFas5.chr13                111164379 22 - 111193037 GGGGCTTGGTCAGTGGAGACCT
i macFas5.chr13                C 0 I 92
s macNem1.NW_012012133v1        26473196 22 +  28977278 AGGACTTTGTCAGTGGAGACCT
i macNem1.NW_012012133v1       C 0 I 141
s manLeu1.NW_012106397v1          200592 22 +   1331228 GGGACTTTGTCAGTGGAGACCT
i manLeu1.NW_012106397v1       C 0 I 65
s colAng1.NW_012121088v1           75848 22 +    168452 AGGGCTTGGTCATTGGAGACCT
i colAng1.NW_012121088v1       C 0 I 92
s saiBol1.JH378105              64698205 22 -  72162052 GGGGCTTGGTCAGTGGAGACCT
i saiBol1.JH378105             I 1 I 91
e cerAty1.NW_012000030v1         5669209 34 +   8072957 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=-9279.000000
s hg38.chr14_GL000009v2_random     75813  22 +    201709 TG------------------------------------------------------------------------------------------------------------------------------Ggacctagtcagcagagacg---------------------------
s panTro5.chr9                  41758884 114 + 116767853 tgtcagctagtacttagtggtggccttgtc----------------------------------agATTGGGCTGGGTTACTGGTGACCAGGTCAAGGGGTGCTATTCAGTGGAGGTCTGGTCACGTGGGACCTAGTCAGCAGaggct---------------------------
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           51719 115 +     53730 TGTTAGCTGGAGCTAGTTGTTGGCCTTGTCAGATTGGGCTGGGTTTACTGGTGACTAGGTCAAGG---------------------------------GGTGCTATTCAGTGGAGGCCTGGTCACATGGGACCTAGTCAGCAGAGATG---------------------------
i gorGor5.CYUI01002030v1       C 0 C 0
s macFas5.chr13                111164493  22 - 111193037 ------------------------------------------------------------------------------------------------------------------------------TGGGACTTAGACAGCAGaggct---------------------------
i macFas5.chr13                I 92 C 0
s cerAty1.NW_012000030v1         5669243  22 +   8072957 ------------------------------------------------------------------------------------------------------------------------------TGGGACCTAGTCAGCAGGGCCT---------------------------
i cerAty1.NW_012000030v1       I 34 I 27
s manLeu1.NW_012106397v1          200679  22 +   1331228 ------------------------------------------------------------------------------------------------------------------------------TGGGACCTAGTCAGCAGGACAT---------------------------
i manLeu1.NW_012106397v1       I 65 I 18
s colAng1.NW_012121088v1           75962  22 +    168452 ------------------------------------------------------------------------------------------------------------------------------TGGGACTTAGATAGCAGaggct---------------------------
i colAng1.NW_012121088v1       I 92 C 0
s saiBol1.JH378105              64698318  49 -  72162052 ------------------------------------------------------------------------------------------------------------------------------TGTgacctagtcagcaggacctggtgggcgtgtcctcatcagtgaggcc
i saiBol1.JH378105             I 91 C 0
e rheMac8.chr15                   570469 141 - 111343173 I
e macNem1.NW_012012133v1        26473218 141 +  28977278 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=702215.000000
s hg38.chr14_GL000009v2_random     75835 221 +    201709 cttgtcag-tggggccctggtcagggcaggct-ggtccttggaa-cttaatcagtgggggcctggtcagagaggacttgatcattgGTGGCTTTTGTAGCACT--GGT--CTACGGGGTGACCTGGTCAGCGGGGATCTGAGCAGTGCGTGCCTGTTCAGTGGGGCGTAGTCATTAGGGTCCCAG-TCAGG-AGC-ATCTTGTCACCTCAGTCCTGGTTAGCAGGGGCCTG
s panTro5.chr9                  41758998 222 + 116767853 cttgtcag-tggggccctggtcagggcaggct-ggtccgtggaaacctaatcagtggaggcctggtcagagacgacttgatcagtgGTGGCTTTTGTAGCACT--GGT--CTACGGGGTGACCTGGTCAGCGGGGATCTGAGCAGTGCATgcctgttcagtggggcatactcattagggtcctgg-tcagg-ggc-atctggtcacctcaggcctggttagcaggggcctg
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           51834 225 +     53730 cttatcagttggggccctggtgagggcaggctgggtcagtggaa-cctaatcagtgggggcctggtcagaaaggacttgatcagtgGTGGCTTTTGTAGCACT--GGT--CTACGGGGTGACCTGGTCAGCGGGGATCTGAGCAGTGCGTGCCTGTTCAGTGGGGCATACTCATTAGAGTCCCAGTTCAGG-GGCAATCTGGTCACCTCAGGCGTGGTTAGTAGGGGCCTG
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   570610 225 - 111343173 cttgtcag-tggggtactgctcacggcagcct-ggtcagtggaa-cctaatcagtgggggcctggtcagagagggcttggttagtgGTGGGTTTTGTAGCCACCGGGTGGCTATGGGCTGACCTGGTCAGTGGGGATCTGAGCAGTGGTTgcctattcagtggagcctactcactagggtcacag-tcagg-ggc-atctggtcacctaaggcctggttaataggggcctg
i rheMac8.chr15                I 141 C 0
s macFas5.chr13                111164515 221 - 111193037 cttgtcag-tgggtccctggtcagggcagcct-ggtcagtggaa-ccttatcagtcggggcctggtcagagaggtcttgatcagtgGTGACTTTTGTAGCCTC--GGT--CTATGGGGTGACCTGGTCAGCGGGGATCTGAGCAGTGCATGCCTGCTCAGCGGGGCCTACTCACTGGGTTCCTGG-TCAGA-GAC-ATCTGGTCACCTCAGGCCTGGTTAGTAGGGGCCTG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26473359 225 +  28977278 cttgtcag-tggggtactggtcacggcagcct-ggtcagtggaa-cctaatcagtgggggcctggtcagagagggcttggttagtgGTGGGTTTTGTAGCCACCGGGTGGCTATGGGCTGACCTGGTCAGTGGGGATCTGAGCAGTGGTTgcctattcagtggagcctactcactagggtcacag-tcagg-ggc-atctggtcacctaaggcctggttaataggggcctg
i macNem1.NW_012012133v1       I 141 C 0
s cerAty1.NW_012000030v1         5669292 225 +   8072957 cttgtcat-tggggtactggtcacggcagcct-ggtcagtggaa-cctaatcagtgggggcctggtcagagagggcttggtcagtgGTGGGTTTTGTAGCCACCGGGTGGCTATGGGCTGACCTGGTCAGTGGGGATCTGAGCAGTGGGTgcctattcagtggagcctactcactagggtcacag-tcagg-ggc-atctggtcacctaaggcctggttaataggggcctg
i cerAty1.NW_012000030v1       I 27 C 0
s manLeu1.NW_012106397v1          200719 220 +   1331228 cttgttag-tggggccctggtcagggcagcct-ggtcagtggaa-cctaatcagtggggacct-gTTAGAGCGTGCGTGGTCAGTGGTGGCTTTTGTAGCACT--GGT--TTATGGGGTGACCTGGTCAGCGGGGATCTGAGCAGTGGTTGCCTATTCAGTGGGTCCTACTCACTAGGGTCACGG-TCAGG-GGC-ATCTGGTCACCTCAGGCCTGGTTAGTAGGGGTCTG
i manLeu1.NW_012106397v1       I 18 C 0
s colAng1.NW_012121088v1           75984 221 +    168452 cttgtcag-tgggtccctggtcagggtagcct-ggtcagtggaa-cctaatcagtcggggcctggtcagagaggtcttgatcagtgGTGACTTTTGTAGCACT--GGT--CTATGGGGTGACCTGGTCAGTGGGGATCTGAGCAGTGTGTGCCTGTTCAGCGGGGCCTACTCACTGGGTTCCTGG-TCAGA-GAC-ATCTGGTCACCTCAGGCCTGGTTAGTAGGGGCCTG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64698367 220 -  72162052 cttgtcag-tggagacctggtcggggcagcct-ggtcagcagaa-cctaatcaatgggggcccggtcagAGGGGACTAGGTCAGTGGTGGCTTTTGTTGCGCT--AAt--tagtgg--tgacctagtcagtggggatctgagcagtgggtgcctgatcagtggggcctactcagcagggtccagg-tcagGCAGC-ACTTGGTCACCTCaggcctggtcagtggcagcctg
i saiBol1.JH378105             C 0 I 337
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=64599.000000
s hg38.chr14_GL000009v2_random     76056 24 +    201709 GTCACTGGCTGCCTATTCCCTGCA
s panTro5.chr9                  41759220 24 + 116767853 gtcactgGCAGCCTATTCCCTGCA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           52059 24 +     53730 GTCACTGGCAGCCTATTCCCTGGA
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   570835 24 - 111343173 gtcagtgGCAGCCTGTTCCCTGGA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111164736 24 - 111193037 GTAACTGGTAGCCTATTCCCTGGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26473584 24 +  28977278 gtcagtgGCAGCCTGTTCCCTGGA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5669517 24 +   8072957 gtcagtgGCATCCTGTTCCCTGGA
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          200939 24 +   1331228 GTCAGTGGCAGCCTGTTCCCTGGA
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           76205 24 +    168452 GTAACTGGCAGCCTATTCCTTGGA
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64698587 337 -  72162052 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=368632.000000
s hg38.chr14_GL000009v2_random     76080 146 +    201709 GGCCTGGCCAGTGGGGCTTCATCTGTGGGACCAGACAATGGGGTCATGATCGGTGGAAcctgatcagtgaggccttgtctgtaaggacc-tc--------------gtcagtgagg-ccttgccagtgaggccttg-ccagtgaggc------------------------------------------------------------------------cttgtcagtaaggtcc
s panTro5.chr9                  41759244 131 + 116767853 GGCCTGGTGAGTGGGGCTTC-TCTGTGGGAGCAGGCAATGGGGTCATGATCGGTGGAAcctgatcagtgaggccttgtcagcaaggacc-tg--------------gtcagtgagg-ccttgccagtgaggccttg---------------------------------------------------------------------------------------tcagtaaggtcc
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           52083 133 +     53730 GGCATGGTCAGTGGGGCTTCATCTGTGGGACCAGACAATGGGGTCATTATCGGCGGAAccttatcagtgaggccttgtcagtaaggaccttg--------------ggcagtgagg-ccttacaagtgaggccttg---------------------------------------------------------------------------------------tcagtaaggtcc
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   570859 148 - 111343173 GGTCTGGTCAGTGGGGCCTCATCTGTGGGGCCAGGCAATGGGGTCATGATCGGTGGAAcctgatcaatgaggccttgtcagtaagaacc-tg--------------gtcagtgagg-ccttgtcagtaaggaccttgtcagtgaggc-----------------------------------------------------------------------cctggtcagtaagatcc
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111164760 233 - 111193037 GGCCTGATCAGTGGACCTTCATCTATGGGGCCAGGCAAAGGGGTCAtgatctgtggaacctgatcagtgaggccttgtcagtaaggacc-tggtcagtgagcccttgtcagtgagg-cctggtcagtaaggtcttggtcagtgaggcctggtcagtaaggtcttggtcagtgaggcttggtcagtaaggtcctggtcagtgagcccttgtcattgaggcttggtcagtaaggtcc
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26473608 148 +  28977278 GGTCTGGTCAGTGGGGCCTCATCTGCGGGGCCAGGCAATGGGGTCATGATCGGTGGAAcctgatcaatgaggccttgtcagtaagaacc-tg--------------gtcagtgagg-ccttgtcagtaaggaccttgtcagtgaggc-----------------------------------------------------------------------cctggtcagtaagatcc
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5669541 148 +   8072957 GGTCTGGTCAGTGGGGCCTTATCTGCGGGGCCAGGCAATGGGGTCATGATCGGTGGAAcctgatcaatgaggccttgtcagtaagaacc-tg--------------gtcagtgagg-ccttgtcagtaaggaccttgtcaatgaggc-----------------------------------------------------------------------cctggtcagtaagatcc
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          200963 162 +   1331228 GGCCTGGTCAGTGGGGCCTCATCTGTGGGGCCAGGCAATGGGGCCATGATCGGTAGAAcctgattagtgaggtcttgtcagtaaggacc-tg--------------gtcagtgagg-ccttgtcagtaaggacttggtcagtaagaa---------------------------------------------------------cctggtcagtgaggcctcgtcagtaaggacc
i manLeu1.NW_012106397v1       C 0 I 85
s colAng1.NW_012121088v1           76229 147 +    168452 GTCCTGGTCAGTGGGCCTTCATCTGTGGGGCCAGGCAATAGGGTCATGATCGGTGGAAcctgatcagtgagcccttgtcagtaaggacc-tg--------------gtcagtgagg-actggtcagtaaggtcttggtcagtgaggt------------------------------------------------------------------------ctggtcagtaaggtct
i colAng1.NW_012121088v1       C 0 I 14
s saiBol1.JH378105              64698924 134 -  72162052 gacctggtcagtggggcctggttcataagacc-------gtggtca-----gttaggacctggtcagtgatgcctggttcataagaacc-tg--------------gtcagttaggacctggtcagtggtg-cctgctgagtggggt-----------------------------------------------------------------------tctggtcagtgggcc--
i saiBol1.JH378105             I 337 C 0
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=124631.000000
s hg38.chr14_GL000009v2_random     76226 57 +    201709 tcgtcagtgGAGTCCTGGTC--------------ATTGTGGGCCTGGCAGCGGGAATCTAGTTAGTGAGGC
s panTro5.chr9                  41759375 57 + 116767853 ttgtcagtggagtcctggtc--------------attgTGGGCCTGGCAGCGGGAATGTAGTTAGTGAGGC
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           52216 57 +     53730 tcatcagtggagtcctggtc--------------attgtgggcctgtcagcgggaatctagttagtgaggc
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   571007 57 - 111343173 tgGTATGTGGGGTcctggtc--------------attgtgggcctggcagcaggggcctggttagtggggc
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111164993 56 - 111193037 tggtgagtgagg-cctggtg--------------attatgggcctggcagcgGGAGATTGGTTTATGGGAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26473756 57 +  28977278 tgGTATGTGGGGTCCTGGTC--------------ATTGTGGGCCTGGCAGCAGGGGCCTGGTTAGTGGggc
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5669689 57 +   8072957 tgGTACGTGGGGTcctggtc--------------attgtgggcctggcagcaggggcctggttagtggggc
i cerAty1.NW_012000030v1       C 0 C 0
s colAng1.NW_012121088v1           76390 71 +    168452 tggtcggtaaggtcctggtcagtgaggcgtggtgattatgggcctggcagtGGGAGATTCGTTTGTGGGAG
i colAng1.NW_012121088v1       I 14 C 0
s saiBol1.JH378105              64699058 57 -  72162052 tgataagtagggtcctggtc--------------attgTGGGCCTGGCAGTGGGCACATAGTCAGTGGGGT
i saiBol1.JH378105             C 0 C 0
e manLeu1.NW_012106397v1          201125 85 +   1331228 I
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=515554.000000
s hg38.chr14_GL000009v2_random     76283 157 +    201709 ---------------CTGGTGAT-------------------------------------------GGGGCTCTAATCAGTGAGGGTGTGGTCAGGGAGGAAGTGATAT-GCTGGAACTGGTCACCAGGGACCTGGTCAGTGGGGGCTGCTGAGTACTGCTGGGAGATGTCAGGGGAAATGCATGTTATCGAGGAGCCTGTGGACAGCTGGGGTGG
s panTro5.chr9                  41759432 157 + 116767853 ---------------CTGGTGAA-------------------------------------------GGGGGTCTAATCAGTGAGGGTGTGGTCAGGGAGGATCTGATAT-GCTGAATCTGCTCAGCAGAGACCTGGTCAGTGGGGGCTGCTGAGCACTGCTGGGAGATGTCAGGGGAAATGCATGTTATCGAGGAGCCTGTGGACAGCTGGGGTGG
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           52273 158 +     53730 ---------------ctggtgat-------------------------------------------gggggtctaatcagtgagggtgtggtcagGGAGGATCTGATATGGCTGGATCTGGTCAGCAGGGACCTTTTCAGTGGGGGCTGCTGAGCACTGCAGGGAGATGTCAGGAGAAATGCATGTTATCGAGGGCCCTGTGGACAGCTGGGATGG
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   571064 157 - 111343173 ---------------ctggtcat-------------------------------------------ggggttctaatcagtgagggtgtggtcagGGAGGACCTGATGT-GCGAGATCTGGTCAGCAGGGACCTGGCCAATGGGGGCTGCTGAGCACTACTGGGAGATGTCAGGTGCAATGCACGTTATCGAAGGCCCTGTGGACAGCTGGGATGG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165049 157 - 111193037 ---------------CTGGTCAT-------------------------------------------GGGGGTCTATTCAGGGAGGGTGTGGTCAGGGAGGAGCTGATGT-GTGGGATCTGGTCAGCAGGGATCTGGTAAATGGGGGCTGCTGAGCACTGCTGGGACATGTCAGAGGAAATGCACATTATCAAAGGACCTGTGGACAGCTGGGATGG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26473813 157 +  28977278 ---------------ctggtcat-------------------------------------------ggggttctaatcagtgagggtgtggtcagggaggacctgatgt-gtgagatctggtcagcagggacctggccaatgGGGGCTGCTGAGCACTACTGGGAGATGTCAGGTGCAATGCACGTTATCGAAGGCCCTGTGGACAGCTGGGATGG
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5669746 157 +   8072957 ---------------ctggtcat-------------------------------------------ggggttctaatcagtgagggtgtggtcagGGAGGACCTGATGT-GCGAGATCTGGTCAGCAGGGACCTGGCCAATGGGGGCTGCTGAGCACTGCTGGGAGATGTCAGGTGCAATGCATGTTATCGAAGGCCCTGTGGACAGCTGGGATGG
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          201210 157 +   1331228 ---------------CTGGTCAT-------------------------------------------GGGATTCTAATCAGTGAGGATGTGGTCAGGGAGGACCTGATGT-GCAGGATCTGGTCAGCAGGGACCTGGTCAGCAGGGGCTACTGAGCACTGCTGGGAGATGTCAGGTGCAATGCACATTATCAAGGGCCCTGTGGACAGCTGGGATGG
i manLeu1.NW_012106397v1       I 85 C 0
s colAng1.NW_012121088v1           76461 157 +    168452 ---------------CTGGTCAT-------------------------------------------GGGGGTCTATTCAGTGAGGGTGTGGTCAGGGAGGAGCTGATGT-GTGGGATCTGGTCAGCAGGGACCTGGTAAATGGGGGCTGCTGAGCACTGCTGGGAGATGTCAGAGGAAATGCACATTATCCAGGGAACTGTGGACAGCTGGGATGG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699115 213 -  72162052 CTGGTTGGTGGAGGCCTGGTTATTGAGAGCGTGGCAGTGCGGACCTGGTTGGTGGGGCTTGGGGAGGGGGGTGTAATCAGTGAGGGCGTGGTCAGGGAGGACCTGATGT-GTGGAGTCTGGCCAGGAGGGACCCGGTCAGTGGGGGCTGCCCAGCACTGCTGGGAGA--GCAGGGGCAATGTGGGCTATCGAGGGCCCTGTGGACAGATGGGCTGG
i saiBol1.JH378105             C 0 C 0
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=337.000000
s hg38.chr14_GL000009v2_random     76440 1 +    201709 C
s panTro5.chr9                  41759589 1 + 116767853 C
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           52431 1 +     53730 C
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   571221 1 - 111343173 A
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165206 1 - 111193037 C
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26473970 1 +  28977278 A
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5669903 1 +   8072957 A
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          201367 1 +   1331228 C
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           76618 1 +    168452 C
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699328 1 -  72162052 C
i saiBol1.JH378105             C 0 C 0
s tarSyr2.KE948298v1               18270 1 +    187038 C
i tarSyr2.KE948298v1           N 0 I 149
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=199664.000000
s hg38.chr14_GL000009v2_random     76441 64 +    201709 CCAGTGGT-GTTCAATGGCCCAGTCAAAAGTGGACAAAGCAGGTGTTTGGATGGACCTGGGAGAT
s panTro5.chr9                  41759590 64 + 116767853 CCAGTGGT-GTTCAATGGCCCAGTCAAAAGTGGACAAAGCAGGTGTCTGGATGGACCTGGGAGAT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           52432 64 +     53730 CCAGTGGTGGTTCAATGGCCCAGTCAAAA-TGGACAAAGCAGGTGTTTGGATGGACCTGGGAGAT
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   571222 64 - 111343173 CCAGTAGT-GCCCAAAGACCCAGTAAAAAGTGGACAAAGCAGGTGTTTGGATGGACCTAGGAGCT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165207 63 - 111193037 CCAGTGGT-GTCCAACGGCCCAGTGAAAA-TGGAAAAAGCAGGTGTTTAGATGGACCTGGGAGAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26473971 64 +  28977278 CCAGTAGT-GCCCAAAGACCCAGTCAAAAGTGGACAAAGCAGGTGTTTGGATGGACCTAGGAGCT
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5669904 64 +   8072957 CCAGTAGT-GCCCAAAGGCCCAGTCAAAAGTGGACAAAGCAGGTGTTTGGATGGACCTAGGAGCT
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          201368 64 +   1331228 CCAGTGGT-GCCCATAGGCCCAGTCAAAAGTGGACAAAACAGGTGTTTGGATGGACCTGGGAGAT
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           76619 62 +    168452 CCAGTGAT-GTCCAGCGGCCCAGTCAAA--TGGAAAAAGCTGGTGTTTAGATGGACCAGGGAGAT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699329 63 -  72162052 CTAGTGGG-GCCCAGCAG-CCAGTTAAAAGTGCATAAGGCAGGTGTTTGGATGGACTTGGGAGAT
i saiBol1.JH378105             C 0 C 0
e nomLeu3.chr1a                 40859479 6623 + 122973662 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I
e tarSyr2.KE948298v1               18271 149 +    187038 I

a score=109283.000000
s hg38.chr14_GL000009v2_random     76505 25 +    201709 CTTGCTCAGAGATTCTGACAGGACA
s panTro5.chr9                  41759654 25 + 116767853 CTTGCTCAGAGATTCTGACAGGACA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           52496 25 +     53730 CTTGCACAGGGATTCTGACAGGACA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866102 25 + 122973662 cTTGCTCAGAGATTTTTACAGGACA
i nomLeu3.chr1a                I 6623 C 0
s rheMac8.chr15                   571286 25 - 111343173 CTTGCTCAGAGATTTTGACAGGGCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165270 25 - 111193037 CTTGCTCAGAGATTCTGACAGGACA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474035 25 +  28977278 CTTGCTCAGAGATTTTGACAGGGCA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5669968 25 +   8072957 CTTGCTCAGAGATTTTGACAGGGCA
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          201432 25 +   1331228 CCTGCTCAGAGATTTTGACAGGACA
i manLeu1.NW_012106397v1       C 0 I 317
s colAng1.NW_012121088v1           76681 25 +    168452 CTTGCTCAGAGATTCTGACAGGACA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699392 23 -  72162052 CTTGCGCA--GATTCTGACAGGACA
i saiBol1.JH378105             C 0 C 0
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I
e tarSyr2.KE948298v1               18271 149 +    187038 I

a score=25254.000000
s hg38.chr14_GL000009v2_random     76530 7 +    201709 AAGGTAA
s panTro5.chr9                  41759679 7 + 116767853 AAGGTAA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           52521 7 +     53730 AAGGTAA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866127 7 + 122973662 AACGCAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   571311 7 - 111343173 AAGGTAA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165295 7 - 111193037 AAGGTAG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474060 7 +  28977278 AAGGTAA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5669993 7 +   8072957 AAGGTAA
i cerAty1.NW_012000030v1       C 0 C 0
s colAng1.NW_012121088v1           76706 7 +    168452 AAGGTAA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699415 7 -  72162052 AAGGTAA
i saiBol1.JH378105             C 0 C 0
e manLeu1.NW_012106397v1          201457 317 +   1331228 I
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I
e tarSyr2.KE948298v1               18271 149 +    187038 I

a score=217062.000000
s hg38.chr14_GL000009v2_random     76537 54 +    201709 AGGAAGGGCCAGAGTGGTCGGAGAGATAGTCACAGTCTATGGTCTG-CACA----GGAT
s panTro5.chr9                  41759686 54 + 116767853 AGGAAGGGCCAGAGTGGCCGGAGAGATGGTCACAGTCTATGGTCTG-CACA----GGAT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           52528 55 +     53730 AGGAAGTACCAGAGTGGCCAGAGAGATGGTCACAGTCTATGGGCTGCCACA----GGAT
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866134 54 + 122973662 AGGAAGGGCCAGAGTGGCCGGTGAGATGGTCACAGTCTATGGGCTG-CACA----GGAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   571318 54 - 111343173 AGGAAGGGCCAGAGTGGCTGGTGAGATGGTCACAGTCTGTGGGCTG-CAAA----GGAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165302 46 - 111193037 AGG------------GGCCGGAGAGATGGTCGCAGTCTATGGGCTG-CACAGGATGGAT
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474067 54 +  28977278 AGGAAGGGCCAGAGTGGCTGGTGAGATGGTCACAGTCTGTGGGCTG-CAAA----GGAT
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5670000 54 +   8072957 AGGAAGGGCCAGAGTGGCTGGTGAGATGGTCACAGTCTGTGGGCTG-CACA----GGAT
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          201774 54 +   1331228 AGGAAGGGCCAGAGTGGCTGGTGAGACGGTCACAGTCTATGGGCTG-CACA----GGAT
i manLeu1.NW_012106397v1       I 317 C 0
s colAng1.NW_012121088v1           76713 58 +    168452 AGGAAGGGCCAGAGTGGCCGGAGAGATGGTCACAGTCTATGGGCTG-CACAAGATGGAT
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699422 54 -  72162052 AGGAGGGGCCAGAGTGGCCGGAGAGATGGCCAGAGTCTGTGGGCTG-CACA----GGAC
i saiBol1.JH378105             C 0 C 0
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I
e tarSyr2.KE948298v1               18271 149 +    187038 I

a score=14982.000000
s hg38.chr14_GL000009v2_random     76591 3 +    201709 GGA
s panTro5.chr9                  41759740 3 + 116767853 GGA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           52583 3 +     53730 GGA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866188 3 + 122973662 GGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   571372 3 - 111343173 GGA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165348 3 - 111193037 GGA
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474121 3 +  28977278 GGA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5670054 3 +   8072957 GGA
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          201828 3 +   1331228 GAA
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           76771 3 +    168452 GGA
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699476 3 -  72162052 AGA
i saiBol1.JH378105             C 0 C 0
s tarSyr2.KE948298v1               18420 3 +    187038 GGG
i tarSyr2.KE948298v1           I 149 I 383
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=391716.000000
s hg38.chr14_GL000009v2_random     76594 94 +    201709 GGAGGCCAGGGAACAGGCAGGGTGGGCAGCTTGGTTTCAGGGAGAGGCAGGTGCATGCTGGGAGGTCAGACCCTATGAGGGTTGTGGGGGCGTC
s panTro5.chr9                  41759743 94 + 116767853 GGCGGCCAGGGAACAGGCAGGGTGGGCAGCTGGGTTTCAGGGAGAGGCAGGTGCATACTGGGAGGTCAGACCCTGTGAGGGCTGTGAGGGCATC
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01002030v1           52586 94 +     53730 GGAGGCCAGGGAACAGGCAGGGTGGGCAGCTGAGTTTCAGGGAGAGACATGTGCATGCTGGGAGGTCAGACCCTGTGAGGGCTGTGGGGGCATC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866191 94 + 122973662 GGAAGCCAGGGAAAAGGCAGGGTGGGCAGCTGGGGTGCAGGGAGAGGCAGGTGCATGCTGGGAGGTCAGACCCTCTCAGTACTGTGGGGGCGTC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   571375 94 - 111343173 GGAAGCCAGGGAACAGGCAGGGTGGGCAGCTGGGGTGCAGGGAGACTTAGGTGCATGCTGGGAGGTCAGACCCTGTGAGGACTGTGAGGGCGTC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165351 91 - 111193037 GGAAGCCAGGGAACAGGCAGGGTGGGCAGCTGGGGTGCAGGGAGAGGCAGGTGCATGCTGGG-GGTCAGACCCTGTGAGGACTGTGGGG--GTC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474124 94 +  28977278 GGAAGCCAGGGAACAGGCAGGGTGGGCAGCTGGGGTGCAGGGAGACTTAGGTGCATGCTGGGAGGTCAGACCCTGTGAGGACTGTGAGGGCGTC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5670057 94 +   8072957 GGAAGCCAGGGAACAGGGAGGGTGGGCAGCTGGGGTGCAGGGAGACTTAGGTGCATGCTGGGAGGTCAGACCCTGTAAGGACTGTGAGGGCGTC
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          201831 93 +   1331228 GGAAGCCAGGGAACAGGCAGGGTGGGCACCTGGGGTGCAGGGAGAGGCAGGTGCATGCTGGG-GGTCAGACCCTGTGAGGACTGTGGGGGTGTC
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           76774 91 +    168452 GGAAGCCAGGGAACAGGCAGGGTGGGCAGCTGGGGTG-AACGAGAGGCAGGCGCATGCTGGG-GGTCAGACCCTGTGAGGACTGTGGGGG-GTC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699479 94 -  72162052 GGAAGCCAGGGAACAGGCAGGGTGGGCAGCTGGGGTACAGGGAGAGGCAGGTGCATGCTGGGAGGCTGGGCACTGTGAGGACTCTGGGAGCATC
i saiBol1.JH378105             C 0 C 0
e panPan2.chr13                 96107630 4746 - 114479721 I
e rhiRox1.KN297240v1               37224 18462 +     85661 I
e tarSyr2.KE948298v1               18423 383 +    187038 I

a score=1423388.000000
s hg38.chr14_GL000009v2_random     76688 289 +    201709 AGGTGG--TGTGGGCTCCAGGTGCACCCTCAGCGCACTGGGCAGGTCTTGGCCCAGGCTCCCTGGACCTTGGTCGGGTGATGTGGTCACTTGCTGGGAGACTGTTGTCAGGTGCTGGACACCCACTCTGGG-TAGCAC-TGTCCCATCTCAGGACTGGACTTCCTCAGATACTGCAGAGGG-CACAGCCTCCAGCACAGGAGGGGAAGCCCCTTGGTGCAGCCTGAGCTCTCCATGGGCCTGGAGCATCCCCTGCCAG-CCCTGCACTCCCTCTTCTCCCA-GGTCCCACTTTTCC
s panTro5.chr9                  41759837 289 + 116767853 AGGTGG--GGTGGGCTCCAGGTGCACCCTCAGTGCACTGGGCAGGTCTTGCCCCAGGCTCCCTGGACCTTGGCCGGGTGATGTGGTCACTTACTGGGGGACTGTTGTCAGGCGCTGGCCACCCACCATAGG-TAGCAC-TGTCCCATCTCAGGACTGGACTTCCCCAGATCCTGCAGAGGG-CACAGCCTCCAGCCCAGGAGAGGCAGCCCCTTGGTGCAGCCTGAGCTCTCCATGGGCCTGGAGCATCACCTGCCAG-CCCTGCACTCCCTATTCTCCCA-GATCCTGCTTTTCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96112376 289 - 114479721 AGGTGG--GGTGGGCTCCAGGTGCACCCTCAGTGCACTGGGCAGGTCTTGGCCCAGGCTCTCTGGACCCCGGCCGGGTGATGTGGTCACTTACTGGGGGACTGTTGTCAGGCGCTGGCCACCCACCCTGGG-TAGCAC-TGTCCCATCTCACGACTGGACTTCCTCGGATCCTGCAGAGGG-CACAGCCTCCAGCCCAGGAGAGGCAGCCCCTTGGTGGAGCCTGAGCTCTCCATGGGCCTGGAGCATCACCTGCCAG-CCCTGCACTCTCTCTTCTCCCA-GGTCCTGCTTTTCC
i panPan2.chr13                I 4746 C 0
s gorGor5.CYUI01002030v1           52680 296 +     53730 AGGTGGACTGTGGGCTCCAGGTGCACCCTCAGTGCACTGGGCAGGTCTTGGCCCAGGCTCCCTGGACCCTGGCTGGGTGATGTGGTCATTTGCTGGCAGACTATTGTCAGGCTCTGGCTACCCAACCTGGGCTAGCGCTTGTCCCATCTCAGGACTGCACTTCCTCAGATCCTGCAGAGGGCCACAGCCTCCAGCCCAGGAGGGGCAGCCCCATGGTGCAGCCTGAGCTCTCCATGGGCCTGGACAATCCCCTGCCAGCCCCTGCACTCCCTCTTCTCCCAGGGTCCCGCTTTTCC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866285 289 + 122973662 AGGTGG--GGTGGGCTCCAGGTACACCCTCAGTGCACTGGGCAGGTCTCGGCCCAGGCTCCCTGGATCCTGGCCGAGTGATGTGGTCACTCCCTGGGGGACTGCTGTCGGGCCCCGGCCATCCACCCTGGG-CAGTGC-TGTCCCATCTCAGGACTGGACTTTCTCAGATCCTGCAGAGGG-CACAGCCTCCAGTGCAGGAGGGGCAGCCCCATGGTGCAACCTGAGCTCTCCATGGGCCTGGAGCATCCCCTGCCAG-CCCTGCGCTCCTTCCTCTCCCA-GGTCCCGCTTTTCC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   571469 288 - 111343173 AGGTGG--GGTGGGCTCCAGGTGCACCCTCAGTGCACTGGGAAGGTCTTGGCTCAGGCTCCCTGGACCCCGGTCGAGTGATGTGGTCACTCCCTGGGGGACTGCTGTCAGGCACTGGCCACCCACCCTGGG-CAGCAC-TGTCCCATCTCAGGACTGGACTTTCTCAGATCCTGCAGAGGG-CACAGCCTCCAGCCCAGGAGGAGCAGCCTGATGGTGCAGCCCGAGCTCTCCATGGGCCTGGAGCA-TCCCTGCCAG-CCCTGCGCTCCCTCTTCTTCCA-GGTCCTGCTTTTCC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165442 289 - 111193037 AGGTGG--GGTGGGCTCCAGATGCACCCTCAGTGCACTGGGCAGGTCTCAGGACAGGCTTCCTGGACCCCACCCGGGTGATGTGGTCACTCCCTGGGGGACTGTTGTCAGGCCCTGGTCACCCATCCTGGG-CAGAAC-AATCCCATCTCCAGACTGGACTTTCTCAAATCCTGCAGAGGG-TACAGCATCCAGCCCAAGAGCGGCAGCCCCATGGTGCAGCCTGAGCTCTCCTTGGGCCTGAAGCAGCCCCTGCCAG-CCCTGCGCTCCCTGGTCTCCCA-GTTCCCGCTTTTCC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474218 288 +  28977278 AGGTGG--GGTGGGCTCCAGGTGCACCCTCAGTGCACTGGGAAGGTCTTGGCCCAGACTCCCTGGACCCCGGTCGAGTGATGTGGTCACTCCATGGGGAACTGCTGTCAGGCACTGGCCACCCACCCTGGG-CAGCAC-TGTCCCATCTCAGGACTGGACTTTCTCAGATCCTGCAGAGGG-CACAGCCTCCAGCCCAGGAGGAGCAGCCCGATGGTGCAGCCCGAGCTCTCCATGGGCCTGGAGCA-TCCCTGCCAG-CCCTGCGCTCCCTCTTCTTCCA-GGTCCCGCTTTTCC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5670151 289 +   8072957 AGGTGG--GGTGGGCTCCAGGTGCACCCTCAGTGCACTGGGCAGGTCTTGGCCCAGGCTCCCTGGACCCCGGTCGAGTGATGTGGTCACTCCCTGGGGGACTGCTGTCAGGCACTGGCCACCCACCCTGGG-CAGCAC-TGTCCCATCTCAGGTCTGGACTTTCTCAGATCCTACAGAGGG-CACAGCCTCCAGCCCAGGAGGAGCAGCCCGATGGTGCAGCCCAAGCTCTCCATGGGCCTGGAGCATCCCCTGCCAG-TCCTGCGCTCCCTCTTCTTCCA-GGTCCCGCTTTTCC
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          201924 278 +   1331228 AGGTGG--GGTGGGCTCCAGGTGAACC-----------GGGCAGGTCTCAGCCCAGGCTCCCTGGACCCCAGCCAGGTGATGTGGTCACTCCCTGGGGGACTGCTGTCGGGCCCCAGCCACCCACCATGGG-CAGCAC-TGTCCTATCTCAGGTCTGGACTTTCTCAGATCCTGCAGAGGG-CACAGCCTCCAGCCCAGGAGGGTCAGCCCCATGGTGCAACCCAAGCTCTCCATGGGCCTGGAGCATCCCCTGGCAT-TCCTGCGCTCCCTCTTCTCCCA-GGTCCAGCTTTTCC
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           76865 289 +    168452 AGGTGG--GGTGGGCTCCAGGTGCACCCTCAGTGCACTGGGCAGGTCTCGGGGCAGGCTCCCTGTATCCCACTTGGGTGATGTGGTCACTCCCTGGGGGACTGCTGTGAGGCCCTGGCCACCCACCGTGGG-CAGCAC-TGTCCCATCTCAGGCATGGACTTTCTCAGTTCCTGCTGAGGG-TAGAGCATCCAGCCCAAGAGCAGCAGCCTCATGGTGCAGCCTGAGCACTCCTTGGGCCTGAAGCAGCCCCTGCCAG-CCCTGCGCTCCCTTGCCTCCCA-GGTCCCGCTTTTCC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699573 284 -  72162052 AGATGA--AATGGGCTCTAGGTGCACCCTCAGTGCACTGGGCAGGTCTCAGGCCAGGCTCCCTGGACTCCAGCATGGTTATAT----ACTCCCTGGGGGACTGCTGTCAGGCCTCAGCCACCCACCCTGGG-CAGCAC-CGTCCCATCTCAGGACTGGACTTTCTCAGATTCTGCAGAGAG-CACAGCCTCCAGCCCAGGAGACACAGCCCCGGTGTGCAGCGTGAGCTCTCCATGGGCCTGGAGCA-TCCCTGCCAG-CCCTGCGCTCCCTCTTCTCCCA-GGTCTTGCTTTTTC
i saiBol1.JH378105             C 0 C 0
e rhiRox1.KN297240v1               37224 18462 +     85661 I
e tarSyr2.KE948298v1               18423 383 +    187038 I

a score=8178.000000
s hg38.chr14_GL000009v2_random     76977 2 +    201709 -AG
s panTro5.chr9                  41760126 2 + 116767853 -AG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96112665 2 - 114479721 -AG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           52976 2 +     53730 -AG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866574 2 + 122973662 -AG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   571757 2 - 111343173 -AG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165731 2 - 111193037 -AG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474506 2 +  28977278 -AG
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5670440 2 +   8072957 -AG
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          202202 2 +   1331228 -AG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           77154 2 +    168452 -AG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699857 2 -  72162052 -AG
i saiBol1.JH378105             C 0 C 0
s tarSyr2.KE948298v1               18806 2 +    187038 TA-
i tarSyr2.KE948298v1           I 383 I 26
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=94022.000000
s hg38.chr14_GL000009v2_random     76979 25 +    201709 GGTC-AGCCAGTGGGGAGGCCCCGTC
s panTro5.chr9                  41760128 25 + 116767853 GGTC-AACCAGTGGCGAGGCCCCATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96112667 25 - 114479721 GGTC-AGCCAGTGGGGAGGCCCCATC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           52978 26 +     53730 GGTCAAGCCAGTGGGGAGGCCCCATC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866576 25 + 122973662 TGTC-AGCCAGCAGAGGGGCTCCGTC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   571759 25 - 111343173 TGTC-AGCCAGCAGGGAGGCTCCATC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165733 25 - 111193037 TGTC-AGCCGGCAGGGAGGACATGCC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474508 25 +  28977278 TGTC-AGCCAGCAGGGAGGCTCCATC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5670442 25 +   8072957 TGTC-AGCCAGCAGGGAGGCTCCATC
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          202204 25 +   1331228 TGTC-AGCCAGCAGGGAGGCTCCGTC
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           77156 25 +    168452 TGTC-AGCCGGCAGGGAGGACATGCC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699859 21 -  72162052 TGTC-AGC----AAAGAGGCCCCATT
i saiBol1.JH378105             C 0 C 0
e rhiRox1.KN297240v1               37224 18462 +     85661 I
e tarSyr2.KE948298v1               18808 26 +    187038 I

a score=7800.000000
s hg38.chr14_GL000009v2_random     77004 1 +    201709 C
s panTro5.chr9                  41760153 1 + 116767853 C
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96112692 1 - 114479721 C
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           53004 1 +     53730 C
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866601 1 + 122973662 C
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   571784 1 - 111343173 C
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165758 1 - 111193037 C
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474533 1 +  28977278 C
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5670467 1 +   8072957 C
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          202229 1 +   1331228 C
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           77181 1 +    168452 C
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699880 1 -  72162052 C
i saiBol1.JH378105             C 0 C 0
s tarSyr2.KE948298v1               18834 1 +    187038 C
i tarSyr2.KE948298v1           I 26 I 151
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=733973.000000
s hg38.chr14_GL000009v2_random     77005 146 +    201709 TCACTTCCCTATGT-GTATCCTGGGCTGAAACTTGCAGTGCACTGGGACAGGCATGAGGCTTCCCTAAGGCCCATTTA-GGGAGAGGACTGGCTCCCAGCCTGGCACAGGTCCTCAGCTCTGCCTTGGTTGCCTTAGAATGAGATGTA
s panTro5.chr9                  41760154 146 + 116767853 TCCCTTCCCTATGT-GTCTCCTGGGCAGAAACTTGCAGTGCACTGGGACAGGGATGAGGCTTCCTTAAGGCCCATTTA-GGGAGAGGACTGGCTCCCAGCCTGGCACAGGTCCTCAGCTCTGCCTTGATTGCCTTAGAATGAGATGGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96112693 146 - 114479721 TCCCTTCCCTATGT-GTCTCCTGGGCTGAAACTTGCAGTGCACTGGGACAGGGATGAGGCTTCCCTAAGGCCCATTTA-GGGAGAAGACTGGCTCCCAGCCTGGCACAGGTCCTCAGCTCTGCCTTGGTTGCCTTAGAATGAGATGGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           53005 145 +     53730 TCCCTTCCCTATGT-GTCTCCTGGGCTGAAACTTGCAGTGCACT-GGACAGGGATGAGGCTTCCCTAAGGCCTATTTA-GGGAGGGACTGGGCTTCCAGCCTGGCACAGGTCCTCAGCTCTGCCTTGGTTGCCTTAGAGTGAGATGGA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866602 146 + 122973662 TCCCTTCCCTATGT-GTCTCCTGGGCTGAAACTTGCGGAGGGTTGGGACAGGGATGGTGCTTGCCTCAGGCCCATTTA-GGGAGGGGACTGGCTCCCAGCTTGGCACATGTCCTCATCTCTGCCTTGGTTGCCTTAGAGTGAGAAGGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   571785 146 - 111343173 TCCCTTCCCTATGT-GTCTCCTGGGCTGAAACTTGCGGAGGATTGGGACAGGGATGGTGCATCCCTCAGGCCCATTTA-GGGAGGGGACTTGCTCCCAGCCTGGCACAGGTCCTCAGCTCTGCCTTGGTTGCCTTAGAGTGAGATGGA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165759 146 - 111193037 TCCCTTCCCTATGT-GTCTCCTGGGCTGAAATTTGTGGCGCATTGGGACAGGGATGGTACTTCCCTCAGGCCCATTTA-GGGAGGGGCCTGGCTCCCAGCCTGGCACAGGTCCTCAGCTCTGCCTTGGTTGCCTTAGAATGAGATGGG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474534 146 +  28977278 TCCCTTACCTTTGT-GTCTCCTGGGCTGAAACTTGCGGAGGATTGGGACAGGGATGGTGCATCCCTCAGGCCCATTTA-GGGAGGGGACTTGCTCCCAGCCTGGCACAGATCCTCAGCTCTGCCTTGGTTGCCTTAGAGTGAGATGGA
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5670468 146 +   8072957 TCCCTTCCCTATGT-GTCTCCTGGGCTGAAACTTGCGGAGGATTGGGACAGGGATGGTGCATCCCTCAGGCCCATTTA-GGGAGGGGCCTGGCTCCCAGCCTGGCACAGGTCCTCAGCTCTGCCTTGGTTGCCTTAGAGTGAGATGGA
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          202230 147 +   1331228 TCCCTTACCTGTGT-ATCTCCTGGGCTGAAACTTGTGGAGGATTAAGACAGGAATGGTGCTTCCCTCAGGCCCATTTATGGTGGGGGACTGGCTCCTAGCCTGGCACAGGTCCTCAGCTCTGCTTTGGTTGCCTTAGAGTGAGATGGG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           77182 146 +    168452 TCCCTTCCCTATGT-GTCTCCTGGGCTGAAAATTGTGGAGCACTGGGAAAGGGGTGGTACTTCCCTCAGGCCCATTTA-GGGAGGGGCCTGGCTCCCAGCCTGGCACAGGTCCTCAGCTCTGCCTTGGTTGCCTTAGAATGAGATGGG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64699881 146 -  72162052 TCCCTTCCCTAGGTGGTCTCCTGGGCTTAGACTTGGGGTGGATGGGGACAGGGGTGGTG-TTCCCCGTGACCCATTTA-GGGAGGGGACTGGCTCCCAGCCTGTCACACGTCCTCAGCTCTGCCTTGGTTTCTTTATAGTGACATGGA
i saiBol1.JH378105             C 0 C 0
e rhiRox1.KN297240v1               37224 18462 +     85661 I
e tarSyr2.KE948298v1               18835 151 +    187038 I

a score=10873.000000
s hg38.chr14_GL000009v2_random     77151  4 +    201709 -CC------AG
s panTro5.chr9                  41760300  4 + 116767853 -TC------AG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96112839  4 - 114479721 -TC------AG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           53150  4 +     53730 -TC------AG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866748  4 + 122973662 -TC------AG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   571931  4 - 111343173 -TC------AG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165905  4 - 111193037 -TC------AG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474680  4 +  28977278 -TC------AG
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5670614  4 +   8072957 -TC------AG
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          202377  4 +   1331228 -TC------AG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           77328  4 +    168452 -TC------AG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64700027 10 -  72162052 -TCTGCCCTTG
i saiBol1.JH378105             C 0 C 0
s tarSyr2.KE948298v1               18986  4 +    187038 CCC------A-
i tarSyr2.KE948298v1           I 151 N 0
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=345746.000000
s hg38.chr14_GL000009v2_random     77155 68 +    201709 TCAGTGCCCTGAAGGTAAAGGTAGGAGACTGT-CCCTGCTGT-TGGGAGGCTGGTCTAGGGATGGAGGAC
s panTro5.chr9                  41760304 68 + 116767853 TCAGTGCCCTGAAGGTAAAGGTAGGAGACTGT-CCCTGCTGT-TGGGAGGCTGGTCTAGGGATGGAGGAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96112843 68 - 114479721 TCAGTGCCCTGAAGGTAAAGGTAGGAGACTGT-CCCTGCTTT-TGGGAGGCTGGTCTAGGGATGGAGGAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           53154 68 +     53730 TCAGTGCCCTG-AGGTAAAGGTAGGAGACTGTCCCCTGCTGT-TGGGAGGCTGGTCTAGGGATGGAGGAC
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866752 69 + 122973662 TCAGTGCCCTGAAGGTAAATGTAGGAGACTGT-CCATGCTGTGTGGGAGGCTGGTCTAGGGATGGAGAAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   571935 69 - 111343173 TCAGTGCCCTGAAGGTAAAGGTAGGAGACTGT-CCCTGCTGTGTGGAAGGCTGGTCTAGGGATGGAGGAC
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165909 69 - 111193037 TCCGCATCCTGAGGGTAAAGGTAAGAGGCTGT-CCTTGCTGTGTGCTAGGCTGGTCTAGGGATGGAGGAC
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474684 69 +  28977278 TCAGTACCCTGAAGGTAAAGGTAGGAGACTGT-CCCTGCTGTATGGAAGGCTGGTCTAGGGATGGAGGAC
i macNem1.NW_012012133v1       C 0 C 0
s cerAty1.NW_012000030v1         5670618 69 +   8072957 TCAGTGCCCTGAAGGTAAAGGTAGGAGACTGT-CCCTGCTGTGTGGAAGGCTGGTCTAGGGATGGAGGAC
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          202381 69 +   1331228 TCAGTGCCCTGAAGGTAAAGGTAACAGACTGT-CCATGCTGTGTGGAAGGCTGGTCTAGGGATGGAGGAC
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           77332 69 +    168452 TCCGCTCCCTGAAGGTAAAGGTAAGAGGCTGT-CCCCGCTGTGTGCTACGCTGGTCTAGGGATAAAGGAC
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64700037 69 -  72162052 TCAGTGGCCTGGTGATGAAGGTAAGGGACTGT-CCCTGCTGTGTGGGAGGCTGGTCTAGGGATGGAGGAC
i saiBol1.JH378105             C 0 C 0
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=411151.000000
s hg38.chr14_GL000009v2_random     77223 94 +    201709 TTCACAGGTCCTCCCAGTCTGTCAGGCCTGGGCAGCACTGTCCTGTTTTAGGACTCAGAAAGTCCAGTTCTGGGATGGGACGGTGCTGCCCAGG
s panTro5.chr9                  41760372 94 + 116767853 TTAACAGGTCCTCCCAGTCTGTCAGGCCTGGGCAGCACTGTCCTGTCTCAGGACTCAGAAAGTCCAGTCCTGGGATGGGACGGTGCTGCCCAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96112911 94 - 114479721 TTAACAGGTCCTCCCAGTCTGTCAGGTCTGGGCAGCACTGTCCTGTCTTAGGATTCAGAAAGTCCAGTCCTGGGATGGGACGGTGCTGCCAAGG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           53222 93 +     53730 TTAAGAGGTCTTCCCAGTCTGTCAGGCCTGGGCAGTGTTGTCCTGTCTGAGGACTCAGAAAATCCAGTCCTGGGAT-GGACAATGCTGCCCAGG
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866821 94 + 122973662 TTAACAGGTCCTCCCAGTCTGTCAGGCCTAGGAAGCACTGTCCTGTCTCAGGACTCAGAAAGTCCAGTCCTGCAATGGGACGGTGCTGCCAAGG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr15                   572004 94 - 111343173 TTAACAGGTCCTCCCAGTCTGTCAGGCCTGGGCAGCCCTGTCCTGTCTCAGGACTCAGAAAGTCCAGTCCTGAGATGGGACGGTGCTGCCCAGG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111165978 94 - 111193037 TTAACAGGTCCTCCCAGTGTGTCAGGCCTGGGCAGCACTCTCCTGTCTCAGGACTCAGAAAGTCCAGTCTGGAGATGGGATTGTTCTGCCCAGG
i macFas5.chr13                C 0 C 0
s macNem1.NW_012012133v1        26474753 94 +  28977278 TTAACAGGTCCTCCCAGTCTGTCAGGCCTGGGCAGCCCTGTCCTGTCTTAGGACTCAGAAAGTCCAGTCCTGAGATGGGACGGTGCTGCCCAGG
i macNem1.NW_012012133v1       C 0 N 0
s cerAty1.NW_012000030v1         5670687 94 +   8072957 TTAACAGGTCCTCCCAGTCTGTCAGGCCTGGGCAGCCCTGTCCTGTCTTAGGACTCAGAAAGTCCAGTCCTGAGATGGGACAGTGCTGCCCAGG
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          202450 94 +   1331228 TTAACAGGTCCTCCCAGTCTGTCAGGCCTGGGCAGCACTCTCCTGTCTCAGGACTCAGAAAGTTTAGTCCTGAGTTGGGACAGTGCTGCCCAGG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           77401 93 +    168452 CTAACAGGCTCTCCCAGTGTGTCAGGCCTGGGCAGCACTCTCCTGTCTCAGGACTCAGAAAGTCCAGTCTGGAGAT-GGATTGTTCTGCCCAGG
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64700106  0 -  72162052 C
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=558905.000000
s hg38.chr14_GL000009v2_random     77317 162 +    201709 GAGGGTGGCCA-GGGTCTGACAGCAGTCCCCCAGGGAGTGACCACATCACCCAGCCGGGGTCCAGGgagcctggcctgagacctgccctgtgcact-gagggtgcacctggag-ccCACTCCACCTGATGCCCC--CACAGCCCTCACAGGTCCTGACCTCCCAGCA
s panTro5.chr9                  41760466 162 + 116767853 GTGGGTGGCCT-GTGTCTGACAGCAGTCCCCCAGGGAGTGACCACATCACCCAGCCGGGGTCCAGGGAGCCTGGCCTGAGACCTGCCCAGTGCACT-GAGGGTGCACCTGGAG-CCCACTCCACCTGATGAGCC--CACAGCCCTCACAGGTCCTGACCTCCCAGCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96113005 161 - 114479721 G-GGGTGGCCA-GGGTCTGACAGCAGTCCCCCAGGGAGTGACCACATCACCCAGCCGGGGTCCAGGAAGCCTGGCCTGAGACCTGCCCAGTGCACT-GAGGGTGCACCTGGAG-CCCACTCCACCTGATGAGCC--CACAGCCCTCACAGGTCCTGACCTCCCAGAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           53315 164 +     53730 GTGGGTGGCCAGGGGTCTGACAGTAGTCCGCCCAGGGGTGACCACATCACCCAGCTGGGGTCCAGGAAGCCTGGCCTGAGACCTGCCCATTGCACTGGAGGGTGCACCTGGAGCCCCACTCCATCTGATGCCCC--CACAGCCCTCACAGGGCCTGACCT-CCAGCA
i gorGor5.CYUI01002030v1       C 0 C 0
s nomLeu3.chr1a                 40866915 162 + 122973662 TTGGGTGGCGG-GGGCCTGACAGCAGTCCCCCAGGGAGTGACCACATCACCCAGGCGGGGTCCAGGGAGCCTGGCCTGAGACCTGCCCAGTGCATT-GAGGGTACACCTGGAG-CCCACTCCACCTGATACCCC--CACAGCCCTTGCAGGGTCTGACCTCCCAGCA
i nomLeu3.chr1a                C 0 N 0
s rheMac8.chr15                   572098 162 - 111343173 GTGGGTGGCCA-GGGCCTAACAGCAGTCCTCCAGGGAGTGACCACATCACCCAGCTGGGGTCCAGGGATCCTGGCCTGAGACCTGCCCAGTGCATT-GAGGGTACACCTGGAG-CCCACTCCACCTGATGCCCC--CGTAACCCTCACAGGGTCTGACCTCCCAGCA
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111166072 164 - 111193037 ATGGGTGACCA-GGGCCTGTCAACAGTCCCCCAGGGAGTGACCACATCACCCGGGTGGGGTCCAGGAAGCCTGTCCTGAGACCTGCCCAGTGCACT-GAGCGTGAACCTGGAG-CCCACCCCACCTGATGCCCCCACACAGCCCTCGAAGGGTCTGACCTGCCAGCA
i macFas5.chr13                C 0 C 0
s cerAty1.NW_012000030v1         5670781 162 +   8072957 GTGGGTGGCCA-GGGCCTGACAGCAGTCCTCCAGGGAGTGACCACATCACCCAGCCGGGGTCCAGGGATCCTGGCCTGAGACTTGCCCAGTGCATT-GAGGGGACACCTGGAG-CCCACTCCACCTGATGCCCC--CGTAACCCTCACAGGGTCTGACCTCCCAGAA
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          202544 162 +   1331228 GTGGGTGGCTG-GGGCCTGACAGCAGTCCCCCAGGGAGGGACCACATCACCCAGGCGGGGTCCAGGGAACCTGGCCTGAGACTTGCCCAGTGCATT-GAGGGTACACCTGGAG-CCCACTCTACCTGATGCCCC--CACAGTCCTTGCAGGGTCTGACCTCCCAGCA
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           77494 164 +    168452 ATGGGTGACCA-GGGCCTGACAACAGTCCCCCAGGGAGTGAGCACATCACCCCGGTGGGGTCCAGGAAGCCTGTCCTGAGACCTGCCCAGTGCACT-GAGGGTGCACCTCGAG-CCCACTCCACCTGATGTCCCCACACAGCCCTCGAAGGGTCTGACCTCCCAGCA
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64700106   0 -  72162052 C
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=217879.000000
s hg38.chr14_GL000009v2_random     77479 75 +    201709 TGCACCTGCCTCTCCCTGAATTCCAGCT-GTCCACCCTGCCTGTTCCCTCACTTCCTCCATCCTGTCCA-GCAGGAT
s panTro5.chr9                  41760628 75 + 116767853 TGCACCTGCCTCTCCCTGCACCCCAGCT-GTCCACCCTGCCTGTTCCCTCACTTCCTCCGTCCTGTCCA-GCAGGAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96113166 75 - 114479721 TGCACCTGCCTCTCTCTGCACCCCAGCT-GTCCACCCTGCCTGTTCTCTCACTTCCTCCATCCTGTCCA-GCAGGAT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           53479 77 +     53730 TGCACCTGCCTCTCCCTGCACCCCAGCTGGTCCACGCTGCCTGTTCCCTCACTTCCTCCATCCTGTCCAGGCAGGAT
i gorGor5.CYUI01002030v1       C 0 C 0
s rheMac8.chr15                   572260 75 - 111343173 TGCACCTGTCTCTCCTTGCACCCCAGAT-GTCCACCCTGTCTGTTTCCTGACTTCCTCCATCCTGTCCA-GCAGGAT
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111166236 75 - 111193037 TGCACCTGCCTCTCCCTGCACCCCAGCT-GTCCACCCTGCCTGTTCCCTGACTTCCTCCATCCTCTCCA-GCAGGAT
i macFas5.chr13                C 0 C 0
s cerAty1.NW_012000030v1         5670943 75 +   8072957 TGCACCTGTCTCTCCTTGCACCCCAGAT-GTCCACCCTGTCTGTTTCCTGGCTTCCTCCATCCTGTCCA-GCAGGAT
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          202706 75 +   1331228 TGCACGTGCCTCTCGCTGCACCCCAGAT-GTCCACCCTGTCTGTTCCCTGACTTCTTTCATCCTGTCCA-GCAGGAT
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           77658 75 +    168452 TGCACCTGCCTCTCCCTGCACCCCAGCT-GTCCACCCTGCCTGTTGCCTGACTTCCTCCATCCTCTCCA-GCAGGAT
i colAng1.NW_012121088v1       C 0 C 0
e saiBol1.JH378105              64700106  0 -  72162052 C
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=527593.000000
s hg38.chr14_GL000009v2_random     77554 167 +    201709 ---GGG-ATGGGCAGGGGGACAGACTGTGTGCACATTTCATGGCAA-GCAGGAGTGACACACCATCCCTGGGAGGCG--TCTTGG-TTCCTCCAAAACCCGGCCCCAGAACTCTGTCCTTGGGGTGG--TTTTACCAAACCCCAAACCCAGAACTGTGGTTGTGGCTCAGGGGTCAG
s panTro5.chr9                  41760703 167 + 116767853 ---GGG-ATGGGCAGGGGGACAGCATGTGTGCACATTTCATGGCAA-GCAGGAGTGACACACCATCCCTGGGAGGTG--CCTTGG-TTCCTCCCAAACCCGGCCCCAGAACTCTGTCCCTGGGGTGG--TTTTACCAAACCCCAAACCCAGAACTGTGGTTGTGGCTCAGGGGTCAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96113241 167 - 114479721 ---GGG-ATGGGCAGGGGGACAGCCTGTGTGCACATTTCATGGCAA-GCAGGAGTGACACATCATCCCTGGGAGGCA--CCTTGG-TTCCTCCCAAACCCGGCCCCAGAACTCTGTCCCTGGGGTGG--TTTTACCAAATCCCAAACCCAGAACTGTGGTTGTGGTTCAGGGGTCAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01002030v1           53556 174 +     53730 ---GGGCATGGGCAGGAGGACAGCCTGTGTGCACATTTCATGGCAAGGTAGGAGTGACCCACCATCCCTGGGAGGCGGCCCTTGGTTTCCTCCCAAACCCGGGCCCAGAACTCTGTCCCTGGGGTGGGTTTTTACCGTACCCCAAACTCAGAACTGTGGTTGTGGCTCAGGGGTCAG
i gorGor5.CYUI01002030v1       C 0 N 0
s rheMac8.chr15                   572335 166 - 111343173 ---GGG-CTGGACAGTGGGA-AGCCTGTGTGCACATTTCGTGGCAA-GTAGGAGTGACACACCATCCCTGGGAGGCA--CCATGG-TTTCTGCCAAACCCAACCCCAGAACTCTGTCCCTGAGGTGG--TTTTACCAAACCCAAAACCCAGAACTGCGGTTGTGGCTCAGGGGTCAG
i rheMac8.chr15                C 0 C 0
s macFas5.chr13                111166311 167 - 111193037 ---GCG-ATGGGCAGAGGGACAGCCTATGTGCACATTTGGTGGCAA-GTAGGAGTGACACATCATCCCTGGAAGGGG--CCATGT-TTCCTGCCAAAGTCAACCCCAGAACTCTGTCCCTGAGGTGT--TTTTACCAAACCCAAAACGCACAACTGCGGTTGTGGCTCAAGGGTCAG
i macFas5.chr13                C 0 C 0
s cerAty1.NW_012000030v1         5671018 166 +   8072957 ---GGG-CTGGACAGTGGGA-AGCCTGTGTGCACATTTCCTGGCAA-GTAGGAGTGACACACCATCCCTGGGAGGCA--CCATGG-TTTCTGCCAAACCCAGCCCCAGAACTCTGTCCCTGAGGTGG--TTTTACCAAACCCAAAACCCAGAACTGCAGTTGTGGCTCAGGGGTCAG
i cerAty1.NW_012000030v1       C 0 C 0
s manLeu1.NW_012106397v1          202781 166 +   1331228 ---GGG-ATGGGCAGGGGGACAGCCTGTGTGC-CATTTCATGGCAA-GTAGGAGTGACACACCATCCCTGGGAGGCA--CCATGG-TTTCTGCCAAACCCAACCCCAGAACTCTGTCCCTGAGTTGG--TTTTACCAAACCCAAAACCCAGAACTGCAGTTGTGGCTCAGGGGTCAG
i manLeu1.NW_012106397v1       C 0 C 0
s colAng1.NW_012121088v1           77733 166 +    168452 ---GCG-ATGGGCAGAGGGACAGCCTATGTGCACATTTGGTGGCAA-GTAGGAGTGACACATCATCCCTGGAAGGGG--CCATGT-TTCCTGCCAAAGTCAACCCCAGAACTCTGTCCCTGAG-TGG--TTTTACCAAACCCAAAGCCCAGAACTGTGATTGTGGCTCAGAGGTCAG
i colAng1.NW_012121088v1       C 0 C 0
s saiBol1.JH378105              64700106 167 -  72162052 AGGGTG-GAGGTCAGGGGG-CAGCCTGTGTGCATGTTTGGTGA-AA-GTGGAAGTGACACACCATTCCTGGGCTGTG--CCATGA-TTTCTGCTAAACCTGA-CCCAGGACTCTGTCCATTAGGTGG--TTTTACCAAATCCAAAACCCAGAACTGCAGTTGTGTCTCAGGGGTCAG
i saiBol1.JH378105             C 0 C 0
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=32160.000000
s hg38.chr14_GL000009v2_random     77721 11 +    201709 CACCCGCTAGT
s panTro5.chr9                  41760870 11 + 116767853 CACCCGCTAGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                 96113408 11 - 114479721 CGCCCGCTGGT
i panPan2.chr13                C 0 C 0
s rheMac8.chr15                   572501 11 - 111343173 CACCCGCTAGT
i rheMac8.chr15                C 0 N 0
s macFas5.chr13                111166478 11 - 111193037 CACCCGCTAGT
i macFas5.chr13                C 0 N 0
s cerAty1.NW_012000030v1         5671184 11 +   8072957 CACCCGCTAGT
i cerAty1.NW_012000030v1       C 0 N 0
s manLeu1.NW_012106397v1          202947 11 +   1331228 CACCCGCTAGT
i manLeu1.NW_012106397v1       C 0 N 0
s colAng1.NW_012121088v1           77899 11 +    168452 CACCTGCTAGT
i colAng1.NW_012121088v1       C 0 N 0
s saiBol1.JH378105              64700273 11 -  72162052 TACCCACTAAT
i saiBol1.JH378105             C 0 N 0
e rhiRox1.KN297240v1               37224 18462 +     85661 I

a score=6727.000000
s hg38.chr14_GL000009v2_random    77732 13 +    201709 TCTACAATGTTGC
s panTro5.chr9                 41760881 13 + 116767853 TCTACAATGTCGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96113419 13 - 114479721 TCTACAATGTCGC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1704831 13 +   1849298 TCTACAATGTGGC
i gorGor5.CYUI01015545v1       N 0 C 0
s rhiRox1.KN297240v1              55686 13 +     85661 GCCAGAACACTAC
i rhiRox1.KN297240v1           I 18462 T 27227

a score=180628.000000
s hg38.chr14_GL000009v2_random    77745 384 +    201709 CAAGGACTTTGATTGTACAATGTTCTTCTTTTCAATAGTCATTCCAAATATTGTGAGATGCACTGTTTCAGGAAGTCCCTTGCCCTCCTAAAAGCCACCCTACTTCTCTCTAAGGAGAATGGCCCAGTCCTCTCCCGAGTTCACACATGGTAGGCGATAGCATTGCTTTTGTGTAAATTACATAATGCAAATTTTTTTAAATCTTTGCCTTAATACTTTTAAATTTTGTTTTATTTTGAATGACTAGCCTTCATGGCCCCACTTTTTTGTATCCCAACTTGGAATGTATGAAGGGTTTTGGTCTCCCTGAGAGTGGTTCGAGGCAGCCAGGGCTTACCTGTACTCTGACTTGAGAAAAGTTGGATAAAAGTGTTCACCTTAAAA
s panTro5.chr9                 41760894 380 + 116767853 CAAGGACTTTGACTGTACATTGTCCTTCTTTTCAATAGTCATTCCAAATATTGTGAGATGCATTGTTTCAGGAAGCCCCTTGCCCTCCTAAAAGCCACCCTATTTCTCTCTAAGGAGAATGGCCCAGTCCTCTCCCGAGTTCACACATGGTAGGTGATAGCATTGCTTTTGTGTAAATTACATAATGCAAATTTTTAAAAATCTTTGCATT----CTTTTAAATTTTGTTTTATTCTGAATGATTAGCCTTCATGGCCCCCCTTTTTTGTACCCCAACTTGGAGTGCATGAAGGGTTTTGGTCTCCCTGAGAGTGGCTGGAGGCAGCCAGGGCTTACCTGTACTCTGACTTGAGAAAAGTTGGATAAAAGTGCACATCTTAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96113432 381 - 114479721 CAAGGACTTTGACTGTACATTGTTCTTCTTTTCAATAGTCATTCCAAATATTGTGAGATGTATTGTTTCAGGAAGCCCCTTGCCCTCCTAAAAGCCACCCTACTTCTCTCTAAGGAGAATGGCCCAGTCCTCTCCCGAGTTCACACAGAGGAGGTGATAGCATTGC-TTTGTGTAAATTACATAATGCAAAAaattttaaatctttgcattaatacttttaacttttgttttatttttaatGATTAGCCTTCATGGCCCCCCTTTTTTGTACCCCAACTTGGAGTGTATGAAGGGTTTTGGTCTCCCTGAGAGCGGCTGGAGGCAGCCAGGGCTTATCTGTACTCTGAC--GAGAAAAGTTGGATAAAAGTGCACATCTTTAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1704844 383 +   1849298 TGAGGACTTTGATCGTACATTGTTTTTCTTTTCAATAGTCATTCCAAATATTGTGAGATGCATTGTTTCAGGAAGCCCCTTGCCCTTCTAAAAGCCACCCCACTTCTCTCTAAGGAGAATGGCCCAGTCCTCTCCCTAATTCACATAGGGGAGGTGATGGCATTGCTTTCATGCAAATTACATAATGCAAAATTTTTTGAATCTTTGCCTAAATACTTTTTAATTTTGTTTTACTTAGAATGATCAGCCTTCGCAGCCCCCCTTTTTTGTACCCCAACTTGGGGTGTATGAAGGCTTTTGGTCTCCCTGAGAGTGGCTGGAGGCAGCCAGGGCTTACCTGTACTCT-ACTTAAGGAGAGTTGGAAAAAAGTGCACACCTTAAAA
i gorGor5.CYUI01015545v1       C 0 C 0
e rhiRox1.KN297240v1              55699 27227 +     85661 T

a score=101901.000000
s hg38.chr14_GL000009v2_random    78129 50 +    201709 AAAATTGAATGACGAAGCATTAACAAAAA-CAGTATTTCAGTACAGTGGAC
s panTro5.chr9                 41761274 50 + 116767853 AAAATTGAATGACGAAGAATTAACAAAAA-CAGTATTTCAGTACAGTGGAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96113813 50 - 114479721 AAAATTGAATGACGAAGAATTAACAAAAA-CAGTATTTCAGTACAGTGGAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1705227 50 +   1849298 AAAATTCAATGAGGAGGCATTAACAAAAA-CAGTATTTCTGTACAGTGGAC
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1     3545 51 +     14195 AAAATTGAATGAGGAAGCATTAGCAAAAATCAGTATTTCAGTAGAGTGGAC
i rheMac8.chrUn_NW_015084737v1 N 0 C 0
s macFas5.chr8                 45002608 51 + 146850525 AAAATTGAATGAGGAAGCATTAGCAAAAATCAGTATTTCAGTAGAGTGGAC
i macFas5.chr8                 N 0 C 0
s chlSab2.chr2                 52405583 51 +  90373283 AAAATTGACTGAGGAAGCATTAGCAAAAATCAGTATTTCAGTAGAGTGGAC
i chlSab2.chr2                 N 0 C 0
s saiBol1.JH378275              2727420 50 -   3301637 AAAATTGGATAAGGAAGAATGAACAAAAA-CAGTATTTAAGTACAGTTGAC
i saiBol1.JH378275             N 0 C 0
e rhiRox1.KN297240v1              55699 27227 +     85661 T

a score=727062.000000
s hg38.chr14_GL000009v2_random    78179 322 +    201709 AGCTTAGCATTTTGACAATTGGGAATAAAATGCTCATTTCTGAACTGTACAATGTAAGACACAAAAACAAAACACTGGAAATGGAAATTCAATT--GTCATTATAGACTGGATACTGCTCTACA-TGACTGTGACCAAAGTCAGATAGTTGAAAGAGATTT--------CTTTCCAGAGAACAAGACATGAACAGGTTTATTTACAGA-AAACAATGAATTCTCATATATCTAACCTAAAATATAGC----AGATTCTTTCCGAACAA--GTCTAATGTAGACAGTAAAATTAATAGGCTAAAAATTAAACTCCATCAAACAAGATGAACTCTGAGAGAA
s panTro5.chr9                 41761324 324 + 116767853 AGCTTAGCATTTTGACAATTGGGAATCAAATGCACAGTTCTGAACTGTACAATGTAAGACACAAAAATGAAACACTGGAAATGGAAATTCAATTATGTCACTGTAGACTGGCTACTGCTCTACA-TGACTGTGACCAAAGTCAGATAGTTGAAAGAGATTT--------CTTTCCAGAGAACAAGACATGAACAGGTTTATTTACAGA-AAACAATGAATTCTCATATATCTAACCTAAAAGATAAC----AGATTCTTTCTGAACAA--GTCTAATGTAGACAGTAAAATTAACAGGCTAAAAATTAAGCTCCATCAAACAAGATgaactctgagagaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96113863 322 - 114479721 AGCTTAGCATTTTGACAATTGGGAATAAAATGCGCAGTTCTGAACTGTACAATGTAAGACACAAAAACGAAACACTGGAAATGGAAATTCAATTATGTCACTGTAGACTGGCTACTGCTCTACA-TGATTGTGACCAAAGTCAGATAGTTGAAAGAGATTT--------CTTTCCAGAGAACAAGACATGAACAGGTTTATTTACAGA-AAAAA--GAATTCTCATATATCTAACCTAAAATATAAC----AGATTCTTTCAGAACAA--GTCTAACGTAGACAGTAAAATTAACAGGCTAAAAATTAAGCTCCATCAAACAAGATGAACTCTGAGAGAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1705277 322 +   1849298 AGCTTAGCATGTTGACAACTGAGAATAAAATGCTCAGTTCTGAACTGGACAGTGTAAGACACAACGACGAAACACTGGAAATGGAAATTCAGTTACGTCATTGTAGACTGGCTACTGCTCTACA-TGATTGTGACCAAAGTCATAGAGCTGAAAGAGACTT--------CTTT-CAGAGAACAAGACATGAACAGGTTTATTTACAGA-AGACAATGAATTCTCATTTGTCTAACCTAAAAGATA-C----AGATTCTTTCTCAACAA--GTCTAATGTAGACAGTAAAATCAACAGGCTAAAAATTAAGTTCCGTGAAACAAGATAAACTCTGAGAGAA
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1     3596 322 +     14195 AGCTTAGCATTTTGACCTCTGAG-----AATGCTCAGTTCTGAACTGCAGAATGTAAGACACAGCTAGGAAACACTGGAAATGGAAATCCTATCATGTCGTTTTAGACTGACTACTGCCCTACA-TGACTGTGATCAATGTCAAATAGATGAAAGAGACTT--------CTTTACAGAGAACAA-ACATGAACAGGTTTATTTACAGG-AAAAAATGAATTCTCATATATCTAACCTAAAAGATAACAGTGAGATTCTTTCTGAACAA--CTCTAATGTTGACAGCAAAATTAACAGCCTAAACATTAAGCTGCATCACACAGGATAAACTCTGAGAGAC
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45002659 322 + 146850525 AGCTTAGCATTTTGACCGCTGAG-----AATGCTCAGTTCTGAACTGCAGAATGTAAGACACAGCTAGGAAACACTGGAAATGGAAATCCTATCATGTCGTTTTAGACTGACTACTGCCCTACA-TGACTGTGATCAATGTCAAATAGATGAAAGAGACTT--------CTTTACAGAGAACAA-ACATGAACAGGTTTATTTACAGG-AAAAAATGAATTCTCATATATCTAACCTAAAAGATAACAGTGAGATTCTTTCTGAACAA--CTCTAATGTTGACAGCAAAATTAACAGCCTAAACATTAAGCTGCATCACACAGGATAAACTCTGAGAGAC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52405634 323 +  90373283 AGCTTAGCATTTTGACCGCTGAG-----AATGCTCAGTTCTGAACTGCAGAATGTAAGACACAGCTAGGAAACACTGGAAAAGGAAATCCTATCATGTCGTTTTAGACTGACTACTGCCCTACA-TGACTGTGATCAATGTCAAATAGATGAAAGAGACTT--------CTTTACAGAGAACAA-ACATGAACAGGTTTATTTACAGGAAAAAAATGAATTCTCATATATCTAACCTAAAAGATAACAGTGAGATTCTTTCTGAACAA--CTCTAATGTTGACAGCAAAATTAACAGCCTAAACATTAAACTGCATCACACAGGATAAATTCTGAGAGAC
i chlSab2.chr2                 C 0 C 0
s saiBol1.JH378275              2727470 327 -   3301637 AGCTTAACACTTTGGCAACGAAGAATAAAATGGTCAGTTCTGAACTGGAGAATGTAAGACACAACTAGGAAACAGTGTAATTGGAAATTCAGTCATGTCATTGTAGACTGGCTACTGCTCTACATTGATTGTGACCAAAGCCAGATAGCAGAAAGAGACTT--------CTTTCCAGAGAACAAGATATGAACATGTTTATTTATAGG-AGACAGTGAATTGTCATATATCTTACCTAAAAGATAACAGTGAGATTCTTTCTGAACAA--CTGTAATGCTTACAGTAAAATTAACAGCTTAAAAATTCAACTCCATCACAGAGGATAAA--CTGAACGAA
i saiBol1.JH378275             C 0 C 0
s tarSyr2.ABRT02072612v1           5986 338 -      6847 AGCTTGAGGTTTTGGCAGCTGAGAAGAAAATGCTCATTTCTAAACTGGAGGATGAAAAACACAACAAGGAAAGACTGGAAACAAAGGTTGAATCATACCGTTCCAGACTAGCTGTGGCTGTCCG-TGAGCATGATGAAAGTCAGACATCAAAAAGAGACTTAGAAATTGCCTTCCAGAGAGCAAGAGATGAGTGGCTTCTTTTACAGA-ACAAAATGAATTTTGAAGTGTCTCACCTAAAAGATAAGAATGAGATTCTTTTGAAACTACTGTCCAAGGCTGAAAGTAAATTCAGTAGCCTACAACTGGAGCTCTATCACACAAGAGATGCTCTCAAGAAA
i tarSyr2.ABRT02072612v1       N 0 N 0
e rhiRox1.KN297240v1              55699 27227 +     85661 T

a score=123576.000000
s hg38.chr14_GL000009v2_random    78501 63 +    201709 TAGATggggcaggccgccatctttccggttcaggcaacttagtcattccagcctgagggcttt
s panTro5.chr9                 41761648 63 + 116767853 tagatggggcaggccgccatctttccttttcaggcaacttagtcattccaccctgagggcttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96114185 63 - 114479721 TAGATggggcaggcctccatctttcctgttcaggcaacttagtcattccagcctgagggcttt
i panPan2.chr13                C 0 I 6438
s gorGor5.CYUI01015545v1        1705599 62 +   1849298 AAGATggggcaggctgccatctttcccgttcgggcaacttagtcattccag-ctgagggcttt
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1     3918 63 +     14195 AAGATggggcaggcccccatctttcctgttcagacaacttagtcattctagtgtgtgggcttt
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45002981 63 + 146850525 AAGATggggcaggcccccatctttcctgttcagacaacttagtcattctagtgtgtgggcttt
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52405957 63 +  90373283 AAGATggggcaggcccccatctttcctgttcagacaacttagttattctagtgtgtgggcttt
i chlSab2.chr2                 C 0 C 0
s saiBol1.JH378275              2727797 63 -   3301637 AAGATggggcaggctgccgtctttcctggtggaggaacttagttattccagtctacatgtgtt
i saiBol1.JH378275             C 0 C 0
e rhiRox1.KN297240v1              55699 27227 +     85661 T

a score=1268492.000000
s hg38.chr14_GL000009v2_random    78564 851 +    201709  
s panTro5.chr9                 41761711 841 + 116767853  
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1705661 838 +   1849298  
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1     3981 906 +     14195  
i rheMac8.chrUn_NW_015084737v1 C 0 I 23
s macFas5.chr8                 45003044 882 + 146850525  
i macFas5.chr8                 C 0 I 23
s chlSab2.chr2                 52406020 882 +  90373283  
i chlSab2.chr2                 C 0 I 51
s saiBol1.JH378275              2727860 890 -   3301637  
i saiBol1.JH378275             C 0 C 0
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T

a score=29944.000000
s hg38.chr14_GL000009v2_random    79415 29 +    201709 tctacttgatgggcaggtcctactgacct
s panTro5.chr9                 41762552 29 + 116767853 tctacttgatgggcaggtcctcctggcct
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1706499 29 +   1849298 tgtacttgatgggcagatcctcctggcct
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1     4910 29 +     14195 tctcctcgatggacaggccctcctggccg
i rheMac8.chrUn_NW_015084737v1 I 23 C 0
s macFas5.chr8                 45003949 29 + 146850525 tctcctcgatggacaggccctcctggccg
i macFas5.chr8                 I 23 C 0
s saiBol1.JH378275              2728750 29 -   3301637 tctccttgagggacaggtcctgctggcct
i saiBol1.JH378275             C 0 C 0
e chlSab2.chr2                 52406902 51 +  90373283 I
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T

a score=1535257.000000
s hg38.chr14_GL000009v2_random    79444 1001 +    201709  
s panTro5.chr9                 41762581 1000 + 116767853  
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1706528  993 +   1849298  
i gorGor5.CYUI01015545v1       C 0 I 713
s rheMac8.chrUn_NW_015084737v1     4939  996 +     14195  
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45003978  996 + 146850525  
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52406953  996 +  90373283  
i chlSab2.chr2                 I 51 C 0
s saiBol1.JH378275              2728779  963 -   3301637  
i saiBol1.JH378275             C 0 C 0
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T

a score=1717921.000000
s hg38.chr14_GL000009v2_random    80445 1498 +    201709  
s panTro5.chr9                 41763581 1497 + 116767853  
i panTro5.chr9                 C 0 C 0
s rheMac8.chrUn_NW_015084737v1     5935 1510 +     14195  
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45004974 1514 + 146850525  
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52407949 1512 +  90373283  
i chlSab2.chr2                 C 0 C 0
s saiBol1.JH378275              2729742 1504 -   3301637  
i saiBol1.JH378275             C 0 C 0
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T
e gorGor5.CYUI01015545v1        1707521  713 +   1849298 I

a score=56528.000000
s hg38.chr14_GL000009v2_random    81943 44 +    201709 ttctcagctgaaaccctacaagccagaaaagatattcaacttct
s panTro5.chr9                 41765078 44 + 116767853 ttctcagctgaaaccctacaagccagaaaagatattcaacttct
i panTro5.chr9                 C 0 C 0
s ponAbe2.chrUn                67690839 44 -  72422247 ctctcagctgaagccctgcaagccagaaaagatattcaacttct
i ponAbe2.chrUn                N 0 I 5083
s rheMac8.chrUn_NW_015084737v1     7445 35 +     14195 ctctcagctgaaacccaacaaaccagaa---------aatttct
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45006488 35 + 146850525 ctctcagctgaaacccaacaaaccagaa---------aatttct
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52409461 44 +  90373283 ctctcagctgaaacccgacaaaccagaaaagatattcaacttct
i chlSab2.chr2                 C 0 C 0
s saiBol1.JH378275              2731246 43 -   3301637 cactcagctgaaacccag-aagccagaagaaatactcaacttct
i saiBol1.JH378275             C 0 C 0
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T
e gorGor5.CYUI01015545v1        1707521 713 +   1849298 I

a score=576382.000000
s hg38.chr14_GL000009v2_random    81987 575 +    201709  
s panTro5.chr9                 41765122 578 + 116767853  
i panTro5.chr9                 C 0 C 0
s rheMac8.chrUn_NW_015084737v1     7480 494 +     14195  
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45006523 494 + 146850525  
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52409505 493 +  90373283  
i chlSab2.chr2                 C 0 C 0
s saiBol1.JH378275              2731289 490 -   3301637  
i saiBol1.JH378275             C 0 I 305
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T
e ponAbe2.chrUn                67690883 5083 -  72422247 I
e gorGor5.CYUI01015545v1        1707521 713 +   1849298 I

a score=8734.000000
s hg38.chr14_GL000009v2_random    82562 18 +    201709 cagtttc-gacaaaacgta-
s panTro5.chr9                 41765700 18 + 116767853 tagtttc-gacaaaacgta-
i panTro5.chr9                 C 0 C 0
s rheMac8.chrUn_NW_015084737v1     7974 20 +     14195 tagttcctgaccaaacggac
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45007017 20 + 146850525 tagttcctgaccaaacggac
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52409998 20 +  90373283 tagttcctgaccaaacggac
i chlSab2.chr2                 C 0 C 0
e saiBol1.JH378275              2731779 305 -   3301637 I
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T
e ponAbe2.chrUn                67690883 5083 -  72422247 I
e gorGor5.CYUI01015545v1        1707521 713 +   1849298 I

a score=22915.000000
s hg38.chr14_GL000009v2_random    82580 22 +    201709 tataccaataaagataaaaaaa
s panTro5.chr9                 41765718 22 + 116767853 tataccaataaagataaaaaaa
i panTro5.chr9                 C 0 I 1
s rheMac8.chrUn_NW_015084737v1     7994 22 +     14195 tatagcaataaagataaaaaaa
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45007037 22 + 146850525 tatagcaataaagataaaaaaa
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52410018 22 +  90373283 tatagcaataaagataaaaaaa
i chlSab2.chr2                 C 0 I 4150
s saiBol1.JH378275              2732084 19 -   3301637 tataccaataaagattaag---
i saiBol1.JH378275             I 305 C 0
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T
e ponAbe2.chrUn                67690883 5083 -  72422247 I
e gorGor5.CYUI01015545v1        1707521 713 +   1849298 I

a score=4820.000000
s hg38.chr14_GL000009v2_random    82602 5 +    201709 gacag
s panTro5.chr9                 41765741 5 + 116767853 gacag
i panTro5.chr9                 I 1 C 0
s rheMac8.chrUn_NW_015084737v1     8016 5 +     14195 gacag
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45007059 5 + 146850525 gacag
i macFas5.chr8                 C 0 I 299
s saiBol1.JH378275              2732103 5 -   3301637 gacag
i saiBol1.JH378275             C 0 C 0
e chlSab2.chr2                 52410040 4150 +  90373283 I
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T
e ponAbe2.chrUn                67690883 5083 -  72422247 I
e gorGor5.CYUI01015545v1        1707521 713 +   1849298 I

a score=1910.000000
s hg38.chr14_GL000009v2_random    82607 2 +    201709 ag
s panTro5.chr9                 41765746 2 + 116767853 ag
i panTro5.chr9                 C 0 C 0
s rheMac8.chrUn_NW_015084737v1     8021 2 +     14195 ag
i rheMac8.chrUn_NW_015084737v1 C 0 I 304
s macFas5.chr8                 45007363 2 + 146850525 ag
i macFas5.chr8                 I 299 C 0
s saiBol1.JH378275              2732108 2 -   3301637 ag
i saiBol1.JH378275             C 0 C 0
e chlSab2.chr2                 52410040 4150 +  90373283 I
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T
e ponAbe2.chrUn                67690883 5083 -  72422247 I
e gorGor5.CYUI01015545v1        1707521 713 +   1849298 I

a score=1479.000000
s hg38.chr14_GL000009v2_random    82609 6 +    201709 aaggtc
s panTro5.chr9                 41765748 6 + 116767853 aatgac
i panTro5.chr9                 C 0 C 0
s macFas5.chr8                 45007365 6 + 146850525 aaGGAG
i macFas5.chr8                 C 0 C 0
s saiBol1.JH378275              2732110 6 -   3301637 aaggac
i saiBol1.JH378275             C 0 C 0
e rheMac8.chrUn_NW_015084737v1     8023 304 +     14195 I
e chlSab2.chr2                 52410040 4150 +  90373283 I
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T
e ponAbe2.chrUn                67690883 5083 -  72422247 I
e gorGor5.CYUI01015545v1        1707521 713 +   1849298 I

a score=3365.000000
s hg38.chr14_GL000009v2_random    82615 4 +    201709 atta
s panTro5.chr9                 41765754 4 + 116767853 atta
i panTro5.chr9                 C 0 C 0
s rheMac8.chrUn_NW_015084737v1     8327 4 +     14195 ATTA
i rheMac8.chrUn_NW_015084737v1 I 304 C 0
s macFas5.chr8                 45007371 4 + 146850525 ATTA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52414190 4 +  90373283 ATTA
i chlSab2.chr2                 I 4150 C 0
s saiBol1.JH378275              2732116 4 -   3301637 atGT
i saiBol1.JH378275             C 0 C 0
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T
e ponAbe2.chrUn                67690883 5083 -  72422247 I
e gorGor5.CYUI01015545v1        1707521 713 +   1849298 I

a score=473855.000000
s hg38.chr14_GL000009v2_random    82619 303 +    201709 caAaggtggccctgacctttgataaatctcgttattgattgataccaacatgggctatctttattgcccaaaccaacaggataatttgctgaggttgtggagcttctcccctgcaaagagtccctggtctcccaaaatctggttgagatctaagtttgatttttctgtacaactccttttctgaagttttactcatttccaacaaggaaggcaag-ttttcctgcttctgtggtgatggagagcaggcacctcctttcctgagtttcagcttgcttctgacagggaaggtgagtgtaagttgtt
s panTro5.chr9                 41765758 253 + 116767853 caAaggtggtcctgacctttgataaatctcattattgattgataccaacctgggctatctttattgcccaaaccaacaggataatttgctgaggttgtggagcttctcccctgcaaagagtccctgatctcccaaaatctggttgagatctaagtttgattttgctgtacaactccttttctgaagttttactcatttccaacaaggaaggcaag-ttttcctgcttctgtggtga--------------------------------------------------aggtgagtgtaaattgtt
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1708234 296 +   1849298 caaaggtggtcctgacctttgataaatctcattattgcttgatactaacctgggctatctttattgcccaaaccaataggataa-ttgctgaggttagggagcttctaccctgcagagaatccctgatct-ccaaaatttggttgagatctaaggttgattttgctatacaact-cttttctgaagttttacttatttccaac----aaggcaag-ttttcctgcttccatgatgatggagagcaggcacctcctttcttgagtttcagcttgcttctgacagggaaggtgagtgtaagttttt
i gorGor5.CYUI01015545v1       I 713 C 0
s rheMac8.chrUn_NW_015084737v1     8331 303 +     14195 CAAaggtggtcctgacctttgataaatctcattattgattgataccaacctgggctatctttattgcccaaaccaataggataatttgctgaggttggggagcttctcccctgcagagagttcctgatcacccaaaatttggttgagatctaaagttgattttgctgtacaagtccttttctgaagttttactcatttccaacaacgaaggcaag-ttttcctgcttccatggcgatggagagcaggcacctcctttcctgagtttcggcttgcttctgacaggaaaggtgagtgtcagttttt
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45007375 303 + 146850525 CAAaggtggtcctgacctttgataaatctcattattgattgataccaacctgggctatctttattgcccaaaccaataggataatttgctgaggttggggagcttctcccctgcagagagttcctgatcacccaaaatttggttgagatctaaagttgattttgctgtacaagtccttttctgaagttttactcatttccaacaacgaaggcaag-ttttcctgcttccatggcgatggagagcaggcacctcctttcctgagtttcggcttgcttctgacaggaaaggtgagtgtcagttttt
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52414194 303 +  90373283 CAAaggtggtcctgacctttgataaatctcattattgattgataccaacctgggctatctttattgcccaaaccaataggataatttgctgaggttggggagtttctcccctacagagagttcctgatctcccaaaatttggttaagatctaaagttgattttgctgtacaagtccttttctgaagttttactcatttccaacaacgaaggcaag-ttttcctgcttccatggcgatggagagcaggcacctcctttcctgagttttggcttgcttctgacaggaaaggtgagtgtcagttttt
i chlSab2.chr2                 C 0 C 0
s saiBol1.JH378275              2732120 299 -   3301637 CAAAGGTGGCCCTGCCCTTTGGTAAATCTCATTATtgcttgatcccaacctgggccattcttattgttcaaaccaataggttaatttgctgaggttggggagcttctcccctccagagagtccctgatctcccaaaatttggttgagatctaaggttcgttttgctttacagctcctc-----aagttttactcatttccaacaagaaaggcaagtttttcctgcttccatgatgatggagagcaggcacctccgttcttcagtttcagcttgcttctaacagggaaggtgagtatgagttttt
i saiBol1.JH378275             C 0 C 0
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN297240v1              55699 27227 +     85661 T
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=1577.000000
s hg38.chr14_GL000009v2_random    82922 1 +    201709 t
s panTro5.chr9                 41766011 1 + 116767853 t
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1708530 1 +   1849298 t
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1     8634 1 +     14195 t
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45007678 1 + 146850525 t
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52414497 1 +  90373283 t
i chlSab2.chr2                 C 0 C 0
s rhiRox1.KN296402v1             558973 1 -    657959 c
i rhiRox1.KN296402v1           n 27227 n 27227
s rhiBie1.NW_016824811v1           3658 1 -    113707 c
i rhiBie1.NW_016824811v1       N 0 N 0
s saiBol1.JH378275              2732419 1 -   3301637 t
i saiBol1.JH378275             C 0 C 0
e panPan2.chr13                96114248 6438 - 114479721 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=481385.000000
s hg38.chr14_GL000009v2_random    82923 348 +    201709 tcagcttctaagatggcagagaacgatcaccagcctgagccttgtttccaggtgagtagctgaattagagttttgtcttaaaatttgtccttaatgactaaaatttaagattactcaccagctgcttttaatttctgcttttagtttctccttaccattagaacactcagtaatcatatgaattgtgcatttg-ttgttttgcttaactctttttgtttgtttatgcttggggct---ttattgttgtttcacttttctccct-------------TCTCTtcctgacttggtcaaatccaaaggaattttccaaattgtggggagcaaggcctctgaattggctaaaactcctatggctgcaa-a-
s panTro5.chr9                 41766012 347 + 116767853 ccagcttctaagatggcagagaacgatcaccagcctgagccttgtttccaggtaagtagctgaattagagttttgtcttaaaatttttccttaatggctaaaatttaagattactcaccagctgcttttaatttctgcttttagtttctccttacctttagaacactcagtaatcatatgaattgtgcatttg-ttattttgcttaactctttttgtttgtttatgcttggggct---ttattgttgtttcacttttctccGT--------------CTCTtcctgacttggtcaaatccaaaggaattttccaaattgtggggagcaagacctctgaattggctaaaactcctacggctgcaa-a-
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1708531 333 +   1849298 ccagcttctaagatagcagagaacaatcaccagcctgagacttatttccaggtaagtagctgaattagagttttgtcttaaaattt-tccttaatgactaaaatttaagattactcaccagctgcttttaa-------------tttctcgttaccattagaacactcagtaatcatatgaattgtgcatttg-tttgtttgcttaactc-ttttgtttgtttatgtttggggttttgttgttgttgtttcacttttctccca-------------tctcttcctgacttggtgaaatccaaa-gaatgctccaaattgtgggga-caaggcttctgaa-tggctaaaactcatgtggctgcaa-a-
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1     8635 337 +     14195 ccagcttctaagatggcagagaacgatcaccagcctgagccttatttccaggtaagtaactgaattagacttttgtcttaaaattt-tttctaatgactaaaatttaagattatccaccagctacttttaa-------------tttctccttaccatgagaacactcagtaatcatataaatggtgcatttgtttgttttgctcaattctttgtgtgtgtttgtgtttggggttttattgttgttgtttcacttttctccca-------------tctcttcctgacttggtcaaatccaaggaaatgttccaaattgtggggagcaaggcatctgaattggctaaaagccctgtggctgcaa---
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45007679 337 + 146850525 ccagcttctaagacggcagagaacgatcaccagcctgagccttatttccaggtaagtaactgaattagacttttgtcttaaaattt-tttctaatgactaaaatttaagattatccaccagctacttttaa-------------tttctccttaccatgagaacactcagtaatcatataaatggtgcatttgtttgttttgctcaattctttgtgtgtgtttgtgtttggggttttattgttgttgtttcacttttctccca-------------tCTCTtcctgacttggtcaaatccaagggaatgttccaaattgtggggagcaaggcatctgaattggctaaaagccctgtggctgcaa---
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52414498 338 +  90373283 ccagcttctaagatggcagagaacgatcaccagcctaagccttatttccaggtaagtagctgaattagaattttgtcttaaaatgg-tttctaatgactaaaatttaagattatccaccagctgcttttaa-------------tttctccttaccatgagaacactcagtaatcatataaatggtgcatttgtttgttttgctcaattctttgtgtgtgtttgtgtttggggttttattgttgttgtttcacttttctccca-------------tCTCTtcctgacttggtcaaatccaaggaaatgttccaaattgtggggagcaaggcatctgaattggctaaaagccctgtggctgcaaa--
i chlSab2.chr2                 C 0 I 6
s saiBol1.JH378275              2732420 314 -   3301637 cctgcttttaagatggtagagaacaatcatcagcctgagccttattttcagataaatagctaaattagagatttgtcttaaaattt-tttttaatgacgaaaagtta-----accaaccagctggttttaa-------------tttc---ttaccattagaacgctcagtaatcataggaattgtacatttgcttgttttgcttaactgtt--------tttatgtttggggtt------ttgttgtttcacttttCTTCCATCAAGTATGGCCATCTCCTTCTGACTTGGTCAAATCCAAAGGAATGTTCCAAATTGTGGAAAGCAAGTCATCT----------------TTGTAGCTGCCa-aa
i saiBol1.JH378275             C 0 C 0
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=-1497.000000
s hg38.chr14_GL000009v2_random    83271 28 +    201709 caaacaaacaaa--------------caaataaacaacaaCA
s panTro5.chr9                 41766359 24 + 116767853 caaacaaacaaa------------------taaacaacaata
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1708864 42 +   1849298 aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1     8972  7 +     14195 -----aaatgaa------------------------------
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45008016  7 + 146850525 -----aaATGAA------------------------------
i macFas5.chr8                 C 0 C 0
s saiBol1.JH378275              2732734 28 -   3301637 aaaaaaaagaaa--------------aaaagaaaaaagaaaa
i saiBol1.JH378275             C 0 C 0
e chlSab2.chr2                 52414836  6 +  90373283 I
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=1675997.000000
s hg38.chr14_GL000009v2_random    83299 1177 +    201709  
s panTro5.chr9                 41766383 1170 + 116767853  
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1708906 1129 +   1849298  
i gorGor5.CYUI01015545v1       C 0 I 5
s rheMac8.chrUn_NW_015084737v1     8979 1187 +     14195  
i rheMac8.chrUn_NW_015084737v1 C 0 I 6
s macFas5.chr8                 45008023 1186 + 146850525  
i macFas5.chr8                 C 0 I 6
s chlSab2.chr2                 52414842 1184 +  90373283  
i chlSab2.chr2                 I 6 I 6
s saiBol1.JH378275              2732762 1194 -   3301637  
i saiBol1.JH378275             C 0 C 0
e panPan2.chr13                96114248 6438 - 114479721 I
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=457456.000000
s hg38.chr14_GL000009v2_random    84476 225 +    201709 ctttgtagattctgcatattagccctttgtcagatggatagattgcaacaatgttctcccattctgtgggttgcctgttcactctgataatagttt----cttttgcactgcagatactcttaagtttagttagatcccatttgtaaattttggtttttgtagccattgcttttggtgttctagtgatgaagactctgcccatggctatgtcctgaatggtattgccta
s panTro5.chr9                 41767553 225 + 116767853 ctttgtagattctgcatattagccctttgtcagatggatagattgcaacaatgttctcccattctgtgggttgcctgttcactctgataatagttt----cttttgtgctgcagatactcttaagtttagttagatcccatttgtaaattttggtttttgtagccattgcttttggtgttctagtgatgaagtctctgcccatggctatgtcctgaatggtattgccta
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96120686 224 - 114479721 ctttgtagattctgcatattagccctttgtcagatggatagattgcaacaatgttctcccattctgtgggttgcctgttcactctgataatagttt----cttttgcgctgcagatactgtttag-ttagttagatcccatttgtcaattttggtttttgttgccattgctttttgtgttctggtgatgaagtctctgcccatggctctgccctgaatgatattgccta
i panPan2.chr13                I 6438 C 0
s gorGor5.CYUI01015545v1        1710040 225 +   1849298 ttttatagattctgcatattagccctttgtcagatgaatagattgcaacaattttctcccattctgagggttgcctgttcactctgatgatagttt----cttttgctgtgcagacactctttagtttaattagatcccatttgtcaattttggcttttgttgccatcacttttggtgttctagtgatgaagtcttcgcctatgcctatgtcctgaatggtattgccta
i gorGor5.CYUI01015545v1       I 5 C 0
s rheMac8.chrUn_NW_015084737v1    10172 223 +     14195 ctttgtagattatgtatattagcccttggtcagatggagagattgcaataaatttctctcattctgtgggttgcctgttcactccgatgattgttt----cttttgctctgcagacactgt--agtttaattagatcccatttgtcaattttggctttggttgccattgcttttggtgttctagtgatgaagactttgtccatgcctatgtcctgaatggtattgccCC
i rheMac8.chrUn_NW_015084737v1 I 6 C 0
s macFas5.chr8                 45009215 223 + 146850525 ctttgtagattatgtatattagcccttggtcagatggagagattgcaataaatttctctcatcctgtgggttgcctgttcactctgatgattgttt----cttttgctctgcagacacagt--agtttaattagatcccatttgtcaattttggctttggttgccattgcttttggtgttctagtgatgaagactttgtccatgcctatgtcctgaatggtattgccCC
i macFas5.chr8                 I 6 C 0
s chlSab2.chr2                 52416032 223 +  90373283 ctttgtagattatgtatattagcccttggtcagatggagagattgcaataaatttctctcattctgtgggttgcctgttcactctgatgattgttt----cttttgctctgcagacactgt--agtttaattagatcccatttgtcaattttggctttggttgccattgcttttggtgttctagtgatgaagactttgtccatgcctatgtcctgaatggtattgccCT
i chlSab2.chr2                 I 6 C 0
s saiBol1.JH378275              2733956 228 -   3301637 ctttgtatattctgcatattatccttttgtcacatggatagagtgcaaaaatgttctcccattctgtaggttgcctgttcactctgattttctttttttctttttgctgtgcaga-gctttttagtttaattagatctcatttgccaatttttatgtttgttgccattgcttttggcattttaattatgaaatctttgcccatgtctgcattctaaatggtattgccta
i saiBol1.JH378275             C 0 N 0
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=922441.000000
s hg38.chr14_GL000009v2_random    84701 595 +    201709  
s panTro5.chr9                 41767778 595 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96120910 595 - 114479721  
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1710265 585 +   1849298  
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1    10395 599 +     14195  
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45009438 599 + 146850525  
i macFas5.chr8                 C 0 I 551
s chlSab2.chr2                 52416255 599 +  90373283  
i chlSab2.chr2                 C 0 C 0
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=1788.000000
s hg38.chr14_GL000009v2_random    85296 2 +    201709 GC
s panTro5.chr9                 41768373 2 + 116767853 AC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96121505 2 - 114479721 GC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1710850 2 +   1849298 GT
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1    10994 2 +     14195 GT
i rheMac8.chrUn_NW_015084737v1 C 0 I 579
s macFas5.chr8                 45010588 2 + 146850525 GT
i macFas5.chr8                 I 551 C 0
s chlSab2.chr2                 52416854 2 +  90373283 GT
i chlSab2.chr2                 C 0 C 0
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=18965.000000
s hg38.chr14_GL000009v2_random    85298 19 +    201709 AACGTTGATGGCTAGTCCA
s panTro5.chr9                 41768375 19 + 116767853 GACGTTGATGGCTAGTCCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96121507 19 - 114479721 GATGTTGATGGCTAGTCCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1710852 19 +   1849298 GAGGTTGGTGGCTGGTCCA
i gorGor5.CYUI01015545v1       C 0 I 1225
s macFas5.chr8                 45010590 19 + 146850525 GAGGTTGGTGGCTGGTCCA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52416856 19 +  90373283 CAGGTTGACGAGTGGTCCA
i chlSab2.chr2                 C 0 C 0
e rheMac8.chrUn_NW_015084737v1    10996 579 +     14195 I
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=2906.000000
s hg38.chr14_GL000009v2_random    85317 9 +    201709 ACCACTTCA
s panTro5.chr9                 41768394 9 + 116767853 ACCACTTCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96121526 9 - 114479721 ATCACTCCA
i panPan2.chr13                C 0 C 0
s macFas5.chr8                 45010609 9 + 146850525 CCAGCTCCT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52416875 9 +  90373283 CCTGCTCCG
i chlSab2.chr2                 C 0 I 383
e rheMac8.chrUn_NW_015084737v1    10996 579 +     14195 I
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I
e gorGor5.CYUI01015545v1        1710871 1225 +   1849298 I

a score=356274.000000
s hg38.chr14_GL000009v2_random    85326 227 +    201709 GGCACACCCTTGCAAACGCGGCTGGTTGCTTTTTGAGCCAGCTTGGCCTTGCCCGGCATACACAAGCCTCAATGCAACAACTTTCCTAAAAATGGAGCCCCACAGAGGAAATGAGCAGCAAGCTCAGAAGCAGGGTGTGCACTGCCTTTGGGGCTCCAGTCCATGCCTCAGGGCTTGTATGGGACTGCAGGATTCTTGGTTGCCAAGAGGTAGACCATAGACCAGCC
s panTro5.chr9                 41768403 225 + 116767853 GGCACACCCTTGCAAATGCGGATGGTTGCTTTTTGAGCCAGCTTGGCCTTGCCCGGCATACACAAGCCTCAATGCAACAACT--GCTAAAAATGGAGCCACACAGAGGAAATGAGCAGCAAGCTCAGAAGCAGGGTGTGCACTGCCTTTGGGGCTCCAGTCCATGCCTCAGGGCTTGTATGGGACTGCAGGATTCTTGGTTGCCAAGAGGTAGACCATAGACCAGCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96121535 225 - 114479721 GGCACACCCTTGCAAACGCGGCTGGTTGCTTTTTGAGCCAGCTTGGCTTTGCCCGGCATGCACAAG--TCAGTGCAACAACTGTGACACAAATGGAGCCACACAGAGAAAATGAGCAGCAGGCTCAGGAGCAGGGTGTGCGCTGCCTTGGGGGCTCCAGTCCATACCTCAGGGCTCATATGGCACTGCGGGCTTCTTGGTTGCAAAGAGGCAGACCACAGGCCATCT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1712096 224 +   1849298 GGCACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCCGGCATGCACAAGCCTCAGTGCAACAACTGTCCTACAAATGGAGCCACA-AGAGGAAACAAGCAGCAGGCTCAGGAGCAGGGTGTGCACTGCCTTTGGGGCTCCAGTCCATGCCTCAGGG-TCATATGGTACTG-GGGCTTCTTGGTTGCCAAGAGGCAGACCACAGGCCATCT
i gorGor5.CYUI01015545v1       I 1225 C 0
s rheMac8.chrUn_NW_015084737v1    11575 227 +     14195 GGCACACCCTTGCAGAGGTGGTTGGCTGCTTTTTGAGCCAGCTTGGCCTTGCCTGGCATGTACAAGCCTCAGTGCAACAACTGTCTTACACATGGAGCCACATAGAGGAAAGGAGCAGCAGGCTCAGGAGCAGGGTGTGCGCTGCCTTTAGGGATCCAGTCAATTCCTCAGGGCTAATATGGCACTGTGGGCTTCTTTGTTGCCAAGAGAGAGACCACAGGCTGTCT
i rheMac8.chrUn_NW_015084737v1 I 579 I 1
s macFas5.chr8                 45010618 227 + 146850525 GGCACACCCTTGCAGAGGTGGTTGGTTGCTTTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAAGCCTCAGTGCAACAACTGTCTTACACATGGAGCCACATAGAGGAAAGGAGCAGCAGGCTCAGGAGCAGGGTGTGCGCTGCCTTTAGGGATCCAGTCAATTCCTCAGGGCTAATATGGCACTGTGGGCTTCTTTGTTGCCAAGAGAGAGACCACAGGCTGTCT
i macFas5.chr8                 C 0 I 1
s chlSab2.chr2                 52417267 227 +  90373283 GGCACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCGTGGCATGCACAAGCCTCAGTGCAACAATTGTCTTACAAATGGAGCCGTATAGTGGAGAGGAGTAGCAGGCTCAGGAGCAGGGTGTGCACTGCCTTTAGGGCTCCAGTCAATTCCCCAGGGCTCAGATGGCACTGCGGGCTTCTTTGTTGTCAAGAGGCAGACCACAGGCCGTCT
i chlSab2.chr2                 I 383 I 6375
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=107843.000000
s hg38.chr14_GL000009v2_random    85553 81 +    201709 G-AGGAGGACTTTATGTTCAAGGGCAGAAAGCAGCCAGGTTTACCACCCAGGGGACTCGGCCTTCTGTGGCCCCGGCCAGAC
s panTro5.chr9                 41768628 81 + 116767853 G-AGGAGGACTTTATGTTCCAGGGCGGAAAGCAGCCAGGATTACCACCCAGGGGACTCGGCCTTCTGTGGCCCTGGCCAGAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96121760 76 - 114479721 TCAGGAGGTCTTTATGT------GCAGAAGGCAGCCAGGATTACCACCCGTGGGACTCGGCCTTTTGTGACCCTGGCCTGAC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1712320 80 +   1849298 TGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCA-GATTACCACCCAGGGGACTCTGCCTTCTGTGGCCCT-GCGAGAC
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1    11803 81 +     14195 -GAGGAGGACTTTCTTCTCAAGTTCAGAAAGCAGCCAGGATTTCCACCCAGGGGCCTAGGCCTTCTGTTACCCTGGCCAGGC
i rheMac8.chrUn_NW_015084737v1 I 1 C 0
s macFas5.chr8                 45010846 81 + 146850525 -GAGGAGGACTTTCTTCTCAAGTTCAGAAAGCAGCCAGGATTTCCACCCAGGGGCCTAGGCCTTCTGTTACCCTGGCCAGGC
i macFas5.chr8                 I 1 C 0
s chlSab2.chr2                 52423869 81 +  90373283 -GAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCAGGATTTCCGCCCAGGGGCCTAGGCCTTCTGTGGCCCCGGCCAGGC
i chlSab2.chr2                 I 6375 C 0
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=304096.000000
s hg38.chr14_GL000009v2_random    85634 286 +    201709 TTAGAATTTGGCTCAAAGCAGGACCAGCTCACTCGGAGTAGTGTGTCAGTAGCTGGGGCCTGTACATGCTAGGCAAGGCTAAGCTGGCTCAAAGAGCAACCAGCTACCACTGCAAGGGTGCTTCTGGAGGAGGTGGAGCAGCCAGCAACCTCAGCTACACAAGGAAGCAGGGATGGCCAGGTTCCCACAGCATGAGTGGCCACCGCCTGATGGCTGATCAAGCAGAGGCCTGAGGAAAAGCAGATGGCAGTTGGGCCCTACCTCTAGGGTAGAAGAACTGATGTAC
s panTro5.chr9                 41768709 286 + 116767853 TTAGAATTTGGCTCAAGGCAGGACCAGCTCACTCGGAGCAGTGTGTCAGTAGCTGGGGCCTGTACATGCTAGGCAACGCTAAGCTGGCTCAAAGAGCAACCAGCCACCACTGCAAGGGTGCTCCTGGAGGAGGTGGAGCAGCCAGCAACCTCAGCTACACAAGGAAGCAGGGATGGCCAGGTTCCCACAGCATGAGTGGCCACCGCCTGATGGCTGATCAAGCAGAGGCCTGAGGAAAAGCAGATGGCACTTGGGCCCTACCTCTAGGATAGAATAACTGATGTAC
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1712400 276 +   1849298 TTAGAATTTGGCC--AAGCAGGACAAGCTCACTC-GAGCAGCGTGTCAGTAGCTGGGGCTTGC---TGCCAGGCAAGGCCAAGCTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGCGCCTAGTGCAGGTGGAGCAGCCACCAACTC--ACCCCTCGAGGAAG-AGGGATGGCCAGGTTCCCACAGCCTGAGTGGCTGCCACCTGATGGCTGATGGAGCAGAGGCCTGAGGAAAAGCAGATGGCAC-TGGGCCCTACCTTTAGGGTAGAAGAAGTGATGTAC
i gorGor5.CYUI01015545v1       C 0 I 15
s rheMac8.chrUn_NW_015084737v1    11884 283 +     14195 GTAGAATTTGGCCCTAAGCAGGACAAGCTCACTCGGAGCAGTACTTTGGTACCTGTGGTCTGTGCATGCCAGACAAGGCCAAGCTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGCCCCTGGAGCAGGTGGAGCAGCCACCAACCTCACCCACTCAAGGAAGCAGGGATGGCCAGATTCCAACAGACTGAGTGACTGCCACCTGATGTCTGGTGGAACAGAGGCATGAGGAAAAGCAGATGGCACTGGGGCCCTACCTCTAGGGTAG---AACTGATGTAC
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45010927 283 + 146850525 GTAGAATTTGGCCCTAAGCAGGACAAGCTCACTCGGAGCAGTACTTTGGTACCTGTGGTCTGTGCATGCCAGACAAGGCCAAGCTGGCTCAAAGAGCAACCAGCCACCTCTGCAAGGGTGCCCCTGGAGCAGGTGGAGCAGCCACCAACCTCACCCACTCAAGGAAGCAGGGATGGCCAGATTCCAACAGACTGAGTGACTGCCACCTGATGTCTGGTGGAACAGAGGCATGAGGAAAAGCAGATGGCACTGGGGCCCTACCTCTAGGGTAG---AACTGATGTAC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52423950 279 +  90373283 TTAGAATTTGGCCTCAGGCAGGACAAACTCACTCAGAGCAGCTCTTTGGTACCTGAGGTCTGTGCATGCCAGGCAAGGCCAAGTTGACTCAAAGAGCAACCAGCCACTTCTGCAAGGGTGCCCCTGGAGCAGGTGGAGCAGCGACCAACCT----CACTCAAGGAAGCAGGGATGGCCAGATTCCAACAGACTGTGTGGCTGCCACCTGATGGCTGATGGAGCAGAGGCCTGAGGAAAAGCAGATGGCACTGGGGCCCTGCATGTAGGGTAG---AACTGATGTAT
i chlSab2.chr2                 C 0 C 0
e panPan2.chr13                96121836   0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=12549.000000
s hg38.chr14_GL000009v2_random    85920 21 +    201709 TCTGACTGGTAGTGAGTGAGG
s panTro5.chr9                 41768995 21 + 116767853 CCTGACCGGTAGCGAGTGAGG
i panTro5.chr9                 C 0 C 0
s rheMac8.chrUn_NW_015084737v1    12167 21 +     14195 CATGAGCGGCATCGAGTAAGG
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45011210 21 + 146850525 CATGAGCGGCATCGAGTAAGG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424229 21 +  90373283 CATGAGCGGCAGTGAATGAGG
i chlSab2.chr2                 C 0 C 0
e panPan2.chr13                96121836  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I
e gorGor5.CYUI01015545v1        1712676 15 +   1849298 I

a score=87201.000000
s hg38.chr14_GL000009v2_random    85941 91 +    201709 TTGGTGGTGGGTCCACCGGCTCCTGGCACACCCTTGCAGAGGAGGCTGTTTGCTCTTTAAGGCAGCTTGGCCTTGCCTGGCATGCACAGGC
s panTro5.chr9                 41769016 91 + 116767853 TTGGTGGTGGGTCCACCGGCTCCTGGCACACCCTTGCAGAGGAGGCTGTTTGCTCTTTAAGCCAGCTTGGCCTTGCTTGGCATGCACAGGC
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1712691 89 +   1849298 TTGGTGCT-GGTCCACCTGCTCCT-GCACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAAGC
i gorGor5.CYUI01015545v1       I 15 I 508
s rheMac8.chrUn_NW_015084737v1    12188 79 +     14195 TTGGTGGCTGGTCCACCGGCTCCTGGCACACCCTTGCAGTGGTGGCTGGTTGCTCTTTCAGCAAGTTTGGCCTTGCCTG------------
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45011231 79 + 146850525 TTGGTGGCTGGTCCACCGGCTCCTGGCACACCCTTGCAGTGGTGGCTGGTTGCTCTTTCAGCAAGTTTGGCCTTGCCTG------------
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424250 91 +  90373283 TTGGTTGCTCGTCCACCGGCTCCTGGCACAGCCTTGCAGAGGTGGCTCGTTACTCTTTGAGCCAGCTTGGCCTTGCCTGGTATGCACAAAC
i chlSab2.chr2                 C 0 C 0
e panPan2.chr13                96121836  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=1045.000000
s hg38.chr14_GL000009v2_random    86032 5 +    201709 CCCAG
s panTro5.chr9                 41769107 5 + 116767853 CCCAG
i panTro5.chr9                 C 0 C 0
s chlSab2.chr2                 52424341 5 +  90373283 CACAG
i chlSab2.chr2                 C 0 I 15
e rheMac8.chrUn_NW_015084737v1    12267 0 +     14195 C
e macFas5.chr8                 45011310 0 + 146850525 C
e panPan2.chr13                96121836 0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I
e gorGor5.CYUI01015545v1        1712780 508 +   1849298 I

a score=5383.000000
s hg38.chr14_GL000009v2_random    86037 64 +    201709 GTACTGACACGCTGCTCCCAGTGAACTTGTTCTGCCTTGGACCAAATTCTAAGTGGCTTGGAGT
s panTro5.chr9                 41769112 64 + 116767853 GTACAGACACGCTGCTCCCAATGAGCTTGTTCTGCCTTGGACCAAATTCTAAGTGGCTTAGAAT
i panTro5.chr9                 C 0 C 0
e rheMac8.chrUn_NW_015084737v1    12267  0 +     14195 C
e chlSab2.chr2                 52424346 15 +  90373283 I
e macFas5.chr8                 45011310  0 + 146850525 C
e panPan2.chr13                96121836  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I
e gorGor5.CYUI01015545v1        1712780 508 +   1849298 I

a score=25595.000000
s hg38.chr14_GL000009v2_random    86101 39 +    201709 TTGCCCAGCATGCACAAGCCTCAGTGTAATAACTGTGCA
s panTro5.chr9                 41769176 39 + 116767853 TTGCCCAGCATGCACAAGCCTCAGTGTAATAACTGTGCA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1713288 39 +   1849298 TTGCCCAGCATGCACAAGCCTCAGTGCAACAACTGTGCT
i gorGor5.CYUI01015545v1       I 508 C 0
s rheMac8.chrUn_NW_015084737v1    12267 32 +     14195 -------GCATGCACAAGCCTCAGTGCAACAATTGTCTT
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45011310 32 + 146850525 -------GCATGCACAAGCCTCAGTGCAACAATTGTCTT
i macFas5.chr8                 C 0 C 0
e chlSab2.chr2                 52424346 15 +  90373283 I
e panPan2.chr13                96121836  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=197234.000000
s hg38.chr14_GL000009v2_random    86140 186 +    201709 ACAAACGGAGCCACATAGACGAAACGAGCAGCAGGCTCAGAAACAGGGTGTGCCCTGCCTTTGGGGCTCCAGTCAATGCCTCATGGTTCCTATGGCACTGCGGGTTTCTTGGTTGCCTAGCTGCAGACCACAGGCTGTCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGTAGTCAGGATTACCA
s panTro5.chr9                 41769215 186 + 116767853 ACAAATGGAGCCACATAGACGAAACGAGCAGCAGGCTCAGAAGCAGGGTGTGCCCTGCCTTTGGGGCTCCAGTCGATGCCTCAGGGCTCCTATGGCACTGCGGGTTTCTTGGTTGCCTAGCTGCAGACCACAGGCTGTCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGTAGTCAGGATTACCA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1713327 183 +   1849298 ACAAATGGAGCCACAGAGAGGAAACAAGCAGCAGGCTCAGGAGCA-GGTGTGTGCTGCCTTTGGGGCTCCAGTCCATGCCTCAGGG-TCGTATGGCACTG-GGGCTTCTTGGTTGCCAAGAGGCAGACCACAGGCCATCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCAGGATTACCA
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1    12299 186 +     14195 ACAAATGGAGCCATATAGAGGAAATGAGCAGCAGGCTCAGGAGCAGGGTGTGCGCTGCCTTTAGGGTTCCAGTCAATTCCTCATGGCACAGATGTCACTGCGGGCTTCTTGGTTGCAAATAGGGAGACCACAGGCCATCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCAGGATTTGAA
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45011342 186 + 146850525 ACACATGGAGCCATATAGAGGAAATGAGCAGCAGGCTCAGGAACAGGGTGTGCGCTGCCTTTAGGGTTCCAGTCAATTCCTCATGGCACAGATGTCACTGCGGGCTTCTTGGTTGCAAATAGGGAGACCACAGGCCATCTTGAGGAACACTTTATGTTCAAGTGCAGAAAGCAGCCAGGATTTGAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424361 186 +  90373283 ACAAATGGAGCCATATAGAGCAAATGAATAGCAAGCTCAGGAGCAGGTTGTGCGCTGCCTTTAGGGCTCCAGTCAATTCCTCAGGGCTCAGATGGCACTGCAGGTTTCTTGATTGCAAATAGGGAGGCTGCAGGCTCTCTTGAGGAGGACTTTATGTTCCAGTGAAGAAAGCTGCCAGGATTTCCA
i chlSab2.chr2                 I 15 C 0
e panPan2.chr13                96121836   0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67690883 5083 -  72422247 I

a score=16128.000000
s hg38.chr14_GL000009v2_random    86326 14 +    201709 TCCAGGGGACTCTG
s panTro5.chr9                 41769401 14 + 116767853 TCCAGGGGACTCTG
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1713510 12 +   1849298 -CCAGGGGACTC-G
i gorGor5.CYUI01015545v1       C 0 C 0
s ponAbe2.chrUn                67695966 14 -  72422247 CCCAGGGTACTCAG
i ponAbe2.chrUn                I 5083 I 15142
s rheMac8.chrUn_NW_015084737v1    12485 14 +     14195 CCCAAGGCACTTGG
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45011528 14 + 146850525 CCCAAGGCACTTGG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424547 14 +  90373283 CCCAGGGGACTCGG
i chlSab2.chr2                 C 0 C 0
e panPan2.chr13                96121836  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=23166.000000
s hg38.chr14_GL000009v2_random    86340 21 +    201709 CCTTCTGTGGTCCTCTCCAGA
s panTro5.chr9                 41769415 21 + 116767853 CCTTCTGCGGTCCTCTCCAGA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1713522 21 +   1849298 CCTTCTGTGGCCCTGGCCAGA
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1    12499 21 +     14195 TCTTCTGTGGCCCTAGCCAGA
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45011542 21 + 146850525 TCTTCTGTGGCCCTAGCCAGA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424561 21 +  90373283 CTTTCTGTGGCCCTGGCCAGA
i chlSab2.chr2                 C 0 C 0
e panPan2.chr13                96121836  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67695980 15142 -  72422247 I

a score=-645.000000
s hg38.chr14_GL000009v2_random    86361 2 +    201709 -CT
s panTro5.chr9                 41769436 2 + 116767853 -CT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1713543 2 +   1849298 -CT
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1    12520 2 +     14195 -CT
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45011563 2 + 146850525 -CT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424582 2 +  90373283 -GT
i chlSab2.chr2                 C 0 C 0
s tarSyr2.KE950887v1               7779 2 +    234517 AC-
i tarSyr2.KE950887v1           N 0 N 0
e panPan2.chr13                96121836 0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67695980 15142 -  72422247 I

a score=910.000000
s hg38.chr14_GL000009v2_random    86363 1 +    201709 T
s panTro5.chr9                 41769438 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s rheMac8.chrUn_NW_015084737v1    12522 1 +     14195 T
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45011565 1 + 146850525 T
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424584 1 +  90373283 T
i chlSab2.chr2                 C 0 C 0
e panPan2.chr13                96121836 0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67695980 15142 -  72422247 I
e gorGor5.CYUI01015545v1        1713545 0 +   1849298 C

a score=148069.000000
s hg38.chr14_GL000009v2_random    86364 89 +    201709 AGAATTTGGCCCAAGGCAGGACAAGCTGACTCGGAGCAGAGTGTCAGTACCTGGGGCCTATGCATGCCAGGCAAGGCCAAGCTGGCTC--A
s panTro5.chr9                 41769439 89 + 116767853 AGAATTTGGCCCAAGGCAGGACAAGCTGACTCGGAGCAGAGTGTCAGTACCTGGGGCCTATGCATGCCAGGCAAGGCCAAACTGGCTC--A
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96121836 91 - 114479721 AGAGTTTGGTCCAAGGCAGGACAAGCTCACTCAGAGCAACGTGTCAGTACCTGGGGCCTGTGCATGCCAGTCAAGGCCAAGCTGGCTCAAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1713545 90 +   1849298 AGAATTTGG-CCAAGGCAGGACAAGCTCACTCGGAGCAGCGTGTCAGTAGCTGGGGCCTGTGCATGCCAGGCAAGGCCAAGCTGGCTCAAA
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1    12523 91 +     14195 AGAATTTGGCCCAAGGCAGGACAAGCTCACTCGGAGCAGAATGTTGGTAGCTGGGGTCTGTGCATGCCAGGCAAGGCCAAGCTGACTCAAA
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45011566 91 + 146850525 AGAATTTGGCCCAAGGCAGGACAAGCTCACTCGGAGCAGAATGTTGGTAGCTGGGGTCTGTGCATGCCAGGCAAGGCCAAGCTGACTCAAA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424585 91 +  90373283 ACAATTTGGCCCCATGCAGGACTAGCTCACTCAGAGCAGAATGTCAGTAGCTGGGGTCTGTGCATGCCAGGCAAGGCCAAGCTGGCTCAAA
i chlSab2.chr2                 C 0 C 0
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67695980 15142 -  72422247 I

a score=13735.000000
s hg38.chr14_GL000009v2_random    86453 6 +    201709 GAGCAA
s panTro5.chr9                 41769528 6 + 116767853 GAGCAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96121927 6 - 114479721 GAGCAA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1713635 6 +   1849298 GAGCAA
i gorGor5.CYUI01015545v1       C 0 C 0
s ponAbe2.chrUn                67711122 6 -  72422247 GAGCAA
i ponAbe2.chrUn                I 15142 I 1090
s rheMac8.chrUn_NW_015084737v1    12614 6 +     14195 GAGCAG
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45011657 6 + 146850525 GAGCAG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424676 6 +  90373283 GGGCAA
i chlSab2.chr2                 C 0 C 0
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=141701.000000
s hg38.chr14_GL000009v2_random    86459 106 +    201709 CCAGCCACCTCTGCAAGGCTGTGCCTGTAGCAGGCGGACAAGCCAGCAACCTCACCCGCTCAAGGAAGCACGGATGGCGAGGTTCCAACAGCATGAGTGGCTGCCA
s panTro5.chr9                 41769534 106 + 116767853 CCAGCCACCTCTGCAAGGCTGTGCCTGTAGCAGGCGGACAAGCCAGCAACCTCACCTACTCAAGGAAGCCCCGATGGCCAGGTTCCAACAGCATGAGTAGCTGCCA
i panTro5.chr9                 C 0 I 638
s panPan2.chr13                96121933 106 - 114479721 CCAGCCACCTCTGCAAGGGTGTGCCTGGAGCAGGTGGAGGAGCCACCAACCTCACCCACTCAAGGAAGCCCAGATGGCCAGGTTCCAACAGCATGAGTGGCTGCCA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1713641 101 +   1849298 CCAGCCACCTCTGCAAGGGTGCGCCTAGAGCAGGTGGAGCAGCCAGC-ACCTCAGCCAC-CAAGGAAG-AGGGATGGCCA-GTTCCCACAGCCTGA-TGGCTGCCA
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1    12620 106 +     14195 CCAGCCATCTCTGCAAGGGTGCACCTGTAGCAGCTGGACCAGCTGACAACCTCACCCACTTGAGGAAGCAGAGATGGCCAGATTCTAACAGCCTGAGTGGCTGCTG
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45011663 106 + 146850525 CCAGCCATCTCTGCAAGGGCGCACCTGTAGCAGCTGGACCAGCTGACAACCTCACCCACTTAAGGAAGCAGAGATGGCCAGATTCTAACAGCCTGAGTGGCTGCTG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424682 106 +  90373283 ACAACCACCTCTGCAATGGTGTGCCTGTAGCAGTTGGACCAGCCGACAACGTCATCCACTGAAGGAAGCAGGgatggccaggttcctgcagcctgaatggctgcct
i chlSab2.chr2                 C 0 C 0
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67711128 1090 -  72422247 I

a score=74487.000000
s hg38.chr14_GL000009v2_random    86565 44 +    201709 CCTGATGCCTGATGGAGCAGAGGCCTGAGGAAAAGCaggtggca
s panTro5.chr9                 41770278 44 + 116767853 CCTGATGGCTGATGGAGCAGAGGCCTGAGGAAAAGCAggtggta
i panTro5.chr9                 I 638 C 0
s panPan2.chr13                96122039 44 - 114479721 CCTTATGACTGATGGAGCAGAGTCCTGAGGAAAAGCAGATGGCA
i panPan2.chr13                C 0 I 3
s gorGor5.CYUI01015545v1        1713742 44 +   1849298 CCTAATGGCTGATGGAGCAGAGGCCTGAGGAAAAGCAGATGGCA
i gorGor5.CYUI01015545v1       C 0 I 4
s rheMac8.chrUn_NW_015084737v1    12726 44 +     14195 CCCGGTGGCTGATGGAGCAGAGTCCTGAGGAAAAGCAGATGGCA
i rheMac8.chrUn_NW_015084737v1 C 0 I 50
s macFas5.chr8                 45011769 44 + 146850525 CCCGGTGGCTGATGGAGCAGAGTCCTGAGGAAAAGCAGATGGCA
i macFas5.chr8                 C 0 I 4
s chlSab2.chr2                 52424788 44 +  90373283 cctgatggctgatgcAGCATAGGCCTGAGGAAAAGCGGATGGCA
i chlSab2.chr2                 C 0 N 0
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67711128 1090 -  72422247 I

a score=6923.000000
s hg38.chr14_GL000009v2_random    86609 35 +    201709 tatttaactctttaatcaatcttaagttatttttt
s panTro5.chr9                 41770322 35 + 116767853 tatttaactatttaatccatcttaagttaattttt
i panTro5.chr9                 C 0 C 0
s chlSab2.chr2                 52608184 35 +  90373283 TGTTTAACTCTTTAATCCAACTACAGTTAATTTTT
i chlSab2.chr2                 N 0 C 0
e rheMac8.chrUn_NW_015084737v1    12770 50 +     14195 I
e macFas5.chr8                 45011813  4 + 146850525 I
e panPan2.chr13                96122083  3 - 114479721 I
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67711128 1090 -  72422247 I
e gorGor5.CYUI01015545v1        1713786  4 +   1849298 I

a score=220.000000
s hg38.chr14_GL000009v2_random    86644 2 +    201709 gt
s panTro5.chr9                 41770357 2 + 116767853 at
i panTro5.chr9                 C 0 C 0
s chlSab2.chr2                 52608219 2 +  90373283 CT
i chlSab2.chr2                 C 0 C 0
s rhiBie1.NW_016803399v1          22838 2 +   1162320 gt
i rhiBie1.NW_016803399v1       N 0 N 0
e rheMac8.chrUn_NW_015084737v1    12770 50 +     14195 I
e macFas5.chr8                 45011813 4 + 146850525 I
e panPan2.chr13                96122083 3 - 114479721 I
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67711128 1090 -  72422247 I
e gorGor5.CYUI01015545v1        1713786 4 +   1849298 I

a score=36554.000000
s hg38.chr14_GL000009v2_random    86646 143 +    201709 ataaagcagatggcactagtccatgcctcatggctcatatggcACTGCGGGCCACAGAAGGGCGAGTACCCAGGGTGGTAATCCTGCCTGCTTTCTGCACTTGAACATAAAGTCCTCCTCAAGATGGCCTGTGGTCTGCCTCT
s panTro5.chr9                 41770359 143 + 116767853 atgaagCAGATGGCACCAGTCCATGCCTCAGGGCTCATATGGCACTGTGGGCCACAGAAGGGCGAGTACCCAGGGTGGTAATCCTGCCTGCTTTCTGCACTTGAACATAAAGTCCTCCTCAAGACGACCTGTGGTCGGCCTCT
i panTro5.chr9                 C 0 C 0
s chlSab2.chr2                 52608221 143 +  90373283 ATAAAGCAGATGGCACCAGTCCATGCCTCAGGGCTAGTATGGCACTGTGGGCCACAGAAGGCTGAGTCCCCAGGGTGGTAATCCTGCCTGCTTTCTGCACTTGAACATAAAGTCCTCCTCAAGACAGCCTGTGGTCTCCCTCT
i chlSab2.chr2                 C 0 C 0
e rheMac8.chrUn_NW_015084737v1    12770  50 +     14195 I
e macFas5.chr8                 45011813   4 + 146850525 I
e panPan2.chr13                96122083   3 - 114479721 I
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67711128 1090 -  72422247 I
e gorGor5.CYUI01015545v1        1713786   4 +   1849298 I

a score=546.000000
s hg38.chr14_GL000009v2_random    86789 1 +    201709 T
s panTro5.chr9                 41770502 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96122086 1 - 114479721 T
i panPan2.chr13                I 3 C 0
s chlSab2.chr2                 52608364 1 +  90373283 T
i chlSab2.chr2                 C 0 C 0
e rheMac8.chrUn_NW_015084737v1    12770 50 +     14195 I
e macFas5.chr8                 45011813 4 + 146850525 I
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67711128 1090 -  72422247 I
e gorGor5.CYUI01015545v1        1713786 4 +   1849298 I

a score=23906.000000
s hg38.chr14_GL000009v2_random    86790 20 +    201709 GGCCCCACCTTTAGGGTAGA
s panTro5.chr9                 41770503 20 + 116767853 GGCCCCACCTTTAGGGTAGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96122087 20 - 114479721 GGCCCTAACTCTAGGGCAGA
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1713790 20 +   1849298 GGCCCTACCTTTAGGGTAGA
i gorGor5.CYUI01015545v1       I 4 C 0
s macFas5.chr8                 45011817 20 + 146850525 GGCCCTACCTCTAGGGTAGA
i macFas5.chr8                 I 4 C 0
s chlSab2.chr2                 52608365 20 +  90373283 GGCCCTACCTTTAGGATGGA
i chlSab2.chr2                 C 0 N 0
e rheMac8.chrUn_NW_015084737v1    12770 50 +     14195 I
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67711128 1090 -  72422247 I

a score=9255.000000
s hg38.chr14_GL000009v2_random    86810 20 +    201709 AGAACTGATGTACCACGTCT
s panTro5.chr9                 41770523 20 + 116767853 AGATCTGATGTACCACGTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96122107 20 - 114479721 AGAACTGATGTACCCTGACT
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1713810 18 +   1849298 AGAAGTGATGTACCATGT--
i gorGor5.CYUI01015545v1       C 0 C 0
s macFas5.chr8                 45011837 20 + 146850525 AGAAATGGTGTACCCTGAGC
i macFas5.chr8                 C 0 C 0
e rheMac8.chrUn_NW_015084737v1    12770 50 +     14195 I
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67711128 1090 -  72422247 I

a score=2740.000000
s hg38.chr14_GL000009v2_random    86830 6 +    201709 GGCAGT
s panTro5.chr9                 41770543 6 + 116767853 GGCAGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96122127 6 - 114479721 GGCAGC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1713828 3 +   1849298 -GCA--
i gorGor5.CYUI01015545v1       C 0 C 0
s macFas5.chr8                 45011857 6 + 146850525 AGCATC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424876 6 +  90373283 GGCAGC
i chlSab2.chr2                 N 0 C 0
e rheMac8.chrUn_NW_015084737v1    12770 50 +     14195 I
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67711128 1090 -  72422247 I

a score=117957.000000
s hg38.chr14_GL000009v2_random    86836 74 +    201709 GAGTGAGGTTGGCAGCTGGTCCATCTGCTCCTGGCACACCCTTGCAGAGGTGGCTGCTTGCTCTTTGAGCCAGC
s panTro5.chr9                 41770549 74 + 116767853 GAGTGAGGTTGGCGGCTGGTCCATCTGCTCCTGGCACACTCTTGCAGAGGTGGCTGCTTGCTCTTTGAGCCAGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96122133 73 - 114479721 ATGTGAGGTTGGTGACTGGCCCACTTGCTCCTGGCACACCCCTGCAG-GGTGGCTGGTTGCTCTTTGAGCCAGC
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1713831 71 +   1849298 --GTGAGGTTGGTGGCTGGTCC-CCTGCTCCTGGCACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGC
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1    12820 74 +     14195 GAGTGAGGTTGGTGGCTGGTCTACTGGCTCCTGGCACACCCTTGCAGAAGTGGTTGGTTGCTCTTAGAGCCAGC
i rheMac8.chrUn_NW_015084737v1 I 50 C 0
s macFas5.chr8                 45011863 74 + 146850525 GAGTGAGGTTGGTGGCTGGTCTACTGGCTCCTGGCACACCCTTGCAGAAGTGGTTGGTTGCTCTTAGAGCCAGC
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424882 74 +  90373283 GAGTGAGATTGGTGGCTGGTCCACTGGCTCCTGGCACACACTTGCAGAGGTGGCTGGTTGCCCTTTGCGCCAGC
i chlSab2.chr2                 C 0 C 0
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e ponAbe2.chrUn                67711128 1090 -  72422247 I

a score=156246.000000
s hg38.chr14_GL000009v2_random    86910 80 +    201709 TTGGCCTTGCCTGGCATGCACAAGCCTCACTGCAACAAGTGTGCTACAAATGGAGCCATATAGAGGAAATGATCAGCAGG
s panTro5.chr9                 41770623 80 + 116767853 TTGGCCTTGCCTGGCATGCACAAGCCTCTCTGCAGCAAGTGTGCTACAAATGGAGCCATATAGAGGAAATGATCAGCAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96122206 80 - 114479721 TTGGCCTTGCCTGGAATGCACAAGCCTCGGTGCAACAACCGTTCTACAAATGGAGCCATATATAGGAAAGGAGCAGGAGG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1713902 75 +   1849298 TTGGCCTTGCC-GGCATGCACAAGCCTCAGTGCAACAACTGTGCTACAAAT-GAGCCATATA---GAAATGAGCAGCAGG
i gorGor5.CYUI01015545v1       C 0 C 0
s ponAbe2.chrUn                67712218 80 -  72422247 TTGGCCTTGCCTGGCATGCACAAGCTTCACTGCAACAACTGTGCTACAAATGGAGCCATATAGAGGAAACGATCAGCAGG
i ponAbe2.chrUn                I 1090 C 0
s rheMac8.chrUn_NW_015084737v1    12894 80 +     14195 TTGGCCTTGCCTGCCCTGAACAAGCCTCAGTATAATTATTGTCTTACAAATGGAGCCATATAGAGGAAATGAGCAGCAGG
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45011937 80 + 146850525 TTGGCCTTGCCTGCCCTGAACAAGCCTCAGTATAATTATTGTCTTACAAATGGAGCCATATAGAGGAAATGAGCAGCAGG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52424956 80 +  90373283 TTGGCCTTGCCTGGCATGCACAAGCCTCAGTGCAACAATTGTCTTACACATGGAGCCACATAGAGGAAATGAGCAGCAGG
i chlSab2.chr2                 C 0 C 0
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=75125.000000
s hg38.chr14_GL000009v2_random    86990 48 +    201709 CTCAGGAATGGGGCGTGCACTGCCTTTGTGGCTCCAGTCCATGCCTCA
s panTro5.chr9                 41770703 48 + 116767853 CTCAGGAATGGGGCGTGCACTGCCTTTGTGGCTCCAGTCCATGCCTCA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1713977 48 +   1849298 CTCAGGAGCAGGGTGTGCACTGCCTTTGGGGCTCCAGTCCATGCCTCA
i gorGor5.CYUI01015545v1       C 0 C 0
s ponAbe2.chrUn                67712298 48 -  72422247 CTCAGGAGCAGGGTGTGGAATGTGTTTGGAGCTCCAGTCCATGCCTCA
i ponAbe2.chrUn                C 0 N 0
s rheMac8.chrUn_NW_015084737v1    12974 48 +     14195 CTCAGGAGCGGGGTGTGCACTGCCTTGAGGGCTCCAGTCCATTCCTCA
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45012017 48 + 146850525 CTCAGGAGCGGGGTGTGCACTGCCTTGAGGGCTCCAGTCCATTCCTCA
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52425036 48 +  90373283 CTCAGGAGCGGGGTTTGCACTGCCTTTAGGGTTCCAGTCAATTCCTCA
i chlSab2.chr2                 C 0 C 0
e panPan2.chr13                96122286  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=214896.000000
s hg38.chr14_GL000009v2_random    87038 198 +    201709 GGGCTCGTATGGCACTGTAGGTTTCTTGGTCGCCAACAGGCAGACCACAGGCTTTCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCAAGATTAGCACCCAGGGGACTGGGCCTTCTGTGGCCCTGGCCAGACTTAGAATTTGACCCAAGGCAGGACAAGCTGACTCGGAGCAGAGTGTCAGTACCTGGGGC
s panTro5.chr9                 41770751 198 + 116767853 GGGCTCGTATGGCACTGTAGGCTTCTTGGTCGCCAAGAGGCAGACCACAGGCTGTCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCAAGATTAGCACCCAGGGGACTGGGCCTTCTGTGGCCCTGGCCAGACTTATAATTTGACCCAAGGTAGGACAAGCTGACTCGGAGCAGAGTGTCAGTACCTGGGGC
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1714025 190 +   1849298 -GGCTCATATG---CTCTGGGGCTTCTTGTTGCCAAGAGGCAGACCACAGGCCATCTTGAGGAGGACTTTATGTTC-AGTGCAGAAAGCAGCCAGGATTACCACCCAGGGGACTCTGCCTTCTGTGGCCCTGGCCAGACTTAGAATTTGGCC--AAGCAGGACAA-CTCACTCGGAGCAGCGTGTCAGTAGCTGAGGC
i gorGor5.CYUI01015545v1       C 0 I 15
s rheMac8.chrUn_NW_015084737v1    13022 198 +     14195 GGGCTCAGATGGCACTGCAGGATTCTTGGTTGCAAAGAGGGAGACCACAGGCCATCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCAGGATTTGAACCCAAGGGACTCGGTCTTCTGTGGCCCTAGCCAGACTTAGAATTTGGCCCAAGGCAGGACAAGCTCACTCGGAGCAGAATGTCCGTAGCTGGGGT
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45012065 198 + 146850525 GGGCTCAGATGGCACTGCAGGATTCTTGGTTGCAAAGAGGGAGACCACAGGCCATCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCAGGATTTGAACCCAAGGGACTCGGTCTTCTGTGGCCCTAGCCAGACTTAGAATTTGGCCCAAGGCAGGACAAGCTCACTCGGAGCAGAATGTCCGTAGCTGGGGT
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52425084 191 +  90373283 GGGCTCAGATGGCAC-------TTCTTTGTTGCCAAGAGGCAGACGACAGGCCGTCTTAAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCAGGATTTAAACCCAAGAGACTCGGTCTTCTGTGGCCCTGGCCAGACTTAGAATTTGGCCCAAGGCAGGTCAAGCTCACTCGGAGCAACATGTCGGTACCTGGAAT
i chlSab2.chr2                 C 0 C 0
e panPan2.chr13                96122286   0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=3205.000000
s hg38.chr14_GL000009v2_random    87236 5 +    201709 CTAGG
s panTro5.chr9                 41770949 5 + 116767853 CTATG
i panTro5.chr9                 C 0 C 0
s rheMac8.chrUn_NW_015084737v1    13220 5 +     14195 CTGTG
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45012263 5 + 146850525 CTGTG
i macFas5.chr8                 C 0 I 817
s chlSab2.chr2                 52425275 5 +  90373283 CTGTG
i chlSab2.chr2                 C 0 C 0
e panPan2.chr13                96122286 0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e gorGor5.CYUI01015545v1        1714215 15 +   1849298 I

a score=8962.000000
s hg38.chr14_GL000009v2_random    87241 13 +    201709 CA-TGCCAGGAAAG
s panTro5.chr9                 41770954 13 + 116767853 CA-TGCCAGGCAAG
i panTro5.chr9                 C 0 C 0
s rheMac8.chrUn_NW_015084737v1    13225 14 +     14195 CATTGCCAAGCGAG
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45013085 13 + 146850525 CA-TGCCAGGCAAG
i macFas5.chr8                 I 817 C 0
s chlSab2.chr2                 52425280 13 +  90373283 CA-TGCCAGGCAAG
i chlSab2.chr2                 C 0 C 0
e panPan2.chr13                96122286  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e gorGor5.CYUI01015545v1        1714215 15 +   1849298 I

a score=17650.000000
s hg38.chr14_GL000009v2_random    87254 13 +    201709 GCCAAGCTGGCTC
s panTro5.chr9                 41770967 13 + 116767853 GCCAAGCTGGCTC
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1714230 13 +   1849298 GCCAAGCTGGCTC
i gorGor5.CYUI01015545v1       I 15 I 2
s rheMac8.chrUn_NW_015084737v1    13239 13 +     14195 GCCAAGCTGACTC
i rheMac8.chrUn_NW_015084737v1 C 0 I 2
s macFas5.chr8                 45013098 13 + 146850525 GCCAAGTTGGCTC
i macFas5.chr8                 C 0 I 2
s chlSab2.chr2                 52425293 13 +  90373283 GCCAAGCTGGCTC
i chlSab2.chr2                 C 0 I 1543
e panPan2.chr13                96122286  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=38034.000000
s hg38.chr14_GL000009v2_random    87267 35 +    201709 AGAGCAACTAGCCACATCTGCAAGGCTGTGCCTGT
s panTro5.chr9                 41770980 35 + 116767853 AGAGCAACTAGCCACATCTGCAAGGCTGTGCCTGT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1714245 34 +   1849298 AGAGCAACCAGCCACCTCTGCAAGGGTG-GCCTGG
i gorGor5.CYUI01015545v1       I 2 C 0
s rheMac8.chrUn_NW_015084737v1    13254 35 +     14195 AGAGCAACCAGCCACCTCTGCAAGGGTGCGCCTGT
i rheMac8.chrUn_NW_015084737v1 I 2 I 180
s macFas5.chr8                 45013113 35 + 146850525 AGAGCAACCAGCCACCTCTGCAAGGGTGCCCCTGG
i macFas5.chr8                 I 2 C 0
s chlSab2.chr2                 52426849 35 +  90373283 AGAGCAACCAGCCACCTCTGCAAGGGTTCCCCTGG
i chlSab2.chr2                 I 1543 C 0
e panPan2.chr13                96122286  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=153143.000000
s hg38.chr14_GL000009v2_random    87302 134 +    201709 AGTAGGCGGACAAGCCAGCAACCTCAGCTACTCAAGGAAGGAGGGATGGCCAGGTTCCCACAGCCTGAGTGGTTGCCGCCTGATGACTGATAGAGCAGAGGCCTGAGGAAAAGCATATGGCACTGGGGCCCTAC
s panTro5.chr9                 41771015 134 + 116767853 AGCAGGCGGACAAGCCAGCAACCTCAGCTACTCAAGGAAGGAGGGATGGCCAGGTTCCCACAGCCTGAATGGTTGCCGCCTGATGACTGATAGAGCAGAAGCCTGAGGAAAAGCATATGTCACTGGGGCCCTAC
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1714279 133 +   1849298 AGCAGGTGGAGCAGCCACCAA-CTCACCTACTCAAGGAAGCAGGGATGGCCAGATTCCAACAGCCTGAGTGGCTGCCTCCTGATGGCTGATGGAGCAGAGGCCTGAGGAAAAGCAGATGGCACTGGGACTCTAC
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1    13469 134 +     14195 AGCAGGTGGAGCAGCCACCAATCTCACCCACTCAAGGAAGCACGGATGGCCAGATTCCAACATACTGAGTGGCTGCCACCTGATGGCTGATGGAGCAGAGGCCTGAGCAAACGTAGATGGCACTGGGGCCCTAC
i rheMac8.chrUn_NW_015084737v1 I 180 C 0
s macFas5.chr8                 45013148 134 + 146850525 AGCAGGTGGAGCAGCCACCAACCTCACTCACTCAAGGAAGCAGGGATGGCCAAATTCCAACAGCCTGAGTGGCTGCCCCCTGATGGCTGAAGGAGCAGAGGTCTTAGGAAAAGCAGATGGCACTGGGACCCTAC
i macFas5.chr8                 C 0 I 390
s chlSab2.chr2                 52426884 134 +  90373283 AGCAGGTGGAGCAGCCACCAACCTCACCCGCTCAAGGAAGCAGGGATGGCCAGATTCCAACAGCCTGAGTGGCTGCCCCCTGATGGCTGAAGGAGCAGAGGTCTGAGGAAAAGCAGATGGCACTGGGGCCCTAC
i chlSab2.chr2                 C 0 I 390
e panPan2.chr13                96122286   0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=14697.000000
s hg38.chr14_GL000009v2_random    87436 15 +    201709 CTCTAGGGTAGAATA
s panTro5.chr9                 41771149 15 + 116767853 CTCTAGGGTAGAAGA
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1714412 15 +   1849298 ATCTAGGGTAGAAGA
i gorGor5.CYUI01015545v1       C 0 C 0
s rheMac8.chrUn_NW_015084737v1    13603 12 +     14195 CTCTAGGGTA---GA
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45013672 15 + 146850525 CTCTAGGGTAGAGGA
i macFas5.chr8                 I 390 C 0
s chlSab2.chr2                 52427408 15 +  90373283 CTCTAGGGTAGAGGA
i chlSab2.chr2                 I 390 C 0
e panPan2.chr13                96122286  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=1911.000000
s hg38.chr14_GL000009v2_random    87451 1 +    201709 A
s panTro5.chr9                 41771164 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1714427 1 +   1849298 A
i gorGor5.CYUI01015545v1       C 0 I 637
s rheMac8.chrUn_NW_015084737v1    13615 1 +     14195 A
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45013687 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52427423 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s tarSyr2.KE948027v1              24932 1 -     53443 A
i tarSyr2.KE948027v1           N 0 C 0
e panPan2.chr13                96122286 0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=20516.000000
s hg38.chr14_GL000009v2_random    87452 29 +    201709 CTGATGTAACCTGACCAGCAGTGAGTGAG
s panTro5.chr9                 41771165 29 + 116767853 CCGATGTGACCTGACCAGCAGCGAGTGAG
i panTro5.chr9                 C 0 C 0
s rheMac8.chrUn_NW_015084737v1    13616 29 +     14195 CTGATGTACCATGAGCGATAGCGAGTGAA
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45013688 29 + 146850525 ATGATATATCCTGACCAGCAGCGAGTGTG
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52427424 29 +  90373283 ATGATATATCCTGACCAGCAGCGAGTGTG
i chlSab2.chr2                 C 0 C 0
s tarSyr2.KE948027v1              24933 23 -     53443 CTGAAGAAACCTG------GGCGAGTGAG
i tarSyr2.KE948027v1           C 0 C 0
e panPan2.chr13                96122286  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I
e gorGor5.CYUI01015545v1        1714428 637 +   1849298 I

a score=781.000000
s hg38.chr14_GL000009v2_random    87481 1 +    201709 G
s panTro5.chr9                 41771194 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1715065 1 +   1849298 G
i gorGor5.CYUI01015545v1       I 637 C 0
s rheMac8.chrUn_NW_015084737v1    13645 1 +     14195 G
i rheMac8.chrUn_NW_015084737v1 C 0 C 0
s macFas5.chr8                 45013717 1 + 146850525 A
i macFas5.chr8                 C 0 C 0
s chlSab2.chr2                 52427453 1 +  90373283 A
i chlSab2.chr2                 C 0 C 0
s tarSyr2.KE948027v1              24956 1 -     53443 G
i tarSyr2.KE948027v1           C 0 N 0
e panPan2.chr13                96122286 0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=107726.000000
s hg38.chr14_GL000009v2_random    87482 93 +    201709 TTGGTGGCCGGTCCACC-GGCTCCTGGCACAACCTTGCAGAGGTGGCTGGTTGCTTTTTGAGCCAGCTTGGCCTTGCCCAGCATGCACAAGTCT
s panTro5.chr9                 41771195 93 + 116767853 TTGGTGGCCGGTCCACC-GGCTCCTGGCACAACCTTGCAGAGGTGGCTACTTGCTTTTTGAGCCAGCTTGGCCTAGCCCGGCATGCACAAGTCT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1715066 93 +   1849298 TTGGTGGCTGGTCCACCTTGCTCCTGGCACACCCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCC-GCATGCACAAGCCT
i gorGor5.CYUI01015545v1       C 0 I 2
s rheMac8.chrUn_NW_015084737v1    13646 93 +     14195 TTGGTGGCTGCTCCAAC-TGCTCCAGAGGCACTCTTGCAGAGGTGGCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCTGGCATGCACAAGCCT
i rheMac8.chrUn_NW_015084737v1 C 0 I 2
s macFas5.chr8                 45013718 93 + 146850525 TTGGTCGCTGGTCCACC-GGCTCCTGGCACATTCTTGCAGAGGTGTCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCCGGCGTGCACAAGCCT
i macFas5.chr8                 C 0 I 809
s chlSab2.chr2                 52427454 93 +  90373283 TTGGTCGCTGGTCCACC-GGCTCCTGGCACATTCTTGCAGAGGTGTCTGGTTGCTCTTTGAGCCAGCTTGGCCTTGCCCAGCATGCACAAGCCT
i chlSab2.chr2                 C 0 I 1172
e panPan2.chr13                96122286  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=54967.000000
s hg38.chr14_GL000009v2_random    87575 52 +    201709 GTGCAACAACTGTGACACAAATGGAGCCACACAGAGAAAATGAGCAGCAGGC
s panTro5.chr9                 41771288 52 + 116767853 GTGCAACAACTGTGACACAAATAGAGCCACACAGAGAAAATGAGCAGCAGGT
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015545v1        1715161 52 +   1849298 GTGCAACAACTGTCCTACAAATGGAGCCACAGAGAGGAAACAAGCAGCAGGC
i gorGor5.CYUI01015545v1       I 2 C 0
s rheMac8.chrUn_NW_015084737v1    13741 52 +     14195 GTGCTACAATTGTCTTACAAATGGCGTCATATTGAGGAAAAGAGCAGCAGGC
i rheMac8.chrUn_NW_015084737v1 I 2 C 0
s macFas5.chr8                 45014620 52 + 146850525 GTGCAACAACTGTCTTACAAATGGAGTCATATAGAGGAAATGAGCAGCAGGC
i macFas5.chr8                 I 809 C 0
s chlSab2.chr2                 52428719 52 +  90373283 GTGCAACAATTGTCTTACAAATGGAGCCACACAGAGAAAAGGAGCAGGAGGC
i chlSab2.chr2                 I 1172 C 0
e panPan2.chr13                96122286  0 - 114479721 C
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=423581.000000
s hg38.chr14_GL000009v2_random    87627 287 +    201709 TCAGGAGCAGGGTGTGTGCTTCCTCGGGGGCTCCAGTCCATGCCTGAGGATTCATATGGCACTGCGGGCTTCTTGGTTGCAAAGAGGTAGACCACAGGCCATCTTCAGGAGGTCTTTATGTGGAAGTGCAGAAAGCAGCCAGGATTACCACCCGTGGGACTCGGCCTTTTGTGGCCCTGGCCTAAC--AGAATTTGGCCCAAGGCAGGACAAGCTCACTCAGAGCAACATTTCGGTACCCGGAGCCTGTGCA-TGCTAGGCAAAGCCAAGCTGGCTCAAAGAGCACCCAG
s panTro5.chr9                 41771340 287 + 116767853 TCAGGAGCAGGGTGTGTGCTTCCTCGGGGGCTCCAGTCCATGCCTGAGGGTTCATATGGCACTGCGGGCTTCTTGGTTGCAAAGAGGTAGACCACACGCCATCTTCAGGAGGTCTTTATGTGGAAGTGCAGAAAACAGCCAGGATTACTACCCGTGGGACTCGGCCTTTTGTGGCCCTGGCCTGAC--AGAATTTGGCCCAAGGCAGGACAAGCTCACTCAGAGCAACATGTCGGTACCTGGGGCCTGTGCA-TGCCAGGCAAGGCCAAGCTGGCTCAAAGAGCACCCAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96122286 288 - 114479721 TCGGGAGCAGGGTATGCGCTGCCTCGGGGGCTCCAGTCCATGCCTCAGGGCTCGTATGGCACTGCGGGCTTCTTGGTTGCAAAGAGGCAGACCACAGGCCATCTTCAGGAGGTCTTTATGTTGAAGTGCAGAAAACAGCCAGGATTACCACCCGTGGGACTCGGCCTTTTGTGGCCCTGGCCTGAC--AGAATTTGGCCCAAGGCAGGACAAGTTCACTCGGAGCAACGTGTCTATACCTGGGGCCTGTGCATTGCCAGTCAAGGCCAAGCTGGCTCAAAGAGCAACCAG
i panPan2.chr13                C 0 C 0
s gorGor5.CYUI01015545v1        1715213 285 +   1849298 TCAGGAGCAGGGTGTGCACTGCCTTTGGGGCTCCAGTCCATGCCTCAGGG-TCATATGGCACTGCGGGCTTCTTGGTTGCCAAGA-GCAGACCACAGGCCATCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCA-GATTACCACCCAGGGGACTCTGCCTTCTGTGGCCCTGGCGAGACTTAGAATTTGG-CCAAGGCAGGACAAGCTCACTCGGAGCAGCGTGTCAGTAGCTGGGGCCTGTGCA-TGCCAGGCAAGGCCAAGCTGGCTCAAAGAGCAACCAG
i gorGor5.CYUI01015545v1       C 0 N 0
s rheMac8.chrUn_NW_015084737v1    13793 288 +     14195 TCAGGAGCCACGTGTAGGCTGCCTTTA-GGCTCCAGTCAATTCCTCAGGGCTCAGATGGCACTGCGGGTTTCTTCATTGCCAAGAGGCAGACCAGAGGCCGTCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCAGGATTTGCGCCCAGGGGCCTAGGCCTTCTGTGGCCCTGGCCAGGCTCAGAATTTGGCCTCAGGCAGGACAAACTCACTCAGAGCAGCACTTTGGTACCTGAGGTCTGTGCA-TGCCAGGCAAGGCCAAGTTGGCTCAAAGAGCAACCAG
i rheMac8.chrUn_NW_015084737v1 C 0 N 0
s macFas5.chr8                 45014672 289 + 146850525 TCAGGAGCAGGGTGTGGGCTGCCTTTAGGGCTCCAGTCAGTTCCTCAGGGCTCAGATGGCACTGCAGGCTTCTTCATTGTGAAGAGGTAGACCACAGGCCGTCTTGAGGAGGACTTTATATTCAAGTGCAGAAAGCAGCCAGGATTTCCACCCAGGGGCCTAGGCCTTCTGTGGCTCTGGCCAGACTTAGAATTTGGCCTCAGGAAGGACAAGCTCACTCAGAGCAGCACTTTGGTACCTACATTCTATGCA-TGCCAGGCAAGGCCAAGCTGTCTCAAAGAGCAACTAG
i macFas5.chr8                 C 0 N 0
s chlSab2.chr2                 52428771 289 +  90373283 TCAGGAGCAGGGTGTGCACTGCCTTTAGGGCTCCAGTCAATTCCTCAGGGCTCAGATGGCACTGTGGGCTTCTTCATTGCCAAGAGGCAGATCACAGGCTGTCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAGCAGCCAGGATTTCCACCCAAGTTCTTAGGATTTCTGTGGCCCTGGCCAGGCGTAAAATTTGGACCCAGGCAGGACAAGTTCACTCAGAGCAGAATGTCCATACCTGGAGTCTGTGCA-TGCCAGGCAAGGCCAAGCTGCCTCAAAGAGCAACCAG
i chlSab2.chr2                 C 0 N 0
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=6502.000000
s hg38.chr14_GL000009v2_random    87914 24 +    201709 AGCATCCATTCTGGTGGAGGAGCC
s panTro5.chr9                 41771627 24 + 116767853 AGCATCCATTCTGGTGGAGGAGCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96122574 24 - 114479721 AGCATCCATTCTGGTGGATGAGCC
i panPan2.chr13                C 0 C 0
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=115230.000000
s hg38.chr14_GL000009v2_random    87938 239 +    201709 AACCACATGGCCAGCTTCTGGGTGAGGGCACAGTGCCACATCTTCCATCACTTTCTGATATATCCCACCAGCACTGAAGAGACAGCCTGGAGAGAGTGCAAGAGGAAGGCTGAGAAGGATGAGATAGTGAGTGCTGGCTTCTTTCTGACCCTCAGCACATCCCCAGGTGGTGACCATCAACCTTTAGGGGTGGGAGAGCAAGATTGATGGCTTCAAATGCTTCCCAAAGAAGATGGACA
s panTro5.chr9                 41771651 238 + 116767853 AACCACATGGCCAGC-TCTGGGTGTGGGCATGGTGCCACATCTTCCATCACTTTCTGATGTATCTCACCAGCACTGAAGAGACAGCCTGGAGAGAGTGCAAGAGGAAGGCTGAGAAGGATGAGATAGTGAGTGCTGGCTTCTTTCTGACCCTCAGCACACCCTCATGTGGTGACCATCAACCTTTAGGGGTGGGAAAGCAAGACTGATGGCTTCAAATGCTTCCCCAAGAAGATGGACA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96122598 239 - 114479721 AACCACATGGCCAGCTTCTGGGTGTGGGCACAGTGCCACATCTTCCATCACTTTCTGATGTATCCCACCAGCACTGAAGAGACAGCCTGGAGAGAGTGCAAGAGGAAGGCTGAGAAGGATGAGATGGTGAGTGCTGGCTTCTTTCTGACCCTCAGCACACCCCCAGGTGGGGACCATCAACCTTTAGGGGTGGGAGAGCAAGATTGATGGCTTCAAATGCTTCCCCAAGAAGATGGACA
i panPan2.chr13                C 0 C 0
s rhiBie1.NW_016839597v1            165 237 -      3427 AACCACACGGCCAGCTTCTGGCTGCGGGCACAGTGCCACATCTTCCATCACTTCCTGATGTGCCCCACCAGTGCTGAAGAGACAGCCTGGAGACAGGGCAAGAGGAAGGCTGAGAAGGATGAGATGGTGAATTCCAGCTTCTTCCTGACCCTGAGCCCACCCCCAG--GATGACCCTCAACCTTTAGGAGTGGGAGAGCAAGATTGACAGCTTCGAGTGATTCACCAAAAAGATGGACA
i rhiBie1.NW_016839597v1       N 0 I 1
e rhiRox1.KN296402v1             558974 27227 -    657959 I

a score=136164.000000
s hg38.chr14_GL000009v2_random    88177 122 +    201709 CAGGCCACTCAGCTCAACCTCACAGCCAATGAGTTGACAAGCAAGCAGATGACAGTGACAG-GCTTTTAGAAAGAGCATCAGAAGGTGGCCAGTTTTTCTTCAGCCTCAGCCAGGCCTTGGAA
s panTro5.chr9                 41771889 122 + 116767853 CAGGCCACTCAGCTCAACCTCACAGCCAATGAGTTGACAAGCAAGCAGATGACAGTGACAG-GCTTTTAGAAAGAGCATCAGAAGGTGGCCAGTTTTTCTTCAGCCTCAGCCAGGCCTTGGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96122837 123 - 114479721 CAGGCCACTCAGCTCAACCTCACAGCCAATGAGTTGACATGCAAGCAGATGACAGTGCAAGCTCTTTTAGAAAGAGCTTCAGAAGGTGGCCAGTTTTTCTTCAGCCTCAGCCAGGCCTTGGAG
i panPan2.chr13                C 0 C 0
s nasLar1.chr13                38488014 119 - 126811233 CAGGGCACTCAGCTCAACTTCACAGCCAGTGAGTTGCCATGCAGGCAGATGATGGTGACAG-GCTTCAAGAAAGAGCATCAGATGGCAGCCAG---TACTTCAGCGTCAGCCAGGCATTGGAG
i nasLar1.chr13                N 0 C 0
s rhiRox1.KN297240v1              28472 119 +     85661 CAGGGCACTCAGCTCAACTTCACAGCCAGTGAGTTGACATGCAGGCAGATGATGGTGACAG-GCTTCAAGAAAGAGCATCAGATGGCAGCCAG---TACTTCAGCGTCAGCCAGGCATTGGAG
i rhiRox1.KN297240v1           T 27227 C 0
s rhiBie1.NW_016839597v1            403 119 -      3427 CAGGACACTCAGCTCAACTTCACAGCCAGTGAGTTGACATGCAAGCAGATGACGGTGACAG-GCTTTAAGAAAGAGCATCAGAAGGCAGCCAG---TTCTTCAGCCTCGGCCAGGTCTTGGAG
i rhiBie1.NW_016839597v1       I 1 C 0

a score=-3162.000000
s hg38.chr14_GL000009v2_random    88299 3 +    201709 -GTT
s panTro5.chr9                 41772011 3 + 116767853 -CTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96122960 3 - 114479721 -CTT
i panPan2.chr13                C 0 C 0
s nasLar1.chr13                38488133 3 - 126811233 -TCG
i nasLar1.chr13                C 0 C 0
s rhiRox1.KN297240v1              28591 3 +     85661 -TCG
i rhiRox1.KN297240v1           C 0 C 0
s rhiBie1.NW_016839597v1            522 3 -      3427 -CTG
i rhiBie1.NW_016839597v1       C 0 C 0
s tarSyr2.KE936258v1             125801 3 +    277535 GTC-
i tarSyr2.KE936258v1           N 0 N 0

a score=63369.000000
s hg38.chr14_GL000009v2_random    88302 59 +    201709 GACTAGGCCATCCACTTCACCAGAGATGCCTTCAAGAACATCAGTAAGCTCCTTGCCGG
s panTro5.chr9                 41772014 59 + 116767853 GACTAGGCCATCCACTTCACCAGAGATGCCTTCAAGAACATCAGTGAGCTCTTTGCCAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96122963 59 - 114479721 GACTAGGCCATCCACTTCAGCAGAGATGCCTTCAAGAACATCAGTGAGCTCTTTGCCAA
i panPan2.chr13                C 0 C 0
s nasLar1.chr13                38488136 59 - 126811233 GACCAGGCCATCCACTTCACCGTAGAGGCCTTCCACACTGTCAGTGAGCTCTTTGCCAG
i nasLar1.chr13                C 0 C 0
s rhiRox1.KN297240v1              28594 59 +     85661 GACCAGGCCATCCACTTCACCATAGAGGCCTTCCACACTGTCAGTGAGCTCTTTGCCAG
i rhiRox1.KN297240v1           C 0 N 0
s rhiBie1.NW_016839597v1            525 58 -      3427 GAACAGGCCAT-CATTTCACCAGAGATGCCTTCAACACCGTCAGTGAGCTCTTTGCCAA
i rhiBie1.NW_016839597v1       C 0 C 0

a score=220673.000000
s hg38.chr14_GL000009v2_random    88361 278 +    201709 TCAGTCCAGGAAGGACCTGGACCCAGCCATGGACCTGTTAGTGCTGTCTCAGGGACACAAGACAAACATCCTGGACATCATCCACATACACAAGGAAGCTCTTACCAAAGTCACGGAGAACAGACAACATGTGGCAGAAGGGAAGACAGAGGTGCAGAGGCTGATGGCGTCATTATCACAGGAACAGGATTTCTTTGGCCACTTTGGCTGAAATTCACCACTTCCATCCAATTCACTCAAGTGAGAGACTTGAAATCACAGATGGAGCATTTCTTTCA
s panTro5.chr9                 41772073 278 + 116767853 TCAGTCCAGGAAGGACCTGGACCCAGCCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAACATCCTGGACATCATCCTCATACACAAGGAATCTCTTACCAAAGTCACGGAGAACAGGCAACATGTGGCAGAAGGGAAGACAGAGGTGCAGAGGCTGATGGCGTCATTATCACAGGAACAGGATTTCTTTGGCCACTTTGGCTGAAATTCACCACTTCCATCCAATTCACTCAAGTGAGAGACTTGAAATCACAGATGGAGCATTTCTTGCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96123022 278 - 114479721 TCAGTCCAGGAAGGACCTGGACCCAGCCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCAACATCCTGGACATCATCCTCGTACACAAGGAAGCTCTTACCAAAGTCACGGACAACAGGCAACATGTGGCAGAAGGGAAGACAGAGGTACAGAGGCTGATGGCGTCATTATCACAGGAACAGGATTTCTTTGGCCACTTTGGCTGAAATTCACCACTTCCATCCAATTCACTCAAGTGAGAGACTTGAAATCACAGATGGAGCATTTCTTGCA
i panPan2.chr13                C 0 C 0
s nasLar1.chr13                38488195 274 - 126811233 TCAGCCCAGGCAGGACCTGGACCCAGTCATGGACCTGTTAGTGCTGTCTCAGGGACACCAGACCGACATCCTGGACATCATCCACATGCACAAGGACGCTCTTACCAAAGTCACGGAGAGCCGGCAATATGTGGCAGAAGTGAAGACAGAGGTGCAGAGGCTGGTGATGTCAGAATCACAGGAACAGGAGATCTTTGGCCACTTTGGCTGAAATTCACCACTTTCATCCAAT----TCGAGTGAGAGACATGGACTCACAGATGCTGCATTTCTTGCA
i nasLar1.chr13                C 0 N 0
s rhiBie1.NW_016839597v1            583 274 -      3427 TCAACCCAGGCAGGACCTGGACCCAGTCATGGACCTGTTGGGGCTGTCTCAGGGACACCAGGCCAACATCCTAGACATCATCCACATACACAAGGAAGCTTTTACCAATGTCACGAAAAGCAGGCAATGTGGGGCAGAAGGGAAGACAGAGGTGCAGAGGCTGATGACATCAGAATCACAGGAACAGGATTTCTTGGGACACTGTGGCTGAAATTCACCATTTTCATCCAAT----TTGAGTGAGAAACATGGACTCACAGATGCAGCATTTCTTGCA
i rhiBie1.NW_016839597v1       C 0 C 0

a score=301076.000000
s hg38.chr14_GL000009v2_random    88639 633 +    201709  
s panTro5.chr9                 41772351 633 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96123300 634 - 114479721  
i panPan2.chr13                C 0 C 0
s rhiBie1.NW_016839597v1            857 632 -      3427  
i rhiBie1.NW_016839597v1       C 0 I 1

a score=197737.000000
s hg38.chr14_GL000009v2_random    89272 254 +    201709 ctccctactctccgtgatttcctcttgccatgtgagacaattcactctttcattaccttgcacaatgattgaaagatttctgaggccccccagaagaagaag-cactaagcttcctgtccactctgcagaaccatgagccaattaaacctcttttTCAAGATAAATCTTACCAAAAATGGCAAAtgaggactggagcattgctataaatatacctgaaaatgtggaagcaacttcggaactgggtaatgggtaga
s panTro5.chr9                 41772984 254 + 116767853 ctccctactctccgtgatttcctcttgccatgtgagacaattcactctttcattaccttgcacaatgattgaaagatttctgaggccccccagaagcagaag-cactaagcttcctgtccactatgcagaaccatgagccaattagacctcttttTCAAAATAAATCTTACCAAAAATGGCAAAtgaggactggaacattgctataaagatacctgaaaatgtggaagcaactttggaactgggtaatgggtaga
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96123934 254 - 114479721 ctccctactctccgtgatttcctcttgccatgtgagacaatttgctctttcattgcattgtgcaatgattgaaagatttctgagaccccccagaagcagaag-cactgtgcttcctgtccaccctgcagaaccatgagccaattaaacctcttttTCCAAATAAATCATACCAAAAATGGCAAAtgaggactggagctttgctataaagatacctaaaaatgtggaagcagcttcggaactgggtaatgggtaga
i panPan2.chr13                C 0 C 0
s rhiRox1.JABR01073977v1            304 253 +       561 ctccctactctgcatgttttgctcttgccatgttagacaatt--ctctttcttcgccttgcaccaagattgaaagatttctgaggcctcccagaagccgaagccagtgtgcttcctgtccaccctgcagaaccataagccaattaaacctcttttTCAAAATGAATCATACAgaaaatggcaaatgaggatgggagcattgctataaagatacgtgaaaatgtggaagcagctttggaactaggtaatggacaga
i rhiRox1.JABR01073977v1       N 0 N 0
s rhiBie1.NW_016839597v1           1490 253 -      3427 ctccctactctgcatgttttgctcttgccatgtgagacaatt--ctctttcttcgccttgcacgaagattgaaagatttctgaggcctcccagaagcagaagccagtgtgcttcctgtccaccctgcagaaccataagccaattaaacctcttttTCAAAATGAATCATACAgaaaatggcaaatgaggactggagcattgctataaagatacctgaaaatgtggaagcagctttggaactaggtaatggacaga
i rhiBie1.NW_016839597v1       I 1 C 0

a score=276703.000000
s hg38.chr14_GL000009v2_random    89526 576 +    201709  
s panTro5.chr9                 41773238 576 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96124188 575 - 114479721  
i panPan2.chr13                C 0 C 0
s rhiBie1.NW_016839597v1           1743 583 -      3427  
i rhiBie1.NW_016839597v1       C 0 N 0

a score=12509.000000
s hg38.chr14_GL000009v2_random    90102 45 +    201709 agtgagtgagttctcatgagatctagtagtttaaaaggctgtgga
s panTro5.chr9                 41773814 45 + 116767853 aatgagtgagttctcatgagatctagtagtttaaaaggctgtgga
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96124763 45 - 114479721 agtgagtgagttctcatgagatctagtagtttaaaaggctgtgga
i panPan2.chr13                C 0 C 0

a score=38324.000000
s hg38.chr14_GL000009v2_random    90147 84 +    201709 acctctttcctctctctgtcttgttccaacttctgccatatgaaacatgtcattgccgcttggatttccggcgtggttaggagg
s panTro5.chr9                 41773859 84 + 116767853 acctctttcctctctctatcttgttccaacttctgccatatgaaacatgtcattgctgcttggatttccggtgtggctagaagg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96124808 82 - 114479721 acctctttcctctctctgtcttgctccaacttctgccatatgaaacatgtcattgccgcttggatttccggtgtggttAGGA--
i panPan2.chr13                C 0 C 0
s nasLar1.chrUn_JMHX01053040v1        0 84 +       457 acctccttcctctctctgtcttgctcctactcctgccgaatgaagtatctcattgccgcttggccttctggtgtggttagaagg
i nasLar1.chrUn_JMHX01053040v1 N 0 C 0

a score=40087.000000
s hg38.chr14_GL000009v2_random    90231 70 +    201709 ggcctgatcagtgtgggcctggtcagtggaccta--------------ggtcagtgaggactatttagtgggatcatggtcagc
s panTro5.chr9                 41773943 70 + 116767853 ggcctgatcagtgtgggcctggtcagtggaccta--------------ggtcagtgaggactatttagtgggatcgtggtcagc
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96124890 53 - 114479721 --------------GGGCCTGGTCAGTGG---TA--------------GGTCAGTGAGGCCTATTTAGTGGGATCGTGGTCAGC
i panPan2.chr13                C 0 C 0
s papAnu3.chrUn_NW_003937396v1       54 84 +     14839 gtcctgatcagcgtgcacctgctcagtggacctagtcagttgggacttggtcagtgaggcttatttagtggcagcgtggtcagc
i papAnu3.chrUn_NW_003937396v1 N 0 I 44
s nasLar1.chrUn_JMHX01053040v1       84 83 +       457 cctctgatcagagtgggcctggtcagtgga-ctagtcagttgggacttggtcagtgaggcctgtttattgggggcgtggtcagc
i nasLar1.chrUn_JMHX01053040v1 C 0 C 0

a score=9975.000000
s hg38.chr14_GL000009v2_random    90301 18 +    201709 agaggtctgcttagagag
s panTro5.chr9                 41774013 18 + 116767853 aggggtctgcttagagag
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96124943 18 - 114479721 AGGGGTCTGCTTAGAGAG
i panPan2.chr13                C 0 C 0
s nasLar1.chrUn_JMHX01053040v1      167 18 +       457 aggggtctgcttagAGAG
i nasLar1.chrUn_JMHX01053040v1 C 0 N 0
e papAnu3.chrUn_NW_003937396v1      138 44 +     14839 I

a score=6279.000000
s hg38.chr14_GL000009v2_random    90319 29 +    201709 ggtctcattagtgGGGTCTAGTAGTGGGG
s panTro5.chr9                 41774031 29 + 116767853 ggtctcattagtgGGGTCTAGTAGTGGGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96124961 29 - 114479721 GGTCTTATTAGTGGGATCAAGTTTTAGGG
i panPan2.chr13                C 0 C 0
e papAnu3.chrUn_NW_003937396v1      138 44 +     14839 I

a score=600.000000
s hg38.chr14_GL000009v2_random    90348 1 +    201709 G
s panTro5.chr9                 41774060 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96124990 1 - 114479721 G
i panPan2.chr13                C 0 C 0
s papAnu3.chrUn_NW_003937396v1      182 1 +     14839 G
i papAnu3.chrUn_NW_003937396v1 I 44 N 0

a score=159911.000000
s hg38.chr14_GL000009v2_random    90349 601 +    201709  
s panTro5.chr9                 41774061 601 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96124991 598 - 114479721  
i panPan2.chr13                C 0 C 0

a score=8626.000000
s hg38.chr14_GL000009v2_random    90950 28 +    201709 aggccttgtcagtaaggtcct--------ggtc------ggt
s panTro5.chr9                 41774662 38 + 116767853 aggccttgtcagtgaggtcttgtcagtaaggtcct----ggt
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96125589 42 - 114479721 aggccttgtcagtgaggccttgtcagtaaggtcctggtcagt
i panPan2.chr13                C 0 C 0
s papAnu3.chrUn_NW_003900238v1    72761 28 -    119531 aggcttggtcagtaaggtcct--------ggtc------cgt
i papAnu3.chrUn_NW_003900238v1 N 0 I 43

a score=300.000000
s hg38.chr14_GL000009v2_random    90978 1 +    201709 g
s panTro5.chr9                 41774700 1 + 116767853 g
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96125631 1 - 114479721 g
i panPan2.chr13                C 0 C 0
e papAnu3.chrUn_NW_003900238v1    72789 43 -    119531 I

a score=6270.000000
s hg38.chr14_GL000009v2_random    90979 15 +    201709 gagtccttgtcattg
s panTro5.chr9                 41774701 15 + 116767853 gagtccttgtcattg
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96125632 15 - 114479721 gagtccttgtcattg
i panPan2.chr13                C 0 C 0
s papAnu3.chrUn_NW_003900238v1    72832 15 -    119531 gaggcctggtGATTA
i papAnu3.chrUn_NW_003900238v1 I 43 I 329

a score=90010.000000
s hg38.chr14_GL000009v2_random    90994 339 +    201709 TGTGCCCGGCAGTGGGggccttgttagtggggcctggtcatgagggtctaatcagtgagggtgtcatcagggaggacctgatgtgtggggtctggtcagcagggacctggtcaatgTGGGCTGCTGAGCACTGCTTGGATAAGCCAGGTGCAATGTGCATTATTGAAGGCCCTGTGGACAGCTGGGATAGCCCAGTGATGCCCAAGGGCCTAGTCAAAAGTGGACAAAGCACGTGTTTGGATGGACCTGGGAGATCCTGCTCAGAGATTCTGAAAGGACAAAGGTAAAGGAAGAGCCAGAGTGGCTGCAGAGATGGTCACAGTCTATGGGCTGCACAGG
s panTro5.chr9                 41774716 339 + 116767853 TGTGCCTGGCAGTGGGggccttgttagtggggcctcatcatgagagtctaatcagtgagggtgtcatcagggaggacctgatgtacgaggtctggtcagcagggacctggtcaatgTGGGCTGCTGAGCACTGCTTGGATAAGCCAGGTGCAATGTGCATTATTGAAGGCCCTGTGGACAGCTGGGATAGCCCAGTGATGCCCAAGGGCCTAGTCAAAAGTGGACAAAGCACGTGTTTGGATGGACCTGGGAGATCCTGCTCAGAGATTCTGACAGGAAAAAGATAAAGGAAGGGCCAGAGTGGCTGGAGAGATGGTCACAGTCTATGGTCTGCACAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96125647 339 - 114479721 TGTGCCTGGCAGTGGGggccttgttattggggcctggtcatgagggtctaatcagtgagggtgttgtcagggaggacctgatttgcagggtctggtcagcagggacctggtcaatgTGGGCTACTGAGCACTGCTTGGATAAGCCAGGTGCAATGTGCATTATTGAAGGCCCTGTGGACAGCTGGGGTAGCCCAGTGGTGCCCAAGGGCCCAGTCAAAAGTGGACAAAGCATGTGTTTGGATGGACCTGGGAGATCCTGCTCAGAGATTCTGAGAGGACAACGGTAAAGGAAGGGCCAGAGTGGCTGGAGAGATGGTCACAGTCTATGGGCTGCACAGG
i panPan2.chr13                C 0 C 0
e papAnu3.chrUn_NW_003900238v1    72847 329 -    119531 I

a score=1759.000000
s hg38.chr14_GL000009v2_random    91333 4 +    201709 ATGA
s panTro5.chr9                 41775055 4 + 116767853 ATGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96125986 4 - 114479721 ATGG
i panPan2.chr13                C 0 C 0
s papAnu3.chrUn_NW_003900238v1    73176 4 -    119531 ATGA
i papAnu3.chrUn_NW_003900238v1 I 329 I 121

a score=30625.000000
s hg38.chr14_GL000009v2_random    91337 114 +    201709 AGGAGGCCAGGGAACAGGCAGGGTGGGCAGTTGGGGTTCAGGGAGAGGCAGGTGCATGCTGGGAGGTCAGACCCTGTGAGGGCTTTGGGGGCGTCAGGTTGGGTAGGCTCCAGG
s panTro5.chr9                 41775059 114 + 116767853 AGGAGGCCAGGGAACAGGCAAGGTGGGCAGTTGGGGTTCAGGGAGAGGCGGGTGCATGCTGGGAGGTCAGACCCTGTGAGGGCTTTGGGGGCGTCAGGTTGGGTAGGCTCCAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr13                96125990 114 - 114479721 AGGAGGCCAGGTAACAGGCAGGGTGGGCAGTTGGGGTTCAGGGAGAGGCAGGTGCATGCTGGGAGGTCAGACCCTGTGAGGGCTGTGGGGGCATCAGGTGAGGTGGGCTCCAGG
i panPan2.chr13                C 0 N 0
e papAnu3.chrUn_NW_003900238v1    73180 121 -    119531 I

a score=673.000000
s hg38.chr14_GL000009v2_random    91451 7 +    201709 CACTCtc
s panTro5.chr9                 41775173 7 + 116767853 CACTCtc
i panTro5.chr9                 C 0 C 0
e papAnu3.chrUn_NW_003900238v1    73180 121 -    119531 I

a score=273.000000
s hg38.chr14_GL000009v2_random    91458 1 +    201709 a
s panTro5.chr9                 41775180 1 + 116767853 a
i panTro5.chr9                 C 0 C 0
s papAnu3.chrUn_NW_003900238v1    73301 1 -    119531 A
i papAnu3.chrUn_NW_003900238v1 I 121 N 0

a score=100.000000
s hg38.chr14_GL000009v2_random    91459 1 +    201709 c
s panTro5.chr9                 41775181 1 + 116767853 c
i panTro5.chr9                 C 0 C 0

a score=801856.000000
s hg38.chr14_GL000009v2_random    91460 4176 +    201709  
s panTro5.chr9                 41775182 4272 + 116767853  
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000160v1         144416 4105 +    245036  
i gorGor5.CYUI01000160v1       N 0 I 45

a score=1294.000000
s hg38.chr14_GL000009v2_random    95636 30 +    201709 ctgctgcgagggtctaaatgtctgtccctg
s panTro5.chr9                 41779454 30 + 116767853 cccctgctgtggtctgaaagtttgtccctc
i panTro5.chr9                 C 0 I 238
e gorGor5.CYUI01000160v1         148521 45 +    245036 I

a score=2273.000000
s hg38.chr14_GL000009v2_random    95666 35 +    201709 acataacatcccagcacactgctacaaggttttga
s panTro5.chr9                 41779722 35 + 116767853 acatagcattccagaacactgctatgagggtctga
i panTro5.chr9                 I 238 C 0
e gorGor5.CYUI01000160v1         148521 45 +    245036 I

a score=484963.000000
s hg38.chr14_GL000009v2_random    95701 2026 +    201709  
s panTro5.chr9                 41779757 2029 + 116767853  
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000160v1         148566 1977 +    245036  
i gorGor5.CYUI01000160v1       I 45 I 8

a score=1097.000000
s hg38.chr14_GL000009v2_random    97727 13 +    201709 ttatttgtgggat
s panTro5.chr9                 41781786 13 + 116767853 tcatttgtgggat
i panTro5.chr9                 C 0 C 0
e gorGor5.CYUI01000160v1         150543  8 +    245036 I

a score=1206250.000000
s hg38.chr14_GL000009v2_random    97740 4802 +    201709  
s panTro5.chr9                 41781799 4846 + 116767853  
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000160v1         150551 4813 +    245036  
i gorGor5.CYUI01000160v1       I 8 C 0

a score=116715.000000
s hg38.chr14_GL000009v2_random   102542 252 +    201709 Atttttatttttttgagacagagcct---cactctgtcacccaggctggagtgcagtggcactatcttggctcactgcaacctc-gcctcccatgttcaagcaattctcctgactcagtctcccgagtagctgggactacagatgcatgctatcaagcctggctaattttttg-atttttaatagagatgaagtttcaccatgttggccaggctggtctcaaactcctgacctcatgtgatctgcccacctcagcct
s panTro5.chr9                 41786645 253 + 116767853 Atttttatttttttgagacagcgtct---cactctgtcacccaggctggagtccagtggcactatcttggctcactgcaacctctgcctcccatgttcaagcaagtctcctgcctcagtctcctgagtagccgggactacagatgcatgctatcatgcctggctaattttttg-atttttaatagagatgaggtttcaccatgttggccaggctggtctcaaactactgacctcatgtgatctgcccacctcagcct
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01000160v1         155364 253 +    245036 Atttttatttttttgagacagagtct---cactctgtcacccaggctggagcgcagtggcactatcttggctcactgcaacctctgcctcccaggttcaagcaattctcccgcctcaggctcctgagtagctgggactacagatgcatactatcacacctggctaattttttt-atttttaatagagatgggatttcaccatgttggccaggctggtctcaaactcctgacctcatgtgatctgcccacctcagcct
i gorGor5.CYUI01000160v1       C 0 C 0
s calJac3.chr7                 35345827 257 + 155834243 atttttacttttttgagacagagtctcaccactctgtcaccaaggccagagcgccgtggcactatctttgctcactgcaacctcttccctctaggttcaagtgagtttcctgcctcagtctcttaagtagctgggactacggacgcatgccaccacacctggctagttttttgtctttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgaagtcatatgatctgcccatcttggcct
i calJac3.chr7                 N 0 C 0

a score=31016.000000
s hg38.chr14_GL000009v2_random      102794 38 +    201709 cccaaagtgctgggattacaggtgtaagccactgcacc
s panTro5.chr9                    41786898 38 + 116767853 cccaaagtgctgggattacaggtgtaagccactgcacc
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            155617 38 +    245036 cccaaagtgctgggattacaggtgtaagccactacacc
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    77094 38 -    139590 cccagagtactaggattacaggcataagccactgcacc
i nomLeu3.chr21_GL397661_2_random N 0 C 0
s calJac3.chr7                    35346084 38 + 155834243 cccaaagtgctgggattacaggcatgagccaccgcagc
i calJac3.chr7                    C 0 C 0

a score=143784.000000
s hg38.chr14_GL000009v2_random      102832 166 +    201709 tggcAATTTTT---------AAATATATATAATTAAAAATTAATAAAAAACAGGTATTTGCAAGTTTCCATTTTGTTATATGCTTA---------------TTATTCTTTATCTTTATGTCAGGTTGCTGTGTCAATACACTTAGGAGATCATAGTTTCTAAATTGAAATACAAATAAATATGTCTGAAA
s panTro5.chr9                    41786936 160 + 116767853 cggcAATTTTT---------AAATATATATAATTAAAAATTAATAAAAAACAGGTATTTGCAAGTTTCCGTTTTGTTATATGCTTA---------------TTATTCTTTAT------GTCAGGTTGCTGTGTCAATACACTTAGGAGATCATAGTTTCTAAATTGAAATACAAACAAATATGTCTAAAA
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            155655 160 +    245036 cggcAATTTTT---------AAATATATATAATTAAAAATTAATGAAAAACAGGTATTTGCAGGTTTCCGTTTTGGTATATGTTTA---------------TTTATCTTTAT------GTCAGGTTGCTGTGTCAATACACTTAGGAGATCATAGTTTCTAAATTAAAATACATATAAATATGTCTGAAA
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    77132 160 -    139590 cggcaattttt---------AAATATGTAAAATTAAAAATTAATAAAAAACAGGTATTTGCAAGTTTCCGTTTTGGTGTGTGTTTA---------------TTATTCTTTAT------GTCAGGTTGCTGTGTCAATACACTTAGGAGATCATAGTTTCTAAATTGAAATACATACAAATATGTCTGAAA
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35346122 147 + 155834243 cagcaattttt---------aagtatatgtaataaaaaattaataaaaaCCAGATATTTGCAAGTTTCTGATTTGGTATATGTTTA---------------TTATTCTTTAT------GTCAGGTTGCTGTGTCAATACACT-------------TTTCTAAATTGAAATACATATAAATATGTCTGAAA
i calJac3.chr7                    C 0 C 0
s tarSyr2.KE941085v1                 90329 183 -   1133132 TAGCAAATTTTATAGAAAAAAATTATATAATAACAATAATTAGTAACAAATACAATCTGGCAAGTCTGTGACTCAGTACATGTTGATTTTATTGTTAACATTTATCTTTAAT------TCTAGGTTGCTATGTCAATACACTAAGGTGACCAT-GTTTCCAAAACCAAATATGTATCAATATATATAAAA
i tarSyr2.KE941085v1              N 0 I 710

a score=295776.000000
s hg38.chr14_GL000009v2_random      102998 386 +    201709 tttt-ttcttttttc-tttttttttgagacggactctcattctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacatccacctcccagattcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccgccatgacacccagctaacttttatatatttttt-tctatttttagtaaagacagggtttcaccatgttggccagggtggtctccaactcctgacctcagatgatcctcccgcctcgacctcctcaagtgctgggattacaggtgtgagccactgtgcctggccTGGAATTTTTTTCTAAAATTTACATTTCTGAGTTAAGAATGCTTAAAATATTATTAAAACAGAAGCACA
s panTro5.chr9                    41787096 385 + 116767853 tttt-ttcttttttc-tttttttttgagacggactctcattctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctctgcctcccagattcaagtgattctcctgcctcagcctccagagtagctgggattacaggcacccgccacgacacccagctaacttttatatatttttt--ctatttttagtaaagacagggtttcaccatgttggccaggctggtctccaactcctgacttcagatgatcctcccgcctcggcctcctcaagtgctgggattacaggtgtgagccactgtgcctggccTGGAATTTTTTTCTAAAATTTACATTTCTGAGTTAAGAATGCTTAAAATATTATAAAAACAGAAGCACA
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            155815 388 +    245036 tttt-ttctttcttcttttttttttgagatggagtctcactctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctccgcctcccagattcaagtgattgtcctgcctcagcctccacagtagctgggattacaggcatctgccaccacacccagctaacttttatatattttttttctatttttagtaaagacagggtttcaccatattggccaggctggtctctaactcctgacctcagatgatccgcccgcctcggcctcccaaagtgctgggattgcaggtgtgagccactgtgcctggccTGGAATTTTTTTCTAAAGTTTACATTTCTGAGTTAAGAATGCTTAAAATATTATAAAAACAGAAACACA
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    77292 380 -    139590 tttt-ttcttttttc--ttatttttgagacagagtcttactctgccacccaggctggagtgcagtggtgcaatctcagctcactgcaacctcagcctcccagattcaagtgattctcctgcctcagcctccagagtagctgggattacaggagcccacaaccaaacccag----cttttatatttttttt--ctatttttaataaagacagggtttcaccatgttggccaggctgatctccaactcctgacctcagatgatatgcccgcctcggcctcctgaagtactgggattacaggtgtgagccacagtgcctggccTGGAATTTTTTTCTAAAGTTTACATTTCTGAGTTAAGAATGCTTAAAATATTATAAAAACAGAAGCACA
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35346269 369 + 155834243 ttttgttcttttttc---------tgagacaaagtctcactctgtcacccaggctggagtgcagtggtacaatctcagctcactgcaacctccgcctcccaggttcaattgattctcctgcctcaggctccagagtagctgggattacaggtacccaccaccacacccatataacttttgtatttttttg---tatttttagtaaagacaggatt--------ttggtcaggctggtctcaaactcctgacctcaggtgatccacccatctcagcctcccaaagtgctgggattacaggtgtgagccactgctcctggcATGGAATATTTTTCTAAAGTTTACATTTCTGAGTTAAAAATGCTTAAAATATTATAAAAAACAAAGCACA
i calJac3.chr7                    C 0 C 0
e tarSyr2.KE941085v1                 90512 710 -   1133132 I

a score=118754.000000
s hg38.chr14_GL000009v2_random      103384 131 +    201709 ATTCATTATGTGTTTCATTAATTACCTTTATTAAAAACAACacaattatattacaataggac--aaaaaatgtttaagcaaatgaaaacgaaaccatgacatacccaaactcaggaggag----gcaacaaaggcag
s panTro5.chr9                    41787481 129 + 116767853 ATTCATTATGTGTTTCATTAATTACCTTTATTAAA---AACACAATTATattacaataggat-aaaaaaatgtttaagcaaatgaaaacaaaaccatgacatacccaaactcaggaggag----gcaacaaaggcag
i panTro5.chr9                    C 0 I 124
s gorGor5.CYUI01000160v1            156203 132 +    245036 ATTCATTATGTGTTTCATTAATCACCTTTATTAAaaacaacgcaattatattacaataggac-aaaaaaaagtttaagcaaatgaaaacaaaatcatgacatacccaaactcaggaggag----gcaacaaaggcag
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    77672 132 -    139590 ATTCATTATGTGTTTCATTAATCACCTTTATTAAAAACAATGCAATTATattacaataggac-aaaaaaatgtttaagcaaatgaaaacaaaaccatgacatacccaaactcaggaggag----gcaacaaaggcag
i nomLeu3.chr21_GL397661_2_random C 0 I 62
s calJac3.chr7                    35346638 133 + 155834243 ATTCATTATGTGTTTCATTAATCACCTTTGTTAAAAACAATGCAATTATattacaggaagacaaaaaaaatgtttaagcaaatgaaaacaaaaccatgacatacccaaactcacagggag----gcaacaaaagcag
i calJac3.chr7                    C 0 C 0
s tarSyr2.KE941085v1                 91222 124 -   1133132 ATTATTCATATGTTTCATTGATCACCTTTA--AATAAAAACACAATTACATTGTACTGAAAA-AAAAATAACTTT----ACataaacacaaaaatacatcatatgaaaacctatcgggtgcagtgtattaa------
i tarSyr2.KE941085v1              I 710 C 0

a score=51631.000000
s hg38.chr14_GL000009v2_random      103515 53 +    201709 tgctaa-agggaagcttacagctgcagatgcttaaattaaaaagaagaaagatc
s panTro5.chr9                    41787734 53 + 116767853 tgctaa-agggaagcttacagctgcagatgcttaaattaaaaagaagaaagatc
i panTro5.chr9                    I 124 C 0
s gorGor5.CYUI01000160v1            156335 49 +    245036 tgctaa-agggaagcttacagctgcagatgctaaaattaaaaag----aagatc
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    77866 53 -    139590 tgctaa-atggaagcttacagctgcagatgcttaaattaaaaagaagaaagatc
i nomLeu3.chr21_GL397661_2_random I 62 C 0
s calJac3.chr7                    35346771 53 + 155834243 tgctaa-agggaaacttacagctgtaggtgcttaaattaaaaagaagaacaatc
i calJac3.chr7                    C 0 C 0
s tarSyr2.KE941085v1                 91346 54 -   1133132 tactaacctggactcttatagtgggagatgcttaaattacaaaagaaaaaggtc
i tarSyr2.KE941085v1              C 0 N 0

a score=13662.000000
s hg38.chr14_GL000009v2_random      103568 30 +    201709 tcaaacccatgctaaagggaagcttacagc
s panTro5.chr9                    41787787 30 + 116767853 tcaaaccCTTGCtaaagggaagcttacagc
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            156384 30 +    245036 tcaaacccatgctaaagggaagcttacagc
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    77919 29 -    139590 tcaaacccatgctaaa-ggaagcttacagc
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35346824 19 + 155834243 tcaaatca---------gcaatctaaca--
i calJac3.chr7                    C 0 C 0

a score=49893.000000
s hg38.chr14_GL000009v2_random      103598 58 +    201709 tgcagatgcttaaattaaaaagaagaaatatctcaaaccCTtgctaaagggaagctta
s panTro5.chr9                    41787817 58 + 116767853 tgcagatgcttaaattaaaaagaagaaagatctcaaacccatgctaaagggaagctta
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            156414 58 +    245036 tgcagatgcttaaattgaaaagaagagagatctcaaatccatgctaaagggaagctta
i gorGor5.CYUI01000160v1          C 0 C 0
s ponAbe2.chrUn                   67948470 58 -  72422247 tgcagatgcttaaattaaaaagaagaaagatctcaaacccatgctaaagggaagctta
i ponAbe2.chrUn                   N 0 I 8392
s nomLeu3.chr21_GL397661_2_random    77948 58 -    139590 tgcagatgcttaaattaaaaagaagaaagatctcaaacccatgctaaagggaagttta
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35346843 34 + 155834243 ---------ttaaacctgaagggaaaaaaa-------------ctaatggcaaacc--
i calJac3.chr7                    C 0 C 0

a score=442853.000000
s hg38.chr14_GL000009v2_random      103656 648 +    201709  
s panTro5.chr9                    41787875 648 + 116767853  
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            156472 641 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    78006 640 -    139590  
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35346877 546 + 155834243  
i calJac3.chr7                    C 0 I 1958
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=372295.000000
s hg38.chr14_GL000009v2_random      104304 766 +    201709  
s panTro5.chr9                    41788523 789 + 116767853  
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            157113 773 +    245036  
i gorGor5.CYUI01000160v1          C 0 I 13
s nomLeu3.chr21_GL397661_2_random    78646 777 -    139590  
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35347423 1958 + 155834243 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=64258.000000
s hg38.chr14_GL000009v2_random      105070 105 +    201709 aacaaaagaaaagaaatttttaaaaagaatgacatttggccgggtgcagtggttcatgcctgcaatcccagcagtttgggaggctgaggcgggcagatcacctga
s panTro5.chr9                    41789312 105 + 116767853 aacaaaagaaaagaattttttaaaaagaatgacatttggccgggtgtggtggttcatgcctgcaatcccagcagtttgggaggccgaggcgggcagatcacctga
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77755585 105 + 205426864 aacaaaagaaaagaaatttttaaaaagaatgacatttggccaggtgtggtggctcatgcctgcaatcccagcactttgggaggccgaggcgggcagatcacctga
i panPan2.chr3                    N 0 C 0
s gorGor5.CYUI01000160v1            157899 105 +    245036 aacaaaagaaaagaaatttttaaaaagaatgacatttggccaggtatggtggctcatgcctgcaatcccagcactttggaaggccgaggtgggcatatcacctga
i gorGor5.CYUI01000160v1          I 13 C 0
s nomLeu3.chr21_GL397661_2_random    79423  80 -    139590 agcaaaaaaa-------------------------ttagctgggcctggtggtgtgcacctgtgatcccagctacttgagagattgaggttggagaatcgcttga
i nomLeu3.chr21_GL397661_2_random C 0 I 1146
e calJac3.chr7                    35347423 1958 + 155834243 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=21696.000000
s hg38.chr14_GL000009v2_random      105175 44 +    201709 ggtcacaagttcaagacttaccttgtcaacatggagaaaccctg
s panTro5.chr9                    41789417 44 + 116767853 ggtcacaagttcaagactagcctggtcaacatggagaaactctg
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77755690 44 + 205426864 ggtcacaagttcaagactagtctggtcaatatggagaaaccctg
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            158004 44 +    245036 ggtcacaagttcaagactagtctggtcaaaatggagaaaccctg
i gorGor5.CYUI01000160v1          C 0 C 0
e calJac3.chr7                    35347423 1958 + 155834243 I
e nomLeu3.chr21_GL397661_2_random    79503 1146 -    139590 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=637903.000000
s hg38.chr14_GL000009v2_random      105219 831 +    201709  
s panTro5.chr9                    41789461 835 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77755734 830 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            158048 836 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s calJac3.chr7                    35349381 817 + 155834243  
i calJac3.chr7                    I 1958 C 0
e nomLeu3.chr21_GL397661_2_random    79503 1146 -    139590 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=943610.000000
s hg38.chr14_GL000009v2_random      106050 744 +    201709  
s panTro5.chr9                    41790296 744 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77756564 744 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            158884 744 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    80649 741 -    139590  
i nomLeu3.chr21_GL397661_2_random I 1146 C 0
s calJac3.chr7                    35350198 739 + 155834243  
i calJac3.chr7                    C 0 C 0
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=-1395.000000
s hg38.chr14_GL000009v2_random      106794 1 +    201709 -T
s panTro5.chr9                    41791040 1 + 116767853 -T
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77757308 1 + 205426864 -T
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            159628 1 +    245036 -T
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    81390 1 -    139590 -T
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s papAnu3.chrUn_NW_003929611v1      181726 1 +    186294 -T
i papAnu3.chrUn_NW_003929611v1    N 0 I 1577
s calJac3.chr7                    35350937 1 + 155834243 G-
i calJac3.chr7                    C 0 C 0
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=1152777.000000
s hg38.chr14_GL000009v2_random      106795  995 +    201709  
s panTro5.chr9                    41791041 1002 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77757309 1000 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            159629  999 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    81391  943 -    139590  
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35350938  931 + 155834243  
i calJac3.chr7                    C 0 I 2785
e papAnu3.chrUn_NW_003929611v1      181727 1577 +    186294 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=96735.000000
s hg38.chr14_GL000009v2_random      107790 117 +    201709 tccagccatccaactattac--agagacagaataactagtagcaggacctcaaacagatatgtgcacacctaagttcacagcagcattacacagccacaaggtggaagaaaccaaaacg
s panTro5.chr9                    41792043 117 + 116767853 tccagccatccaacttctac--agagacagaataactagtagcaggacctcaaacagatatgtgcacacctatgttcacaggagcattacacagccacaaggtggaagaaaccaaaacg
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77758309 119 + 205426864 tccagccatccaacttctacagagagacagaataactagtagcaggacctcaaacagatatgtgcacacctatgttcacagcagcattacacagccacaaggtggaagaaaccaaaacg
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            160628 119 +    245036 tccagccatccaacttctacagagagacagaataactagtagcaggacctcaaacagatatgtgcacacctatgttcacagcagcattacacagccacaaggtggaagaaaccaaaatg
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    82334 110 -    139590 tccagccatccagcttctacagagagacagaataactagtagcaggacttcagacagatatgtgcac---------cacggcagcattacccagccacaaggtggaagaaaccaaaacg
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35351869 2785 + 155834243 I
e papAnu3.chrUn_NW_003929611v1      181727 1577 +    186294 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=6346.000000
s hg38.chr14_GL000009v2_random      107907 7 +    201709 tccgtcc
s panTro5.chr9                    41792160 7 + 116767853 tccatcc
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77758428 7 + 205426864 tccatcc
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            160747 7 +    245036 tccatcc
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    82444 7 -    139590 actatct
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s papAnu3.chrUn_NW_003929611v1      183304 7 +    186294 tccgtct
i papAnu3.chrUn_NW_003929611v1    I 1577 N 0
e calJac3.chr7                    35351869 2785 + 155834243 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=17374.000000
s hg38.chr14_GL000009v2_random      107914 38 +    201709 agaaataggtggataaacaaaagcatatatatatacat
s panTro5.chr9                    41792167 22 + 116767853 aggaatagatgtataaacaaag----------------
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77758435 28 + 205426864 aggaatggatggataaacaaaaggatat----------
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            160754 38 +    245036 aggaatggatggataaacaaaaggatatatatatatat
i gorGor5.CYUI01000160v1          C 0 I 40
s nomLeu3.chr21_GL397661_2_random    82451 38 -    139590 aggaatggatggataaacaaaaggatatatatatatat
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35351869 2785 + 155834243 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=1219.000000
s hg38.chr14_GL000009v2_random      107952 38 +    201709 ---------------------gatatatatatatatat--tatatatgta--------------------------atatatatata
s panTro5.chr9                    41792189 32 + 116767853 ---------------------gatatatatatatata--------gagag--------------------------agagagagaaa
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77758463 65 + 205426864 ---------------------aatatatatatatatat-gtatatgtgtgtgtgtgtgtgtgtgtgtgtgtaaaatatatgtatata
i panPan2.chr3                    C 0 C 0
s nomLeu3.chr21_GL397661_2_random    82489 66 -    139590 atatatacacacacacacacacacacatatatatacataatatatatgtgtatat---------------------atatatacata
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35351869 2785 + 155834243 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I
e gorGor5.CYUI01000160v1            160792 40 +    245036 I

a score=3968.000000
s hg38.chr14_GL000009v2_random      107990 11 +    201709 at---------atatatatg
s panTro5.chr9                    41792221 11 + 116767853 at---------atatatatg
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77758528 20 + 205426864 atatatatctaatatatatg
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            160832 11 +    245036 ac---------gtacacaca
i gorGor5.CYUI01000160v1          I 40 C 0
s nomLeu3.chr21_GL397661_2_random    82555 11 -    139590 at---------atatatgtg
i nomLeu3.chr21_GL397661_2_random C 0 I 109
e calJac3.chr7                    35351869 2785 + 155834243 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=274168.000000
s hg38.chr14_GL000009v2_random      108001 325 +    201709 aagaaatattattcagccatagaaaggaagaaaatcgtgacacatctgacacataacatggaacctactt-acaaaacaacaaatattatataaccctaggtatataagccaaatttttagaaacacaaagtagaatagtacttgccaggaggtggaaggagggggaaattaatagttgttgaatgggtatagaattttccaagataaaaaaaaaatctagaaatctgctacacagcaccgtaaatattcttaactctacaaaactgtatacctacaactggttacgatggtaaattttaaggtatgtgtttgttacgaaaattCT
s panTro5.chr9                    41792232 323 + 116767853 aagaaatattattcagccatagaaaggaagaaaatcctgacacatcggacacataacatggaacctactt-acaaaacaacaaatattatataaccctaggtatataagccaaatttttagaaacacaaagtagaatagtacttgccaggaggtggaaggaaggggaaattaatagttgttgaatgggtatag--ttttccaagattaaaaaaaaatctagaaatctgctacacaacactgtaaatattcttaactctacaaaactgtatactttcaactggttatgatggtaaattttaaggtttgtgtttgttaccaaaatttg
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77758548 324 + 205426864 aagaaatattattcagccatagaaaggaagaaaatcctgacacatctgacacataacatgaaacctacttaacaaaacaacaaatattatataaccccaggtatataagccaaatttttagaaacacaaagtagaatagtacttgccaggaggtggaaggagggggaaattaatagttgttgaatgggtatagagttttccaagat--aaaaaaaatctagaaatctgctacacaacactgtaaatattcttaactctacaaaactgtatacgtacaactggttatgacggtaaattttaaggtatgtgtttgttaccaaaattCT
i panPan2.chr3                    C 0 I 550
s gorGor5.CYUI01000160v1            160843 323 +    245036 aagaaatgttattcagccatagaaaggaagaaaatcctgacacatctgacacataacatgaaacctacttaacaaaacaacaaatattatataaccccaggtatataagccaaatttttagaaacacaaagtagaatagtacttgccaggaggtggaaagaggggggaattaatagttgttgaatgggtatagagctttccaagat--aaaaaaaatctagaaatctgctacacaacactgtaaatattctt-actctacaaaactgtatacttacaactggttatgatggtaaattttaaggtatgtgtttgtcaccaaaattcg
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    82675 323 -    139590 aagaaatattattcagccatagaaagaaagaaaatcctgacgcatctgacacataacatggaacctactt-acaaaacgacaaatattatataaccccaggtatataagtgaaatttttagaaacacaaagtagaatagtacttgccaggaggtggaaggagggggaaattaatagttgttcaatgggtatagagtcttccaagat--aaaaaaaatctagaaatctgctacacaacactgtaaatattcttaactctacaaaactgtatacttacaactggttatgacggtaaattttaaggtatgtgtttgtcaccaaaattcg
i nomLeu3.chr21_GL397661_2_random I 109 C 0
e calJac3.chr7                    35351869 2785 + 155834243 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=2330898.000000
s hg38.chr14_GL000009v2_random      108326 2846 +    201709  
s panTro5.chr9                    41792555 2847 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77759422 2849 + 205426864  
i panPan2.chr3                    I 550 C 0
s gorGor5.CYUI01000160v1            161166 2851 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    82998 2833 -    139590  
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35351869 2785 + 155834243 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=1365.000000
s hg38.chr14_GL000009v2_random      111172 1 +    201709 T
s panTro5.chr9                    41795402 1 + 116767853 T
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77762271 1 + 205426864 T
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            164017 1 +    245036 T
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    85831 1 -    139590 T
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s tarSyr2.KE941085v1                860254 1 -   1133132 T
i tarSyr2.KE941085v1              N 0 I 383
e calJac3.chr7                    35351869 2785 + 155834243 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=7820.000000
s hg38.chr14_GL000009v2_random      111173 8 +    201709 GTGTGGGC
s panTro5.chr9                    41795403 8 + 116767853 GTGTGGGC
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77762272 8 + 205426864 GTGTGGGC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            164018 8 +    245036 GTGTGGGC
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    85832 8 -    139590 GTGTGGGC
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35351869 2785 + 155834243 I
e tarSyr2.KE941085v1                860255 383 -   1133132 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=20790.000000
s hg38.chr14_GL000009v2_random      111181 46 +    201709 ACAGATGATAGGTCACAACAACCTGATTCAGTCCCCACTGTGGCTG--
s panTro5.chr9                    41795411 46 + 116767853 ACAGATGATAGGTCACAACAACCTGATTCAGTCCCCACTGCGGCTG--
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77762280 46 + 205426864 GCAGATGACAGGCCACCACAGCCTGATTCAGTCCTCACTGTGGCTG--
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            164026 48 +    245036 ACAGATGACAGGCCACCACAACCTCATTCAGTCCTCACTGCGGCTGAG
i gorGor5.CYUI01000160v1          C 0 I 178
e calJac3.chr7                    35351869 2785 + 155834243 I
e nomLeu3.chr21_GL397661_2_random    85840  0 -    139590 C
e tarSyr2.KE941085v1                860255 383 -   1133132 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=-310.000000
s hg38.chr14_GL000009v2_random      111227 1 +    201709 T
s panTro5.chr9                    41795457 1 + 116767853 A
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77762326 1 + 205426864 A
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            164252 1 +    245036 T
i gorGor5.CYUI01000160v1          I 178 C 0
e calJac3.chr7                    35351869 2785 + 155834243 I
e nomLeu3.chr21_GL397661_2_random    85840 0 -    139590 C
e tarSyr2.KE941085v1                860255 383 -   1133132 I
e ponAbe2.chrUn                   67948528 8392 -  72422247 I

a score=1000.000000
s hg38.chr14_GL000009v2_random      111228 1 +    201709 G
s panTro5.chr9                    41795458 1 + 116767853 G
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77762327 1 + 205426864 G
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            164253 1 +    245036 G
i gorGor5.CYUI01000160v1          C 0 C 0
s ponAbe2.chrUn                   67956920 1 -  72422247 G
i ponAbe2.chrUn                   I 8392 N 0
e calJac3.chr7                    35351869 2785 + 155834243 I
e nomLeu3.chr21_GL397661_2_random    85840 0 -    139590 C
e tarSyr2.KE941085v1                860255 383 -   1133132 I

a score=18488.000000
s hg38.chr14_GL000009v2_random      111229 40 +    201709 TGTG--GGGGGGCAGATGACAGGCCACCATAACTTGATTCAG
s panTro5.chr9                    41795459 41 + 116767853 TGTGT-CGGGCGCAGATGACAGGCCACCACAACCTGATTCAG
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77762328 42 + 205426864 TGTGTCGGGGGGCAGATGACAGGCCACCACAACCTGATTCAG
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            164254 40 +    245036 TGTG--GGGGGACAGATGACAGGCCACCACAACCTGATTCAG
i gorGor5.CYUI01000160v1          C 0 C 0
e calJac3.chr7                    35351869 2785 + 155834243 I
e nomLeu3.chr21_GL397661_2_random    85840  0 -    139590 C
e tarSyr2.KE941085v1                860255 383 -   1133132 I

a score=6850.000000
s hg38.chr14_GL000009v2_random      111269 28 +    201709 TCCTCACTGCG-GCTGAGTG--------------------------------------------------------TGTGTGGGT--
s panTro5.chr9                    41795500 84 + 116767853 TCCCCACTGCA-GCTGAGTGTGTCGGGCGCAGATGACAGGCCACCACAACCTGATTCAGTCCCCACTGTGGCTGTATGTGGGGGT--
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77762370 26 + 205426864 TCCTCACTGCG-GCTGAG----------------------------------------------------------TGTGTGGGT--
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            164294 26 +    245036 TCCTCACTGTG-GCTGAG----------------------------------------------------------TGTGTGGGT--
i gorGor5.CYUI01000160v1          C 0 C 0
s calJac3.chr7                    35354654 31 + 155834243 tcctcactgtgcactgggtg--------------------------------------------------------tgtgtggaggg
i calJac3.chr7                    I 2785 C 0
e nomLeu3.chr21_GL397661_2_random    85840  0 -    139590 C
e tarSyr2.KE941085v1                860255 383 -   1133132 I

a score=454414.000000
s hg38.chr14_GL000009v2_random      111297 376 +    201709 GCAGATGACAGGCCAC------CACAacctgattcaggattcagttgggctaccagccagtgccataaggaaaaccattctgggactcttgagaggggcaaagcataatttgcatgtgggagaaacgttaatagtttgtggccagaggacaaactgtggtttattaaagactgctgcaggttcctactattcttctcatcaagaggtggaatctaatcaccttccccccttgaatcatggctggtctcagtgatgagtatgactgg-acagtgtggcaggatagatgctctgggacttctgagggatgatcatgagaggccttacagcttctgcctgggcctcttggacacacaccctgggagaagccagacaaacctgagta-
s panTro5.chr9                    41795584 375 + 116767853 GCAGATGACAGGCCAC------CACAacctgattcaggattcagtt-ggctaccagccagtgccataaggaaaaccattctggggctcttgagaggggcaaagcataatttgcatgtgggagaaatgttaatagtttgtgaccagaggacaagctgtggtttattaaagactgctgtaggttcctactatgcttctcatcaagaggtggaatctaatcaccttccccccttgaatcatggctggtctcagtgatgagtacgactgg-acagtgtggcaggagagatgctctgggacttctgaggggctatcatgagaggccttacagcttctgcctgggcctcttggacacacaccctgggagaagccagacaaacctgacta-
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77762396 379 + 205426864 GAAGATGACAGGCCACCACAATCACAacctgattcaggattcagttgggct-ccagccagtgccataaggaaaaccattctggggctcttgagaggggcaaagcataatttgcatgtgggagaaatgttaatagtttgtggccagaggacaagctgtggtttatt--agactgctgcaggttcctactatgcttctcatcaaaagggggaatctaatccccttccccacttgaatcgtggctggtctcagtgatgagtatgactgg-acagtgtgacaggagagatgctctgggacttctgaggggcgatcatgagaggccttacagattctgcctgggcctcttggacacacgccctgggagaagccagacaaacctgacta-
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            164320 379 +    245036 GCAGATGACAGGCCACCACAATCACAacctgattcaggattcagttgggct-ccagccagtgccataaggaaaaccattctggggctcttgagaggggcaaagcataatttgcatgtgggagaaatgttaatagtttgtggccagaggacaagctgtggtttatt--agactgctgcaggttcctactatgcttctcatcaaaagggggaatctaatcaccttccccccttgaatcacggctggtctcagtgatgagtatgactgg-acagtgtgacaggagaaatgctctgggacttctgaggggcgatcatgagaggccttacagcttctgcctgggcctcttggacacacaccctgggagaagccagacaaacctgacta-
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    85840 376 -    139590 GCAGATGACAGGCCAC------CACAacctgattcgggattcagttgggcttccagccagtgccataaggaaaaccattctggggctcttgagaggggcaaagcatattttgcatgtgggagaaatgttaatagtttgtggcccgagTACAAGCTgtggtttacgaaagactgctacagattcctactatgcttctcatcaagaggtggaatctaatcaccttccccccttgaattgtggctggtctcagtgatgagtacgactag-acagtgtggcaggagggaagctctgggacttctgaggggcgatcatgagaggccttacagcttctgcctgggcctcttggacacacaccctgggagaagccagacaaacctgacta-
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35354685 369 + 155834243 gcagataacAGGCCAC------CAAACCC--------AATCTGGTtgggctttcagctagcgccataaggaaaacagttctggggctcttgagaggggcaaagtatattttgcatgtgggagaaatgttaatagtttgtgaccagagggcaagctgtggtttattaaagactgctgcagattcttactattcttcttatcaaaaggtggaatctaatcaccttcgcc-cttgaattgtggctgctctcagtgaagagtatgactaatacagtgtggcaggagagatgctctcggacttctgaggggcgataatgagaagccttacagcttctgcctgggcctcctgaacacacaccctgggagaagccagacaaatctgactac
i calJac3.chr7                    C 0 C 0
e tarSyr2.KE941085v1                860255 383 -   1133132 I

a score=2252.000000
s hg38.chr14_GL000009v2_random      111673 2 +    201709 ac
s panTro5.chr9                    41795959 2 + 116767853 cc
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77762775 2 + 205426864 cc
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            164699 2 +    245036 cc
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    86216 2 -    139590 cc
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35355054 2 + 155834243 cc
i calJac3.chr7                    C 0 C 0
s tarSyr2.KE941085v1                860638 2 -   1133132 tc
i tarSyr2.KE941085v1              I 383 I 394

a score=469080.000000
s hg38.chr14_GL000009v2_random      111675 432 +    201709 tgacactgccagactgggaggaagtccgtgctggccacaaagagagggctcggtgcctgctccatgtccccagccact------------------------------------------------------------------------------agagtccttctgggtgcctgcttcatgtccccagccactagagtcctcccagatgagaccagggacatcacgaagcagccaacccacactgccctgtccagtgtcttgacccagaaaattgtgacatgtaaaaagaataaattcctggtttaagccagtaaggttactggtacattgttacattgcagataattaaaacCTTGAAAAACTCATGAGAGATCCCAAGTAAAACCTTGATCTGAAACATGGCATGTGGTGATTTATATTGAGTATTAGGTTAAAAATGCAAGAATGGAGCATAGTTAATATTTTACGTTAAAGCTAAAACTATAATTGCCCACTTAAAATTTTCAG
s panTro5.chr9                    41795961 432 + 116767853 tgacactgccagactgggaggaagtccatgctggccagaaagagagggctgggtgcctgctccatgtccccagccact------------------------------------------------------------------------------agagtccttctgggtgcctgcttcacatccccagccactagagtccttccagatgagaccagGGACATCATGAAGCAACCAACCCACACCGACCTGTCCTGTGtcttgacccagaaaattgtgacatgtaaaaagaataaattcctggtttaagccagtaaggttactggtacattgttacATCTCAGATAATTAAAACCTTGAAAAACTCATGAGAGATGACAAGTAGAACCTTGATCTGAAACATGGCATGTGGCGATTTATATGGAGTATTAGGTTAAAAATGCAAGAAGGGAGCATAGTTAATATTTTACGTTAAAGCTAAAACTATAATTGCCTACTTAAAATTTTCAG
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77762777 431 + 205426864 tggtgatgccagactgggaggaagtctgtgctggccacaaagagacggctgggtgcctactccacgtccccagccact------------------------------------------------------------------------------agagtccttctgggtgcctgctccacgtccccagccactagagtccttccagatgagaccagacacatcatgaagcagccaacccacaccaccctgtccagtgtcttgacccagaaaattgtgacatat-aaaaggataaattcctggtttaagccagcaaggttactggtacgttgttacatcacagataattaaaacGTTGAAAAACTCATGAGAGATCACAAGTAGAACCTTGATCTGAAACATGGCATGTGGAGATTTATATTGAGTATTAGGTTAAAAATGCAAGAATGGAGCATAGTTAATATTTTACGTTAAAGCTAAAACTACAATTGCCTACTTAAAATTTTCAG
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            164701 429 +    245036 tgacgatgccagactgggaggaagtctgtgctggccacaaagagaaggctgggtgcctactccacgtccccagccact------------------------------------------------------------------------------agagtccttctgggtgcctgctccacgtccccagccactagagtccttccagatgagaccagagacatcatgaagcagccaacccacacca-cctatacagtgtcatgacccagaaaattgtgacatgt-aaaaggataaattcctggtttaagccagcaaggttactggtacgttgttacatcacagataattaaaacGTT-CAAAACTCATGAGAGATCACAAGTAGAACCTTGATCTGAAACATGGCATGTGGAGATTTATATTGAGTATTAGCTTAAAAATGCAAGAATGGAGCATAGTTAATATTTTACATTAAAGCTAAAACTACAATTGCCTACTTAAAATTTTCAG
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    86218 510 -    139590 tgacgctgccagactgggaggaagtccgtgctggccacaaagagagggctgggtgcctgctccacgtccccagccactagagtccttctgggtgcctgctccatgtctccagccactagagtccttctgagtgcctgctccacttccccaaccaccagagtccttctgggtgcctgctccatgtccccagccactagagtccttccagatgataccagagacatcatgaagcaggcaacccacactgccctgtccagtgtcttgacccagaaaattctgacatgtaaaaagaataaattcctggtttaagccagtaaggttactggtacgttgttacatcagagataactaaaaGGTTGAAAAACTCGTGAGAGATCACAAGTAGAACCTTGATCTGAAACATGGCATGTGGAGATTTATATTCAGTATTAGGTTAAAAATGCAAGAATGGAGCATAGTTAATATTTTACGTTAAAGCTAAAACTATAATTGCCTACTTAAAATTTTTAG
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35355056 375 + 155834243 tgacactgctaggctgggaggAAGTATGTGCTGGCCACAAAGAGAGGGCTGGGTGCCTGCTCCATGTcccctgccact----------------------------------------------------------------------------------------------------------------------gagtccatccagctgagaccagagacatcatgaagctgccaacccacactgccctgtccagcgtcatgacccagaaaatTGTAACATGTAAAAAGAATAAATTTCTAGTTTAAGCCAGTAACGTTACTGGTACATAG--------CAGATAATTAAAACCTTGAAAAACTCATGAGAGATCCCAAGTAGTACCCTGATTTGAAATATGGAATGTGGAGATTTGTAT----TATTAGGCTAAAAAGGCAAGAAT-GAGCATATTTCATACTTTATATTAGAGCTAAAACTATAA----CTATTTAAAATTTTCCA
i calJac3.chr7                    C 0 C 0
e tarSyr2.KE941085v1                860640 394 -   1133132 I

a score=13002.000000
s hg38.chr14_GL000009v2_random      112107 10 +    201709 TTAATTAGGT
s panTro5.chr9                    41796393 10 + 116767853 TTAATTAGGT
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77763208 10 + 205426864 TTAATTAGGT
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            165130 10 +    245036 TTAATTAGGT
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    86728 10 -    139590 TTAATTAGGT
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35355431 10 + 155834243 TTAATGAGGT
i calJac3.chr7                    C 0 C 0
s tarSyr2.KE941085v1                861034  8 -   1133132 TTAATTAC--
i tarSyr2.KE941085v1              I 394 I 193

a score=22059.000000
s hg38.chr14_GL000009v2_random      112117 25 +    201709 TGTCACTTTTTGTTCTTAACCAAGA
s panTro5.chr9                    41796403 25 + 116767853 TGTCACTTTTTGTTCTTAACCAAGA
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77763218 25 + 205426864 TGTCACTTTTTGTTCTTAACCAAGA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            165140 25 +    245036 TGTCACTTTTTGTTCTTAACCAAGA
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    86738 25 -    139590 TTTCAATTTTTGCCCTTAACCAAGA
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35355441 17 + 155834243 GGTCA-TTTTTGTTC-------AGA
i calJac3.chr7                    C 0 C 0
e tarSyr2.KE941085v1                861042 193 -   1133132 I

a score=10331.000000
s hg38.chr14_GL000009v2_random      112142 7 +    201709 TATCAAC
s panTro5.chr9                    41796428 7 + 116767853 AATCAAC
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77763243 7 + 205426864 AATCAAC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            165165 7 +    245036 AATCAAC
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    86763 7 -    139590 AATCAAC
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35355458 7 + 155834243 AATCAAC
i calJac3.chr7                    C 0 C 0
s tarSyr2.KE941085v1                861235 7 -   1133132 TATCTAC
i tarSyr2.KE941085v1              I 193 I 3888

a score=2338584.000000
s hg38.chr14_GL000009v2_random      112149 2027 +    201709  
s panTro5.chr9                    41796435 2027 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77763250 2032 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            165172 2040 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    86770 2021 -    139590  
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35355465 2002 + 155834243  
i calJac3.chr7                    C 0 C 0
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=28242.000000
s hg38.chr14_GL000009v2_random      114176 18 +    201709 ccatgactgcaaacccgg
s panTro5.chr9                    41798462 18 + 116767853 ccatgactgcaaacccgg
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77765282 18 + 205426864 ccatgactgcagacctgg
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            167212 18 +    245036 ccatgactgcagacccgg
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    88791 18 -    139590 ccatgactgcagacctgg
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s papAnu3.chr11                   55778487 18 - 132286798 gcatgactatggacccag
i papAnu3.chr11                   N 0 I 792
s calJac3.chr7                    35357467 18 + 155834243 ccatgactgtagacctag
i calJac3.chr7                    C 0 C 0
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=487591.000000
s hg38.chr14_GL000009v2_random      114194 421 +    201709 gcatctctgcactctcagaggcccagcaagcccccctgcccc-gcaggctcagttgtacctggtcctgccacctggcgtccctctgcttccagaacccactccaaattcggatccaagttgaggccaaacccgggcacagtcacaacacggcccggtttgtgcaagctcagggcagtgctgacatgccagccccctgccaccttggc--cccctccagactttgggcactggcaagcacaggagggagggtgaggtggggctaagagtggctcagcagtggccagaaggccctcctcagctcgaac-gcctgggcactatgggcacagctacccaccgtgcatctcctctcagctgctgagagctgaacagacgttgggatgacctgcctgcagaaaggaactacccactgcaggtctcctctga
s panTro5.chr9                    41798480 418 + 116767853 gcatctttgcactctcagaggcccagcaagccccccttcccctgcaggctcagtcgtacctggtcccaccacctggcatctctccactcccagagcccactccaacttcggatccaagttgaggctgaacccgggcacagtcgcaacccagccccgtttgtgcaaactcagggcagtgctgacatgccagctccctaccacctcggc--tccctccagactttgggcactgacaagcacaggagggaggttgaggtggggctaagagtggctcagcactggcctgaaggcactcctcagctcgaacagcctgggcactgtgggcacagctatccaccatgcg-----tctcagctgctgagagctgaacagacgttgggatgacctgcctgcagaaaggagctacccactgcaggtctcctctga
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77765300 423 + 205426864 gcatctctgcactctcagaggtccagcaagaccccctgcccctgcaggctcagtcatacctggtcctgccacctggcgtgtctctgctcccagagcccactccaaatttggatccaagttgaggccaaacccaggcacagtcgcaacccggcccagtgtgtgcaagctcagggcagtgctgacatgccagccccctgtcacctcggc--tccctccagactttgggcactgatgagcacaggagggaggttgaggtggggctaagtgtggctcagcactggcctgcaggcactcctcagctcaaacagcctgggcactgtgggcacagctacccaccatgggtctcctctcagctgctgagagctgaacagacatcgggatgacctacctgcagaaaggagctacccactgcaggtctcctctga
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            167230 422 +    245036 gcatctctgcactctcagaggcccagcaagcccccctgcccctgcaggctcagtcatacctggtcctgccacctggtgtctctctgctcccagagcccactccaaatttggattcaagttgagggcaaacccaggcacagtcgcaacccggcccggtgtgtgcaagctcagggcagtgctgacatgccagcctcctgtcacctcggc--cccctccagactttgggcactgacgagcacaggagggaggttgaggtggggctaagggtggctcagcactggcctgcaggcactcctcagctcgaacagcctgggcactgtgggcacagctacccaccatgggtctcctctc-gctgctgagagctgaacagacatcgggatgacctgcctgcagaaaggagctacccactgcaggtctcctctga
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    88809 423 -    139590 gcatctctgcactctcagatgcccagcaagcccccctgccccttcaggttcagtcatacctggtcccgccacctggcatctctctgctcccagagcccactccaactttggatccaagttgaggctgaacccgggcaccgtcgcaacccagcccagtgtgtgcaagctcagggcagtgctgacctgccagccacctgccacctcggc--cccctccagactttgggcactgacgagcacaggagggaggttgaggtggggccaagagtggctcagcactggcctgcaggcactcctcagctcaaacagcctgggcactgtgggcacagctacccactgtgggtctcctctcagctgctgagagctgaacagacatcaggatgacctgcctgcagaaaggagttacccactgcaggtctcctctga
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35357485 418 + 155834243 gcacctgtgctctctcaggggtctggcaagcccccctacccctacaggctcagacatacctgatcctaccacctggcctctccctgctcccagagcccactccaactttggatcaaagtcgaggctgaacctgggcactgtcacaacctggctgggtgtgtgcactctca-ggcagtgctaacgtgccagtcccctgccacatcagccacccccccagactctgggcactgacaaacacaggaagga-gtcaaggtggggctaagggtggctcagccctggcctgcaggcacccctcaacacaaataacctgggcac--tgggcatagctacccactgtgggtctcctctc---tactgagagctgaacaaatgtctggatgacctgcctgtggagaggagctacccattccatgtctcctctga
i calJac3.chr7                    C 0 C 0
e papAnu3.chr11                   55778505 792 - 132286798 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=750.000000
s hg38.chr14_GL000009v2_random      114615 1 +    201709 g
s panTro5.chr9                    41798898 1 + 116767853 g
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77765723 1 + 205426864 g
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            167652 1 +    245036 c
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    89232 1 -    139590 g
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s papAnu3.chr11                   55779297 1 - 132286798 g
i papAnu3.chr11                   I 792 N 0
s calJac3.chr7                    35357903 1 + 155834243 g
i calJac3.chr7                    C 0 C 0
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=1762393.000000
s hg38.chr14_GL000009v2_random      114616 1522 +    201709  
s panTro5.chr9                    41798899 1526 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77765724 1498 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            167653 1502 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    89233 1506 -    139590  
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35357904 1460 + 155834243  
i calJac3.chr7                    C 0 I 5342
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=369344.000000
s hg38.chr14_GL000009v2_random      116138 462 +    201709 ctataatgtggtgaggagggtgacagagcAAGACGCAATCTTT--AAAAAAAAAAAATggccaggtgcagtggctcgtgcttgtaatcccaacacttggggaggctgaggcaggtggatcacctgaggtaaggagttcagggccagcctgaccaacaaggaaaaaccccgtctctactaaaaacacaaaattagctgggcatggtggcccatgcctctaatcccagctactcaggaggctggggcaggagaatcgcttgaacaggggaggcagggggttgcagtgaaccgagatcacaccattgcactccagcctgggcaacaagagggaaaatccatctcaaaaaaaaaaaaaaaaaaaaaaagaaagaaTAataggtttgtctataaggttttatgaaaaagtgggtgacatttggctttctctctttaaagaagatgttcaggtaatattaaaaaataatg
s panTro5.chr9                    41800425 450 + 116767853 ctataatgtggtgaggagggtgatggagcaagacgctATCTTT--AAAAAAAAAAAATggccaggggcagtggctcatgcctgtaatcgcaacacttggggaggccgaggcaggtggatcacctgaggtcaggagttcagggccagcctgaccaacaaggaaaaaccccgtctctactaaaaacacaaaattagctgggcatggtggggcatgcctctaaccccagctactcagga-gctggtgtgggagaattgcttgaacctgggaggcagggggttgcagtaaaccaagatcgcaccactgcactccagcctgggcaacaagagggaaaatccatctcaaaaaaaaaaaaa-----------aaagaaTAatagatttgcctataaggttttatgaaaaagtgggtgacatttggctttctctctttaaagaagattttcagataatattaaaaaataatg
i panTro5.chr9                    C 0 I 6563
s panPan2.chr3                    77767222 448 + 205426864 ctataatgtggtgagGAgggcgacagagcaagacgctatcttt-aaaaaaaaaaaaaTgggcaggcgcagtggctcatgcctgtaatcccaacacttggggaggctgaggcaggtggatcacctgaggtcaggagttcagggccagcctgaccaacaaggaaaaaccccgtctctactaaaaacacaaaattagctgggcatggtggcgcatgcctctaatcccagctactcaggaggctggggcgggagaatctcttgaacccgggaggcagggggttgcagtgaactgagatcacaccattgcactccagcctgggcaacaagagggaaaatccatctcaaaaaaaaaagaa---------------GATAatagatttgtctataaggttttatgaaaaattgggtgacatttggctttctctctttaaagaagattttcaggtaatattaaaaaataatg
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            169155 445 +    245036 ctataatgtggtgaggagggcgacagagcAAGACGTTATCTTTAAAAAAAAAAAAAATggccaggcgcagtggctca-gcctgtaatcccaacacttggggaggctgaggcaggtggatcacctgaggtcaggagttcagggccagcctgaccaacaaggaaaaaccccgtctctactaaaaacacaaaattagctgggcatggtggcgcatgcctctaatcccagctactcaggaggc-agggcgggagaatctcttgaacccaggaggcagggggttgcagtgaaccgagatcacaccattgcactccagcctgggcaacaagagggaaaatccatctcaaaaaaaaaaaga----------------aTAatagatttgtctatgaggttttatgaaaaattcggtgacatttggctttctctctttaaagaagattttcaggtaatattaaaaaat-atg
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    90739 449 -    139590 ttataatgtggtgaggagggtgacAGAGAATGATGCTATCTTT-----AAAAAAAAATggccaggagcagtggctcacgcctgtaatcccaacacttggggaggctgaggcaggtggatcacctgaggtcaggagttcagggccagcctgaccaacaaggaaaaaccccgtctctactaaaaacacaaaattagctgggcatggtggtgcatgcatctaatcccagctactcaggaggctggggtgggagaatcacttgaacccaggatggagggggttgcagtgaactgagatcgcaccattgcactccagcctgggcaacaagagggaaaatccatctcaaaaaaaaaaTTA----------ATAATAATAatagatttgtctataaggttttatgaaaaattgggtgacatttggctttctctctttaaagaagattttcaggtaatattaaaaaataatg
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=221668.000000
s hg38.chr14_GL000009v2_random      116600 444 +    201709 aaaaatttgtttgccttttaaataaactaccaaaaaaaaaaa---aggaaaaacaagaggcagatcgtttgtgaagataagtcttccctctatcaatgagtaaagatttttgccctttaaaacttttttaagtcatgattttaagtaaatgaatgacttacggtgacctggaattctatttcataacatcaagtgtttaaacttttaatatatttaataggcttcccaaaatcaaatttcaacttcaaaattgtcttttctgacctctacctttgggatactacagaggcccttgaagcacccaaaagagaggtaaacaggactatttaacatgttaagtcacatgggtagcactgtcaaaataaaacataatgttgaaccttcttgaggttatatttagtttatgtcatcaaccctttctaaaattgtataggatttctaaaattc
s panPan2.chr3                    77767670 445 + 205426864 aaaaatttgtttgccttgtaaataaactaccaaaaaaaaaaaaacaggaaaaacaagaggcagattgtttgggaaggtaagtcttccctctatcaatgagtaaagatttttgccctttaaaaa-tttttaagtcatgattttaggtaaatgaatgacttacggtgacctggaattctatttcataacatcaagtgtttaaacctttaatatatttaataggcttcccaaaatcaaatttcaacttcaaaattgtcttctctgacctctaactttgggatgctacagaggcccctgaagcacccaaaagagaggtaaacaggactatttaacatgttaagtcacatgggaagcactgtcaaaataaaa-ataatgttgaaccttcttcaggttatatttagtgtatgtcatcaatccattctaaaattgtatagaatttctaaaattc
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            169600 446 +    245036 aaaaatttgtttgccttgtaaataaactaccgaaaaaaaaaaaaaaggaaaaacaagaggcagattgtttgggaaggtaagtctactctcta-caatgagtaaagactttcgccctttaaaaattttttaagtcatgattttaggtaaatgaatgacttacggtgacctggaattctatttcataacatcaagtgtttaaacctttaatatatttaataggcttcccaaaatcaaatttcaacttcaaaattgtcttctctgacctctaactttgggatgctacagaggcccctgaggcacccaaaagagaggtaaacaggactatttaacatgttaagtcacatgggaagcactgtcaaaataaaaaataatgttgaaccttcttcaggttatatttagtgtatatcatcaatccattctaaaattgtatagaatttctaaaattc
i gorGor5.CYUI01000160v1          C 0 I 6034
s nomLeu3.chr21_GL397661_2_random    91188 442 -    139590 aaaaatttgtttgccttgtaaataaactaccaaaaaaaagaa---agaaaaaacaagaggcacatcattagggaagataagtcttccctttatcaatgagtaaagatttttgtcctttaaaaattttttaagccatgattttaggtaaatgaatgac--actgtgagctggaattctatttcataacatcaagtgtttaaacttttaatatatttaataggcttcccaaaatcaaatttcaacttcaaaattgtcttttctgacctctaactttgggatgctacagaggcccctgaagcaccccaaagagaggtaaacaggactatttaacatgttaagtcacatgggaagcactgtcaaaataaaaaataatgttgaaccttcttcaggttgtatttagtgtaagtcatcaatgcattctaaaattgtataggatttctaaaattc
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I
e panTro5.chr9                    41800875 6563 + 116767853 I

a score=4845.000000
s hg38.chr14_GL000009v2_random      117044 10 +    201709 tttttttttt
s panPan2.chr3                    77768115 10 + 205426864 tttgtttttt
i panPan2.chr3                    C 0 I 27
s gorGor5.CYUI01000160v1            176080 10 +    245036 tttttttttt
i gorGor5.CYUI01000160v1          I 6034 C 0
s nomLeu3.chr21_GL397661_2_random    91630 10 -    139590 tttttttttt
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I
e panTro5.chr9                    41800875 6563 + 116767853 I

a score=15197.000000
s hg38.chr14_GL000009v2_random      117054 69 +    201709 cccccgagacggagtcttgctctgtcaccaaggctagagtacagtggcacaatctcggctcactgcaac
s gorGor5.CYUI01000160v1            176090 69 +    245036 tttctgagacagagtcttgccctgtcacccaggctggagtacagtggcgcgatctcggctcactgcaag
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    91640 66 -    139590 ---ctgagatggagtcttgctctgtcacccaggctggagtacagtggtgtgatctctgctcactgcaag
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e panPan2.chr3                    77768125 27 + 205426864 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I
e panTro5.chr9                    41800875 6563 + 116767853 I

a score=382830.000000
s hg38.chr14_GL000009v2_random      117123 793 +    201709  
s panPan2.chr3                    77768152 810 + 205426864  
i panPan2.chr3                    I 27 C 0
s gorGor5.CYUI01000160v1            176159 810 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    91706 818 -    139590  
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I
e panTro5.chr9                    41800875 6563 + 116767853 I

a score=1379889.000000
s hg38.chr14_GL000009v2_random      117916 1674 +    201709  
s panTro5.chr9                    41807438 1680 + 116767853  
i panTro5.chr9                    I 6563 C 0
s panPan2.chr3                    77768962 1684 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            176969 1677 +    245036  
i gorGor5.CYUI01000160v1          C 0 I 291
s nomLeu3.chr21_GL397661_2_random    92524 1680 -    139590  
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=33707.000000
s hg38.chr14_GL000009v2_random      119590 47 +    201709 tgctaaaccagaaacccaaaacaatgggagtgacatgctaaACCAGA-
s panTro5.chr9                    41809118 47 + 116767853 tgctaaaccagaaacccaaaacaacggGAGTAACATGCTAAACCAAA-
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77770646 47 + 205426864 tgctaaaccagaaacccaaaacaatgggagtgacgtgctaaaaccGG-
i panPan2.chr3                    C 0 I 294
s gorGor5.CYUI01000160v1            178937 47 +    245036 TGCTAAACCAGAAACCCAAAACAATGGGAGTGATGTGCTAAAACTGG-
i gorGor5.CYUI01000160v1          I 291 C 0
s nomLeu3.chr21_GL397661_2_random    94204 47 -    139590 tgctaaact-gaaacccaaaacaatgggagtgacgtgctaaaaccAGA
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=48019.000000
s hg38.chr14_GL000009v2_random      119637 56 +    201709 AACCCAAAACAATGGGACTGATGTACTAAAACCGGAACCCAAAACAATGGGAGTGA
s panTro5.chr9                    41809165 56 + 116767853 AACCCAAAACAATGGAAGTGATGTACTAAAACTGGAACCCAAAACAATGGGAGTGA
i panTro5.chr9                    C 0 I 2
s panPan2.chr3                    77770987 56 + 205426864 aacccaaaacAATGGGAGTGATGTGCTAAAACCGGAACCCAAAACAATGGGAGTGA
i panPan2.chr3                    I 294 C 0
s gorGor5.CYUI01000160v1            178984 56 +    245036 AACCCAAAACAACGGGAGTGATGTCCTAAAACCGGAACCCAAAACAATGGGAGTGA
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    94251 56 -    139590 AACCCAAAACAATGGGAGTGAGGTGCTAAAACCAGAACCCAAAACAATGGGAGTGA
i nomLeu3.chr21_GL397661_2_random C 0 I 312
e calJac3.chr7                    35359364 5342 + 155834243 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=63279.000000
s hg38.chr14_GL000009v2_random      119693 82 +    201709 TGTACTAAAACCAGAACCCAAAACAATGGGAGTGACGTGCTAAACCAGAAACCCAAAACAATGGGAGTGACGTGCTAAAACC
s panTro5.chr9                    41809223 82 + 116767853 TGCACTAAAACCAGAACCCAAAACAATGGGAGTGACGTGCTAAACCAGAAACCCAAAACAATGGGAGTGACTTGCTAAAACC
i panTro5.chr9                    I 2 C 0
s panPan2.chr3                    77771043 82 + 205426864 CGTGCGAACACCAGAACCCAAAACAATGGGAGTGTCCTGCTAAACCAGAAACCCAAAACAACGGGAGTGACATGCTAAAACC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            179040 82 +    245036 TGGACTAAAACCTGAACCCAAAACAATGGGAGTAACCTGCTAAACTAGAAACCCAAAACAATGGGAGTGACGTGCTAAAACC
i gorGor5.CYUI01000160v1          C 0 I 1465
s nomLeu3.chr21_GL397661_2_random    94619 81 -    139590 TGTGCTAAAACCGGAACCCATAACAATGGGAGTGACGTGCTAAACCAGAAACCCAAAACAATGGGAGTGATGTGCTAAACC-
i nomLeu3.chr21_GL397661_2_random I 312 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=17635.000000
s hg38.chr14_GL000009v2_random      119775 24 +    201709 ATTACCCAAAACAATGGgagtgat
s panTro5.chr9                    41809305 24 + 116767853 GGAACCCAAAACAATGGGAGTGAT
i panTro5.chr9                    C 0 I 527
s panPan2.chr3                    77771125 24 + 205426864 GGAACCCAAAACAATGGGAGAGAT
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            180587 24 +    245036 GGAACCCAAAACAATGGgagtgat
i gorGor5.CYUI01000160v1          I 1465 C 0
s nomLeu3.chr21_GL397661_2_random    94700 24 -    139590 AGAACCCAAAATACTGGgagtgac
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=7024.000000
s hg38.chr14_GL000009v2_random      119799 11 +    201709 gtgctaaaccg
s panTro5.chr9                    41809856 11 + 116767853 gtgctaaaacc
i panTro5.chr9                    I 527 C 0
s panPan2.chr3                    77771149 11 + 205426864 GTGCTAAACCA
i panPan2.chr3                    C 0 I 139
s gorGor5.CYUI01000160v1            180611 11 +    245036 gtgctaaaccg
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    94724 11 -    139590 ctgctaagccg
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=15377.000000
s hg38.chr14_GL000009v2_random      119810 17 +    201709 gaaacccaaaacaatgg
s panTro5.chr9                    41809867 17 + 116767853 ggaacccaaaacaatgg
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77771299 17 + 205426864 GGAACCCAAAACAATGG
i panPan2.chr3                    I 139 I 146
s gorGor5.CYUI01000160v1            180622 17 +    245036 gaaacccaaaacaatgg
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    94735 17 -    139590 gaaacccaaaacaatgg
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=55313.000000
s hg38.chr14_GL000009v2_random      119827 112 +    201709 taactaagagtgaggctaaggccctacattttggtcacactctcaactaagtgagaacttgactgaaaaggaggattttcttttt---ctgagacagagtcttgctctgtccccc
s panTro5.chr9                    41809884 115 + 116767853 taactaagagggatgctaaggccctacattttggtcacactctcaactaagtgagaacttgactgaaaaggaggatttttttttttttctaagacagagtcttggtctgtccccc
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            180639 114 +    245036 taactaagagtggtgctaaggccctacattttggtcacactctcaactaagtgagaacttgactaaagaggaggaattttttttt-ttctgagatagagtcttgctctgtccccc
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    94752 112 -    139590 taactaagagtggtgctaaggccctacattttggtcatgctctcaactaagtgagaacttgactaaaaaggaggatttttttttt---ttgagacagagtcttgctctgtccccc
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e panPan2.chr3                    77771316 146 + 205426864 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=153868.000000
s hg38.chr14_GL000009v2_random      119939 208 +    201709 agagtggagtgcagtggcatgatctcggctcactgcaagctctgcctcccgggttcaggccattctcctgcctcagcctcctgagtagctgggactacaggcacccgccagcattcttggctatttttttgtgtatttagtagagatgaggtttcgccgtattagcaaggatggtctcaatctcctgatctcgtgatctgcccacctc
s panTro5.chr9                    41809999 208 + 116767853 agagtggagtgcagtggcatgatcttggctcactgcaagctccatctcctgggttcaggccattctcctgcctcagccttctgagtagctgggactacaggcacccaccaccacacttggctaattttttgtatttttagtagagatggggtttcaccatattaacaaggatggtctcaatctcctgaccttgtgatctgcccacctc
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77771462 203 + 205426864 -aggtggagtgcagtggcaagatcttggctcattgcaagttctgcctcctgggttcaggccatt---ctgcctcagcctcccaagtagctgggactacaggtgcccaccaccacgctcggctaa-tttttgtattttcagtagagacggggtttcaccgtattagccaggacggtctcaatctcctgaccttgtgatccacccacctc
i panPan2.chr3                    I 146 C 0
s gorGor5.CYUI01000160v1            180753 204 +    245036 agagtggagtgcagtggcaagatcttggctcattgcatgttccgcctcccaggttcaggccatt---ctgcctcagcctcccaagtagctgggactacaggtgcccaccaccacgctcagctaa-tttttgtatttttagtagagacagggtttcaccgtattagccaggagggtctcaatctcctgaccttgtgatccacccacctc
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    94864 208 -    139590 agagtggagtgcagtgacatgatctcagctcactgcaacatctgcctcccaggttcacaccattctcctgcctcagcctccctagtagctgggactacaggtgtctgccaccacgcttggctaattttttgtatctttaatagagatggggtttcaccgtattagccaggatggtctcaatctcctgaccttgtgatccacacgccgc
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=350650.000000
s hg38.chr14_GL000009v2_random      120147 681 +    201709  
s panTro5.chr9                    41810207 680 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77771665 681 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            180957 680 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
e calJac3.chr7                    35359364 5342 + 155834243 I
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=114538.000000
s hg38.chr14_GL000009v2_random      120828 141 +    201709 cacttccc-------ttttgtctacaaatcttcttccaccacatgactgtgctggagtctctgtgaatctgctgtgattctggggactttccgattcatgaatcgtttattgctcagttaaactcctttaaagtttttcttttaacaG
s panTro5.chr9                    41810887 141 + 116767853 cactttcc-------ttttgtctataaatcttctgccaccacatgactgcactggagtctctgtgaatctgctgtgattctggggactgtccgattcgtgagtcgcttattgctcaattaaactcctttaaagtttttcttttaacaG
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77772346 141 + 205426864 cacttccc-------ttttgtctataaatcttcttccaccacatgactgtgctggagtctctgtgaatctgctgtgtttctggggactctccgattcatgaatcgtttattgctcaactaaactcctttaaagtttttcttttaacaG
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            181637 141 +    245036 cacttccc-------ttttgtctataaatcttcttccaccacatgactgcgctggagtctctgtgaatctgctgtgattctggggactctccgattcgtgaatcgtttattgctcaactaaactcctttaaagtttttcctttaacaG
i gorGor5.CYUI01000160v1          C 0 C 0
s calJac3.chr7                    35364706 147 + 155834243 cacttccctttttttttttgtctataaatctttctccaccacacgactggactggagtctctctg-atctgctgtgattctgggggctgtccgatttgtgaatcatttattgctcaattaaacccctttaaagtttttcttttaacaG
i calJac3.chr7                    I 5342 C 0
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=39298.000000
s hg38.chr14_GL000009v2_random      120969 37 +    201709 AACTAACACGGAAGAATTTCCAG-------ATCATGAACAGATG
s panTro5.chr9                    41811028 37 + 116767853 CACTAACACAGAAGAATTTCCAG-------ATCATGAACAGATG
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77772487 37 + 205426864 AACTAACACAGAAGAATTTCCAG-------ATCATGAACAGACA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            181778 37 +    245036 AACTAACACAGAAGAATTTCCAG-------ATCGTGAACAGACA
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       41229 43 -     87690 AACTAACACAGAAGAATTTCCAGGAGAAAAATCATGAAC-GATA
i macFas5.chr5_KE145639_random    N 0 C 0
s calJac3.chr7                    35364853 40 + 155834243 AACTAACACAGAAGAATTTTCAGGAG----ATCATAAACAGACA
i calJac3.chr7                    C 0 C 0
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=6979.000000
s hg38.chr14_GL000009v2_random      121006 11 +    201709 TTTTGTAATAC
s panTro5.chr9                    41811065 11 + 116767853 GTTTGTAATAC
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77772524 11 + 205426864 TTTtgtaatac
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            181815 11 +    245036 TTTtgtagtac
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       41272 11 -     87690 ATTTGAAATGc
i macFas5.chr5_KE145639_random    C 0 I 363
e calJac3.chr7                    35364893  0 + 155834243 C
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=302861.000000
s hg38.chr14_GL000009v2_random      121017 599 +    201709  
s panTro5.chr9                    41811076 600 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77772535 599 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            181826 599 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
e calJac3.chr7                    35364893   0 + 155834243 C
e macFas5.chr5_KE145639_random       41283 363 -     87690 I
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=6550.000000
s hg38.chr14_GL000009v2_random      121616 7 +    201709 TTTCAAC
s panTro5.chr9                    41811676 7 + 116767853 TTTCAAC
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77773134 7 + 205426864 TTTCAAC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            182425 7 +    245036 TTTCAAC
i gorGor5.CYUI01000160v1          C 0 C 0
s calJac3.chr7                    35364893 7 + 155834243 TTTCAAC
i calJac3.chr7                    C 0 C 0
e macFas5.chr5_KE145639_random       41283 363 -     87690 I
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=333054.000000
s hg38.chr14_GL000009v2_random      121623 316 +    201709 TATGGTAGAAGACTCGAGTAAGACAAAT--------ACAGCCCCCCTAAATTTGACTATTATTTAGGTTAATGGTGAGT-TTAGAAGAAATAAGTTAAGACTACACAGAGTGGGCTAAATTGCAAATAAACACTGAAAATATttcccagaaaatatgactttgaacaggctgctgcacaccctgcatgtagagataaactaagaaaaatgtgtggagagttatttaaggacctgtggttaactcagtcctcaagatgttccgggtttcatccatgagtcaaggaggacctcccaaaagctgtttgggaccacactctttgagcAA
s panTro5.chr9                    41811683 311 + 116767853 TATGGTAGAAGACTCGAGTAAGGCAAAT--------ACAGTCCCCCTAAATTTGACTATTATTTAGGTTAATGGTGAGT-TTAGAAGAAA-----TAAGACTACACAGAGTGGGCTAAAGTGCAAATAAACACTGGAAATATttcccagaaaatatgactttgaagaggctgctgcacaccccgcatgtagagataaactaagaaaaaggtgtggagagttatttaaggacctagggttaactcagtcctcagaatgttccgggtttcatccatgaatcaaggaggacctcccaaaagctgtttgggaccacactctttgagcAA
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77773141 316 + 205426864 TATGGTAGAAGACTCGAGTAAGGCAAAC--------ACAGTCCCCCTAAATTTGACTATTATTTAGGTTAATGGTGAGT-TTAGAAGAAATAAGTTAGGACTACACAGAGTGGGCTAAAGTGCAAATAAACACTGGAAGTATttcccagaaaatatcactttgaacaggctgctgcacaccctgcatgtagagataaactaagataaaggtgtggagagttatttaaggatctgtggttaactcagttctcaagatgttccgggtttcatccatgaatcaaggaggacctcccaaaagctgtttgggaccacattctttgagcAA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            182432 316 +    245036 TATGGTAGAAGACTCGAGTAAGGCAAAC--------GCAGTCCCCCTAAATTTGACTATTATTTAGGTTAATGGTGAGT-TTAGAAGAAATAAGTTAGGACTACACAGAGTGGGCTAAAGTGCAAATAAACACTGGAAGTATttcccagaaaatatcactttgaacaggctgctgcacaccctgcatatagagataaactaagataaaggtgtggagagttatttaaggacctgtggttaactcagttctcaagatgttccaggtttcatccatgaatcaaggaggacctcccaaaagctgtttgggaccacactctttgagcAA
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       41646 317 -     87690 TATGGCACAAGATTCAAGTAAGGCAGAC--TAGAGAATAG--CCAATGGATTTGCATATAATTTAGGTTAATGGTGAGCATCAGAATAAATGAATTAAGACTACACTGAATG----AAAGCGCAAGTGAGCAGTGGaaatatttgtcagaaaatacaactgtgaacaatctgctacaaattctccatgtacagatgaattgacagaaacatatggggggttagttaaggacctgtggtcaactcaatcctccagatgttctaggttttagccatgaatcaagtagggccttccaaaagctgtctgagatcacactgtttcagcaa
i macFas5.chr5_KE145639_random    I 363 I 24
s calJac3.chr7                    35364900 315 + 155834243 TATAGTAGAAGATTTGAGTAAGGCAAACATTAGAGAACA--CTCCCTAAATTTGACTATTATTTAGGTTAATGGTGAGT-GCAGAAGAAG-----TAAGACTACATAGAGTGGGCTAAAGTACAAATAAACACTGGGAgtatttcccagaaaatgtaactttgaacaggctgttgcacaccctgcatgtagagataaactaagaaaaatgcgtggagacttacttaagaacctgctgtcaactcaatctgcaagatgttccaagtttcatccatgaatcaaggagagcctcccaaaagctgtttgggaccacactC--TGAGCAA
i calJac3.chr7                    C 0 C 0
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=30336.000000
s hg38.chr14_GL000009v2_random      121939 46 +    201709 GGAGCATACCTTATGATGGAAGCTGTGCTTTAGCAGCAGATGACCA
s panTro5.chr9                    41811994 36 + 116767853 GGAGCATACCTTACGATGGAAGCTGTGCTTTAGTGG----------
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77773457 46 + 205426864 GGAGCATACCTTACGATGGAAGCTGTGCTTTAGCAGCAGATGACCA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            182748 46 +    245036 GGAGCATACCTTACGATGGAAGCTGTGCTTTAGCAGCAGATGACCA
i gorGor5.CYUI01000160v1          C 0 C 0
s calJac3.chr7                    35365215 46 + 155834243 GGAGTAACCCTTATCATGGAAGCTGTGCTGCAGCAGTAGGTGACCA
i calJac3.chr7                    C 0 C 0
e macFas5.chr5_KE145639_random       41963 24 -     87690 I
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=5195.000000
s hg38.chr14_GL000009v2_random      121985 19 +    201709 TTTCCACTGCACAACACGC
s panPan2.chr3                    77773503 19 + 205426864 TTTCCACTGCACAACATGC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            182794 19 +    245036 TTTCCACTGCACAACACGC
i gorGor5.CYUI01000160v1          C 0 T 44
e calJac3.chr7                    35365261  0 + 155834243 C
e macFas5.chr5_KE145639_random       41963 24 -     87690 I
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I
e panTro5.chr9                    41812030  0 + 116767853 C

a score=338.000000
s hg38.chr14_GL000009v2_random      122004  40 +    201709 CGTGCTTTAGCAGACGATGACCATTTCCACTGTACAACAT----------------------------------------------------------------------
s panPan2.chr3                    77773522 110 + 205426864 TGTGCTTTAGCGGAAGATGACTGTTTCCACTGCACAACACTACAAGTGTTTACTGCCAGGCTGGTGTGAAATATGTTCCACCACAGCAAGGAGCATACCTTATGATGGAA
i panPan2.chr3                    C 0 C 0
e calJac3.chr7                    35365261   0 + 155834243 C
e macFas5.chr5_KE145639_random       41963  24 -     87690 I
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I
e gorGor5.CYUI01000160v1            182813  44 +    245036 T
e panTro5.chr9                    41812030   0 + 116767853 C

a score=38247.000000
s hg38.chr14_GL000009v2_random      122044 84 +    201709 GCTGTGCTTTAGCGTCAGATGACCATTTCCACTGCACAACACGCCATGCTTTAGCGGAAGATGACCATTTCCACTGCACAACAC
s panTro5.chr9                    41812030 69 + 116767853 ---------------CAGATGACCATTTCCACTGCACAACACGCCATGCTTTAGCGGAAGATGACCATTTCCACTGCACAACAC
i panTro5.chr9                    C 0 I 954
s panPan2.chr3                    77773632 84 + 205426864 GCTGTGCTTTAGCGGCAGATGACCTTTTCCACTGCACAACACACTGTGCTTTAGCGGCAGATGACCATTTCCACTGCACAACAC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            182769 84 +    245036 GCTGTGCTTTAGCAGCAGATGACCATTTCCACTGCACAACACGCCATGCTTTAGTGGAAGATGACTGTTTCCACTGCACAACAC
i gorGor5.CYUI01000160v1          T 44 T 40
e calJac3.chr7                    35365261  0 + 155834243 C
e macFas5.chr5_KE145639_random       41963 24 -     87690 I
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=329.000000
s hg38.chr14_GL000009v2_random      122128 2 +    201709 GT
s panPan2.chr3                    77773716 2 + 205426864 GC
i panPan2.chr3                    C 0 C 0
s macFas5.chr5_KE145639_random       41987 2 -     87690 gt
i macFas5.chr5_KE145639_random    I 24 C 0
e calJac3.chr7                    35365261 0 + 155834243 C
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I
e gorGor5.CYUI01000160v1            182853 40 +    245036 T
e panTro5.chr9                    41812099 954 + 116767853 I

a score=8293.000000
s hg38.chr14_GL000009v2_random      122130 23 +    201709 CATGCCTTAGCGGAAGATGACTG
s panPan2.chr3                    77773718 23 + 205426864 CGTGCTTTAGCGGAAGATGACCG
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            182813 23 +    245036 CATGCTTTAGTGGAAGATGACTG
i gorGor5.CYUI01000160v1          T 40 C 0
s macFas5.chr5_KE145639_random       41989 23 -     87690 tgtgctttagcactaAGTGACTA
i macFas5.chr5_KE145639_random    C 0 C 0
e calJac3.chr7                    35365261  0 + 155834243 C
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I
e panTro5.chr9                    41812099 954 + 116767853 I

a score=411725.000000
s hg38.chr14_GL000009v2_random      122153 643 +    201709  
s panPan2.chr3                    77773741 643 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            182836 642 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       42012 631 -     87690  
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35365261 629 + 155834243  
i calJac3.chr7                    C 0 I 450
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I
e panTro5.chr9                    41812099 954 + 116767853 I

a score=39236.000000
s hg38.chr14_GL000009v2_random      122796 79 +    201709 TCAAGTTAAGATAAGA--------TACATCTACAAGTACATTAATTGGTAGACATTAGATGCACAATTTATTTT----TGAATAAAAATAT
s panPan2.chr3                    77774384 73 + 205426864 TCAAG-----ATAAGA--------TACATCTACAAGTACATTAATTGGTAGACATTAGATGCACAATTTATTTT-----GAATAAAAATAT
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            183478 73 +    245036 TCAAG-----ATAAGA--------TACATCTACAAGTACATTAATTGGTAGACATTAGATGCACAATTTATTTT-----GAATAAAAATAT
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       42643 75 -     87690 CCCAC-----TGAAGA--------TGTACCCACAATTACATTAACTAGTAGAGAT---ACATACAATTTATTTTTGGATTAATGAAAACAT
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35366340 82 + 155834243 ttaaa-----ataaaaTAAAAAGTTACAGCTACAAGGATATTAACTGGTAGACATCAGATGCACAATTTATTTT----TGAATCGAAATAT
i calJac3.chr7                    I 450 I 309
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I
e panTro5.chr9                    41812099 954 + 116767853 I

a score=2784.000000
s hg38.chr14_GL000009v2_random      122875 5 +    201709 GTATT
s panPan2.chr3                    77774457 5 + 205426864 GTATT
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            183551 5 +    245036 GTATT
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       42718 5 -     87690 GTATT
i macFas5.chr5_KE145639_random    C 0 C 0
e calJac3.chr7                    35366422 309 + 155834243 I
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I
e panTro5.chr9                    41812099 954 + 116767853 I

a score=147823.000000
s hg38.chr14_GL000009v2_random      122880 238 +    201709 ACCTACTAATTTAGTAACAAT---ATTACCTAAAGATATAATCTAATAATTTAATACAAAGAA----ACATTATAAGTTCACTAAAATAAATGTTATAGAAATAT-ACTGGGCTGTATTAACCATTTTCCTATTAATATGTGGATTCCACAAATAACTTCATATGAGTATTCCCATGACAGTACATCTTG---------------------------------CTTTTCTATACCTCAACATCATGGAAAG-------------------------------------TGCATCTTGCAACCCAGCAATTTTGGCC
s panPan2.chr3                    77774462 238 + 205426864 ACCTACTAATTTAGCAACAAT---ATTACCTAAAGATATAATCTAATAATTTAATACAAAGAA----ACATTATAAGTTCACTAAAATAAATGTTATAGAAATAT-ACTGGGCTGTATTAACTATTTTCCTATTAATATGTGGATTCCACAAATAACTTCATATGAGTGTTCCCATGACAGTACATCTTG---------------------------------CTTTTCTATACCTGAACATCATGGAAAG-------------------------------------TGCATCTTGCAACCCAGCAATTTTGGCC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            183556 234 +    245036 ACCTACTAATTTAGCAACAAT---ATTACCTAAAGATATAATCTAATAATTTAATACAAAGAA----ACATTGTAAGTTCACTAAAATAAATGTTATAGAAATAT-ACTGGGCTGTATT----ATTTTCCTATTAATATGTGGATTCCACAAATAACTTCATATGAGTGTTCCCATGACAGTACATCTTG---------------------------------CTTTTCTATACCTGAACATCATGGAAAG-------------------------------------TGCATCTTGCAACCCAGCAATTTTGGCC
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       42723 314 -     87690 ACCTACTGATTTAGGAACAATTAATTTGCCCAAAGAAACAATGTAATAATTTAAACCAAAGAAATATACACTTAGTCTTCAATGAAATTAATATTGTAGAAATATAATTCAGCCACATTAACTATTTCACTACTAATATGGAGATTCTAC--ACGATTCCACATAGGTGCTTCCACTAGAACACATCTTGCTTTTATACCTTTGCATCATTGAAAGAATGCATCTTTTATATACCTACGCATCATTGAAAGGATGCATCTTTTATATACCTATGCATCATTGAAAGGATGCATCTTGCAACCCAACATTTTTTGCC
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35366731 233 + 155834243 ACCTGCTGATTTAACAACAGT---ATTACCTAAAGATATAATCTAATAATTTAATACAAAGAA----ACATTATAAGTTCACAAAAACAAATGTTATAGAAGTAT-ACTGGGCTGCATTAACTATTTTCCTATTAATACGTGGATTCCAC----AACTTCATATGAGTGTTTCCATGACAGTGCATCTTG---------------------------------CTTTTCCATACCTG---ATCATGAAAAG----------------------------TT-------TGCATCTTGCAACCCAACAATTTTTGCC
i calJac3.chr7                    I 309 C 0
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I
e panTro5.chr9                    41812099 954 + 116767853 I

a score=218027.000000
s hg38.chr14_GL000009v2_random      123118 236 +    201709 TACG------TTTTTT------AAAATGTACATAATATGTATTTCCTACAgtacacgattctactcatgtttcccaataacacctttccctgtatccaagccctcat--attatgctctgacaataaattgggcttttccatctgacttg-tccagtgaatggacaatggaaaatgtgatgcaaataT-----------------------------CCATTGGTTCTTGCCTTTTTGGACACAGTCATATTGTGAAGAGGTCTGGAGCTACCCTGTTGG
s panTro5.chr9                    41813053 236 + 116767853 TACA------TTTTTA------AAAATGTACATAATATGTATTTCCTACAGTACACCATTGTACTCATGTTTCCCAATAACACCTTTCCTTCTATCCAAGCCCTCAT--ATTATGCTCTGACAATAAATTGGGCTTTTCCATCTGACTTG-TCCAGTGAATGGACAAGGGAAAATGTGATGCAAATAT-----------------------------CCATTGGTTCTTGCCATTTTGGACACAGTCATATTGTGAAGAGGTCTGGAGCTACCCTGTTGG
i panTro5.chr9                    I 954 C 0
s panPan2.chr3                    77774700 241 + 205426864 TACAATTAC-TTTTTT------TAAATGTACATAATATGTATTTCCtgcagtacaccattctactcatgtttcccaataacacctttccctgtatccaagccctcat--attatgctctgacaataaattgggcttttccatctgacttg-tccagtgaatggacaatggaaaatgtgatgcaaataT-----------------------------CCATTGGTTCTTGCCTTTTTGGACACAGTCATATTGTGAGGAGGTCTGGAGCTACCCTGGTGG
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            183790 242 +    245036 TACAATTACTTGTTTT------TAAATGTACATAATATGTATTTCCtgcagtacaccattctactcatgtttcccaataacacctttccctgtatccaagccctcat--attatgctctgacaataaattgggcttttccatctgacttg-tccagtgaatggacaatggaaaatgtgatgcaaataT-----------------------------CCATTGGTTCTTGCCTTTTTGGACACAGTCATATTGTGAGGAGGTCTGGAGCTACCCTGGTGG
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       43037 226 -     87690 TACAAT----TATATAGGGGGGAAAATGTACATATTGTATATTTCTtgggatatactgttttagtaatgtttcctaatgacatgtgtccctgtatctcagacctcatagagtatgctctgataacgaacagggctctgccatttgacttgcttttgccaatgggacatggaaaatatgatgaaaatataggct----------ggaaaagtacttgcccactggtgcttgccttctcgga----------------------------------------
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35366964 263 + 155834243 TACT------TTTTTT------TTAATGTACATAATATATATTTCCTGCAGTACAACATTCTACTCGTGTTTCCCAATAACACCTTTCCCTGTATCCAAGCCCTCAT--ATTATGCTCTGACAATGAATTGGGCTTTTCCATTTGACATG-TCCAATGAATGGACAATGAAAAATGTGAT-CAAATATAGGTTTGCGGTGAGCTGAAAAGTATTTGCCTACTGGTTCTTGCCTTTTTGGACATAGTCACATTGTGAAGAAGTTT-GAGCTACCCTGTTGG
i calJac3.chr7                    C 0 I 278
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=107199.000000
s hg38.chr14_GL000009v2_random      123354 170 +    201709 AGACACAGGGCCTAGCCAAGAGTCACCAcaaaccaccagat-tgtgaaggaaactatcttaaaccaaccaggctcagtcaaggcaccaggtgactaaggcctgttttgtgatccaggcaacacaaatatatcaactacacagctgaacccaccacaccaaaatgcagatcc
s panTro5.chr9                    41813289 170 + 116767853 AGACACAGGGCCTAGCCAAGAGTCACCAGAAACcaccagat-tgtgaaggaaactatcttaaaccaacaaggctcagtcaaggcaccaggtgactaagggctcttctgtgatccaggcaacacaaatatatcaactacccagctgaacccaccacaccaaaatgcagatcc
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77774941 170 + 205426864 AGACACAGGGCCTAgccaagagtcaccacaagccgccagat-tgtgaaggaaactatcttaaaccaaccaggctcagtcaaggcaccaggtgaccaaggcctcttttgtgatccaggcaacgtaaatatatcaactacccagctgaacccaccacaccaaaatgcagatcc
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            184032 170 +    245036 AGACACAGGGCCTAgccaagagtcaccacaagccgccagat-tgtgaaggaaactatcttaaaccaaccaggctcagtcaaggcaccaggtgaccaaggcctcttttgtgatccaggcaacataaatgtatcaactacccagctgaacccaccacaccaaaatgcagatcc
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       43263 123 -     87690 ----------------caagggtcagcatgaaccatcagacatgtg-----------------------------agtgaaggcaccagatgactaaagcctcatctgtgatccagacaacattagcaaaggaaatgcccaggtgaac---acacgccaaaatgtgaatca
i macFas5.chr5_KE145639_random    C 0 C 0
e calJac3.chr7                    35367227 278 + 155834243 I
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=188573.000000
s hg38.chr14_GL000009v2_random      123524 186 +    201709 acagaacttcaaacaaataaaatggtggttgttttttataagctagtaaggtttaattagttccttaaacagcaaatattaactgttacaCCTAAGTGAATAGAATTCA-----ATGTTTTTAACGAAATTATGTAGGGGGAGAAAGTCTTAAATTACAAATCAAATGCAATCAATAGAACTTCACAATCT
s panTro5.chr9                    41813459 191 + 116767853 acagaacttcaaacaaataaaatggtggttgttttttataagccagtaaggtttaattagttccttaaacagcaagtattaactgttacaCCTAAGTGAACAGAATTCACTTCTGTGTTTTAAACAAAATTACGTAGGGGGAGAAAATCTTAAATTACAAATCAAATACAATCAATAGAACTTCGCAATCT
i panTro5.chr9                    C 0 I 1
s panPan2.chr3                    77775111 188 + 205426864 acagaacttcaaacaaataaaatggtggttgttttttataagccagtaaggtttaattagttccttaaacagcaagtattaactgttacaCCTAAGTGAACAGAATTCA---ATATGTTTTTAACAAAATTACGTAGGGGGAGAAAGTCTTAAATTACAAATCAAATACAATCAACAGAACTTCACAATCT
i panPan2.chr3                    C 0 I 1
s gorGor5.CYUI01000160v1            184202 188 +    245036 acagaacttcaaacaaataaaatggtggttgttttttgtaagccagtaaggtttaattagttccttaaacagcaagtattaactgttacaCCTAAGTGAACAGAATTCA---ATATGTTTTTAACAAAATTACGTAGGGGGAGAAAGTCTTAAATTACAAATCAAATACAATCAATAGAACTTCACAATCT
i gorGor5.CYUI01000160v1          C 0 I 1
s macFas5.chr5_KE145639_random       43386 182 -     87690 acagaacttctatcaaataaaacggtcacttctttt--taagccagtga-gtttcattggttcttcagacagaaaatagtaactgatacaCCTAAGCCACCAGAACTCA-----ATGTTTTTAAGAAAATCATGT-GAAGGAGATAATGTGAAATTACTTGTCAAGTACAATCACTAGAACATCACAACCT
i macFas5.chr5_KE145639_random    C 0 I 1349
s calJac3.chr7                    35367505 185 + 155834243 ACAGAATGTCAAACAAATAAAACAGTTGGTTTTTTT--TAAGTCATTAAGGTTTGATTATCTCCTTAAACAGCAAGTATTAACTGTTACACTTAAGCAAACAGAATTCA---GTACGTTTTAAACAAAATTATGT-TGGGGAGAAAATCTTCAAGTACAAGTCAAATACAATCAATAGAACTTCACACTCT
i calJac3.chr7                    I 278 I 1275
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=10262.000000
s hg38.chr14_GL000009v2_random      123710 16 +    201709 AT------GCTATATTTGGTGA
s panTro5.chr9                    41813651 16 + 116767853 AT------GCTAAATTTGGTGA
i panTro5.chr9                    I 1 C 0
s panPan2.chr3                    77775300 22 + 205426864 ATGCTAAAGCTAAATTTGGTGA
i panPan2.chr3                    I 1 C 0
s gorGor5.CYUI01000160v1            184391 22 +    245036 ATGCTAAAGCTAAATTTGGTGA
i gorGor5.CYUI01000160v1          I 1 C 0
s calJac3.chr7                    35368965 16 + 155834243 AT------GCCAAATCTGGTGA
i calJac3.chr7                    I 1275 C 0
e macFas5.chr5_KE145639_random       43568 1349 -     87690 I
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=72480.000000
s hg38.chr14_GL000009v2_random      123726 78 +    201709 TGGACTAGGTTTAATATATCTCAGACACTGGAAACAACAAGGTAAGTTTGAAGGAATGGGACTGTATTTGGAGAGTAT
s panTro5.chr9                    41813667 78 + 116767853 TGGACTAGGTTTATTATATCTCAGACGCTGGAAAAAACGAGCTAAGGTTGAAGGAATGGGACTGTGTTTGGAGAGTAT
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77775322 78 + 205426864 TGGACTAGGTTTAATATACCTCAAACGCTGGAAACAACGAGGAAAGGCTGAAGGAATGGGACCGTGTTTGGAGAGTAT
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            184413 75 +    245036 TGGACTAAGTTTAATATATCTCAAACGCTGGA---AACGAGGAAAGGTTGAAGGAATGGGACTGTGTTTGGAGAGTAT
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       44917 78 -     87690 tAGACTACTTTTAAGAAAGTTCAGCCACTGGAAACAATGAGAAAAGATTGAACGAATTAAAGTGTGTTTACAGAGTAC
i macFas5.chr5_KE145639_random    I 1349 C 0
s calJac3.chr7                    35368981 78 + 155834243 CAGACCAGGTTTAAGATAGCTCAGACACTGGAAACGACTAGTTAAGATTGAAGGAATGAGACTGTGTTTAGAGAGTAC
i calJac3.chr7                    C 0 C 0
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                861242 3888 -   1133132 I

a score=-3244.000000
s hg38.chr14_GL000009v2_random      123804  5 +    201709 TTC-----AA-
s panTro5.chr9                    41813745  5 + 116767853 TTT-----AA-
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77775400  5 + 205426864 TTT-----AA-
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            184488  5 +    245036 TTT-----AA-
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       44995 10 -     87690 TCCACACAAA-
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35369059 10 + 155834243 TTCAGAGAAA-
i calJac3.chr7                    C 0 C 0
s tarSyr2.KE941085v1                865130  5 -   1133132 ------TAAAT
i tarSyr2.KE941085v1              I 3888 I 641
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C

a score=335868.000000
s hg38.chr14_GL000009v2_random      123809 335 +    201709 TCTTTTCAAGTATGACAGGTCACTCCTGCACCCCAGACCACACTTTCAGGCCCCTTCAAA-TAAGGAATATTTCCTAGGT-CCTTGCCTGTTCTTCTCAGCTGAATTCACCTCAACCTTCTGAAAGTTCTTCCAAACCTTCCACTATCACCTAGTCTTTG---------------------------CAAATCTTGTGCATTCCAGGGAGTAGAATTAAT-ATTTCCTGAGCGAGGAAAACTGGGATCTTCACCTGCGACCTTTT---ATCCTCCTCTGAAGCACCAGTGAGA-GGTTAGACCACAGGGCTGTTCTTTCAAGTGCGCTTCTTATTCATAGGGAACCCTCCCTTTCAAACTTTATAACAC
s panTro5.chr9                    41813750 335 + 116767853 TCCTCTCAAGTATGACAGGTCACTCCTGTACCCCAGACCACACTTTCAGGCCCCTTCAAA-TAAGGAATATTTCCTAAGT-CCTTGCCTGTTCCTGTCAGCTGAATTCACCTCAACCTTCTGAAAGTTCGTCCAAACCTTCTACTATCACCTAGTCTTTG---------------------------CAAATCTTGTGCATTCTAGGGAGTAGAATTAAT-ATTTCCTGAGCGAGGAAAACTGGGATCTTCACCTGTGACCTTTT---TTCCTCCTCTGAAGCACCAGTGAGA-GGTTAGACCAGACGGCTGTTCTTTCAAGTGCGCTTCTTATTCATAGGGAACCCTCCCTTTCAAACTTTGTAACAC
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77775405 335 + 205426864 TCTTCTCAGGTATGACAGGTCACTCCTGTACCCCAGACCACACTTTCAGGCCCCTTCAAA-TAAGGAATATTTCCTAGGT-CCTTGCCTGTTCTTCTCAGCCGAATTCACCTCAACCTTCTGAAAGTTCGTCCAAACCTTCCACTGTCACCTAGTCTTTG---------------------------CAAATCTTGTGCATTCTAGGGAGTAGAATTAAT-ATTTCCCGAGCGAGGAAAACTGGGATCTTCACCTGTGACCTTTT---ATCCTCCTCTGAAGCACCAGTGAGA-GGTTAGACCAGAGGGCTGTTCTTTCAAGTGCGCTTCTTATTCATAGGGAACCCTCCCTTTCAAACTTTATAACAC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            184493 335 +    245036 TCTTCTCAGGTATGACAGGTCACTCCTGTACCCCAAACCACACTTTCAGGCCCCTTCAAA-TAAGGAATATTTCCTAGGT-CCTTGCCTGTTCTTCTCAGCCGAATTCACCTCAACCTTCTGAAAGTTCTTCCAAACCTTCCACTATCACCTAGTCTTTG---------------------------CAAATCTTGTGCATTCTAGGGAGTAGAATTAAT-ATTTCCCGAGCGAGGAAAACTGGGATCTTCACCTGTGACCTTTT---ATCCTCCTCTGAAGCACCAGTGAGA-GGTTAGACCAGAGGGCTGTTCTTTCAAGTGCGCTTCTTATTCATAGGGAACCCTCCCTTTCAAACTTTATAACAC
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45005 356 -     87690 TCCTCTCAGGTATAACAGGTTATTTTTCCACTCAGGACAACACTATTAAGTCCCCTCCAG-TAAGTAACATCTCTTTGGC-CCTTGCCTGTCACCCGCAGCCAAACTCCCCTCTTCCTTCTCAATGTTGGTCCAAACCTTCCGCTACCACCCAGCATTTGAGAGCTACTGGATAAGGTATTATCAACCAAATCTGGACCACTCCGGGGAGTGGGAAAATA-ACTGCTTGGGTCATACAAACTGGAATCTTCGCCTGTGACACTTC----CCCTGCTTTGAAGCACCAGTGAGACGGTTAGTCCAGAGAGGTGTTCTTTTAGGTGGGATTCCT----AAAAGGCGCCCTCC--TCCAAACTTTATTATAA
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35369069 338 + 155834243 TCTTCTCAGATATATCAGGTTACTCGTGCACCACAGACCACACTTTCAAGTCCCTTCCAATTAAGTAGTATTTTCTAGGTGCCATGCCTGTTCGTCTCAGCCGAATTCACCTCATCTTTCTGAAAGTTCATCCCAACCTTCCACTATCACCCAGTCTTTG---------------------------CAAATCTTGTGCATTCTAGGGA---GAATTAATAATTTCCTGAGCCAGGAAAACTGGGATCTTCATCTGTGATCCTTTTTTATTCTCCTCTGAAGCACTGATTAGA-GGTTAGACCAGAGGGGTGTTCTTTCAAGTGAGATTCTTATTCATAGGTTATCCTCCCCTTCAAACTTTGTAACAC
i calJac3.chr7                    C 0 I 302
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                865135 641 -   1133132 I

a score=910.000000
s hg38.chr14_GL000009v2_random      124144 1 +    201709 A
s panTro5.chr9                    41814085 1 + 116767853 A
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77775740 1 + 205426864 A
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            184828 1 +    245036 A
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45361 1 -     87690 A
i macFas5.chr5_KE145639_random    C 0 C 0
e calJac3.chr7                    35369407 302 + 155834243 I
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C
e tarSyr2.KE941085v1                865135 641 -   1133132 I

a score=260535.000000
s hg38.chr14_GL000009v2_random      124145 285 +    201709 CAGTTAAGACTGAAGTACCCTTAAGGCTGAAGACCATCATCCAGTACCCCATCTCCCTGGCGGAATCAGTGAGTTCCTCCATGGAAACTAGGTCTC-TATAAACTTCCATAAATGCAATCCAGGAGGA-----CTAGGCAGGTCACACAGTGAAGGAGGGAACCAGAAACTTCACTTGCTAAATAGACACCAGGAAACCCAACTAATACAAACGCCCAGC-TTAAGACTAGAGGCACACGCATTTCGCACTACTCCTCTGGGAATGGGGAACGTCTCCCGAGAACTGTGTGT
s panTro5.chr9                    41814086 286 + 116767853 CAGTTAAGACTGAAGTACCCTTAAGGCTGACGACCATCATCCATTACGCCATCTCCCTCGCGGAATCAGTGAGTTCTTCCCTGGAAACTAGGTCTCGTATAAACTTCTGTAAATGCGACCCAGGAGGG-----CTAGGCAGGTCACACAGTGAAGGAGGGAACCAGAAACTTCACTTGCTAAAGAGACACCAGGAAACCCAACTAATACAAACGCCAAGT-TTAAGACTAGAGGCGCACGCGTTTCACACTACTCCTCTGGGAATGGGGAACGTCTCCCGAGAACTGTGTGT
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77775741 286 + 205426864 CGGTTAAGACTGAAGTACCCTTAAGGCTGAAGACCATCATCCAGTACCCCATCTCCCTCGCGGCATCAGTGAGTTCTTCCCTGGAAACTAGGTCTCGTATAAACTTCTGTAAACGCAACCCAGGAGGA-----CTAGGCAGGTCACACAGTGAAGGAGGGAACCAGAAACTTCACTTGCTAAAGAGACACCGGGAAACCCAACTAATACAAACGCCCAGT-TTAAGACTCGAGGCGCACGCGTTTCGCACTACTCCTCTGGGAATGGGGAACGTCTCCCGAGAACTGTGTGT
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            184829 285 +    245036 CGGTTAAGACTGAAGTACCCTTAAGGCTGAAGACCATCATCCAGTGC-CCATCTCCCTCGCGGCATCAGTGAGTTCTTCCCTGGAAACTAGGTCTCGTATAAACTTCTGTAAACGCAACCCAGGAGGA-----CTAGGCAGGTCACACAGTGAAGGAGGGAACCAGAAACTTCACTTGCTAAAGAGACACCGGGAAACACAACTAATACAAACGTCCAGT-TTAAGACTCGAGGCGCACGCGTTTCGCACTACTCCTCTGGGAATGGGGAACGTCTCCCGAGAACTGTGCGT
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45362 233 -     87690 ----GAAAAC-------------------AGGACCATCATCTGGCACCCC----------------CAA------CTTCCCTAGAAACCAGATCTTGTATAAACTCCTATAAACTAAAGCGGGGATGGGATGCGTAGGAAGGGGACAC------------AAGCAGAATCTTCACTTGCTGAAAAGACACCGGGAAACCCCACTAATACCCTCGCCAGGTAGTAGGAC--GGTGTGCACGCGCTTCGTACTCCTCATCTGGGAATGAGGGGCATCTTCCTAGAACTGTCCGT
i macFas5.chr5_KE145639_random    C 0 I 89
s calJac3.chr7                    35369709 284 + 155834243 cggccAAGACTGAAGAACCCTTAAGACTGAAGACCATCATCCAGTATCCCATCTCCCTCGCAAAATCCGTGACTTCTTCCCTGGAAACTAGGTCTTGTATAAACTTCTGTAAACTCAACCCAGGAGGA-----CTAGGCCGGTCACACAGTGAAGTTTCACACCAGAAACTTCACTCGCCAAAGAGACGCCGGAAAACCCAACGAATACAAACGCCAGATAGTAAGACTCGAGGCGCACGCGCTTCGCA---CGCCTCTGGGAATGTGGGGCATCTCCCGAGAATTGAGTAC
i calJac3.chr7                    I 302 C 0
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                865135 641 -   1133132 I

a score=56992.000000
s hg38.chr14_GL000009v2_random      124430 74 +    201709 -TAGCACGGGGACAGATGGGCAAAC-TGAGCTACATGAGGGTTGGTAACCGGGTCCCTCAGCGGCAGGACAGGAGC
s panTro5.chr9                    41814372 74 + 116767853 -TAGCACTGGGACAGATGGGCAAAT-TGAGCATCATGCGGGTTGGTAACCGGGTCCCTCAGTGGCAGGACAGGAGC
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776027 74 + 205426864 -TAGCACTGGGACAGATGGGCAAAC-TGAGCGTCATGCGGGTTGGTAACTGGGTCCCTCAGTGGCAGGACAGAAGC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185114 74 +    245036 -TAGCACTGGGACAGATGGGCAAAC-TGAGCGTCATGTGGGTTGGTAACCGGGTCCCTCAGCGGCAGGACAGGAGC
i gorGor5.CYUI01000160v1          C 0 C 0
s calJac3.chr7                    35369993 76 + 155834243 TCGCTCCCGGGACAGATGGGCAAACTTGAGTCTCACGCGGGTTGGTAACCGGGTCCCTCAGTGGCAAGGCAGGAGC
i calJac3.chr7                    C 0 C 0
e macFas5.chr5_KE145639_random       45595 89 -     87690 I
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                865135 641 -   1133132 I

a score=33222.000000
s hg38.chr14_GL000009v2_random      124504 31 +    201709 GCGGCCTGCAGACTCCGGGCCCAGGGCCACC
s panTro5.chr9                    41814446 31 + 116767853 GCGGCCTGCAGACTCCGGGCCCAGGGCCACC
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776101 31 + 205426864 GCAGCCTGCAGACTCCGGGCCCAGGGCCACC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185188 31 +    245036 GCAGCCTGCAGACTCCGGGCCCAGGGCCACC
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45684 30 -     87690 GCGGCCTGCAGATTCC-GTCCCCGCGCCACC
i macFas5.chr5_KE145639_random    I 89 C 0
s calJac3.chr7                    35370069 31 + 155834243 CCAGCCTTCAGACTCCGGCCACAGGGCCACT
i calJac3.chr7                    C 0 C 0
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                865135 641 -   1133132 I

a score=8059.000000
s hg38.chr14_GL000009v2_random      124535 6 +    201709 AGCCTC
s panTro5.chr9                    41814477 6 + 116767853 GGCCTC
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776132 6 + 205426864 GGCCTC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185219 6 +    245036 CGCCTC
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45714 6 -     87690 GGCTTC
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35370100 6 + 155834243 GACCTC
i calJac3.chr7                    C 0 C 0
s tarSyr2.KE941085v1                865776 6 -   1133132 GGTCTC
i tarSyr2.KE941085v1              I 641 I 14
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C

a score=1500.000000
s hg38.chr14_GL000009v2_random      124541 1 +    201709 G
s panTro5.chr9                    41814483 1 + 116767853 G
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776138 1 + 205426864 G
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185225 1 +    245036 G
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45720 1 -     87690 G
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35370106 1 + 155834243 G
i calJac3.chr7                    C 0 C 0
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C
e tarSyr2.KE941085v1                865782 14 -   1133132 I

a score=2019.000000
s hg38.chr14_GL000009v2_random      124542 3 +    201709 CCT-
s panTro5.chr9                    41814484 3 + 116767853 CCT-
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776139 3 + 205426864 CCT-
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185226 3 +    245036 CCT-
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45721 3 -     87690 CCC-
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35370107 3 + 155834243 CCT-
i calJac3.chr7                    C 0 C 0
s tarSyr2.KE941085v1                865796 3 -   1133132 -CTC
i tarSyr2.KE941085v1              I 14 I 13
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C

a score=14682.000000
s hg38.chr14_GL000009v2_random      124545 13 +    201709 ACCCACTCCTGTG
s panTro5.chr9                    41814487 13 + 116767853 ACCCACTCCTGCG
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776142 13 + 205426864 ACCCGCTCCTGCG
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185229 13 +    245036 ACCCGCTCCTGCG
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45724 13 -     87690 ACCCGCTCCGGCG
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35370110 13 + 155834243 ACCAGCTCCGGCG
i calJac3.chr7                    C 0 C 0
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                865799 13 -   1133132 I

a score=4200.000000
s hg38.chr14_GL000009v2_random      124558 2 +    201709 CC
s panTro5.chr9                    41814500 2 + 116767853 CC
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776155 2 + 205426864 CC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185242 2 +    245036 CC
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45737 2 -     87690 CC
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35370123 2 + 155834243 CC
i calJac3.chr7                    C 0 C 0
s tarSyr2.KE941085v1                865812 2 -   1133132 CC
i tarSyr2.KE941085v1              I 13 I 22
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C

a score=17190.000000
s hg38.chr14_GL000009v2_random      124560 16 +    201709 TCTGGAACCCGCTTCA
s panTro5.chr9                    41814502 16 + 116767853 TCTAGAACCCGCTTCG
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776157 16 + 205426864 TCTAGAACCCGTTTCA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185244 16 +    245036 TCTAGAACCGGCTTCA
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45739 16 -     87690 TCTGGAACTGGCTTCA
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35370125 16 + 155834243 TCTGGAACCCGCTTCT
i calJac3.chr7                    C 0 C 0
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                865814 22 -   1133132 I

a score=21189.000000
s hg38.chr14_GL000009v2_random      124576 22 +    201709 CTGCTGGGACCCCACGTCTGTC
s panTro5.chr9                    41814518 22 + 116767853 CTGCCGGGACCCCACGCCTGTC
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776173 22 + 205426864 CTGCCGGGATCCCACGCCTGTC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185260 22 +    245036 CTGCCGGGACCCCACGCCTGTC
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45755 22 -     87690 GTGCCGAGATCCCACGCCCGCC
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35370141 21 + 155834243 GTGCCGGG-CCCCGCAACTGTT
i calJac3.chr7                    C 0 C 0
s tarSyr2.KE941085v1                865836 20 -   1133132 CTGACAG--CGTCGCGTCCGAC
i tarSyr2.KE941085v1              I 22 I 209
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C

a score=86048.000000
s hg38.chr14_GL000009v2_random      124598  83 +    201709 CTCCC-----------------AGCCCCCGCCAGGGTCCACGGCCCGCAAATGCACGTCAGGCCCCTCCTG--CCCGCGATGCGCCCACGCGTCTGCCCCCA
s panTro5.chr9                    41814540  83 + 116767853 CTCCC-----------------AGCCCCCGCCAGGGTCCGCGGCCCACACCTGTCCTTCAGGCCCTGCCCG--CCCGCGATGCGCCCACGTGTCTGCTCCCA
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776195  83 + 205426864 CTCCC-----------------AGCCCTCGCCAGGGTCCGCGGCCCGCACCTGCACTTCAGGCCCTGCCCG--CCCGCGATGCGCCCACGCGTCTGCTCCCA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185282  83 +    245036 CTCCG-----------------AGCCCCCGCCAGGGTCCGCGGCCCGCACCTGCACTTCAGGCCCTGCCCG--CCCGCGATGCGCCCACGCGTCTGCTCCCA
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45777 102 -     87690 CTCCCAGCAGCGCCGCCCTTTTAGCCCCAGCGCTAGTCCGCCGCCCGCACCTGCGCGTCAGGCCCCGCCCTCCCCCGAGATGTGCCCACGCCTCTGCTCCCA
i macFas5.chr5_KE145639_random    C 0 I 1
s calJac3.chr7                    35370162  81 + 155834243 CTCCC-----------------A--CCCCGCCAGGTTCCGCTGCCCGCACCTGCACGTCAGGCCCCGCCCG--CCCGCGATGCGCCCACGCTTCTGCTCCCA
i calJac3.chr7                    C 0 C 0
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C
e tarSyr2.KE941085v1                865856 209 -   1133132 I

a score=2100.000000
s hg38.chr14_GL000009v2_random      124681 1 +    201709 C
s panTro5.chr9                    41814623 1 + 116767853 C
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776278 1 + 205426864 C
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185365 1 +    245036 C
i gorGor5.CYUI01000160v1          C 0 C 0
s ponAbe2.chr3                    42341596 1 + 202140232 C
i ponAbe2.chr3                    N 0 N 0
s macFas5.chr5_KE145639_random       45880 1 -     87690 C
i macFas5.chr5_KE145639_random    I 1 C 0
s calJac3.chr7                    35370243 1 + 155834243 C
i calJac3.chr7                    C 0 I 1
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C
e tarSyr2.KE941085v1                865856 209 -   1133132 I

a score=84323.000000
s hg38.chr14_GL000009v2_random      124682 88 +    201709 AAATGGGGAACACTGGTCTGGCC-CCCCGGGATCCCCCGAGGCCCACAGGTTCCT-CCTCGCCCTCGCACCTACCCACAGGGACATAGAA
s panTro5.chr9                    41814624 88 + 116767853 AACTAGGGAACACTGGTCTGGCC-CCCCGGGATCCCCTGAGGCCCACGGGTTCCT-CTTCGCCCTTGCACCGACCCGCAGGGACATAGAA
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776279 88 + 205426864 AACTGGGGAACACTGGTCCGGCC-CCCCGGGATCCCCCGAGGCCCACGGGTTCCT-CTTCGCCCTCGCACCGACCCGCAGGGACATAGAA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185366 87 +    245036 AACTGGGGAACACTGGTCCGGCC-CCCCGGGATCCCCCG-GGCCCACGGGTTCCT-CTTCGCCCTCGCACCGACCCGCAGGGACATACAA
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45881 90 -     87690 AACTGGGGCACGTCGGCCCCGCCTCCCTATGGTGCCTCCAAGCCCGCTGTGTCCTGTTTCATCCTACCACCAACCTGCAGGGATGAACAC
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35370245 88 + 155834243 AATTGGGAGACACCGGTCCGGCC-CCCCAGGATTCCCCGAGGCCCGCGGGTTCCT-CTTCGCTCTCGCACCGACCCGCAGGGACACAAAA
i calJac3.chr7                    I 1 C 0
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                865856 209 -   1133132 I

a score=4565.000000
s hg38.chr14_GL000009v2_random      124770 8 +    201709 --CCAAGCCC
s panTro5.chr9                    41814712 8 + 116767853 --CCAAGCCC
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776367 8 + 205426864 --CCAAGCCC
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185453 8 +    245036 --CCAAGCCC
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45971 8 -     87690 --CCCAACCC
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35370333 8 + 155834243 --CACAACCC
i calJac3.chr7                    C 0 C 0
s tarSyr2.KE941085v1                866065 8 -   1133132 TACAGGGT--
i tarSyr2.KE941085v1              I 209 I 79
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C

a score=67165.000000
s hg38.chr14_GL000009v2_random      124778 84 +    201709 CAGG----CCTGCTCAGCTACACGACCACCGCTGGGATCCGCACT--TCCGGAGGAAAATGGCGAAGTGGGCGGGGTGGCACATGCGTAG
s panTro5.chr9                    41814720 84 + 116767853 CAAG----CCGGCCCAGCTACAGGACCGCCTCTGGGCGCCGCAAT--TCCGGAGGAAAATGGCGGAGTGGGCCGGGCGGCGCACGCGCAG
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776375 84 + 205426864 CAAG----CTGGCCCAGCTACAAGACCGCCTCTGGGTGCCGCACT--TCCGGAGGAAAATGGCGGAGTGGGCGGGGCGGCGCATGCGCAG
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185461 83 +    245036 CAGG----CTGGCCCAGCTACAAGACCGCCTCT-GGTGCCGCACT--TCCGGAGGAAAATGGCGGGGTGGGCGGGGTGGCGCATGCGCAG
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       45979 89 -     87690 CAGAGCTTCCAGAGCAGCCTCTGGACGGCAGCA-GGAGCCGGGTTTCTCTGGCGGAAGATGGTGGCATAGGCGGGGCGGCGCATGCGCAA
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35370341 84 + 155834243 CAGC----CCTGCCCAGCTGCATAAGGACCTCTTGAATCCCCACT--GTCGGAGGAAAATGGCGGAGTAGGCGGGGCGGCTCATGCGCAG
i calJac3.chr7                    C 0 C 0
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C
e tarSyr2.KE941085v1                866073 79 -   1133132 I

a score=1911.000000
s hg38.chr14_GL000009v2_random      124862 1 +    201709 A
s panTro5.chr9                    41814804 1 + 116767853 A
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776459 1 + 205426864 A
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185544 1 +    245036 A
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       46068 1 -     87690 A
i macFas5.chr5_KE145639_random    C 0 C 0
s rhiRox1.KN299240v1                319066 1 -   1849528 A
i rhiRox1.KN299240v1              N 0 C 0
s calJac3.chr7                    35370425 1 + 155834243 A
i calJac3.chr7                    C 0 C 0
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C
e tarSyr2.KE941085v1                866073 79 -   1133132 I

a score=1314.000000
s hg38.chr14_GL000009v2_random      124863 1 +    201709 G
s panTro5.chr9                    41814805 1 + 116767853 G
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776460 1 + 205426864 G
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185545 1 +    245036 G
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       46069 1 -     87690 G
i macFas5.chr5_KE145639_random    C 0 I 1
s calJac3.chr7                    35370426 1 + 155834243 G
i calJac3.chr7                    C 0 I 2
s tarSyr2.KE941085v1                866152 1 -   1133132 A
i tarSyr2.KE941085v1              I 79 C 0
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C
e rhiRox1.KN299240v1                319067 0 -   1849528 C

a score=-4437.000000
s hg38.chr14_GL000009v2_random      124864 7 +    201709 AG--AACCT-
s panTro5.chr9                    41814806 9 + 116767853 AGAAAAGCT-
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776461 9 + 205426864 AGAAAAGCT-
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185546 9 +    245036 AGAAAAGCT-
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       46071 2 -     87690 -------CC-
i macFas5.chr5_KE145639_random    I 1 I 12
s papAnu3.chrUn_NW_003902834v1       25678 2 +    231459 -------CC-
i papAnu3.chrUn_NW_003902834v1    N 0 N 0
s rhiRox1.KN299240v1                319067 3 -   1849528 ------GCC-
i rhiRox1.KN299240v1              C 0 I 11
s calJac3.chr7                    35370429 9 + 155834243 AAAAGAGCT-
i calJac3.chr7                    I 2 C 0
s tarSyr2.KE941085v1                866153 7 -   1133132 ---GGGACCG
i tarSyr2.KE941085v1              C 0 N 0
e nomLeu3.chr21_GL397661_2_random    95072 0 -    139590 C

a score=23594.000000
s hg38.chr14_GL000009v2_random      124871 30 +    201709 GGTTCCCAAGGTCCT-TGATGGTAAACATCA
s panTro5.chr9                    41814815 29 + 116767853 GGTTCCCAAGGTCCT-TGATGGT-AACATCA
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776470 29 + 205426864 GGTTCCCAGGGTCCT-TGATGGT-AACATCA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185555 29 +    245036 GGTTCCCAAGGTCCT-TGATGGT-AACATCA
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       46085 30 -     87690 CCTTCCCACCGTCCAGTGCTGGT-GACGTCA
i macFas5.chr5_KE145639_random    I 12 C 0
s rhiRox1.KN299240v1                319081 26 -   1849528 CCTGTCCATGGTCCTGGGCTG-----CGTTG
i rhiRox1.KN299240v1              I 11 N 0
s calJac3.chr7                    35370438 30 + 155834243 GGTTCCCAAGGTTCTTTGCTGGT-AACATCA
i calJac3.chr7                    C 0 C 0
e nomLeu3.chr21_GL397661_2_random    95072  0 -    139590 C

a score=471214.000000
s hg38.chr14_GL000009v2_random      124901 503 +    201709  
s panTro5.chr9                    41814844 511 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77776499 508 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            185584 511 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       46115 503 -     87690  
i macFas5.chr5_KE145639_random    C 0 C 0
s calJac3.chr7                    35370468 551 + 155834243  
i calJac3.chr7                    C 0 C 0
e nomLeu3.chr21_GL397661_2_random    95072   0 -    139590 C

a score=41027.000000
s hg38.chr14_GL000009v2_random      125404 27 +    201709 ggcctcccaaagtgctgggattacagg
s panTro5.chr9                    41815355 27 + 116767853 ggcctcccaaggtgctgggattacaag
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77777007 27 + 205426864 ggcctcccaaagtgctgggattacagg
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            186095 26 +    245036 ggcctcccaaaatgct-ggattacagg
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    95072 27 -    139590 agcctcccaaagtgctgggattacagg
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s macFas5.chr5_KE145639_random       46618 27 -     87690 ggccttcaaaagtgctggtgttgcggg
i macFas5.chr5_KE145639_random    C 0 I 15414
s calJac3.chr7                    35371019 27 + 155834243 ggcctccgaaagtgctgggactacagg
i calJac3.chr7                    C 0 C 0

a score=261436.000000
s hg38.chr14_GL000009v2_random      125431 217 +    201709 cgtgagccaccgcgcccagccCTCAAGTCTATTTTTTATAGATGCATTCGAAAGCATG-AAAAAAATCATGTCTCTATTTTACTTTAAATTTTTAAAAACACAACTAATGAATATGGTAATTCTCTTCCAATCTGTTATCTTTTCTCTCACGAAGCTAATTTGTGAGCTTTCAAT--------TTACACAGTTAGAAAAAATTGCTCTAGTGTATATACTAGGATA
s panTro5.chr9                    41815382 216 + 116767853 cgtgagccactgcgcccagccCTCAAGTCTATTTTTTATAGATGCATTCGAAAGCATG-AAAAAAATCATGTCTCTATTTTACTTTAAAATTTTAAAAACACAACTAATGAATATGGTAATTCTCTTCCAATCCGTTATCTTTTCTCTCACTAAACTAATTTGTGAGCCTTCAAT--------TTACACAGTTAGAAAATA-TGCTTTAGTGCATATACTAGGATA
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77777034 216 + 205426864 cgtgagccactgcgcccagccCTCAAGTCTATTTTTTATAAATGCATTCGAAAGCATG-AAAAAAATCATGTCTCTATTTTACTTTAAAATTTTAAAAACACAACTAATGAATATGGTAATTCTCTTCCAATCCGTTATCTTTTCTCTCACTGAACTAATTTATAAGCCTTCAAT--------TTACACAGTTACAAAAAA-TGCTCTAGTGCATATACTGGGATA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            186121 216 +    245036 cgtgagccactgcgcccagccCTCAAGTCTATTTTTTATAAATGCATTCGAAAGCATG-AAAAAAATCATGTCTCTATTTTGCTTTAAAATTTTAAAAACACAACTAATGAATATGGTAATTCCCTTCCAATCTGTTACCTTTTCTCTCACTAAACTAATTTATAAGCCTTCAAT--------TTACACAGTTACAAAAAA-TGCTCTAGTGCATATACTGGGATA
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    95099 216 -    139590 tgtgagccaccgcacccagccCTCAAGTCTATTTTTTATAGATGCATTTGAAAGCATG-GAAAAAATCATGTCTCTATTTTACTTTAAATTTTTAAAAACACAACTAATGAATATGGTAATTCTCTTCCAATCCATTATCTTTTCTCTCATTAAACAAATTTGTGAGCCTTCAAT--------TTACACAGTTAGAAAAAA-TGCTGTAGTGTATGTACTAAGATA
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35371046 225 + 155834243 catgagccaccacgcccagccCCCAAGTCTATTTTTTATAGATGCATTAGAAGGCATGAAAAAAAATCATGTCTGTATTTTACTTTAAATTTTTCAAAATACAAATAATGAATATGGTAATTCTCTTCCAATCGGTTGTCTTTTCTCTCACTAAACTAATTTGTGAGCCTTCAATAGATTATATTACATAGTTAGAAAAAT-TGCTCTAGTGTATATACTGGGATA
i calJac3.chr7                    C 0 I 667
e macFas5.chr5_KE145639_random       46645 15414 -     87690 I

a score=59170.000000
s hg38.chr14_GL000009v2_random      125648 44 +    201709 AAATAACAGGGTCATAAGACAAGTGCACTCCATAATCTTTGTGA
s panTro5.chr9                    41815598 44 + 116767853 AAATAACAGGGTCGTAAGACAGGTGCACTCCATAATCTTTGTGA
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77777250 44 + 205426864 AAATAACAGGGTCATAAGACAGGTGCACTCCATAATCTTTGTGA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            186337 44 +    245036 AAATAACAGGGTCATAAGACAGGTGCACTCCATAATCTTTGTGA
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    95315 44 -    139590 AAATAATAGGGTCATAAGACAGGTGCACTCCATAATCTTTGTGA
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35371938 44 + 155834243 aaataaCAGGGTCATAAGACAGGCACACTCCATAATCTTTGTGA
i calJac3.chr7                    I 667 I 983
e macFas5.chr5_KE145639_random       46645 15414 -     87690 I

a score=579159.000000
s hg38.chr14_GL000009v2_random      125692 494 +    201709 CAACTTACACTTCCAGTGTCTGATGAACATTTGCCCATAAACTCCCACGTTTCATCCATCCATCCATCAGTCAAATCTACCTATC----TTTATTTATTTATTGTGCGAAATACCTGAACTTTGCCTTTCCTTCCCTGATTTCTGCCACAAACTAGGCAAGGAGTTCTGCCTAGGGGTTTTTCAGAGCTCCGGCTACCACCGAGGTTCCTAACAGGGAAATTGCCAGCTTGAATGCTTGGGGTTGATGTGGGAGTGCGTGTGAAACGGGTGTGGGGTGAAAGGGCAGTGAACTTTGTAGGTGGGTAGATGGGGGTGTGAAGGGCTTTCAGGTAAGAGGCACAGAGgaaactgggagaggcagcgaaagcacttcacgcctcagataaccagaagatgctcccaccagcgccatgacagtttgccagtgccatggcaacacaggaagtccccaccccttgccatggaaacagctggaagttactgccca-tttctagcta
s panTro5.chr9                    41815642 492 + 116767853 CAACTTACACTTCCAGTGTCTGATAAATATTTGCCCGTAGACTCCCACGTTTCATCCATCCATCCGTCAATCAAATCTACCTATC----TTTATTTATTTGTTATGAGAAAGACCTGAAATTTGCCTTTCCTTCCCTGATTTCTGCCACAAACTAGGCAAGGAGTTCTGCCTAGGAGTTTCTCAGAGCTCCGGCTACCACCGAGGTTCCTAAC-GGGAAA-CGCAGGCTTGAATGCTCAGGGTTGATGTGGGAGTGCGTGTGAAACAGGGGTGGGGTGAAAGAGCAGTGACGTTTGTAGGTGGGCAGATGGGGGTGTGATGGGCTTTCAGGTAAGAGGCATGCAGgaaactgggagaggcagcgaaagcacctcacgcctcagatcaccagaagacaatcccaccagtgccatgacagtttgccaatgccatggcatcacgagaagtccccaccccttgccatggaaacagatggaagttactgccca-tttctaccta
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77777294 493 + 205426864 CAACTTACACTTCCAGTGTCTGATAAATATTTGCCCATAAACTCCCACGTTTCATCCATCCACCAATCAATCAAATCTAGCTATC----TTTGTTTATTTATTGTGAGAAAGACCTGAACTTTGCCTTTCCTTCCCTGATTTCTGCCACAAACTAGGCAAGGATTTCTGCCTAGGGGTTTCTCAGAGCTCCGGCTACCACCGAGGTTCCTAACAGGGAAA-CGCAGGCTTGAATGCTCAGGGTTGATGTGGGAGTGCGTGTGAAACGGGGGTGGGGTGAAAGGGCAGTGAAGTTTGTAGGTGGGCAGATGGGGGTGTGAAGGGCTTTCAGGTaagaggcacgcaggagactgggagaggcagcgaaagcacctcacgcctcagatcaccagaagacgctcccaccagcgccgtgacagtttgccaatgccacggcagcacgggaagtccccaccccttgccatggaaacagctggaagttactgccca-tttcTAGCTA
i panPan2.chr3                    C 0 I 20
s gorGor5.CYUI01000160v1            186381 493 +    245036 CAACTTACACTTCCAGTGTCTGATAAATATTTGCCCATAAACTCCCACGTTTCATCCATCCACCAATCAATCAAATCTAGCTATC----TTTATTTATTTATTGTGAGAAAGACCTGAACTTCGCCTTTCCTTCCCTGATTTCTGCCACAAACTAGGCAAGGATTTCTTCTTAGGGGTTTCTCAGAGCTCCGGCTACCACCGAGGTTCCTAACAGGGAAA-CGCAGGCTTGAATGCTCAGGGTTGATGTGGGAGTGCGTGTGAAACGGGGGTGGGGTGAAAGGGCAGTGAAGTTTGTACGTGGGCAGATGGGGGTGTGAACGGCTTTCAGGTAAGAGGCACGCAGgagactgggagaggcagcgaaagcacctcacgcctcagatcaccagaagacgctcccaccagtgccgtgacagtttgccaatgccacggcagcacgggaagtccccaccccttgccatggaaacagctggaagttactgccca-tttctagcta
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    95359 493 -    139590 CAACTTACACTTCCAGTGTCTTACAAATATTTTCCCATAAACTCCCACGGTTcatccatccatccatcaatcaatcaaatctacc----tatctttatttatTGTGAGAAAGACCTGAACTTTGCCTTTCCTTCCCTGTTTTCTGCCACAAACTAGGCAAGGAGTTCTGCCTAGGGGTTTCTCAGAGCTCCAGCTACCACCGAGTTTCCTAACAGGGAAA-TGCCAGCTTGAACATTCAGGGTTGATGTTGGAGTGCATGTGAAATGGGGGTGGGGTGAAAGGGCAGTGAAGTTTGTAGGTGGGCAGTTGGGGGTGTGAAGGGCTTTCAGGTAAGAGGCACGCAGgaaactgggagaggcagcgaaagcacctcacacctcagatcaccagaagatgctcccaccagcgccgtgacagtttgccaatgccatggcagcatgggaagtccccaccccttgccatgaaaacagctggaagttactgccca-tttctagcta
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35372965 484 + 155834243 CAACTTACACTTCCAGTGTCTGATAAATATTTGCCCATAAATTCCCACATTTCATCAATCC------------AGTCTACCCATCTTTATTTATTTATTTATTGTGAGAAAGACCTGAACTTTGCCTTCCTGTCCCTGCTTTCTGTCACAAACTAAGCAAGGCATTCTGCACAGGGGTTCCTCGGAGCTCCGGCTACCACCGAGGTTCCTAACAGAGAAG-AGCTGGCTTGAATGCTCAGGGTTGATGTGGGAGTTCTTGTGAAACGGGGGTAGGATG-AAGGGCAGTGACATTTGTGGGTGGGCAGATGGGGGTGTGAAGGGCTTTAAGGTAAGAGGCACACAGGAAACTGGGAAACGCAGTGAAAGCACCTCAGGCCACAGACCAccagaagatgttcccaccagtg-cgtgacagtttgccagtgcctgggcagcatggaaaatcactgccccttgccatggaaacacctgggagttactgcccattttctagcta
i calJac3.chr7                    I 983 C 0
e macFas5.chr5_KE145639_random       46645 15414 -     87690 I

a score=238104.000000
s hg38.chr14_GL000009v2_random      126186 320 +    201709 tttctgagtaacccgccccttaattagcatgtcattaaaagtgaattataaaaatgactacaagccacccttaggctgctactctgggagcacaacccacagagggctccctgccctgcaggagcggacgcagggctgtaacaccgccaatgcctccatagagctgctttattccaccacaggcttgctttt--------------ggattccttcctgagcgacgccaagaacctgcccTTCCTCAGTGTGACTCTTGCCTAAAATCTATCCCTGGTTTTCTCTTTTCCTAAGCATGCCCTGACTTGTTCTTTCATCTCCTCTGAACTTGCAA
s panTro5.chr9                    41816134 320 + 116767853 tttctgaataacccgccccttaattagcatgccattaaaagtgaattataaaaatgactacaagccacccctaggctgctgctctgggagcacaacccacggagggctccctgccctgccggagtggacgcagggctgtaacaccgccaatgcctccgtagagctgctttcttccaccacaggcttgctttt--------------ggatttcttcctgagcgacgccaagaacctgcccTTCCTCAATGTGACTCTTGCCTAAAACCTATCCCTGGTATTCTCTTTTCCTAAGCATGCCCTGACTTGTTCTTTCATCTCCTCTGATCTTGCAA
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            186874 320 +    245036 tttctgaataacccgccccttaattagcatgccattaaaagtgaattataaaaatgactgcaagccacccccaggctgctactctgggagcacaacccacggagggcttcctgccctgcaggagtggacgcagggctgtaacaccgccagtgcctccatagagccgctttcttccaccacaggcttgctttt--------------ggattccttcctgagcgacgccaagaacctgcccTTCCTCAGTGTGACTCTTGCCTAAAACCTATCCCTGGTTTTCTCTTTTCCTAAGCATGCCCTGACTTGTTCTTTCATCTCCTCTGATCTTGCAA
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    95852 334 -    139590 cttctgagtaacccgccccttaattagcatgccattaaaaatgaattataaaaatgactgcaacccacccctaggctgctactctgggaacacaacccacggagggctccctgccctgcaggagtggccgcagggctgtaacaccgccaatgcctccatagagctgctttcttccaccacaggcttgcttttgaattccttcctgagAATTCCTTCCTGAGAGACGCCAAGAACCTGCCCTTCCTCAGTGTGACTCTTGCCTCAAACCTATCCCTGGTTTTCTCTTTTCCTAAACATGCCCTGACTTGTTCTTTTATCTCCTCTGATCTTGCAA
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s calJac3.chr7                    35373449 298 + 155834243 tttctgaataacccgccccttaattagcatgcaattaaaag-------------tgactacaaaccaccc-tgggctgctgccctggtagtacaacctgtgcagtgctcccggctctgca------gtcagaaagctgccacactgccaatgcct-cgtagagccacgttcttccgccgcaggcttgccttt--------------gaattccttcctgagcaacaccaagaacctgcccTTCATCAGTGTGACTCTTGCCTAAAACCTGTTCTTGGTTTTCTCTTTTACCAAGTATCCCCTGCCTTG-TCCCCCATTGTCTCTGATCTCGCAA
i calJac3.chr7                    C 0 C 0
e macFas5.chr5_KE145639_random       46645 15414 -     87690 I
e panPan2.chr3                    77777787  20 + 205426864 I

a score=1417508.000000
s hg38.chr14_GL000009v2_random      126506 1257 +    201709  
s panTro5.chr9                    41816454 1233 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77777807 1247 + 205426864  
i panPan2.chr3                    I 20 C 0
s gorGor5.CYUI01000160v1            187194 1233 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    96186 1241 -    139590  
i nomLeu3.chr21_GL397661_2_random C 0 I 9356
s calJac3.chr7                    35373747 1227 + 155834243  
i calJac3.chr7                    C 0 C 0
e macFas5.chr5_KE145639_random       46645 15414 -     87690 I

a score=76235.000000
s hg38.chr14_GL000009v2_random      127763 91 +    201709 acatcaaagaaagtagaaaaacttcaaataaacaacctaataatgcatcttaaatagttagaaaagcaagagcaaaccaaaaccaaaatta
s panTro5.chr9                    41817687 91 + 116767853 atatcaaaaaaagtagaaaaacttcaaataaacaacctaataatgcatcttaaataattagaaaagcaagagcaaaccaaaaccaaaatta
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77779054 91 + 205426864 acatcaaaaaaagtagaaaagtttcaaataaacaacctaataatgcatcttaaataattagaaaagcaagagcaaaccaaaaccaaaatta
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            188427 91 +    245036 acatcaaaaaaagtagaaaagcttcaaataaacaacctaataatgcatcttaaataattagaaaagcaagagcaaaccaaaaccaaaatta
i gorGor5.CYUI01000160v1          C 0 C 0
s calJac3.chr7                    35374974 87 + 155834243 acatcaaaaaaagtagaaaaacttcaaatgaacaaactaataatgcatcttaaataattagaa----aagagcaaaccaaatccaaaatta
i calJac3.chr7                    C 0 N 0
e macFas5.chr5_KE145639_random       46645 15414 -     87690 I
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I

a score=322190.000000
s hg38.chr14_GL000009v2_random      127854 669 +    201709  
s panTro5.chr9                    41817778 629 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77779145 649 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            188518 648 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
e macFas5.chr5_KE145639_random       46645 15414 -     87690 I
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I

a score=77898.000000
s hg38.chr14_GL000009v2_random      128523 120 +    201709 ctggatccaa---------tggcttcactgattaattttaccaaacactgaaggaagaattactatcaatcctactcaaactattccaaaaaacagagaagtctgtaatatttcca-----------------------------------------------------------------------------------aaatc---------------------attctatg
s panTro5.chr9                    41818407 120 + 116767853 ctagattcaa---------tggcttcactgattaattttaccaaacatcgaaggcagaattactatcaatcctactcaaactattccataaaacagagaatgctgtagtatttcca-----------------------------------------------------------------------------------aactc---------------------atcctatg
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77779794 129 + 205426864 ctggatccaatggcttcactggcttcactgattaatttcaccaaacattgaaggcagaattactatcaatcctactcaaactattccaaaaaacagagaaggctgtagtatttcca-----------------------------------------------------------------------------------aactc---------------------atcctatg
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            189166 128 +    245036 ct-gatccaatggcttcaatggcttcactgattaattttaccaaacattgaaggcagaattactatcaatcctactcaaactattccaaaaaacagagaaggctgtagtatttcca-----------------------------------------------------------------------------------aactc---------------------atcctatg
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       62059 224 -     87690 cTggatccag---------tggcttcactgattaattttaccaaacatctaaggaagaattactatcaatcctactcaaactattccagaaaacagagaaggctgttgtgtttccaaactcattctgtgaggctactattaccctgaaactaaaaccaaagaaactacaggtcaatatcactgataaacattgatccagaaatccccaatactagcaaaaaccaaattcaaca
i macFas5.chr5_KE145639_random    I 15414 I 7
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I

a score=653837.000000
s hg38.chr14_GL000009v2_random      128643 373 +    201709 aaaaagaccattcatcgtgtctaagtgggattcatcccaaggatgccaac--atggttcaacatatgcaaatcaatcaatgtgacacatcatatcaacagaatgaaggacaaaaaacatatggtaatttcaattgatgctgaaaagcatttaataaaatccaacttccctgtgataaaaagaaaccccc-aaaaaaactagatttagaaggaacataccacaacacaataaaaaccatatgcaacaaaccctcagccagtatcattctgaacagagataacctgaaagcctttcttcta--------agatctggaacaaggcaagaatgtccacttccaacaatgttactcaacatagtactggaagtcctagctagagcaat
s panTro5.chr9                    41818527 374 + 116767853 aaaaagaccattcatcatgtctaagtgggatttatcccgaggatgccaac--atggttcaacatatgcaagtcaatcaatgtgacacaccatatcaacagaatgaaggacaaaaaccatatgataatttcaattgatgctgaaaagcatttaataaaattcaacatccctgtgataaaaagaaaccctcaaaaaaaactagatatagaaggaacataccacaacacaataaaaaccatatgcaacagacccacagccagtatcatcctgaacagggaaaagctgaaagcctttcttcta--------agatctggaacaagacaagaatgtccacttccaacactgttactcaacatagtactggaagtcctagctagagcaat
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77779923 373 + 205426864 aaaaagaccattcatcatgtctaagtgggatttatcccgaggatgccaac--atggttcaacatatgcaaatcaatcaatgtgacacaccatatcaacagaatgaaggacaaaaaccatatgataatttcaattggtgctgaaaagcatttaataaaatccaacatccctgtgataaaaagaaaccctc-aaaaaaactagatatagaaggaacataccacaacacaataaaaaccatatgcaacagacccacagccagtatcatcctgaacagggaaaagctgaaagcctttcttcta--------agatctggaacaagacgagaatgtccacttccaacactgttactcaacatagtactggaagtcctagctagagcaat
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            189294 374 +    245036 aaaaagaccattcatcatgtctaagtgggatttatcccgaggatgccaac--atggttcaacatatgcaaatcaatcaatgtgacacatcatatcaacagaatgaaggacaaaaaccatatgataatttcaattgatgctgaaaagcatttaataaaatccaacatccctgtgataaaaagaaaccctcaaaaaaaactagatatagaaggaacataccacaacacaataaaacccatatgcaacagacccgcagccagtatcatcctgaacagggaaaagctgaaagcctttcttcta--------agatctgggacaagacaagaatgtccacttccaacactgttactcaacatagtactggaagtcctagctagagcaat
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       62290 382 -     87690 aaaaagaccattcatcatgtctaagtgggatttatcccaaggatggcagcaaatggttcaacacatgtcaatcaatcagtgtgacacatcacatcaacagaatgaaggacaaaaaccgtatgataatttcaattgatgctg-aaagcttttaataaaatccaacatccctatgataaaaagaaaccctt-aaaaaaactagacatagaaggaacataccacagcacaataaaaaccatatgcagcagacccacagccagtatcatcccgaacagggaaaaactgaaagccttccttctggaagaggaagatctggaacaagacaagaatgtccacttccaacactgttactcaacatagtactggaagtcctagctacagcaat
i macFas5.chr5_KE145639_random    I 7 C 0
s cerAty1.NW_012003162v1             63398 370 -    623180 aaaaagaccattcatcatgtctaagtgggatttatcccaaggatggcagcaaatggttcaacacatg----tcaatcagtgtgatacatcacatcaacagaatgaaggacaaaaaccatatgatgagttcaattgatgctg-aaagcttttaataaaatccaacatccctatgataaaacgaaaccctt-aaaaaaactagacatagaaggaacataccacagcacaataaaaaccatatgcagcagacccacagccagtatcatcccgaacagggaaaaactgaaagccttccttctg--------agatctggaacaagacaagaatgtccacttccaacactgttactcaacatagtactggaagtcctagctacagcaat
i cerAty1.NW_012003162v1          N 0 I 47
s manLeu1.NW_012107275v1             67873 374 +    721643 aaaaagaccattcatcatgtctaagtgggatttatcccaaggatggcagcaaatggttcaacacatgtcaatcaatcagtgtgacacatcacatcaacagaatgaaggacaaaaaacatatgatgagttcaattgatgctg-aaagcttttaataaaatccaacatccctatgataaaacgaaaccctt-aaaaaaactagatatagaaggaacataccacagcacaataaaaaccatatgcagcagacccacagccagtatcatcccgaacagggaaaaactgaaagccttccttcta--------agatctggaacaagacaagaatgtccacttccaacactgttactcaacatagtactggaagtcctagctacagcaat
i manLeu1.NW_012107275v1          N 0 C 0
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I

a score=25883.000000
s hg38.chr14_GL000009v2_random      129016 24 +    201709 caagaaaattgaaaaacggtaaag
s panTro5.chr9                    41818901 24 + 116767853 tcagacaagagaaaaacaataaaa
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77780296 24 + 205426864 tcagacaagagaaaaacaataaaa
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            189668 24 +    245036 tcagacaagagaaaaacaataaaa
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       62672 24 -     87690 tcagacaagagaagaacaataaaa
i macFas5.chr5_KE145639_random    C 0 I 23
s manLeu1.NW_012107275v1             68247 24 +    721643 tcagacaagagaagaacaataaaa
i manLeu1.NW_012107275v1          C 0 I 23
e cerAty1.NW_012003162v1             63768 47 -    623180 I
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I

a score=2344789.000000
s hg38.chr14_GL000009v2_random      129040 1403 +    201709  
s panTro5.chr9                    41818925 1401 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77780320 1399 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            189692 1416 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       62719 1405 -     87690  
i macFas5.chr5_KE145639_random    I 23 C 0
s cerAty1.NW_012003162v1             63815 1398 -    623180  
i cerAty1.NW_012003162v1          I 47 C 0
s manLeu1.NW_012107275v1             68294 1380 +    721643  
i manLeu1.NW_012107275v1          I 23 C 0
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I

a score=7976786.000000
s hg38.chr14_GL000009v2_random      130443 3428 +    201709  
s panTro5.chr9                    41820326 3439 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77781719 3412 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            191108 3437 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       64124 3443 -     87690  
i macFas5.chr5_KE145639_random    C 0 C 0
s cerAty1.NW_012003162v1             65213 3450 -    623180  
i cerAty1.NW_012003162v1          C 0 C 0
s manLeu1.NW_012107275v1             69674 3447 +    721643  
i manLeu1.NW_012107275v1          C 0 N 0
s colAng1.NW_012117555v1             88894 3431 +    850859  
i colAng1.NW_012117555v1          N 0 C 0
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I

a score=2180840.000000
s hg38.chr14_GL000009v2_random      133871 1237 +    201709  
s panTro5.chr9                    41823765 1241 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77785131 1240 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            194545 1245 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       67567 1245 -     87690  
i macFas5.chr5_KE145639_random    C 0 C 0
s cerAty1.NW_012003162v1             68663 1241 -    623180  
i cerAty1.NW_012003162v1          C 0 I 6191
s colAng1.NW_012117555v1             92325 1240 +    850859  
i colAng1.NW_012117555v1          C 0 C 0
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I

a score=213758.000000
s hg38.chr14_GL000009v2_random      135108 161 +    201709 acttcctcttttcctaattgaataccctttatttctttctcttgcctgattgccctggccagaacttccaatactatgttgaataggagtagtgagagagggtatccttgtcttgtgctgattttcaaagggaatgcttccagtttttgcacattcagtat
s panTro5.chr9                    41825006 161 + 116767853 acttcttcttttcctaattgatcaccctttatttcttactcttgcctgattgccctggccagaacttccaacactatgtggaataggagtagtgagagagggcatccttgtcttgtgctgattttcaaagggaatgcttccagtttttgcacattcagtat
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77786371 161 + 205426864 acttcctcttttcctaattgaatatcctttatttctttctcttgcctgattaccctggccagaacttccaacactatgttgaataggagtattgagagagggcatccttgtcttgtgctgattttcaaagggaatgcttccagtttttgcacattcagtat
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            195790 161 +    245036 acttcctcttttcctaattgaataccctttatttctttctcttgcctgattaccctggccagaacttccaacactatgttgaataggagtactgagagagggcatccttgtcttgtgctgattttcaaagggaatgcttccagtttttgcacattcagtat
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr5_KE145639_random       68812 161 -     87690 acttcctcttttcctaattgaataccctttatttctttctcttgcctgattgccctggccagaacttccaatactatgttgaataggaatagtgagagagggcatccttgtcttgtgctgattttcaaagggaatgcttccagtttttgtgcattcagtat
i macFas5.chr5_KE145639_random    C 0 C 0
s colAng1.NW_012117555v1             93565 161 +    850859 acttcctcttttcctacttgaatatcctttttttctttctcttgcctgattgccctggccagaacttccaatactatgttgaataggagtggtgagagagggcatccttgtcttgtgctgattttcaaagggaatgcttccagtttttgcacattcagtat
i colAng1.NW_012117555v1          C 0 I 15696
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I

a score=483491.000000
s hg38.chr14_GL000009v2_random      135269 610 +    201709  
s panTro5.chr9                    41825167 607 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77786532 608 + 205426864  
i panPan2.chr3                    C 0 I 78
s gorGor5.CYUI01000160v1            195951 609 +    245036  
i gorGor5.CYUI01000160v1          C 0 I 78
s macFas5.chr5_KE145639_random       68973 657 -     87690  
i macFas5.chr5_KE145639_random    C 0 C 0
e colAng1.NW_012117555v1             93726 15696 +    850859 I
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I

a score=26543.000000
s hg38.chr14_GL000009v2_random      135879 108 +    201709 tattctctgatgataatatgtatttctgtgggatcagtggtgatatccccttaatca-tgttttattgcatctatttgattcttctctcttttcttctttattagtctg
s panTro5.chr9                    41825774 108 + 116767853 tattctctgatgataatttgtatttctgtgggatcagtggtgatatccccttaatca-ttttttattgcatctgtttgattcttctgtcttttcttctttattagtctg
i panTro5.chr9                    C 0 C 0
s macFas5.chr5_KE145639_random       69630 109 -     87690 tattctctgatggtaatttgtatttctgtgggattggtggtgatatcccctttatcatttttttattgcatctatttgatttttctctcttttcttctttattagtctg
i macFas5.chr5_KE145639_random    C 0 C 0
e colAng1.NW_012117555v1             93726 15696 +    850859 I
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I
e panPan2.chr3                    77787140  78 + 205426864 I
e gorGor5.CYUI01000160v1            196560  78 +    245036 I

a score=1132291.000000
s hg38.chr14_GL000009v2_random      135987 1378 +    201709  
s panTro5.chr9                    41825882 1377 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77787218 1381 + 205426864  
i panPan2.chr3                    I 78 C 0
s gorGor5.CYUI01000160v1            196638 1381 +    245036  
i gorGor5.CYUI01000160v1          I 78 C 0
s macFas5.chr5_KE145639_random       69739 1401 -     87690  
i macFas5.chr5_KE145639_random    C 0 N 0
e colAng1.NW_012117555v1             93726 15696 +    850859 I
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I

a score=1464090.000000
s hg38.chr14_GL000009v2_random      137365 2871 +    201709  
s panTro5.chr9                    41827259 2884 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77788599 2880 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            198019 2869 +    245036  
i gorGor5.CYUI01000160v1          C 0 I 3
e colAng1.NW_012117555v1             93726 15696 +    850859 I
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I

a score=273.000000
s hg38.chr14_GL000009v2_random      140236 1 +    201709 a
s panTro5.chr9                    41830143 1 + 116767853 a
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77791479 1 + 205426864 a
i panPan2.chr3                    C 0 I 3582
e colAng1.NW_012117555v1             93726 15696 +    850859 I
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I
e gorGor5.CYUI01000160v1            200888 3 +    245036 I

a score=1678.000000
s hg38.chr14_GL000009v2_random      140237 23 +    201709 a--aagatttagtgttacttatctt
s panTro5.chr9                    41830144 25 + 116767853 aagaagatttagtgttacttatctt
i panTro5.chr9                    C 0 C 0
e colAng1.NW_012117555v1             93726 15696 +    850859 I
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e nomLeu3.chr21_GL397661_2_random    97427 9356 -    139590 I
e panPan2.chr3                    77791480 3582 + 205426864 I
e gorGor5.CYUI01000160v1            200888  3 +    245036 I

a score=8487.000000
s hg38.chr14_GL000009v2_random      140260 30 +    201709 ttggcaatgcttcccatacaatgttatcaa
s panTro5.chr9                    41830169 30 + 116767853 ttggcaatgcttcccatacaatgttatcaa
i panTro5.chr9                    C 0 C 0
s nomLeu3.chr21_GL397661_2_random   106783 30 -    139590 TTGGCAATGCTTCCCATACAATGTTATCAA
i nomLeu3.chr21_GL397661_2_random I 9356 C 0
e colAng1.NW_012117555v1             93726 15696 +    850859 I
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e panPan2.chr3                    77791480 3582 + 205426864 I
e gorGor5.CYUI01000160v1            200888  3 +    245036 I

a score=600.000000
s hg38.chr14_GL000009v2_random      140290 1 +    201709 c
s panTro5.chr9                    41830199 1 + 116767853 c
i panTro5.chr9                    C 0 C 0
s ponAbe2.chrUn                    4767699 1 +  72422247 c
i ponAbe2.chrUn                   N 0 I 5435
s nomLeu3.chr21_GL397661_2_random   106813 1 -    139590 C
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e colAng1.NW_012117555v1             93726 15696 +    850859 I
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e panPan2.chr3                    77791480 3582 + 205426864 I
e gorGor5.CYUI01000160v1            200888 3 +    245036 I

a score=15239.000000
s hg38.chr14_GL000009v2_random      140291 64 +    201709 taagatttagcaaagatgtc-aaaaaattgaaaacacttgaccaaaacagaatgacagtttattg
s panTro5.chr9                    41830200 64 + 116767853 taagttttagcaaagatgtc-aaaaaatggaaaacatttgaccaaaacggaatggcagtttattg
i panTro5.chr9                    C 0 C 0
s nomLeu3.chr21_GL397661_2_random   106814 65 -    139590 TAAGTTTTAGcaaagatgtcaaaaaaattaaaaacatttgaccaaaacagaatgacagtttattg
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e colAng1.NW_012117555v1             93726 15696 +    850859 I
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e panPan2.chr3                    77791480 3582 + 205426864 I
e ponAbe2.chrUn                    4767700 5435 +  72422247 I
e gorGor5.CYUI01000160v1            200888  3 +    245036 I

a score=1730325.000000
s hg38.chr14_GL000009v2_random      140355 3464 +    201709  
s panTro5.chr9                    41830264 3459 + 116767853  
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            200891 3455 +    245036  
i gorGor5.CYUI01000160v1          I 3 I 18
s nomLeu3.chr21_GL397661_2_random   106879 3450 -    139590  
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e colAng1.NW_012117555v1             93726 15696 +    850859 I
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e panPan2.chr3                    77791480 3582 + 205426864 I
e ponAbe2.chrUn                    4767700 5435 +  72422247 I

a score=445.000000
s hg38.chr14_GL000009v2_random      143819  9 +    201709 aaaa---------aagta
s panTro5.chr9                    41833723 18 + 116767853 aaaatataaatataaata
i panTro5.chr9                    C 0 C 0
s nomLeu3.chr21_GL397661_2_random   110329  9 -    139590 aaaa---------aaatt
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e colAng1.NW_012117555v1             93726 15696 +    850859 I
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e panPan2.chr3                    77791480 3582 + 205426864 I
e ponAbe2.chrUn                    4767700 5435 +  72422247 I
e gorGor5.CYUI01000160v1            204346 18 +    245036 I

a score=11556.000000
s hg38.chr14_GL000009v2_random      143828 25 +    201709 tatatatatgtataggctgggcaca
s panTro5.chr9                    41833741 25 + 116767853 taaatatatatataggctgggcaca
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            204364 25 +    245036 tatatatatatataggctgggtgca
i gorGor5.CYUI01000160v1          I 18 C 0
s nomLeu3.chr21_GL397661_2_random   110338 25 -    139590 tatatatatgtataggctgggtgta
i nomLeu3.chr21_GL397661_2_random C 0 C 0
e colAng1.NW_012117555v1             93726 15696 +    850859 I
e cerAty1.NW_012003162v1             69904 6191 -    623180 I
e panPan2.chr3                    77791480 3582 + 205426864 I
e ponAbe2.chrUn                    4767700 5435 +  72422247 I

a score=53883.000000
s hg38.chr14_GL000009v2_random      143853 45 +    201709 gtggctcatgcctgtaatcccagcagtttgggaggccaaggcggg
s panTro5.chr9                    41833766 45 + 116767853 gtggctcatgcctgtaatcccagcagtttgggaggccaaggtggg
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            204389 45 +    245036 gtggctcacgcctgtaatcccagcagtttgggaggccaaggcggt
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random   110363 45 -    139590 gtggttcacgcctgtaatcccagcagtttgggaggccaaggtgtg
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s cerAty1.NW_012003162v1             76095 45 -    623180 gtggctcacgcctgtaatcccaacactttgggaggctgaggcagg
i cerAty1.NW_012003162v1          I 6191 C 0
s colAng1.NW_012117555v1            109422 45 +    850859 gtggctcacgcctgtagtcccaacactttgggaggctgaggcagg
i colAng1.NW_012117555v1          I 15696 C 0
e panPan2.chr3                    77791480 3582 + 205426864 I
e ponAbe2.chrUn                    4767700 5435 +  72422247 I

a score=752061.000000
s hg38.chr14_GL000009v2_random      143898 486 +    201709 tggatcacttgagatcaggagtttgagaccagcctggccaacatggtgaaacttcatctctactaaa-accacaaaaattagccgggtatggtggcacacacctgtaatcgcagctactcaggaggctgagacaggagaattgctcaaacctgggaagtggaggttgcagtgagccaagatcacaccactgcactccagcatgggcaacagaccaagactctgtctcaaaaaaatgtg--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtggctagaatggtccataatatatagccagctcgagtcctagaaaacctagcaagcttAAGGTTAGAGCTTCTCATTTTGGCCTTTTCAAGATTAAATCTCCTTTAGTAGGCCCTTCCCCTCTAGGGAGGTACTTGCCGGAGCGCTGCCTGAA-GTTGGTTTTCTGATGCCCTGTTGTTTCTGTTCTGAATGGTTTATTTCTCATTAT
s panTro5.chr9                    41833811 488 + 116767853 tggatcacttgagatcaggagtttgagaccagcctggtcaacataatgaaacctcatctctactaaa-accacaaaaattagccgggtatggtggcgtacacctgtaatcgcagctactcaggaggctgagacagaagaattgctcgaacctgggaagtggaggttgcagtgagccaaaagcgcaccactgcactccagcatgggcaacagagcaagactctgtctcaaaaaagtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggctagaatggtccataatatatagccagctcgagtcccagaaaacctagcaagcttAAGGTTAGAGCTTCTCATTTTGGCCTTTTCAAGATTAAATCTCCTTTAGTAGGCCCTTCCCCTCTAGGGAGGTACTTGCTGGAGCGCTGCCTGAA-GTTGGTTTTCTGATGCCCTGTTGTTTCTGTTCTGAATGGTTTATTTCTCATTAT
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77795062 476 + 205426864 Tggatctcctgagatcaggagtttgagaccagcctgaccaacatagtgaaacttcatctctactaaa-accacaaaaattagacgggcatggtggcgcacacctgtaatcgcagctactcaggaggctgagacaggagaatcacttgaacctgggaagtggaggttgcagtgagccaagatcgcaccactgcactccagcctgggaaacagagcaagactctgtctcaaaaaaatgtg------------tgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgactagaatggtccataatatatagccagctcgagtcccagaaaacctagcaagcttaagGTTAGAGCTTCTCATTTTGGCCTTTTCAACATTAAATCTCCTTTAGTAAGCCCTTCCCCTCTAGGGAGATACTTGCTGGAGCACTGCCTGAA-GTTGATTTTCTGATGCCCTGTCGTTTCTGTTCTGAATGGTTTATTTCTCATTAT
i panPan2.chr3                    I 3582 C 0
s gorGor5.CYUI01000160v1            204434 479 +    245036 tggatctcctgagatcaggagtttgagaccagcctgaccaacatggtgaaacttcatctctactaaa-accacaaaaattagacaggcatggtggtgcacacctgtaatcgcagctactcaggaggctgagacaggataatcactcgaacctgggaagtggaggttgcagtgagccaagatcgcaccactgcactccagcctgggaaacagagcaacactctgtctcaaaaaaatgtg--------tgtgtgtgtgtgtgtgtgtgtgtg-gtgtgtgcgtgtgactagaatggtccataatatatagccagctcgagtcccagaaaacctagcaagcttAAGGTTAGAGCTTCTCATTTTGGCCTTTTCAACATTAAATCTCCTTTAGTAAGCCCTTCCCCTCTAGGGAGGTACTTGCCGGAGCACTGCCTGAA-GTTGATTTTCTGATGCCCTGTCGTTTCTGTTCCGAATGGTTTATTTCTCATTAT
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random   110408 466 -    139590 tggatcacttgacaccaggagtttgacaccagcctgaccaacatggtgaaacctcatctctactaaacacccc--aaatttgacaggcatggtggcacacagctgtaatcacaggtactcaggatgcggagacaggagaattgctcaaacctgggaagtggaggttacagtgagccaagattgcaccactgcactccagcctgggcaacacagcaagactctgtctcaaaaaaatgtg--------------------tgtgtgtgtgtgtgtgtgtgtgtgtgactagaatggtcgataatatatagccagcttgagtcccagaaaatctagcaaGCTTAAGGTTAGAACTTCTCATTTTGGCCTTTTCAACATTAAATCTCCTTTAGTAAGCCCTTCCCCCCTAGGGAGGTACTTGCTGGAGCACTGCCTGAA-GTTGGTTTTCTGATGCTCTGTTGTTTCTGTTCTGAATGGTTTATTTCTC-TTAT
i nomLeu3.chr21_GL397661_2_random C 0 I 4088
s cerAty1.NW_012003162v1             76140 464 -    623180 aggatcacttgaggccgggagttcaagaccagcctggccgacatggaaaaaccctgtctctactaaa-aacacaaaaattagcagggcgtgatggtgcacacctataatcgcagctactcaggagactgaggcaagagaatcgctcaaacgtgggaggcagaggttgcagcgagctgagattgtaccactgcactccagcctaggcaacagagcaagactctgtctcaaaaaaatgtg------------tgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtctagaatggtccacaatatatagccagctgtagtcccagaaaacctagcaaccttAAGGTCAGAGCTTCTCATTTTGGCCTTTGCAACATGAAATCT------------CCTTCCCCTCTAGGGCGGTACTTGCCGGAGCGCTGCCTGGA-ATTGGTTTTCTGATGCCCTGTTGTTTCTATTCTGAATGGTTTATTTCTCATTAT
i cerAty1.NW_012003162v1          C 0 C 0
s colAng1.NW_012117555v1            109467 448 +    850859 aggatcacttgaggccaggagttcaagaccagcctggccaacatggaaaaaccctgtctctactaaa-aacacaaaaattagcagggcagggtggtgcacacctgtaatcgcagctactcaggagactgaggcaagagaatcgctcaaacgtgggaggcagaggttgcagcgagctgagattgtaccactgtactccagcctgggcaacagagcaagactctgtctcaaaaaaa-----------------------------atgtgtgtgtgtgtgtgtgtgtctagaatggtccacaatatatagccagctctagtcccagaaaacctagcaaCCTTACGGTCAGAGCTTCTCATTTTGGCCTTTTCAACATGAAATCT------------CCTTGCCCTCTAGGGAGGTACTTGCCGGAGCACTGCCTGGACGTTGGTTTTCTGATGCCCTGTTGCTTCTATTCTGAAGGGTTCATTTCTCATTAT
i colAng1.NW_012117555v1          C 0 C 0
e ponAbe2.chrUn                    4767700 5435 +  72422247 I

a score=626435.000000
s hg38.chr14_GL000009v2_random      144384 377 +    201709 AAGAGCTCAGCaaagcaggcagagttaaaaagcagagacatgaaggc--tttaaaatcatggacttcactcctacactgaatctcaggtccccagaaagacagaaacaccatgggacCACAGCAAAGGCAGAAGGAGGAGTGAGAGAGGGAGGTGGACAGAACAACAAACAGGAGTTGGCTCTCATTTTTTCACGCGTGCCATTTTCTTTAGGTTTTTCTAGTTTATGGAGTCTCTTTGTTCCAGTTGAGCACACAGATAAACTAGAGATCT--C-AAGGCTTTTGCTGAGAACATCAAAGCCTTTAACCTCTGTTGGGCCAAATA-TTTAGACCAAAAATACAGACAGACACACAAAAGCCAGAACCGGACCAGATTGAGTA
s panTro5.chr9                    41834299 379 + 116767853 AAGAGCTCAGCaaagcaggcagagttaaaaagcagagacatgaaggc--tttaaaatcatggacttcactcctacactgaatctcaagtccccagaaagacagaaacaccatggggcCATAGCAAAGGCAGGAGGAGGAGTGAGAGAGGGAGGTGGACAGAACAACAAACAGGAGTTGGCTCTCAATTTTTCACGTGTGCCATTTTCTTTAGGTTTTTCTAGTTTATGGAGTCTCTTTGTTCCAGTTGAGCACAGAGATAAACTAGGGATCTCAC-AAGGCTTTTGCTGAGAACATCAAAGCCTTTAACCTCTGTTGGGCCAAATA-TTTAGACCAAAAATACAGATAGACACACAAAAGCCAGAACCAGACCAGATTGAGTA
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77795538 380 + 205426864 AAGAGCTCAGCaaagcaggcagagttaaaaagc--agacatgaagactttttaaaatcgtggacttcattcctgcactgaatctcaggtccccagaaagagagaaacaccatgggacCACAGCAAAGGCAGAAGGAGGAGTGAGAGAGGGAGGTGGACAGAACAACAAAGAGGAGTTGGCTCTCAATTTTTCACATCTGCCATTTTTTTTAGGTTTTTCTAGTTTATGGAGTCTCTTTGTTCCAATTGAGCACACAGATAAACTAGAGGTCGCAC-AAGCCTTTTGCTGAGACCATCAAAGCCTTTAACCTCTGTTGAGCCAAATATTTTAGACCAAAAATACAGATAGACACACAAAAGCCAGAACCAGACCAGATTGAGTA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            204913 380 +    245036 AAGAGCTCAGCaaagcaggcaaaggtaaaaagc--agacatgaagactttttaaaattgttgacttcactcctacactgaatctcaggtccccataaagagagaaacaccatgggacCACAGCAAAGGCAGAAGGAGGAGTGAGAGAGGGAGGTGGACAGAACAACAAACAGGAGTTGGCTCTCAATTTTTCACATCTGCCATTTTCTTTAGGTTTTTCTAGTTTATGGAGTCTCTTTGTTCCAATTGAGCACACAGATAAACTAGAGATCGCAC-AAGGCTTTTGCTGGGACCATCAAAGCCTTTAACCTCTGTTGAGCCAAATATTTTAGACCAAAAATACAGATAGACACACAAAAGCCAGAACCAGACCAGATTGAGTA
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random   114962 381 -    139590 AAGAGCTCAGCAAAGCAGACAGAGTTAAAAA-CAGAGACATGAAGACTTTTTAAAATCGTGGACTTCACTCCTACACTGAATCTCAAGTCCCCAAAAGGACAGAAACACCATGGGACCACAGCAAATTCAGAAGGAGGAGTGAGAGAGGGAGGTGGACAGAACAACAAACGGGAGTTGGCTCTCAATTTTTCACGTCTGCCATTTTCCTTAATTTTTTCTAGTTTATGGAGTCTCTTTGTTCCAATTGAGCACACAGATAAACTGGAGATCTCACAAAGGCTTTTGCCAAGACCATCAAAGCCTTTGACTTCTGTTGGGCCAAATATTTTAGA-CAAAAATACAGATAGACACACAAAAGCCAGAACCAGACCAGATTGTGTA
i nomLeu3.chr21_GL397661_2_random I 4088 I 8127
s cerAty1.NW_012003162v1             76604 376 -    623180 AAGGGTTCAGCaaagcaggcagagttaaaaagcagagacatgaagactttttaaaatcgtggacttcactcctacactgaacctcaggtccccagaaagacaggagcaccacgggacCACAGCAAAGGCAGA---AGGAGTGAGAGAGGGAGGTGGACAGAAGAGCAAACAGGAGTT-GTTCTAAATTCTTCATGTGTGCCATTTTCTGTAGGTTTTTCTAGTTTATGGAGTCTC--TGTTCCAACTGAGCACACAGATAAACTAGAGATCTCAC-AAGGCTTTCGTTGAGACCATCACAGCCTTTAACCTCTCTTGGGCCAAATATTTTAGACCAAAAATACAGATAGACACACAAAAGCCAGAACCAGACCAGATTGAGTA
i cerAty1.NW_012003162v1          C 0 C 0
s colAng1.NW_012117555v1            109915 371 +    850859 AAGGGTTCAGCaaagcaggcagagttaaaaagcagagacatgaagactttttaaaatcgtggacttcactcctacactgaacctcaggtccccagaaagacagaagcaccatgggacCACAGCAAAGGCAGA---AGGAGTGAGAGA-------GGACAGAAGAGCAAACAGGAGTT-GTTCTAAATGCTTCATGTGTGCCATTTTCTGTAGGTTTTTCTAGTTTATGGAGTCTCTTTGTTCCAACTGAGCACACAGATAAACTAGAGATCTCAC-AAGGCTTTCACTGAGACCGTCACAGCCTTTAACCTCTGTTGGGCCAAATATTTTAGACCAAAAATACAGATAGACGCACAAAAGCCAGAACCAGACCAGATTGAGTA
i colAng1.NW_012117555v1          C 0 C 0
e ponAbe2.chrUn                    4767700 5435 +  72422247 I

a score=497799.000000
s hg38.chr14_GL000009v2_random      144761 420 +    201709 GCTTAGTGGCTACAGCCTTTATTCCCTTTATTCTTTAGGATACGAACTCAAACCAGATTCAGGGTTCTAACCCAACCAGGACCCCCCTGGGGTGAAACTGAAACCCCACAGTCTAGACAAGGTTGGGGGTCtttttttat---------tttttatttttttgagatggagtttcactcttgttgcccaggctggagtgcaattttgcaatattgcctcaccgcaacctccgcctctcaggtttaagcacttatcctgcctcagcctccca---agctgggattacaggcttgtgccaccacgcccagctcattttgcatttttagtagagacagggtttctccatgttggtcaggctggtctcgaactcccaacctcggatgatccgcacacctaagcctcccaaagtgttgacattacaggcatgagcca
s panTro5.chr9                    41834678 419 + 116767853 GCTCAGTGGCTACAGCCTTTATTCCCTTTATTCTTTAGGATTCGAACTCAAACCAGATTCAGGGTTCTAACCCAACCAGGACCACCCTGGGTTGAAACTGAAACCCCACAGTCTAGACAAGGTT-GGGGTCtttttttat---------tttttatttttttgagatggagtttcactcttgttgcccaggctggagtgcaatggtgcaatatcgcctcaccgcaacatccgcctctcaggtttaagcacttatcctgcctcagcctccca---agctgggattacaggcctgtgccagcacgcccagctcattttgcatttttagtagagacagggtttctccatgttggtcaggctggtctcgaactcccaacctcaggtgatccacccacctaagcctcccaaattgttggcattacaggcatgggcca
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77795918 429 + 205426864 TCTCAGTGGCTGCAGCCTTTATTCCCTTTATTCTTTAGGATTCAAACTCAAACCAGATTCAGGGTTCTAACCCAACCAGGACCCCCCTGGGGTGAAACTGAAACCCCACAGTCTAGACAAGGTTGGGGGTCtttttttattttttt--atttttatttttttgagacggagtttcactcttgttgcccaggctggagtgcagtggtgcaatatcgcctcaccgcaacctccacctctcgggtttaagcacttatcctgcctcagcctcccaagtagctgggattacaggcatgtgctaccatgcctggctaagtttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcaaactcccaacctcaggtgatccacccgtctaagcc-cccaaagtgttgggattataggcatgagcca
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            205293 430 +    245036 TCTCAGTGGCTGCAGCCTTTATTCCCTTTATTCTTTAGGATTCGAACTCAAACCAGATTCAGGGTTCTAACCCAACCAGGACCCCCCTGGGGTGAAACTGAAACCCCACAGTCTAGACAAGGTTGGGGGTCtttttttattttttt--atttctatttttttgagacggagtttcactcttgttgcccaggctggagtgcaatggtgcaatatcgcctcactgcaacctccacctctcgggtttaagcacttatcctgcctcagcctcccaagtagctgggattacaggcgtgtgctaccatgcctggctaattttgtatttttagtagagacggggtttctccatgttggtcgggctggtctcaaactcccaacctcaggtgatccacctgcctaagctccccaaagtgttgggattataggcatgagcca
i gorGor5.CYUI01000160v1          C 0 C 0
s cerAty1.NW_012003162v1             76980 431 -    623180 TCTCAGTGACTGCAGCCTTTATTCACTTTATTCTTTAGGATTTGAACTCAAACCAGATGCAGGGTTCTAACCCAACCAGGATCCCCCTGGGGAGAGACTGAAA-CGCACAGTCTAGACAAGGGTGGGGGTCtttttttaatcttttcttttttttttcttttgagacggagtttcgctcttgttgcccaggctggagagcaatggtgcaatatcggctcactgcagcctccgcctcccgggttcaagcacatatcctgcctcagcctcccaagtagctgggattacaggcacccgccaccgcgcccggctaattttgtatttttagtagagatggggtttctccatgttggtcaggctggtcttgagctcctgaccttaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagcca
i cerAty1.NW_012003162v1          C 0 N 0
s colAng1.NW_012117555v1            110286 424 +    850859 TCTCAGTGACTGCAGCCTTTATTCACTTTATTCTTTAGGATTTGAACTCAAACCAGATTCAGGGTTCTAACCCAACCAGGATCCCCCTGGGGTGAGACTGAAA-CCCACAGTCTAGACAAGGGTGGGGGTCtttttttaatc------ttttttttttttttgagacggagtttcactcttgttgcccaggctggagagcaatggtgcaatatcggctcactgcaacctccgcctcccgggttcaagcactta-cctccctcagcctgccaagtagctgggattacaggcatgcaccaccacgccctgctaattttgtatttttagtagagacagggtttctccatgttggtcaggctggtcttgagctcctaacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagcca
i colAng1.NW_012117555v1          C 0 N 0
e nomLeu3.chr21_GL397661_2_random   115343 8127 -    139590 I
e ponAbe2.chrUn                    4767700 5435 +  72422247 I

a score=333141.000000
s hg38.chr14_GL000009v2_random      145181 673 +    201709  
s panTro5.chr9                    41835097 671 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77796347 675 + 205426864  
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            205723 657 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
e nomLeu3.chr21_GL397661_2_random   115343 8127 -    139590 I
e ponAbe2.chrUn                    4767700 5435 +  72422247 I

a score=-1240.000000
s hg38.chr14_GL000009v2_random      145854 1 +    201709 -c
s panTro5.chr9                    41835768 1 + 116767853 -c
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77797022 1 + 205426864 -c
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            206380 1 +    245036 -c
i gorGor5.CYUI01000160v1          C 0 C 0
s ponAbe2.chrUn                    4773135 1 +  72422247 a-
i ponAbe2.chrUn                   I 5435 N 0
e nomLeu3.chr21_GL397661_2_random   115343 8127 -    139590 I

a score=1288984.000000
s hg38.chr14_GL000009v2_random      145855 2558 +    201709  
s panTro5.chr9                    41835769 2558 + 116767853  
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77797023 2550 + 205426864  
i panPan2.chr3                    C 0 I 2909
s gorGor5.CYUI01000160v1            206381 2542 +    245036  
i gorGor5.CYUI01000160v1          C 0 I 79
e nomLeu3.chr21_GL397661_2_random   115343 8127 -    139590 I

a score=236994.000000
s hg38.chr14_GL000009v2_random      148413  961 +    201709  
s panTro5.chr9                    41838327 1026 + 116767853  
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            209002 1019 +    245036  
i gorGor5.CYUI01000160v1          I 79 C 0
e nomLeu3.chr21_GL397661_2_random   115343 8127 -    139590 I
e panPan2.chr3                    77799573 2909 + 205426864 I

a score=93386.000000
s hg38.chr14_GL000009v2_random      149374 198 +    201709 gttcctcagggtaagggtgccctaactcctgtggggaccttctttcatggctccccaggaagtaaggagatgggaattgtgctgtagaggtctacagcagcactgcttgctgaggtgggggacaattgctgtacatttgtaagggcagtggctgtgctgggtatgcctcagtttgttgaggggcttgaggcgggtccc
s panTro5.chr9                    41839353 198 + 116767853 Attcctcagggtaagggtgccctaagtcctgtggggaccttctttggtggctccccaggaagtaaggagatgggaattgtgctgtagaggtctacagcagcactgcttgctgaggcgggagacaattgctgtacatttgtaagggcagtggctgtgctgggtatgcctcagtttgttgagcggcttgaggcgggtccc
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            210021 193 +    245036 gttcctcagggtaagcattgcctaactcctgtggggaccttctttggtggctccccaggaagtaaggagatgggaattgtgctgtagaggtctacagcagcactgcttgctgaggtgggggacaat---tgtacatttgtaagggcagtggctgtgctgggtatgcctcagtttgttgaggggc-cgaggcggg-ccc
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr2                      142363 198 - 192460366 gttcctgagggtacgggtcccctaactcctgtgaggaccttctttggtggctcactaggaagtaacgagatgggaattgtgctgtagaggtctacagcagcactgcttgctgagacaggtgacaattgttgtatatttgtaagggcactggctgtgctgagtatgcctcggttcgttgaggggctcaaggtgggtctc
i macFas5.chr2                    N 0 C 0
e nomLeu3.chr21_GL397661_2_random   115343 8127 -    139590 I
e panPan2.chr3                    77799573 2909 + 205426864 I

a score=187.000000
s hg38.chr14_GL000009v2_random      149572 1 +    201709 c
s panTro5.chr9                    41839551 1 + 116767853 t
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            210214 1 +    245036 c
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr2                      142561 1 - 192460366 t
i macFas5.chr2                    C 0 C 0
s nasLar1.chr2                      125990 1 + 181502896 t
i nasLar1.chr2                    N 0 I 1562
e nomLeu3.chr21_GL397661_2_random   115343 8127 -    139590 I
e panPan2.chr3                    77799573 2909 + 205426864 I

a score=723549.000000
s hg38.chr14_GL000009v2_random      149573 1451 +    201709  
s panTro5.chr9                    41839552 1448 + 116767853  
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            210215 1447 +    245036  
i gorGor5.CYUI01000160v1          C 0 C 0
s macFas5.chr2                      142562 1451 - 192460366  
i macFas5.chr2                    C 0 C 0
e nasLar1.chr2                      125991 1562 + 181502896 I
e nomLeu3.chr21_GL397661_2_random   115343 8127 -    139590 I
e panPan2.chr3                    77799573 2909 + 205426864 I

a score=-1367.000000
s hg38.chr14_GL000009v2_random      151024  24 +    201709 ttctaagtactaaatttcattccc---------------------------------------------------------------------------------------------------
s panTro5.chr9                    41841000  24 + 116767853 ttctaagtactaaatttcattccc---------------------------------------------------------------------------------------------------
i panTro5.chr9                    C 0 C 0
s gorGor5.CYUI01000160v1            211662  24 +    245036 ttctaagtactaactttcactccc---------------------------------------------------------------------------------------------------
i gorGor5.CYUI01000160v1          C 0 I 114
s nomLeu3.chr21_GL397661_2_random   123470  24 -    139590 ttctgagcactcggctttcccacc---------------------------------------------------------------------------------------------------
i nomLeu3.chr21_GL397661_2_random I 8127 C 0
s macFas5.chr2                      144013 119 - 192460366 ttctgagtact----ttcactccccctctttgtaataaatgccttaagaaatttaaacaagcagaatgtctgctttcactttgtcccattgttacccttgttcttctgagcgctcagttttcc
i macFas5.chr2                    C 0 C 0
e nasLar1.chr2                      125991 1562 + 181502896 I
e panPan2.chr3                    77799573 2909 + 205426864 I

a score=641.000000
s hg38.chr14_GL000009v2_random      151048  9 +    201709 -----catctttgt--
s panTro5.chr9                    41841024  9 + 116767853 -----catctttgt--
i panTro5.chr9                    C 0 C 0
s nomLeu3.chr21_GL397661_2_random   123494  9 -    139590 -----catcttctt--
i nomLeu3.chr21_GL397661_2_random C 0 I 4
s macFas5.chr2                      144132 16 - 192460366 caccaagtccttttag
i macFas5.chr2                    C 0 C 0
e nasLar1.chr2                      125991 1562 + 181502896 I
e panPan2.chr3                    77799573 2909 + 205426864 I
e gorGor5.CYUI01000160v1            211686 114 +    245036 I

a score=9727.000000
s hg38.chr14_GL000009v2_random      151057 10 +    201709 atgtcctcgg
s panTro5.chr9                    41841033 10 + 116767853 atgtcctcgg
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77802482 10 + 205426864 atgtccccag
i panPan2.chr3                    I 2909 C 0
s gorGor5.CYUI01000160v1            211800 10 +    245036 atgtcctcag
i gorGor5.CYUI01000160v1          I 114 C 0
s nomLeu3.chr21_GL397661_2_random   123507 10 -    139590 atttcctctg
i nomLeu3.chr21_GL397661_2_random I 4 C 0
s macFas5.chr2                      144148 10 - 192460366 acatcctcag
i macFas5.chr2                    C 0 C 0
e nasLar1.chr2                      125991 1562 + 181502896 I

a score=8022.000000
s hg38.chr14_GL000009v2_random      151067 4 +    201709 gtgt
s panTro5.chr9                    41841043 4 + 116767853 gtgt
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77802492 4 + 205426864 gtgt
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            211810 4 +    245036 gtgt
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random   123517 4 -    139590 gtgt
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s macFas5.chr2                      144158 4 - 192460366 gtgt
i macFas5.chr2                    C 0 C 0
s nasLar1.chr2                      127553 4 + 181502896 gtgt
i nasLar1.chr2                    I 1562 I 4

a score=5595.000000
s hg38.chr14_GL000009v2_random      151071 4 +    201709 cttt
s panTro5.chr9                    41841047 4 + 116767853 cttt
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77802496 4 + 205426864 cttt
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            211814 4 +    245036 cttt
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random   123521 4 -    139590 cttt
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s macFas5.chr2                      144162 4 - 192460366 cttt
i macFas5.chr2                    C 0 C 0
e nasLar1.chr2                      127557 4 + 181502896 I

a score=19637.000000
s hg38.chr14_GL000009v2_random      151075 11 +    201709 tgatgttgtgt
s panTro5.chr9                    41841051 11 + 116767853 tgatgttgtgt
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77802500 11 + 205426864 tgatgatgtgt
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            211818 11 +    245036 tgatgatgtgt
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random   123525 11 -    139590 tgatgatgtgt
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s macFas5.chr2                      144166 11 - 192460366 tgatgatgtgt
i macFas5.chr2                    C 0 C 0
s nasLar1.chr2                      127561 11 + 181502896 tgatgatgtgt
i nasLar1.chr2                    I 4 I 466

a score=14856.000000
s hg38.chr14_GL000009v2_random      151086 16 +    201709 cctctgctttcacatg
s panTro5.chr9                    41841062 16 + 116767853 cctctgctttcacatg
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                    77802511 16 + 205426864 cctctgctttcacatg
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1            211829 16 +    245036 cctttgctttcacatg
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random   123536 16 -    139590 cctctgctttcacatg
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s macFas5.chr2                      144177  6 - 192460366 ----------cacaca
i macFas5.chr2                    C 0 C 0
e nasLar1.chr2                      127572 466 + 181502896 I

a score=27402.000000
s hg38.chr14_GL000009v2_random       151102 8 +    201709 ctccagcc
s panTro5.chr9                     41841078 8 + 116767853 ctccagcc
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77802527 8 + 205426864 ctctagcc
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             211845 8 +    245036 ctctagcc
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    123552 8 -    139590 ctctagcc
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204244958 8 - 204787373 ctctagca
i rheMac8.chr2                    N 0 C 0
s macFas5.chr2                       144183 8 - 192460366 ctctagca
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             163696 8 -  11645122 ctctagca
i macNem1.NW_012010856v1          N 0 C 0
s manLeu1.NW_012099043v1             161158 8 -    785044 ctctagca
i manLeu1.NW_012099043v1          N 0 C 0
s colAng1.NW_012123820v1              49576 8 -  10971483 ctctagca
i colAng1.NW_012123820v1          N 0 C 0
e nasLar1.chr2                       127572 466 + 181502896 I

a score=1234139.000000
s hg38.chr14_GL000009v2_random       151110 281 +    201709 ttccttcacc-gggtctttgtcaccccatgttgggcgccaggaatgttggggtgatcagacccaacactaggtcatgggggtgatgaagtccggcagagtcaaaggaatgagaaaaggacagtttgagagagaaagtgggaccaggagaccatcacgagtgtggagtctgcaaagtccccaagctctgggagcccacgctatttgttggtgctcaaac----aaacaggtggtgaggatttaggggttgaaaggaaacggtgtatcaagtgaatgagaaacatatg
s panTro5.chr9                     41841086 281 + 116767853 ttccttcacc-gggtctttgtcaccccatgttgggcgccaggaatgttggggtgatcagacccaacactaggtcatgggggtgatgaagtccggcagagtcaaaggaatgagaaaaagacagtttgagagagaaagtgggaccaggagaccatcacgagtgtggagtctgcaaagtccccaagctctgggagcccacgctatttgttggcgctcaaac----aaacaggtggtgaggatttaggggctgaaaggaaacggtgtatcaagtgaatgagaaacatatg
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77802535 286 + 205426864 ttccttcaccggggtctttgtcaccccatgttgggcacccggaatgttggggtgatcagacccaacactaggttgtgggggtgacaaagtccagtagagtcaaaggaatgagaaaaagacagtttgagagagaaagtgggaccaggggaccatcacaagtgtggagtctgcgaagtccccaagctctgggagcccatgctatttattggcgctcaaacaaagaaacaggtggtgaggatgtggaggttgaaaggaaacggtgtatcaagtgaatgagaaacatatg
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             211853 285 +    245036 ttccttcaccggggtctttgtcgccccatgttgggcaccaggaatgttggggtgatcagacccaacactaggttgtgggggtgacaaagtcc-gtagagtcaaaggaatgagaaaaagacagtttgagagagaaagtgggaccaggagaccatcacaagtgtggagtctgcgaagtccccaagctctgggagcccatgctatttattggtgctcaaacaaagaaacaggtggtgaggatgtggaggttgaaaggaaacggtgtatcaagtgaattagaaacatatg
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    123560 285 -    139590 ttccttcaccggggtctttgtggccccatgttgggcaccaggaatgttggggtgatcagacccaacactaggtcgtgggggcgacaaagtccggtggagtcaaaggaatgagaaaaagacagtttgagagagaaagtgggaccaggggaccatcacgagtgtggagtctgcgaagt-cccaagctctgggagcccacgctatttattggtgctcaagcaaagaaacaggtggtgaggatgtgggggttgaaaggaaatggtgtatcaagtgaatgagaaacatatg
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204244966 280 - 204787373 ttccttcaccggggtctttgttgccccatgttaagagccaggaaAgttggagtgatcagacccaacactaggtcgtgggggtgatgaagtccggtggagtcaaaggagtgag--aaagacagtttgagagagaaagtgggaccaggggaccatcgcgagtgtggtggctgtgaagactctgagctctgggagctgacgttatttattggtgctcaaag----aaataggtggtgagtatgtctgggttgaaaggaaatggtgtctcaagtgaatgagaaacatatg
i rheMac8.chr2                    C 0 I 60
s macFas5.chr2                       144191 280 - 192460366 ttccttcaccggggtctttgttgccccatgttaagagccaggaaAgttggagtgatcagacccaacactaggtcgtgggggtgatgaagtccggtggagtcaaaggagtgag--aaagacagtttgagagagaaagtgggaccaggggaccatcgcgagtgtggtggctgtgaagactctgagctctgggagctgacgttatttattggtgctcaaag----aaataggtggtgagtatgtctgggttgaaaggaaatggtgtctcaagtgaatgagaaacatatg
i macFas5.chr2                    C 0 I 60
s macNem1.NW_012010856v1             163704 280 -  11645122 ttccttcaccggggtctttgttgccccatgttaagagccaggaaAgttggagtgatcagacccaacactaggtcgtgggtgtgatgaagtccagtggagtcaaaggagtgag--aaagacagtttgagagagaaagtgggaccaggggaccatcgcgagtgtggtggctgtgaagactctgagctctgggagctgacgttatttattggtgctcaaag----aaataggtggtgagtatgtctgggttgaaaggaaatggtgtctcaagtgaatgagaaacatatg
i macNem1.NW_012010856v1          C 0 I 60
s cerAty1.NW_012001605v1             149013 280 -   6739814 ttccttcaccggggtctttgttgccccatgttaagagccaggaaAgttggagtgatcagacccaacactaggtcgtgggggtgatgaagtccggtggagtcaaaggagtgag--aaagacagtttgagagagaaagtgggaccaggggaccatcgcgagtgtggtggctgtgaagactctgagctctgggagctgacgttatttattggtgctcaaag----aaataggtggtgagtatgtctgggttgaaaggaaatggtgtctcaagtgaatgagaaacatatg
i cerAty1.NW_012001605v1          N 0 I 60
s manLeu1.NW_012099043v1             161166 280 -    785044 ttccttcaccggggtctttgttgccccatgttaaaagccaggaaagttggagtgatcagacccaacactaggtcgtgggggtgatgaagtccggtggagtcaaaggagtgag--aaagacagtttgagagagaaagtgggaccaggggaccatcgcgagtgtggtggctgtgaagactctgagctctgggagctgacattatttgttggtgctcaaag----aaataggtggtgagtatatctgggttgaaaggaaatggtgtctcaagtgaatgagaaacatatg
i manLeu1.NW_012099043v1          C 0 I 60
s colAng1.NW_012123820v1              49584 282 -  10971483 ttccttcaccggggtcttcgttgccccatgttgagagccaggaaAgttggagtgatcagacccaacactaggtcgtaggggtgatgaagtccggtggagtcaaaggaatgagaaaaagacagtttgagagagaaagtgggaccaggggaccatcgcgagtggggtggctgtgaagactctgagctctgggagctgacgctatttattggtgctcaaag----aaataggtggtgagtatgtctgggttgaaaggaaagggtgtctcaagtgaatgagaaacgtatg
i colAng1.NW_012123820v1          C 0 I 60
e nasLar1.chr2                       127572 466 + 181502896 I

a score=602988.000000
s hg38.chr14_GL000009v2_random       151391 110 +    201709 gccctgcctcagcttctcttccaacactcagcttttctcccaACAcattccccttatgaacaggaataaaataggga----tggctgttctcaccactcctgtttaacaagtcc
s panTro5.chr9                     41841367  91 + 116767853 gcCCTGC-------------------CTCAGCTTTTCTCCCAACAcattccccttatgaacaggaataaaataggga----tgcctgttctcaccactcctgtttaacaagtcc
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77802821 110 + 205426864 gccctgcctcagcttctctcccaacactcagcttttctcccaACAcattccccttaagaacaggaataaaataggga----tgcctgttctcaccactcctgttcaacaagtcc
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             212138 110 +    245036 gccctgcctcagcttctctcccaacactcagcttttctcccaACAcattccccttaagaacaggaataaaataggga----tgcctgttctcaccactcctgttcaacaagtcc
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    123845 110 -    139590 gccctgcctcagcttctctccgaacactcagcgtttctcccaACAcattctccttaagaacaggaataaaataggga----tggctgttctcaccactcctgttcaacaagtcc
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204245306 110 - 204787373 gccttgcctcagcttctctcccatcactcagtttttatcccaACAcattccccttaagaacaggaataaaataggga----tgcctgttcttaccactcctgttcaacaagtcc
i rheMac8.chr2                    I 60 C 0
s macFas5.chr2                       144531 110 - 192460366 gccttgcctcagcttctctcccatcactcagtttttatcccaACAcattccccttaagaacaggaataaaataggga----tgcctgttcttaccactcctgttcaacaagtcc
i macFas5.chr2                    I 60 C 0
s macNem1.NW_012010856v1             164044 110 -  11645122 gccttgcctcagcttctctcccatcactcagtttttatcccaACAcattccccttaagaacaggaataaaataggga----tgcctgttcttaccactcctgttcaacaagtcc
i macNem1.NW_012010856v1          I 60 C 0
s cerAty1.NW_012001605v1             149353 110 -   6739814 gccttgcctcagcttctctctcatcactcagtttttatcccaACAcattccccttaagaacaggaataaaataggga----tgcctgttcttaccactcctgttcaacaagtcc
i cerAty1.NW_012001605v1          I 60 C 0
s chlSab2.chr22                       38664 114 - 101219884 gccttgcctcagcttctctcccatcactcagtttttatcccaACAcattccccttaagaacaggaataaaatagggatgcctgcctgttcttaccactcctgttcaacaagtcc
i chlSab2.chr22                   N 0 C 0
s manLeu1.NW_012099043v1             161506 110 -    785044 accttgcctcagcttctctcccatcactcagtttttatcccaacacattccccttaagaacaggaataaaataggga----tgcctgttcttaccactcctgttcaacaagtcc
i manLeu1.NW_012099043v1          I 60 C 0
s colAng1.NW_012123820v1              49926 110 -  10971483 gccttgcctcagcttctctcccatcactcagtttttatcccaACAcattccccttaagaacaggaataaaataggga----catctgttcttaccactcctgttcaacaagtcc
i colAng1.NW_012123820v1          I 60 C 0
e nasLar1.chr2                       127572 466 + 181502896 I

a score=67162.000000
s hg38.chr14_GL000009v2_random       151501 10 +    201709 tagccagagc
s panTro5.chr9                     41841458 10 + 116767853 tagccagagc
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77802931 10 + 205426864 tagccagagc
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             212248 10 +    245036 tagccagagc
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    123955 10 -    139590 tagccacagc
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204245416 10 - 204787373 tagccagagt
i rheMac8.chr2                    C 0 C 0
s macFas5.chr2                       144641 10 - 192460366 tagccagagt
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             164154 10 -  11645122 tagccagagt
i macNem1.NW_012010856v1          C 0 C 0
s cerAty1.NW_012001605v1             149463 10 -   6739814 tagccagagt
i cerAty1.NW_012001605v1          C 0 C 0
s chlSab2.chr22                       38778 10 - 101219884 tagccagagc
i chlSab2.chr22                   C 0 C 0
s manLeu1.NW_012099043v1             161616 10 -    785044 tagccagagt
i manLeu1.NW_012099043v1          C 0 C 0
s nasLar1.chr2                       128038 10 + 181502896 tagccagagc
i nasLar1.chr2                    I 466 I 501
s colAng1.NW_012123820v1              50036 10 -  10971483 tagccagagc
i colAng1.NW_012123820v1          C 0 C 0

a score=844198.000000
s hg38.chr14_GL000009v2_random       151511 164 +    201709 aatcag---------------------------gcaagagaaagcgataaaaggcatccaaataagaaatgaagtcaaattatctctcttcactgatgatatgattctacacctagaaatccctaaagactgtgccaaaaggctcctagaactgataaaaaaaagtcttcagcaaactttcaggatt-aaaa
s panTro5.chr9                     41841468 163 + 116767853 aatcag---------------------------gcaagagaaagtgataaaaggcatccaaataggaaatgaagtcaaattatctctcttcactgatgatatgattctacacctagaaatccctaaagactgtgccaaaaggctcctagaacttataaaaaaaaaacttcagcaaactttcagga-t-aaaa
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77802941 161 + 205426864 aatcag---------------------------gcaagagaaagagataaaaggcatccaaataggaaatgaaatcaaattatctctcttcactgatgatatgattctacacctagaaaaccataaagactgtgccaaaaggctcctagaactgataaacaa----cttcagcaaagtttcaggattaaaaa
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             212258 159 +    245036 aatcag---------------------------gcaagagaaagagataaaaggcatccaaataggaaatgaa-tcaaattatctctcttca-tgatgatatgattctacacctagaaaaccataaagactgtgccaaaaggctcctagaactgataaacaa----cttcagcaaagtttcaggattaaaaa
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    123965 188 -    139590 agtcaggcaagagaaagagataaaaggcatccagcaagagaaagagataaaaggcatccaaataggaaatgaagtcaaattatctctcttcactgatgatatgattctacacctagaaaaccctaaagactgtgccaaaagactcctagaactgataagcaa----cttcagcaaagtttcaggataaaaga
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204245426 160 - 204787373 aatcag---------------------------gcaagagaaagagataaaaggcatcaaaataggaaataaagtcaaattatctttcttcactgatgatatgattctatacatagaaaaccctaaagaccatgctaaaaggttcctagaactgataaacaa----cttcagcaaagtttcaggattaaaa-
i rheMac8.chr2                    C 0 I 2
s macFas5.chr2                       144651 160 - 192460366 aatcag---------------------------gcaagagaaagagataaaaggcatcaaaataggaaataaagtcaaattatctttcttcactgatgatatgattctatacatagaaaaccctaaagaccatgctaaaaggttcctagaactgataaacaa----cttcagcaaagtttcaggattaaaa-
i macFas5.chr2                    C 0 I 2
s macNem1.NW_012010856v1             164164 160 -  11645122 aatcag---------------------------gcaagagaaagagataaaaggcatcaaaataggaaataaagtcaaattatctttcttcactgatgatatgattctatacatagaaaaccctaaagaccatgctaaaaggttcctagaactgataaacaa----cttcagcaaagtttcaggattaaaa-
i macNem1.NW_012010856v1          C 0 I 2
s cerAty1.NW_012001605v1             149473 160 -   6739814 aatcag---------------------------gcaagagaaagagataaaaggcatcaaaataggaaatgaagtcaaattatctctcttcactgatgatatgattctacacatagaaaaccctaaagaccatgctaaaaggtttctagaactgataaacaa----cttcagcaaagtttcaggattaaaa-
i cerAty1.NW_012001605v1          C 0 I 2
s chlSab2.chr22                       38788 160 - 101219884 aatcag---------------------------gcaagagaaagagataaaaggcatcaaaataggaaataaagtcaaattatctctcttcactgatgatatgattctacacatagaaaaccctaaagaccatgccaaaaggttcctagaactgataaacaa----cttcagcaaagtttcaggattaaaa-
i chlSab2.chr22                   C 0 I 2
s manLeu1.NW_012099043v1             161626 160 -    785044 aatcag---------------------------gcaagagaaagagataaaaggcatcaaaataggaaataaagtcaaattatctctcttcactgatgatatgattctacacatagaaaaccctaaagaccatgctaaaaggttcctagaactgataaacaa----cttcagcaaagcttcaggattaaaa-
i manLeu1.NW_012099043v1          C 0 I 2
s colAng1.NW_012123820v1              50046 160 -  10971483 aatcag---------------------------gcaagagaaagagataaaaggcatcgaaataggaaataaagtcaaattatctctcttcactgatgatatgattctacacatagaaaaccctaaagaccatgccaaaaggttcctagaactgataagcaa----cttcagcaaagtttcaggattaaaa-
i colAng1.NW_012123820v1          C 0 I 3
e nasLar1.chr2                       128048 501 + 181502896 I

a score=5005.000000
s hg38.chr14_GL000009v2_random       151675 1 +    201709 a
s panTro5.chr9                     41841631 1 + 116767853 a
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77803102 1 + 205426864 a
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             212417 1 +    245036 a
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    124153 1 -    139590 a
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204245588 1 - 204787373 a
i rheMac8.chr2                    I 2 C 0
s macFas5.chr2                       144813 1 - 192460366 a
i macFas5.chr2                    I 2 C 0
s macNem1.NW_012010856v1             164326 1 -  11645122 a
i macNem1.NW_012010856v1          I 2 C 0
s cerAty1.NW_012001605v1             149635 1 -   6739814 a
i cerAty1.NW_012001605v1          I 2 C 0
s chlSab2.chr22                       38950 1 - 101219884 a
i chlSab2.chr22                   I 2 C 0
s manLeu1.NW_012099043v1             161788 1 -    785044 a
i manLeu1.NW_012099043v1          I 2 C 0
e nasLar1.chr2                       128048 501 + 181502896 I
e colAng1.NW_012123820v1              50206 3 -  10971483 I

a score=1857018.000000
s hg38.chr14_GL000009v2_random       151676 338 +    201709 aaacaacatatagaaagaa------------------------gtatcatttctgtacaccaaaaatgtttaaactgagaggtaaatcaagagtgcaatcctgtttacaacagcaacccc----c---------------aaaagaaaagaaaagaaaagaagaatatgtctaagcaaggaggtaaatgatatctaaaaggagaactacaaaacactgcagaaaaaaatcatagatgacaaagcaaatggaaaactattccatgctcatggattagaaagatcaatattg-----ttaaaatggc-tatactgccaaaagcaatctacacattcaacactattcctatgaaacaacccatgtc-gtttttcacagaatt--agaaaaaaa
s panTro5.chr9                     41841632 342 + 116767853 aatcaacatatagaaagaa------------------------gtagcatttctgtacaccaaaaatgtttaaactgagaggtaaatcaagagtgcaatcctgtttacaacagcaacccc----c----------aaaataaaataaaataaaataaaagaagaatatgtctaagcaaggaggtaaaggatatctaaaaggagaactacaaaacactgcagaaagaaatcatagatgacaaagcaaatggaaaactattccatgctcatggattagaaagatcaatattg-----ttaaaatggc-tatactgccaaaagcaacctacacattcaacactattcctatgaaacaaccaatgtc-gtttttcacagaatt--agaaaaaa-
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77803103 354 + 205426864 aatcaacatacaaaaagaa------------------------gtagcatttccatacagcaaaaatgtttaaactgagaggtaaatcaagaatgcaatcctgtttacaatagcaacccc----caaaatagaataaaataaaataaaataaaataaagcaagaatatgtctaaccaaggaggtaaaggatatctaagaggagaactacaaaacactgcagaaagaaatcatagatgacaaaacaaatggaaaaccattccatgctcacggattagaaagatcaatattg-----ttaaaatggcttatactgccaaaagcaatctacacattcaacactattcctatcaaacaaccaatgtc-attttttacagaatt--agaaaaaaa
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             212418 347 +    245036 aatcaacacacaaaaagaa------------------------gtagcatttctgtacagcaaaaatgtttaaactgagaggtaaatcaagaatgcaatcctgtttacaatagcaacccc----c-----aaaatagaataaaataaaataaaataaagcaagaatatgtctaaccaaggaggtaaaggatatctaagaggagaactacaaaacactgcagaaag-aatcatagatgacaaaacaaatggaaaaccattccatgctcatggattagaaagatcaatattg-----ttaaaatggc-tataccgccaaaagcaatctacacattcaacactattcctatcaaacaaccaatgtt-gttttttacagaatt--agaaaaaaa
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    124154 367 -    139590 aatcaacattcaaaaagaagtagcatttctgtacaccaaaaatgtagcatttctgtacaccaaaaatgtttaaacagagaggtaaataaagaatgcaatcctgtttacaatagcaacccc----c---------------aaaataaaataaaataaaacaagaatatgtctaaccaaggaggtaaaggatatctaagaggagaactacaaaacactgcagaaagaaatcgtagatgacaaaac-aatggaaaaccattccattctcatggattagaaagatcaatattgttacattaaaatggc-tataatgccaaaagcaatctacaaattcaacactattcctatcaaacaatcaatgtcttttttttacagaatt--agaaaaaaa
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204245589 338 - 204787373 aatcaacaaacaaatagaa------------------------gtaacatttctgtacaccaaaaatgtttaaactgagaggtaaatcaagaatgcaatcctgtttacaatagcaacctc----c---------------aaaataagataaaataaaacaagaatatgtctaaccaaggaggtaaaggatatctaagaggagaactacaaaacactgcagaaagaaatcatagatgacaaaacaaatggaaaaccattccatgctcatggattagaaggatcaatattg-----ttaaaatggc-tatactgccaaaagcaatctacacattcaacactattcctatcaaacaaccaatgtc-atttttcacagaatt--agaaaaaaa
i rheMac8.chr2                    C 0 C 0
s macFas5.chr2                       144814 338 - 192460366 aatcaacaaacaaatagaa------------------------gtaacatttctgtacaccaaaaatgtttaaactgagaggtaaatcaagaatgcaatcctgtttacaatagcaacctc----c---------------aaaataagataaaataaaacaagaatatgtctaaccaaggaggtaaaggatatctaagaggagaactacaaaacactgcagaaagaaatcatagatgacaaaacaaatggaaaaccattccatgctcatggattagaaggatcaatattg-----ttaaaatggc-tatactgccaaaagcaatctacacattcaacactattcctatcaaacaaccaatgtc-atttttcacaaaatt--agaaaaaaa
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             164327 338 -  11645122 aatcaacaaacaaatagaa------------------------gtaacatttctgtacaccaaaaatgtttaaactgagaggtaaatcaagaatgcaatcctgtttacaatagcaacctc----c---------------aaaataagataaaataaaacaagaatatgtctaaccaaggaggtaaaggatatctaagaggagaactacaaaacactgcagaaagaaatcatagatgacaaaacaaatggaaaaccattccatgctcatggattagaaggatcaatattg-----ttaaaatggc-tatactgccaaaagcaatctacacattcaacactattcctatcaaacaaccaatgtc-atttttcacagaatt--agaaaaaaa
i macNem1.NW_012010856v1          C 0 C 0
s cerAty1.NW_012001605v1             149636 338 -   6739814 aatcaacaaacaaatagaa------------------------gtaacatttctgtacaccaaaaatgtttaaactgagaggtaaatcaagaatgcaatcctgtttacaatagcaacctc----c---------------aaaataagataaaataaaacaagaatatgtctaaccaaggaggtaaaggatatctaagaggagaactacaaaacactgcagaaagaaatcatagatgacaaaacaaatggaaaaccattccatgctcatggattagaaggatcaatattg-----ttaaaatggc-tatactgctaaaagcaatctgcacattcaacactattcctatcaaacaaccaatgtc-atttttcacagaatt--agaaaaaaa
i cerAty1.NW_012001605v1          C 0 C 0
s chlSab2.chr22                       38951 343 - 101219884 aatcagcaaacaaatagaa------------------------gtaacatttctgtacaccaaaaatgtttaaactgagaggtaaatcaagaatgcaattctgtttacaatagcaaccccaaaat---------------aaaataaaataaaataaaacaagaatatgtctatccaaggaggtaaaggatatctaagaggagaactacaaaacactgcagaaagaaatcatagatgacaaaacaaatggaaaaccattcca-gctcatggattagaaggatcaatatcg-----ctaaaatggc-tatactgccaaaagcaatctacacattcaacactattcctatcaaacaaccaatgtc-atttttcacagaattagaaaaaaaaa
i chlSab2.chr22                   C 0 C 0
s manLeu1.NW_012099043v1             161789 336 -    785044 aatcaacaaacaaatagaa------------------------gtaacatttctgtacaccaaaaatgtttaaactgagaggtaaatcaagaatgcaatcctgtttacaatagcaacctc----c---------------aaaataagataaaataaaacaagaatatgtctaaccaaggaggtaaaggatatctaagaggagaactacaaaacactgcagaaagaaatcatagatgacaaaacaaatggaaaaccattccatgctcatggattagaaggatcaatattg-----ttaaaatagc-tatactgccaaaagcaatctacacattcaacac--ttcctatcaaacaaccaatgtc-atttttcacagaatt--aaaaaaaaa
i manLeu1.NW_012099043v1          C 0 C 0
s colAng1.NW_012123820v1              50209 338 -  10971483 aatcaacaaacaaatagaa------------------------gtagcatttctgtacaccaaaaatgtttaaactgagaggtaaatccagaatgcaatcctgtttacaatagcaacccc----c---------------aaaataaaataaaataaaacaagaatatgtctaaccaaggaggtaaaggatatctaagaggagaactacaaaacactgcagaaacaaatcatagatgacaaaacaaatggaaaaccattccatgctcatggattagaaggatcaatattg-----ttaaaatggc-tatactgcaaaaagcaatctacacattcaacactattcctatcaaacaatcaatgtc-atttttcacagaatt--agaaaaaaa
i colAng1.NW_012123820v1          I 3 C 0
e nasLar1.chr2                       128048 501 + 181502896 I

a score=-80.000000
s hg38.chr14_GL000009v2_random       152014 2 +    201709 ta
s panTro5.chr9                     41841974 1 + 116767853 -a
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77803457 1 + 205426864 -c
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             212765 1 +    245036 -c
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    124521 2 -    139590 ac
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204245927 1 - 204787373 -a
i rheMac8.chr2                    C 0 I 1
s macFas5.chr2                       145152 1 - 192460366 -a
i macFas5.chr2                    C 0 I 1
s macNem1.NW_012010856v1             164665 1 -  11645122 -a
i macNem1.NW_012010856v1          C 0 I 1
s cerAty1.NW_012001605v1             149974 1 -   6739814 -a
i cerAty1.NW_012001605v1          C 0 I 1
s chlSab2.chr22                       39294 1 - 101219884 -a
i chlSab2.chr22                   C 0 I 1
s manLeu1.NW_012099043v1             162125 1 -    785044 -a
i manLeu1.NW_012099043v1          C 0 I 1
s nasLar1.chr2                       128549 2 + 181502896 aa
i nasLar1.chr2                    I 501 I 553
s colAng1.NW_012123820v1              50547 1 -  10971483 -a
i colAng1.NW_012123820v1          C 0 I 1

a score=1187046.000000
s hg38.chr14_GL000009v2_random       152016 211 +    201709 tattctaaatttcatatggatttttaaagagcccagacaaccaaaggaaacctaagc-aagaagaacaaagctggagacatcacattacttgacttcatactataccctaaggccacaatagacaaaatagcatggtagcgatatgaaaacagacacaaagaccaatgaaacagaatagagaaccccaaaataa--acatgcacctacagccat
s panTro5.chr9                     41841975 211 + 116767853 tattctaaatttcatatggatttttaaagagcccagacaaccaaaggaaacctaagc-aagaagaacaaagctggagacatcacattacttgacttcatactataccctaaggccacaatagacaaaatagcatggtagcgatatgaaaacagacaaaaagaccaatgaaacagaatagagaaccccaaaataa--acatgcacctacagccat
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77803458 214 + 205426864 tattctaaatttcatatggatttttaaagagcccagacaaccaaaggaaacctaagcaaaaaaaaacaaagctggagacatcacattacttgacttcatactatactctaaggccacagtagacaaagtagcatggtactgatatgaaaacagacacaaagaccaatgaaacagaatagagaaccccaaaataaacacatgcacctacagccat
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             212766 213 +    245036 tattctaaatttcatatggatttttaaagagcccagacaacaaaaggaaacctaagc-aaaaaaaacaaagctggagacatcacattacttgacttcatactatactctaaggccacagtagacaaaatagcatggtactgatatgaaaacagacacaaagaccaatgaaacagaatagagaaccgcaaaataaacacatgcacctacagccat
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    124523 208 -    139590 tattctaaatttcatatggatttttaaagagcccagacagccaaaggaaacctaagc-aaaaagaacaaagctgcagacatcacattacttgacttcatactg-----taaggccacaatagacaaaatagcatggtattgatatgaaaacagacacaaagaccaatgaaacagaatagagaaccccaaaataaacacatgcacctacagccat
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204245929 214 - 204787373 tattctaaaattcatatggatttttaaagagcccagaaaaccaaaggaaacctaagcaaaaaagaacaaagttggagacatcacattacttgacttcatactatactctaaggccacagtagacaaaacagcatggtactgatatgaaaacagacacaaagaccaatgaaacagaatagagaaccccaaaataaacacatgcacatacagccat
i rheMac8.chr2                    I 1 C 0
s macFas5.chr2                       145154 214 - 192460366 tattctaaaattcatatggatttttaaagagcccagaaaacaaaaggaaacctaagcaaaaaagaacaaagttggagacatcacattacttgacttcatactatactctaaagccacagtagacaaaacagcatggtactgatatgaaaacagacacaaagaccaatgaaacagaatagagaaccccaaaataaacacatgcacatacagccat
i macFas5.chr2                    I 1 C 0
s macNem1.NW_012010856v1             164667 214 -  11645122 tattctaaaattcatatggatttttaaagagcccagaaaaccaaaggaaacctaagcaaaaaagaacaaagttggagacatcacattacttgacttcatactatactctaaggccacagtagacaaaacagcatggtactgatatgaaaacagacacaaagaccaatgaaacagaatagagaaccccaaaataaacacatgcacatacagccat
i macNem1.NW_012010856v1          I 1 C 0
s cerAty1.NW_012001605v1             149976 214 -   6739814 tattctaaaattcatatggatttttaaagagcccagaaaaccaaaggaaacctaagcaaaaaagaaccaagttggagacatcacattacttgacttcatactatactctaaggccacagtagacaaaacagcatggtactgatatgaaaacagacacaaagaccaatgaaacagaatagagaaccccaaaataaacacatgcacatacagccat
i cerAty1.NW_012001605v1          I 1 C 0
s chlSab2.chr22                       39296 214 - 101219884 tgttctaaaattcatatagatttttaaagagcccagaaaaccaaaggaaacctaagcaaaaaagaacaaagttggagacatcacattacttgacttcatactatactctaaggccacagtagacaaaacagcatggtactgatatgaaaacagacacaaagagcaatgaaacagaatagagaaccccaaaataaacacatgcacatacagccat
i chlSab2.chr22                   I 1 C 0
s manLeu1.NW_012099043v1             162127 214 -    785044 tattctaaaattcatatggatttttaaagagcccagaaaaccaaaggaaacctaagcgaaaaagaaccaagttggagacatcacattacttgacttcatactatactctaaggccacagtagacaaaacagcatggtactgatatgaaaacagacacaaagaccaaggaaacagaatagagaaccccaaaataaacacatgcacatacagccat
i manLeu1.NW_012099043v1          I 1 C 0
s colAng1.NW_012123820v1              50549 209 -  10971483 tgttctaaaattcatatgggtttttaaagagcccagaaaaccaaaggaaacctaagcaaaagagaacaaagttggagacatcacattacctgacttcatacta-----taaggccacagtagacaaaacagcgtggcactgatatgaaaacagacacaaagaccaatgcaacagagtagagaaccccagaataaacacatgcacatacagccat
i colAng1.NW_012123820v1          I 1 C 0
e nasLar1.chr2                       128551 553 + 181502896 I

a score=1319894.000000
s hg38.chr14_GL000009v2_random       152227 214 +    201709 cAGCTTtcccaggataacacaaagagagccatgtggcacctgcacattacactgtggaagaaaaaac-caagctcaagaaacc-ccaacttgtattatgggaagttcacttggctgtacccttcccaagagggagaaattatctgcattatactagacag----------taaataaacttttcctttgttccagaaggaggtac------tggttttctattccaaggctg
s panTro5.chr9                     41842186 214 + 116767853 cAGCTTTCCCaggataacacaaagagagccaagtggcacctgcacattacactgtggaagaaaaacc-caagctcaagaaacc-ccaacttgtattatgggaagttcacttggctgtacccttcccaagagggagaaattatctgcattatactagacag----------taaataaacttttcctttgttccagaaggaggtac------tggttttctattccaaggctg
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77803672 213 + 205426864 cAGCTTtcccagggtaacacaaaaagagccaagcggcacctgcacattacactgtgggagaaaaacc-caagctcaagaaacc-ccaacttgtattatgggaagttcacttggctgtacccttccccagagggagaaattatctgcattatactagacag----------taaataaacttttcctttg-tccagaaggaggtac------tagttttctattccaaggctg
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             212979 214 +    245036 cAGCTTTCCCagggtaacacaaagagagccaagaggcacctgcacattacactgtaggagaaaaacc-caagctcaagaaacc-ccaacttgtattatgggaagttcacttggctgtacccttccccagagggagaaattatctgcattatactagacag----------taaataaacttttcctttgttccagaaggaggtac------tagttttctattccaacgctg
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    124731 214 -    139590 cAGCTTTCCCagggtaacacaaagggagccaagtggcacctacacattacacggtgggagaaaaatc-caagctcaagaaacc-ccagcttgtgttatgggaagttcacttggctgtatccttccccagagggagaaattatctgcattatactagacag----------taaataaaattttcctttgttccagaaggaggtac------tggttttctattccaaggctg
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204246143 220 - 204787373 cAGCTTtcccagggtaacacgaagagagccaagcggcttgtgcacattacactgtgggagaaaaacc-caagctcaagaaacc-ccaatttgtattatgggaagttcacttggctgtacctttccccagagagagaaattatctacattatactagacag----------caaataagcctttcctttgttccagaaggaggaacattccaaggctttctattccaaggctg
i rheMac8.chr2                    C 0 C 0
s macFas5.chr2                       145368 214 - 192460366 cAGCTTTCCCagggtaacacgaagagagccaagcggcttgtgcacattacactgtgggagaaaaacc-caagctcaagaaacc-ccaatttgtattatgggaagttcacttggctgtacctttccccagagagagaaattatctacattatactagacag----------caaataagcctttcctttgttccagaaggaggtac------tggttttctattccaaggctg
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             164881 214 -  11645122 cGGCTTTCCCagggtaacacgaagagagccaagcggcttgtgcacattacactgtgggagaaaaacc-caagctcaagaaacc-ccaatttgtattatgggaagttcacttggctgtacctttccccagagagagaaattatctacattatactagacag----------caaataagcctttcctttgttccagaaggaggtac------tggttttctattccaaggctg
i macNem1.NW_012010856v1          C 0 C 0
s cerAty1.NW_012001605v1             150190 214 -   6739814 cAGCTTTCCCagggtaacacgaacagagccaagcggcatgtgcacattacactgtgggagaaaaact-caagctcaagaaacc-ccaatttgtattatgggaagttcacttggctgtacctttccccagagagagaaattatctacattatactagacag----------caaataagcctttcctttgttccagaaggaggtac------tggttttctattccaaggctg
i cerAty1.NW_012001605v1          C 0 C 0
s chlSab2.chr22                       39510 214 - 101219884 cAGCTTTCCCagggtaacatgaagagagccaagtggaacgtgcacattacactatgggagaaaaacc-caagctcaagaaacc-ccaatttgtattatgggaagttcacttggctgtacctttccccagagaaagaaattatctacattatactagacag----------caaataagcttttcctttgttccagaaggaggtac------tagttttctattccaaggctg
i chlSab2.chr22                   C 0 C 0
s manLeu1.NW_012099043v1             162341 214 -    785044 cAGCTTTCCCagggtaacacgaagagagccaagcggcatgtgcacattacactgtgggagaaaaaac-caaactcaagaaacc-ccaatttgtattacgggaagttcacttggctgtacctttccccagagagagaaattatccacattatactagacag----------caaataagcctttcctttgttccagaaggaggtac------tggttttctattccaaggctg
i manLeu1.NW_012099043v1          C 0 C 0
s colAng1.NW_012123820v1              50758 214 -  10971483 cAGCTTTCCCagggtaacacaaagagagccaagtggcacgtgcacatttcactgtgggagaaaaacc-caagctcaagaaacc-ccaatttgtattatgggaagttcacgtggctgtacctttccccagagagagaaattatctacattatactaaacag----------taaataagcttttcctttgttccagaaggaggtac------tggttttctattccaaggctg
i colAng1.NW_012123820v1          C 0 C 0
s canFam3.chr31                    28764483 224 -  39895921 caactttcacagggcaacacaaaggg-gtcaagcgatgcttgcccatggtactgtagaagtacagccacaagtttagggaacctccatcttttattat-gaatgttcatttgccaagacttttccccagagaaagacattctctaaattatactggacagtaaacaagcctaaacaagcttttcctttgctccagaaggagacac------taattctatattccaaggctg
i canFam3.chr31                   N 0 C 0
e nasLar1.chr2                       128551 553 + 181502896 I

a score=742772.000000
s hg38.chr14_GL000009v2_random       152441 125 +    201709 ttttctatacaaacatgcttgaaaa--caatcatttggaacaagaaagtcagcgtccatacttgcaaaatgtgcagaaattaaagagacaaaaaaactgtttctctacCAATTTCTATTTTTTTAAA
s panTro5.chr9                     41842400 125 + 116767853 ttttctatacaaacatgcttgaaaa--caatcatttggaacaagaaagtcagcgtccatacttgcaaaatgtgcggaaattaaagagacccaaaaactgtttctctacCAATTTCTATTTTTTAAAA
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77803885 125 + 205426864 ttttccatacaaacatgcttgaaaa--caatcatttggaacaagatagtcagcatccatacttgcaaaatgtgcagaagttaaagagacccaaaaattgtttATCTACCAATTTCTATTTTTTTAAA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             213193 122 +    245036 ttttccatacaaacatgcttgaaaa--caatcatttggaacaagatagtcagcgtccatacttgcaaaatgtgcggaagtt--agagacccaaaaattgtttATCTACCAATTCCTATTTTTTT-AA
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    124945 121 -    139590 ttttctatacaaacatgcttgaaaa--caatcatttggaacaagatagtcagcgtccacatttgcaaaatgtgcggaaattaaagagacccaaaaattgtttctctacCAATTTCTATTTTT----A
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204246363 125 - 204787373 ttttctatacaaacatgcttgaaaa--caatcatttggaacaagatagtcagtgtccatacatgcaaaatgtgcagaaattaaacagacccaaaaattgtttctctacCAATTTCTATTTTTTAAAA
i rheMac8.chr2                    C 0 C 0
s macFas5.chr2                       145582 125 - 192460366 ttttctatacaaacatgcttgaaaa--caatcatttggaacaagatagtcagtgtccatacttgcaaaatgtgcagaaattaaacagacccaaaaattgtttctctacCAATTTCTATTTTTTAAAA
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             165095 125 -  11645122 ttttctatacaaacatgcttgaaaa--caatcatttggaacaagatagtcagtgtccatacttgcaaaatgtgcagaaattaaacagacccaaaaattgtttctctacCAATTTCTATTTTTTAAAA
i macNem1.NW_012010856v1          C 0 C 0
s cerAty1.NW_012001605v1             150404 125 -   6739814 ttttctatacaaacatgcttgaaaa--caatcatttggaacaagatagtcagtgtccatacttgcaaaatgtgcagaaattaaacagacccaaaaattgtttctctacCAATTTCTATTTTTTAAAA
i cerAty1.NW_012001605v1          C 0 C 0
s chlSab2.chr22                       39724 125 - 101219884 ttttctatacaaacatgcttgaaaa--caatcatttggaacaagatagtcagtgtctatacttgcaaaatgtgcagaaattaaacagacccaaaaattgtttctctacCAATTTCTATTTTTAAAAA
i chlSab2.chr22                   C 0 C 0
s manLeu1.NW_012099043v1             162555 125 -    785044 ttttctatacaaacatgcttgaaaa--caatcatttggaacaagatagtcagtgtccatacttgcaaaatgtgcagaaattaaacagacccaaaaattgtttctctacCAATTTCTATTTTTTAAAA
i manLeu1.NW_012099043v1          C 0 C 0
s colAng1.NW_012123820v1              50972 125 -  10971483 ttttctatacaaacatacttgaaaa--caaccatttggaacaagatagtcagtgtccatacttgcaaaatgtgcagaaattaaacagacccaaaaatcgtttctctacCAATTTCTATTTTTTAAAA
i colAng1.NW_012123820v1          C 0 C 0
s canFam3.chr31                    28764707 108 -  39895921 ttttctatacagacattgttgaaaaggtattca-----aacaaggcagccagtg------cttgcaaattgtgcggaaatcagac--acccaAGAGC-----ACCCTCCTAATCCAGTTTATTAAA-
i canFam3.chr31                   C 0 I 4
s dasNov3.JH568778                  6662195 118 +   6883506 tttgatatacaaacagccttaaaaa--ta-tattccaagacaaggtggtcagtgcttctgttttccagtcatgcaaaaatgtgagcgactcaagaatttgtgtccaaaAAAATCC----CTTTAA--
i dasNov3.JH568778                N 0 C 0
e nasLar1.chr2                       128551 553 + 181502896 I

a score=8281.000000
s hg38.chr14_GL000009v2_random       152566 1 +    201709 A
s panTro5.chr9                     41842525 1 + 116767853 A
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77804010 1 + 205426864 A
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             213315 1 +    245036 A
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    125066 1 -    139590 A
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204246488 1 - 204787373 A
i rheMac8.chr2                    C 0 C 0
s macFas5.chr2                       145707 1 - 192460366 A
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             165220 1 -  11645122 A
i macNem1.NW_012010856v1          C 0 C 0
s cerAty1.NW_012001605v1             150529 1 -   6739814 A
i cerAty1.NW_012001605v1          C 0 C 0
s chlSab2.chr22                       39849 1 - 101219884 A
i chlSab2.chr22                   C 0 C 0
s manLeu1.NW_012099043v1             162680 1 -    785044 A
i manLeu1.NW_012099043v1          C 0 C 0
s nasLar1.chr2                       129104 1 + 181502896 A
i nasLar1.chr2                    I 553 I 302
s colAng1.NW_012123820v1              51097 1 -  10971483 A
i colAng1.NW_012123820v1          C 0 C 0
s dasNov3.JH568778                  6662313 1 +   6883506 A
i dasNov3.JH568778                C 0 C 0
e canFam3.chr31                    28764815 4 -  39895921 I

a score=1222788.000000
s hg38.chr14_GL000009v2_random       152567 195 +    201709 TCACATTTTCCCCATATAATATGCTTTTAATATGTGATAATATTCTGAAATTGTCTTAGCATTTACCCCCATTTCTGAGTCCAGAAGGATACAATA-----AATTTAATTTAATTTAGTAACACTTC-AAATAGTAGTGATTGTAATAGC--AGAGCTAG----T----TTGTAGCATAAAGAAAAAATAATAATATTATTAGGTGAC----ACA---
s panTro5.chr9                     41842526 193 + 116767853 TCACATTTTCCCCATATAATATGCTTTTAATACGTGATAATATTCTGAAATTGTCTTAGCATTTACCCCCATTTCTGAGTCCAGAAGGATACAATG-----AATTTAATTTAATTTAGTAACACTTC-AAATAGTAGTGATTGTAATAGC--AGAGCTAG----T----TTGTAGCATAAAGAAAAA--AATAATATTATTAGGTGAC----ACA---
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77804011 195 + 205426864 TCATATTGTCCCCATATAATATGCTTTCAATATGTGATCATATTCTGAAATTGTCTTAGCATTTACCCCCACTTCTGAGTCCAGAAGGATACAATA-----AATTTAATTTAATTTAGTAACACTTC-AAATAGTAGTGATTGTAATAGC--AGAGCTAG----T----TTGTAGCATAAAGAAAAAATAATAATATTATTAGGTGAC----ACA---
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             213316 199 +    245036 TCATATTTTCCCCATATAATATGCTTTTAATATGTGATCATATTCTGAAATTGTCTTAGCATTTACCCCCACTTCTGAGTCCAGAAGGATACAATA-----AATTTAATTTAATTTAGTAACACTTC-AAATAGTAGTGATTGTAATAGC--AGAGCTAG----T----TTGTAGCATAAAGAAAAAATAATAATATTATTAGGTGACACTTACA---
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    125067 195 -    139590 TCATATTTTCCCCATATAATATGCTTTTAATACATGATCATATTCTGAAATTGTCTTAGCATTTACCCCAACTTCTGAGTCCAGAAAGATACAATA-----AATTTAATTTAATTTATTAACACTTC-AAATAGTAGTGATTCTAATAGC--AGAGCTAG----T----TTGTAGCATAAAGAAAAAATAATAATATTATTAGGTGAC----ACA---
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204246489 197 - 204787373 TCATATTTTCCCCATTTAATATGCTTTTAATATGTGATTATATCCTGAAATTGTCTTAGCAATTACCCCCACTTCTGAGTCCAGAAGGATACAATAAATTTAATTTAATTTAATTTAGTAACACTTC-AAATTGTAGTGATTCTAATAGG--AGAGCTAG----T----TTGTAGCATAAAGAAAA---AATAATATTATTAGGTGAC----ACA---
i rheMac8.chr2                    C 0 I 4
s macFas5.chr2                       145708 197 - 192460366 TCATATTTTCCCCATTTAATATGCTTTTAATATGTGATTATATCCTGAAATTGTCTTAGCAATTACCCCCACTTCTGAGTCCAGAAGGATACAATAAATTTAATTTAATTTAATTTAGTAACACTTC-AAATTGTAGTGATTCTAATAGG--AGAGCTAG----T----TTGTAGCATAAAGAAAA---AATAATATTATTAGGTGAC----ACA---
i macFas5.chr2                    C 0 I 4
s macNem1.NW_012010856v1             165221 197 -  11645122 TCATATTTTCCCCATTTAATATGCTTTTAATATGTGATTATATCCTGAAATTGTCTTAGCAATTACCCCCACTTCTGAGTCCAGAAGGATACAATAAATTTAATTTAATTTAATTTAGTAACACTTC-AAATTGTAGTGATTCTAATAGG--AGAGCTAG----T----TTGTAGCATAAAGAAAA---AATAATATTATTAGGTGAC----ACA---
i macNem1.NW_012010856v1          C 0 I 4
s cerAty1.NW_012001605v1             150530 197 -   6739814 TCATATTTTCCCCATTTAATATGCTTTTAATATGTGATTATATCCTGAAATTGTCTTAGCAATTACCCCCACTTCTGAGTCCAGAAGGATACAATAAATTTAATTTAATTTAATTTAGTAACACTTC-AAATTGTAGTGATTCTAATAGG--AGAGCTAG----T----TTGTAGCATAAAGAAAA---AATAATACTATTAGGTGAC----ACA---
i cerAty1.NW_012001605v1          C 0 I 4
s chlSab2.chr22                       39850 197 - 101219884 TCATATTTTCCCCAATTAATATGCTTTTAATATGTGATCATATCCTGAAATTGTCTTAGCAATTACCCCTACTTCTGAGTCCAGAAGGATACAATACATTTAATTTAATTTAATTTAGTAACACTTC-AAATTGTAGTGATTCTAATAGC--AGAGCTAG----T----TTGTAGCATAAAGAAAA---AATAATATTATTAGGTGAC----ACA---
i chlSab2.chr22                   C 0 I 4
s manLeu1.NW_012099043v1             162681 197 -    785044 TCATATTTTCCCCATTTAATATGCTTTTAATATGTGATTATATCCTGAAATTGTCTTAGCAATTACCCCCACTTCTGAGTCCAGAAGGATACAATAAATTTAATTTAATTTAATTTAGTAACACTTC-AAATTGTAGTGATTCTAATAGG--AGAGCTAG----T----TTGTAGCATAAAGAAAA---AATAATATTATTAGGTGAC----ACA---
i manLeu1.NW_012099043v1          C 0 I 4
s colAng1.NW_012123820v1              51098 197 -  10971483 TCATATTTTCCCCATTTAATATGCTTTTAATATGTGATCATATCCTGAAATTGTCTTAGCAATTACCCCCACTTCTGAGTCCAGAAGGATACAATAAATTTAATTTAATTTAATTTAGTAACACTTC-AAATTGTAGTGATTCTAATAGC--AGAGCTAG----T----TTGTAGCACAAAGAAAA---AATAATATTATTAGGTGAC----ACA---
i colAng1.NW_012123820v1          C 0 I 301
s canFam3.chr31                    28764819 198 -  39895921 CTCTTTTTCTACAAAATTATACATCTTTAATATGCTCTCATATTCTAAAATGGTATTAAGAATTACTCTAATTTCTGAGTCTAGGAGGATACTATG-----AATTTAATTTTATTTAGTGCTACTTT-AAATACAAATGATAGAAACAAC--TAAGTTATTATCT----TTATATTATGAAAAAAACCCCA-AATATTGTGAGATGAC----ATA---
i canFam3.chr31                   I 4 I 4
s dasNov3.JH568778                  6662314 205 +   6883506 TTAGTTTTGTCCACCGTAATATGCCTTTACTGTATTATCACATTCTGAAATGGTATTATGAATTAGAAAAATTTCCGAGTCCAGAAGGACAATATG-----AATTTAATTTTATTTAGTATTACTTTGAAATAGTAGTGATTGGAATACCTATGAGTCAA----TAAAATTTTGGTAGTAAGATAAAATAAAAATATTGTGAAGTGAC----ATTATA
i dasNov3.JH568778                C 0 C 0
e nasLar1.chr2                       129105 302 + 181502896 I

a score=318962.000000
s hg38.chr14_GL000009v2_random       152762 59 +    201709 AATAATGCTAGCCACCATTTCTAAGTGTCATGGTAAGTACAGTGATTATTTTC---------TTTTTT
s panTro5.chr9                     41842719 59 + 116767853 AATAATGCTAGCCACCATTTCTAAGTGTCATGGTAAGTACAGTGAttattttc---------tttttt
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77804206 59 + 205426864 AATAATACTAGTCATCATTTGTAAGTGTCATGGTAAGTACAGTGAttattttc---------ttttct
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             213515 59 +    245036 AACAATACTAGTCACCATTTGTAAGTGTCATGGTAAGTACAGTGATTATTTTC---------TTTTCT
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    125262 59 -    139590 AATAATGTTAGTCACCATTTGTAAGTGTCATGGTAAGTATGATGATTATTTTC---------TTTTTT
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204246690 68 - 204787373 AATAATGCTAGTCACCATTTGTAAGTGTCATGGTAAGTACAGTGATTACtttgttttttttttttttt
i rheMac8.chr2                    I 4 C 0
s macFas5.chr2                       145909 64 - 192460366 AATAATGCTAGTCACCATTTGTAAGTGTCATGGTAAGTACAGTGATTACtttg----ttttttttttt
i macFas5.chr2                    I 4 C 0
s macNem1.NW_012010856v1             165422 63 -  11645122 AATAATGCTAGTCACCATTTGTAAGTGTCATGGTAAGTACAATGATTACTTTG-----TTTTTTTTTT
i macNem1.NW_012010856v1          I 4 C 0
s cerAty1.NW_012001605v1             150731 60 -   6739814 AATAATGCTAGTCACCATTTGTAAGTGTCATGGTAAGTACAGTGATTACTTTC--------TTTTTTT
i cerAty1.NW_012001605v1          I 4 C 0
s chlSab2.chr22                       40051 58 - 101219884 AATAATGCTAGTCACCATTTGTAAGTGTCATGGTAAGTACAGTGATTACTTTC----------TTTTT
i chlSab2.chr22                   I 4 C 0
s manLeu1.NW_012099043v1             162882 61 -    785044 AATAATGCTAGTCACCATTTGTAAGTGTCATGGTAAGTACAGTGATTACTTTC-------TCTTTTTT
i manLeu1.NW_012099043v1          I 4 C 0
s colAng1.NW_012123820v1              51596 53 -  10971483 AATAATGCTAGTCACCATTTGTAAGTGTCATGGTAAGTACAGTGATTACTTTC---------------
i colAng1.NW_012123820v1          I 301 C 0
s canFam3.chr31                    28765021 59 -  39895921 AATAATGCCAGTCATCATTCCTAGTTGCAGTAGGGTGTGTAGTGTTTATTTTC---------TGTTTT
i canFam3.chr31                   I 4 I 428
s dasNov3.JH568778                  6662519 34 +   6883506 AGTAATGGCAGTAATCATTGCTATTTGTAATAAT----------------------------------
i dasNov3.JH568778                C 0 C 0
e nasLar1.chr2                       129105 302 + 181502896 I

a score=218153.000000
s hg38.chr14_GL000009v2_random       152821 56 +    201709 TCTGACTCTTTTTTATTGTATTTTTTA-ttttttttcccataggttattggggtacg
s panTro5.chr9                     41842778 55 + 116767853 tctgact-tattttattttatttttta-ttttttttcccataggttattggggtacg
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77804265 54 + 205426864 tccgactcttttttatttta--tttta-ttttattttccataggttattggggtacg
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             213574 51 +    245036 TCTGACTCTTTTTTATTTTA---ttta-ttttttt--ccataggttactggggtacg
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    125321 54 -    139590 TCTGACTCTTTTTTATTTTATTTTTTA-ttttttt--tcataggttattctggtacg
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204246758 52 - 204787373 ttggactcttttttattttA--Ttttattttttt---ccataggttattggggtaca
i rheMac8.chr2                    C 0 I 1
s macFas5.chr2                       145973 51 - 192460366 ttggactcttttttattttA--tttta-tttttt---ccataggttattggggtaca
i macFas5.chr2                    C 0 I 1
s macNem1.NW_012010856v1             165485 51 -  11645122 TTGGACTCTTTTTTATTTTA--tttta-tttttt---ccataggttattggggtaca
i macNem1.NW_012010856v1          C 0 I 1
s cerAty1.NW_012001605v1             150791 51 -   6739814 TTGGACTCTTTTTTATTTTA--tttta-tttttt---ccataggttattggggtaca
i cerAty1.NW_012001605v1          C 0 I 1
s chlSab2.chr22                       40109 49 - 101219884 TTGGACTC--TTTTATTTTA--tttta-tttttt---ccataggttattgggataca
i chlSab2.chr22                   C 0 I 1
s manLeu1.NW_012099043v1             162943 51 -    785044 TTGGACTCTTTTTTATTTTA--tttta-tttttt---ccataggttattgaggtaca
i manLeu1.NW_012099043v1          C 0 I 1
s colAng1.NW_012123820v1              51649 42 -  10971483 ---------TTTTTATTTTA--tttta-tttttt---ccataggttattggggtaca
i colAng1.NW_012123820v1          C 0 I 1
e nasLar1.chr2                       129105 302 + 181502896 I
e canFam3.chr31                    28765080 428 -  39895921 I
e dasNov3.JH568778                  6662553  0 +   6883506 C

a score=7800.000000
s hg38.chr14_GL000009v2_random       152877 1 +    201709 g
s panTro5.chr9                     41842833 1 + 116767853 g
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77804319 1 + 205426864 g
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             213625 1 +    245036 g
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    125375 1 -    139590 g
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204246811 1 - 204787373 g
i rheMac8.chr2                    I 1 C 0
s macFas5.chr2                       146025 1 - 192460366 g
i macFas5.chr2                    I 1 C 0
s macNem1.NW_012010856v1             165537 1 -  11645122 g
i macNem1.NW_012010856v1          I 1 C 0
s cerAty1.NW_012001605v1             150843 1 -   6739814 g
i cerAty1.NW_012001605v1          I 1 C 0
s chlSab2.chr22                       40159 1 - 101219884 g
i chlSab2.chr22                   I 1 C 0
s manLeu1.NW_012099043v1             162995 1 -    785044 g
i manLeu1.NW_012099043v1          I 1 C 0
s nasLar1.chr2                       129407 1 + 181502896 g
i nasLar1.chr2                    I 302 I 355
s colAng1.NW_012123820v1              51692 1 -  10971483 g
i colAng1.NW_012123820v1          I 1 C 0
e canFam3.chr31                    28765080 428 -  39895921 I
e dasNov3.JH568778                  6662553 0 +   6883506 C

a score=975039.000000
s hg38.chr14_GL000009v2_random       152878 179 +    201709 tggtatttggttccatgaataacttctttactggttatttttgagatttgggtgcacccatcacccgagcagtgtacactgcaccttatttgttatcttttatcccttgccccccacccTATTAAA-TAATAGACAAAAAATAATGGGTTTAGAATAAATGAGTTCAA--ATGAATTGTCAA
s panTro5.chr9                     41842834 179 + 116767853 tggtatttggttccatgaataacttctttactggttatttgtgagatttgggtgcacccatcacccgaacagtgtacactgcaccttgtttgttatcttttatccctcgcccccctccctattaaa-ttataGACAAAAAATAATGCATTTAGAATAAATGAGTTCAA--ATGAATTGTCAA
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77804320 179 + 205426864 tggtatttggtttcatgagtaagttctttagtggtgatttgtgagattttggtgcatccaccaccctagcagtgtacactgcaccctatttgtaatcttttatccctcacccccctcccTATTAAA-TAATAGACAAAAAATAATGGGTTTAGAATAAATGAGTTCAA--ATAAATTGTCAA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             213626 179 +    245036 tggtatttggttccataagtaagttctttagtggtgatttgtgagattttggtgcatccatcacccgagcagtgtacactgcaccctatttgtaatcttttatccctcgccccactcccTATTAAA-TAATAGACAAAAAATAATGGGTTTAGAATAAATGAGTTCAA--ATAAATTGTCAA
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    125376 179 -    139590 tggtatttggttccatgagtaagttctttagtggtgatttgtgagattttggtgcgcccatcacccaagcagtgtacactgcaccctatttataatcttttatccctcgctcccctcccTATTAAA-TAATAGACAAAAAATAATGGGTTTAGAATAAATCAATTCAA--ATAAATTTTCAA
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204246812 179 - 204787373 tggtatttggttacatgaataatttacttagtggtgatttgtgagattttggtgcacccatcacccaagcagtatacactgcaccctatttgtagtcttttatcccttgcccctctcccTATAAAA-TAATAGACAAAAAATAATGGGTTTAGAATAAATGAGCTCAA--GTAAATTGTCAA
i rheMac8.chr2                    C 0 C 0
s macFas5.chr2                       146026 179 - 192460366 tggtatttggttacatgaataagttacttagtggtgatttgtgagattttggtgcacccatcacccaagcagtatacactgcaccctatttgtagtcttttatcccttgcccctctcccTATAAAA-TAATAGACAAAAAATAATGGGTTTAGAATAAATGAGCTCAA--GTAAATTGTCAA
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             165538 179 -  11645122 tggtatttggttacatgaataagttacttagtggtgatttgtgagattttggtgcacccatcacccaagcagtatacactgcaccctatttgtagtcttttatcccttgcccctctcccTATAAAA-TAATAGACAAAAAATAATGGGTTTAGAATAAATGAGCTCAA--GTAAATTGTCAA
i macNem1.NW_012010856v1          C 0 C 0
s cerAty1.NW_012001605v1             150844 179 -   6739814 tggtatttggttacatgaataagttacttagtggtgatttgtgagattttggtgcacccatcacccaagcagtatacactgcaccctatttgtagtcttttatcccttgcccctctcccTATAAAA-TAATAGACAAAAAATAATGGGTTTAGAATAAATGAGTTCAA--GTAAATTGTCAA
i cerAty1.NW_012001605v1          C 0 C 0
s chlSab2.chr22                       40160 179 - 101219884 tggtgtttggttacatgaataagttacttagtggtgatctgtgagattttggtgcacccatcacccaagcagtgtacactgcaccctatttgtagtcttttatcccttgcccccctcccTATAAAA-TAATAGACAAAAAATAATGGGTTTAGAATAAATGAGTTCAA--GTAAATTGTCAA
i chlSab2.chr22                   C 0 C 0
s manLeu1.NW_012099043v1             162996 179 -    785044 tggtatttggttacatgaataagttacttagtggtgatttgtgagattttggtgcacccatcacccaagcagtatacactgcaccctatctgtagtcttttatcccttgcccctctcccTATAAAA-TAATAGACAAAAAATAATGGGTTTAGAATAAATGAGTTCAA--GTAAATTGTCAA
i manLeu1.NW_012099043v1          C 0 C 0
s colAng1.NW_012123820v1              51693 179 -  10971483 tggtatttggttacatgaataagttacttagtggtgatttgtgagattttggtgcacccattacccaagcagtatacactgcaccctatttgtagtcttttatcccttgcccccctcccTATAAAA-TAATAGACAAAAAATAATGGGTTTAGAATAAATGAGTTCAA--GTAAATTGTCAA
i colAng1.NW_012123820v1          C 0 C 0
s dasNov3.JH568778                  6662553  76 +   6883506 -------------------------GTTTGATGATGATCTGT-----------------------------------------------------------------------------TATAAAATTAATAGACAGCAAA----GTGATTAGAATGCATGAGCTAAATGGTAAAGTTTCAA
i dasNov3.JH568778                C 0 C 0
e nasLar1.chr2                       129408 355 + 181502896 I
e canFam3.chr31                    28765080 428 -  39895921 I

a score=1129905.000000
s hg38.chr14_GL000009v2_random       153057 177 +    201709 ACTTATGTGGGAAAAG-TGGAATCAGTTTGTGAGAAAAAGCAAAAAACTCAACAGAAATGCTGATAAAGCATCATCCCTTCATGGCTAGAGCTGCCAGGACACTAGAACACCAAAATCAGCTAGGGAAATTTTGTAGAAGTCCCAGATGTACTAAATGTTCTG---TGAATACACAGAGAT
s panTro5.chr9                     41843013 177 + 116767853 ACATATGTGGGAAAAG-TGGAATCAGTTTGTGAGAAAAAGCAAAAAACTCAACAGAAATGCTGATAAAGCATCATCCCTTCATGGCTAGAGCTGCCAGGACACTAGAACACCAAAATCAGCTAGGGAAATTTTGTAGAAGTCCCAGATGTACTAAATGTTCTG---CGAATACACAGAGAT
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77804499 176 + 205426864 ACCTATGTGGGAAAAG-TGGAATCGGTTTCTGAGAAAAAGC-AAAAACTCAACAGAAATGCTGATAAAGCATCATCCCTTCACGGCTAGAGCTGCCAGGACACCAGAACACCAAAATCAGCTAGGGAAATTTTGTAGAAGTCCTACATGTACTAATTGTTCTG---TGAATACACAGAGAT
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             213805 177 +    245036 ACATATGTGGGAAAAG-TGGAATCGGTTTCTGAGAAAAAGCAAAAAACTCAACAGAAATGCTGATAAAGCATCATCCCTTCATGGCTAGAGCTGCCAGGACACCAGAACGCCAAAATCAGCTAGGGAAATTTTGTAGAAGTCCTACATGTACTCATTGTTCTG---TGAATACACACAGTT
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    125555 177 -    139590 ACGTATGTGGGAAAAG-TGGAATCAGTTTCTGAGAAAACGCAAAAAACTCAACAGAAATGCTCATAAAGCACCATCCCTTCATGGCTAGAGCTGCCAGGACACCAGAACACCAAAATCAACTAGAGAAATTTTGTAGAAGTCCTAGATGTACTAATTGTTCTC---TGAATACACAGAGAT
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204246991 177 - 204787373 ATGTATGTGGGATAAG-TGGAATCAGTTTCTGAGAAAAAGCAAAAAACTCAACAGAAATGCTCATAAAGCATCATCCCTTCATGGCTGGAGCTGCCAGGACACCAGAACACCAGGGTCAGCCAGGGACATTTTGTAGAAGTCCTAGATGTACTCACTGCTCTG---TGAATACACAGAGAT
i rheMac8.chr2                    C 0 C 0
s macFas5.chr2                       146205 177 - 192460366 ATGTATGTGGGATAAG-TGGAATCAGTTTCTGAGAAAAAGCAAAAAACTCAACAGAAATGCTCATAAAGCATCATCCCTTCATGGCTGGAGCTGCCAGGACACCAGAACACCAGGGTCAGCCAGGGACATTTTGTAGAAGTCCTAGATGTACTCACTGCTCTG---TGAATACACAGAGAT
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             165717 177 -  11645122 ATGTATGTGGGATAAG-TGGAATCAGTTTCTGAGAAAAAGCAAAAATCTCAACAGAAATGCTCATAAAGCATCATCCCTTCATGGCTGGAGCTGCCAGGACACCAGAACACCAGGGTCAGCCAGGGACATTTTGTAGAAGTCCTAGATGTACTAACTGCTCTG---TGAATACACAGAGAT
i macNem1.NW_012010856v1          C 0 C 0
s cerAty1.NW_012001605v1             151023 177 -   6739814 ATGTATGTGGGATAAG-TGGAATCAGTTTCTGAGAAAAAGCAAAAAACTCAACAGAAGTGCTCATAAAGCATCATCCCTTCATGGCTGGAGCTGCCAGGACACCAGAACACCAGGGTCAGCCAGGGACATTTTGTAGAAGTCCTAGATGTACTAACTGCTCTG---TGAATACACAGAGAT
i cerAty1.NW_012001605v1          C 0 C 0
s chlSab2.chr22                       40339 176 - 101219884 ATGTATGTGGGATAAG-TGGAATCAGTTTCTAAGAAAAAGCAAAAAACTCAACAGAAATGCTCATAAAGCATCATCCCTTCATGGCTGGAGCTGCCAGGACA-CAGAACACCAGGATCAGCTAGGGACATTTTGTAGAAGTCCTAGATGTACTAACTGCTCTG---TGAATACACAGAGAT
i chlSab2.chr22                   C 0 C 0
s manLeu1.NW_012099043v1             163175 177 -    785044 ATGTATGTGGGATAAG-TGGAATCAGTTTCTGAGAAAAAGCAAAAAACTCAACAGAAATGCTCATAAAGCATCATCCCTTCATGGCTGGAGCTGCCAGGACACCAGAACACCAGGGTCAGCCAGGGACATTTTGTAGAAGTCCTAGATGTACTAACTGCTCTG---TGAATACACAGAGAT
i manLeu1.NW_012099043v1          C 0 C 0
s colAng1.NW_012123820v1              51872 177 -  10971483 ATGTATATGGGATAAG-TGGAATCAGTTTCTGAGAAAAAGCAAAAAACTCAACAGAAATGCTCATAAAGCATCATCCCTTCATGGCTGGAGCTGCCAGGACACCGGAACACCAGGATCAGCTAGGGACATTTTGTAGAAGTCCTAGAGGTACTAACTGCTCTG---TGAATACACAGAGAT
i colAng1.NW_012123820v1          C 0 C 0
s canFam3.chr31                    28765508 178 -  39895921 actcaggcgTTGGAAG-TGAAATTGGTTTCTGAGGAAAAA-AAAGATCTCAGTAGAAACACCCATGAAGTATCATCCCTTAATGGCAAGAACTTCCTGAACATCAGAACACCTAAAGTAGGTAGACGAACTCTAGAGAAGTGCTGGATGTACCAACTGTTATGGTATGAGGA-ACAAAGAT
i canFam3.chr31                   I 428 C 0
s dasNov3.JH568778                  6662629 164 +   6883506 ATATCGGTGGGATAAGCTGAAATGAGTTTTTGAGAAA-----AACATCTCAAAATAAATGC-CATGAAGCAACTTCCCTTC------TGAACTGCCAGGACATCAAATCACCAAGATCAGCTTGGGAA--CCTATAGAAGTCCTGGATGTGCCAACTGATGTT---CAAAACAAGGGAAAC
i dasNov3.JH568778                C 0 C 0
e nasLar1.chr2                       129408 355 + 181502896 I

a score=9555.000000
s hg38.chr14_GL000009v2_random       153234 1 +    201709 A
s panTro5.chr9                     41843190 1 + 116767853 A
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77804675 1 + 205426864 A
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             213982 1 +    245036 A
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    125732 1 -    139590 A
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204247168 1 - 204787373 A
i rheMac8.chr2                    C 0 C 0
s macFas5.chr2                       146382 1 - 192460366 A
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             165894 1 -  11645122 A
i macNem1.NW_012010856v1          C 0 C 0
s cerAty1.NW_012001605v1             151200 1 -   6739814 A
i cerAty1.NW_012001605v1          C 0 C 0
s chlSab2.chr22                       40515 1 - 101219884 A
i chlSab2.chr22                   C 0 C 0
s manLeu1.NW_012099043v1             163352 1 -    785044 A
i manLeu1.NW_012099043v1          C 0 C 0
s nasLar1.chr2                       129763 1 + 181502896 A
i nasLar1.chr2                    I 355 I 3121
s colAng1.NW_012123820v1              52049 1 -  10971483 A
i colAng1.NW_012123820v1          C 0 C 0
s canFam3.chr31                    28765686 1 -  39895921 A
i canFam3.chr31                   C 0 C 0
s dasNov3.JH568778                  6662793 1 +   6883506 A
i dasNov3.JH568778                C 0 C 0

a score=34631.000000
s hg38.chr14_GL000009v2_random       153235 6 +    201709 TAATTA
s panTro5.chr9                     41843191 6 + 116767853 TAATTA
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77804676 6 + 205426864 TAATTA
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             213983 6 +    245036 TAATTA
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    125733 6 -    139590 TAATTA
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204247169 6 - 204787373 TAATTA
i rheMac8.chr2                    C 0 C 0
s macFas5.chr2                       146383 6 - 192460366 TAATTA
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             165895 6 -  11645122 TAATTA
i macNem1.NW_012010856v1          C 0 C 0
s cerAty1.NW_012001605v1             151201 6 -   6739814 TAATTA
i cerAty1.NW_012001605v1          C 0 C 0
s chlSab2.chr22                       40516 6 - 101219884 TAATTA
i chlSab2.chr22                   C 0 C 0
s manLeu1.NW_012099043v1             163353 6 -    785044 TAATTA
i manLeu1.NW_012099043v1          C 0 C 0
s colAng1.NW_012123820v1              52050 6 -  10971483 CAATTA
i colAng1.NW_012123820v1          C 0 C 0
s canFam3.chr31                    28765687 5 -  39895921 -GATTC
i canFam3.chr31                   C 0 I 658
s dasNov3.JH568778                  6662794 6 +   6883506 AAAGGA
i dasNov3.JH568778                C 0 C 0
e nasLar1.chr2                       129764 3121 + 181502896 I

a score=52398.000000
s hg38.chr14_GL000009v2_random       153241 13 +    201709 TAACTGTTACCTG-----
s panTro5.chr9                     41843197 13 + 116767853 TAACTGTTACCTG-----
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77804682 13 + 205426864 TAAATGTTACCTG-----
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             213989 13 +    245036 TAACTATTACCTG-----
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    125739 13 -    139590 TAACTGTTACCTG-----
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204247175 12 - 204787373 TAACTG-TACCTG-----
i rheMac8.chr2                    C 0 C 0
s macFas5.chr2                       146389 12 - 192460366 TAACTG-TACCTG-----
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             165901 12 -  11645122 TAACTG-TACCTG-----
i macNem1.NW_012010856v1          C 0 C 0
s cerAty1.NW_012001605v1             151207 12 -   6739814 TAACTG-TACCTG-----
i cerAty1.NW_012001605v1          C 0 C 0
s chlSab2.chr22                       40522 13 - 101219884 TAACTGTTACCTG-----
i chlSab2.chr22                   C 0 C 0
s manLeu1.NW_012099043v1             163359 12 -    785044 TAACTA-CACCTG-----
i manLeu1.NW_012099043v1          C 0 C 0
s colAng1.NW_012123820v1              52056 13 -  10971483 TAACTGTTACCTG-----
i colAng1.NW_012123820v1          C 0 C 0
s canFam3.chr31                    28766350 13 -  39895921 TGACTACTACCTT-----
i canFam3.chr31                   I 658 C 0
s dasNov3.JH568778                  6662800 13 +   6883506 ----TA-TACTCAGCCCA
i dasNov3.JH568778                C 0 I 276
e nasLar1.chr2                       129764 3121 + 181502896 I

a score=935084.000000
s hg38.chr14_GL000009v2_random       153254 159 +    201709 CA-----TGTAGAGTAAAGATGAG-AAGGCATTGGTCAT--------GGTGGCAGCTACCTCAGGAGTTACAAAGCAGACGTGGTTCCAGGACAGTGTATGTCAGGGCAAAGCTGTCCTAGGAGGCTATTAGGAGTTGGTTACGGCACAGAC---ATTGTAAGTCAGATGGTCTca
s panTro5.chr9                     41843210 159 + 116767853 CA-----TGTAGAGTAAAGATGAG-AAGGCATTGGTCAT--------GGTGGCAGCTACCTCAGGAGTTACAAAGCAGACGCGGTTCCAGGACAGTGTATGTCAGGGCAAAGCTGTCCTAGGAGGCTATTAGGAGCTGGTTACGGCACAGAC---ATTGTAAGTCAGATGGTCTca
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77804695 158 + 205426864 CA-----TGTAGAGTAAAGATGAG-AAGGCATTGGTCAT--------GGTGGCAGCTA-CTCAGGAGTTACAAAGCAGACGTGGTTTCAGGACAGTATATGTCAGGGTAGAGCTGTCCTTGGAGGCTATTAGGAGCTGGTCATGGCACAGAC---ATTGTAAGTCAGATGGTCTca
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             214002 159 +    245036 CA-----TGTGGAGTAAAGATGAG-AAGGCATTGGTCAT--------GGTGGCAGCTACCTCAGGAGTTACAAAGCAGACGTGGTTCCAGGACAGTATATGTCAGGGTAGAGCTGTCCTCGGAGGCTATTAGGAGCTGGTCATGGCACAGAC---ATTGTAAGTCAGATGGTCTca
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    125752 159 -    139590 CA-----CGTAGAGTAAAGATGAG-AAGGCATTGGTCAT--------GGTGGCAGCTTCCTCAGGAGTTACAAAGCAGACGTGGTTCCAGGACAGTATATGTCAGGGCAAAGCTGTCCTCAGAGGCTATTAGGAGCTAGTCATGGCACAGAC---ATTGTAAGACAGATGTTCTca
i nomLeu3.chr21_GL397661_2_random C 0 C 0
s rheMac8.chr2                    204247187 157 - 204787373 CA-----TGTAAAG--ATGAGAAG-AAGGCATTGGTCAT--------AGTGGCAACTACCTCAGGAGTTACAAAGCAGACGTGGTTCCAGGACAGTATATGTCAGGGCAGAGGTGCCCTTGGAGGCTATTAGGAGCTGGTCATGGCACAGGC---ATTGTAAGTCAGATGGTCTca
i rheMac8.chr2                    C 0 C 0
s macFas5.chr2                       146401 157 - 192460366 CA-----TGTAAAG--ATGAGAAG-AAGGCATTGGTCAT--------AGTGGCAACTACCTCAGGAGTTACAAAACAGACGTGGTTCCAGGACAGTATATGTCAGGGCAGAGGTGCCCTTGGAGGCTATTAGGAGCTGGTCATGGCACAGGC---ATTGTAAGTCAGATGGTCTca
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             165913 157 -  11645122 CA-----TGTAAAG--ATGAGAAG-AAGGCATTGGTCAT--------AGTGGCAACTACCTCAGGAGTTACAAAGCAGACGTGGTTCCAGGACAGTATATGTCAGGGCAGAGGTGCCCTTGGAGGCTATTAGGAGCTGGTCATGGCACAGGC---ATTGTAAGTCAGATGGTCTca
i macNem1.NW_012010856v1          C 0 C 0
s cerAty1.NW_012001605v1             151219 157 -   6739814 CA-----TGTAAAG--ATGAGAAG-AAGGCATTGGTCAT--------AGTGGCAACTACCTCAGGAGTTACAAAGCAGATGTGGTTCCAGGACAGTATATGTCAGGGCAGAGGTGTCCTTGGAGGCTATTAGGAGCTGGTCATGGCACAGGC---ATTGTAAGTCAGATGGTCTca
i cerAty1.NW_012001605v1          C 0 C 0
s chlSab2.chr22                       40535 157 - 101219884 CA-----TGTAAAG--ATGAGAAG-GCGGCATTGGTCAT--------AGTGGCAACTACCTCAGGAGTTACAAAGCAGACGTGGTTCCAGGACAGTATATGTCAGCGCAGACGTGTCCTTGGAGGCTATTAGGAGCTGGTCATGGCACAGGC---ATTGTAAGTCAGATGGTCTTa
i chlSab2.chr22                   C 0 C 0
s manLeu1.NW_012099043v1             163371 157 -    785044 CA-----TGTAAAG--ATGAGAAG-AAGGCATTGGTCAT--------AGTGGCAACCACCTCAGGAGTTACAAAGCAGATGTGGTTCCAGGACAGTATATGTCAGGGCAGAGGTGTCCTTGGAGGCTATTAGGAGCTGGTCATGGCACAGGC---ATTGTAAGTCAGATGGTCTca
i manLeu1.NW_012099043v1          C 0 C 0
s colAng1.NW_012123820v1              52069 157 -  10971483 CA-----TGTAAAG--ATGAGAAG-AAGGCATTGGTCAT--------AGTGGCAACTACCTCAGGAGTTACAAAGCAGACATGGTTCCAGGACAGTATATGTCAGGGCAGAGGTGTCCTTGGAGGCTATTAGGAGCTGGTCATGGCACAGGC---ATTGCAAGTCAGATGGTCTCA
i colAng1.NW_012123820v1          C 0 C 0
s canFam3.chr31                    28766363 170 -  39895921 TACATATTGTAAAT--GCGAGAAGCAAGGCATTGGTCATTGGTCATCGGTGTCAGCTACGTTAGAAGTTACAGAGCAGTCATGCTGTGTGGACACTATATGTCAGGGCAAGGTTGTGCTATGATATCATTAGAACCTGGTCAT----CTGGCTTGATTGTAAGTCAGATGGTCTCA
i canFam3.chr31                   C 0 I 5308
e nasLar1.chr2                       129764 3121 + 181502896 I
e dasNov3.JH568778                  6662813 276 +   6883506 I

a score=155828.000000
s hg38.chr14_GL000009v2_random       153413 28 +    201709 ttactttcaatgacaaaaccaaaattac
s panTro5.chr9                     41843369 28 + 116767853 ttactttcagtgacaaaaccaaaattac
i panTro5.chr9                    C 0 C 0
s panPan2.chr3                     77804853 28 + 205426864 ttactttcaatgacaaaaccaaaattac
i panPan2.chr3                    C 0 C 0
s gorGor5.CYUI01000160v1             214161 28 +    245036 ttactttcaatgacaaaaccaaaattac
i gorGor5.CYUI01000160v1          C 0 C 0
s nomLeu3.chr21_GL397661_2_random    125911 28 -    139590 ttactttcaatgacaaaaccaaaattac
i nomLeu3.chr21_GL397661_2_random C 0 N 0
s rheMac8.chr2                    204247344 28 - 204787373 tcactttcattgacaaaaccaaaattac
i rheMac8.chr2                    C 0 C 0
s macFas5.chr2                       146558 28 - 192460366 tcactttcattgacaaaaccaaaattac
i macFas5.chr2                    C 0 C 0
s macNem1.NW_012010856v1             166070 28 -  11645122 tcactttcattgacaaaaccaaaattac
i macNem1.NW_012010856v1          C 0 C 0
s cerAty1.NW_012001605v1             151376 28 -   6739814 tcactttcattgacaaaaccaaaattac
i cerAty1.NW_012001605v1          C 0 C 0
s chlSab2.chr22                       40692 28 - 101219884 ttactttcattgacaaaaccaaaattac
i chlSab2.chr22                   C 0 C 0
s manLeu1.NW_012099043v1             163528 28 -    785044 tcactttcactgacaaaaccaaaattac
i manLeu1.NW_012099043v1          C 0 C 0
s colAng1.NW_012123820v1              52226 28 -  10971483 TTACTTTCATTGACAACATCAAAATTAC
i colAng1.NW_012123820v1          C 0 C 0
e nasLar1.chr2                       129764 3121 + 181502896 I
e canFam3.chr31                    28766533 5308 -  39895921 I
e dasNov3.JH568778                  6662813 276 +   6883506 I

a score=90111.000000
s hg38.chr14_GL000009v2_random    153441 16 +    201709 ttttgcatcagcc-AAT
s panTro5.chr9                  41843397 17 + 116767853 ttttgtatcagcctaaT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77804881 17 + 205426864 ttttgcatcagcctaaT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          214189 17 +    245036 ttttgcatcagcctaaT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42090440 17 -  86207423 TTTTGGTTCTGCCTAGT
i nomLeu3.chr21                N 0 C 0
s rheMac8.chr2                 204247372 17 - 204787373 ttttgcatcagcctaaT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    146586 17 - 192460366 ttttgcatcagcctaaT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          166098 17 -  11645122 ttttgcatcagcctaaT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          151404 17 -   6739814 ttttgcatcagcctaaT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    40720 17 - 101219884 ttttgcatcagcctaaT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          163556 17 -    785044 ttttgcatcagcctaaT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           52254 17 -  10971483 TTTTGCATCAGCCTAAT
i colAng1.NW_012123820v1       C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e canFam3.chr31                 28766533 5308 -  39895921 I
e dasNov3.JH568778               6662813 276 +   6883506 I

a score=756387.000000
s hg38.chr14_GL000009v2_random    153457 123 +    201709 ACAACGGCCTGGCAAGAGC-ACAGAAAAAGGCCCTGTGCTGT-TAGGTGGGGACCTCTGATGCAGCACAA-TTCCTTCATCCCCTTCTCCGAAAC---------CCC-CTCTTCC-ATTCCACTGAAGAG-AGAATCT
s panTro5.chr9                  41843414 126 + 116767853 ACAACGGCCTGGCAAGAGC-ACAGAAAAAGTCCCTGTGCTTT-TAGGTGGGGACCTCTGATGCAGCACAA-TTCCTTCATCCCCTTCTCCAAAAC---------CCCACTCTTCCAATTCCACTGAAGAGAAAAATCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77804898 124 + 205426864 ACAACGGCCTGGCAAGAGC-ACAGAAAAAGTCCCTGTGCTGT-TATGTGGGGACTTCTGATGCAGCACAA-TTCCTTCATCCCCTTCTCCAAAAC---------CCC-CTCTTCCAATTCCACTGAAGAG-AAAATCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          214206 124 +    245036 ACAACGGCCTGGCAAGAGC-ACAGAAAAAGTCCCTGTGCTGT-TATATGGGGACTTCTGATGCAGCACAA-TTCCTTCATCCCCTTCTCCAAAAC---------CCC-CTCTTCCAATTCCACTGAAGAG-AAAATCT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42090457 125 -  86207423 ACAACGGCCTGGGATGGGTGGTGGAATTCGTCCCTGTGGTGT-TAGATGGAGACCTCTGATGCAGCACAA-TTCCTTCATCCCCTTCTCCAAAGC---------CCC-CTCTTCCAATTCCACTGAAGAG-AAAATCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204247389 124 - 204787373 ACAATGGCCTGGCAAGAGC-ACAGAAAAAGTCCCTGTGCTGT-TAGGTGGGGGCCTCTGATGCAGCACAA-CTCCTTCATCCCCTTCTCCAAAAC---------CCC-CTCTTCCAATTCCACTGAAGAG-AAAATCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    146603 124 - 192460366 ACAATGGCCTGGCAAGAGC-ACAGAAAAAGTCCCTGTGCTGT-TAGGTGGGGGCCTCTGATGCAGCACAA-CTCCTTCATCCCCTTCTCCAAAAC---------CCC-CTCTTCCAATTCCACTGAAGAG-AAAATCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          166115 124 -  11645122 ACAATGGCCTGGCAAGAGC-ACAGAAAAAGTCCCTGTGCTGT-TAGGTGGGGGCCTCTGATGCAGCACAA-CTCCTTCATCCCCTTCTCCAAAAC---------CCC-CTCTTCCAATTCCACTGAAGAG-AAAATCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          151421 124 -   6739814 ACAATGGCCTGGCAAGAGC-ACAGAAAAAGTCCCTGTGCTGT-TAGGTGGGGGCCTCTGATGCAGCACAA-TTCCTTCATCCCCTTCTCCAAAAC---------CCC-CTCTTCCAATTCCACTGAAGAG-AAAATCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    40737 124 - 101219884 ACAATGGCCTGGCAAGAGC-ACAGAAAAAGTCCCTGTGCTGT-TAGGTGGGGGCCTCTGATGCAGCACAA-TTCCTTCATCCCCGTCTCCAAAAC---------CCC-CTCTTCCAATTCCACTGAAGAG-AAAATCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          163573 124 -    785044 ACAATGGCCTGGCAAGAGC-ACAGAAAAAGTCCCTGTGCTGT-TAGGTGGGGGCCTCTGATGCAGCACAA-TTCCTTCATCCCCTTCTCCAAAAC---------CCC-CTCTTCCAATTCCACTGAAGAG-AAAATCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           52271 124 -  10971483 ACAATGGCCTGGCAAGAGC-ACAGAAAAAGTCCCTGTGCTGT-TAGGTGGGGGCCTCTGAAGCAGCACAA-TTCCTTCATTCCCTTCTCCAAAAC---------CCC-CTCTTCCAATTCCACTGAAGAG-AAAATCT
i colAng1.NW_012123820v1       C 0 C 0
s canFam3.chr31                 28771841 135 -  39895921 ACAACAGCCTGGCAGGAGT-GAAAGAAAAACTTATGTGTTGTATAGATGTGGCCTTCTAATGTGGCATAATTTTTTTCATCCTTTCTTCTAAAACATGTTGAGACCC-CCTTTCTAGCTCCATCAAAGCC-AAAATCT
i canFam3.chr31                I 5308 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e dasNov3.JH568778               6662813 276 +   6883506 I

a score=206810.000000
s hg38.chr14_GL000009v2_random    153580 47 +    201709 GATGGAAGTGCTGTGTAAGCAGGCTCAGA----------------------------------TA---------------------TATCTACCA-CTATAGA-
s panTro5.chr9                  41843540 47 + 116767853 GATGGAAGTGCTGTGTAAGTAGGCTCAGA----------------------------------TA---------------------TATCTACCA-CTATAGA-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77805022 47 + 205426864 GATGGAAGTCCTGTGTAAGCAGGCTCAGA----------------------------------TA---------------------TATCTACCA-CTATAGA-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          214330 47 +    245036 GATGGAAGTCCTGTGTAAGCAGGCTCAGA----------------------------------TA---------------------GATCTACCA-CTATAGA-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42090582 47 -  86207423 GATGGAAGTCCGGTGTAAGCAGGCTCAGA----------------------------------TA---------------------TACCTACCA-CTATAGA-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204247513 46 - 204787373 GATGGACGTCC--TGTAAGCAGGCTCAGA----------------------------------TA---------------------TATCTGCTATTTAAAGA-
i rheMac8.chr2                 C 0 I 5
s macFas5.chr2                    146727 46 - 192460366 GATGGACGTCC--TGTAAGCAGGCTCAGA----------------------------------TA---------------------TATCTGCTATTTAAAGA-
i macFas5.chr2                 C 0 I 5
s macNem1.NW_012010856v1          166239 46 -  11645122 GATGGACGTCC--TGTAAGCAGGCTCAGA----------------------------------TA---------------------TATCTGCTATTTAAAGA-
i macNem1.NW_012010856v1       C 0 I 5
s cerAty1.NW_012001605v1          151545 46 -   6739814 GATGGACGTCC--TGTAAGCAGGCTCAGA----------------------------------TA---------------------TATCTGCTATTTAAAGA-
i cerAty1.NW_012001605v1       C 0 I 5
s chlSab2.chr22                    40861 46 - 101219884 GATGGACGTCC--TGTAAGCAGGCTCAGA----------------------------------TA---------------------TATCTGCTATTTAAAAA-
i chlSab2.chr22                C 0 I 5
s manLeu1.NW_012099043v1          163697 46 -    785044 GATGGATGTCC--TGTAAGCAGGCTCAGA----------------------------------TA---------------------TATCTGCTATTTAAAGA-
i manLeu1.NW_012099043v1       C 0 I 5
s colAng1.NW_012123820v1           52395 46 -  10971483 GATGGACGTCC--TGTAAGCAGGCTCAGA----------------------------------TA---------------------TATCTGCTATTTAAAGA-
i colAng1.NW_012123820v1       C 0 I 5
s canFam3.chr31                 28771976 80 -  39895921 AGTGGAAATCC--TGAAGGCAGGCTCAAAAGGAGTGAGGGGAAAAGAGAGACAAGGATTACTGTG---------------------TATCATCCAGTTAACAA-
i canFam3.chr31                C 0 I 135
s dasNov3.JH568778               6663089 65 +   6883506 AATGGAAG-----CTTGAGTTGACTCACA----------------------------------TAGTAGAGATAAAACCTGGGTGGTACCTGTTATTGAATGGC
i dasNov3.JH568778             I 276 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I

a score=339021.000000
s hg38.chr14_GL000009v2_random    153627 53 +    201709 TAGTAG---AGGTGATTCATAAATCCAAGCCTATCAAA----TACATCATAAATAAGTTA
s panTro5.chr9                  41843587 53 + 116767853 TAGTAG---AGGTGATTCATAAATCCAAGCCTATCAAA----TACCTCATAAATAAGTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77805069 53 + 205426864 TAGTAG---GGGTGATTCACAAATCCAAGCCTATCAAA----TACATCATAAATAAGTTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          214377 53 +    245036 TAGTAG---AAATGATTCACAAATCCAAGCCTATCAAA----TACATCATAAATAAGTTA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42090629 53 -  86207423 TAGTAG---AGGTGACTCACAAATCCAAGCCTATCAAA----TACATCACTAACAAATTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204247564 53 - 204787373 TGGTAG---AGGTGATTCACAAATCCAAGCCTACCAAA----TACACCATAAATAGGTTA
i rheMac8.chr2                 I 5 C 0
s macFas5.chr2                    146778 53 - 192460366 TGGTAG---AGGTGATTCACAAATCCAAGGCTACCAAA----TACACCATAAATAGGTTA
i macFas5.chr2                 I 5 C 0
s macNem1.NW_012010856v1          166290 53 -  11645122 TGGTAG---AGGTGATTCACAAATCCAAGCCTACCAAA----TACACCATAAATAGGTTA
i macNem1.NW_012010856v1       I 5 C 0
s cerAty1.NW_012001605v1          151596 53 -   6739814 TGGTAG---AGGGGATTCACAAATCCAAGCCTACCAAA----TACACCATAAATAGGTTA
i cerAty1.NW_012001605v1       I 5 C 0
s chlSab2.chr22                    40912 53 - 101219884 TGGTAG---AGGTGATTCACAAATCTAAGCCTACCAAA----TACATCATAAATAGGTTA
i chlSab2.chr22                I 5 C 0
s manLeu1.NW_012099043v1          163748 53 -    785044 TGGTAG---AGGGGATTCACAAATCCAAGCCTACCAAA----TACACCATAAATAGGTTA
i manLeu1.NW_012099043v1       I 5 C 0
s colAng1.NW_012123820v1           52446 53 -  10971483 TGGTAG---AGGTGATTCACAAATCCAAGCCTACCAAA----TACATCATAAATAAGTTA
i colAng1.NW_012123820v1       I 5 C 0
s canFam3.chr31                 28772191 57 -  39895921 TAGTAG---AAGTGGTTTGCAGATCCATGCCTACCAAACATGCATATCCTAAATGAGTTA
i canFam3.chr31                I 135 I 89
s dasNov3.JH568778               6663154 56 +   6883506 TAGTAGAATAGGCGGTTCTCAATATCATGGCTGCCAAA----CATACACTAAATGAATTA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I

a score=9194.000000
s hg38.chr14_GL000009v2_random    153680 3 +    201709 CAC
s panTro5.chr9                  41843640 3 + 116767853 CAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77805122 3 + 205426864 CAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          214430 3 +    245036 CAC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42090682 3 -  86207423 CAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204247617 3 - 204787373 CAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    146831 3 - 192460366 CAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          166343 3 -  11645122 CAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          151649 3 -   6739814 CAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    40965 3 - 101219884 CAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          163801 3 -    785044 CAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           52499 3 -  10971483 CAT
i colAng1.NW_012123820v1       C 0 C 0
s dasNov3.JH568778               6663210 2 +   6883506 GA-
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e canFam3.chr31                 28772248 89 -  39895921 I

a score=56100.000000
s hg38.chr14_GL000009v2_random    153683 22 +    201709 GTTTAA-----TTTTTTTTTTGAAATT
s panTro5.chr9                  41843643 20 + 116767853 GTTTAA-------TTTTTTTTGAAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77805125 20 + 205426864 ATTTAA-------TTTTTTTTGAAATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          214433 21 +    245036 ATTTAA------TTTTTTTTTGAAATT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42090685 21 -  86207423 GTTTAA------TTTTTTTTTGAAATT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204247620 24 - 204787373 GTTATTA---TTATTTTTTTTGAAATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    146834 24 - 192460366 GTTATTA---TTATTTTTTTTGAAATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          166346 24 -  11645122 GTTATTA---TTTTTTTTTTTGAAATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          151652 23 -   6739814 GTTATT----TTTTTTTTTTTGAAATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    40968 24 - 101219884 GTTATTT---ATTTATTTTTTTTAATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          163804 21 -    785044 GTTAT------TTTTTTTTTTGAAATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           52502 24 -  10971483 Gtttttt---tttttttttttGAAATT
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20731690 22 +  38779656 GCTTTA-----GTTTTTTATAAAAATT
i otoGar3.GL873528             N 0 C 0
s dasNov3.JH568778               6663212 21 +   6883506 ------GCCACTCTTttttttaaaaat
i dasNov3.JH568778             C 0 I 412
e nasLar1.chr2                    129764 3121 + 181502896 I
e canFam3.chr31                 28772248 89 -  39895921 I

a score=1896175.000000
s hg38.chr14_GL000009v2_random    153705 326 +    201709 AGGGATCATGAtataaaagttatcagaatcaaaac--tgtcggtaatctttaaaaagaaaagaaaaaacctgaacaaatagattcagagaaggccttgaagagagggttctc-atgcttctaggcctgat---acaaactgtcacaaaataccgca-aaatccacaaccttgcacaaaggccatagcaaccttacac---------aaaatacacttctgtgaggacatctatccagcaaccacttgctcaaacttcaactgacatcgaccttgttgttgatctttatagtcaaagataactataacaaaacaattatataagcctgttcatttttccttta
s panTro5.chr9                  41843663 326 + 116767853 AGGGATCATGAtataaaagttatcagaatcaaaac--tgtcactaatctttaaaaagaaaagaaaaaacctggacaaatagattcagagaaggccttgaagagagggttctc-atgcttctaggcctgat---aaaaactatcacaaaataccact-aaaaccacaaccttgcacaaaggccatagcaaccttacac---------aaaatacacttctgtgaggacatctatccagcaaccacctgcccaaacttcaattgacatcgaccttgttgttgatctttatagtcaaagataactataatgaaacaattatataagcctcttcatttttccttta
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77805145 328 + 205426864 AGGGATCATGAtatgaaagttatcagaatcaaaac--tgtcactaatgtttaaaaagaaaagaaaaaacctgcacaaatagattcagagaaggcctt-aagagagggttctc-atgcttctaggcctgataacaaaaactatcacaaaataccaca-aaaacgacaaccttgcacacaggccatagcaaccttacac---------aaaatatacttctgtgaggacatctatccagcaactgcctgcccaaccttcaactgacattgaccttgttgtttatctttatagtcaaagacaactgtatcaaaataattatataagcctcttcatttttccttta
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          214454 328 +    245036 AGGGATCATGAtatgaaagttatcagaatcaaaac--tgtcactaatgtttaaaaaggaaagaaaaaacttgtagaaatagattcagagaaggccttgaagagagggttctc-atgcttctaggcctgataacaaaaactatcacaaaataccaca-aaaacgac-accttgcacacaggccatagcaaccttacac---------aaaatatacttctgtgaggacatctatccagcaaccgcctgcccaaacttcaactgacatcgaccttgttgttgatctttaaagtcaaagataactatatcaaaacacttatataagcctctttatttttccttta
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42090706 329 -  86207423 AGGGATCATGAtatgaaagttatcagaatcaaaac--tgtcactaatgtttaaaaggaaaagaaaaaacctggacaaatagattcagagaagaccttgaagagagggttctc-atgcttgtaggcctgataacaaaaactatcacaaaataccaca-aaaaccacaaccttgcacaaaggccatagcaaccttacac---------aaaatacacttctgtgaggacatctatccagcaaccacctgcccaaccttcaactgacatcgaccttgttgttgatctgtatagttgaagataactatatcgaaacaattacataagcctcttcatttttcctttg
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204247644 323 - 204787373 AGGGGTCATGAtgtgaaagttatcagaatcaaaac--tgtcattaatgtttaaaaagaaaagaaaaaacccagacaaaaaaattcagagaaggccttgaagagagggttctt-acgcttcttggcctgataacaaaa------acaaaataccacg-aaaactacaatcttgcacaaaggccgtagcaaccttacac---------aaaaaatacttctgtggggacatctatccagcaaccacctgcccaacctacaactgacatcgaccttgttgtcgatctttatagtcaaagataactgtgtcaaaacaattatacaagcctcttcatttttccttta
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    146858 323 - 192460366 AGGGGTCATGAtgtgaaagttatcagaatcaaaac--tgtcattaatgtttaaaaagaaaagaaaaaacccagacaaaaaaattcagagaaggccttgaagagagggttctt-acgcttcttggcctgataacaaaa------acaaaataccacg-aaaactacaatcttgcacaaaggccgtagcaaccttacac---------aaaaaatacttctgtggggacatctatccagcaaccacctgcccaacctacaactgacatcgaccttgttgtcgatctttatagtcaaagataactgtgtcaaaacaattatacaagcctcttcatttttccttta
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          166370 324 -  11645122 AGGGGTCATGAtgtgaaagttatcagaatcaaaac--tgtcattaatgtttaaaaagaaaagaaaaaacccagacaaaaaaattcagagaaggccttgaagagagggttcttaacgcttctaggcctgataacaaaa------acaaaataccacg-aaaactataatcttgcacaaaggccgtagcaaccttacac---------aaaaaatacttctgtggggacatctatccagcaaccacctgcccaacctacaactgacatcgaccttgttgtcgatctttatagtcaaagataactgtgtcaaaacaattatacaagcctcttcatttttccttta
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          151675 323 -   6739814 AGGGATCATGAtgtgaaagttatcagaatcaaagc--tgtcattaatgtttaaaaagaaaagaaaaaacccagacaaataaattcagagaagaccttgaagagagggttctt-acgcttctaggcctgataacaaaa------acaaaataccaca-aaaactacaaccttgcacaaaggccgtagcaaccttacac---------aaaaaatacttctgtggggacatctatccagcaaccacctgcccaacctacaactgacatcgaccttgttgtcgatctttatagtcaaagataactgtgtcaaaacaattatataagcctcttcatttttccttta
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    40992 323 - 101219884 AGGGATCATGAtgtgaaagttatcagaatcaaaac--tgtcattaatgtttaaaaagaaaagaaaaaacccagacaaataaattcagagaaggccttgaagagagggttctc-acgcttctgggcctgataacaaaa------acaaaataccaca-aaaactacaaccttgcacaaaggccatagcaaccttacac---------aaaaaacacttctgtggggacatctatccagcaaccacctgcccaaccttcaactgacatcgactttgttgttgatctttatagtcaaagataactgtgtcaaaacaattacataagcctcttcatttttccttta
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          163825 323 -    785044 AGGGATCATGAtgtgaaagttatcagaatcaaagc--tgtcattaatgtttaaaaagaaaagaaaaaacccagacaaataaattcagagaaggccttgaagagagggttctt-acgcttctaggcctgataacaaaa------acaaaataccaca-aaaactacaaccttgcacaaaggccgtagcaaccttacac---------aaaaaatacttctgtggggacatctatccagcaaccacctgcccaacctacaactgacatcgaccttgttgtcgatctttatagtcaaagataactgtgtcaaaacaattatataagcctcttcatttttccttta
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           52526 323 -  10971483 AGGGATCATGAtgtgaaagttatcagaatcaaaac--tgtcattaatctttaaaaagaaaagaaaaaatccagacaaataaattcagagaaggccttgaagagagggttctc-acccttctaggcctgataacaaaa------acaaaataccaca-aaaaccacaaccttgcacaaaggccgtagcaaccttacac---------aaaaaacacttctgtcgggacatttatccagcaaccaactgcccaaacttcaactgacatcgaccttgttgttgatctttatagtcaaagataactgtgtcaaaacaattatataagcctcttcatttttccttta
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20731712 327 +  38779656 GAAGATCATGATACAaaatttgtgagaataaaaatagagtcactaatgctgaaaaaaaag----------ctaacaaatacagctggggaaggttgtgaacagagagttctc-atgcttgtgtacctgat---aaaaaatatcacgaaaggctttacaaaatcataaccttgcata-aggccataggcaccttccacaaaaaaaaaaaaaaaaaattctgtgagggcatattcctggcaactgcctgtctaaccttggactggtgtcacccttgttgttgatctttgtagccaaggatatttctaacaaaacaattatgtaatcttcctcattttgttctca
i otoGar3.GL873528             C 0 I 310
e nasLar1.chr2                    129764 3121 + 181502896 I
e canFam3.chr31                 28772248  89 -  39895921 I
e dasNov3.JH568778               6663233 412 +   6883506 I

a score=264757.000000
s hg38.chr14_GL000009v2_random    154031 55 +    201709 tttatttttttctactcccccataattccaggttgatcgcttttcttttaaagac
s panTro5.chr9                  41843989 54 + 116767853 ttta-ttttttctactccctcatacttccaagttgatcgtttttcttttaaagaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77805473 55 + 205426864 tttatttttttctactcccccatacttccaggttgatcgtttttcttttaaagac
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          214782 55 +    245036 tttattttcttctactcccccatacttccaggttgatcgtttttcttttaaagac
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42091035 47 -  86207423 t--------ttctactcccccatgcttccaggttgatcgtttttcttttaaagac
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204247967 52 - 204787373 tt---tttttcctactcccccatacttccaggttgatcatttttcttttaaaaac
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    147181 52 - 192460366 tt---tttttcctactcccccatacttccaggttgatcatttttcttttaaaaac
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          166694 52 -  11645122 tt---tttttcctactcccccatacttccaggttgatcatttttcttttaaaaac
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          151998 52 -   6739814 tt---tttttcctactcccccatacttccagattgatcatttttcttttaaaaac
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    41315 52 - 101219884 tt---tttttcctactgccccatacttccaggttgatcatttttcttttaaaaac
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          164148 52 -    785044 tt---tttttcctactcccccatacttccagattgatcatttttcttttaaaaac
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           52849 52 -  10971483 tt---tttttcctactcccccatacttccaggttgatcatttttcttttaaaaac
i colAng1.NW_012123820v1       C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e canFam3.chr31                 28772248 89 -  39895921 I
e otoGar3.GL873528              20732039 310 +  38779656 I
e dasNov3.JH568778               6663233 412 +   6883506 I

a score=565961.000000
s hg38.chr14_GL000009v2_random    154086 102 +    201709 cttgtcttcctttacc-atttgaat--ctacacagtttgctttgtcatgcatattcccattgcagtgccct-cctccctaagatgtgtctttttcctttagagaac
s panTro5.chr9                  41844043 102 + 116767853 tttgtcttcctttacc-atttgaat--ctacatagtttgctttgtcatgcatattcccactgcagtgccct-cctccctaagatgtgtctttttcctttagagagc
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77805528 102 + 205426864 cttgtcttcctttacc-atttgaat--ctacatagtttactttgtcatgcatattcccattgaaatgccct-cctccctaagatgtgtctttttcctttaaagagc
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          214837 102 +    245036 cttgtcttcctttacc-atttgaat--ctacatagtttactttctcatgcatattcccattgaaatgccct-cctccctaagatgtgtctttttcctttagagagc
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42091082 102 -  86207423 cttgtcttccttcacc-atttgaat--ctacatagtttcttttgtcaggcatgttcccattgcaatgtcct-cctccctaaggtgtgtctttttccatcagagagc
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204248019 102 - 204787373 cttgtc-tcctttacctatttgaat--ctacatagtttactctgtcatgcatattcccattgcaatgccct-cctccctaagatatgtctttttcctttaaagagc
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    147233 102 - 192460366 cttgtc-tcctttacctatttgaat--ctacatagtttactctgtcatgcatattcccattgcaatgccct-cctccctaagatatgtctttttcctttaaagagc
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          166746 102 -  11645122 cttgtc-tcctttacctatttgaat--ctacatagtttactctgtcatgcatattcccattgcaatgccct-cctccctaagatatgtctttttcctttaaagagc
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          152050 103 -   6739814 cttgtcttcctttacctatttgaat--ctacatagtttactttgtcatgcatattcccattgcaatgccct-cctcactaagatatgtctttttcctttaaagagc
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    41367 103 - 101219884 cttgtcttcctttacctatttgaat--ctacatagtttactttgtcatgcgtattcccattgcaatgccct-cctccctaagatatgtctttttcgtttaaagagc
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          164200 103 -    785044 cttgtcttcctttacctatttgaat--ctacatagtttactttgtcatgcatattcccattgcaatgctct-cctcactaagatatgtctttttcctttaaagagc
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           52901  90 -  10971483 cttgtcttcctttacctatttgaat--ctacatagtttactttgtcatgcatattcccattgcaatgccct-cc-------------tctttttcctttaaagagc
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20732349 103 +  38779656 tttgccttcctttgcctttctgaatacacacatagcttactgcagcacatgtggtcccattacaataccttacccccccaataaatatcacctt---ttaggaagc
i otoGar3.GL873528             I 310 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e canFam3.chr31                 28772248  89 -  39895921 I
e dasNov3.JH568778               6663233 412 +   6883506 I

a score=9100.000000
s hg38.chr14_GL000009v2_random    154188 1 +    201709 c
s panTro5.chr9                  41844145 1 + 116767853 c
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77805630 1 + 205426864 c
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          214939 1 +    245036 c
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42091184 1 -  86207423 c
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204248121 1 - 204787373 c
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    147335 1 - 192460366 c
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          166848 1 -  11645122 c
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          152153 1 -   6739814 c
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    41470 1 - 101219884 c
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          164303 1 -    785044 c
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           52991 1 -  10971483 c
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20732452 1 +  38779656 c
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6663645 1 +   6883506 C
i dasNov3.JH568778             I 412 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e canFam3.chr31                 28772248 89 -  39895921 I

a score=341144.000000
s hg38.chr14_GL000009v2_random    154189 58 +    201709 --tttctctgtttgttattt---------------aggtttaca----ATGAGAAAGCGTGT--AAAGT-----------AATTTTACTGTC
s panTro5.chr9                  41844146 58 + 116767853 --tttctctgtttgttattt---------------aggtttaca----ATGAGAATGCGTGT--AAAGT-----------ATTTTTACTGTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77805631 69 + 205426864 --tttctctgtttgttattt---------------aggtttaca----ATGAGAAGGGGTCT--AAAGTATTTTTGTAAAATTTTTACTGTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          214940 65 +    245036 --tttctc----tgttattt---------------aggtttaca----ATGAGAAGGGGTCT--AAAGTATTTTTGTAAAATTTTTACTGTC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42091185 65 -  86207423 --tttctc----tgttttct---------------aggtttaca----ATGAGAAGGGCTCT--AAAGCATTTTTGTAAAATTTTTACTGTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204248122 69 - 204787373 --tttctatgcttgttattt---------------aggtttaca----ACGAGAAGGGGTCT--AAAGTATTTTTGTAAAATTGTTACTGTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    147336 69 - 192460366 --tttctatgcttgttattt---------------aggtttaca----ACGAGAAGGGGTCT--AAAGTATTTTTGTAAAATTGTTACTGTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          166849 69 -  11645122 --tttctatgcttgttattt---------------aggtttaca----ACGAGAAGGGGTCT--AAAGTATTTTTGTAAAATTGTTACTGTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          152154 69 -   6739814 --tttctatgtttgttattt---------------aggtttaca----ATGAGAAGGAGTCT--AAAGTATTTTTGTAAAATTGTTATTGTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    41471 69 - 101219884 --tttctatgtttgttattt---------------aggtttaca----ACGAGAAGGGGTCT--AAAGTATTTTTGCAAAATTGTTACTGTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          164304 69 -    785044 --tttctatgtttgttattt---------------aggtttaca----ATGAGAAGGAGTCT--AAAGTATTTTTGTAAAATTGTTATTGTC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           52992 69 -  10971483 --tttctatgtttgttattt---------------aggtttaca----ATGAGAAGAGGTCT--AAAGTATTTTTGCAAAATGGTTACTGTC
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20732453 63 +  38779656 --tcttcc----tattattt---------------aggttgaca----GAGATAAGAGATCT--GAAATGTTATTTTC--ATTTTCACTCTG
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28772337 59 -  39895921 --ttttttttttttttAAAT---------------AGA--GATT----GTGATAAGAGATCTTCAAAGTC----------AATTTTATTTTC
i canFam3.chr31                I 89 I 6
s dasNov3.JH568778               6663646 88 +   6883506 TATCTCCATCGTTCTTATTTGTTTACTTTCGTCAGAAATTTAGAGAACATGATAAGGAATCT--TAAATGTTATTTTT--ATTTTCTCTGTC
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I

a score=1507937.000000
s hg38.chr14_GL000009v2_random    154247 196 +    201709 TTCCTAGG-AA---AAAATCACTGAC-TTACAATATTTATA-T----TTACTTATTTACATTCCT-----G-GGGATGAG-----GAATTAAAGATTTCACAAATTTTCTTATTGAGAATATCGAAGTTTTCATGTGAGCAAAACTGAATATGTAAATTG-ATATGTAAATTATGCTGCAGATAATATGCTCAAATGTTTACTTGTATT---TAATTTGTT--------
s panTro5.chr9                  41844204 196 + 116767853 TTCCTAGG-AA---AAAATCACTGAC-TTACAGTATTTATA-T----TTATTTATTTACATTCCT-----G-GGGATGAG-----GAATTAAAGATTTCACAAattttcttattgagacgatccaagttttcatgtgagcaaaactgaatatgtaaattg-atatgtaaattatgctgcagataatatggtcaaatgtttacttgtatt---taatttgtt--------
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77805700 196 + 205426864 TTTCTAGG-AA---AAAATCACTGAC-TTACAGTATTTATA-T----TGACTTATTTACATTCCT-----G-GGGATGAG-----GAATTAAAGATTTCACAGattttcttattgagaagatccaagttttcatgtgagcaaaacccaatatgtaaattg-atatgtaaattatgctgcagataatatagtcaaatgtttacttgtatt---taatttgtt--------
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          215005 196 +    245036 TTCCTAGG-AA---AAAATCACTGAC-TTACAGTATTTATA-T----TGACTTATTTACATTCCT-----G-GGGATGAG-----GAATTAAAGATTTCACAAatgttcttattgagaagatccaagttttcatgtgagcaaaactgaatatgtaaattg-atatgtaaattatgctgcagataatatagtcaaatgtttacttgtatt---taatttgtt--------
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42091250 196 -  86207423 TTCCTAGG-AA---AAAATCACTGAC-TTACAGTATTGATA-T----TGACTTATTTACATTTCT-----A-GGGATGAG-----GAATTAAAGATTTCACAAattttcttcttgagaagatccaagttttcacgtgagcaaaactgaatatgtaaattg-atatgtaaattatgctgcagataatatagtcaaatgtttacttgtatt---taatttgtt--------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204248191 196 - 204787373 TTCCCAGG-AA---AAAATCACTGAC-TTTTACTGTTTACA-T----TGACTTATTTACATTCCT-----G-GGGATGAG-----GTATTAAATATTTCACAAATTTTCTTATTGACAAGATCCAAGTTTTCATGTGAGCAAAACTGAATATGCAAATTG-ATATGTAAATTATGCTGCAGATAAAATAGCCAAGTGTTTCCTTGTATT---TAATTTGTT--------
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    147405 197 - 192460366 TTCCCAGGAAA---AAAATCACTGAC-TTTTACTGTTTACA-T----TGACTTATTTACATTCCT-----G-GGGATGAG-----GTATTAAATATTTCACAAattttcttattgacaagatccaagttttcatgtgagcaaaactgaatatgcaaattg-atatgtaaattatgctgcagataaaatagccaagtgtttccttgtatt---taatttgtt--------
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          166918 196 -  11645122 TTCCCAGG-AA---AAAATCACTGAC-TATTACTGTTTACA-T----TGACTTATTTACATTCCT-----G-GGGATGAG-----GTATTAAATATTTCACAAattttcttattgacaagatccaagttttcatgtgagcaaaactgaatatgcaaattg-atatgtaaattatgctgcagataaaatagccaagtgtttccttgtatt---taatttgtt--------
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          152223 197 -   6739814 TTCCTATG-AA---AAAATCACTGAC-TTTTACTATTTACGTT----TGACTTATTTACATTCCT-----G-GGGATGAG-----GTATTAAATATTTCACAAattttcttattgacaagatccaagttttcatgtgagcaaaactgaatatgcaaattg-atatgtaaattatgctgcagataaaatagtcaaatgtttccttgtatt---taatttgtt--------
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    41540 197 - 101219884 TTCCTAGGAAA---AAAATCACTGAC-TTTTACTGTTTACA-T----TGACTTATTTACATTCCT-----G-GGGATGAG-----GTATTAAATATTTCACAAattttcttattgacaagatccaagttttcatgtgagcaaaactgaatatgcacattg-atatgtaaattatgctgcagataaaatagtcaaatgtttccttgtatt---taatttgtt--------
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          164373 197 -    785044 TTCCTATG-AA---AAAATCACTGAC-TTTTACTATTTACGTT----TGACTTATTTACATTCCT-----G-GGGATGAG-----GTATTAAATATTTCACAAattttcttattgacaagatccaagttttcatgtgagcaaaactgaatatgcaaattg-atatgtaaattatgctgcagataaaatagtcaaatgtttccttgtatt---taatttgtt--------
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           53061 196 -  10971483 TTCCTAGG-AA---AAAATCACTGAC-TTTTACTATTTACA-T----TGACTTATTTACATTCCT-----G-GGGATGAA-----GTATTAAATATTTCACAAattttcttacggacaagatccaagttttcatgtgagcaaaactgaatatgcaaattg-atatgtaaattatgctgcagatgaaatagtcaaatgtttccttgtatt---taatttgtt--------
i colAng1.NW_012123820v1       C 0 C 0
s eulFla1.LGHW01000695v1           57947 203 +   1229009 TTCCTAGG-AA---AAAACCACTGAC-TTCTACTATTTATA-TAGACTTATTTATTTACATCCCT-----A-GGGGAAAG-----GAATTAAAGATCTCGGAAatgttctcattgagtagacccagattttcatgtgagcaaaattgaatatgtaaattg-atatgtaaatcatgctgcaaataagatagtcaaatgtttacttgtatttaataattagtt--------
i eulFla1.LGHW01000695v1       N 0 C 0
s otoGar3.GL873528              20732516 207 +  38779656 TTCCTGGG-GAGGGGGAATCACTAAT-TCTTACTATTTATA-TCAAATTATTTATTTATATCTCA-----G-AGGGAAGG-----GAATGAAAGATCTTTGAAATTTTCTCTTTGAGTAGATCCAGATTTTCGTGTGAGCAAAATTAAATATGTaaattgaatatgtaaatcatgttgcaaatgaaatagtcaaatgtttacttatatttaataatcagcc--------
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28772402 196 -  39895921 TTCCTAGG--A---AAAATCATTGAC-TCACAA---CTATA-T----ATATCTGCTTACATCTCTGTGTGG-GGGAGGAGAGAGTGGGTTAGAAATCTC---AGTTTTCTCATTAAGAAAATTCAGGTTTTTATGTGAGCACAATTGAGTATATAAATTGAATAGGTAAGTTAGGCTGTGAATAAAA--ATAAAAtatctacttataat-----atttatt--------
i canFam3.chr31                I 6 I 681
s dasNov3.JH568778               6663734 204 +   6883506 TTACTAG--AA---GAAATCACTAGCAACTCATTATTTGTA-T----CTACATACTTACATCCTT-----ATGGGAAGAG-----ATCATAAAAatctcccagtttttcccattgggaagattcaggttttcatatgagcaaaactgcatatattaattgagggtataaattatgcttcagataaaataaccaaatatctaaccatgat-----atttattatttaggt
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I

a score=3222379.000000
s hg38.chr14_GL000009v2_random    154443 449 +    201709  
s panTro5.chr9                  41844400 449 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77805896 448 + 205426864  
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          215201 448 +    245036  
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42091446 449 -  86207423  
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204248387 451 - 204787373  
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    147602 451 - 192460366  
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          167114 451 -  11645122  
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          152420 450 -   6739814  
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    41737 451 - 101219884  
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          164570 450 -    785044  
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           53257 451 -  10971483  
i colAng1.NW_012123820v1       C 0 C 0
s eulFla1.LGHW01000695v1           58150 454 +   1229009  
i eulFla1.LGHW01000695v1       C 0 I 2501
s otoGar3.GL873528              20732723 461 +  38779656  
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6663938 503 +   6883506  
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e canFam3.chr31                 28772598 681 -  39895921 I

a score=211449.000000
s hg38.chr14_GL000009v2_random    154892 33 +    201709 gttccttcttttctt-----------gtggcttgactctgatgc
s panTro5.chr9                  41844849 33 + 116767853 gttcctccttttctt-----------gtagcttgactctgatga
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77806344 33 + 205426864 gttcctccttttctt-----------gtagcttgactctgatga
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          215649 33 +    245036 gttcctccttttctt-----------gtagcttgactctgatga
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42091895 33 -  86207423 gttcctccttttctt-----------gtagcttgactctgatga
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204248838 33 - 204787373 gtttctgcttttctt-----------attgcttgactctgatga
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    148053 33 - 192460366 gtttctgcttttctt-----------attgcttgactctgatga
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          167565 33 -  11645122 gtttctgcttttctt-----------attgcttgactctgatga
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          152870 33 -   6739814 gtttctccttttctt-----------attgcttgactctgatga
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    42188 33 - 101219884 gtttctccttttctt-----------attgcttgactctgatga
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          165020 33 -    785044 gtttctccttttctt-----------attgcttgactctgatga
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           53708 33 -  10971483 gtttctccttttctt-----------attgcttgactctgatga
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20733184 44 +  38779656 TTTTCTCCCTTTTTTTTTTTTTTTTGGTAGCTTGATTCTGGTAA
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6664441 33 +   6883506 tttcctactaattct-----------gtagcttgcctttgatga
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e canFam3.chr31                 28772598 681 -  39895921 I

a score=209823.000000
s hg38.chr14_GL000009v2_random    154925 25 +    201709 tctctatatgcaacatcaattgatg
s panTro5.chr9                  41844882 25 + 116767853 tctctatatgcaacatcaattgaca
i panTro5.chr9                 C 0 I 5
s panPan2.chr3                  77806377 25 + 205426864 tctctatatgcaacatcaattgaca
i panPan2.chr3                 C 0 I 5
s gorGor5.CYUI01000160v1          215682 25 +    245036 tctctatatgcaacatcaattgaca
i gorGor5.CYUI01000160v1       C 0 I 5
s nomLeu3.chr21                 42091928 25 -  86207423 tctctatatgcaacatcaattgaca
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204248871 25 - 204787373 tctctatacgcaacatcaattgatg
i rheMac8.chr2                 C 0 I 5
s macFas5.chr2                    148086 25 - 192460366 tctctatacgcaacatcaattgatg
i macFas5.chr2                 C 0 I 5
s macNem1.NW_012010856v1          167598 25 -  11645122 tctctatacgcaacatcaattgatg
i macNem1.NW_012010856v1       C 0 I 5
s cerAty1.NW_012001605v1          152903 25 -   6739814 tctctatacgcaacatcaattgatg
i cerAty1.NW_012001605v1       C 0 I 5
s chlSab2.chr22                    42221 25 - 101219884 tctctatacgcaacatcaattgata
i chlSab2.chr22                C 0 I 5
s manLeu1.NW_012099043v1          165053 25 -    785044 tctctatacgcaacatcaattgatg
i manLeu1.NW_012099043v1       C 0 I 5
s colAng1.NW_012123820v1           53741 25 -  10971483 tttctatatgcaatatcaattgatg
i colAng1.NW_012123820v1       C 0 I 5
s saiBol1.JH378168              10914546 25 -  13128814 tctctatatgcagcatcaatggaca
i saiBol1.JH378168             N 0 I 5
s cebCap1.NW_016107322v1         7642952 25 +  14377064 TCTCTATATGCAACATCAATTGACA
i cebCap1.NW_016107322v1       N 0 C 0
s otoGar3.GL873528              20733228 25 +  38779656 TTTCCATAAATATCAGCAACTGATA
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6664474 25 +   6883506 tttctataagaattggcagtgaaca
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e canFam3.chr31                 28772598 681 -  39895921 I

a score=139679.000000
s hg38.chr14_GL000009v2_random    154950 18 +    201709 -----taaagtacattca------------------------------------------------------gggca
s panTro5.chr9                  41844912 18 + 116767853 -----taaagtacattca------------------------------------------------------gggca
i panTro5.chr9                 I 5 C 0
s panPan2.chr3                  77806407 18 + 205426864 -----taaagtacattcg------------------------------------------------------gggca
i panPan2.chr3                 I 5 C 0
s gorGor5.CYUI01000160v1          215712 18 +    245036 -----taaagtacattca------------------------------------------------------gggtc
i gorGor5.CYUI01000160v1       I 5 C 0
s nomLeu3.chr21                 42091953 18 -  86207423 -----taaagtacattca------------------------------------------------------gggca
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204248901 18 - 204787373 -----taaagtatattca------------------------------------------------------gggca
i rheMac8.chr2                 I 5 C 0
s macFas5.chr2                    148116 18 - 192460366 -----taaagtatattca------------------------------------------------------gggca
i macFas5.chr2                 I 5 C 0
s macNem1.NW_012010856v1          167628 18 -  11645122 -----taaagtatattca------------------------------------------------------gggca
i macNem1.NW_012010856v1       I 5 C 0
s cerAty1.NW_012001605v1          152933 18 -   6739814 -----taaagtatattca------------------------------------------------------gggca
i cerAty1.NW_012001605v1       I 5 C 0
s chlSab2.chr22                    42251 18 - 101219884 -----taaagtatattca------------------------------------------------------gggca
i chlSab2.chr22                I 5 C 0
s manLeu1.NW_012099043v1          165083 18 -    785044 -----taaagtatattca------------------------------------------------------gggca
i manLeu1.NW_012099043v1       I 5 C 0
s colAng1.NW_012123820v1           53771 17 -  10971483 -----taaagtatattca------------------------------------------------------gggc-
i colAng1.NW_012123820v1       I 5 C 0
s saiBol1.JH378168              10914576 18 -  13128814 -----taaagttcatttg------------------------------------------------------ggaca
i saiBol1.JH378168             I 5 C 0
s cebCap1.NW_016107322v1         7642977 18 +  14377064 -----TAAAGTACATTCT------------------------------------------------------GGACA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4106982 18 -   9889416 -----taaagtacattcg------------------------------------------------------ggaca
i aotNan1.NW_018487195v1       N 0 C 0
s otoGar3.GL873528              20733253 72 +  38779656 -----TAAAATGTATTCATTTATTTTTATTAAATCATAAACACATAGATCATGTATACATTAATTCatttatgggta
i otoGar3.GL873528             C 0 I 152
s dasNov3.JH568778               6664499 23 +   6883506 tagataaaggtacattta------------------------------------------------------gggta
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e canFam3.chr31                 28772598 681 -  39895921 I

a score=1032983.000000
s hg38.chr14_GL000009v2_random    154968 114 +    201709 -----------atagagtttctttaaatatta-ctttgttattcaaaataatcac-aaagcactcatcgtaggaaa-acttg-gaggactcaaatat-agggaaatactttttctttctaaggcacaatt
s panTro5.chr9                  41844930 116 + 116767853 -----------agagagttactttaaatatta-ctttgttattcaaaataatcacaaaagcactcatcgtaggaaa-acttgtgaggactcaaatat-agggaaatactttttgtttctaaggcacaatt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77806425 114 + 205426864 -------------agagtttccttaaatatta-ctttgctattcaaaataatcacaaaagcactcatcgtaggaaa-acttgtgaggattcaaatat-agggaaatactttttctttgtaaggcataatt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          215730 114 +    245036 -------------agagtttccttaaatatta-ctttgctattcaaaataatcacaaaagcactcatcataggaaa-acttgtgaggattcaaatat-agggaaatactttttctttctaaggcacaatt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42091971 112 -  86207423 -----------agagagtttccttaaatattg-cttcgttattcaaaataattacaaaagcactcatcgtaggaaa-acttgtgaggattcatatat-agggaaatactt----tttctaaggcataatt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204248919 116 - 204787373 -----------agagagtttccttaaatatta-gtttgttattcatactaatcacaaaagcactcatcatagaaaa-acttgtgaggattcaaatat-aggaaaacactttttctttctaaggtataatt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    148134 116 - 192460366 -----------agagagtttccttaaatatta-ctttgttattcatactaatcacaaaagcactcatcatagaaaa-acttgtgaggattcaaatat-aggaaaacactttttctttctaaggtataatt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          167646 116 -  11645122 -----------agagagtttccttaaatatta-ctttgttattcatactaatcacaaaagcactcatcatagaaaa-acttgtgaggattcaaatat-aggaaaacactttttctttctaaggtataatt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          152951 116 -   6739814 -----------agagagttttcttaaatatta-ctttgttattcataataatcacaaaagcactcatcatagaaaa-acttgtgaggattcaaatat-aggaaaacactttttctttctgaagtataatt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    42269 116 - 101219884 -----------agagagtttccttaaatatta-ctttgttattcataataatcacaaaagcactcatcatagaaaa-acttgtgaggattcaaatat-agggaaacactttttctttctaaggtataatt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          165101 116 -    785044 -----------agagagttttcttaaatatta-ctttgttattcataataatcacaaaagcactcatcatagaaaa-acttgtgaggattcaaatat-aggaaaacactttttctttctaaggtataatt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           53788 114 -  10971483 -----------agagagtttccttaaatatta-c--tgttattcaaaataatcacaaaattactcatcatagaaaa-acttgtgaggattcaaatat-agggaaacactttttctttctaaggtataatt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10914594 117 -  13128814 -----------agagagtttccttaaatattaaccttgttattcaaaataatcacaaaagtagccatcgtaggaaa-atttgtgaggattcaaatat-agggaaacacattttatttctaaggcatactt
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7642995 116 +  14377064 -----------AGAGAG-ttccttaaatattatccttgttattcaaaatattcacaaaagtagccatcacaggaaa-atttgtgaggattcaaatgt-agggaaacactttttatttctaaggcataatt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4107000 117 -   9889416 -----------agagagtttccttaaatattaacttcattattcaaaataatcacaaaagtagccattgtaggaaa-atttgtgaggattcaaatat-agggaaacactttttatttctaagacataatt
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20733477 110 +  38779656 -----------ATAGTGTTTCCTTAAGTATTT-CTTTGTTATTCACAATAACCATCAAAGCACCCATCACAGGAAG-ATTTGTAAGGATTCAACTGT-AAGGAGGAAAAAT---TTTCTAAGGAATC---
i otoGar3.GL873528             I 152 I 2
s dasNov3.JH568778               6664522 121 +   6883506 atgttacaatgttagagtttcctcaaacattg---------ttcaaagtaatcacaaaaactccctccatatgaaatatttttgagaattcaattataaaaggaattttttttctttgtgaggggtaatt
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e canFam3.chr31                 28772598 681 -  39895921 I

a score=245310.000000
s hg38.chr14_GL000009v2_random    155082 24 +    201709 ctct--aaagaagttcaccttaactt
s panTro5.chr9                  41845046 24 + 116767853 ctgt--aaagaagttcaccttaattt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77806539 24 + 205426864 ctgt--aaagaaattcaccttaattt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          215844 24 +    245036 ctgt--aaagaaattcaccttaattt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42092083 24 -  86207423 ctgt--aaagaaattcaccttaattt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204249035 24 - 204787373 ctgt--aaagaaattcaccttaattt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    148250 24 - 192460366 ctgt--aaagaaattcaccttaattt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          167762 24 -  11645122 ctgt--aaagaaattcaccttaattt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          153067 24 -   6739814 ctgt--aaagaaattcaccttaattt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    42385 24 - 101219884 ctgt--aaagaaattcaccttaattt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          165217 24 -    785044 ctgt--aaagaaattcaccttaattt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           53902 24 -  10971483 ctgt--aaagaaattcaccttaattt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10914711 24 -  13128814 ctgt--aaaacaagtcaccttaattt
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7643111 24 +  14377064 ctgt--gaagaaattcacctgaattt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4107117 24 -   9889416 ctgt--aaaaaaattcaccttaattt
i aotNan1.NW_018487195v1       C 0 C 0
s tarSyr2.KE934526v1                3604 24 -     19173 TGGG--GAAAAAAATTGCCTTAATTT
i tarSyr2.KE934526v1           N 0 N 0
s otoGar3.GL873528              20733589 26 +  38779656 CTAGTAAAAAAAAATCAGCTTAATTT
i otoGar3.GL873528             I 2 C 0
s dasNov3.JH568778               6664643 21 +   6883506 ctgg--gaa-aaataTACCT--ATTT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e canFam3.chr31                 28772598 681 -  39895921 I

a score=5420719.000000
s hg38.chr14_GL000009v2_random    155106 606 +    201709  
s panTro5.chr9                  41845070 605 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77806563 607 + 205426864  
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          215868 608 +    245036  
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42092107 604 -  86207423  
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204249059 611 - 204787373  
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    148274 611 - 192460366  
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          167786 612 -  11645122  
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          153091 618 -   6739814  
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    42409 621 - 101219884  
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          165241 618 -    785044  
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           53926 622 -  10971483  
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10914735 612 -  13128814  
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7643135 610 +  14377064  
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4107141 610 -   9889416  
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20733615 579 +  38779656  
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6664664 562 +   6883506  
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e canFam3.chr31                 28772598 681 -  39895921 I

a score=3975952.000000
s hg38.chr14_GL000009v2_random    155712 437 +    201709 ctcgaattggagcaagaaaaccaggccattatatttctgtaccaagcagttctcggatgtgggatg-ccttgagaagggac-atgaacttggatgaaggaactttactgtgctgtgagtgttgttgccaggagtcatctgtcaacactcccaggagacggg-aaattatg----ctttagtcactgaggcggcatct-ag-tgtcagacc---------------------------------------gcagcCTTGTTAAACAGAGCCAGATTTTGGAGGATGGATGGTGGGTTTAACATTTGGGGCTTGACGTCTTgcccccacaagctgctgctggcctcttccttgtccatttctgtgtggcttgtttaggccccccagcttcctgcttcttctttaccatatttggaatgcaaaaatctacacgtaatttggcccatggtcccttctgcttagacatatccttgtagctattttttttt
s panTro5.chr9                  41845675 436 + 116767853 ctcgaattggagcaagaaaaccaggccattatatttctgtaccaagcagttctcagatgtgggatg-ccttgagaagggac-atgaacttggatgaaggaactttactgtgctgtgagtattgttgccaggactcagctgtcaacactcccaggagaaggg-gaattatg----ctttagccactgaggcggcatgt-ag-tgtcagacc---------------------------------------acagcCTTGTTAAACAGAGCCAGAATTTGGAGGATGGTTGGTGGGTTTTACatttggggctcgacatcttgtccccacaatctgctgctggcctcttctttgcccatttctgtgtggcctgtttaggccccccagcttcctgcttcttcttcaccatatttggaatgcaaaaatctacacgtaatttggcccatggtcccttctgcttagacatatccttgtagcta-ttttttta
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77807170 436 + 205426864 ctcaaattggagcacgcaagccaggccattatatttctgtaccaagcagttctcggatgtgggatg-ccttgagaaggcac-atgaacttggatgaaggaactttACTGTGCTGTGAGTATTGTTGCCAGGAGTCAGCTGTCAACACTCCTAGGAGACGGG-GAATTATG----CTTTAGTCACTGAGGTGGCATCT-AG-TGCCAGACC---------------------------------------ACAGCCTTGttaaacagagccagaatgtggaggatggatggtgggtttaacatttggggcttgacgtcttgtccccacaagctgctgctggcctcttccttgtccatttcattgtggcctgtttaggcccactggcttcctgctgcttctttacca-gtttggaatgcaaaaatctactcgtaatttggcccatggtctcttctgcttagacatatccttgtagctattttttttt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          216476 437 +    245036 ctcaaattggagcaagcaagccaggccattatatttctgtaccaagcagttctcggatgtgggatg-ccttgagaagggac-atgaacttggatgaaggaactttactgtgctgtgagtattgttgccaggagtcagctgtcaacactcctaggagacggg-gaattacg----ctttagtcactgaggcggcatct-ag-tgccagaac---------------------------------------acagcCTTGttaaacagagccagaatttggaggatggatggtgggtttaacatttggggcttgacgtcttgtccccacaagctgctgctggcctcttccttgtccatttctgtgtggcctgtttaggtccactgacttcctgctgcttctttaccatatttggaatgcaaaaatctactcataatttggcccatggtcccttctgcttagacatatccttgtagctatttttgtta
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42092711 435 -  86207423 ctcaaattggagcaagcaagccaggccattatatttgtgtaccaagcagttctcggatgtgggatg-ccttgagaagggac-atgaacttggatgaaggaactttactgtgctgtgagtgttgttgccaggagtcagctgtcaacactcccaggagacggg-gaattatg----ctttagtcactgaggtggcacct-ag-tgccagacc---------------------------------------acagcCTTGTTAAACAGAGCCAGAATTTGGAGGATGGATGGTGGGTTTAACATTTGGGGCTTGACATCTTgtcccgacaagctgctgctggcctattccttgtccatttctgtgtggcctgtttaggcccactggcttcctgcttcttctttaccatatctggaatgcaaaaatctactcgtaatttggcccatgttcccttctgcttagacatatccttgtagct--tttttttt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204249670 436 - 204787373 ctcaaattggagcaaggaagccaagccattatatttctgtaccaagcagtcctcggatgtgggatg-ccctgagaagggac-atgaacttggatgaaggaactttactgtgctgtgagtattattgccaggagtcagctgtcagcactcccaggagagggc-gaatgatgctttctttagtcactgaggaggcatct-ag-tgccagatc---------------------------------------acagcCTTGTTAAAAAGAGCCAGAATTTGGAGGATGGACGGTGGGTTTAACATTTGGGGCTTGACTTCTTgtcctcacaagctgctgctggcctcttccttgtccacttctgtgaggcctgtttaggcccacgagcttcctgctgcttctttcctgtatttggaatgcaaaaatatactagtaatttctcccatggtcccttctgcttagacatatccttgtagcta-----tttt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    148885 436 - 192460366 ctcaaattggagcaaggaagccaagccattatatttctgtaccaagcagtcctcggatgtgggatg-ccctgagaagggac-atgaacttggatgaaggaactttactgtgctgtgagtattattgccaggagtcagctgtcagcactcccaggagagggc-gaatgatgctttctttagtcactgaggaggcatct-ag-tgccagatc---------------------------------------acggcCTTGTTAAAAAGAGCCAGAATTTGGAGGATGGACGGTGGGTTTAACATTTGGGGCTTGACTTCTTgtcctcacaagctgctgctggcctcttccttgtccacttctgtgaggcctgtttaggcccacgagcttcctgctgcttctttcctgtatttggaatgcaaaaatatactagtaatttctcccatggtcccttctgcttagacatatccttgtagcta-----ttTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          168398 436 -  11645122 ctcaaattggagcaaggaagccaggccattatatttctgtaccaagcagtcctcggatgtgggatg-ccctgagaagggac-atgaacttggatgaaggaactttactgtgctgtgagtattattgccaggagtcagctgtcagcactcccaggagagggc-gaatgatgctttctttagtcactgaggaggcatct-ag-tgccagatc---------------------------------------acggcCTTGTTAAAAAGAGCCAGAATTTGGAGGATGGACGGTGGGTTTAACATTTGGGGCTTGACTTCTTgtcctcacaagctgctgctggcctcttccttgtccacttctgtgaggcctgtttaggcccacgagcttcctgctgcttctttcctgtatttggaatgcaaaaatatactagtaatttctcccatggtcccttctgcttagacatatccttgtagcta-----tttt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          153709 433 -   6739814 ctcaaattggagcaaggaagccaggccattatatttctgtaccaagcagtcctcggatgtgggata-ccctgagaagggac-atgaacttggatgaaggaactttactgtgctgtgagtattattgccaggagtcagctgtcagcactcccaggagacggc-gaatgatgctttctttagtcactgaggaggcatct-ag-tgccagacc---------------------------------------acggcCTTGTTAAAAAGAGCCAGAATTTGGAGGATGGACGGTGGGTTTAACATTTGGGGCTTGACTTCTTgtcctcacaagctgctgctggcctct---ttgtccatttctgtgaggcctgtttaggcccaccagcttcctgctgcttctttaccgtatttggaatgcaaaaatatactagtaatttctcccatggtcccttctgcttagatatctccttgtagcta-----tttt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    43030 436 - 101219884 ctcacattggagcacggaagccaggccattatatttctgtaccaagcagtcctcggatgtggggtg-ccctgagaagggac-atgaacttggatgaaggaactttactgtgctgtgagtattattgccaggagtcagctgtcaacactcccaggagacggc-gaatgatgctttctttagtcactgaggaggcatct-ag-tgccagacc---------------------------------------acggcCTTGTTAAAAAGAGCCAGAATTTGGAGGATGGACGGTGGGTTTAACATTTGGGGCTTGACTTCTTgtcctcacaggctgctgctggcctcttccttgtccatttctgtgaggcctgtttaggcccaccagcttcctgcttcttctttaccatatttggaatgcaaaaatatactagtaatttggcccatggtcccttctgcttagacatatccttgtagcta-----ttTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          165859 433 -    785044 ctcaaattggagcaaggaaaccaggccattatatttctgtaccaagcagtcctcggatgtgggata-ccctgagaagggac-atgcacttggatgaaggaactttactgtgctgtgagtattattgccaggagtcagctgtcagcactcccaggagacggc-gaatgatgctttctttagtcactgaggaggcatct-ag-ggccagacc---------------------------------------acggcCTTGTTAAAAAGAGCCAGAATTTGGAGGATGGACGGTGGGTTTAACATTTGGGGCTTGACTTCTTgtcctcacaagctgctgctggcctct---ttgtccacttctgtgaggcctgtttaggcccaccagcttcctgttgcttctttaccgtatttggaatgcaaaaatatactaataatttggcctatggtcccttctgcttagacatctccttgtagcta-----tttt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           54548 436 -  10971483 ctcaaattggagcaaggaaaccaggccattgtatttctgtaccaagcagtcctcggatgtgggatg-ccctgagaaggaac-atgaacttggatggaggaactttactgtgctgtgagtattattgccaggggtcagctgtcaacactcccaggagacggg-gaacgatgctttctttagtcactgaggaggcatcc-ag-tgccagacc---------------------------------------acggcCTTGTTAAAAAGAGCCAGAATTTGGAGGATGGACGGTGGGTTTAACATTTGGGGCTTGACTTCTTgtcctcacaagctgccgctggcctcttccttgtccatttctgtgtggcttctttaggcccaccagcttcctgctgcttctttaccatgtttggaatgcaaaaatatactagtaatttggcccatggtcccttctgcttagacatatccttgtagcta-----tttt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10915347 472 -  13128814 ctcaaattggagcaagaaagtcaggccgttttattttcgtatcaagcagtactcggatgtgggatg-ccctgggaagcgactgtgagcttggatgaagaaacttcactgtactgtgagtattgttgccaggagtcagctgtaaacaatcccaggagctggg-AAATGATG----CTTCAGTTACTGAGGAGGCAACT-AG-GGCCAGACTATGGAGTAGATAAAAATGTAAACATAGTGCCAGGCCACAACAGCCTTGTTAAACAGAGTAAGGATTTGGAGGATGGACGTCAGGTTTAACATTTGGGGCTTGACTTCTTgtctccataagctactgctgccctct-----gttcatttctgtgtgtcctgtttaggctcgccagctttttgcttctcctttaccgtatttggaatgcaaaggtcttctcgtaatttggcccacggtcccttctgcttagacatatccgtgtagctactttttttc
i saiBol1.JH378168             C 0 I 3
s cebCap1.NW_016107322v1         7643745 464 +  14377064 ctcaaattagagcaagcaagtccggccattgtattttcgtaccaagcagtactcggatgtgggatg-ccctaggaagcgactgtgagcttggatgaagaaactttACTGTGCTGTGAGTATTGTTGCCAGGAGTCAGCTGTAAACAATCCTAGGAGCTGGG-AAATGATG----CTTCAGTCACTGAGGAGGCAACT-AG-CGCCAGACTGTGGAGCAGATAAAAATGT----ATAGTGCCAGGCC---ACAGCCTTGTTAAAC-GAGTCAGGATTTGGAGGATGGACGTCAGGTTTAACATTTGGGGCTTGACTTCTTTTCCCCATAAGCTACTGCTGCCCTCT-----GTTCATTTCTGTGTGTCCTGTTTAGGCTGGCCAGCTTTCTGCTTCTCCTTTACCATATTTGGAATGCAAAGGTCTTCTCGTAATTTGGCCCACGGTCCCTTCTGCTTAGACATATCCTTATAGCTACTTTTTTTC
i cebCap1.NW_016107322v1       C 0 I 3
s aotNan1.NW_018487195v1         4107751 469 -   9889416 ctcaaattggagcaaggaagtcgggccattttatttttgtaccaagcagtactcggatgtgggatg-ccctaggaagcgactgtgagcttggatgaagaagcttcactgtgctgtgagtattgttgccaagagtcagctgtaaacaatcccaggagctggg-AAATGATG----CTTCAGTCACTGACGAGGCAACT-AG-TGCCAGACTATGGAGTAGATAAAAATGTAAAGATAGTGCCAGGCC---ACAGCCTTGTTAAACAGAGTCAGGATTTGGAGGATGGACGTCAGGTTTAAgatctggggcttgacttcttgtccccataagctactgctgccctct-----gttcatttctgtgtgtcctgtttaggctcaccagctttctgctgcttctttaccatatttggaatgcaaaggtcttctcgtaatttggcccacggtcccttctgcttagacatatccttgtagctactttttttt
i aotNan1.NW_018487195v1       C 0 I 790
s otoGar3.GL873528              20734194 400 +  38779656 ctcaacttggaccagagaggccagccctttct---------------aGTCTAAGGACATGGGGTGTTCCTGGAAAGGGTTTGTGAACTTGGTTGAGGGGACTTGACTTATCTGTGAGCACTGTTGCCAGGAGTCGGGGACCAACACACCCAGGCACTGGG-GCACACTG----CTTCAGTAGCTAGGGAGGCACCT-AC-TGGCATAGC---------------------------------------ACAG--TTGttaaacagagccagtgcttggggactggactgttggtttgacatttggtgcttggccgccttcctccacaggctgctggtggactca--tttgtccatt--------------------ccaccagctccctggagcttccttaccacatgtggactgtgaaagtcctctgatgagtctactcatggtcccttctgcctagacacacccttgcagctactttttctg
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28773279 428 -  39895921 cctaaattggtgtaaaggagccagaactttatgtaactacattgtccagcctttggatatggt----ctcttagaagttt--atgaacttggatgagatattcatattcagctgtga-cattactgcaaggagtcagctgtcagcagccctagaagctgggagaatgctg----ctttagtcctgatgaaggcctctggg-tggtagagc---------------------------------------acagcCTTGGtaagcagagccagagtgtgggagatggatggtagttaggtccttag----ctgaccacctgtccacacaagccattgttggtctctcctttgtccattcccacatggctcaatgaggcccacaagcccactgttggttctttctcatattgggagcataaaaatcctctcatgagtctcctgatggccgcttctgcctaaaca--ccattgtagtttttttatttt
i canFam3.chr31                I 681 I 5
s dasNov3.JH568778               6665226 344 +   6883506 cccaaattggaacaagggagtcaggactttacatgcccacattgtatagaacttggatgtgcactattcctggaaagggtttgtaaactgggatgagatgtctttcc--------------------------tcagctgTCTACATTC-----AAtgggg-gaatgagg----ctttagtactgaaggaggcatct-ggttggcagatc---------------------------------------acagcTTTATTAGATGG--------CATGGACGATGA--GGGTGGTGAATCATTTGGCACTTGGCCATCTGTCCACACACGCT----------TCTCCCTTA-------------GCCTTGTTTAGACCC-CTAGCTCACG--------TTTGCCTTGTCAGGAA--------------------TCTGTGCATGACCCCTT-TGCCTAGACACATCCTTGCAGCCACTATTTT--
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I

a score=747583.000000
s hg38.chr14_GL000009v2_random    156149 114 +    201709 aaagatgactatgccttctagaatatttctaagaaat--tgc---ctaagtcaccactgctcaccaagaggcc--tt-tgttttttcctcttcttaaccatgggaaaggaatgt-aggagggt
s panTro5.chr9                  41846111 114 + 116767853 aaagatgactatgccttctagaatatttctaagaaac--tgc---ctaagtcaccactgctcatcaaaaggcc--tt-tgttttttcctcttcttaaccatgggaaagcaatgt-aggagtgt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77807606 106 + 205426864 aaagatgactatgccttctagaatatttctaagaaac--tgc--------tcaccactgctcaccaagaggcc--tt-tgctttttcc---tcttaaccatgggaaaggaatgt-aggggtgt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          216913 109 +    245036 aaagatgactatgccttctagaatatttctaagaaac--tgc--------tcaccagtgctcaccaagaggcc--tt-tgctttttcctcttcttaaccatgggaaaggaatgt-aggggtgt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093146 113 -  86207423 aaagatgactatgccttctagaatatttctaagaaac--tgc---ctaagtcaccactgct-accaagaggcc--tt-tgctttttcctcttcttaactatgggaaaggaaggt-aggagtgt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250106 101 - 204787373 aaagatgacgattccttctagaatatttct---aaac--tgc---ctaagtcaccactgctcaccaagaggcc--tt-tgct---------tcttaaccgt-ggaaaggaacgt-aggagtgt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    149321 101 - 192460366 AAAGATGACGATTCCTTCTAGAATATTTCT---AAAC--TGC---CTAAGTCACCACTGCTCACCAAGAGGCC--TT-TGCT---------CCTTAACCGT-GGAAAGGAACGT-AGGAGTGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          168834 101 -  11645122 aaagatgacgattccttctagaatatttct---aaac--tgc---ctaagtcaccactgctcaccaagaggcc--tt-tgct---------tcttaaccgt-ggaaaggaacgt-aggagtgt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154142 104 -   6739814 aaagatgacgattccttctagaatatttctaagaaac--tgc---ctaagtcaccactgctcaccaagaggcc--tt-tgct---------tcttaaccgt-ggaaaggaatgt-aggagtgt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    43466 105 - 101219884 AAAGATGACGATTCCTTCTAGAATATTTCTAAGAAAC--TGC---CTAAGTCACCACTGCTCACCAAGAGGCC--TT-TGCT---------TCTTAACTGTGGGAAATGAACAT-AGGAGTGC
i chlSab2.chr22                C 0 I 184
s manLeu1.NW_012099043v1          166292 104 -    785044 aaagatgatgattccttctagaatattcctaagaaac--tgc---ctaagtcaccactgctcaccaagaggcc--tt-tgct---------tcttaaccgt-ggaaaggaacgt-aggagtgt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           54984 105 -  10971483 aaagatgactattccttctagaatatttataagaaac--tgc---ctaagtcaccactgctcaccaagaggcc--tt-tgct---------tcttaactgtgggaaaggaacgt-acgagtgt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10915822 113 -  13128814 aaagatgattatgccttctagaatatttctaagaaac--tgc---ctgagtcctcacttctcatcaagaggcc--tt-tgctttctcctcttcttaaccat-ttaaaggaaggt-gggagtgt
i saiBol1.JH378168             I 3 C 0
s cebCap1.NW_016107322v1         7644212 113 +  14377064 AAAGATGATTATGCCTTCTAGAATATTTCTAAGAAAC--TGC---CTAAGTCCTCACTTCTCATCAAGAGGCC--TT-TGCTTTCTCCTCTTCTTAACCAT-TTAAAGGAAGGT-AGGAGTGT
i cebCap1.NW_016107322v1       I 3 C 0
s otoGar3.GL873528              20734594 117 +  38779656 --gattctttatgcctcctagtcaatttctaggaaactgtgc---ttcagtcctcaatgcACATCAAGAGGCTAATC-TGTTTTATTCTCTTCTTAGCAATGCAAAAGGAATTTCAAGGGTGC
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28773712 118 -  39895921 tgggacatttagatctcatgggatatttctaggaaat--tgctttctaggtctccactgctgatcaaggaacc--ttctgttttcccctccTCTCAACCACAGAGATGGAATGT-AGAGGTGT
i canFam3.chr31                I 5 C 0
s dasNov3.JH568778               6665570  49 +   6883506 ------------------------------------------------------------------TAGGATC--TT-TACA----CCTCCTCTAAACTATGGGAAGCAAATGT-AGAGGTGT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I

a score=57709.000000
s hg38.chr14_GL000009v2_random    156263 5 +    201709 aggga
s panTro5.chr9                  41846225 5 + 116767853 aggga
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77807712 5 + 205426864 aggga
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217022 5 +    245036 aggga
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093259 5 -  86207423 aggga
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250207 5 - 204787373 aggga
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    149422 5 - 192460366 AGGGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          168935 5 -  11645122 aggga
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154246 5 -   6739814 aggga
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    43755 5 - 101219884 AGGGA
i chlSab2.chr22                I 184 C 0
s manLeu1.NW_012099043v1          166396 5 -    785044 aggga
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55089 5 -  10971483 aggga
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10915935 5 -  13128814 aggga
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7644325 5 +  14377064 AGGGA
i cebCap1.NW_016107322v1       C 0 C 0
s otoGar3.GL873528              20734711 5 +  38779656 AGGAA
i otoGar3.GL873528             C 0 I 527
s canFam3.chr31                 28773830 5 -  39895921 GGAGA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6665619 5 +   6883506 gggga
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I

a score=43760.000000
s hg38.chr14_GL000009v2_random    156268 7 +    201709 gtggata
s panTro5.chr9                  41846230 7 + 116767853 gtggata
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77807717 7 + 205426864 gtggata
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217027 7 +    245036 gtggata
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093264 7 -  86207423 gtgagta
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250212 7 - 204787373 gtagata
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    149427 7 - 192460366 GTAGATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          168940 7 -  11645122 gtagata
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154251 7 -   6739814 gtagata
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    43760 7 - 101219884 GTAGATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          166401 7 -    785044 gtagata
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55094 7 -  10971483 gcagata
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10915940 6 -  13128814 gtggat-
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7644330 6 +  14377064 GTGGAC-
i cebCap1.NW_016107322v1       C 0 C 0
s canFam3.chr31                 28773835 7 -  39895921 GTAGATT
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6665624 7 +   6883506 gtggatc
i dasNov3.JH568778             C 0 I 2
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I
e otoGar3.GL873528              20734716 527 +  38779656 I

a score=181439.000000
s hg38.chr14_GL000009v2_random    156275 20 +    201709 ttttctaacctgg--------aaaaa-----ac
s panTro5.chr9                  41846237 20 + 116767853 ttttctaacctgg--------aaaaa-----ac
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77807724 20 + 205426864 ttttctaacctgg--------aaaaa-----ac
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217034 21 +    245036 ttttctaacctgg-------aaaaaa-----ac
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093271 20 -  86207423 ttttctaacctgg--------aaaaa-----ac
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250219 20 - 204787373 ttttctaacctgg--------aaaaa-----tc
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    149434 20 - 192460366 TTttctaacctgg--------aaaaa-----tc
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          168947 20 -  11645122 ttttctaacctgg--------aaaaa-----tc
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154258 20 -   6739814 ttttctaacctgg--------aaaaa-----tc
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    43767 20 - 101219884 TTttctaacctgg--------aaaaa-----tc
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          166408 20 -    785044 ttttctaacctgg--------aaaaa-----tc
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55101 20 -  10971483 ttttctaacctgg--------aaaaa-----tc
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10915946 23 -  13128814 ttttctaacctgg-----aaaaaaaa-----tc
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7644336 28 +  14377064 TTTTCTAACCTGGAAAAAAAAAAAAA-----TC
i cebCap1.NW_016107322v1       C 0 C 0
s otoGar3.GL873528              20735243 25 +  38779656 ttttctagtctgg--------ggaaaatctttc
i otoGar3.GL873528             I 527 C 0
s canFam3.chr31                 28773843 20 -  39895921 TTTCCTAATCTGG--------GGAAA-----AT
i canFam3.chr31                I 1 I 247
s dasNov3.JH568778               6665633 20 +   6883506 ttttctagatggg--------aaaaa-----tc
i dasNov3.JH568778             I 2 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I

a score=202374.000000
s hg38.chr14_GL000009v2_random    156295 30 +    201709 ---tcattttaccc-tatataattttt------gt----tagca
s panTro5.chr9                  41846257 30 + 116767853 ---tcattttaccc-tatataattttt------gt----tagca
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77807744 29 + 205426864 ---tcattttacca-tacat-attttt------gt----tagcg
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217055 29 +    245036 ---tcattttaccc-tatat-attttt------gt----tagca
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093291 30 -  86207423 ---tcagtttaccc-tatataattttt------gt----tagcg
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250239 30 - 204787373 ---tcattttaccc-tgtataattttt------ct----tagca
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    149454 30 - 192460366 ---tcattttaccc-tgtataattttt------ct----tagca
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          168967 30 -  11645122 ---tcattttaccc-tgtataattttt------ct----tagca
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154278 30 -   6739814 ---tcattttaccc-tgtataattttt------ct----tagca
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    43787 30 - 101219884 ---tcattttaccc-tatataattttt------ct----tagca
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          166428 30 -    785044 ---tcattttaccc-tatataattttt------ct----tagca
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55121 30 -  10971483 ---tccttttaccc-tatataattttt------ct----tagca
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10915969 31 -  13128814 ---tccttttacctgtgtataattttt------ct----tagca
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7644364 30 +  14377064 ---TCCTTTTACCT-TGTATAATTTTT------CT----TAGCA
i cebCap1.NW_016107322v1       C 0 C 0
s otoGar3.GL873528              20735268 37 +  38779656 ---cctttttatgtgtatatcatttttttctcatt----cagca
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6665653 35 +   6883506 tttttcctttccca-cacacaatcttt------ctgtcataa--
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I
e canFam3.chr31                 28773863 247 -  39895921 I

a score=1602727.000000
s hg38.chr14_GL000009v2_random    156325 200 +    201709 --aattcctt---ctttgcacttactccacaatctttccaaattctcccaaatgctcaagcttttaaaaaacaaaagacagaaa-gatagcaggttatta--ggttttccaccaaaccttttctttctattcctttacatcagtgagcttagaataactctgctcctgg-aactgggaaag-ggacttgggaaaa-----ga------------------------aag--gaaaaaaaa-g-
s panTro5.chr9                  41846287 201 + 116767853 --aattcctt---ctttgcacttactctacaatctttccaaattctcccaaatgctcaagcttttaaaaaacaaaagacagaaaggataacaggttattg--gtttttccaccaaaccttttctttctattcctttacatcagtgagcttagaataactctactcctgg-aactgggaaag-ggacttggaaaaa-----ga------------------------aag--aaaaaaaaa-g-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77807773 196 + 205426864 --aattcctt---ctttgcacttactccacagtctttccaaattctcccaaatcctcaagctttt-aaaaacaaaagacagaaatgatagcaggttattattttttttccaccaaaccttttctttctattccttcacatcagtgagcttagagtaa--ctactcctgg-aactgggaaag-ggacttgggaaaa-----ga------------------------------aaaaaaaa-g-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217084 201 +    245036 --aattcctt---ctttgcacttactccacagtctttccaaattctcccaaatcctcaagcttttaaaaaacaaaagacagaaatgatagcaggatattattttttttccaccaaaccttttctttctattccttcacatcagtgagcttagaataa--ctgctcctgg-aactgggaaag-ggacttgggaaaa-----ga------------------------aag--gaaaaaaaa-g-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093321 199 -  86207423 --aattcctt---ctttgcacttactccacaatctttccaaattctcccaaatgctcaagcttttaaaaaacaaaagacagaaatgatagcaggttatta--ttttttccaccaaaccttttctttctattcctttacgtcaatgagctgagaataa--ctgctcctgg-aactgggaaag-ggacttgggaaaa-----ga------------------------aag--aaaaaaaaa-g-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250269 200 - 204787373 --aattcctt---ctttgcacttattccacaatctttccaaattctcccaaatgctcaagcttttaaaaaacaaaagacagaaataatagcaggttgtta--ttttttccactaaatcttttctttctattcctttacatcaatgagcttagaataactctgctcctgg-aattgggaaag-ggacttgggaaaa-----ga------------------------aag--aaaaaaaaa---
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    149484 200 - 192460366 --aattcctt---ctttgcacttattccacaatctttccaaattctcccaaatgctcaagcttttaaaaaacaaaagacagaaataatagcaggttgtta--ttttttccactaaatcttttctttctattcctttacatcaatgagcttagaataactctgctcctgg-aattgggaaag-ggacttgggaaaa-----ga------------------------aag--aaaaaaaaa---
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          168997 200 -  11645122 --aattcctt---ctttgcacttattccacaatctttccaaattctcccaaatgctcaagcttttaaaaaacaaaagacagaaataatagcaggttgtta--ttttttccactaaatcttttctttctattcctttacatcaatgagcttagaataactctgctcctgg-aattgggaaag-ggacttgggaaaa-----ga------------------------aag--aaaaaaaaa---
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154308 202 -   6739814 --aattcctt---ctttgcacttattccacaatctttccaaattctcccaaatgttcaagcttttaaaaaacaaaagacagaaataatagcaggttgtta--ttttttccacgaaatcttttctttctattcgtttacatcaatgagcttagaataactctgctcctgg-aattgggaaag-ggacttgggaaaa-----ga------------------------aagaaaaaaaaaaa---
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    43817 200 - 101219884 --aattcctt---ctttgcacttattccacaatctttccaaattctcccaaatgctcaagcttttaaaaaacaaaagacagaaataatagcaggttatta--ttttttccacgaaatcttttctttctattcctttacatcaatgagcttagaataactctgctcctgg-aattgggaaag-ggacttgggaaaa-----ga------------------------aag--aaagaaaaa---
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          166458 200 -    785044 --aattcctt---ctttgcacttattccacaatctttccaaattctcccaaatgctcaagcttttaaaaaacaaaagacagaaataatagcaggttgtta--ttttttccacgaaatcttttctttctattcgtttacatcaatgagcttagaataactctgcttctgg-aattgggaaag-ggacttgggaaaa-----ga------------------------aag--aaaaaaaaa---
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55151 185 -  10971483 --aattcctt---ctttgcacttattccacaatctttccaaattctcccaaatgctcaagcttttaaaaaacaaaagacagg----------------ta--tgttttccacaaaaccttttctttctattcctttacatcaatgagcttagaataactctgctcctgg-aattgggaaag-ggacttgggaaaa-----ga------------------------aag--aaaaaaaaag--
i colAng1.NW_012123820v1       C 0 I 181
s saiBol1.JH378168              10916000 195 -  13128814 --aatccctt---ctttg-acttattccacaatctttttaaattctccaaaatgctcaaacatttagaaaacaaaagacagaaataat---aggctattG--TTTTTTCCATCAAACCCTTTCTTTCTGTTTCTTTACAACAATGAGCTTAGAATAATTCTGCTCGGGG-AACTGCGAAAG-GGACTTGGTAAAA-----GA------------------------AAG--AAAACAAA----
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7644394 194 +  14377064 --AATCCCTT---CTTTG-ACTTATTCCACAATCTTTTTAAATTATCCGAAATGCTCAGACATTTAG-AAACAAAAGACAGAAATAAT---AGGTTATTG--TTTTTTCCATCAAACCCTTTCTTTCTGTTTCTTTACATCAATAAGCTTAGAATAATTCTGCTCCTGG-AACTGCGAAAG-GGACTTGGGAAAA-----GA------------------------AAG--AAAAAAAA----
i cebCap1.NW_016107322v1       C 0 C 0
s otoGar3.GL873528              20735305 213 +  38779656 --aatactttttcctttccatttgttttccaatccttctaaattcttaca---------gctttttgaaaacaaaatccagaaagagttgtaaggtat----tccATTCCACTAAAC----TCTTCCCAAACTTGTCAATCAATGAGCCTGGAATAACTTTGCTCTTGATACTTGACAAGG-GGACCTGGGAAAA-----TACTGCaacaaacaaacaaacaaacaaac--aaacaaaAA---
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28774110 206 -  39895921 --aatacttt---ttttccaacagttccatgattcttttaaattctccctaagccttaagtttttagaagtcaaaagtcagaaaaaatcataggttactat-tcctttcCATGAAATGTTTTCTTTTCATTCCTCAAAATCAGTGAACCC-GAATCACTTTGCTCCTGC-AACTGGACAAGAAGACCTAGAAAAA-----TA---------------CTAGGGGGTGGG--GAAAG-------
i canFam3.chr31                I 247 C 0
s dasNov3.JH568778               6665688 208 +   6883506 atcttctcct---ttttccatctgttccacagttcttcaaaattctctcaacag-ttaagcttttagaaaacaaaagtcagaaggtattgtatgtgactaa-tcctttctatcaacctcttcctttccattcctgcaaatcagtgagaacagaatagcttttctcttag-atctgtaagaa-agttcttagaaaaatactga------------------------aag--aaaaaaaaa--A
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I

a score=303401.000000
s hg38.chr14_GL000009v2_random    156525 36 +    201709 c----tctcaaagtttaacatca-caaaa-cattatagtcac
s panTro5.chr9                  41846488 36 + 116767853 c----tctcaaagtttaacatca-caaaa-cattatAATCAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77807969 36 + 205426864 c----tctcaaagtttaacatca-caaaa-cattatagtcac
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217285 36 +    245036 c----tctcaaagtttaacatca-caaaa-cattatagtcac
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093520 36 -  86207423 t----tctcaaagtttaacatca-caaaa-cattatagtcac
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250469 36 - 204787373 c----tctcaaagtttaacatca-caaaa-cattacagtcac
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    149684 36 - 192460366 c----tctcaaagtttaacatca-caaaa-cattacagtcac
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169197 36 -  11645122 c----tctcaaagtttaacatca-caaaa-cattacagtcac
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154510 36 -   6739814 c----tctcaaagtttaacatca-caaaa-cattacagtcac
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44017 36 - 101219884 a----tctcaaagtttaacatca-caaaa-cattacagtcac
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          166658 37 -    785044 ac---tctcaaagtttaacatca-caaaa-cattacagtcac
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55517 36 -  10971483 -c---tctcaaAGTTTAACATCA-CAAAA-CATCACAGTCAC
i colAng1.NW_012123820v1       I 181 C 0
s saiBol1.JH378168              10916195 36 -  13128814 C----TCTCAAAAGTTAACATTA-CAAAA-CATTATGGTCAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7644588 36 +  14377064 C----TCTCAAAAGTTAACATTA-CAAAA-CATTACAGTCAC
i cebCap1.NW_016107322v1       C 0 I 368
s otoGar3.GL873528              20735518 34 +  38779656 -----CTTTGAAAATGAACATGA-CAAAA--ATTACAATCAA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28774316 35 -  39895921 ------CCCCAGAATTAACATCA-TAAAAACACCGTAATCAC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6665896 39 +   6883506 -CAAACCTCAAAA-TTAACATTGCCGAAA-CTTCATAGTCAC
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I

a score=1841.000000
s hg38.chr14_GL000009v2_random    156561 1 +    201709 -T
s panTro5.chr9                  41846524 1 + 116767853 -T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808005 1 + 205426864 -T
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217321 1 +    245036 -T
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093556 1 -  86207423 -T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250505 1 - 204787373 -T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    149720 1 - 192460366 -T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169233 1 -  11645122 -T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154546 1 -   6739814 -T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44053 1 - 101219884 -T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          166695 1 -    785044 -T
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55553 1 -  10971483 -T
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20735552 1 +  38779656 -T
i otoGar3.GL873528             C 0 I 336
s canFam3.chr31                 28774351 1 -  39895921 -T
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6665935 1 +   6883506 A-
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I
e cebCap1.NW_016107322v1         7644624 368 +  14377064 I
e saiBol1.JH378168              10916231 0 -  13128814 C

a score=-57905.000000
s hg38.chr14_GL000009v2_random    156562 12 +    201709 GC------TATttta-------tta---
s panTro5.chr9                  41846525 16 + 116767853 GC------TATttta---ttattta---
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808006 12 + 205426864 GC------TATTTTA-------TTA---
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217322 12 +    245036 GA------TATTTTA-------TTT---
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093557 19 -  86207423 Gt------tattttttatttattta---
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250506 18 - 204787373 GT------tttattt-atttattta---
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    149721 18 - 192460366 GT------tttattt-atttattta---
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169234  6 -  11645122 GT-------------------ttta---
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154547  2 -   6739814 Gt--------------------------
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44054 24 - 101219884 Gttatttatttattt-atttattta---
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          166696  2 -    785044 GT--------------------------
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55554  2 -  10971483 Gt--------------------------
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10916231 10 -  13128814 ---------------CGTATTTTTA---
i saiBol1.JH378168             C 0 I 355
s canFam3.chr31                 28774352  7 -  39895921 ------------------ATATTTG---
i canFam3.chr31                C 0 I 5
s dasNov3.JH568778               6665936 12 +   6883506 ----------------TTATTTTTAGTG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I
e otoGar3.GL873528              20735553 336 +  38779656 I
e cebCap1.NW_016107322v1         7644624 368 +  14377064 I

a score=42640.000000
s hg38.chr14_GL000009v2_random    156574 9 +    201709 tttatttat
s panTro5.chr9                  41846541 9 + 116767853 tttatttat
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808018 9 + 205426864 tttatttat
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217334 9 +    245036 ATTAtttat
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093576 9 -  86207423 tttatttat
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250524 9 - 204787373 tttatttat
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    149739 9 - 192460366 tttatttat
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169240 9 -  11645122 tttatttat
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154549 7 -   6739814 --tatttat
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44078 9 - 101219884 tttatttat
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          166698 5 -    785044 ----tttat
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55556 7 -  10971483 --tatttat
i colAng1.NW_012123820v1       C 0 C 0
s canFam3.chr31                 28774364 9 -  39895921 TTCAGTGAT
i canFam3.chr31                I 5 C 0
s dasNov3.JH568778               6665948 9 +   6883506 TGGAGTGGT
i dasNov3.JH568778             C 0 I 347
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I
e otoGar3.GL873528              20735553 336 +  38779656 I
e cebCap1.NW_016107322v1         7644624 368 +  14377064 I
e saiBol1.JH378168              10916241 355 -  13128814 I

a score=4530.000000
s hg38.chr14_GL000009v2_random    156583 1 +    201709 t
s panTro5.chr9                  41846550 1 + 116767853 t
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808027 1 + 205426864 t
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217343 1 +    245036 t
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093585 1 -  86207423 t
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250533 1 - 204787373 t
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    149748 1 - 192460366 t
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169249 1 -  11645122 t
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154556 1 -   6739814 t
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44087 1 - 101219884 t
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          166703 1 -    785044 t
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55563 1 -  10971483 t
i colAng1.NW_012123820v1       C 0 C 0
s canFam3.chr31                 28774373 1 -  39895921 A
i canFam3.chr31                C 0 I 354
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I
e otoGar3.GL873528              20735553 336 +  38779656 I
e dasNov3.JH568778               6665957 347 +   6883506 I
e cebCap1.NW_016107322v1         7644624 368 +  14377064 I
e saiBol1.JH378168              10916241 355 -  13128814 I

a score=1569177.000000
s hg38.chr14_GL000009v2_random    156584 287 +    201709 tatttatttatttacttttgagatggagtcttgttctgtcaccaggctggagtgcagtggtgcgatctctgctcactgcaacctct---------gtgtcctgggttcaagtgattctcttgcctcagcctactgagtagctgggactacaggct-tgtgccaccacacccagctaatttttgtatttttagtagagatggggtttcaccgtgttagccaggatgatctcgatctcctgaatctgtgatccgcccgccttggcctcccaaagtgctgggattacaggcatgagccac
s panTro5.chr9                  41846551 287 + 116767853 tatttatttatttatttttgagatggagtcttgttctgccaccaggctggagtgcagtggtgtgatctcggctcactgcaacctcc---------gcgtcctgggttcaagcgattctcctctctcagcctactgagtagctgggactacaggtg-tgtgccaccacacccagctaatttttgtatttttagtagagatggggtttcaccgtgttagccaggatgatctcgatctcctgaccttgtgatccgcccgccttggcctcccaaagtgctgagattacaggcatgagccac
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808028 287 + 205426864 tgtttgtttgtttgtttttgagatggtgtcctgttctgccaccaggctggagtgcagtggtgccatctcggctcactgtaacctcc---------gcatcttgggttcaagcgattctcctgcctcagcctcctgagtagctggtactacaggcc-tgtgccaccacacccagctaatttttgtatttttagtagagatggggattcaccgtgttagccaggatgatctctatctcctgaccttgtgatccgcccgcctcggactcccaaagtgctgggattacaggcgtgagccac
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217344 287 +    245036 tatttgtttgtttgtttttgagatggtgtcttgttctgccaccaggctggagtgcagtggtgccatctcggctcacagtaacctcc---------gcatcttgggttcaagcgattctcctgccttagcctcctgagtagctgggtctacaggcc-tgtgccaccacacccagctaatttttgtatttttagtagacatggggattcaccgtgttagccaggatgatctctatctcctgaccttgtgatccgcccaccttggcctcccaaagtgctgggattacaggcgtgagccac
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093586 284 -  86207423 tatttatttatttatttttgagatggaatcttgttctgccaccaggctggagtgcagtggtgcaatctcagctcactgcaacctcc---------gcgtcttgggttcaagcgattctcctgcctcagccttctgagtagctgggactataggcg-c-cgccaccacacccagctaatttttgtatttttagtagagat-gggtttcaccgtgttagccaggatggtctcgatctcctgatcttgtgatccgcccgcctcggcctcccaaggtgctgggattacaggcgtaagcca-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250534 287 - 204787373 tatttatttatttatttatgaaatggagtcttgttctgacgccaggctggagtgcagtggtgggatctcggctcactgcaacctcc---------gcgtcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggca-tgtgccaccacactcagctaatttttgtatttttagtagagatggggttttaccatgtcagccaggatggtcttgatctcctgacctcgtgatccgcccaccttggcctcccaaagtgctgggattacaggcctgagccac
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    149749 287 - 192460366 tatttatttatttatttatgaaatggagtcttgttctgccgccaggctggagtgcagtggtgggatctcggctcactgcaacctcc---------gcgtcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggca-tgtgccaccacactcagctaatttttgtatttttagtagagatggggttttaccatgtcagccaggatggtcttgatctcctgacctcgtgatccacccgccttggcctcccaaagtgctgggattacaggcctgagccac
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169250 287 -  11645122 tatttatttatttatttatgaaatggagtcttgttctgccgccaggctggagtgcagtggtgggatctcggctcactgcaacctcc---------gcgtcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggca-tgtgccaccacactcagctaatttttgtatttttagtagagatggggttttaccatgtcagccaggatggtcttgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcctgagccac
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154557 288 -   6739814 tatttatttatttatttatgagatggagtcttgttctgccgccaggctggagtgcagtggagggatctcggctcactgcaacctcc---------acgtcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggtgccccgccaccacactcagctaatttttgtatttttagtagagatggggcttcaccatgttagccaggatggtctcgatctcctgacctcgtgatctgcccacctcggcctcccaaagtgctgggattacaggcgtgagccac
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44088 287 - 101219884 tatttgtttatttatttatgagatggagtcttgttctgccgccaggctggagtgctgtggtgggatctcggctcactgcaacctcc---------gcgtcctgggttcaagcgattctcctgcctcagcctcctgagtagctgagactacaggca-tgcaccactacactcagctaatttttgtatttttagtagagatggggtttcaccatgttagccaggatggtctcgatctcctgacctcgggatctgcacgcctcggcctcccaaagtgctgggattacaggcctgagccac
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          166704 287 -    785044 tatttatttatttatttatgagatggagtcttgttctgccgccaggctggagtgcagtggtgggatctcggctcactgcaacctcc---------acatcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggca-tgcgccaccacactcagctaatttttgtatttttagtagagatggggttttaccatgttagccaggatggtctcgatctcctgacctcgtgatctgcccacctcggcctcccaaagtgctgggattacaggcgtgagccac
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55564 296 -  10971483 tatttatttatttatttatgagatggagtcttgttctgccaccaggctggagtgctgtggtgggatctcggctcactacaacctcctgggttcaagcgtcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcg-cccgccaccacacccagcgaatttttgtatttttagtagagatggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtaagccac
i colAng1.NW_012123820v1       C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I
e canFam3.chr31                 28774374 354 -  39895921 I
e otoGar3.GL873528              20735553 336 +  38779656 I
e dasNov3.JH568778               6665957 347 +   6883506 I
e cebCap1.NW_016107322v1         7644624 368 +  14377064 I
e saiBol1.JH378168              10916241 355 -  13128814 I

a score=40440.000000
s hg38.chr14_GL000009v2_random    156871 12 +    201709 cgtgAGTGACCC
s panTro5.chr9                  41846838 12 + 116767853 cgtgcgtggccT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808315 12 + 205426864 cgcgcgcggccT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217631 10 +    245036 c--gcgcggccT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093870 12 -  86207423 cgtgcctggccT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250821 12 - 204787373 cgcgcttggccT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150036 12 - 192460366 cgcgcttggccT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169537 12 -  11645122 cgcgcttggccT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154845 12 -   6739814 catgcatggccT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44375 12 - 101219884 cacgcttggccT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          166991 12 -    785044 catgcatggccT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55860 12 -  10971483 tgcgcctggccT
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20735889 12 +  38779656 catttacaaaat
i otoGar3.GL873528             I 336 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e aotNan1.NW_018487195v1         4108220 790 -   9889416 I
e canFam3.chr31                 28774374 354 -  39895921 I
e dasNov3.JH568778               6665957 347 +   6883506 I
e cebCap1.NW_016107322v1         7644624 368 +  14377064 I
e saiBol1.JH378168              10916241 355 -  13128814 I

a score=111813.000000
s hg38.chr14_GL000009v2_random    156883 12 +    201709 TGCTTTGTAAGT-----
s panTro5.chr9                  41846850 12 + 116767853 TGCTTTGTAATT-----
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808327 12 + 205426864 TCCTTTGTAATT-----
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217641 12 +    245036 TGCTTTGTAATT-----
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093882 12 -  86207423 TGTTTTGTAATT-----
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250833 12 - 204787373 TGCTTTGTAATT-----
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150048 12 - 192460366 TGCTTTGTAATT-----
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169549 12 -  11645122 TGCTTTGTAATT-----
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154857 12 -   6739814 TGCTTTGTAATT-----
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44387 12 - 101219884 TGCTTTGTAATT-----
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167003 12 -    785044 TGCTTTGTAATT-----
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55872 12 -  10971483 TGCTTTGTAATT-----
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10916596 12 -  13128814 TGCCTTGTAATT-----
i saiBol1.JH378168             I 355 C 0
s cebCap1.NW_016107322v1         7644992 12 +  14377064 tgccttgtaatt-----
i cebCap1.NW_016107322v1       I 368 C 0
s aotNan1.NW_018487195v1         4109010 12 -   9889416 tgccttgtaatt-----
i aotNan1.NW_018487195v1       I 790 C 0
s otoGar3.GL873528              20735901 17 +  38779656 tgccttgtaattgtttg
i otoGar3.GL873528             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I
e canFam3.chr31                 28774374 354 -  39895921 I
e dasNov3.JH568778               6665957 347 +   6883506 I

a score=641401.000000
s hg38.chr14_GL000009v2_random    156895 60 +    201709 TTTACATCATATATCCCCTGTGTTAGACCAAGAGCTTGTAAAAGCCAGAAGACATACACC
s panTro5.chr9                  41846862 60 + 116767853 TTTACATCATATATCCCCTGTGTTAGACCAAGAGCTTGTAAAAGCCAGAAGACATACACC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808339 60 + 205426864 TTTACATCATATATCCCCTGTGTTAGACCAAAAGCTTGTAAAAGACAGAAGACATACACC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217653 60 +    245036 TTTACATCATATATCCCCTGTGTTAGACCAAAAGCTTGTAAAAGACAGAAGACATACACC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093894 60 -  86207423 TTTACATCATATATCCCCTGCGTTAGACCAAGAGCTTGTAAAAGCCAGAAGACATACACC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250845 60 - 204787373 TTTACATCATATATCCCCTGTGTTAGACCAAGAGCTTGTAAAAGCCAGAAGACACACACT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150060 60 - 192460366 TTTACATCATATATCCCCTGTGTTAGACCAAGAGCTTGTAAAAGCCAGAAGACACACACT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169561 60 -  11645122 TTTACATCATATATCCCCTGTGTTAGACCAAGAGCTTGTAAAAGCCAGAAGATACACACT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154869 60 -   6739814 TTTACATCATATATCCCCTGTGTTAGACCAAGAGCTTGTAAAAGCCAGAAGACACACATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44399 60 - 101219884 TTTACATCCTATATCCCCTGTGTTAGACCAAGAGCTTGTAAAAGCCAGAAGACACACACT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167015 60 -    785044 TTTACATCATATATCCCCTGTGTTAGACCAAGAGCTTGTAAAAGCCAGAAGACACACATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55884 60 -  10971483 TGTATGTCATATATCCCCTGTGTTAGACCAAGAGCTTGTAAAAGCCAGAAGACATACACT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10916608 59 -  13128814 TTTACATCATATATTTGCTATTTTAGA-CAAGAGCTCGTAAAAGCCAGAAGACAGATACT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645004 59 +  14377064 tttacatcataaatttcctattttaga-caagagcttgtaaaagccagaagacagatact
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109022 59 -   9889416 tttacatcatatatttcctattttaga-caagagcttgtaaaagtcagaagacagatact
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20735918 59 +  38779656 ttgacatcatttatctcctgtattaaaccaacagttcttcaaagcca-aggacatgccct
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28774728 60 -  39895921 ttcacatcacctatctcctgtattagaccaagagcccttcgaagtcagaagttataaact
i canFam3.chr31                I 354 C 0
s dasNov3.JH568778               6666304 60 +   6883506 tttacatcatctatttcctgcattagaccaagaactcttcaaagccagaggacatgtcct
i dasNov3.JH568778             I 347 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I

a score=1109457.000000
s hg38.chr14_GL000009v2_random    156955 95 +    201709 ATTTATAGTTCAATTAGAGATGTTCACTGATAAAACTGATTCTTCCATCTGAGGGTGGTATTTGTAGTTACAGTAATGTAGATGACAATCTAAGT---
s panTro5.chr9                  41846922 95 + 116767853 ATTTATAGTTCAATTAGAGATGTTCACTGATAAAACTGATTCTTCCATCTGAGGGTGGTATTTGTAGTTACAGTAATGTAGACGACAATCTAAGT---
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808399 95 + 205426864 ATTTATAGTTCAATTAGAGATGTTTACTGATAAAACTGATTCTTCGATCTGAGGATGGCATTTGTAGTTACAGTAATGTAGATGACAATCTAAGT---
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217713 95 +    245036 ATTTATAGTTCAATTAGAGATGTTTACTGATAAAACTGATTCTTAGATCTGAGGGTGGCATTTGTAGTTACAGTAATGTAGATGACAATCTAAGT---
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42093954 95 -  86207423 ATTTGTAGTTCTATTAGAGATGTTTACTGATAAAACTGATTCTTCAATCTGAGGGTGGTATTTGTAGTTACTGTAATGTAGATGACAATCTAAGT---
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204250905 95 - 204787373 ATGTATAGTTCAATTAGAGATGTTTACTGATAAAACTGATTCTTCAATCTGAGGGTGGCATTTGTAGTTACAGTAATGTAGATGACAATCTAAGT---
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150120 95 - 192460366 ATGTATAGTTCAATTAGAGATGTTTACTGATAAAACTGATTCTTCAATCTGAGGGTGGCATTTGTAGTTACAGTAATGTAGATGACAATCTAAGT---
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169621 95 -  11645122 ATGTATAGTTCAATTAGAGATGTTTACTGATAAAACTGATTCTTCAATCTGAGGGTGGCATTTGTAGTTACAGTAATGTAGATGACAATCTAAGT---
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          154929 95 -   6739814 ATGTATAGTTCAATTAGAGATGTTTACTGATAAAACTGATTCTTCAATCTGAGGGTGGCATTTGTAGTTACAGTAATGTAGATGACAATCTAAGT---
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44459 95 - 101219884 ATATATAGTTCAATGAGAGATGTTTGCTGATAAAAGTGATTCTTCAATCTGAGGGTGGCATTTGTAGTTACAGCAATGCAGATGACAATCTAAGT---
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167075 95 -    785044 ATGTATAGTTCAATTAGAGATGTTTACTGATAAAACTGATTCTTCAATCTGAGGGTGGCATTTGTAGTTACAGTAATGTAGATGACAATCTAAGT---
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           55944 95 -  10971483 ATGTGTAGTTCAATTAGAGTTGTTTACTGATAAAACTGATTCTTCAATCTGAGGGTAGCATTTGTAGTTACAGTAATGTAGATGACAATCTAAGT---
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10916667 95 -  13128814 ATTTATAGTTCAATTAGAGATGTTTACTGATAAAACAGATTCTTCAATCTGAGGGTGGCATTTGTAGTTATGGTAATGTAGATGACAATCTAAGT---
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645063 94 +  14377064 atttatAGTTCAATTAGAGATGTTTACTGATAAAACGGATTCTTCAATCTGA-GGTGGCATTTGTAGTTATGGTAATGTAGATGACAATCTAAGT---
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109081 95 -   9889416 atttatAGTTCAATTAGAGATGTTTACTGATAAAACGGATTCTTCAATCTGAGGGTGTCATTTGTAGTTACGGTAATGTAGATGACAATCTAAGT---
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30852599 94 -  47401472 atttattgttCCATTAGAGATGTTCATTG-CTTAACTGATTCTTCAATCTGAGGGTAACATTTGTAGCTCCAGTAATATAAATGACAACTTAAGT---
i micMur3.chr31                N 0 C 0
s otoGar3.GL873528              20735977 94 +  38779656 atttattgttCCATTAGAGGTGTTCACTA-CATAAATGATTCTTCAAACTGAGAGTGACATTTGCAGCTCTAGTAATATAAATGACAACTTAAGT---
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28774788 89 -  39895921 attcatctttCCATTAGTGATGTTTACTGAT-TAACTGACTCTTCAATCTGGGAGTGACATTCACAGTTCCAGTAGTATAGATGA-ATTAT-------
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6666364 86 +   6883506 atttatcattCCATTAGCGAGGTTTACTGA--------ATCTGTCAAAT--GGGGTGACATTCG--ACAACAGTAATAGAAACAAGAACCTAAGTAAT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           58604 2501 +   1229009 I

a score=27432.000000
s hg38.chr14_GL000009v2_random    157050 2 +    201709 TA
s panTro5.chr9                  41847017 2 + 116767853 TA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808494 2 + 205426864 TA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217808 2 +    245036 TA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094049 2 -  86207423 TA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251000 2 - 204787373 TA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150215 2 - 192460366 TA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169716 2 -  11645122 TA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155024 2 -   6739814 TA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44554 2 - 101219884 GA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167170 2 -    785044 TA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56039 2 -  10971483 TA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10916762 2 -  13128814 TA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645157 2 +  14377064 TA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109176 2 -   9889416 TA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30852693 2 -  47401472 TA
i micMur3.chr31                C 0 I 3
s eulFla1.LGHW01000695v1           61105 2 +   1229009 TA
i eulFla1.LGHW01000695v1       I 2501 I 63
s canFam3.chr31                 28774877 2 -  39895921 TA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6666450 2 +   6883506 TA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e otoGar3.GL873528              20736071 0 +  38779656 C

a score=473562.000000
s hg38.chr14_GL000009v2_random    157052 41 +    201709 TGTTCTATAAACTGTGTCACTGACATCTCAATCTACAGCTA
s panTro5.chr9                  41847019 41 + 116767853 TGTTCTATAAACTGTGTCACTGACACCTCAATCTACAGCTG
i panTro5.chr9                 C 0 I 326
s panPan2.chr3                  77808496 41 + 205426864 TGTTCAATAAACTGTGTCACTGATATCTCAATCTACAGCTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217810 41 +    245036 TGTTCAATAAACTGTGTCACTGACATCTAAATCTACAGCTA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094051 41 -  86207423 TGTTCTATAAACTGTGTCACTGACATCTCAATCTACAGCTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251002 41 - 204787373 TGTTCTATAAACTGTGTCACTGACATCTCAATCTACAGCTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150217 41 - 192460366 TGTTCTATAAACTGTGTCACTGACATCTCAATCTACAGCTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169718 41 -  11645122 TGTTCTATAAACTGTGTCACTGACATCTCAATCTACAGCTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155026 41 -   6739814 TGTTCTATAAACTGTGTCACTGACATCTCAATCTACAGCTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44556 41 - 101219884 TGTTCTATAAACTGTGTCACTGACATCTCAATCTACAGCTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167172 41 -    785044 TGTTCTATAAACTGTGTCACTGACATCTCAATCTACAGCTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56041 41 -  10971483 TGTTCTATAAACTGTGTCACTGACATCTCAATCTACAGCTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10916764 41 -  13128814 TGTTGTATAAACTCTGTCACTGATATCTCAATCTACAGCTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645159 41 +  14377064 TGTTGTATAAACTCTGTCACTGATCTCTCAATCTACAGCTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109178 41 -   9889416 TGTTGTATAAACTCTGTCACTGATATCTCAATCTACAGCTA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30852698 41 -  47401472 TGTTCTATAAAGTATGCCCCTAACATCTCAATCTACAACTA
i micMur3.chr31                I 3 C 0
s otoGar3.GL873528              20736071 27 +  38779656 -------------GTG-CCCTGACATCCCAACCTACAACTA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28774879 41 -  39895921 AGTTCTATGATGTGCACCACATATACCTCAATTTGTAGTGA
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6666452 38 +   6883506 AGTTCTATGATCAGTGCCACAGACAT---AGTCTACAGCTA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           61107 63 +   1229009 I

a score=246575.000000
s hg38.chr14_GL000009v2_random    157093 19 +    201709 ACTTTA---------ATTTTTTAAAAGC
s panTro5.chr9                  41847386 19 + 116767853 ACTTTA---------TTTTTTTAAAAGC
i panTro5.chr9                 I 326 C 0
s panPan2.chr3                  77808537 19 + 205426864 ACTTTA---------ATTTTTGAAAAGC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217851 19 +    245036 AATTTA---------ATTTTTTAAAAGC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094092 19 -  86207423 ACTTTA---------ATTTTTTAAAAGC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251043 19 - 204787373 ACTTTA---------ATTTTTTAAAAGC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150258 19 - 192460366 ACTTTA---------ATTTTTTAAAAGC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169759 19 -  11645122 ACTTTA---------ATTTTTTAAAAGC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155067 19 -   6739814 ACTTTA---------ATTTTTTAAAAGC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44597 19 - 101219884 ACTTTA---------ATTTTTTAAAAGC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167213 19 -    785044 ACTTTA---------ATTTTTTAAAAGC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56082 19 -  10971483 ACTTTA---------ATTTTTTAAAAGC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10916805 19 -  13128814 ACTTTA---------ATTTTTTAAAAGC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645200 19 +  14377064 ACTTTA---------ATTTTTTAAAAGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109219 19 -   9889416 ACTTTA---------ATTTTTTAAAAGC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30852739 19 -  47401472 ACTTTA---------TTTTTTTTAAAGC
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20736098 28 +  38779656 ACTTTAGTTCCTTTTTTTTTTTTTTAGC
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28774921 19 -  39895921 ACTTAA---------CTTTTTTAAAAGC
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6666490 19 +   6883506 ACTCTA---------ATTTTTTAAAAGC
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           61107 63 +   1229009 I

a score=15561.000000
s hg38.chr14_GL000009v2_random    157112 1 +    201709 A
s panTro5.chr9                  41847405 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808556 1 + 205426864 A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217870 1 +    245036 A
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094111 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251062 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150277 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169778 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155086 1 -   6739814 A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44616 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167232 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56101 1 -  10971483 A
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10916824 1 -  13128814 A
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645219 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109238 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30852758 1 -  47401472 A
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           61170 1 +   1229009 a
i eulFla1.LGHW01000695v1       I 63 I 51
s otoGar3.GL873528              20736126 1 +  38779656 A
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28774940 1 -  39895921 A
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e dasNov3.JH568778               6666509 0 +   6883506 C

a score=588122.000000
s hg38.chr14_GL000009v2_random    157113 48 +    201709 GAGGAGTGGGTTGTATAGGTATAGAAATACATCCATCAAGCTAGTTAA
s panTro5.chr9                  41847406 48 + 116767853 GAGGAGTGGGTTGTATAGGTTTAGAAATACATCCATCAAGCTAGTTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808557 48 + 205426864 GAGGAGTGGGTTGTATAGGTTTAGAAATACATCCATTAAGCTAGTTAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217871 48 +    245036 GAGGAGTGGGTTGTATAGGTTTAGAAATACATCCATTAAGCTAGTTAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094112 48 -  86207423 GAGGAGTGGGTCATATAGGTTTAGAAATACATCCATCAAGCTAGTTAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251063 48 - 204787373 GAGGAGTGGGTTGTATAGGTTTAGAAATACATCCATTAAGCTCATTAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150278 48 - 192460366 GAGGAGTGGGTTGTATAGGTTTAGAAATACATCCATTAAGCTCATTAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169779 48 -  11645122 GAGGAGTGGGTTGTATAGGTTTAGAAATACATCCATTAAGCTCATTAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155087 48 -   6739814 GAGGAGTGGGTTGTATAGGTTTAGAAATACATCCATTAAGCTCATTAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44617 48 - 101219884 GAGGAGTGGGTTGTATAGGTTTAGAAATACATCCTTTAAGCTCATTAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167233 48 -    785044 GAGGAGTGGGTTGTATAGGTTTAGAAATACATCCATTAAGCTCATTAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56102 48 -  10971483 GAGAAGTGGGTTTTATAGGTTTAGAAACACATCCATTAAGCTCATTAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10916825 48 -  13128814 GAGAAGTGGGTTATATATGTTTAGAAATACATCCATTAAACTAGTTAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645220 48 +  14377064 GAGAAGTGGGTTATATATGTTTAGAAATACATCCATTAAACTAGTTAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109239 48 -   9889416 GAGAAGTGGGTTATATATGTTTAGAAATACATCCATTAAACTAGTTAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30852759 48 -  47401472 GAGAAGTGGGTTGTATATGTTTAGAAATACATCCACTAAACTAGTTAA
i micMur3.chr31                C 0 I 3
s otoGar3.GL873528              20736127 48 +  38779656 GAGAAGTGGCTTGTACATGTTTAAGAATACATCCATTAGAATAGTTAA
i otoGar3.GL873528             C 0 I 3
s canFam3.chr31                 28774941 47 -  39895921 GAGAAGTGGGTTGTATATAT-TGGAAATTTATATATTAAGTTAGTTAA
i canFam3.chr31                C 0 I 3
s dasNov3.JH568778               6666509 47 +   6883506 TCTAAGTGAGTTGTGTGTGT-TAGAAATATATCTTTTAAATTAGTTTA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           61171 51 +   1229009 I

a score=527088.000000
s hg38.chr14_GL000009v2_random    157161 47 +    201709 ---GTGAGATGGATTCAAGCCTTCAACTCACTGGAATA-TTTAC-CAAATTG--
s panTro5.chr9                  41847454 47 + 116767853 ---GTGAGATGGATTCAAACCTTCAACTCACTGGAATA-TTTAC-CAAATTG--
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808605 47 + 205426864 ---GTGATGTAGATTCAAACCTGCAACTCACTGGAATA-TTTAC-CAAATTA--
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217919 47 +    245036 ---GTGATATAGATTCAAACCTTCAACTCACTGGAATA-TTTAC-CAAATTA--
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094160 47 -  86207423 ---GTGAGATGGATTCAAAGCTTCAACTCACTGGAATA-TTTAC-CAAATTG--
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251111 47 - 204787373 ---GTGAGGTAAATTCAAACCTTCACCTCATTGGAATA-TTTAA-CAAACTG--
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150326 47 - 192460366 ---GTGAGGTAAATTCAAACCTTCACCTCATTGGAATA-TTTAC-CAAACTG--
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169827 47 -  11645122 ---GTGAGGTAAATTCAAACCTTCACCTCATTGGAATA-TTTAC-CAAACTG--
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155135 47 -   6739814 ---GTGAGGTAAATTCAAACCTTCACCTCACTGGAATA-TTTAC-CAAACTG--
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44665 47 - 101219884 ---GTGAGGTAAATTCAAACCTTCACCTCACTGGAATA-TTTAC-CACACTG--
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167281 47 -    785044 ---GTGAGGTAAATTCAAACCTTCACCTCATTGGAATA-TTTAC-CAAACTG--
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56150 47 -  10971483 ---GTGAGGTAAATTCAAACCTTCACCTCACTGGAATA-TTTAC-CAAACTG--
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10916873 49 -  13128814 ---GTGAGTTAGATTTAAACCTTCAACTCACTGGAATATTTTACTCAAGTTG--
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645268 49 +  14377064 ---GTGAGTTAGATTCAAACCTTCAACTCACTGGAATATTTTACTCAAGTTG--
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109287 48 -   9889416 ---GTGAGTTAGATTCAAACCTTCAACTCACTGGAATA-TTTACTCAAGTTG--
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30852810 48 -  47401472 ---ATGAGATGAATTTAAACCGTTAGCTCACTGGAATA-TATACCTAAATTG--
i micMur3.chr31                I 3 I 81
s eulFla1.LGHW01000695v1           61222 48 +   1229009 ---atgagatgaatttaaacctttaggtcactggaata-tctacttaaatta--
i eulFla1.LGHW01000695v1       I 51 I 1
s otoGar3.GL873528              20736178 48 +  38779656 ---ATGACATGGATTTAAATCTTCAACTCACTGGAATA-TCTACCTGAATTG--
i otoGar3.GL873528             I 3 I 1
s canFam3.chr31                 28774991 46 -  39895921 ---GTGAGATGGGTTTACAT-TCCAGCTCCCTGGAACA-CCTAT-CTAATCA--
i canFam3.chr31                I 3 I 2
s dasNov3.JH568778               6666556 52 +   6883506 ATGATGAATTGATTTTAAACCTTCAGCTCCTTGGAACA-GCTAC-TTAATCAGA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I

a score=553197.000000
s hg38.chr14_GL000009v2_random    157208 50 +    201709 ACTATTCATTAGCTAAA-AGAGCCATATAAACAAGGTACTTTTTAAAATTC
s panTro5.chr9                  41847501 50 + 116767853 ACTATTCATTAGCTAAA-GAAGCCATATAAACAAGGTACTTTTTAAAATTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808652 50 + 205426864 ACTATTCATTATCTAAA-GGAGCCATATAAACAAGGTACTTTTTAAAATTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          217966 50 +    245036 ACTATTCATTATCTAAA-GGAGCCATATAAACAAGGTACTTTTTAAAATTC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094207 50 -  86207423 ACGATTCATTCTCTAAA-GGAGCCATATAAACAAGGTACTTTCTAAAATTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251158 50 - 204787373 ACTATTCATTATCTAAA-GGAGCCATACCAACGAGGTACTTTTTAAAATTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150373 50 - 192460366 ACTATTCATTATCTAAA-GGAGCCATACCAACGAGGTACTTTTTAAAATTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169874 50 -  11645122 ACTATTCATTATCTAAA-GGAGCCATACCAACGAGGTACTTTTTAAAATTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155182 51 -   6739814 ACTATTCATTATCTAAAGGGAGCCATACAAACGAGGTACTTTTTAAAATTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44712 51 - 101219884 ACTATTCATTATCTAAAGGGAGCCATACAAACGAGGTACTTTTTAAAATTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167328 51 -    785044 ACTATTCATTATCTAAAGGGAGCCATACAAACGACGTACTTTTTAAAATTC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56197 50 -  10971483 ACTATTCGTTATCTAAA-GGAGTCATACAAATGAGGTACTTTTTAAAATTC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10916922 50 -  13128814 GCTATTGATTATCTAAA-GGTGCCATATAAGCAAGTTACTTTTTAAAATTC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645317 50 +  14377064 GCTATTCATTATCTAAA-GGTGCCATATAAGAAAGGTACTTTTTAAAATTC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109335 50 -   9889416 ACTATTCATTATCTAAA-GGTGCCATATAAGCAAGGTACTTTTTAAAATTC
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           61271 50 +   1229009 acttttcattatccaaa-ggtgccgtatgaatgaggtatATTTTTTAATCC
i eulFla1.LGHW01000695v1       I 1 I 33
s otoGar3.GL873528              20736227 49 +  38779656 ACTATTCATTATCCAAA-GGGGCCATTTGAACAAAGTATATATTTTAATC-
i otoGar3.GL873528             I 1 C 0
s canFam3.chr31                 28775039 50 -  39895921 ACAATTCATTATCTAAA-ATTGCCATATAAGCAAGATTTTTTTTAAAAAGA
i canFam3.chr31                I 2 I 5
s dasNov3.JH568778               6666608 50 +   6883506 ACTACTCATTATCCAAA-GGAGACACGGAAGCAAGGTATTTAAAAAAATTC
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30852858 81 -  47401472 I
e nasLar1.chr2                    129764 3121 + 181502896 I

a score=304919.000000
s hg38.chr14_GL000009v2_random    157258 33 +    201709 AAAATTATG-TAAGGTTTTATTTCCTTTTTATGT
s panTro5.chr9                  41847551 33 + 116767853 AAAATTATG-TAACGTTTTATTTCCTCTTTATGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808702 33 + 205426864 AAAATTATG-TAAGGTTTTATTTCCTTTTCATAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218016 32 +    245036 AAAATTATG-TAAGG-TTTATTTCCTTTTTATAC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094257 33 -  86207423 AAAATTATG-TAAGGTTTTATTTCCTTTTTATGT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251208 33 - 204787373 AAAACTATG-TAAGGTTTTATTTCCTTTTTATAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150423 33 - 192460366 AAAACTATG-TAAGGTTTTATTTCCTTTTTATAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169924 33 -  11645122 AAAACTATG-TAAGGTTTTATTTCCTTTTTATAC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155233 33 -   6739814 AAAACTATG-TAAGGTTTTATTTCCTTTTTGTAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44763 33 - 101219884 AAAACTATG-TAAGGTTTTATTTCCTTTTTATAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167379 33 -    785044 AAAACTATG-TAAGGTTTTATTTCCTTTTTATAC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56247 33 -  10971483 AAAACTATG-TAAGGTTTTATTTCCTTGTTATAC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10916972 33 -  13128814 AAAACTATA-TAAGGTTTCATTTCCTTTTTATGC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645367 33 +  14377064 AAAACTATA-TAAGGTTTCATTTCCTTTTTATGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109385 33 -   9889416 AAAACTGTA-TAAGGTTTCATTTCCTTTTTATGC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20736276 29 +  38779656 -AGATTATA-TAAGGTTTTATTTCCTTTTCC---
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775094 34 -  39895921 CAAATGACATTGAGGTTTTATATCTTTTTAATCC
i canFam3.chr31                I 5 C 0
s dasNov3.JH568778               6666658 18 +   6883506 AAAACTACATTAAGGTGC----------------
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30852858 81 -  47401472 I
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           61321 33 +   1229009 I

a score=47836.000000
s hg38.chr14_GL000009v2_random    157291 4 +    201709 TGTT
s panTro5.chr9                  41847584 4 + 116767853 TGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808735 4 + 205426864 TGTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218048 4 +    245036 TGTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094290 4 -  86207423 TGTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251241 4 - 204787373 TGTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150456 4 - 192460366 TGTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169957 4 -  11645122 TGTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155266 4 -   6739814 TGCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44796 4 - 101219884 TGTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167412 4 -    785044 TGCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56280 4 -  10971483 TGTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917005 4 -  13128814 TGTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645400 4 +  14377064 TGTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109418 4 -   9889416 TGTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30852939 4 -  47401472 TGCT
i micMur3.chr31                I 81 C 0
s otoGar3.GL873528              20736305 4 +  38779656 TGAT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775128 4 -  39895921 TATC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6666676 4 +   6883506 TATT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           61321 33 +   1229009 I

a score=719518.000000
s hg38.chr14_GL000009v2_random    157295 65 +    201709 ATGAATTGGATTGTA--GAGGTTATAAGGTAAA--AT-AAGATTAC--TTTTA-CAGTAAAACATACAACATA
s panTro5.chr9                  41847588 65 + 116767853 ATGAATTGGATTGTA--GAGGTTATAAGGTAAA--AT-AAGATTAC--TTTCA-CAGTAAAACATACAACACA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808739 60 + 205426864 ATGAATTGGATTGTA--GAGGTTATAAGGTAAA--------ATTAC--TTTTA-CGGTAAAACATACAACACA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218052 65 +    245036 ATGAATTGGATTGTA--GAGGTTATAAGGTAAA--AT-AAAATTAT--TTTTA-CGGTAAAACATACAACACA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094294 65 -  86207423 ATGAATTGGATTGTA--GAGGTTATAAGGTGAA--AG-AAGATTAC--TTTTA-CAGTAAAACATACAACACA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251245 65 - 204787373 ATGAATTGGATTGTA--GAGGTTATAAGGTAAA--AT-AAGATTAC--TTTTA-CAGTAAAATATACAACACA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150460 65 - 192460366 ATGAATTGGATTGTA--GAGGTTATAAGGTAAA--AT-AAGATTAC--TTTTA-CAGTAAAATATACAACACA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          169961 65 -  11645122 ATGAATTGGATTGTA--GAGGTTATAAGGTAAA--AT-AAGATTAC--TTTTA-CAGTAAAATATACAACACA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155270 65 -   6739814 ATGAATTGGATTGTA--GAGGTTATAAGGTAAA--AT-AAGATTAC--TTTTA-CAGTAAAATATACAACACA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44800 65 - 101219884 ATGAATTGGATTGTA--GAGGTTATAAGGTAAA--AT-AAGATTAC--TTTTA-CCGTAAAATATACAACACA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167416 65 -    785044 ATGAATTGGATTGTA--GAGGTTATAAGGTAAA--AT-AAGATTAC--TTTTA-CAGTAAAATATACAACACA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56284 65 -  10971483 ATGAATTGGATTGTA--GAGGTTATAAGGTAAA--AT-AAGATTAC--TTTTA-CAGTAAAATATACAACATG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917009 67 -  13128814 ATGAGTTGGACTGTA--GGAGTTATAAGGTAAAAAAC-AATATTAC--TTTTA-CAGTAAAACATGCAACGCA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645404 66 +  14377064 ATGAGTTGGACTGTA--GGAGTTATAAGGTAAAAAAC-AAGATTAC--TTTTA-CAGTAAAACATACAACAC-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109422 67 -   9889416 ATGAGTTGGACTGTA--GGGGTTATAAGGTAAAAAAC-AAGATTAC--TTTTA-CAGTAAAGCATACAACACA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30852943 66 -  47401472 ATGAGTTGGATTGCA--GAGGGTGTATGGTAAA--ATAAAGATCAC--TTTTACCAAT-AAAAATACAACATA
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           61354 65 +   1229009 ATGAGTTGTATTGCA--GAGGGTATATGGCAAA--ATAAAGATCAC--TTTTAGCAAT--AAAATACAACATG
i eulFla1.LGHW01000695v1       I 33 I 845
s otoGar3.GL873528              20736309 58 +  38779656 ACAAGTTGGATTCTA--GAGGGTGTATAGTAAA-----------AC--TTTTACCCATAAAAAATACAACATA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775132 59 -  39895921 GTGAATTGGATTTTAGTGGGGGTATAAGGTCAA--GT------------TTTACTAGTAAAACATACAACACA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6666680 64 +   6883506 ATGAGTTGGATC-TA--GAATGTACCAGACG----AT-AAGGTCACATTTTAA-CAGTAAAATATGCAACACA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I

a score=1605701.000000
s hg38.chr14_GL000009v2_random    157360 131 +    201709 TTGTCACAAGAGGGCAGCCTTTGAACACGAATTGCTTCTC-------AGACATTCCTTGAAATTTTGAGACAGTTACTT-----AACACAACAAAATA---ATAAAACACTACAGAAGATCTAAGAAGATACTTTGACTTATGCAT
s panTro5.chr9                  41847653 136 + 116767853 TTGTCACAAGAGGGCAGCCTTTTAACATGAACTGCTTCTC-------AGGCATTCCTTGAAATTTTGAGACAGTTACTTTAATTAACACAACTAAATA---ATAAAACACTACAGAGGATCTAAGAAGATACTTTGACTTATGCAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808799 131 + 205426864 TTGTCACAAGAGGGCAGCCTTTGAACATGAATTGCTTCTC-------AGGCATTCCTTGAAATTTTGAGACAGTTACTTTAATTCACACAACTAACTA---ATAAA-----ACAGAGGATCTAAGAAGATACTTTGACTTATGCAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218117 131 +    245036 TTGTCACAAGAGGGCAGCCTTTGAACATGAATTGCTTTTC-------AGGCATTCCTTGAAATTTTGACACAGTTACTTTAATTCACACAACTAAATA---ATAAA-----ACAGAGGATCTAAGAAGATACTTTGACTTATGCAT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094359 133 -  86207423 TTGTCACAAGAGGGCAGCCTTTGAACATGAATTGCTTCTC-------AGGCA-TCCTTGAAATTTTGAG--AGTTACTTTAATTCACACAACTAAATA---ATAAAACACTACAGAGGATCTAAGAAGATAGTTTGACTTATGCAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251310 136 - 204787373 TTGTCACAAGAGGGCAGCCTTTGAACATGAATTGCTTCGC-------AGGCATTCCTTGAAATTTTGAGACAGTTACTTTAATTCACACAATTAAATA---ATAAAACACTACTGAGGATCTAAGCAGCTAGTTTGACTTATGCAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150525 136 - 192460366 TTGTCACAAGAGGGCAGCCTTTGAACATGAATTGCTTCGC-------AGGCATTCCTTGAAATTTTGAGACAGTTACTTTAATTCACACAATTAAATA---ATAAAACACTACTGAGGATCTAAGCAGCTAGTTTGACTTATGCAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170026 136 -  11645122 TTGTCACAAGAGGGCAGCCTTTGAACATGAATTGCTTCGC-------AGGCATTCCTTGAAATTTTGAGACAGTTACTTTAATTCACACAATTAAATA---ATAAAACACTACTGAGGATCTAAGCAGCTAGTTTGACTTATGCAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155335 136 -   6739814 TTGTCACAAGAGGGCAGCCTTTGAACATGAATTGCTTCTC-------AGGCATTCCTTGAAATTTTGAGACAGTTACTTTAATTCACACAACTAAATA---ATAAAACACTACTGAGGATCTAAGCAGCTACTTTGACTTATGCAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    44865 136 - 101219884 TTGTCACAAGAGGGCAGCCTTTGAACATGAATTGCTTCTC-------AGGCATTCCTTGAAAGTTTGAGACAGTTACTTTAATTCACACAACTAAATA---ATAAAACACTACTGAGGATCTAAGCAGCTACTTTGACTTATGCAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167481 136 -    785044 TTGTCACAAGAGGGCAGCCTTTGAACATGAATTGCTTCTC-------AGGCATTCCTTGAAATTTTGAGACAGTTACTTTAATTCACACAACTAAATA---ATAAAACACTACTGAGGATCTAAGCAGCTACTTTGACTTATGCAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56349 136 -  10971483 TTGTCACAAGAGGGCAGCCTTTGAACATGAATTGCTTCTC-------AGGCATTCCTTGAAATTTTGAGACAGTTACTTTAATTCACACAACTAAATA---ATAAAACACTACTGAGGATCGAAGCAGCTACTTTGACTTATGCAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917076 136 -  13128814 TTGTCACAAGAGGGCAGCCTTTTAACATGAATTGCTTCTC-------AGGCATTTCTTGAAATTTTTAGGCAGTTACTTTAATTCACACAACTAAGTA---ATAAAATCCTGCAGAGCATCTAAGCAGATACTTTGCCTTACGTGT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645470 135 +  14377064 TTGTCACAAGAGGGCAGCCTTTTAACATGAATTGCTTCTC-------Aggcatttcttgaaattttgaggcagttactttaattcacacgactaaata---ataaaatattacagagtatctaagcagATACTTTGCC-TATGTGT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109489 133 -   9889416 TTGTCACAAGAGGGCAGCCTTTTAACATGAATTGCTTCTC-------AAGCAT---TTGAAATTTTGAGTCAGTTACTTTAATTCACACAACTAAATA---ATAAAATACTACAGAGCATCTAAGCAGACACTTTGCCTTATGTGT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30853009 136 -  47401472 TTGCCACAAGAGGGCACGCTTTTAACATGAATTGCTTCTT-------AGCCATTTCTTGAAATTTTGAGGCAGTTACTGTAATCCACACAACTAAATA---ATAAAACAATACAGGACATTCAAGCAGATATTTTGCCTTATGCAT
i micMur3.chr31                C 0 I 97
s otoGar3.GL873528              20736367 139 +  38779656 TTGTCACAAGAGGGCAGCCTATTAACATGAATTTCATCTT-------AGGCATTTCTTGAAATTTTAAGGCCATTGCTTTAATCCACAAAGCCAAATAATGATAGAACAATACAGGGCATTCAAGCAGATACTTTACCTTATGTAT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775191 142 -  39895921 TTGTCACAAGAGGGCAGCCTTTTAACATGAATTGTTCTTCAACCTGTAGGCATTACTTGAAATTTTAAGACAGTTACTC-AATGTCTTTTACTAAATG---ATAAAACAATACAAAATATTCAAGCAGATATTTTAATTTATTCAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6666744 144 +   6883506 TTGTCACAAGAGGGCAGCCTTTTAACATAAATTGCTCATCTATCTGTAGTCATTTCTTAAAATTTTGTGGCAGTTA-TTTAATCTACATAACTAAATAATGATAAACAATAACAAAACATTCAGAC-GCTACTTTACCTTATGCAT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           61419 845 +   1229009 I

a score=920860.000000
s hg38.chr14_GL000009v2_random    157491 92 +    201709 ATTGTTACTTTTTTATT------ACTGCTAGTGGAAGATG-T----AATCGACAAGGAAGGTAAGGGCTGAATTTGTTTTATGTAAAAAGACAAATTTCTTTG
s panTro5.chr9                  41847789 92 + 116767853 ATTGTTACTTTTTTATT------ACTGCTAGTGGAAGATG-T----AATTGATAAGGAAGGTAAGGGCTGAATTTGTTTTATGTAAAAAGACAAATTTCTTTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77808930 92 + 205426864 ATTGTTACTTTTTTATT------ACTGCTAGTGGAAGATG-T----AATCTATAAGGAAGGCAAGGGCTGAATTTGTTTTATGTAAAAAGACAAATTTCTTTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218248 92 +    245036 ATTGTTACTTTTTTATT------ACTGCTAGTGGAAGATG-T----AATCTATAAGGAAGGCAAGGGCTGAATTTGTTTTATGTAAAAAGACAAATTTCTTTG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094492 92 -  86207423 ATTGTTACTTTTTTATT------ACTGCTGGTGGAAGATG-T----AATCTATAAGGAAGGCAAGGGCTGAATTTGTTTTATGTAAAAAGACAAATTTCTTTG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251446 92 - 204787373 CTTGTTACTTTTTTATT------ACTGCTAATGGAAAACA-T----AATCTATAAGGAAGGCAAGGGCTGAATTTGTTTTAGGTAAAAAGATAAATTTCTTTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150661 92 - 192460366 CTTGTTACTTTTTTATT------ACTGCTAATGGAAAACA-T----AATCTATAAGGAAGGCAAGGGCTGAATTTGTTTTAGGTAAAAAGATAAATTTCTTTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170162 92 -  11645122 CTTGTTACTTTTTTATT------ACTGCTAATGGAAAACA-T----AATCTATAAGGAAGGCAAGGGCTGAATTTGTTTTAGGTAAAAAGATAAATTTCTTTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155471 92 -   6739814 CTTGTTACTTTTTTATT------ACTGCTAATGGAAAACA-T----AATCTATAAGGAAGGCAAGGGCTGAATTTGTTTTAGGTAAAAAGATAAATTTCTTTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45001 92 - 101219884 ATTGTTACTTTTTTATT------ACTGCTAATGGAAAACA-T----AATCTATAAGGAAGGTAAGGGCTGAATTTGTTTTAGGTAAAAAGATAAATTTCTTTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167617 92 -    785044 CTTGTTACTTTTTTATT------ACTGCTAATGGAAAACA-T----AATCTATAAGGAAGGCAAGGGCTGAATTTGTTTTAGGTAAAAAGATAAATTTCTTTG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56485 92 -  10971483 GTTGTTACTTTTTTATT------ACTGCTAATGGAAAATG-T----AATCTATAAGGAAGGCAAGGGCTGAATTTGTTTTATGTAAAAAGATAAATTTCTTTG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917212 98 -  13128814 GTTGTTACTTTTTTTTTTTTTTAATTGCTAATGGAAAATG-T----AATCTATAAGGAAAGCAAAGGCTGAATTTGGTTTATGTAAAAAGATAAATTTCTTTG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645605 90 +  14377064 GTTGTTACTTTTTTTT-------ATTGCTAATGGAAAATG-T----AATCTATAAGGAAAGCAAAGGCTGAATTTTG-TCATGTAAAATGATAAATTTCTTTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109622 89 -   9889416 ATTGTTACTTTTTT---------ATTGCTAATGGAAAATG-T----AATCTATAAGGAAAGCAAAGACTGAATTTGGTTTATGTAAAAAAATAAATTTCTTTG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20736506 91 +  38779656 GTTGTTGC-TTTTTATT------ACTGCTAAAGAAAAATATT----AATCTGTAAATAAAACAAGGGCTGAA-TTACCTCATGTAGAAAGATAGGCTTTTTTA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775333 93 -  39895921 GTTGGT-TTTCTTCATT------ACTTCTAAC-AAAAATA-TTTTAAATCTATAAAGAAAACAAGGGCTGAA-TTGTCTTATGTAGAAAGATGGGTTTACATG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6666888 87 +   6883506 --------TTTTTCATT------ACAGCTTATTGAAAATA-TTTACTATCTACAAGGAAAGCAAAGGCTGAAAGT-TCTCATGTAGAAAGATGGGTTTCCTTA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853145 97 -  47401472 I
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           61419 845 +   1229009 I

a score=475579.000000
s hg38.chr14_GL000009v2_random    157583 40 +    201709 GGTTTTAGCTTTCAAACATCAAG---ATA--GTAGGTCAATGTCT
s panTro5.chr9                  41847881 40 + 116767853 GGTTTTAGCTTTCAAACATCAAG---ATA--GTAGGTCAAAGTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809022 40 + 205426864 GGTTGTAGCTTTCAAACATCAAG---ATA--GTAGGTCGATGTCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218340 40 +    245036 GGTTGTAGCTTTCAAACATCAAG---ATA--GTAGGTCAATGTCT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094584 40 -  86207423 GGTTGTAGCTTTCAAACATCAAG---ATA--GTAGGTCAATGTCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251538 40 - 204787373 GGTTGTAGCTTTCAAACATCAAG---ATA--GTAGGTCAATGTCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150753 40 - 192460366 GGTTGTAGCTTTCAAACATCAAG---ATA--GTAGGTCAATGTCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170254 40 -  11645122 GGTTGTAGCTTTCAAACATCAAG---ATA--GTAGGTCAATGTCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155563 40 -   6739814 GGTTGTAGCTTTCAAACATCAAG---ATA--GTAGGTCAATGTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45093 40 - 101219884 GGTTGTAGCTTTCAAACATCAAG---ATA--GTAGGTCAATGTCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167709 40 -    785044 GGTTGTAGCTTTCAAACATCAAG---ATA--GTAGGTCAATGTCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56577 40 -  10971483 GATTGTAGCTTTCAAACATCAAG---ATA--GTAGGTCAATGTCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917310 40 -  13128814 GATTGTAGCTTTCAAACATCAAG---ATA--GTACATCAATGTCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645695 40 +  14377064 GGTTGTAGCTTTCAAACATCAAG---ATA--GTACATTAATGTCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109711 40 -   9889416 GGTTGTAGCTTTCAAACATCAAG---ATA--GTACATCAATGTCT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30853242 40 -  47401472 GGTTGTAGTTTTCAAACCCCAAG---ATA--GTAGGTCAATGTCT
i micMur3.chr31                I 97 I 48
s otoGar3.GL873528              20736597 42 +  38779656 GGTTGTGGTTTTCAAACACAAAG---ATAATATAGGTCAATGTCT
i otoGar3.GL873528             C 0 I 1
s canFam3.chr31                 28775426 43 -  39895921 TATTATACTTTTTAAACATCAAGTCAGTA--GTAGGTCAATGGCT
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6666975 22 +   6883506 GGTTTTGCCTTTGAAACATCAA-----------------------
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           61419 845 +   1229009 I

a score=431402.000000
s hg38.chr14_GL000009v2_random    157623 50 +    201709 AAATGAGTGTATCAAAGTTCTCACTATGGCACATGGAAATCCACCTCTTG
s panTro5.chr9                  41847921 50 + 116767853 AAATGAGTGTATCAAAGTTCTCACACTAGCACATGTAAATCCACCTCTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809062 50 + 205426864 AAATGAGTGTATCAAATTTCTCACACTAGCACATGTAAATCCACCTCTTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218380 50 +    245036 AAATGAGTGTATCAAATTTCTCACACTAGCACATGTAAATCCACCTCTTA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094624 50 -  86207423 AAATGAGTGTATCAAAGTTCTCACACCAGCACATGTAAATCCACCTCTTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251578 50 - 204787373 AAATGAGTGTATCAAAGTTCTCACACTAGCACATGTAAATCCACCTCTTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150793 50 - 192460366 AAATGAGTGTATCAAAGTTCTCACACTAGCACATGTAAATCCACCTCTTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170294 50 -  11645122 AAATGAGTGTATCAAAGTTCTCACACTAGCACATGTAAATCCACCTCTTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155603 50 -   6739814 AAATGAGTGTATCAAAGTTCTCACACTAGCACATGTAAATTCACCTCTTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45133 50 - 101219884 AAATGAGTGTATCAAAGTTCTCACACTAGCACAAGTAAATCCACCTCTTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167749 50 -    785044 AAATGAGTGTATCAAAGTTCTCACACTAGCACATGTAAATTCACCTCTTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56617 50 -  10971483 AAATGAGTGTATCAAAGTTCTCACACTAGCACATGTAAATCCACCTCTTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917350 49 -  13128814 AGATGAATGTGTCAAA-TTCTCACGCTAGCACATGTGAATCCACCTCTGA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645735 49 +  14377064 AGATGAATGTATCAAA-TTCTCACACTAGCACATGTGAATCCACCTCTGA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109751 49 -   9889416 AGATGAATGTATCAAA-TTCTCACACTAGCACATGTGAATCCACCTCTGG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20736640 49 +  38779656 AGCTGAGTTTACCAAACCTCCCAAATTACCACGTGTGAAGTCACC-CTGA
i otoGar3.GL873528             I 1 C 0
s canFam3.chr31                 28775470 22 -  39895921 AGTTGAGTGCACCAAAGTTTTG----------------------------
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6666997 18 +   6883506 ---------TACCAAGGT-----------------------CATGGCTGA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853282 48 -  47401472 I
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           61419 845 +   1229009 I

a score=362242.000000
s hg38.chr14_GL000009v2_random    157673 29 +    201709 TCTACCCAAA--ACTCTAACCAAGCAAAGGC
s panTro5.chr9                  41847971 29 + 116767853 TCTACCCAAA--ACTCTAACCAAGCAAAGGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809112 29 + 205426864 TCTACCCAAA--ATTCTAACCAAGCAAAGGC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218430 29 +    245036 TCTACCCAAA--ATTCGAACCAAGCAAAGGC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094674 29 -  86207423 TGTACCCAAA--ATTCTAACCAAGCAAAGAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251628 29 - 204787373 TCTACCCAGA--ATTCTAACCAAGCAAAGGC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150843 29 - 192460366 TCTACCCAGA--ATTCTAACCAAGCAAAGGC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170344 29 -  11645122 TCTACCCAGA--ATTCTAACCAAGCAAAGGC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155653 29 -   6739814 TCTACCCAGA--ATTCTAACCAAGCAAAGGC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45183 29 - 101219884 TCTACCCAGA--ATTCTAACCAAACAAAGGC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167799 29 -    785044 TCTACCCAGA--ATTCTAACCAAGCAAAGGC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56667 29 -  10971483 TCTACCCAGA--ATTCTAACCAAGCAAAGGC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917399 29 -  13128814 TCTACCCCAA--ATTCTAAACAAGCAAAGGC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645784 29 +  14377064 TCTACCCCAA--ATTCTAAACAAGCAAAGGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109800 29 -   9889416 TCTACCCCAA--ATTCTGAACAAGCAAAGGC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30853330 29 -  47401472 TCTACCTAAA--ATTCTAACCAAGCAAAGGC
i micMur3.chr31                I 48 I 393
s otoGar3.GL873528              20736689 29 +  38779656 TCCGCCCCAA--TTTCTAACCAAGCAGAGGC
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775492 31 -  39895921 TATGACTAAATGTGTCTAACCAACCAAAGGC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6667015 29 +   6883506 TCTGCCCAAA--ATTCCAAAGAAGTAAAGGC
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           61419 845 +   1229009 I

a score=287553.000000
s hg38.chr14_GL000009v2_random    157702 28 +    201709 AACTTGGAAG-AT-TCAGACAAATGTAAGT
s panTro5.chr9                  41848000 28 + 116767853 AAGTTGGAAG-AA-TCAGACAAATGTAAGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809141 28 + 205426864 AAGTTGGAAG-AA-CCAGACAAATGTAAGT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218459 28 +    245036 AAGTTGGAAG-AA-CCAGACAAATGTAAGT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094703 28 -  86207423 AAGGTGGAAG-AA-CCAGACAAATGTAAGT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251657 28 - 204787373 AACTTGGAAG-AA-CCAGACAAATGTAAGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150872 28 - 192460366 AACTTGGAAG-AA-CCAGACAAATGTAAGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170373 28 -  11645122 AACTTGGAAG-AA-CCAGACAAATGTAAGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155682 28 -   6739814 AAGTTGGAAG-AA-CCAGACAAATGTAAGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45212 28 - 101219884 AACTTGGAAG-AA-CCAGACAAATGTAAGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167828 28 -    785044 AAGTTGGAAG-AA-CCAGACAAATGTAAGA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56696 28 -  10971483 AAGTTGGAAG-AA-CCAGACAAATGTAAGA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917428 28 -  13128814 AAGTTGGAAG-AA-CCAGACAAATGTAAGA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645813 28 +  14377064 AAGTTGGAAG-AA-CCAGACAAATGTAAGA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109829 28 -   9889416 AAGTTGGAAG-AA-CCAGACAAATGTAAGA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20736718 28 +  38779656 TAGTGGGAAG-AA-TCAGACCAATGTGCAA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775523 29 -  39895921 AAGCTGGAGGCAT-CCAGACTGATATTTTA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6667044 29 +   6883506 AAGCTGGAAG-AATCCAGGCTTATGTATTA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853359 393 -  47401472 I
e nasLar1.chr2                    129764 3121 + 181502896 I
e eulFla1.LGHW01000695v1           61419 845 +   1229009 I

a score=8871.000000
s hg38.chr14_GL000009v2_random    157730 1 +    201709 G
s panTro5.chr9                  41848028 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809169 1 + 205426864 C
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218487 1 +    245036 G
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094731 1 -  86207423 G
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251685 1 - 204787373 G
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150900 1 - 192460366 G
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170401 1 -  11645122 G
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155710 1 -   6739814 G
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45240 1 - 101219884 G
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167856 1 -    785044 G
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    132885 1 + 181502896 G
i nasLar1.chr2                 I 3121 I 462
s colAng1.NW_012123820v1           56724 1 -  10971483 G
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917456 1 -  13128814 A
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645841 1 +  14377064 G
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109857 1 -   9889416 G
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20736746 1 +  38779656 A
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775552 1 -  39895921 G
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6667073 1 +   6883506 G
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853359 393 -  47401472 I
e eulFla1.LGHW01000695v1           61419 845 +   1229009 I

a score=1256716.000000
s hg38.chr14_GL000009v2_random    157731 136 +    201709 CCTAGGATACA----TAAATGC----------CACGGGATTTTATGTTTTTAACTTTCAACCTCCTAAGTTTCACTAAGAGACA-TGTTGT--TTGGAGAGGTTGCTAAAGTG-TATTTGAATGATGTCTCTGTTTACGGTTGGTCTGGACCTC
s panTro5.chr9                  41848029 136 + 116767853 CCTAGGATACA----TAAATGT----------CACTGGATTTTATGTTTTTAACTTTCAACGTCCCAAGTTTCACTAAGAGACA-TGTTAT--TTGGAGAGGTTGCTAAAGTG-TAGTTGTATGATGTCTTTGTGTACGGTTGGTCTGGACCAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809170 136 + 205426864 CCTAGGATGCA----TAAATGC----------CACTGGATTTTATGTTTTTAATTTTCAACCTCCCAGGTTTCACTAAGAGACA-TGTTAT--TTGGAGAGGCTGCTCAAGTG-TAATTGTATGATGTCTCTGTGTACGGTTGGTCTGGACCTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218488 136 +    245036 CCTAGGATGCA----TAAATGC----------CACTGGATTTTATGTTTTTAATTTTCAACCTCCCAAGTTTCACTAACAGACA-TGTTAT--TTGGAGAGGCTGCTCAAGTG-TAATTATATGATGTCTCTGTGTACGGTTGGTCTGGACCTC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094732 136 -  86207423 CCTAGGATACA----TAAATGC----------CACTGGATTTTATGTTTTTAATTTTCAACCTCCCAAGTTTCACTAAGAGACA-TGTTAT--TTGGAGAGGTTGCTAAAGTG-TAATTGCATGATGTCTCTGTGTACGGTTGGTCTGGACCTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251686 140 - 204787373 CCTAGGATACATACGTAAATGC----------CACTGGATTTTATGTTTTTAATTTTCAACCTCCCAAGTTTCACGAAGAGACA-TATTAT--TTGGAGACGTTGGTAAAGTG-TAATTGTATGATGTCTCGACGTACGGTTGGTCTGGACCCC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    150901 140 - 192460366 CCTAGGATACATACGTAAATGC----------CACTGGATTTTATGTTTTTAATTTTCAACCTCCCAAGTTTCACGAAGAGACA-TATTAT--TTGGAGACGTTGGTAAAGTG-TAATTGTATGATGTCTCGACGTACGGTTGGTCTGGACCCC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170402 140 -  11645122 CCTAGGATACATACGTAAATGC----------CACTGGATTTTATGTTTTTAATTTTCAACCTCCCAAGTTTCACGAAGAGACA-TATTAT--TTGGAGACGTTGGTAAAGTG-TAATTGTATGATGTCTTGACGTACGGTTGGTCTGGACCCC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155711 138 -   6739814 CCTAGGATACATACGTAAATGC----------CACTGGATTTTATGTTTTTAATTTTCAACCTCCCAAGTTTCACT--GAGACA-TATTAT--TTGGAGATGTTGGTAAAGTG-TAATTGTATGATGTCTCCACATACGGTTGGTCTGGACCCC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45241 140 - 101219884 CCTAGGATACATACCTAAATGC----------CACTGGGTTTTATGTTTTTAATTTTCAACCTCCCAAGTTTCACTAAGAGACA-TATTAT--TTGGAGATGTTGGTAAAGTG-TAATTGTATGATGTCTCCGCGTACAGTTGGTCTGGACCCC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167857 140 -    785044 CCTAGGATACATACGTAAATGC----------CACTGGATTTTATGTTTTTAATTTTCAACCTCCCAAGTTTCACTAAGAGACA-TATTAT--TTGGAGATGTTGGTAAAGTG-TAATTGTATGATGTCTCCACGTACGGTTGGTCTGGACCCC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56725 127 -  10971483 CCTAGGATACATACGTAAATGC----------CACTGGATTTTATGTTTTTAATTTTCAACCTCCCAAGTTTCACTAAGAGACA-TATTAT--TTGGAGATGTTG--------------GTATGATGTCTCCGCGTACAGTTGGTCTGGACCCC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917457 136 -  13128814 CCTAGGATACA----TAAATGC----------TATTGGATTTTATGTTTCTAATTTTCAGCCTCCCAAGTGTCACTAGGAGACA-TGTTAT--TTGGGGATGTTGGTAAAGTG-TAAATGCAAGATGTTTCTGTGTATGGCTGGTCTGGACCTC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645842 136 +  14377064 CCTAGGATACA----TAAATGA----------CATTGGATTTTATGTTTCTAATTTTCAGCCTCCCAAGTGTCACTAGGAGACA-TGTTAT--TTGGGGATGTTGGTAAAGTG-TAATTGCAAGATGTTTCTGTGTATGGCTGGTCTGGACCTC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109858 136 -   9889416 CCTAGGATACA----TAAATGC----------CATTGGATTTTATGTTTCTAATTTTTAGCCTCCCAAGTGTCACTAGGAGACA-TGTTAT--TTGGGGATGTTGGTAAAGTG-TAATTGCAAGATGTTTCTGTGTATGGCTGGTCTGGACCTC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20736747 130 +  38779656 CTTAGGGTATA----TGAGTGCCCTAAACATACACTGAAATGTATGTTTCTAATTTTTAACCACCCAAGTGACATAAAGACACAGTGTTAT--TTGGA-----TGTTGGAGT-------------TTTCTTGGTATATGGCTGGTCTTGGTCTC
i otoGar3.GL873528             C 0 I 19
s canFam3.chr31                 28775553 133 -  39895921 -CCAAGGCAAA----TTAACAT----------AATTGAATTGCTTGTTCTAATTTTTAAACTTTTAATGTCT-----AGAGACA-CAATGCTGTTGGATATATTGATAAAGAGTTAGTTGCAAAATGTCTTGGTGTATGGCTGAGCTTGGTCTG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6667074 137 +   6883506 TCAAAGGCAAA----TGAGTAT----------CACTGAATTGTATATTTCTAATTTTTGACCTTTTAAGTGTCAGAAAGAAACACTGTTAT--TTGGATGTTATGATAAAGAG-TAAATTGAAGGTGTCTTGGTAAATGGCTGGTATTGATCTC
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853359 393 -  47401472 I
e nasLar1.chr2                    132886 462 + 181502896 I
e eulFla1.LGHW01000695v1           61419 845 +   1229009 I

a score=20596.000000
s hg38.chr14_GL000009v2_random    157867  6 +    201709 -------------------TTGCTG-------------------------------------
s panTro5.chr9                  41848165  6 + 116767853 -------------------TTTCTG-------------------------------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809306  6 + 205426864 -------------------TCTCTG-------------------------------------
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218624  6 +    245036 -------------------TCTCTG-------------------------------------
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094868  6 -  86207423 -------------------TCTCTG-------------------------------------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251826  6 - 204787373 -------------------TCTCTG-------------------------------------
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151041  6 - 192460366 -------------------TCTCTG-------------------------------------
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170542  6 -  11645122 -------------------TCTCTG-------------------------------------
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155849  6 -   6739814 -------------------TCTCTG-------------------------------------
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45381  6 - 101219884 -------------------TCTCTG-------------------------------------
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          167997  6 -    785044 -------------------TCTCTG-------------------------------------
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56852  6 -  10971483 -------------------TCTCTG-------------------------------------
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917593  6 -  13128814 -------------------TCTCTG-------------------------------------
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645978  6 +  14377064 -------------------TCTCTG-------------------------------------
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4109994  6 -   9889416 -------------------TCTCTG-------------------------------------
i aotNan1.NW_018487195v1       C 0 C 0
s tarSyr2.KE928251v1               70859  6 -     87482 -------------------TCTCAG-------------------------------------
i tarSyr2.KE928251v1           N 0 I 701
s otoGar3.GL873528              20736896  6 +  38779656 -------------------CCTCAG-------------------------------------
i otoGar3.GL873528             I 19 I 17
s canFam3.chr31                 28775686  2 -  39895921 -----------------------TA-------------------------------------
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6667211 62 +   6883506 TAAGACCTACAGAGGGCACTTTCAGGTCAACAAGCATTAGTCTCACTCCCAGCCCCCTTCTC
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853359 393 -  47401472 I
e nasLar1.chr2                    132886 462 + 181502896 I
e eulFla1.LGHW01000695v1           61419 845 +   1229009 I

a score=1780060.000000
s hg38.chr14_GL000009v2_random    157873 207 +    201709 TCCAGTGGTTGCCCTCAACTGATGAGAGTCACCTCTCTAAAGATCATGCTTACGTCCCTGGAGCAGTCCACAGCACTATCAATGTCTGAC---------GTCCACCTTTTTCCAATTAATATTTCTGTACTTACTGAATTGGAAAACATACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTACAACACTCCCCCCACTTC---CCCACCACTGcccca
s panTro5.chr9                  41848171 207 + 116767853 TCCAGTGGTTGCCCTCAACTGATTAGAGTCATCTCTCTAAAGATCATGCTTATGTCCCTGGAGCAGTCCACAACACTATCAATGTCTGAC---------CTCCACCTTTTTCCAATTAATATTTCTGTACTTACTGAATTGGAATACATACAGATGTTTTTTGCCTGGTCACTTGTGGTTTTACAACACTCCTTCCGCTTC---CCCACCACTGcccca
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809312 206 + 205426864 TCCAATGGTTGCCCTCAACTGATTAGAGCCACCTCTCTAAAGATCACGCTTATGTCCCTGGAGCAGTCCACAGCACTATCAACGTGTGAC---------CTCCACCTTGTTCCAATTAAGATTTCTGTACTTACTGAATTGGAAAACATACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTACAACACTCCCT-CGCTTC---CCCACCACTGcccca
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218630 206 +    245036 TCCAATGGTTGCCCTCAACTGATTAGAGCCACCTCTCTAAAGATCACGCTTATGTCCCTGGAGCAGTCCACAGCACTATCAATTTCTGAC---------CTCCACCTTGTTCCAATTAAGATTTCTGTACTTACTGAATTGGAAAACATACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTACAACACTCCCC-CCCTTC---CCCACCACTGcccca
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42094874 205 -  86207423 TCCAGTGGTTGCCCTCAACTGGTTAGAGCCACTTCTCTAAAGATCATGCTTATGTCCCTGGAGCAGTCCACAGCACTATCAATGTCTGAC---------CTCCACCTTGTTCCGGTTAAGATTTCTGTACTTACTGAATTGGAAAACATACAGGTGTTTTCTGCCTGGTCACTTGTGGTTTTACAACACTCTC--CCCCTC---CCCACCACTGctcca
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204251832 201 - 204787373 TCCAGTGGTTGCCCTCAACTGATTAGAGCCACCTCTCTAAAGATCATGCTTATGTCCATGGAGCAGTCCACAGCATTATAAA----TGAC---------CTCCACCTTGCTCCAACTGAGATTTCTAGACTTACTGAATTGGAAAACACACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTACAACACTACC--CCTCGC---CCCACCACTGcccca
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151047 201 - 192460366 TCCAGTGGTTGCCCTCAACTGATTAGAGCCACCTCTCTAAAGATCATGCTTATGTCCATGGAGCAGTCCACAGCACTATAAA----TGAC---------CTCCACCTTGCTCCAACTGAGATTTCTAGACTTACTGAATTGGAAAACACACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTACAATACTACC--CCTCGC---CCCACCACTGcccca
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170548 201 -  11645122 TCCAGTGGTTGCCCTCAACTGATTAGAGCCACCTCTCTAAAGATCATGCTTATGTCCATGGAGCAGTCCACAGCACTATAAA----TGAC---------CTCCACCTTGCTCCAACTGAGATTTCTAGACTTACTGAATTGGAAAACACACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTACAACACTACC--CCTCGC---CCCACCACTGcccca
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          155855 201 -   6739814 TCCAGTGGTTGCCCTCAACTGATTAGAGCCACCTCTCTAAAGATCATGCTTATGTCCATGGAGCAGGCCACAGCACTATAAA----TGAC---------CTCCACCTTGTTCCAACTGAGATTTCTAGACCTACTGAATTGAAAAACACACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTACAACACTACC--CCTCGC---CCCACCACTGcccca
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45387 201 - 101219884 TCCAGTGGTTGCCCTCAACTGATTAGAGCCACCTCTCTAAAGGTCATGCTTATGTCCATGGAACAGTCCACAGCACTATAAA----TGAC---------CTCCACCTTGTTCCAATTGAGATTTCTATACTTACTGAATTGAAAAACACACAGGTGTTCTTTGCCTGGTCACTTGTGGTTTTACAACACTATC--CCTCGC---CCCACCACTGccccc
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168003 201 -    785044 TCCAGTGGTTGCCCTCAACTGATTAGAGCCACCTCTCTAAAGATCATGCTTATGTCCATGGAGCAGTCCACAGCACTATAAA----TGAC---------CTCCACCTTGTTCCAACTGAGATTTCTAGACCTACTGAATTGAAAAACACACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTACAACACTACC--CCTCGC---CCCACCACTGcccca
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           56858 204 -  10971483 TCCAGTGGTTGCCCACAACTGATTAGAGCCACCTCTCTAAAGATCATGCTTATGTCCATGGAGCAGTCCACAGCACTATAAA----TGAC---------CTCCACCTTGTTCCAATTAAGATTTCTAGACTTACTGAATTGGAAAACACACAGGTGTTTTTTGCCTGGTCACTTGTGGTTTTACAACACTACC--CACCACTTGCCCACCACTGcccca
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917599 200 -  13128814 TCCAGTGGTTGCCCTCAATGGATTAGAGCCACCTCTCTAAAGAGCATTCTTATGTCCCAGGAGCAGTCAACCGCACTACAAATGTCTGAT---------CTCCACCTTGTTCCAATTAAGATTTCTGTGCTTACCGAATTGGAAAACATACAGGTGT----TGCTTGGTCACTTGTGGTTTTACAACACTCCC--CTAC-C---TCCACCATCGCAcca
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7645984 200 +  14377064 TTCAGTGGTTGCCCTCAATGGATTAGACCCACTTCTCTAAAGATCATGCTTTTGTCCCAGGAGCAGTCAGCAGCACTGTAAATGTCTGAT---------CTCCACCTTGTTCCAGTTAAGATTTCTGTGcttactgaattggaaaacatacaggtgt----tgcttggtcacttgtggttttacaacactccc--ctgc-c---accatcaccgtgcca
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110000 200 -   9889416 TCCCGTGATTGCCCTCAATGGATTAGAGCCACCTCTCTAAAGATCATGCTTGTGTCCCAGGAGCAGTCAACAGCACTATAAATGTCTGAT---------CTCTGCCTTGTTCTAATTAAGATTTCTGTACTTACTGAATTGGAAAACATACAGGTGT----TGCTTGGTCACTTATGGTTTTACAACACTCCC--CCGC-C---ACCACCACTGCGcca
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20736919 190 +  38779656 ctctcttattgccctcagctgagtagagccacctctcccaagggcatgctcatgtcccaggacCTGCCCATAGTACTATAAATGTCCGAC---------TTCCACATGGATCCAATTAGAATTTCTGTGTTTACTGGACTGGAAATTACACTGGTAG----TACTGGGCCACCTGTGGCTTCACAGCTGCCTC--C----C---CCCACCAA-------
i otoGar3.GL873528             I 17 C 0
s canFam3.chr31                 28775689 167 -  39895921 -------------CACAGCGGGATAGAGTCACTTCTACCAAAGTCATGAGATGTTTCCAGGAGTAGCACATGGTGTTATTACTACCTGACCCCACTTTGCCCCACCTTGCTCCAAGTTGGGTTTCTCTTcttactgaactggaaa--------------ctctcccagccagttgtggcttcacaggcccttc--a-----------------------
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6667273 176 +   6883506 CCCAGGGATTGCCCTCACCTGAATAGTG--GTCTCCCCCAAGGTCAAGACCCCATCCCAGGAGCAGCTTTCAG--TTATAAATGCTTGGC---------CCTTATCTTGACCAAATTTGGGTTTCTATAATtactgagttggaaactcagagaatgg----ggcccaggcacctg-gctttcacaagcccttc--a-----------------------
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853359 393 -  47401472 I
e nasLar1.chr2                    132886 462 + 181502896 I
e eulFla1.LGHW01000695v1           61419 845 +   1229009 I
e tarSyr2.KE928251v1               70865 701 -     87482 I

a score=904692.000000
s hg38.chr14_GL000009v2_random    158080 88 +    201709 ggtgattttgatgccagccaaagtgtgagaactactgGCAGCTGCTGGCAGAGAGCAGCAAAGGCCCA-AATCCT--GTGTGATTTAAAGA-
s panTro5.chr9                  41848378 90 + 116767853 ggtgattttgatgccagccaaagtgtgagaactactgGCAGCTGGTGGCAGACAGCAGCAAAGTCCCA-AATTCTCTGTGTAATTTCAAGA-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809518 90 + 205426864 ggtgattttgatgccagccaaaatgtgagaactactgGCAGCTGCTGGCAGACAGCAACAAAGGCCCA-AAACCTCTGTGTGATTTCAAGA-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218836 90 +    245036 ggtgattttgatgccagccaaagtgtgagaactactgGCAGCTGCTGGCAGACAGCAACAAAGGCCCA-AATCCTCTGTGTGATTTCAAGA-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095079 90 -  86207423 ggtgattttgatgccagccagagtgtgagaactactgGCAGCTGCTGGCAGAGAGCAACAAAGACCCA-AACCCTCTGCGTGATTTGAAGA-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252033 90 - 204787373 ggtgattttgatgccagccaaagtgtgagaactactgGCAGCTGCTATCAGAGAGCAACAGAGGCCCC-AATCCTCTGTGTGATTTCAAGA-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151248 90 - 192460366 ggtgattttgatgccagccaaagtgtgagaactactgGCAGCTGCTATCAGAGAGCAACAGAGGCCCC-AATCCTCTGTGTGATTTCAAGA-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170749 90 -  11645122 ggtgattttgatgccagccaaagtgtgagaactactgGCAGCTGCTATCAGAGAGCAACAGAGGCCCC-AATCCTCTGTGTGATTTCAAGA-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156056 90 -   6739814 ggtgattttgatgccagccaaagtgtgagaactactgGCAGCTGCTATCAGAGAGCAACAAAGGCCCT-GATCCTCTGTGTGATTTCAAGA-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45588 90 - 101219884 ggtgattttgatgccagccaaagtgtgagaactactgGCAGCTGCTATCAGAGAGCAACAAAGGCCCT-GATCCTCTGTGTGATTTCAAGA-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168204 90 -    785044 ggtgattttgatgccagccaaagtgtgagaactactgGCAGCTGCTATCAGAGAGCAACAAAGGCCCT-GATCCTCTGTGTGATTTCAAGA-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57062 90 -  10971483 ggtgattttgatgccacccaaagtgtgagaactactgGCAGCTGCTATCAGAGAGCAACAAAGGCCCC-GATCCTCTGTGTGATTTCAAGA-
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917799 77 -  13128814 ggtgattttgatcccagctaaagtgtgagaactactgGCAGCTGCTGGCAGAGAGCAACAAAGATCGA-AATTCTCTG--------------
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646184 77 +  14377064 ggtgattttgatcccaactaaagtgtgagaactactgGCAGCTGCTAGCAGAGAGCAACAAAGATCGA-AATCCTCTG--------------
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110200 77 -   9889416 ggtgattttgatcctaactaaagtttgagaactactgGCAGCTGCTGGCAGAGAGCAACAAAGATCAA-AATCCTCGG--------------
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30853752 90 -  47401472 ggtaattttgatgcaaactaaattgtgagaactactgGCCCCTGCTGGCAGAGAGCTACAAAGGCCTA-AATCCCCTGTGTGCTTTAAAGA-
i micMur3.chr31                I 393 C 0
s otoGar3.GL873528              20737109 90 +  38779656 GGTACTTTAGATGCAGAGTAAATTGTGAGAACTACTGGCACCTGATGGCAGGGAGCAACCGAAGCCCATATTCCCCCATGT-CTTTAAAGA-
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775856 74 -  39895921 ggtgattctaat-------------TGAGGACTATTAGCAAC---TAGCAGAGAGCAACAAAGGATGA-AATCTCCCATATGGTTTAGAGA-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6667449 81 +   6883506 agtgattctgaagcaaggtaaggtgtgagaactactAACAGT----------GACCCATAAAGGCCCA-AATCCTCCTGAAAGGTTCATGGA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    132886 462 + 181502896 I
e eulFla1.LGHW01000695v1           61419 845 +   1229009 I
e tarSyr2.KE928251v1               70865 701 -     87482 I

a score=20596.000000
s hg38.chr14_GL000009v2_random    158168 3 +    201709 CCA
s panTro5.chr9                  41848468 3 + 116767853 CCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809608 3 + 205426864 CCC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218926 3 +    245036 CCC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095169 3 -  86207423 CCC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252123 3 - 204787373 CCC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151338 3 - 192460366 CCC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170839 3 -  11645122 CCC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156146 3 -   6739814 CCC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45678 3 - 101219884 CCC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168294 3 -    785044 CCC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57152 3 -  10971483 CCC
i colAng1.NW_012123820v1       C 0 C 0
s micMur3.chr31                 30853842 3 -  47401472 CCC
i micMur3.chr31                C 0 C 0
s eulMac1.LGHX01000692v1           61234 1 +   1212331 --T
i eulMac1.LGHX01000692v1       N 0 I 7611
s eulFla1.LGHW01000695v1           62264 1 +   1229009 --T
i eulFla1.LGHW01000695v1       I 845 I 34
s otoGar3.GL873528              20737199 2 +  38779656 -CC
i otoGar3.GL873528             C 0 I 1
s canFam3.chr31                 28775930 2 -  39895921 -CT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6667530 2 +   6883506 -CC
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    132886 462 + 181502896 I
e aotNan1.NW_018487195v1         4110277 0 -   9889416 C
e cebCap1.NW_016107322v1         7646261 0 +  14377064 C
e saiBol1.JH378168              10917876 0 -  13128814 C
e tarSyr2.KE928251v1               70865 701 -     87482 I

a score=217120.000000
s hg38.chr14_GL000009v2_random    158171 22 +    201709 GTATCTGG-TTTTCAGCCATATT-
s panTro5.chr9                  41848471 22 + 116767853 GTATCTGG-TTTTCAGCCATATT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809611 22 + 205426864 GTATCTTG-TTTTCAGCTGTATT-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218929 22 +    245036 ATATCTGG-TTTTCAGCTGTATT-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095172 22 -  86207423 GTATCTGC-TTTTCAGCTGTATG-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252126 22 - 204787373 GTATCTGC-TTTTCAGCCATGTT-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151341 22 - 192460366 GTATCTGC-TTTTCAGCCATGTT-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170842 22 -  11645122 ATATCTGC-TTTTCAGCCATGTT-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156149 22 -   6739814 GTATCTGG-TTTTCAGCCATGTT-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45681 22 - 101219884 GTATCTGG-TTTTCAGCCATGTT-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168297 22 -    785044 GTATCTGG-TTTTCAGCCATGTT-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57155 22 -  10971483 ACATCTGG-TTTTCAGCCATGTT-
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917876 21 -  13128814 -TGTCTGG-TTTTCAGCCATATC-
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646261 21 +  14377064 -TATCTGG-TTTTCAGCCATATT-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110277 21 -   9889416 -TATCTGG-TTTTCAGCCATATT-
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30853845 22 -  47401472 CCATCTGG-TTTTCAGCCTTATT-
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20737202 22 +  38779656 AGATCTGG-TCTCTAGCCTTCTT-
i otoGar3.GL873528             I 1 C 0
s canFam3.chr31                 28775932 20 -  39895921 GCATCTAGTTTTTCAGCCTT----
i canFam3.chr31                C 0 I 3
s dasNov3.JH568778               6667532 22 +   6883506 -TCATTGG-TTTTCAGCCTTAATG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    132886 462 + 181502896 I
e eulFla1.LGHW01000695v1           62265 34 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               70865 701 -     87482 I

a score=47467.000000
s hg38.chr14_GL000009v2_random    158193 6 +    201709 TCCTTC
s panTro5.chr9                  41848493 6 + 116767853 GCCTTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809633 5 + 205426864 TCCTT-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218951 5 +    245036 TCCTT-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095194 6 -  86207423 TCCTTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252148 6 - 204787373 GCCTTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151363 6 - 192460366 GCCTTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170864 6 -  11645122 GCCTTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156171 6 -   6739814 GCCTTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45703 6 - 101219884 GCCTTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168319 6 -    785044 GCCTTC
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    133348 6 + 181502896 GCCTTG
i nasLar1.chr2                 I 462 I 299
s colAng1.NW_012123820v1           57177 6 -  10971483 GCCTTC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917897 6 -  13128814 GCCTTC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646282 6 +  14377064 GCCTTC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110298 6 -   9889416 GCCTTC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30853867 6 -  47401472 GCCTTC
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20737224 6 +  38779656 GTCTGT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775955 3 -  39895921 ACC---
i canFam3.chr31                I 3 C 0
s dasNov3.JH568778               6667554 6 +   6883506 CCCTTC
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1           62265 34 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               70865 701 -     87482 I

a score=999.000000
s hg38.chr14_GL000009v2_random    158199 1 +    201709 T
s panTro5.chr9                  41848499 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42095200 1 -  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252154 1 - 204787373 T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151369 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170870 1 -  11645122 T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156177 1 -   6739814 T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45709 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168325 1 -    785044 T
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57183 1 -  10971483 T
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917903 1 -  13128814 A
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646288 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110304 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30853873 1 -  47401472 T
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20737230 1 +  38779656 G
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775958 1 -  39895921 T
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6667560 1 +   6883506 T
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    133354 299 + 181502896 I
e eulFla1.LGHW01000695v1           62265 34 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e panPan2.chr3                  77809638 0 + 205426864 C
e tarSyr2.KE928251v1               70865 701 -     87482 I
e gorGor5.CYUI01000160v1          218956 0 +    245036 C

a score=61500.000000
s hg38.chr14_GL000009v2_random    158200 6 +    201709 CCTTCT-
s panTro5.chr9                  41848500 6 + 116767853 CCTTCT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809638 5 + 205426864 -CTTCT-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218956 5 +    245036 -CTTCT-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095201 6 -  86207423 CCTTCT-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252155 6 - 204787373 CCTTCT-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151370 6 - 192460366 CCTTCT-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170871 6 -  11645122 CCTTCT-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156178 6 -   6739814 CCTTCT-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45710 6 - 101219884 CCTTCT-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168326 6 -    785044 CCTTCT-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57184 6 -  10971483 CCTTCT-
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917904 6 -  13128814 CCTTCT-
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646289 6 +  14377064 CCTTCT-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110305 6 -   9889416 CCTTCT-
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30853874 5 -  47401472 -CCTTT-
i micMur3.chr31                C 0 I 1
s eulFla1.LGHW01000695v1           62299 5 +   1229009 -TCTTT-
i eulFla1.LGHW01000695v1       I 34 I 4630
s otoGar3.GL873528              20737231 5 +  38779656 -CCTCT-
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775959 5 -  39895921 -CTCAT-
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6667561 6 +   6883506 -CTTACC
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    133354 299 + 181502896 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               70865 701 -     87482 I

a score=221645.000000
s hg38.chr14_GL000009v2_random    158206 19 +    201709 CACAGCTGAGTCCAC--------TCCT
s panTro5.chr9                  41848506 19 + 116767853 CACAGCTGAGCCCAC--------TCCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809643 19 + 205426864 CACAGCTGAGCCCCC--------TCCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218961 19 +    245036 CACAGCTGAGCCCCC--------TACT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095207 19 -  86207423 CACAGCTGAGCCCAC--------GCCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252161 19 - 204787373 CACAGCTGAGCCTAC--------TCCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151376 19 - 192460366 CACAGCTGAGCCTAC--------TCCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170877 19 -  11645122 CACAGCTGAGCCTAC--------TCCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156184 19 -   6739814 CACAGCTGAGCCTAC--------TCCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45716 19 - 101219884 CACAGCTGAGCCTAC--------TCCT
i chlSab2.chr22                C 0 I 217
s manLeu1.NW_012099043v1          168332 19 -    785044 CACAGCTGAGCCTAC--------TCCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57190 19 -  10971483 CACAGCTGAGCCTAC--------TCCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917910 19 -  13128814 CACAGCTGAGTCCAC--------TCTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646295 19 +  14377064 CACAGCTGAGTCCAC--------TCCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110311 19 -   9889416 CACAGCTGAGTCCAC--------TCCT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30853880 19 -  47401472 CACAGCTGGGTCCAC--------TCCT
i micMur3.chr31                I 1 C 0
s otoGar3.GL873528              20737236 19 +  38779656 CCCAGCTGGGCCCAC--------TCTT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775965 19 -  39895921 CACAGCCTGGCCCTT--------TACC
i canFam3.chr31                I 1 I 6
s dasNov3.JH568778               6667567 26 +   6883506 CACAGCTGGGTTTACCAGACTTGTCC-
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    133354 299 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               70865 701 -     87482 I

a score=22143.000000
s hg38.chr14_GL000009v2_random    158225 2 +    201709 CC
s panTro5.chr9                  41848525 2 + 116767853 CC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809662 2 + 205426864 CC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218980 2 +    245036 AC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095226 2 -  86207423 CC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252180 2 - 204787373 CC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151395 2 - 192460366 CC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170896 2 -  11645122 CC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156203 2 -   6739814 CC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45952 2 - 101219884 CC
i chlSab2.chr22                I 217 C 0
s manLeu1.NW_012099043v1          168351 2 -    785044 CC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57209 2 -  10971483 CT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917929 2 -  13128814 CC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646314 2 +  14377064 CC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110330 2 -   9889416 CC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30853899 2 -  47401472 CC
i micMur3.chr31                C 0 I 1396
s otoGar3.GL873528              20737255 2 +  38779656 GC
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775990 2 -  39895921 CC
i canFam3.chr31                I 6 I 4
s dasNov3.JH568778               6667593 2 +   6883506 CT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    133354 299 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               70865 701 -     87482 I

a score=1376477.000000
s hg38.chr14_GL000009v2_random    158227 143 +    201709 TCCCT------------------CACCACCTGTAGGCTATGCT--TTCCAGCCTGTGTCCAGGATTAGTCCTGATGTAAGGCACGTGGGGTTTAAGGAACTCTCTCTTC--AGTC------TTATTTCCGCACAATCTCTGAAAGAT-----ATATTCCAGTTGTAATCATGGGGC
s panTro5.chr9                  41848527 143 + 116767853 TCCCT------------------CACCACCTGTAGGCTATGCT--TTCCAGCCTGTGTCCAGGATTAGTCCTGATGTAAGGCACGTGGGGTTTAAGGATCTCTCTCTTC--AGTC------TTATTTCCGCACCATCTCTGACAGAT-----ATATTCCAGTTGTAATCATGGGGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809664 143 + 205426864 TCCCT------------------CACCACCTGTAGGCTATGCT--TTCCAGCCTGTGTCCAGGATTAGTCCTGGGGTAAGGCACGTGGGGTTTAAGGCACTCTCTCTTC--AGTC------TTATTTCTGCACCATCTCTGACAGAT-----ATATTCTAGTTGTAATCATGGGGC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          218982 143 +    245036 TCCCT------------------CACCACCTGTAGGCTATGCT--TTCCAGCCTGTGTCCAGGATTAGTCCTGAGGTAAGGCACGTGGGGTTTAAGGCGCTCTCTCTTC--AGTC------TTATTTCTGCACCATCTCTGACAGAT-----ATATTCTAGTTGTAATCATGGGGC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095228 143 -  86207423 TCCCT------------------CAGCACTTGCAGGCTATGCT--TTCCAGCTTGTGTCCAGGATGAGTCCTGACGTCAGGCACGTGGGGTTTAAGGAGTTCTCTCTTC--AGTC------TTGTTTCCGCACCATCTCTGACAGTT-----ATATTCTAGTTGTAATCATGGGGC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252182 143 - 204787373 TCCCT------------------CACCACCTGTGGGCTATGCT--TTGCTGTCTGTGTCCAGGATTATTCCTGACGTAAGGCACGTGGGGTTTAAGGAGCTCTCTCTTC--AGTC------TTATTTCTGCACCATCTCTGACAGAT-----GTGTTCTAGTTGTAATCATGGGGC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151397 143 - 192460366 TCCCT------------------CACCACCTGTGGGCTATGCT--TTGCTGTCTGTGTCCAGGATTATTCCTGACGTAAGGCACGTGGGGTTTAAGGAGCTCTCTCTTC--AGTC------TTATTTCTGCACCATCTCTGACAGAT-----GTGTTCTAGTTGTAATCATGGGGC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          170898 143 -  11645122 TCCCT------------------CACCACCTGTGGGCTATGCT--TTGCTGTCTGTGTCCAGGATTATTCCTGACGTAAGGCACGTGGGGTTTAAGGAGCTCTCTCTTC--AGTC------TTATTTCTGCACCATCTCTGACAGAT-----GTGTTCTAGTTGTAATCATGGGGC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156205 143 -   6739814 TCCCT------------------CACCACCTGTAGGCTATGCT--TTGCTGTCTGTGTCCAGGATTATTCCTGACGTAAGGCACGTGGGGTTTAAGGAGCTCTCTCTTC--AGTC------TTATTTCTGCACCATCTCTGACAGAT-----GTATTCTAGTTGTAATCATGGGGC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    45954 143 - 101219884 TCCCT------------------CACCACCTGTAGGCGATGCT--TTGCTGTCTGTGTCCAGGATTATTCCTGACATAAGGCACGTGGGGTTTCAGGCGCTCTCTCTTC--AGTC------TTATTTCTGCACCGTCTCTGACAGAT-----GTATTCTAGTTGTAATCATGGGGC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168353 143 -    785044 TCCCT------------------CACCACCTGTAGGCTATGCT--TTGCTGTCTGTGTCCAGGATTATTCCTGACGTAAGGCACATGGGGTTTAAGGAGCTCTCTCTTC--AGTC------TTATTTCTGCACCATCTCAGACAGAT-----GTGTTCTAGTTGTAATCATGGGGC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57211 143 -  10971483 TCCCT------------------CACCACCTGTAGGCTATGCT--TTCCTGTCTGTGTCTAGGATTATTCCTGACGTAAGGCACGTGGGGTTAAAGGAGCTCTCTCTTC--AGTC------TTATTTCTGCACCATCTTTGACAGAT-----GTATTCTAGTTGTAATCATGGGGC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10917931 141 -  13128814 TCCCA------------------CACCACGTGTAGGCTATGCT--CTCCTGCATGTGCCCAGGATTAGTCCTGACGTAAGGGAGATGGGGTTTAAGGAA--CTCTCTTC--AGTC------TTATTTCTGCACCATCTCTGACAGAT-----GTATTCTAATTGTAGTCATGAGGC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646316 143 +  14377064 TCCCC------------------CACCACCTGTAGGCTATGCT--CTCCTGCCTGTGCCCAGGATTAGTCCTGACGTAAGGGAGATGGGGTTTAAGGAGCTCTCTCTTC--ATTC------TTATTTCTGCACCATCTCTGACCCAT-----GTATTCTAGTTGTAATCATGAGGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110332 143 -   9889416 TCCCC------------------CACCACGTGTAGGCTATGCT--TTCCTGCCTGTGCCCAGGATTAGTCCTGACGTAAGGGAGATGGGGTTTAAGGAGCTCTCTCTTC--AGTC------TTATTTATGCACCATCTCTGACAGAT-----GTATTCTAATTCTAATCATGAGGC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20737257 141 +  38779656 -CTCC------------------CCGCACCTGCAGGCCATATT--CTCCTCTGT-TGTTCAAGATTATCTCTGACCTAAGGCAGACCAGATTTAAGAAGTTCTCATTTA--AGAC------TTACTTCTGAATCATCCCTGTTAGAT-----TCATTCTAGTTGTGACCAGGAGGA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28775996 161 -  39895921 TCCCTTTCCTGCTCCTAACACACCAATATCCATAGGCTACACT---------ATGTGTCTAGGGCTAATCCTGACCTATGGCAGAAGGGATTGAAAGACCTCATTTTTTGAAGTT------GTATTCATGCATCACCTCTGATAGTTGTAGAGTATTCCTGTAATAATTATGAGAC
i canFam3.chr31                I 4 I 1890
s dasNov3.JH568778               6667595 145 +   6883506 TCCCT------------------CTTCCCCACTCTCCCACTCCCACACCCACACATACCTA----TACTCTTGACCTATAGCAGAAGGGATGTAAGAA-----CTTTTA--AATCGAATATTTATTTCCACATCACCTCTGACAGTCATGGAGCATTCTATTTGTGATCATGGC--
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853901 1396 -  47401472 I
e nasLar1.chr2                    133354 299 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               70865 701 -     87482 I

a score=1036897.000000
s hg38.chr14_GL000009v2_random    158370 112 +    201709 TACCTCCTCTTGTTTCCAGTCCCATGCTCGTTTTCTCTATCACATTCTACCTTGTAATAACCTAAATCTTCTGGTGGGCAAGCTTCTTCCTCAATCAAATTTGTGTTTATGA
s panTro5.chr9                  41848670 112 + 116767853 TACCTCCTTTTGTTTCCAGTCCCATGCTCTTTTTCTCTATCACATTCTACCTTGTAATAACCTAAATCTTCTGGTGGGCAAGCTTCTTCCTCAATCAAATTTGTGTTTATGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809807 112 + 205426864 TACCTCCTTTTATTTCCAGTCCCATGCTCATTTTCTCTATCACATTCTACCTTGTAATAACCTACATCTTCTGGTGGGCAAGCTTCTTCCTCAAACAAATTTGTGTTTATGA
i panPan2.chr3                 C 0 I 16
s gorGor5.CYUI01000160v1          219125 112 +    245036 TACCTCCTTTTGTTTCCAGTCCCATGCTCGTTTTCTCTATCACATTCTACCTTGTAATAACCTAAATCTTCTGGTGGGCAAGCTTCTTCCTCAAACAAATTTGTGTTTATGA
i gorGor5.CYUI01000160v1       C 0 I 16
s nomLeu3.chr21                 42095371 112 -  86207423 TTCCTCCTTTTGTTTCCAGTCCCATGTTCGTTTTCTCTATCACATTCTACCTTGTAATAACCTAAATCTTCTGGTGGGCAAGCTTCTTCCTCAATCCAATTTGTGTTTATGA
i nomLeu3.chr21                C 0 I 4
s rheMac8.chr2                 204252325 111 - 204787373 TACCTCCTTTTGTTTTCAGTCCTATGCTCTTTTTCTCTATCATATTCTACCTTGTAATAA-CTAAATATTCAGGTGGGCAAGCTTCTTCCTCAATCAAATTTGTGTTTATGA
i rheMac8.chr2                 C 0 I 4
s macFas5.chr2                    151540 111 - 192460366 TACCTCCTTTTGTTTTCAGTCCTATGCTCTTTTTCTCTATCATATTCTACCTTGTAATAA-CTAAATCTTCAGGTGGGCAAGCTTCTTCCTCAATCAAATTTGTGTTTATGA
i macFas5.chr2                 C 0 I 4
s macNem1.NW_012010856v1          171041 111 -  11645122 TACCTCCTTTTGTTTTCAGTCCTATGCTCTTTTTCTCTATCATATTCTACCTTGTAATAA-CTAAATCTTCAGGTGGGCAAGCTTCTTCCTCAATCAAATTTGTGTTTATGA
i macNem1.NW_012010856v1       C 0 I 4
s cerAty1.NW_012001605v1          156348 112 -   6739814 TACCTCCTTTTGTTTTCAGTCCTACGCTCTTTTTCTCTATCATATTCTACCTTGTAATAACCTAAATCTTCAGGTGGGCAAGCTTCTTCCTCAATCAAATTTGTGTTTATGA
i cerAty1.NW_012001605v1       C 0 I 4
s chlSab2.chr22                    46097 112 - 101219884 TACCTCCTTTTGTTTTCAATCCTATGCTCTTTTTCTCTATCATATTCTACCTTGTAATAACCTAAATCTTCAGGTGGGCAAGCTTCTTCCTCAATCAAATTTGTGTTTATGA
i chlSab2.chr22                C 0 I 4
s manLeu1.NW_012099043v1          168496 112 -    785044 TACCTCCTTTTGTTTTCAGTCCTACGCTCTTTTTCTCTATCATATTCTACCTTGTAATAACCTAAATCTTCAGGTGGGCAAGCTTCTTCCTCAATCAAATTTGTGTTTATGA
i manLeu1.NW_012099043v1       C 0 I 4
s colAng1.NW_012123820v1           57354 112 -  10971483 TAACTCCTTTTGTTTTCAGTCCTATGCTCTTTTTCTCTGTCATATTCTACCTTGTAGTAACGTAAATCTTCAGGTGGGCAAGCTCCTTCCTCAATCAAATTTGTGTTTATGA
i colAng1.NW_012123820v1       C 0 I 4
s saiBol1.JH378168              10918072 109 -  13128814 TACCTTATTTTGTTTCCAGTCTAA-GCTCTGTT--TCTGTCACATTCTACGCTGTAATAACCTAAGTCTTCTGGTGGGCAAGCTTCATCCTTAATCGAATTCGTATTTATGA
i saiBol1.JH378168             C 0 I 4
s cebCap1.NW_016107322v1         7646459 111 +  14377064 TACCTTCTTTTGTTTCCACTCTGA-GCTCTTTTTCTCTGTCACATTCTACCCTGTAATAACCTAAGTCTTCTGCTGGGCAAGCTTCTTCCTCAATCAAATTCTTATTTATGA
i cebCap1.NW_016107322v1       C 0 I 4
s aotNan1.NW_018487195v1         4110475 111 -   9889416 TACCTTATTTTGTTTCCAGTCTGA-GCTCTTTTTCTCTATCACAGTCTACCGTATAATAACCTAAGTCTTCTGGTGGGCAAGCTTCTTCCTCAATCAAATTCGTATTTATGA
i aotNan1.NW_018487195v1       C 0 I 4
s otoGar3.GL873528              20737398 111 +  38779656 AACC-CCACTTGTGTCCAGTCTTGTGCTGTTTTTCTCTACCATGTTCTACCTTATAATTACCTCAGTGTTCTGGTAAGTCATCTTCTTACTCAATTAAATGCGTGTTTCTGA
i otoGar3.GL873528             C 0 I 4
s dasNov3.JH568778               6667740 110 +   6883506 CTACTCAACTTGCTTCTGACCTCATGTACTTTTTCTTTACTGTTTTCTACCATATAATCACCTCAGTATTCTGGTAAGCAAGTTTCTGCCCCAGTTAAACTTATGAATTC--
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853901 1396 -  47401472 I
e nasLar1.chr2                    133354 299 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e tarSyr2.KE928251v1               70865 701 -     87482 I

a score=88526.000000
s hg38.chr14_GL000009v2_random    158482 12 +    201709 TTGTGTTGGGGA
s panTro5.chr9                  41848782 12 + 116767853 TTGTGTTGGGGA
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42095487 12 -  86207423 CTGCTTTGGGGA
i nomLeu3.chr21                I 4 C 0
s rheMac8.chr2                 204252440 12 - 204787373 CTGCTTTGGGGA
i rheMac8.chr2                 I 4 C 0
s macFas5.chr2                    151655 12 - 192460366 CTGCTTTGGGGA
i macFas5.chr2                 I 4 C 0
s macNem1.NW_012010856v1          171156 12 -  11645122 CTGCTTTGGGGA
i macNem1.NW_012010856v1       I 4 C 0
s cerAty1.NW_012001605v1          156464 12 -   6739814 CTGCTTTGGGGA
i cerAty1.NW_012001605v1       I 4 C 0
s chlSab2.chr22                    46213 12 - 101219884 CTGCTTTGGGGA
i chlSab2.chr22                I 4 C 0
s manLeu1.NW_012099043v1          168612 12 -    785044 CTGCTTTGGGGA
i manLeu1.NW_012099043v1       I 4 C 0
s colAng1.NW_012123820v1           57470 12 -  10971483 CTGCTTTGGGGA
i colAng1.NW_012123820v1       I 4 C 0
s saiBol1.JH378168              10918185 12 -  13128814 CTGCTTTGGGGA
i saiBol1.JH378168             I 4 C 0
s cebCap1.NW_016107322v1         7646574 12 +  14377064 CTGCTTTGGGGA
i cebCap1.NW_016107322v1       I 4 C 0
s aotNan1.NW_018487195v1         4110590 12 -   9889416 CTGCTTTGGGGA
i aotNan1.NW_018487195v1       I 4 C 0
s otoGar3.GL873528              20737513 12 +  38779656 CCACGTTGGCTA
i otoGar3.GL873528             I 4 C 0
s dasNov3.JH568778               6667850 12 +   6883506 CTGTTTTCGTAA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853901 1396 -  47401472 I
e nasLar1.chr2                    133354 299 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e panPan2.chr3                  77809919 16 + 205426864 I
e tarSyr2.KE928251v1               70865 701 -     87482 I
e gorGor5.CYUI01000160v1          219237 16 +    245036 I

a score=78471.000000
s hg38.chr14_GL000009v2_random    158494 11 +    201709 TTGGCATAGTA
s panTro5.chr9                  41848794 11 + 116767853 TTGGCTTAGTA
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42095499 11 -  86207423 TTGGCTTAGTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252452 11 - 204787373 TTGGCCTAGTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151667 11 - 192460366 TTGGCCTAGTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171168 11 -  11645122 TTGGCCTAGTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156476 11 -   6739814 TTGGCCTAGTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46225 11 - 101219884 TTGGCCTCGTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168624 11 -    785044 TTGGCCTAGTA
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    133653 11 + 181502896 TTGGCTTAGTA
i nasLar1.chr2                 I 299 I 843
s colAng1.NW_012123820v1           57482 11 -  10971483 TTGGCTTAGTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918197 11 -  13128814 TTGGTTTAGTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646586 11 +  14377064 TTGATTTAGTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110602 11 -   9889416 TTGGTTTAGTA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20737525  8 +  38779656 TCAGTTTA---
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6667862 11 +   6883506 CTGATGTATTA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853901 1396 -  47401472 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e panPan2.chr3                  77809919 16 + 205426864 I
e tarSyr2.KE928251v1               70865 701 -     87482 I
e gorGor5.CYUI01000160v1          219237 16 +    245036 I

a score=745564.000000
s hg38.chr14_GL000009v2_random    158505 88 +    201709 ATCCAGGTACTGCTACTGCCTTGAAAG-CGGAGACTGCATCCTTCTGTCTGGATATCT-----TGAGTTTCTGGATTGTAAACCTTATTAGGGT-
s panTro5.chr9                  41848805 88 + 116767853 ATCCAGGTACTGCTACTGCCTTGAAAG-CAGAGACTGCATCCTTCTGTCTGGATTTCT-----TGAGTTTCTGGATTGTAAACCATATTAGGGC-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77809935 88 + 205426864 ATCCAGGTATTGCTACTGCCTTGAATG-AGGAGACTGCGTCCTTCTGTCTGGATTTCT-----TGAGTTTCTGGATGGTAAACCATATTAGGGC-
i panPan2.chr3                 I 16 C 0
s gorGor5.CYUI01000160v1          219253 87 +    245036 ATCCAGGTATTGCTACTGCCTTGAATG-AGGAGACT-CATCCTTCTGTCTGGATTTCT-----TGAGTTTCTGGATAGTAAACCTTATTAGGGC-
i gorGor5.CYUI01000160v1       I 16 C 0
s nomLeu3.chr21                 42095510 88 -  86207423 ATCCAGGTATTGCTACTGCCTTGAATG-CGGAGACTGCATCCTTCTGTCTGGATTTCT-----TGAGTTTCTTGATCGTAAACCTTATTAGGGC-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252463 90 - 204787373 ATCAAGGTATTGCTACTGCCTTGAATT-CTCAGACTGCATCCTTCTCTCTGGATTTCTT---CTGAGTTTCTGGATCGTAAACATTATTAGGGC-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151678 90 - 192460366 ATCAAGGTATTGCTACTGCCTTGAATT-CTCAGACTGCATCCTTCTGTCTGGATTTCTT---CTGAGTTTCTGGATCGTAAACCTTATTAGGGC-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171179 90 -  11645122 ATCAAGGTATTGCTACTGCCTTGAATT-CTCAGACTGCATCCTTCTGTCTGGATTTCTT---CTGAGTTTCTGGATCGTAAACCTTATTAGGGC-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156487 90 -   6739814 ATCAAGGTATTGCTACTGCCTTGAATT-CTCAGACTGCATCCTTCTGTCTGGATTTCTT---CTGAGTTTCTGGATCGTAAACCTTAGTAGGGC-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46236 90 - 101219884 ATCAAGGTATTGCCACTGCCTTGAATT-CTCAGACTGCATCCTTCTGTCTGGATTTCTT---CTGAGTTTCTGGATCGTAAACCTTATTAGGGC-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168635 90 -    785044 ATCAAGGTATTGCTACTGCCTTGAATT-CTCAGACTGCATCCTTCTGTCTGGATTTCTT---CTGAGTTTCTGGATCGTAAACCTTAGTAGGGC-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57493 90 -  10971483 ATCAAGGTATTACTACTGCCTTGAATT-CTCAGACTGCATCCTTCTGTCTGGATTTCTT---CTGAGTTTCTGGATTGTAAACCTTATTAGGAC-
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918208 90 -  13128814 ATCCAGGTATTGCTACCGCCTAGAATG-CTCAGACTGCATCCTTCTGTATGGACTTCTT---TGGAGTTTCTGAATCATAAACCTGATTAGGGC-
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646597 90 +  14377064 ATCCAGGTATTGCTACTGCCTAGAATG-CTCAGACTGCATCCTTCTGTCTGGACTTCTT---TGAAGTTTCTGGATCATAAACCTTATTAGGGC-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110613 90 -   9889416 ATCTAGGTATTGCTACTGCCTAGAATG-CTCAGACTGCCTCCTTCTGTCTGGACTTCTT---TGGAGTTTCTGGATCATAAACCTTATTAGGGC-
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20737533 93 +  38779656 ATCCAGTTACTCTCACAGCCTTGGATGCCCCAGCATGCAGCCTGCTGTATCGGTTTCTTCTCCTGACTTT-TAAATTCTAGACCTTCTTAGGGC-
i otoGar3.GL873528             C 0 I 1
s dasNov3.JH568778               6667873 91 +   6883506 -GCCCAGTTTTCTCAATGTTTTGAATGTTTCAGAGTGGATGCTTCTCCTTTGGCTTCCC---CTGAGTGTTTGAATTATAAAACTTCCCAGTAAC
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853901 1396 -  47401472 I
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e tarSyr2.KE928251v1               70865 701 -     87482 I

a score=-28624.000000
s hg38.chr14_GL000009v2_random    158593 2 +    201709 -C-C
s panTro5.chr9                  41848893 2 + 116767853 -C-C
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810023 2 + 205426864 -C-C
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          219340 2 +    245036 -C-C
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095598 2 -  86207423 -T-C
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252553 3 - 204787373 -CTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151768 3 - 192460366 -CTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171269 3 -  11645122 -CTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156577 3 -   6739814 -CTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46326 3 - 101219884 -CTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168725 3 -    785044 -CTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57583 3 -  10971483 -CTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918298 3 -  13128814 -TCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646687 3 +  14377064 -CCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110703 3 -   9889416 -CCT
i aotNan1.NW_018487195v1       C 0 C 0
s tarSyr2.KE928251v1               71566 1 -     87482 ---C
i tarSyr2.KE928251v1           I 701 I 13935
s otoGar3.GL873528              20737627 1 +  38779656 -C--
i otoGar3.GL873528             I 1 I 1
s dasNov3.JH568778               6667964 2 +   6883506 CC--
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853901 1396 -  47401472 I
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I

a score=518344.000000
s hg38.chr14_GL000009v2_random    158595  65 +    201709 ATTTTTCCT-AGAATTGGAGCCTGTACTTTGTTCTTGCTAC-TTT---------------------------------------------AGTTCACCCAGAAA-GCACGATC
s panTro5.chr9                  41848895  65 + 116767853 ATTTTTCCT-AGAATTGGAGCCTCTACTTTGTTCTTGCTAC-TTT---------------------------------------------AGTTCACCCAGAAA-GCACGATC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810025  65 + 205426864 ATTTTTCCT-AGAATTGGAGCCTCTACTTTGTTCTTGCTAC-TTT---------------------------------------------AGTTCACCCAGAAA-ACATGAAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          219342  64 +    245036 ATTTTT-CT-AGAATTGGAGCCTCTACTTTGTTCTTGCTAC-TTT---------------------------------------------AGTTCACCCAGAAA-GCACGAAC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095600  65 -  86207423 CTTTTTCCT-AGAATTGGAGCCTCTACTTTGTTCTTGCTAC-TTT---------------------------------------------AGTTCACCCAGAAA-GCGTGATC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252556  65 - 204787373 ATTTTTCCT-AGAATTGGAG-CTCTCCTTTGTTCTTGCTAC-TTT---------------------------------------------AGTTCACCCAGAAAGGCATGATC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151771  65 - 192460366 ATTTTTCCT-AGAATTGGAG-CTCTCCTTTGTTCTTGCTAC-TTT---------------------------------------------AGTTCACCCAGAAAGGCATGATC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171272  65 -  11645122 ATTTTTCCT-AGAATTGGAG-CTCTCCTTTGTTCTTGCTAC-TTT---------------------------------------------AGTTCACCCAGAAAGGCATGATC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156580  65 -   6739814 ATTTTTCCT-GGAATTGGAG-CTCTCCTTTGTTCTTGCTAC-TTT---------------------------------------------AGTTCACCCAGAAAGGCATGATC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46329  65 - 101219884 ATTTTTCCT-AGAATTGAAG-CTCTCCTTTGTTCTTGCTAC-TTT---------------------------------------------AGTTCACCCAGAAAGGCATGATC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168728  65 -    785044 ATTTTTCCT-GGAATTGGAG-CTCTCCTTTGTTCTTGCTAC-TTT---------------------------------------------AGTTCACCCAGAAAGGCATGATC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57586  65 -  10971483 ATTTTTCCT-AGAATTGGAG-CTCTCCTTTGTTCTTGCTAC-TTT---------------------------------------------AGTTCACCCAGAAAGGCATGATC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918301  66 -  13128814 ATTTTTCCT-AGAATTGGAT-CACTACTTTCTTCTTACTACTTTT---------------------------------------------AGTTTACCCAGAGAGGCACCATC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646690  66 +  14377064 ATTTTTCCT-AGAATTAGAT-CACTACTTTCTTCTTGCTACTTTT---------------------------------------------AGTTCACCCAGAGAGGCACCATC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110706  66 -   9889416 ATTTTTCCT-AGAATTGGAT-CACTACTTTCTTCTTGCTACTTTT---------------------------------------------AGTTCACCCAGAGAGGCACCATC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20737629  64 +  38779656 GTTTTCCCTCAGGAATGAAT-CTCCACTTTCTGCTTGCTAG-TTG---------------------------------------------CCTCCACCCATAG--GCCTAATT
i otoGar3.GL873528             I 1 C 0
s dasNov3.JH568778               6667966 108 +   6883506 ACTTTTCCC-AGAACTGGGT-CTCTGCTTTCCTTTTCTTAG-TTTTACACCAAGGGAGTAAAGCCTAATACCTTAGCCTCAAGTACAGACAGAGCATCCAGAGGGCCA--ATC
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30853901 1396 -  47401472 I
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=821067.000000
s hg38.chr14_GL000009v2_random    158660 71 +    201709 TCTGCCTGAATTTCAAAGTGTTGGCTAGTTTAAATATCC-TTTTGTGAGACTTTTGTCTTCCTGCGGGGTGA
s panTro5.chr9                  41848960 71 + 116767853 TCTGCCTGAATTTCAAAGTGTTGGCTAGTTTAAATATCC-TTTTGTGAGACTTTTGTCTTCCTGCGGGGTGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810090 71 + 205426864 TCTGCCTGAATTTCAAAGTGTTGGCTAGTTTAAATATCC-TTTTGTGAGACTTTTGTCTTTCTGCGGGGTGA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          219406 71 +    245036 TCTGCCTGAATTTCAAAGTGTTGGCTAGTTTAAATATCC-TTTTGTGAGACTTTTGTCTTCCTGCGGGGTGA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095665 71 -  86207423 TCTGCCTAAATTTCAAAGTGTTGGCTAGTTTAAATATCC-TTTTGTGAGACTTTTGTCTTCCTGAGGGGTGA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252621 71 - 204787373 TCTGCCTGAATTTCAAAGTGCTGGCTAGTTGAAATATCC-TTTTGTGGGACTTTTGTCTTCTTGTGGGGTGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151836 71 - 192460366 TCTGCCTGAATTTCAAAGTGTTGGCTAGTTTAAATATCC-TTTTGTGGGACTTTTGTCTTCTTGTGGGGTGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171337 71 -  11645122 TCTGCCTGAATTTCAAAGTGTTGGCTAGTTTAAATATCC-TTTTGTGGGACTTTTGTCTTCTTGTGGGGTGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156645 71 -   6739814 TCTGCCTGAATTTCAAAGTATTGGCTAGTTTAAATATCC-TTTTGTGGGACTTTTGTCTTCTTGTGGGGTGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46394 71 - 101219884 TCTGCCTGAATTTCAAAGTGTTGGCTAGTTTAAATATCC-TTTTGTGGGACTTTTGTCTCCTTGTGGGGTGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168793 71 -    785044 TCTGCCTGAATTTCAAAGTGTTGGCTAGTTTAAATATCC-TTTTGTGGGACTTTTGTCTCCTTGTGGGGTGA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57651 71 -  10971483 TCTGCCTGAATTTCAAAGTGTTGGCTAGTTTAAATATCC-TTTTGTGGGACTTTTGTCTTCTTGTGGGGTGA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918367 70 -  13128814 TCTGCCTGAATTTCAAAGTGTTGGCTAGTTTAAGTATCC-TTTTGTGGAAC-TTTGTCTTCCTGTGAGGTGA
i saiBol1.JH378168             C 0 I 1
s cebCap1.NW_016107322v1         7646756 70 +  14377064 TCTGCCTGAATTTCAAAGTGTTGGCTAGTTTAAGTATCC-TTTTGTGGAAC-TTTGTCTTCCTGTGGGGTGA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110772 70 -   9889416 TCTGCCTGAATTTCAAAGTGTTGGCTAGTTTAGGTATTC-TTTTGTGGAAC-TTTGTCTTCCTGTGGGGTGA
i aotNan1.NW_018487195v1       C 0 I 1
s micMur3.chr31                 30855297 71 -  47401472 TCTGCCTGAACTTCAAAGTATTGACTAGTCTAAATGTCCTTTTTGTGGGAC-TTTAACTTCCCGTGGGATGA
i micMur3.chr31                I 1396 C 0
s otoGar3.GL873528              20737693 70 +  38779656 TCTGCCTGAACTTCAAAGTATTGACTGGTCTAAATGTCC-TTTTGTGGGAC-TTTGGTGTCCTGTGGGTTGG
i otoGar3.GL873528             C 0 I 2
s dasNov3.JH568778               6668074 69 +   6883506 TCTGCTTGATTTCCAAAGGCTTGACTACTCCACATTTCC-TTTTGCGGGGC-TTTGACTTCCTGTT-GATGA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=13923.000000
s hg38.chr14_GL000009v2_random    158731 1 +    201709 T
s panTro5.chr9                  41849031 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810161 1 + 205426864 T
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          219477 1 +    245036 T
i gorGor5.CYUI01000160v1       C 0 C 0
s ponAbe2.chr21_random           3352363 1 +   4212913 T
i ponAbe2.chr21_random         N 0 N 0
s nomLeu3.chr21                 42095736 1 -  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252692 1 - 204787373 T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151907 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171408 1 -  11645122 T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156716 1 -   6739814 T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46465 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168864 1 -    785044 T
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57722 1 -  10971483 T
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918438 1 -  13128814 T
i saiBol1.JH378168             I 1 C 0
s cebCap1.NW_016107322v1         7646826 1 +  14377064 T
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4110843 1 -   9889416 T
i aotNan1.NW_018487195v1       I 1 C 0
s otoGar3.GL873528              20737765 1 +  38779656 T
i otoGar3.GL873528             I 2 C 0
s dasNov3.JH568778               6668143 1 +   6883506 T
i dasNov3.JH568778             C 0 I 4
e micMur3.chr31                 30855368 0 -  47401472 C
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=1031985.000000
s hg38.chr14_GL000009v2_random    158732  97 +    201709 TTTTTTATCTTACCTATCATTGCTAATCTTTTTACCTTGAATGTAATTGAAATAG-----TTTTAATCTGTGTTA----CCAGCAACAAGA---ACCCCTTTTATGAGA
s panTro5.chr9                  41849032  97 + 116767853 TTTTTCATCTTACATACCATTGCTAATCTTTTTATCTTGAATGTAATTGAAATAG-----TTTTAATCTGTGTTA----CCAGCAACAAGA---ACCCTTTTTATGAGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810162  97 + 205426864 TTTTTCATCTTACATACCATTGCTAATCCTTTTATCTTGAATGTAATTGAAATAG-----TTTTAATCTGTGTTA----CCAGCAACAAGA---ACCCCTTTTATGAGA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          219478  97 +    245036 TTTTTCATCTTACATACCATTGCTAATCCTTTTATCTTGAATGTAATTGAAATAG-----TTTTAATCTGTGTTA----CCAGCAACAAGA---ACCCCTTTTATGAGA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095737  96 -  86207423 TTTTTCATCTTACATACAATTGCTAATCCTTTTATCTTGAATGTAATTGAAATAG------TTTAATCTGTGTTA----CCAGCAACAAGA---ACCCCTTTTATGAGA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252693  97 - 204787373 TTTTTCATCTTAGATACCATTGTTATTCCTTTTATCTTGAATGTAATTGAAGTAG-----TTTTAATCTGTGTTA----CCAACACCAAGA---ATCCCTTTTATGAGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    151908  97 - 192460366 TTTTTCATCTTAGATACCATTGTTATTCCTTTTATCTTGAATGTAATTGAAATAG-----TTTTAATCTGTGTTA----CCAACACCAAGA---ATCCCTTTTATGAGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171409  97 -  11645122 TTTTTCATCTTAGATACCATTGTTATTCCTTTTATCTTGAATGTAATTGAAATAG-----TTTTAATCTGTGTTA----CCAACACCAAGA---ATCCCTTTTATGAGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156717  97 -   6739814 TTTTTCATCTTAGATACCATTGCCATTCCTTTTATCTTGAATGTAATTGAAATAG-----TTTTAATCTGTGTTA----CCAACACCAAGA---ATCCCTTTTATGAGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46466  97 - 101219884 TTTTTCATCTTAGATACCATTGCTATTCCTTTTATCTTGAATGTAATTGAAATAG-----TTGTAATCTGTGTTA----CCAACACCAAGA---ATCCCTTTTATGAGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168865  97 -    785044 TTTTTCATCTTAGATACCATTGCTATTCCTTTTATCTTGAATGTAATTGAAATAG-----TTGTAATCTGTGTTA----CCAACACCAAGA---ATCCCTTTTATGAGA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57723  97 -  10971483 TTTTTCATCTCAGACACCATTGCTATTCCTTTTATCTTGAATGTAATTGAAATCG-----TTTTAATTTGTGTTA----CCAACACCAAGA---ATCCCTTTTATGAGG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918439  96 -  13128814 TTTTTCTTCTTATGTACCACTGTTAATCCTCTTATCTTGAA-GTAATTGAAATAG-----TTTTAATCTGTGTTA----CTAGCACCAAGA---ACACCTTTTATAAGA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7646827  97 +  14377064 TTTTTCTTCTTACATACCACTGTTAAACCTCTTATCTTGAATGTGATTGAAATAG-----TTTTAATCTGTGTTA----CCAGCACCAAGA---ACCCCTTTTATGAGA
i cebCap1.NW_016107322v1       C 0 I 6
s aotNan1.NW_018487195v1         4110844  97 -   9889416 TTTTTCATCTTACATACCACTGTTAATCCTCTTATCTTGAATATAATTGAAATAG-----TTTTAATCTGTGTTA----CCAGCACCAAGA---ACCCCTTTCATGAGA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30855368 101 -  47401472 TTTTTCATCTTACATACCAGTGCTAATCCTTTCATCTTGAATGTAATTTAAATAG-----TTTTAATCTCTATTACTTCCCAGTAGCAAGG---ACCCTTTTCATGTGA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20737766 101 +  38779656 TTTTTCATCTTACATATCAGTACCAATCCTTTCATCTTGTAGTTAATTTAAATAG-----TTTTAATCTCTATTACTTCCCAGTAGCAAAG---CCCCTTTGTATGAGA
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6668148 106 +   6883506 TTTTTCCTTTTAGACACCATTGCCAATCCTCTT-CCTTGAATGTAATTAAAACAAGTATTTATCTATCTATGTTACTTCCCAGTAGCAAGGGGTACTCTTTATCTGT--
i dasNov3.JH568778             I 4 C 0
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=45407.000000
s hg38.chr14_GL000009v2_random    158829 7 +    201709 ---TGAAGAG
s panTro5.chr9                  41849129 7 + 116767853 ---TGAAGAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810259 7 + 205426864 ---TGAAGAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          219575 7 +    245036 ---TGAAGAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095833 7 -  86207423 ---TGGAGAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252790 7 - 204787373 ---TGGAGAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    152005 7 - 192460366 ---TGGAGAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171506 7 -  11645122 ---TGGAGAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156814 7 -   6739814 ---TGGAGAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46563 7 - 101219884 ---TGGAGAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168962 7 -    785044 ---TGGAGAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57820 7 -  10971483 ---TGGAGAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918535 7 -  13128814 ---CGGGGAA
i saiBol1.JH378168             C 0 C 0
s aotNan1.NW_018487195v1         4110941 7 -   9889416 ---TGGGGAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30855469 7 -  47401472 ---TGTTGAA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20737867 7 +  38779656 ---TGCTGAC
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6668254 7 +   6883506 TCCTGAA---
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=1209008.000000
s hg38.chr14_GL000009v2_random    158836 144 +    201709 GCCAGGTCAGTCTCATAACGTGTGTCCC--CCTCCGTGTGTTGAATTTATGTCAGAGCCAGGTTCTTTCCTATTTGATGTCTCTCACCAAATTCC--AGTGTTTA-----TGTCCTAGGAGGTGCCCAAT---AAATTCTAGAGTTGATACAAGCT
s panTro5.chr9                  41849136 144 + 116767853 GCCAGGTCAGTCTCATAACATGTGTCCC--CCTCCGTGTGTTGAATTTATGTCAGAGCCAGGTTCTTTCCTATTTGATGTCTCTCACCAAATTCC--AGTGTTTA-----TGTCCTAGGAGGTGCCCAAT---AAATTCTAGAGTTGATACAAGCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810266 144 + 205426864 GGCAGGTCAGTCTCATAACATGTGTCCC--CCTCCTTGTGTTGAATTTATGTCAGAGGCAGGCTCTTTCCTGTTTGATGTCTCTCACCAAATTCC--AGTGTTTA-----TGTCCTAGGAGGTGCCCAAT---AAATTCTAGAGTTCATACAAGCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          219582 144 +    245036 GGCAGGTCAGTCTCATAACATGTGTCCC--CCTCCGTGTGTTGAATTTATGTCCGAGCCAGGCTCTTTCCTATTTGATGTCTCTCACCAAATTCC--AGTGTTTA-----TGTCCTAGGAGGTGCCCAAT---AAATTCTAGAGTTGATACAAGCT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095840 144 -  86207423 GGCAGGTCAGTCTCATAACATGTGTCCC--CCTCTGTGTGTTGAATTTATGTCAGAGCCAGGCTCTTTCCTACCTGATGTCTCTCACCAAATTCC--AGTGTTTA-----TGTCCTAGGAGGTGCCCAAT---AAATTCTAGAGTTGATACAAGCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252797 144 - 204787373 GGCAGGTTAGTCTCATAGCACGTGTCCC--CCTCCATGTGTTGAATTTATGTCAGAGCTAGGCTCTTTCCAATTCGATTTCTCCCACCAAATTCC--AGTGTTTA-----TGTCCTAGGAGGTGCCCAGT---AAATTCTAGAGTTGATACAAGCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    152012 144 - 192460366 GGCAGGTCAGTCTCATAGCACGCGTCCC--CCTCCATGTGTTGAATTTATGTCAGAGCTAGGCTCTTTCCAATTCGATTTCTCCCACCAAATTCC--AGTGTTTA-----TGTCCTAGGAGGTGCCCAGT---AAATTCTAGAGTTGATACAAGCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171513 144 -  11645122 GGCAGGTCAGTCTCATAGCATGTGTCCC--CCTCCATGTGTTGAATTTATGTCAGAGCTAGGCTCTTTCCAATTCGATTTCTCCCACCAAATTCC--AGTGTTTA-----TGTCCTAGGAGGTGCCCAGT---AAATTCTAGAGTTGATACAAGCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156821 144 -   6739814 GGCAGGTCAGTCTCATAGCACGTGTCCC--CCTCCATGTGTTGAATTTATGTCAGAGCTAGGCTCTTTCCTATTTGATTTCTCCCACCAAATTCC--AGTGTTTA-----TGTCCTAGGAGGTGCCCAAT---AAATTCTAGAGTTGATACAAGCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46570 144 - 101219884 AGCAGGTCAGTCTCATAGCACGTGTCCC--CCTCCATGTGTTGAATTCATGTCAGAGCTAGGCTCTTTCCTATTCGATTTCTCCCACCAAATTCC--AGTGTTTA-----TGTCCTAGGAGGTGCCCAGT---AAATTCTAGAGTTGATACAAGCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          168969 144 -    785044 GGCAGGTCAGTCTCATAGCACATGTCCC--CCTCTATGTGTTGAATTTATGTCAGAGCTAGGCTCTTTCCTATTCGATTTCTCCCACCAAATTCC--AGTGTTTA-----TGTCCTAGGAGGTGCCCAGT---AAATTCTAGAGTTGATACAAGCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57827 144 -  10971483 GGCAAGTCAGTCTCATAGCATGTGTCCC--CCTCCATGTGTTGAGTTTATGTCAGAGCTAGGCTCTTTCCTCTTTGATTTCTCCCACCAAATTCC--AGTGTTTA-----TGTCCTGCGAGGTGCCCAAT---AAATTCTAGAGTTGATACAAGCT
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4110948 144 -   9889416 GTCAGGCTAGTCTCATAACACGTGTCTC--CTTCCATGTGTTGACTTCATCCCAGAGCCAGACTCTTTCCTATTTGATTTCTCTGACCAAATTCC--AGTGTTTA-----TGTCCCAGGAGGTGCCCAAT---AAATTATAGAGTTGATACAAGCT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30855476 144 -  47401472 AGCAGGTCAGTCTCATAGCATGTGTCCT--ACTTCATGTGTAGGCTTTATGCTAGAACCAGACCCTTTCCTCTTTGATCTGTCCCACCAGATTCC--AATGTTCA-----TGTCCCAGGAGCAGCCCAAC---CAATTCTAGGGTTGATATAAGCT
i micMur3.chr31                C 0 I 4648
s otoGar3.GL873528              20737874 143 +  38779656 AGCAGGTCAGTCTCGTCTCGTGTAGCCC--ATTTCACATGTGAACTTTACACTAGAAACAGACTCTTTCCTCTTTCATCTGTCCCACCAAATTCC---ATACTCA-----TGTCTCAGAAGCAGCCCAGT---CAATTTTAGGGTTGATGCAAGCT
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6668261 143 +   6883506 GATGGGTCAGTCCCCCAGTATAAGTCCAAGATGCCCTGTGTAGACTTTATACCAGAACTAGGCCCTTCCCTCTTTG------CCCACCTCATCTCTTGATAATTAGGATCTGTCCCA-------CCCAGTTCCAACTTCTGGAGTTGACACAAGCT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=16905.000000
s hg38.chr14_GL000009v2_random    158980 2 +    201709 GT
s panTro5.chr9                  41849280 2 + 116767853 GT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810410 2 + 205426864 Gt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          219726 2 +    245036 GT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095984 2 -  86207423 GT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252941 2 - 204787373 GT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    152156 2 - 192460366 GT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171657 2 -  11645122 GT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156965 2 -   6739814 CT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46714 2 - 101219884 GT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          169113 2 -    785044 GT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57971 2 -  10971483 GT
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4111092 2 -   9889416 GT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20738017 2 +  38779656 GT
i otoGar3.GL873528             C 0 I 3558
s dasNov3.JH568778               6668404 2 +   6883506 GT
i dasNov3.JH568778             C 0 I 3390
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=18834.000000
s hg38.chr14_GL000009v2_random    158982 3 +    201709 AAT
s panTro5.chr9                  41849282 3 + 116767853 AAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810412 3 + 205426864 aat
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          219728 3 +    245036 AAT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095986 3 -  86207423 AAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252943 3 - 204787373 AAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    152158 3 - 192460366 AAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171659 3 -  11645122 AAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156967 3 -   6739814 ACT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46716 3 - 101219884 AAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          169115 3 -    785044 AAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57973 3 -  10971483 AAT
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4111094 3 -   9889416 AAT
i aotNan1.NW_018487195v1       C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e dasNov3.JH568778               6668406 3390 +   6883506 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=862640.000000
s hg38.chr14_GL000009v2_random    158985 139 +    201709 TTTAG-----------AGAAATTAAATT----------------------------------------------------------------------------------AGCAAGTAGATTTAGATTATATACAACCTAATCAAC---TTTTTTTTT--TTT----------CCTGAGGATGACCAAGATTTGGGCTTCAGTGACAATAGTTATCCCCTAAATATTTATACTC--AATctaggatcac
s panTro5.chr9                  41849285 138 + 116767853 TTTAG-----------ACAAATTAAATT----------------------------------------------------------------------------------AGCAGGTGGAATTAGATTATATACAACCTAATCAAC---TTTTTTTTT--T-------------CTGAGGGTGACCAAGATTTGGGCTTCAGTGACAATAGTTGTCCCCTAAATATTTATACTCAAAATctaggatcac
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810415 197 + 205426864 tttag-----------agaaattaaattaagttgcttaatttaatttaatttaagcgacttttgcttaaattaagcaac-----ttaatttCTCTAAAATTAAGC-CCAAAGCAAGTAGAATTAGATTATATACAACCTAATCAAC---CTTTTTCTT--T------------------------------TTGGGCTTCAGTGACAATAGTTGTCCCCTAAATATTTATACTCAAAATctaggatcac
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          219731 230 +    245036 TTTAG-----------AGAAATTAAGTT--GCTTAAtaatttaatttaatttaagcaacttttgcttaaattaagcaacttaatttaatttCTCTAAAATTAAGC-CCAAAGCAAGTAGAATTAGATTATATACAACCTAATCAAC---ttttttttt--ttttttttttttCCCTGAGGATGACCAAGATTTGGGCTTCAGTGACAATAGTTGTCCCCTAAATATTTATACTCAAAATctaggatcac
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42095989 208 -  86207423 TTTAG-----------AGAAATTCAATT---------------AAGTTGTTTAAGCAAAAGTTGCTTAAATTAAGCAACTTAATTGAATTTCTCTAAAATTAAGC-CCAAAGCAAGTAGAATTAGATTATATACAACCTAATCAAC---TTCTTTTTT--TTTTT---------CTGAGGATGACCAAGATTTGGGCTTCAGTGACAACAGTTGTCCCCTAAATATTTATACTCAAAATctggaatcac
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204252946 193 - 204787373 TTTAGCaatttaatttagaaattaaatt--------------------------------------------aagcaacttaatttaatttCTCTAAAATTAAGC-CCAAAACAAGTAGAATTAGATTGTATACAACCTAATCAACATTTTTTTTTTT--TTTTC---------CTGAGAATGACCAATATTTGGGCTTCAGTGACAATAGTTGTCCCCTAAACATTCATACTCAAAATctaggatcac
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    152161 193 - 192460366 TTTAGCaatttaatttagaaattaaatt--------------------------------------------aagcaacttaatttaatttCTCTAAAATTAAGC-CCAAAACAAGTAGAATTAGATTGTATACAACCTAATCAACATTTTTTTTTTT--TTTTC---------CTGAGAATGACCAATATTTGGGCTTCAGTGACAATAGTTGTCCCCTAAACATTCATACTCAAAATctaggatcac
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171662 193 -  11645122 TTTAGCaatttaatttagaaattaaatt--------------------------------------------aagcaacttaatttaatttctctaaaattaagc-ccaaaacaattagaattagattGTATACAACCTAATCAACATTTTTTTTTTT--TTTTC---------CTGAGAATGACCAATATTTGGGCTTCAGTGACAATAGTTGTCCCCTAAACATTCATACTCAAAATctaggatcac
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          156970 159 -   6739814 TTTGGC---------------------------------------------------------------------------AATTTAATTTCTCTAAAATTAAGC-CCAAAACAAGTAGAATTAGATTGTATACAACCTAATCAAC---TTTTTTTTT--TTTTT---------CTGAGAATGACCAAGATTTGGGCTTCAGTGACAATAGTTGTCCCCTAAACATTCATACTCAAAATctaggatcac
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46719 192 - 101219884 TTTAGCaatttaatttagaaattaaatt--------------------------------------------aagcaacttaatttaatttCTCTAAAATTAAGC-CCAAAACAAGTAGAATTAGATTGTATACAACCTAATCAAC---TGTTTTTTTCCCCCCC---------CTGAGAATGACCAAGATTTGGGCTTCAGTGACAATAGTTGTCCCCTAAACATTCATACTCGAAATctaggatcac
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          169118 190 -    785044 TTTAGCaatttaatttagaaattaaatt--------------------------------------------aagcaacttaatttaatttCTCTAAAATTAAGC-CCAAAACAAGTAGAATTAGATTGTATACAACCTAATCAAC---TTTTCTTTT--CCCCC---------CTGAGAATGACCAAGATTTGGGCTTCAGTGACAATAGTTGTCCCCTAAACATTCATACTCAAAATctaggatcac
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           57976 161 -  10971483 TTTAGC---------------------------------------------------------------------------AATTTAATTTCTCTAAAATTAGGC-CCAAAACAAGTAAAATTAGATTGTATACAACCTAATCAACTTTTTTTTTTTT--TTTTC---------CTGAG-ATGACCAAGATTTGGGCTTCAGTGACAATAGTTGTCCCCTAAACATTCATACTCAAAATCTAGGATCAC
i colAng1.NW_012123820v1       C 0 I 2414
s aotNan1.NW_018487195v1         4111097 174 -   9889416 TTTAG-----------AGAAATTAAGTT-------------------------------------------------GCTGAATTTAATTTCTCTAAAATTAAGC-CCAAAGCAAGTAGAATTAGATTGTATATAACCTAATCACC---TTTTTTTTT--TTTTT---------CTGAGGATGACCAGGATTTGGGCTTCAGTGACTATAGTTGCCTCCTAAATATTCATGCTCAAAATctgggatcac
i aotNan1.NW_018487195v1       C 0 C 0
s dasNov3.JH568778               6671796 165 +   6883506 TTTAG-----------AGAAATGAAATT---------------------------------------------------------CAGTTGTTTAGAAAGTATACaatataataattaaaa-aaaattttttttGCTTTACTTTCT---CTTTTTCTT--CCCCA---------CCCCCGCCCCCCAAGGGTTAAACCTTAATGACAATAGTTTTTCCCT-AACATTCATATTCAAGCTctaggaccaa
i dasNov3.JH568778             I 3390 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=664586.000000
s hg38.chr14_GL000009v2_random    159124 115 +    201709 cagtaaaatgttgaatagagatgatga--acacacacatccttttcttgtcctaatctatgtggtttaaacatttacgctttcacaattaaatataatattgtttatatgttttgtt
s panTro5.chr9                  41849423 115 + 116767853 cagtacaatgttgaatagaggtgatga--acacacacatccctttcttgtcctaatctatgtggtttaaacatttatgctttcaccattaaatataatattgtttatatgttttgtt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810612 115 + 205426864 cagtacaatgttgaatagaggtgatga--acacacacatccttttcttgtcctaatctatgtggtttaaacatttacgctttcacccttaaatgtaatattgtttatatgttttgtt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          219961 117 +    245036 cagtacaatgttgaatagaggtgatgaacacacacacatccttttcttgtcctaatctatgtggtttaaacatttacgctttcacccttaaatataatattgtttatatgttttgtt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42096197 115 -  86207423 cagtacaattttgaatagaggtgacga--acacacacatccttttcttgtcctaatctatgtggtttaaacatttacgctttcaccattaaatataatattgtttatatgttttgtt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204253139 115 - 204787373 cggtacaatgttgaatagaggtgaaga--acacacacatccttttcttgtcctaatctatgtggtttaaacatttaggatttcaccattaaatatagtattgtttatgtgttttgtt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    152354 115 - 192460366 cggtacaatgttgaatagaggtgaaga--acacacacatccttttcttgtcctaatctatgtggtttaaacatttaggatttcaccattaaatatagtattgtttatgtgttttgtt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          171855 115 -  11645122 cggtacaatgttgaatagaggtgaaga--acacacacatccttttcttgtcctaatctatgtggtttaaacatttaggatttcaccattaaatatagtattgtttatgtgttttgtt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          157129 115 -   6739814 cggtacaatgttgaataaaggtgatga--acacacacatccttttcttgtcctaatctatgtgatttaaagatttaggatttcaccattaaatataatattgtttatgtgttttgtt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    46911 115 - 101219884 cggtacaatgttgaatagaggtgatga--acacacacatccttttcttgtcctaatctatgtggtttaaacatttaggatttcaccattaaatataatattgtttatatgttttgtt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          169308 115 -    785044 cggtacaatgttgaatagaggtgatga--acacacacatccttttcttgtcctaatctatgtggtttaaacatttaggatttcaccattaaatataatattgtttatatgttttgtt
i manLeu1.NW_012099043v1       C 0 C 0
s aotNan1.NW_018487195v1         4111271 115 -   9889416 cagtacaatgttgaatagaggtaacga--ttacacacatccttttcttgtcctgatgtatatggtttaaacattcaggctttcatcaataaatataatattatttatatgttttgtt
i aotNan1.NW_018487195v1       C 0 I 49
s dasNov3.JH568778               6671961  96 +   6883506 cattataatgttgaataggtataataa--gtataggcattctctccttgtc--------------tcaaacattgagactttcacccttacttatgttattttaggtttgtt-----
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=232529.000000
s hg38.chr14_GL000009v2_random    159239 54 +    201709 gtggttgctttccaccacttcgagaaaatttctttttctagcttgctgagagtt--
s panTro5.chr9                  41849538 52 + 116767853 gtggatagtttccatcacttcgagaaaatttctttttctagcttgctgagag----
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810727 52 + 205426864 gtggatgctttccatccctttgaaaaaatttctttttttagcttgctgagag----
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          220078 52 +    245036 gtggatgctttccatcccttcgagaaaatttctttttctagcttgctgagag----
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42096312 52 -  86207423 gtggacgctttccatcacttcgagaaaacttctttttctagcttgctgagag----
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204253254 52 - 204787373 gtggatgctttccatcactttgagaaaatttctctttctagcttactgagag----
i rheMac8.chr2                 C 0 I 2
s macFas5.chr2                    152469 52 - 192460366 gtggatgctttccatcactttgagaaaatttctctttctagcttactgagag----
i macFas5.chr2                 C 0 I 2
s macNem1.NW_012010856v1          171970 52 -  11645122 gtggatgctttccatcactttgagaaaatttctctttctagcttactgagag----
i macNem1.NW_012010856v1       C 0 I 2
s cerAty1.NW_012001605v1          157244 52 -   6739814 gtggatgctttccatcactttgagaaaatttctctttctagcttgctgagag----
i cerAty1.NW_012001605v1       C 0 I 2
s chlSab2.chr22                    47026 48 - 101219884 gtgaatgctttccatcactttgagaaaatt----tttctggcttgctgagag----
i chlSab2.chr22                C 0 I 7
s manLeu1.NW_012099043v1          169423 48 -    785044 gtggatgctttccaccactttgagaaaatt----tttctggcttgctgagag----
i manLeu1.NW_012099043v1       C 0 I 2
s dasNov3.JH568778               6672057 53 +   6883506 gtagattccctttattattttgaagaaatttat-ttcctcatttggtgggag--tt
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    133664 843 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4111386 49 -   9889416 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e cebCap1.NW_016107322v1         7646924  6 +  14377064 I
e saiBol1.JH378168              10918542  0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=2548.000000
s hg38.chr14_GL000009v2_random    159293 1 +    201709 t
s rheMac8.chr2                 204253308 1 - 204787373 t
i rheMac8.chr2                 I 2 I 39
s macFas5.chr2                    152523 1 - 192460366 t
i macFas5.chr2                 I 2 I 39
s macNem1.NW_012010856v1          172024 1 -  11645122 t
i macNem1.NW_012010856v1       I 2 I 33
s cerAty1.NW_012001605v1          157298 1 -   6739814 t
i cerAty1.NW_012001605v1       I 2 I 18
s manLeu1.NW_012099043v1          169473 1 -    785044 t
i manLeu1.NW_012099043v1       I 2 I 35
s nasLar1.chr2                    134507 1 + 181502896 t
i nasLar1.chr2                 I 843 I 165
s dasNov3.JH568778               6672110 1 +   6883506 t
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4111386 49 -   9889416 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e chlSab2.chr22                    47074 7 - 101219884 I
e nomLeu3.chr21                 42096364 0 -  86207423 C
e panPan2.chr3                  77810779 0 + 205426864 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I
e gorGor5.CYUI01000160v1          220130 0 +    245036 C
e panTro5.chr9                  41849590 0 + 116767853 C

a score=4095.000000
s hg38.chr14_GL000009v2_random    159294 1 +    201709 t
s panPan2.chr3                  77810779 1 + 205426864 t
i panPan2.chr3                 C 0 C 0
s nomLeu3.chr21                 42096364 1 -  86207423 t
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204253348 1 - 204787373 t
i rheMac8.chr2                 I 39 C 0
s macFas5.chr2                    152563 1 - 192460366 t
i macFas5.chr2                 I 39 C 0
s macNem1.NW_012010856v1          172058 1 -  11645122 t
i macNem1.NW_012010856v1       I 33 C 0
s cerAty1.NW_012001605v1          157317 1 -   6739814 t
i cerAty1.NW_012001605v1       I 18 C 0
s chlSab2.chr22                    47081 1 - 101219884 T
i chlSab2.chr22                I 7 C 0
s manLeu1.NW_012099043v1          169509 1 -    785044 t
i manLeu1.NW_012099043v1       I 35 C 0
s dasNov3.JH568778               6672111 1 +   6883506 t
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    134508 165 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4111386 49 -   9889416 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I
e gorGor5.CYUI01000160v1          220130 0 +    245036 C
e panTro5.chr9                  41849590 0 + 116767853 C

a score=12283.000000
s hg38.chr14_GL000009v2_random    159295 3 +    201709 tTT
s panTro5.chr9                  41849590 2 + 116767853 -tt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810780 3 + 205426864 ttt
i panPan2.chr3                 C 0 C 0
s nomLeu3.chr21                 42096365 3 -  86207423 ttt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204253349 3 - 204787373 ttt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    152564 3 - 192460366 ttt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          172059 3 -  11645122 ttt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          157318 3 -   6739814 ttt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    47082 3 - 101219884 TTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          169510 3 -    785044 ttt
i manLeu1.NW_012099043v1       C 0 C 0
s aotNan1.NW_018487195v1         4111435 3 -   9889416 gta
i aotNan1.NW_018487195v1       I 49 C 0
s dasNov3.JH568778               6672112 3 +   6883506 ttt
i dasNov3.JH568778             C 0 I 1363
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    134508 165 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I
e gorGor5.CYUI01000160v1          220130 0 +    245036 C

a score=799095.000000
s hg38.chr14_GL000009v2_random    159298 151 +    201709 TTTTTTTTTAATCAGCaatagatatttctccaaagaaaatatacaaattaccaacaggtacatgaaaaaaatgctcagcatcactaatcatcagggaaatgcaaatcaaaaccacaaagagat-attgcctcaagcctgttagaatggtctt
s panTro5.chr9                  41849592 151 + 116767853 tttTTTTTAAATCAGCGatagatatttctccaaagaaaatatccaaatgaccaacaggtacatgaaaaaaatgctcagcatcactaatcatcagggaaatgcaaatcaaaaccacaaagagat-attgcctcaagcctgttagaatggtctt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810783 151 + 205426864 tTTTTTTTTAATCAGCaatagatatttctccaaagaatatatccaaatgaccaacaggtacctggaaaaaatgcttaacatcactaatcatcagggaaatgcaaatcaaaaccacaaagagat-attgcctcaaacctgttagaatggtctt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          220130 150 +    245036 -tttttttaaatcattaatagatatttctccaaagaatatatccaaatgaccaacaggtacctggaaaaaatgcttaacatcactaatcatcagggaaatacaaatcaaaaccacaaagagat-attgcctcaaacctgttagaatggtctt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42096368 149 -  86207423 tTCTTTTTTAATCAGCaatagatatttctccaaatgaaatatccaaatgaccaacaggtacatgaaaaaaatgctcagcatcactaatcatcagggaaatgcaaatcaaaaccac--agagat-attgcctcaagcctgttagaatgatctt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204253352 151 - 204787373 ttttttttAAATCAGCaatagatatttctccaaagaaaatatccaaatgaccaacaggtacatg-aaacaatgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacgaagagataattgcctcaaacctgttagactggtctt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    152567 151 - 192460366 ttttttttAAATCAGCaatagatatttctccaaagaaaatatccaaatgaccaacaggtacatg-aaacaatgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacgaagagataattgcctcaaacctgttagactggtctt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          172062 151 -  11645122 ttttttttAAATCAGCaatagatatttctccaaagaaaatatccaaatgaccaacaggtacatg-aaacaatgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacgaagagataattgcctcaaacctgttagactggtctt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          157321 151 -   6739814 ttttttttAAATCAGCaatagatatttctccaaagaaaatatccaaatgaccaacaggtacatg-aaacaacgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacaaagagataattgcctcaaacctgttagaatggtctt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    47085 150 - 101219884 TTTTTTTTTAATCAGCaatagatatttctccaaagaaaatatccaaatgaccaacaggtacatg-agacgacgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacaaagagat-attgcctcaaacctgttagactgatctt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          169513 151 -    785044 ttttttttAAATCAGCaatagatatttctccaaagaaaatatccaaatgaccaacaggtacatg-aaacaatgctcaacatcactaatcatcagggaaatgcaaatcaaaaccacaaagagataattgcctcaaacctgttagactggtctt
i manLeu1.NW_012099043v1       C 0 C 0
s aotNan1.NW_018487195v1         4111438 150 -   9889416 tttttTTTAAATCAACaacagacatttctccaaagaaaatatccaaatgaccaaaatgtacatg-aaaacatgctcaacatcactcatcatcagagaaatgcaaatcaaaaccacaatgagct-gttgcctcaaacttgttagactggctat
i aotNan1.NW_018487195v1       C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    134508 165 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=22885.000000
s hg38.chr14_GL000009v2_random    159449 5 +    201709 attaa
s panTro5.chr9                  41849743 5 + 116767853 attaa
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42096517 5 -  86207423 attaa
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204253503 5 - 204787373 attaa
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    152718 5 - 192460366 attaa
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          172213 5 -  11645122 attaa
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          157472 5 -   6739814 attaa
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    47235 5 - 101219884 tttaa
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          169664 5 -    785044 attaa
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    134673 5 + 181502896 attaa
i nasLar1.chr2                 I 165 I 631
s aotNan1.NW_018487195v1         4111588 5 -   9889416 attaa
i aotNan1.NW_018487195v1       C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e panPan2.chr3                  77810934 0 + 205426864 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I
e gorGor5.CYUI01000160v1          220280 0 +    245036 C

a score=3043383.000000
s hg38.chr14_GL000009v2_random    159454 583 +    201709  
s panTro5.chr9                  41849748 582 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77810934 586 + 205426864  
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          220280 585 +    245036  
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42096522 591 -  86207423  
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204253508 587 - 204787373  
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    152723 587 - 192460366  
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          172218 587 -  11645122  
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          157477 587 -   6739814  
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    47240 590 - 101219884  
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          169669 589 -    785044  
i manLeu1.NW_012099043v1       C 0 C 0
s aotNan1.NW_018487195v1         4111593 571 -   9889416  
i aotNan1.NW_018487195v1       C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    134678 631 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=7098.000000
s hg38.chr14_GL000009v2_random    160037 1 +    201709 t
s panTro5.chr9                  41850330 1 + 116767853 t
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77811520 1 + 205426864 t
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          220865 1 +    245036 t
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42097113 1 -  86207423 t
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204254095 1 - 204787373 t
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    153310 1 - 192460366 t
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          172805 1 -  11645122 t
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          158064 1 -   6739814 t
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    47830 1 - 101219884 t
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          170258 1 -    785044 t
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    135309 1 + 181502896 t
i nasLar1.chr2                 I 631 I 8
s aotNan1.NW_018487195v1         4112164 1 -   9889416 t
i aotNan1.NW_018487195v1       C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=13791.000000
s hg38.chr14_GL000009v2_random    160038 8 +    201709 ttaaaaat
s panTro5.chr9                  41850331 8 + 116767853 ttaaaaaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77811521 6 + 205426864 taaaaa--
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          220866 6 +    245036 taaaaa--
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42097114 8 -  86207423 ttaaacat
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204254096 8 - 204787373 ttagaaat
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    153311 8 - 192460366 ttagaaat
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          172806 8 -  11645122 ttagaaat
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          158065 8 -   6739814 tttaaaat
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    47831 8 - 101219884 ttagaaat
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          170259 5 -    785044 ttaaa---
i manLeu1.NW_012099043v1       C 0 C 0
s aotNan1.NW_018487195v1         4112165 8 -   9889416 ttaaaaat
i aotNan1.NW_018487195v1       C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    135310 8 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=14376.000000
s hg38.chr14_GL000009v2_random    160046 4 +    201709 ttta
s panTro5.chr9                  41850339 4 + 116767853 ttta
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77811527 2 + 205426864 --tt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          220872 1 +    245036 ---a
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42097122 4 -  86207423 ttta
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204254104 4 - 204787373 ttta
i rheMac8.chr2                 C 0 I 2
s macFas5.chr2                    153319 4 - 192460366 ttta
i macFas5.chr2                 C 0 I 2
s macNem1.NW_012010856v1          172814 4 -  11645122 ttta
i macNem1.NW_012010856v1       C 0 I 2
s cerAty1.NW_012001605v1          158073 4 -   6739814 ttta
i cerAty1.NW_012001605v1       C 0 I 2
s chlSab2.chr22                    47839 4 - 101219884 ttta
i chlSab2.chr22                C 0 I 2
s manLeu1.NW_012099043v1          170264 3 -    785044 -ttt
i manLeu1.NW_012099043v1       C 0 I 2
s nasLar1.chr2                    135318 4 + 181502896 ttta
i nasLar1.chr2                 I 8 I 495
s aotNan1.NW_018487195v1         4112173 4 -   9889416 ttta
i aotNan1.NW_018487195v1       C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=2467796.000000
s hg38.chr14_GL000009v2_random    160050 490 +    201709  
s panTro5.chr9                  41850343 492 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77811529 498 + 205426864  
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          220873 497 +    245036  
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42097126 455 -  86207423  
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204254110 492 - 204787373  
i rheMac8.chr2                 I 2 C 0
s macFas5.chr2                    153325 492 - 192460366  
i macFas5.chr2                 I 2 C 0
s macNem1.NW_012010856v1          172820 493 -  11645122  
i macNem1.NW_012010856v1       I 2 C 0
s cerAty1.NW_012001605v1          158079 495 -   6739814  
i cerAty1.NW_012001605v1       I 2 C 0
s chlSab2.chr22                    47845 494 - 101219884  
i chlSab2.chr22                I 2 C 0
s manLeu1.NW_012099043v1          170269 496 -    785044  
i manLeu1.NW_012099043v1       I 2 C 0
s aotNan1.NW_018487195v1         4112177 492 -   9889416  
i aotNan1.NW_018487195v1       C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    135322 495 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=43170.000000
s hg38.chr14_GL000009v2_random    160540 9 +    201709 acttctctt
s panTro5.chr9                  41850835 9 + 116767853 acttctctt
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42097581 9 -  86207423 acttctctt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204254602 9 - 204787373 acttctctt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    153817 9 - 192460366 acttctctt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          173313 9 -  11645122 acttctctt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          158574 9 -   6739814 acttctctt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    48339 9 - 101219884 acttctctt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          170765 9 -    785044 acttctctt
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    135817 9 + 181502896 acttctctc
i nasLar1.chr2                 I 495 I 13542
s aotNan1.NW_018487195v1         4112669 9 -   9889416 aattctctt
i aotNan1.NW_018487195v1       C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e panPan2.chr3                  77812027 0 + 205426864 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I
e gorGor5.CYUI01000160v1          221370 0 +    245036 C

a score=3701534.000000
s hg38.chr14_GL000009v2_random    160549 722 +    201709  
s panTro5.chr9                  41850844 722 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77812027 637 + 205426864  
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          221370 721 +    245036  
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42097590 774 -  86207423  
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204254611 718 - 204787373  
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    153826 718 - 192460366  
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          173322 718 -  11645122  
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          158583 723 -   6739814  
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    48348 720 - 101219884  
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          170774 723 -    785044  
i manLeu1.NW_012099043v1       C 0 C 0
s aotNan1.NW_018487195v1         4112678 717 -   9889416  
i aotNan1.NW_018487195v1       C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=3719.000000
s hg38.chr14_GL000009v2_random    161271 7 +    201709 ctatttt
s panTro5.chr9                  41851566 7 + 116767853 ctatttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77812664 7 + 205426864 Ctttttt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          222091 6 +    245036 cta-ttt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42098364 6 -  86207423 ctt-ttt
i nomLeu3.chr21                C 0 C 0
s aotNan1.NW_018487195v1         4113395 7 -   9889416 ctatttt
i aotNan1.NW_018487195v1       C 0 I 1448
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e rheMac8.chr2                 204255329 0 - 204787373 C
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e manLeu1.NW_012099043v1          171497 0 -    785044 C
e chlSab2.chr22                    49068 0 - 101219884 C
e cerAty1.NW_012001605v1          159306 0 -   6739814 C
e macNem1.NW_012010856v1          174040 0 -  11645122 C
e macFas5.chr2                    154544 0 - 192460366 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=230578.000000
s hg38.chr14_GL000009v2_random    161278 302 +    201709 tgc----------------------------tttttttttttttttttttttgagacggagtctggccctgtcgcccaggctggagtgcagtggcgggatctcgcctcactgcaagctctgcctcccggattcatgccattttcctgcctcagcatccggagtagctgggactacaagtgcccaccaccatgcccggctaa-tttttgcatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccactcgcctcggcctcccaaagtgctgggattacaggc-tgagccaccgcgcccagc
s panTro5.chr9                  41851573 330 + 116767853 tgctttttttttttttttttttttttttttttttttttttttttttttttttgagacggagtctggccctgtcacccaggctggagtgcagtggcgggatctcggctcactgcaagctccgcctcccgggttcacgccattttcctgcctcagcatccggagtagctgggactacaagcgcccgccactatgcccggctaa-tttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggc-tgagccaccgcgcccagc
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77812671 307 + 205426864 ttt------------------------ttttttttttttttttttttttttgtagacggagtctcgctctgtcgcccaggctggagtgcagtggcgccatctcggctcactgcaagctccgcctcccgggttcccgccattctcctgcctcagcctcataggtagctgggaccacaggcg-ctgccaccacgcccggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccacccgcctcggcctcccacagtgctgggattacaggcgtgagccactgcacccggc
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          222097 301 +    245036 tgc----------------------------tttttttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctc-gcctcccgagttcacaccattttcctgcctcagcctcccgagtagctgggactacaggcg-ccaccaccacgcccggcttattttctgtatttttagtagagtcggggtttcactgtgttagcgaggatggtctcgatctcctgacctcgttatccgccagcctcggcct-ccaaagtgctgggattacaggcgtgagccactgcacccggc
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42098370 316 -  86207423 tgc---------------tttttttttctttttttctttttttgtttttttttagacggagtctcgctctgtcgcccaggctggagtgcaggggcgtgatctcagctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgcgactacaggtg-ccgccaccacgcctggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtcttgatcccctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcctgagccaccgtacccggc
i nomLeu3.chr21                C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e rheMac8.chr2                 204255329   0 - 204787373 C
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4113402 1448 -   9889416 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e colAng1.NW_012123820v1           58137 2414 -  10971483 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e manLeu1.NW_012099043v1          171497   0 -    785044 C
e chlSab2.chr22                    49068   0 - 101219884 C
e cerAty1.NW_012001605v1          159306   0 -   6739814 C
e macNem1.NW_012010856v1          174040   0 -  11645122 C
e macFas5.chr2                    154544   0 - 192460366 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=1865335.000000
s hg38.chr14_GL000009v2_random    161580 350 +    201709 ctattttgctc-ttatcttctatttgttccatcattttttgctcctctgttctttctttcatgcctttttatattaactgaacaatattcagcgttccattttaattcctttattggcattttagaagaatatcttcatataatgtggtggttctctagggat--tgtaataaacatcctgggcttatcgcagtccgctta--ctgttaatagtcaacgttttcatgtaacataaagaaaagttttggcaaacttgttgcttttagtctcctgtcagagctattaatttagaatattttactctacatacattatcaatagtactcttaattttttatttaaaccatcagttgtt
s panTro5.chr9                  41851903 350 + 116767853 ctattttgctc-ttatgttctatttgttccatcattttttgctcctctgttctttctttcatgcctttttatattaactgaacaatattcagctttccattttaattcctttattggcattttagaagaatatcttcatataatgtggtggttctctagggat--tataataaacatcctgggcttatcgcagtccactta--ctgttaatagtcaacgttttcatgtaacataaagaaaagttgcggcaaaattgttgcgtttagtctcctgtcagagctattaatttagaatattttactctacatatattatcaatagtactcttaattttttatttaaaccatcagttgtt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77812978 348 + 205426864 cTATTTTGCTC-ttatgttctatttgttccatcattttttgctcctctgttctttctttcatgcctttttatatcaactgaacaacattcagtgttccattttaattcctttattggcattttagaagaatatcttcatataatgtggtggttctctagggat--tataataagcatcctgggcctatcacagtccacttagtgtgttaatagtcaacgttttcatgtaacatgaagaaatgttgcagcaaaattgttgtgtttagtcttctgtcagagctattaacttagaatattttactccacatacattatcaatagtacacttaattttttatttaaaccatcag----t
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          222398 343 +    245036 ctattttgctc-ttatgttctatttgttccatcattttttgctcctttg----ttctttcatgcctttttatatcaactgaacaatattcagtgttccattttaattcctttattggcattttagaagaatatcttcatataatgtggtggttctctagggat--tataataagcatcctgggcttatcacagtccactta--gtcttaatcgtcaacgttttcatgtaacatgaagaaatgttgcagcaaaattgt---gtttagtttcctgtcagagctattaacttagaatattttactctacatacattatcaatagtacacttaattttttatttaaaccatcagttgtt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42098686 344 -  86207423 cttttttgctc-ttatgttctatttgttccatcattttttcctcctctgttctttctttcatgcctttttatattaactgaacaatattcggcattccattttaattcctttattggaattttagaagaatgtcttcatatgatgtggtggttctctagggat--tataatcagcatcctgggcttatcgcagtccactta--ctgttaacagtcaacgttttcatgtaacataaa-aaatgttgcagcaaaattgttgcatttagtctcctgtcagagctattaatttagaatagttt-----acatacattatcaacattacacttaattttttatttaaaccatcagttgtt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204255329 350 - 204787373 ctattttgctctttatgttctactttttccatcattttttcctccactgttctttctttcatggctttttatattaattgaacaatattcagtgttcccttttaattcctttattggcattttagaagaatatcttcatatgatgtgatggttctctagggat--tataataaaaatcctgggcttatcgccctccactca--gtgttaatactcaatgttttcatgtaacataaagaaatattgcagcaaaattgttgcatttagtctcctgtcagagctattaatttagaatattttactctacatgcattatcaatagtacacttaattttttattgaaa-catcagttgtt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    154544 351 - 192460366 ctattttgctctttatgttctactttttccatcattttttcctccactgttctttctttcatggctttttatattaattgaacaatattcagtgttcccttttaattcctttattggcattttagaagaatatcttcatatgatgtgatggttctctagggat--tataataaaaatcctgggcttatcgccctccactca--gtgttaatactcaatgttttcatgtaacataaagaaatattgcagcaaaattgttgcatttagtctcctgtcagagctattaatttagaatattttactctacatgcattatcaatagtacacttaattttttattgaaaccatcagttgtt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          174040 351 -  11645122 ctattttgctctttatgttctactttttccatcattttttcctccactgttctttctttcatggctttttatattaattgaacaatattcagtgttcccttttaattcctttattggcattttagaagaatatcttcatatgatgtgatggttctctagggat--tataataaaaatcctgggcttatcgccctccactca--gtgttaatactcaatgttttcatgtaacataaagaaatattgcagcaaaattgttgcatttagtctcctgtcagagctattaatttagaatattttactctacatgcattatcaatagtacacttaattttttattgaaaccatcagttgtt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          159306 351 -   6739814 ctattttgctctttatgttctattttttccatcattttttcctccactgttctttctttcatggctttttatattaattgaacaatattcagtgttcccttttaattcctttattggcattttagaagactaccttcatatgatgtggtggttctctagggat--tataataaaaatcctgggcttatcgccctccactta--gtgttaatactcaatgttttcatgtaacataaagaaatgttgcagcaaaattgttacatttagtctcctgtcagagctattaatttagaatattttactctacatgcattatcaatagtacacttaattttttattgaaactatcagttgtt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    49068 351 - 101219884 ctattttgctctttatgttctatttttcccatcattttttcctccactgttctttctttcatggctttttatattaattgaacaatattcagtgttcccttttaattcctttattggcattttagaagaatatcttcatatgatgtggtggttctctagggat--tataataaaaatcctgggcttatcgccctccacgta--gtgttaatactcaatgttttcatgtaacataaagaaatggtgcagcaaaattgttgcatttagtctcctgtcagagctattaatttagaatattttaatctacatgcattatcaatagtacacttaattttttattgaaaccatcagttgtt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          171497 351 -    785044 ctattttgctctttatgttctattttttccatcattttttcctccactgttctttctttcatggctttttatattaattgaataatattcagtgttcccttttaattcctttattggcattttagaagaatatcttcatatgatgtgatggtgctctagggat--tataataaaaatcctgggcttatcgccctccactta--gtgttaatactcaatgttttcatgtaacataaagaaatattgctgcaaaattgttgcatttagtctcctgtcagaactattaatttagaatattttactctacatgcattatcaatagtatacttaattttttattgaaaccatcagttgtt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           60551 353 -  10971483 ctattttgctctttatgtcctattttttccatcattttttcctccactgttctttctttcatgcctttttatattaattgaacaatattcagtgttccattttaattcctttattggcattttagaagaatatcttcatatgatgtcatggttctctagggattatataataagcatcctgggcttatcgccctccactta--gtgttaatactcaatgttttcatgtaacataaagaactgttgcagcaaaattgttgcatttagtctcctgtcagagctattaatttagaatattttactctacatacattatcaatagtacacttaattttttattgaaaccatcagttgtt
i colAng1.NW_012123820v1       I 2414 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           62304 4630 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4113402 1448 -   9889416 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=26394.000000
s hg38.chr14_GL000009v2_random    161930 4 +    201709 tgtt
s panTro5.chr9                  41852253 4 + 116767853 tgtt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77813326 4 + 205426864 tgtt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          222741 4 +    245036 tgtt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42099030 4 -  86207423 tgtt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204255679 4 - 204787373 tgtt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    154895 4 - 192460366 tgtt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          174391 4 -  11645122 tgtt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          159657 4 -   6739814 tgtt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    49419 4 - 101219884 tgtt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          171848 4 -    785044 tgtt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           60904 4 -  10971483 tgtt
i colAng1.NW_012123820v1       C 0 C 0
s eulFla1.LGHW01000695v1           66934 4 +   1229009 tctt
i eulFla1.LGHW01000695v1       I 4630 I 258
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4113402 1448 -   9889416 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=1309363.000000
s hg38.chr14_GL000009v2_random    161934 249 +    201709 ataaaactaaaagaaaaaag-----------ccttagtttttcctgtttatgcacatgccattcctagagcttctccttgcttcctgtaggtcagaatttccatctgttgttatctttctttagtctaaaaaatttccgtttgcatttcttgtatctaggtctgctaatgacaattgttcaaagctttcttttatctgaataaatctttattttctcaagaattactttttctagttatagaatttggagttgacag------ttt
s panTro5.chr9                  41852257 251 + 116767853 ataaaactaaaagaaaaaag-----------ccttagtttttcatgtttatgcacatgccattcctagagattctccttgcttcctgtaggtcagaatttccatctgttgttatctttctttagtctaaaaaatttccgtttgcatttcttgtatctaggtctgctaatgacaattgttcgaagctttcttttatctgaataaatctttattttctcaagaattactttttctagttatagaatttggagttgacagt----tttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77813330 251 + 205426864 ataaaactaaaagaaaaaag-----------ccttagtttttcatgtttatgcacttggcattcctagagcttctccttgcttcctgtaggtcctaatttccatctgttgttatctttctttagcctaaaacatttccgtttgcatttcttgtatttgggtctgctaatgacaaatattcgaagctttcttttatctgaataaatctttattttctcgacaatgactttttctagttatagaatttggagttgacagg----tttt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          222745 255 +    245036 ataaaactaaaagaaaaaag-----------ccttagtttttcatgtttatgcacttggcattcctagagcttctccttgcttcctgtaggtcctaatttccatctgttgttatctttctttagcctaaaacatttccgtttgcatttcttgtatttaggtctgctaatgacaaatattcgaagctttcttttatctgaataaatctttattttctcgacaatgactttttctagttatagaatttggagttgacaggtttttttt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42099034 251 -  86207423 ataaaactaaaagaaaaaag-----------ccttagtttttcatgttgacgcacttgccattcctagagcttctccttgcttcctgtagttcagaatttccatctgttgttatctttctttagcctgaaaaatttccgtttgcatttcttgtatttacctctgctaatgacaaatgttcgaagctttcttttacctgaataaatctttattttctcaagaattactttttctagttatagaatttggagttgacagg----tttt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204255683 264 - 204787373 ataaaactgaaagaaaaaaannnnnnnnnnnnnnnnnnnnttcatgtttatgcacatgtcattcctagagcttctcctcgcttcctgtaggtcagaatttccatctgttgttatctttctttagcctaaaaaattttcatttgcatttcttgtatttaggtctgctaatgacaaatgtttgaagctttcttttctctgaataaatctttattttctcaataattactttttctagttatagaatttggagttgacagg--tattgt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    154899 254 - 192460366 ataaaactgaaagaaaaaaa----------cccttaatttttcatgtttatgcacatgtcattcctagagcttctcctcgcttcctgtaggtcagaatttccatctgttgttatctttctttagcctaaaaaatttccatttgcatttcttgtatttaggtctgctaatgacaaatgtttgaagctttcttttctctgaataaatctttattttctcaataattactttttctagttatagaatttggagttgacagg--tattgt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          174395 254 -  11645122 ataaaactgaaagaaaaaaa----------cccttaatttttcatgtttatgcacatgtcattcctagagcttctcctcgcttcctgtaggtcagaatttccatctgttgttatctttctttagcctaaaaaatttccatttgcatttcttgtatttaggtctgctaatgacaaatgtttgaagctttcttttctctgaataaatctttattttctcaataattactttttctagttatagaatttggagttgacagg--tattgt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          159661 254 -   6739814 atgaaactgaaagaaaaaaa----------cccttaatttttcatgtttatgcacatgtcattcctagagcttctcctcgcttcctgtaggtcagaatttccatctgttgttatctttctttagcctaaaaaatttccatttgcatttcttgtatttaggtctgctaatgacaaatgtttgaagctttcttttctctgaataaatctttattttctcaagaattactttttctagttatagaatttggagttgacagg--tattgt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    49423 252 - 101219884 ataaaactgaaagaaaaaa------------ccctaatttttcatgtttatgcaaatgttattcctagagcttctcctcgcttcctgcaggtcagaatttccatctgttgttgtctttcttcagcctaaagaatttccgtttgcgtttcttgtatttaggtctgctaacaacaaacgtttgaagctttcttttctctgaataaatctttattttctcaagaactgcgttttctagttatagaatttggagctgacagg--tattgt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          171852 254 -    785044 ataaaactgaaagaaaaaaa----------cccttaatttttcatgtttatgcacatgtcattcctagagcttctcctcgcttcctgtaggtcagaatttccatctgttgttatctttctttagcctaaaaaatttccatttgcatttcttgtatttaggtctgctaatgacaaatgtttgaagctttcttttctctgaataaatctttattttctcaataattactttttctagttatagaatttggagttgacagg--tattgt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           60908 245 -  10971483 ataaaactgaaagaaaaaaa----------ctctcaatttttcatgtgtatgcacatgtcattcctagagcttctcctcgcttcctgtaggtcagaatttccatc---tgttatctttcttcagcctaaaaaatttccgtttgcatttcttgtatttaggtctgctaatgacaaatgttcgaagttttcttttctctgaataaa----tattttctcaagacttactttttctagttatagaatttggagttgaccgg--tat--t
i colAng1.NW_012123820v1       C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           66938 258 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4113402 1448 -   9889416 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=26669.000000
s hg38.chr14_GL000009v2_random    162183 5 +    201709 ttttt
s panTro5.chr9                  41852508 5 + 116767853 ttttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77813581 5 + 205426864 ttttt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          223000 5 +    245036 ttttt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42099285 5 -  86207423 ttttt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204255947 5 - 204787373 ttttt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    155153 5 - 192460366 ttttt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          174649 5 -  11645122 ttttt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          159915 5 -   6739814 ttttt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    49675 5 - 101219884 ttttc
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          172106 5 -    785044 ttttt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           61153 5 -  10971483 tgtta
i colAng1.NW_012123820v1       C 0 C 0
s eulFla1.LGHW01000695v1           67196 5 +   1229009 ttgtt
i eulFla1.LGHW01000695v1       I 258 I 1938
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4113402 1448 -   9889416 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=672968.000000
s hg38.chr14_GL000009v2_random    162188 122 +    201709 attttgaagatgtagtttcattgctttttaaag--tgtcacttctgatgacaggtcatctgtctatttgtttccaagtatgtaaatta-ttttctccctccctttagctactttcaagatttact
s panTro5.chr9                  41852513 122 + 116767853 attttgaagatgtagtttcattgctttttaaag--tgtcatttctgatgacaggtcatctgtctatttgtttccacgtatgtaaatta-ttttctccctccctttagctactttcaagatttact
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77813586 118 + 205426864 attttgaagatgtagtttgattgctttttaaac--tgtcatttctgatgacaggtca----tctatttgtttccatgtatgtaaatta-ttttctccctccctttagctactttcaagatttact
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          223005 122 +    245036 attttgaagatgtagtttcattgctttttaaac--tgtcatttctgatgacaggtcatctgtctatttgtttccatgtatgtaaatta-ttttctccctccctttagctactttcaagatttact
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42099290 123 -  86207423 agtttgaagatgtggtttcattgctttttaaac--tgtcatttctgatgacaggtcatctgtctattcgtttccatgtatgtacattatttttctccctccctgttgctactttcaagatttact
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204255952 124 - 204787373 attttgaagatgtagtttcattgctttttaaactttgtcatttctgatgacaggtcatctctctatttgtttccatgtatgtaaatta-ttttctctatccctttagctactttcaagatttact
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    155158 124 - 192460366 attttgaagatgtagtttcattgctttttaaactttgtcatttctgatgacaggtcatctctctatttgtttccatgtatgtaaatta-ttttctctatccctttagctactttcaagatttact
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          174654 124 -  11645122 attttgaagatgtagtttcattgctttttaaactttgtcatttctgatgacaggtcatctctctatttgtttccatgtatgtaaacta-ttttctctatccctttagctactttcaagatttact
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          159920 124 -   6739814 attttgaagatgtagtttcattgctttttaaactttgtcatttctgatgacaggtcatctgtctatttgtttccatgtatgtaaatta-ttttctctatccctttagctactttcaagatttact
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    49680 124 - 101219884 attttgaagatgtagtttcattgctttttaaactttgtcatttctgatgacaggtcatctgtctatttgtttccatgcatgtaaatta-ttttctctatccctttagctgctttcaagatttact
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          172111 124 -    785044 attttgaagatgtagtttcattgctttttaaactttgtcatttctgatgacaggtcatctctctatttgtttccatgtatgtaaatta-ttttctctatccctttagctactttcaagatttact
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           61158 120 -  10971483 attttgaagatgtagtttcattgctttttaaactttgtcatttctgatgacaggtcg----tctatttgtttccatgtatgtaaatta-ttttctctatccctttagctactttcaagatttact
i colAng1.NW_012123820v1       C 0 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4113402 1448 -   9889416 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e otoGar3.GL873528              20738019 3558 +  38779656 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=1317355.000000
s hg38.chr14_GL000009v2_random    162310 220 +    201709 ctttttttgcc---cagtggtttgactatggtatgtctacatttggttctctatatttttattctgttc-------ttagagtttcttaaacctgtaagttgatatatgctgacaattaggaaaagttttggtctttactttttcaaatacctttttttgtcttatt---ttcttctcta--ctctttctaggagtccaattatattagtgct---------agactggtcatatttttattat
s panTro5.chr9                  41852635 217 + 116767853 ctttttttgcc---tagtggtttgactatggcatgtctacatttggttgtctttatttttattctgttc-------tttgagtttcttaaacctgtaagttgatatatgctgacaattaggaaaacttttggtctttactttttcaaacagctttttctgtctcatt---ttcttctcta--ctctttctaggagtccaattatattagtgct---------agactggccctattt---ttat
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77813704 223 + 205426864 cttttttagcc---cagtggtttgactatggtatgtctacatttggttgtctttatttttattctgttc-------tttgagtttcttaaacctgtaagttgatatatgctgacagttaggaaaactttttgtctttactttttcaaatagctttttctgtctcattttgttcttctcta--ctctttctaggactccaattatattagttct---------agactggccctatttttattgt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          223127 223 +    245036 cttttttagcc---cagtggtttgactatggtatgtctacatttggttgtctttatttttattctgttc-------tttgagtttcttaaacctgtaagttgatatatgctgacagttaggaaaacttttggtctttactttttcaaatagctttttctgtctcattttcttcttctcta--ctctttctaggactccaattatattagtgct---------aggctggccctatttttattat
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42099413 219 -  86207423 ctttttttgcc---caatggtttgactatggtatgtctgcatttggt--tctttatttttattctgttc-------tttgagtttcttaaacctttaagttgaaatatgctgacaattaggaaaacttttggtctttactttttcaaatagctttttctg-----------tcttctcta--ctctttctaggactccaattatattagttctagactggccagactggccctatttttattat
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204256076 223 - 204787373 ctttttttgcc---cagtggtttgactatggtatgtctacatttggttctctttatttttattctgttc-------ttcgagtttcttgaatctgtaagttgatatatgctgacaattaggaaaactgttggtctttactttttcaaatagctttttctgtctcattttctccttctcta--ctctttctagtactccaattatgttagttct---------atactggtcctatatttattat
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    155282 223 - 192460366 ctttttttgcc---cagtggtttgactatggtatgtctacatttggttctctttatttttattctgttc-------ttcgagtttcttgaatctgtaagttgatatatgctgacaattaggaaaactgttggtctttactttttcaaatagctttttctgtctcattttctccttctcta--ctctttctaggactccaattatgttagttct---------agactggtcctatatttattat
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          174778 223 -  11645122 ctttttttgcc---cagtggtttgactatggtatgtctacatttggttctctttatttttattctgttc-------ttcgagtttcttgaatctgtaagttgatatatgctgacaattaggaaaactgttggtctttactttttcaaatagctttttctgtctcattttctccttctcta--ctctttctaggactccaattatgttagttct---------agactggtcctatatttattat
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          160044 223 -   6739814 ctttttttgcc---cagtggtttgactatggtatgtttacatttggttctctttatttttattctgttc-------tttgagtttcttgaatctgtaagttgatatatgctgacatttaggaaaactgttggtctttactttttcaaatagctttttctgtctcattttctccttctcta--ctctttctaggaccccaattatgttagttct---------agactggtcctatttttattat
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    49804 223 - 101219884 ctttttttgcc---cagtggtttgaccatggcatgtctgcatttggttctctttatttttattctgttc-------ttcgagtttcttgaatctgtaagttgatatatgttgataattaggaaaactgttggtctttactttttcaaatagctttttctgtctcattttctccttctcta--ctctttctaggactccaattatgttagttct---------agactggtcctatatttattat
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          172235 223 -    785044 ctttttttgcc---cagtggtttgactatggtatgtctacatttggttctctttatttttattctgttc-------ttcgagtttcttgaatctgtaagttgatatatgctgacaattaggaaaactgttggtctttactttttcaaatagctttttctgtctcattttctccttctcta--ctctttctaggactccaattatgttagttct---------agactggtcctatatttattat
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           61278 223 -  10971483 ctttttttgcc---cagtggtttgactatggtatgtctacatttgattctctttatttttattctgttc-------ttcgagtttcttgaatctgtaagttgatatatgctgacaattaggaaaactgttggtttttactttttcaaatagctttttctgtctcattttctccttctcta--ctctttctagaactccaattatattagttct---------agactggtcctatttttattat
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20741577 233 +  38779656 Ctgttttcacctctcagtgacttaa-taccatatgcctccctttgatttccttcatatctattctgtgcagggttatttgaacttcttgaatctgt-agttgatgtttttatataatttagaaaacttttggttctaacttggtcaaatactgttttctgcctcattttctccttttctagtctccttctgggataccaattacattactgct---------agagtggctctatttttattat
i otoGar3.GL873528             I 3558 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4113402 1448 -   9889416 I
e canFam3.chr31                 28776157 1890 -  39895921 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=1308686.000000
s hg38.chr14_GL000009v2_random    162530 215 +    201709 ttttc-tcctttgta---ttaactgtattg--agaaattgttcttgatctgtttttaagtgcactgatagttttttctgccatctttcatttactggtatgtgcataaaatgactattttatataagatattctctctctcagttctaaaatttgt-cctattatccctttatcatttttacttctctgttgagattctccatatattccctcttactacca
s panTro5.chr9                  41852852 215 + 116767853 ttttc-tcctttgta---ttaactgtattg--ggaaattgttcttgatctatttttaagtgcactgatagttttttctgccatctttaatttactggaatgtgcataaaatcacacttttatataagatattctgtctctcagttctaaaatttgt-cctattatctctttatcatttttacttctctgttgagattcttcatatattccctcttatgacca
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77813927 219 + 205426864 ttttcttcctctgtatttttaactgtattg--ggaaattgttcttgatctgtttttaagtgcactgatagttttttctgccatctttaatttactggtatatgcatacaatgacatttttatataagatattctgtctctcagttctaaaatttgt-cctattatttgtttatcacttttacttctctgttgagattctccatatattccctcttatgatca
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          223350 219 +    245036 ttttcttcttctgtattcttaactgtattg--ggaaactgttcttgatctgtttttaagtgcactgatagttttttctgccatctttaatttactggtatgtgcatacaatgacatttttatgtaagatattctgtctctcagttctaaaatttgt-cctattatttctttatcatttttacttctctgttgagattctccatatattccctcttatgacca
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42099632 206 -  86207423 ttttcttcctctgta------------ttg--ggaaattgttcttgatctgtttttaagtgcactgatagttttttctgccatctttaatttactggtatgtgcatacgatgtcattcttatataagatattgtgtccctcagttctaaaattttt-cccattatttctttatcgttttta-ttctctgttgagattctcaatatagtcactcttatgacca
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204256299 219 - 204787373 ttttcttcctctgtattcttaactgtattg--ggaaattgttcttgatctgtttttaagtgtactgatagttttttctgccatctttaatttactggtatgtgcatacaatggcatttttatataagatattctgtccctcagttctaaattttgt-tccattatttctttatagtttttgcttctttgtcaagattctccatatattcactcttatgacca
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    155505 219 - 192460366 ttttcttcctctgtattcttaactgtattg--ggaaattgttcttgatctgtttttaagtgtactgatagttttttctgccatctttaatttactggtatgtgcatacaatggcatttttatataagatattctgtccctcagttctaaattttgt-tccattatttctttatagtttttgcttctttgtcaagattctccatatattcactcttatgacca
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175001 219 -  11645122 ttttcttcctctgtattcttaactgtattg--ggaaattgttcttgatctgtttttaagtgtactgatagttttttctgccatctttaatttactggtatgtgcatacaatggcatttttatataagatattctgtccctcagttctaaattttgt-tccattatttccttatagtttttgcttctttgtcaagattctccatatattcactcttatgacca
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          160267 219 -   6739814 ttttcttcctctgtattcttaactgtattg--ggaaattgttcttgatctgtttttaagtgtactgatagttttttctgccatctttaatttattggtatgtgcatacaatagcatttttatataagatattctgtccctcagttctaaattttgt-tccattatttctttatagtttttgcttctttgtcaagattctccatatattcactcttatgacca
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50027 218 - 101219884 ttttcttcctctgtattcttaactgtattg--ggaaattgttcttgatctgtttttaagtgtactgatagttttttctgccatctttaatttgctggtatgtgcatacaatggcatttttatataagatattctgtccctcagttctaaattttgt-tccattatttctttgtag-ttttgcttctttgtcaagattctccatgtattcactcttatgacca
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          172458 219 -    785044 ttttcttcctctgtattcttaactgtattg--ggaaattgttcttgatctgtttttaagtgtactgatagttttttctgccatctttaatttactggtatgtgcatacaatggcatttttatataagatattctgtccctcagttctaaattttgt-tccattatttctttatagtttttgcttctttgtcaagattctccatatattcactcttacgacca
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           61501 219 -  10971483 ttttcttcctctgtattcttaactgtattg--ggtaattgttcttgatctgtttttaagggtactgatagttttttctgccatctttaatttactggtatgtgcatacaatgacatttttatgtaagatattctgtccctcaattgtaaattttgt-tccattatttgtttatagtttttgcttctttgtcgagattctccatatattaactcttatgacta
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20741810 190 +  38779656 atttttttctccatattcttaat----atg--gaaaattattctttatctgtcataca---------------tttctgccatctctaatcttttggtaaacacatacagtaattttttaataacaaatattct----tttggttccagaatttgt-ttcattat----ttatagtttttatttctc--ttaagattccttatatattttcccttatgacca
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28778047 206 -  39895921 -ttttttcctctgtattcttcatt---ttgaaaaaaaatgttctttatct----tcagatttattgatacttttttctatcacat--------ctggtaagcctatctagtaaatttttcatattaaatattatattcatcagtgctagcatttctatttccttttttcttgttgtttttattcccttgttgaaattccccatatattcacatgtatgacca
i canFam3.chr31                I 1890 C 0
e micMur3.chr31                 30855620 4648 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4113402 1448 -   9889416 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=353888.000000
s hg38.chr14_GL000009v2_random    162745 49 +    201709 tctattccttaaatccttgaatatgcttataatagc-------------------------------------ttatttcaaattt
s panTro5.chr9                  41853067 49 + 116767853 tctattccttaaatccttgaatatgcttataatagc-------------------------------------tgattttaaattt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814146 49 + 205426864 tctattccttaaatccttgaatatgcttataatagc-------------------------------------ttattttacattt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          223569 49 +    245036 tctattctttaaatccttgaatatgcttataatagc-------------------------------------ttattttaagttt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42099838 49 -  86207423 tctattccttaaatccttgaatatgcttacaatagc-------------------------------------ttattttaaattt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204256518 49 - 204787373 tctatttcttaaatccttgaagatgcttataatagc-------------------------------------ttattttaaattt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    155724 49 - 192460366 tctatttcttaaatccttgaagatgcttataatagc-------------------------------------ttattttaaattt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175220 49 -  11645122 tctatttcttaaatccttgaagatgcttataatagc-------------------------------------ttattttaaattt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          160486 49 -   6739814 tctatttcttaaatccttgaagatgcttataatagc-------------------------------------ttattttaaattt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50245 49 - 101219884 tctatttcttaaatccttgaagatgcttataatagc-------------------------------------ttattttaaattt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          172677 49 -    785044 tctatttcttaaatccttaaagatgcttataatagc-------------------------------------ttattttaaattt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           61720 49 -  10971483 tctatttcttaaatccttgaagatgcttataatagc-------------------------------------ttgttttaaattt
i colAng1.NW_012123820v1       C 0 C 0
s micMur3.chr31                 30860268 48 -  47401472 tctattccttaaattcttaaacatgcttctaatagc-------------------------------------tcatttaaagta-
i micMur3.chr31                I 4648 C 0
s otoGar3.GL873528              20742000 41 +  38779656 tctattctttaaattcttaaacatgcttataatagc-------------------------------------taatt--------
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28778253 86 -  39895921 tctatttctttaattcttgagtttacttatactagctaacatacaatccttgcctTCtttattttattttattttattttattttt
i canFam3.chr31                C 0 I 171
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4113402 1448 -   9889416 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924  6 +  14377064 I
e saiBol1.JH378168              10918542  0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=1204151.000000
s hg38.chr14_GL000009v2_random    162794 144 +    201709 cttatcttctaattccagcatgtgggccatttcaatgtcttaatccattgtttacttttttt-attatgtgtcatattttcctg-------gttcta----------tgtctaggcaggttaaattatatcttagattatgtgtatgatattttgtagagat---
s panTro5.chr9                  41853116 144 + 116767853 cttatcttctaattccagcatgtgggccatttcaatgtcttaatccattgtttactttttat-gttatgtgtcatattttcctg-------gttcta----------tgtctaggcaggttaaattatatgttagattatgtgtatgatattttgtagagat---
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814195 144 + 205426864 cttatcttctaatcccagcatgtggaccatttcaatgtcttaatccattgtttacttttttt-cttatgcgtcatattttcctg-------gttcta----------tgtctaggcaggttaaattatatgttagattatgtggatgatattttgtagagat---
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          223618 144 +    245036 cttatcttctaatcccagcatgtggaccatttcaatgtcttaatccattgtttacttttttt-cttatgcgtcatattttcctg-------gttcta----------tgtctaggcaggttaaattatatgttagattgtgtcgatgatattttgtagagat---
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42099887 144 -  86207423 cttatcttctaatcccagcgtgtgggccacttcaatgtcttaatccattgtttacttttttt-cttatgcgtcatattttcctg-------gttcta----------tgtctagacaggttaaattatatgttagattatgtggatgatattttgtagagat---
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204256567 143 - 204787373 cttatcttctaatcccagcatgtgggctatttcaatgtcttaatccattgtttac-tttttt-cttataaattatattttcctg-------gttcta----------tgtctaggcatgttaaattatatgttagattatgtggatgatattttgtagagat---
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    155773 143 - 192460366 cttatcttctaatcccagcatgtgggctatttcaatgtcttaatccattgtttac-tttttt-cttataaattatattttccta-------gttcta----------tgtctaggcatgttaaattatatgttagattatgtggatgatattttgtagagat---
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175269 143 -  11645122 cttatcttctaatcccagcatgtgggctatttcaatgtcttaatccattgtttac-tttttt-cttataaattatattttcctg-------gttcta----------tgtctaggcatgttaaattatatgttagattatgttgatgatattttgtagagat---
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          160535 144 -   6739814 cttatcttctaatcccagcatgtgggctatttcaatgtcttaatccattgtttac-ttttttccttatggatcatattttcctg-------gttcta----------tgtctaggcatgttaaattatatgttagattatgtggatgatattttgtagagat---
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50294 144 - 101219884 cttatcttctaatcccagcacgtgggctatttcaatgtcttaatccattgtttacttttttt-cttatggatcatattttcctg-------gttcta----------tgtctaggcatgttaaattatatgttagattatgtggatgatattttgtagagat---
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          172726 143 -    785044 cttatcttctaatcccagcatgtgggctatttcaatgtcttaatccattgtttac-tttttt-cttataaattatattttcctg-------gttcta----------tgtctaggcatgttaaattatatgttagattatgtggatgatattttgtagagat---
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           61769 144 -  10971483 cttatcttctaatcccatcatgtgggctatttcaatgtcttaatccatggtttacttttttt-cttatggatcatattttcctg-------gttcta----------tgtctaaacatgttaaattatatgttagattatgtggatgatattttgtagagat---
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4114850 144 -   9889416 Cttatcttctaatcccagcatgtgggccatttcaatgtcttaatccattgtttacttttttt-cttatatgtcatattttcctg-------atttta----------tgtctaggcatgttaaattatatgttggattatgtggatgatattttgtagagat---
i aotNan1.NW_018487195v1       I 1448 C 0
s micMur3.chr31                 30860316 154 -  47401472 cttttcttctaattccaacatgtgagccatttcaatgtctaattcagatatttacatttttt-cttacatgtcatattttcctg-------gttgttttttttttaatgtctaggcattttaaattatagacaagattatgtggttgatattttgtagagac---
i micMur3.chr31                C 0 I 3
s otoGar3.GL873528              20742041 135 +  38779656 -ccttactctaatttcaacatgggatccatttcaatgtctcatttcattgtttacttttttg-attatgtgtcatatttttt-------------------------tgtctatggattttaaattatattccaggttatatggatgatattttgtaaagac---
i otoGar3.GL873528             C 0 I 176
s canFam3.chr31                 28778510 151 -  39895921 cttgccttctaattcccaaat-taggccacctcaacgtgtctttccattgtctac-tttttt-cctatgtgttatattttcctgtatttttttttaa----------tgcatagctgtttttaattatatactggatt-tggggctgatatattgtagagactct
i canFam3.chr31                I 171 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=84807.000000
s hg38.chr14_GL000009v2_random    162938 10 +    201709 aggctctttt
s panTro5.chr9                  41853260 10 + 116767853 aggttctttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814339 10 + 205426864 aggttctttt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          223762 10 +    245036 aggttctttt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100031 10 -  86207423 aggttctttt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204256710 10 - 204787373 aggttctttt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    155916 10 - 192460366 aggttctttt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175412 10 -  11645122 aggttctttt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          160679 10 -   6739814 aggttccttt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50438 10 - 101219884 aggttccttt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          172869 10 -    785044 aggttccttt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           61913 10 -  10971483 aggttctttt
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4114994 10 -   9889416 aggttctttt
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30860473 10 -  47401472 agattctgtt
i micMur3.chr31                I 3 C 0
s otoGar3.GL873528              20742352 10 +  38779656 cggctatttt
i otoGar3.GL873528             I 176 I 113
s canFam3.chr31                 28778661 10 -  39895921 gagtcctgtt
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924  6 +  14377064 I
e saiBol1.JH378168              10918542  0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=594368.000000
s hg38.chr14_GL000009v2_random    162948  73 +    201709 attttcctttgaagagtgactctt-ttctaacattagtc--------------------------------------------------------------ttctttctgtagtcaaacaccaaactt-tcactcct--------------------------------
s panTro5.chr9                  41853270  73 + 116767853 attttcctttgaagagtgACTCTT-TTCTAACATTAGTC--------------------------------------------------------------TTCTTTCTGTATTCAAACACCAAACTT-TCACTCCT--------------------------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814349  73 + 205426864 attttcctttgaagactgACTCTT-TTCTAACATTAGTC--------------------------------------------------------------TTCTTTCTGTAGTCAAACACCAAACTT-TCACTCCT--------------------------------
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          223772 135 +    245036 attttcctttgaagagtgACTCTT-TTCTAACATTAGTCttctttcttttttttttttttttAACAGTATAGATATCTTTAATTTCTTTCATGTTACAGTTTTCTTTCTGTAGTCAAACACCAAACCT-TCACTCCT--------------------------------
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100041  73 -  86207423 attttcctttgaagagtgACTCTT-TTCTAATATTAGTC--------------------------------------------------------------TTCTTTGTGTAGTCAAACACCAAACTT-TTACTCCT--------------------------------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204256720  73 - 204787373 attttcctttgaagagtgACTCTG-TTCTAACATTAGTC--------------------------------------------------------------TTCTTTCTGTAGTCAAACACCAAATTT-CCACTCCT--------------------------------
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    155926  73 - 192460366 attttcctttgaagagtgACTCTG-TTCTAACATTAGTC--------------------------------------------------------------TTCTTTCTGTAGTCAAACACCAAATTT-CCACTCCT--------------------------------
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175422  73 -  11645122 attttcctttgaagagtgACTCTG-TTCTAACATTAGTC--------------------------------------------------------------TTCTTTCTGTAGTCAAACACCAAATTT-CCACTCCT--------------------------------
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          160689  74 -   6739814 attttcctttgaagagtgACTCTGTTTCTAATATTAGTC--------------------------------------------------------------TTCTTTCTGTAGTCAAACACCAAATTT-CCACTCCT--------------------------------
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50448  74 - 101219884 attttcctttgaagagtgACTCTGTTTCTAATATTAGTC--------------------------------------------------------------TTCTTTCTGTAGTCAAACACCAAATTT-CCACTCCT--------------------------------
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          172879  73 -    785044 attttcctttgaagagtgactctg-ttctaacattagtc--------------------------------------------------------------ttctttctgtagtcaaacaccaaattt-ccactcct--------------------------------
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           61923  73 -  10971483 attttcctttgaagagtgactgtt-ttctaacattagtc--------------------------------------------------------------ttctttctgtagtcaaacacaaaattt-tcattcct--------------------------------
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4115004  73 -   9889416 attttcctttgaagagtgACTCTT-CTCTAACATTACTC--------------------------------------------------------------TTCTTTCTGTAGTCAAACACTAAACTT-TCACTCCT--------------------------------
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30860483  73 -  47401472 tttttgttttgaagagtgaccctt-ttctaacattattc--------------------------------------------------------------actttattatactcaaacaccaaactt-tcagtcct--------------------------------
i micMur3.chr31                C 0 I 2
s otoGar3.GL873528              20742475  73 +  38779656 ATTTTACTTTTAAGGGTAACTCAT-TTCTAACATTATTC--------------------------------------------------------------ACCTTATTGTACTCAAACACCAAACAC-TCACTCCT--------------------------------
i otoGar3.GL873528             I 113 I 2
s canFam3.chr31                 28778671 105 -  39895921 atttttctttgaggagtgacttt--ttctagtattactc--------------------------------------------------------------atctatctgtactcaaacaccaaactTCTCACTTCATGTGAGATGGAATGGAATTTGTTTGAATTAGT
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=9100.000000
s hg38.chr14_GL000009v2_random    163021 1 +    201709 g
s panTro5.chr9                  41853343 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814422 1 + 205426864 G
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          223907 1 +    245036 G
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100114 1 -  86207423 G
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204256793 1 - 204787373 G
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    155999 1 - 192460366 G
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175495 1 -  11645122 G
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          160763 1 -   6739814 G
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50522 1 - 101219884 G
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          172952 1 -    785044 g
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           61996 1 -  10971483 g
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4115077 1 -   9889416 G
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28778776 1 -  39895921 G
i canFam3.chr31                C 0 C 0
e micMur3.chr31                 30860556 2 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e otoGar3.GL873528              20742548 2 +  38779656 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924 6 +  14377064 I
e saiBol1.JH378168              10918542 0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=387726.000000
s hg38.chr14_GL000009v2_random    163022  50 +    201709 --------------------------------------------agctatatgca----------------atggttgaaatctctgctctgtactagcaatttagctgt
s panTro5.chr9                  41853344  50 + 116767853 --------------------------------------------AGCTATATGCA----------------ATGGTTGAAATCTCTGCTCTGTACTAGCAATTTAGCTGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814423  50 + 205426864 --------------------------------------------AGCTATGTGCA----------------ATGGTTGAAATCTCTGCTCTGTACTAGCAATTTAGCTGT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          223908  50 +    245036 --------------------------------------------AGCTATATGCA----------------ATGGTTGAAATCTCTGCTCTGTACTAGCAATTTAGCTGT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100115  50 -  86207423 --------------------------------------------AGCTATATGCA----------------ATGGTTGAAATATCTGCTCTGTACTAGcaatttagctgt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204256794  50 - 204787373 --------------------------------------------AGCTACATGCA----------------GTGGTTGAAATCTCTGCTCTGTACTAGCAATTTAGCTGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156000  50 - 192460366 --------------------------------------------AGCTACATGCA----------------GTGGTTGAAATCTCTGCTCTGTACTAGCAATTTAGCTGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175496  50 -  11645122 --------------------------------------------AGCTACATGAA----------------GTGGTTGAAATCTCTGCTCTGTACTAGCAATTTAGCTGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          160764  50 -   6739814 --------------------------------------------AGCTACATGCA----------------GTGGTTGAAATCTCTGCTCTGTACTAGCAATTTAGCTGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50523  50 - 101219884 --------------------------------------------AGCTACATGCC----------------GTGGTTGAAATCTCTGCTCTGTACTAGCAGTTTAGCTGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          172953  50 -    785044 --------------------------------------------agctacatgca----------------gtggttgaaatctctgctctgtactagcaatttagctgt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           61997  50 -  10971483 --------------------------------------------agctatatgca----------------gtggttgaaatctctgctctgtactagcaatttagctgt
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4115078  50 -   9889416 --------------------------------------------AGCTATATGCA----------------ATGATTGAAATCTCTGCTCTGTACTAGCAATTTATCTGT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30860558  50 -  47401472 --------------------------------------------aagtatatgca----------------gcagttgaaacctctgccctattctaatcatgcagcagt
i micMur3.chr31                I 2 C 0
s otoGar3.GL873528              20742550  48 +  38779656 --------------------------------------------AAG--TCTGCA----------------GCAGTTGAAAGCTCTGTCCTGCTCCAGCCGTTCAGCTGT
i otoGar3.GL873528             I 2 C 0
s canFam3.chr31                 28778777 110 -  39895921 AGatttaaaaaattattttaaatCCTGATTATAAAAATCATAGTAACTCATTGTAGTAACAGTGCTGAATGGTGGATGAAATCTATGCTCTATGCCTGTCCCtcagatat
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924   6 +  14377064 I
e saiBol1.JH378168              10918542   0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=113251.000000
s hg38.chr14_GL000009v2_random    163072 11 +    201709 tgttttctgct
s panTro5.chr9                  41853394 11 + 116767853 TGTTTTCTGCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814473 11 + 205426864 TGTTTTCTGCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          223958 11 +    245036 TGTTTTCTGCT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100165 11 -  86207423 tgttttctgct
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204256844 11 - 204787373 TGTTTTCCGCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156050 11 - 192460366 TGTTTTCCGCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175546 11 -  11645122 TGTTTTCCACT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          160814 11 -   6739814 TGTTTTCCGCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50573 11 - 101219884 TGTTTTCCACT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173003 11 -    785044 tgttttccgct
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62047 11 -  10971483 tgttttctgct
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4115128 11 -   9889416 TGTTTTCTGCT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30860608 11 -  47401472 tggtttctgct
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20742598 11 +  38779656 TGCTTTCTACT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22684582 11 -  98207768 TGATTTCTACA
i mm10.chr16                   N 0 C 0
s canFam3.chr31                 28778887 11 -  39895921 tgctttctgct
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7646924  6 +  14377064 I
e saiBol1.JH378168              10918542  0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=1304245.000000
s hg38.chr14_GL000009v2_random    163083 131 +    201709 ggattctatggagtctc-ttttatgaatgtgaaatgtagcagccat---------------------------------------catatatctgaatgaagtt------taagtgctgattttagatttttac--tct-----gtgacattctc----ctctgtgactttc----AGTTGTGTGAGATTT-C
s panTro5.chr9                  41853405 133 + 116767853 GGATTCTATGGAGTCTCTTTTTATGAATGTGAAATGTAGCAGCCAT---------------------------------------CATATATCTGAATGAAGTT------TAAGTGCTGATTTTAGATTTTTAC--TCT-----GTGACATTCTC----CTCTGTGACTTTC----AGTTGTGTGAGATTTCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814484 133 + 205426864 GGATTCTATGGAGTCTCTTTTTATGAATGTGAAATGTAGCAGCCAT---------------------------------------CATATATCTGAATGAAGTT------TAAGTGCTGATTTTAGATTTTTAC--TCT-----GTGACATTCTC----CTCTGTGACTTTC----AGTTGTGTGAGATTTCC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          223969 133 +    245036 GGATTCTATGGAGTCTCTTTTTATGAATGTGAAATGTAGCGGCCGT---------------------------------------GATATATCTGAATGAAGTT------TAAGTGCTGATTTTAGATTTTTAC--TCT-----GTGACATTCTC----CTCTGTGACTTTC----AGTTGTGTGAGATTTCC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100176 132 -  86207423 ggattctatggagtctctttttatcaatgtgaaatgtagcagccgt---------------------------------------catatatctgaatgaagtt------taagtgctgattttagatttttac--tct-----gtgacattctc----c-ctgtgacttcc----acatgtgtgagatttcc
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204256855 133 - 204787373 GGATTCTATGGAGTCTCTTTTTATGAATGTGCAATGTAGCAGCCAT---------------------------------------CATATATCTGAATGAAGTT------TAAGTGCTGATTTTAGATTTTTAC--TCA-----GTGACAGTCTC----CTCTGTGACTTTC----CCTTGTGTGAAATTTCC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156061 133 - 192460366 GGATTCTATGGAGTCTCTTTTTATGAATGTGCAATGTAGCAGCCAT---------------------------------------CATATATCTGAATGAAGTT------TAAGTGCTGATTTTAGATTTTTAC--TCA-----GTGACAGTCTC----CTCTGTGACTTTC----CCTTGTGTGAAATTTCC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175557 133 -  11645122 GGATTCTATGGAGTCTCTTTTTATGAATGTGCAATGTAGCAGCCAT---------------------------------------CATATATCTGAATGAAGTT------TAAGTGCTGATTTTAGATTTTTAC--TCA-----GTGACAGTCTC----CTCTGTGACTTTC----CCTTGTGTGAAATTTCC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          160825 133 -   6739814 GGATTCTATGGAGTCTCTTTTTATGAATGTGCAATGTAGCAGCCAT---------------------------------------CATATATCTGAATGAAGTT------TAAGTGCTGATTTTAGATTTTTAC--TCA-----GTGACAGTCTC----CTCTGTGACTTTC----CCTTGTGTGAGATTTCC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50584 133 - 101219884 GGATTCTATGGAGTCTCTTTTTATGAATGTACAATGTAGCAGCCAT---------------------------------------CATATATCTGAATGAAGTT------TAAGTGCTGATTTTAGATTTCTAC--TCA-----GTGACAGTCTC----CTCTGTGACTTTC----CCTTGTGTGAGATTTCC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173014 133 -    785044 ggattctatggagtctctttttatgaatgtgcaatgtagcagccat---------------------------------------cacatatctgaatgaagtt------taagtgctgattttagatttttac--tca-----gtgacagtctc----ctctgtgactttc----ccttgtgtgagatttcc
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62058 133 -  10971483 ggattctatggagtctctttttatgaatgtgtaatgtagcagccat---------------------------------------catatatctgaatgaagtt------taagtgctgattttagatttttac--tca-----gcgacagtctc----ctctgtgactttc----ccttgtgtgagatttcc
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918542 133 -  13128814 GGATTCTAtggagtctcttcttatgaatgtgcagtgtagcagctat--------------------------------------ccatatatctaaatgaagtg------tatgtgctgattttagatctttat--tcttt---gtgacattctt----ctttgtgac--tg----atttgtgtaagatttc-
i saiBol1.JH378168             C 0 I 1
s cebCap1.NW_016107322v1         7646930 135 +  14377064 GGATTCTATGGAGTCTCTTTTTATGAACGTGCAGTGTAGCAGCCAT--------------------------------------CCATATATCTAAATGAAGTG------TATGTGCTGATTTTAGATCTTTAT--TCTTT---GTGACATTCTT----CTCTGTGACTTTG----ATTTGTGTAAGATTTC-
i cebCap1.NW_016107322v1       I 6 I 1
s aotNan1.NW_018487195v1         4115139 138 -   9889416 GGATTCTATGGAGTCTCTTTTTATGAATGTGCAGTGTAGCAGCCAT--------------------------------------CCATATATCTAAATGAAGTA------TATGTGCTGATTTTAGATCTTTAT--TCTTTGTGGTGACATTCTT----CTCTGTGACTTTG----ATTTGTGTAAGATTTC-
i aotNan1.NW_018487195v1       C 0 I 24
s micMur3.chr31                 30860619 135 -  47401472 gtagtctatggagtctc-ttttatatatctgcaatttaagagccgc--------------------------------------ccatatatctgaattgagtt------tacaagtggattttagatctttac--tctct---gtgacattctc----ttctttgattttc----ACTGGTATGGGATTCCC
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20742609 183 +  38779656 ACACTCTGTGGAGTCTC-TTTTATATTTGTGCACATTAGGAGCCACCGTATACAGGTGGCAATTGCACATGCACTTTATCGACACCCTGTATATGAGTTGAGTTCAGTTGCACATGTAGATTTCAGACCTTTAC--CCTGT---GTGACATTCTCGAGACCTTTTGACTTTT----ACTGGTATGGGATTCCC
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22684593 127 -  98207768 TGGATAGGTGGAATC---TTGTCTGCAGGCGCAGTTTAGAGACTTC--------------------------------------ACGTATTTCCAGATGGAGTT------TACCTTTGGTTCTTGG--CTCTAC--TCT-----GATTCATTC-C----TGGTGTGATATGC----ACTTCCATTGGATTCC-
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28778898 137 -  39895921 gggatctatggagtatc-ctcaatgcatgtgcaacttaatagtcac---------------------------------------cgta-atctggatggagtt------tatatgaatatttcagatcttcaccatct-----gtgacattttc----ttctatgactttcacttacttgtatgggattctc
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=126269.000000
s hg38.chr14_GL000009v2_random    163214 16 +    201709 TCCCATGTCATTCAAA
s panTro5.chr9                  41853538 16 + 116767853 TCCCATGTCATTCAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814617 16 + 205426864 TCCCATGTCACACAGA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224102 16 +    245036 TCCCATGTCACACAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100308 15 -  86207423 tcccatg-cactcaaa
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204256988 16 - 204787373 TCCCATGTCACTCAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156194 16 - 192460366 TCCCATGTCACTCAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175690 16 -  11645122 TCCCATGTCACTCAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          160958 16 -   6739814 TCTCATGTCACTCAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50717 16 - 101219884 TCCCGTGTCACTCAGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173147 16 -    785044 tcccatgtcactcaaa
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62191 16 -  10971483 tcccatgtcactcaaa
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918676 16 -  13128814 tctcagatcactgaaa
i saiBol1.JH378168             I 1 C 0
s cebCap1.NW_016107322v1         7647066 16 +  14377064 TCTCAGATCACTCGAA
i cebCap1.NW_016107322v1       I 1 C 0
s micMur3.chr31                 30860754 15 -  47401472 TCCCACTCCACTCAA-
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20742792 15 +  38779656 TCCCACTCCACTCAA-
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22684721 15 -  98207768 TCCCATTTCTCTCCA-
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 28779035 15 -  39895921 tcccactccactcaa-
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4115277 24 -   9889416 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=1832213.000000
s hg38.chr14_GL000009v2_random    163230 181 +    201709 TTTCCCAGTTCTTCTTTTCTGTCAGCCTGGAACTCTGTAC--------TCTTATTCCTCAGGCTAGTA-AAACTCACGGCTTTACTCTTAGACATCTAATTTTGCA-CAGACTGGGAAGTGTCATCAGGTGTGAAGTTACATTGATGCAAATTTAAATCATTGCAATTTTCTTTATTCAGTGGTCAAATAC
s panTro5.chr9                  41853554 181 + 116767853 TTTCCCAGTTCTTCTTTTCTGTCAGCCTGGAACTCTGTGC--------TGTTATTCCTCAAGCTAGTA-AAACTCACCGCTTTACTCATAGACATCTAATTTTGCA-CAGACTGGGAAGTGTCAGCAGGTGTGAAGTTGCATTGATGCAAATGTAAATCATTGCAATTTTCTTTATTCAATGGTCAAATAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814633 180 + 205426864 TTTCCCAGTTCTTCTTTTCTGTCAGCCTGGAACTCTGTGC--------TCTTA-TCCTCAAGCTAGTA-AAACTCATCGCTTTACTCGTAGACATCTAATTTTGCA-CAGACCAGGGAGTGTCATCAGGTGTGAAGTTGCATTGATGCAAATTTAAATCATTGCAATTTTCTTTATTCAATGGTCAAATAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224118 181 +    245036 TTTCCCAGTTCTTCTTTTCTGTCAGCCTGGAACTCTGTGC--------TCTTATTCCTCAAGCTAGTA-AAACTCACCGCTTTACTCGCAGACATCTAATTTTGCA-CAGACCAGGGGGTGTCATCAGGTATGAAGTTGCACTGATGCAAATTTAAATCATTGCAATTTTCTTTATTCAATGGTCAAATAC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100323 181 -  86207423 tttcccagttcttcttttctgtcagcctggaactctgtgc--------tcttattcctcaagctagta-gaactcactgctttactcgtagacatccaattttgca-cagaccagggagtgtcatcaggtgtgaagctgcattgatgcaaatttaaatcattgcaattttttttattcaatggttaaaaac
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257004 181 - 204787373 TTTCCCAGTTCTTCTTTTGTGTCAGCTTGGAAGTCTGTAC--------TCTTATTCCTCAAACCAGTA-AAACTCACCGCTTTACTTGTAGACATCCAATTTTGCA-CAGCCCGGGGAGTGTCATCAGGTGTAAAGTTGCATTAATGCAAATTTAAATCATTGCAATTTTCTTTATTCAATGGTCAAATAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156210 181 - 192460366 TTTCCCAGTTCTTCTTTTGTGTCAGCTTGGAAGTCTGTAC--------TCTTATTCCTCAAACCAGTA-AAACTCACCGCTTTACTTGTAGACATCCAATTTTGCA-CAGCCCGGGGAGTGTCATCAGGTGTAAAGTTGCATTAATGCAAATTTAAATCATTGCAATTTTCTTTATTCAATGGTCAAATAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175706 181 -  11645122 TTTCCCAGTTCTTCTTTTGTGTCAGCTTGGAAGTCTGTAC--------TCTTATTCCTCAAACCAGTA-AAACTCACCGCTTTACTTGTAGACATCCAATTTTGCA-CAGCCCGGGGAGTGTCATCAGGTGTAAAGTTGCATTAATGCAAATTTAAATCATTGCAATTTTCTTTATTCAATGGTCAAATAC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          160974 181 -   6739814 TTTCCCAGTTCTTCTTTTGTGTCAGCTTGGAAGTCTGTAC--------TCTTATTCCTCAAACCAGTA-AAACTCACTGCTTTACTTGTAGACATCCAATTTTGCG-CAGACCGGGGAGTGTCATCAGGTGTAAAGTTGCATTAATGCAAATTTAAATCATTGCAATTTTCTTTATTCAGTGCTCAAATAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50733 181 - 101219884 TTTCCCAGTTCTTCTTTTGTGTCAGCGTGGAAGTCTGTAC--------TCTTATTCCTCAAACCAGTA-AAACTCACCACTTTACTTGTAGACATCCAATTTTGCA-CAGACCGGGGAGTGTCATCAGGTGTAAAGTTGCATTAACGCAAATTTAAATCATTGCAATTTTCTTTATTCAATGGTCAAATAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173163 181 -    785044 tttcccagttcttcttttgtgtcagcttggaagtctgtac--------tcttattcctcaaaccagta-aaactcaccgctttgcttgtagacatccaattttgca-cagaccggggagtgtcatcaggtgtaaagttgcattaatgcaaatttaaatcattgcaattttctttattcaatggtcaaATAC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62207 181 -  10971483 tttcccagttcttcttttgtgtcagcttggaagtctgtac--------tcttattcctcaaactagta-aaacTCACCGCTTTACTTGTAGACATCCAATTTTGCA-CAGACCGGGGAGTGTCATCAGGTGTAAAGTTACATTAATGTAAATTTAAATCATTGCAATTTTCTTTATTCAATGGTCAAATAC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918692 175 -  13128814 tttcccagatcttcttttctgtcagcctggaactctgtac--------tcttattcctcaagctagta-aaactcaccactttactcgtagacatca-ggtatgcaccagaccagagagtgtccttaggtgtaaagttgcattaatgcaaatttaaaccattgcagttttcttctttcggtggtc------
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647082 181 +  14377064 TTTCCCAGCTCTTCTTTTCTGTCAGCCTGAAACTCTGTAC--------TCTTATTCCTCAAGCTAGTG-AAACTCATCACTTTACTCGCAGACATCC-ATATTGGACCAGACCTGAGAGTGTCCTTAGGTGTAAAGTTGCATTAATGCAAATTTAAACCATTGCAGTTTTCTTCTTTCAGTGGTCAAATAC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4115301 180 -   9889416 TTTCCCAGCTCTTCTTTTCTGTCAGCCTGGAATTCTGTAG--------TCTTATTCCTGAAGCTAGTA-AAA--TACCACTTTACTCGTAGACATCCAGTATTGCACCAGACCAGAGAGTGTCCTTAGGTGTAAAGTTGCATTAATGCAAATTGAAACCATTGCAGTTTTCTTCTTTCAGTGGTCAAATAC
i aotNan1.NW_018487195v1       I 24 I 16
s micMur3.chr31                 30860769 180 -  47401472 TTTCCCCACTCATTTGTTCCATCGGCCTAGGAATCTGTAT--------TCTTATTACTGAAGCTAGTA-AAATTCTCTGCTTTACTTGTAGACATTTAATTTTGCA-CAGACTGAGTAGTGTCATCAGATATACAGCTGTATTAATGCAAATTTAAACCATTGCAGTTATCTTCTTTCAATGTTCGAATA-
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20742807 168 +  38779656 TTTCTCCCTCAGTTTGACCCA----CCTAAAACTCCATGCCATACTCATCTTCATACT------------CATTCTCTGCTTTGCTAGTAGATACTCAATTTTGCC-CAGACTGGATGATGTCATCAT-TATAAAACTGCATAAATGCAAATCTAAACCTTTGCAG-----TTCTTTCAGGGTTGGATTAC
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22684736 169 -  98207768 TTCCTCAGATTGGTAGTTCTGTCTACTC---AATCTCTGC--------TCTAATTTCTTGAGCTTGTA-AGATGTCCTGTCTCATCTGAAGACTTCTCGTGTCTCC-CAGAATGG--AGTGTCATCTGGTGCAAAGTTGCATCCAAAC--ACTGAAACCAGTTCCATAAGTTTCCTTCAA-----AGATAT
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28779050 178 -  39895921 tttcccagttcttctgttttgttagcttggaactctgtgc--------tcatactcctcacactggaataaaattgctgctccagttgtagccatccagttcttca--agactgc--agtgtcatcaggtagaaagctgcagtaaagcacactt-aatcagagcagttatcttcctttgatggtcaagtat
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=104339.000000
s hg38.chr14_GL000009v2_random    163411 13 +    201709 TTCATCAGTGGTT
s panTro5.chr9                  41853735 13 + 116767853 TTCATCAGTGGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814813 13 + 205426864 TTCATCAGTGGTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224299 13 +    245036 CTCATCAGTGGTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100504 13 -  86207423 ttcatcagtggtc
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257185 13 - 204787373 TTCATCAGTGGTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156391 13 - 192460366 TTCATCAGTGGTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175887 13 -  11645122 TTCATCAGTGGTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161155 13 -   6739814 TTCATCAGTGGTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50914 13 - 101219884 TTCATCAGTGGTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173344 13 -    785044 TTCATCAGTGGTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62388 13 -  10971483 TTCATCAGTGGTT
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7647263 13 +  14377064 TTTGTCAATGGTT
i cebCap1.NW_016107322v1       C 0 I 3
s micMur3.chr31                 30860949 12 -  47401472 -CTGTTTATGGTT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20742975 13 +  38779656 TCTGTTAATGTTT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22684906 12 -  98207768 TCCATCA-TGCCT
i mm10.chr16                   I 1 I 1
s canFam3.chr31                 28779228 13 -  39895921 tcagtcattggat
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4115481 16 -   9889416 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e saiBol1.JH378168              10918867  0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=323708.000000
s hg38.chr14_GL000009v2_random    163424 48 +    201709 GAATATTC-TACTATTTCTGCCTGTTTTCTGTTTCTCATTACCATCAAA
s panTro5.chr9                  41853748 48 + 116767853 GAATATTC-TACTATTTCTGCCTGTTTTCTGTTTCTCATTACCATCAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814826 48 + 205426864 GAATATTC-TAGTATTTCTGCCTGTTTTCTGTTTCTCATTACCATCAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224312 48 +    245036 GAATATTC-TAGTATTTCTGCCTGTTTTCTGTTTCTCATTACCATCGAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100517 45 -  86207423 aaatattc----tatttctgcctattttctgtttcttattaccatcaaa
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257198 48 - 204787373 GAATATTC-TACTATTTCTTCCTATTTTCTGTTTCTCATTACCATCAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156404 48 - 192460366 GAATATTC-TACTATTTCTTCCTATTTTCTGTTTCTCATTACCATCAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175900 48 -  11645122 GAATATTC-TACTATTTCTTCCTATTTTCTGTTTCTCATTACCATCAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161168 48 -   6739814 GAATATTC-TACTATTTCTTCCTATTTTCTGTTTCTCATTACCATCAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50927 48 - 101219884 GAATATTC-TACTATTTCTTCCTATTTTCTGTTTCTCATTACCATCACA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173357 48 -    785044 GAATATTC-TACTATTTCTTCCTATTTTCTGTTTCTCATTACCATCATA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62401 48 -  10971483 GAATATTC-TACTATTTCTTCCTATTTTCTGTTTCTCATTACCATCAAa
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918867 15 -  13128814 aaatactc-t---------------------------------GTCAAT
i saiBol1.JH378168             C 0 C 0
s micMur3.chr31                 30860961 49 -  47401472 GAATACTCTTAGTATTTCTGCCAATTTTCTGTTTTTCATTACCATCAAA
i micMur3.chr31                C 0 I 138
s otoGar3.GL873528              20742988 43 +  38779656 GAA------TAATACTTCTATCAGTTTTCTACTTTTCATTACTGAGAAG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22684919 46 -  98207768 AGACACTC-TGACA-TTCTGCCTTCTAACAGTTGCT-GGTACTACGTAA
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 28779241 43 -  39895921 gaatattc-tgat-tttctgcctattt----ttcccccataacatcaaa
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4115481 16 -   9889416 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7647276  3 +  14377064 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=6368.000000
s hg38.chr14_GL000009v2_random    163472 19 +    201709 ----TGTGTAT--TTAATTT------TTTTT
s panTro5.chr9                  41853796 19 + 116767853 ----TGTGTAT--TTAATTT------TTTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814874 19 + 205426864 ----TGTGCAT--TTAATTT------TTTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224360 19 +    245036 ----TGTGTAT--TTAATTT------TTTTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100562 17 -  86207423 ----tgtgtat--tt--ttt------ttttt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257246 17 - 204787373 ----TATATAT--ATA--TA------TTTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156452 17 - 192460366 ----TATATAT--ATA--TA------TTTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175948 19 -  11645122 ----TATATATAGATA--TA------TTTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161216 16 -   6739814 ----TATATAT--ATA--T-------TTTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50975 19 - 101219884 ----TATATAT--ATA--TA----TATTTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173405 14 -    785044 ----TATATAT--AT-----------TTTTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62449 23 -  10971483 ----tatatat--ata--tatatatatTTTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918882  9 -  13128814 ----GGTTTAC--TT----------------
i saiBol1.JH378168             C 0 C 0
s otoGar3.GL873528              20743031 18 +  38779656 ----TATGC-T--TTAAATT------TTTGG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22684965 19 -  98207768 ----TGTGGTT--TCTACTT------TTTAA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28779284 23 -  39895921 tatgtgtgtat--tttattt------ttatt
i canFam3.chr31                C 0 I 221
e micMur3.chr31                 30861010 138 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4115481 16 -   9889416 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7647276  3 +  14377064 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=365789.000000
s hg38.chr14_GL000009v2_random    163491 56 +    201709 AGAGTTAATAGTTTTTTTTCCCTGCATTTG----AGTTAGACCTGAGCTACTACCACATT
s panTro5.chr9                  41853815 55 + 116767853 AGAGTTAATAG-TTTTTTTCCCAGCATTTG----AGTTAGACCTGAGCTACTACCACATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814893 55 + 205426864 AGAGTTTATAG-TTTTTTTCCCTGCATTTG----AGTTAGACATGAGCTACCACCACATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224379 55 +    245036 AGAGTTTAAAG-TTTTTTTCCCTGCGTTTG----AGTTAGACATGAGCTACTACCACATT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100579 55 -  86207423 agagtttatag-tttttttccctgcatttg----agttagacatgagctactaccacATT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257263 55 - 204787373 AGAGTTTATGT-TTTTTTCCTCTGCATTTG----AGTTAGACATGAGCTACTACCACGTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156469 55 - 192460366 AGAGTTTATGT-TTTTTTCCTCTGCATTTG----AGTTAGACATGAGCTACTACCACATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          175967 55 -  11645122 AGAGTTTATGT-TTTTTTCCTCTGCATTTG----AGTTAGACATGAGCTACTACCACATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161232 55 -   6739814 AGAGTTTATGT-TTTTTTCCTCTGCATTTG----AGTTAGACATGAGCTACTACCACATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    50994 55 - 101219884 AGAGTTTATGT-TTTTTTCCTCTGCATTTG----AGTTAGACATGAGCTACTACCATATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173419 54 -    785044 AGAGTTTATGT-TTTTTT-CTCTGCATTTG----AGTTAGACATGAGCTACTACCACATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62472 55 -  10971483 AGAGTTTATGT-TTTTTTCCTCTGCATTTG----AGTTAGACATGAGCTACTACCACATT
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20743049 54 +  38779656 AGTGTTTATAA--TTTTTCCTCTACATCTG----AGTTAGATATGCTCTCCTACTACATT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22684984 53 -  98207768 TGAGGTCTTGG-TTTTTGCCTTTGAAATCA----A--TGAATTTGGACTACTCTGTCAAT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28779528 58 -  39895921 AGAGTTTATAA--TTTTTCCTCTGCATTTGGGTTAGTCAGATGTGAGCTGCTAGCACATC
i canFam3.chr31                I 221 I 1
e micMur3.chr31                 30861010 138 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4115481 16 -   9889416 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e cebCap1.NW_016107322v1         7647276  3 +  14377064 I
e saiBol1.JH378168              10918891  0 -  13128814 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=576012.000000
s hg38.chr14_GL000009v2_random    163547 66 +    201709 TTGTAATTCAAACTTTTTGTCTAACAAT--GTTTTAAAAAA-CTCTTTATTTGGAGGGAATTCTCAAAT-
s panTro5.chr9                  41853870 66 + 116767853 TTGTAATTCAAACTTTTTGTCTAACAAT--GTTTTTAAAAA-CTCTTTATTTGGAGGGAATTGTCAAAT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77814948 66 + 205426864 TTGTAATTCAAACTTTTTGTCTAACAGT--GTTTTAAAAAA-CTCTTTATTTGGAGGGAATTCTCAAAT-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224434 66 +    245036 TTGTAATCCAAACTTTCTGTCTAAAAAT--GTTTTAAAAAA-CTCTTTATTTGGAGGGAATTCTCAAAT-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100634 62 -  86207423 TTGTAATTCAAACTTTTTGTCTAACAGT--GTTTTAAAAAA-C----TATTTGGAGGGAATTCTCAAAT-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257318 66 - 204787373 TTGTAATTCAAAC-ATTTGTCTAACAAT--GTTTAAAAAAAACTCTTTATTTGGAGGGAATTCTCAAAT-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156524 67 - 192460366 TTGTAATTCAAACTTTTTGTCTAACAAT--GTTTAAAAAAAACTCTTTATTTGGAGGGAATTCTCAAAT-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176022 67 -  11645122 TTGTAATTCAAACTTTTTGTCTAACAAT--GTTTAAAAAAAACTCTTTATTTGGAGGGAATTCTCAAAT-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161287 67 -   6739814 TTGTAATTCAAACTTTTTGTCTAACAAT--GTTTAAAAAAAACTCTTTATTTGGAGGGAATTCTCAAAT-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51049 67 - 101219884 TTGTAATTCAAACTTTTTGTCTAACAAT--GTTTTAAAAAAACTCTTTATTTGGAAGGAATTCTCAAAT-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173473 67 -    785044 TTGTAATTCAAACTTTTTGTCTAGCAAG--GTCTAAAAAAAACTCTTTATTTGGAGGGAATTCTCAAAT-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62527 67 -  10971483 TTGTAATTCAAACGTTTTGTCTAACAAT--GTTTAAAAAAAGCTCTTTATTTGGAGGGAATTCTCAAAT-
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918891 61 -  13128814 --GTAATTCAAATTTTTTGTCTAACAAC--ATTGAAAAAAAAC----TATTTGAAGGGAATTCTCAAAG-
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647279 67 +  14377064 TTGTAATTCAAATTTTTTGTCTAACAAC--ATTTAAAAAAAACTGTTTATTTGGAGGGAATTCTCAAAG-
i cebCap1.NW_016107322v1       I 3 C 0
s aotNan1.NW_018487195v1         4115497 65 -   9889416 TTGTAATTCAAATTTTTTGTCTAACAAC--ATT--AAAAAAACTGTTTATTTGGAGGGAATTCTAAAAG-
i aotNan1.NW_018487195v1       I 16 C 0
s otoGar3.GL873528              20743103 65 +  38779656 TTGTAATTACAACTTTTTGTCTACCAA---GTTTGGGAAAACCTGTCTGTATTTAAGGAATTTTCCAT--
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22685037 66 -  98207768 TTATGATTGAAACCCCATTTATAAAATTTAGGGGAAAAAAATCTCTATATTTGGAG---ACTTCCAAAT-
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28779587 67 -  39895921 TTGTAATGTAAActttctgtctctcatc--ttttgaaaaac-ctctctctatttaagaaatttcccaagc
i canFam3.chr31                I 1 C 0
e micMur3.chr31                 30861010 138 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=696050.000000
s hg38.chr14_GL000009v2_random    163613 60 +    201709 TTCTAAATAC-TCTACAAACATTAGGATCAGGGCTCACATTCACAGTTTCCCTTGTAGCCA
s panTro5.chr9                  41853936 60 + 116767853 TTCTAAATAC-TCTACAAACTTTAGGATCAGGGCTCACATTCCCAGTTTCCCTTGTAGCCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815014 60 + 205426864 TTCTAAATAC-TCTACAAACATTAGGATCAGGGctcacattcccagtttcccttgtagcca
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224500 60 +    245036 TTCTAAATAC-TCTACAAACATTAGGATCAGGGctcacattcccagtttcccttgtagcca
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100696 60 -  86207423 TTCTAAATAC-TCTACAAACATTAGGATTGGGGCTCAAATTCCCAGTTTCCCTTGTAGCCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257384 60 - 204787373 TTCTAAATAC-TCTGCGAACATTAGGATCAGGGCTCAAATTCCCAGGTTTCCTTGTAACCG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156591 60 - 192460366 TTCTAAATAC-TCTGCGAACATTAGGATCAGGGCTCAAATTCCCAGGTTTCCTTGTAACCG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176089 60 -  11645122 TTCTAAATAC-TCTGCGAACATTAGGATCAGGGCTCAAATTCCCAGTTTCCCTTGTAACCG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161354 60 -   6739814 TTCTAAATAC-TCTGCGAACATTAGGATCAGGGCTCAAATTCCCAGTTTCCCTTGTAGCCG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51116 60 - 101219884 TTCTAAATAC-TCTGCGAACATTAGGATCAGGGCTCAAATTCCCAGTTTCCCTTGTAGCCG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173540 60 -    785044 TTCTAAATAC-TCTGCGAACATTAGGATCAGGGCTCAAATTCCCAGTTTCCCTTGTAGCCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62594 60 -  10971483 TTCTAAATAC-TCTGCGAACATTAGGATCAGGGctcaaattcccagctccccttgcagcca
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10918952 60 -  13128814 TTCTAAATAC-TCTGCAAATATTAGAATCAGGGCTCAAATTCCCAGTTTCCTTTGTAGCCA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647346 60 +  14377064 TTCTAAATAC-TCTGCAAACATTAGAATCAGGGCTCAAATTCCCAGTTTCCTTTGTAGCCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4115562 60 -   9889416 TTCTAAATAC-TCTGCAAACATTAGAATCAGGGCTCAAATTCCTAGTTTCCTTTGTAGCCA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30861148 60 -  47401472 TTCTGAATCC-TCTGCAAACATTAGAATCAGGGCTCAAATTCCCAATTTCCCTTGTAGCCA
i micMur3.chr31                I 138 I 110
s otoGar3.GL873528              20743168 60 +  38779656 TTATGAATCC-TTTGGAAAAATTAGAATCAGGGTTGAAATTTCCAATTTCCTTTGGAGGCT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22685103 60 -  98207768 -TCTGAATGTGTCTGAAATATCTAGGACAAAGGAATGCATTCTTAATTTTCCTCATAGCTA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28779654 57 -  39895921 tgtgaattcc-tctgtaaaat---gaagcaaggctcaaatcctctatttcctttgtaggca
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=622795.000000
s hg38.chr14_GL000009v2_random    163673 61 +    201709 GATGTGCATATG--GAACATGGCCTCAGCTAATGAAGCATACCCACATATTTGAAAGTAAGAA
s panTro5.chr9                  41853996 61 + 116767853 GATGTACATATG--GAACATGGCCTCAGCTAATGAAGCATACCCACATATTTGAAAGTAAGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815074 61 + 205426864 gatgtgcatatg--aaacatggcctcagctaattaagcatacccacATATTTGAAAGTAAGAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224560 61 +    245036 gatgtgcatatg--aaacatggcctcagctaattaagcatacccacATATTTGAAAGTAAGAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100756 61 -  86207423 GATGTGCGTATG--AAACATGGCCTCAGCTAATTAAGCATACCCACATATTTGAAAGTAAGAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257444 61 - 204787373 GATGTGCATATG--AAACATGGCCTCAGCTAATTAAGCATACCGACATATTTGAAAGTAAGAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156651 61 - 192460366 GATGTGCATATG--AAACATGGCCTCAGCTAATTAAGCATACCGACATATTTGAAAGTAAGAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176149 61 -  11645122 GATGTGCATATG--AAACATGGCCTCAGCTAATTAAGCATACCGACATATTTGAAAGTAAGAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161414 61 -   6739814 GATGTGCATATG--AAACATGGCCTCGGCTAATTAAGCATACCGACATATTTGAAAGTAAGAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51176 61 - 101219884 GATGTGCATATG--AAACATGGTCTCAGCTAATTAAGCATACCGACATATTTGAAAGTAAGAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173600 61 -    785044 GATGTGCATATG--AAACATGGCCTCAGCTAATTAAGCATACCGACATACTTGAAAGTAAGAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62654 61 -  10971483 gatgtgcatatg--aaacatggcctcagctaattaaacgtaccGACATATTTGAAAGTAAGAC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10919012 63 -  13128814 GATGTGCATATGAAAAACATAGCCTCAGGTAATTAAACATACCCACATATTTAAAAGTAAGAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647406 63 +  14377064 GATGCGCATATGAAAAACATAGCCTCAGCTAATTAAACATACCCACATATTTAAAAGTAAGAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4115622 63 -   9889416 GATGTGCATATGAAAAACATAGCCCCAGCTAATTAAACATACCTACATATTTAAAAGTAAGAA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20743228 59 +  38779656 GATGTGGATATG--AAACCTACTCTACACGAATCAGGCAT--CCACACGTGTGACAGTAGTAA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22685163 60 -  98207768 AGTATGCATGTG--AAATGTAAGCTCTGCTCCTCAGATGTTCCTACAATTGTGGAAG-AATTA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28779711 61 -  39895921 gatgtgcacttg--aatcttaggttcagctaatcagacatactcatgcATTTGAAAGTATGAA
i canFam3.chr31                C 0 C 0
e micMur3.chr31                 30861208 110 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e dasNov3.JH568778               6672115 1363 +   6883506 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=430640.000000
s hg38.chr14_GL000009v2_random    163734 56 +    201709 AAGTGTTAAGAGGAAC----TG----TAGATATCATTTTAGTTGACGCAAGGATGG----AAAAAAAA
s panTro5.chr9                  41854057 54 + 116767853 AAGTGTTAAGAGGAAC----TG----TAGATATCATTTTAGTTGATGCAAGGATGG------AAAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815135 56 + 205426864 AAGTGTTAAGAGGAAC----TG----TATATATCATTTTAGTTGATGCAAGGGTGG----AAAAAAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224621 55 +    245036 AAGTGTTAAGAGGAAC----TG----TAGATATCATTTTAGTTGATGCAAGGGTGG-----AAAAAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100817 55 -  86207423 AAGTGTTAAGAGGAAC----TA----TAGATATCATTTTAGTTGATTCAAAGATGG-----AAAAAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257505 57 - 204787373 AAGTGTTAAGATGCAC----CG----TAGAGATCATTTTAGTGGATGTGAGGATGG---AAAAAAAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156712 57 - 192460366 AAGTGTTAAGATGCAC----CG----TAGAGATCATTTTAGTGGATGTGAGGATGG---AAAAAAAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176210 60 -  11645122 AAGTGTTAAGATGCAC----CG----TAGAGATCATTTTAGTGGATGTGAGGATGGAAAAAAAAAAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161475 58 -   6739814 AAGTGTTAAGATGCAC----TG----TAGAGATCATTTTAGTGGATGTGAGGATGG--AAAAAAAAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51237 54 - 101219884 AAGTGTTAAGATGCAC----CG----TAGAGATCATTTTAGTGGATGTGAGGATGG------AAAAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173661 57 -    785044 AAGTGTTAAGATGCAC----CG----TAGATATCATTTTAGTGGATGCGAGGATGG---AAAAAAAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62715 55 -  10971483 AAGTGTTCAGAGGCAC----TG----TAGAGATCATTTTAGTGGATGCGAGGATGG-----AAAAGAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10919075 56 -  13128814 AAGTGTTAAGAGGCAC----TG----TAGATATCATTTTAGTTGATGCAAGAATGG----GGGGAGAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647469 56 +  14377064 AAGTGTTAAGAGGCAC----TG----TAGGTATCATTTTAGTTGATGCAAAAATGG----GAAAAAAA
i cebCap1.NW_016107322v1       C 0 I 24
s aotNan1.NW_018487195v1         4115685 56 -   9889416 AAGTGTTAAGAGGCAC----AG----TAGATATCATTTTAGTTGATGCAAGAATGG----AAAAAAAA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20743287 35 +  38779656 AAATGGGAAAAGACTT----TG----TA------------------ACAAGGAGAA----CGAAA---
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22685223 48 -  98207768 AGGTTATCATAGAC-------------AGATTCCATTTTAGCTGATGGAAG--TGG-----GAGAGAT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28779772 58 -  39895921 AAGTGATAAGAGGCACTCTTTA----TAGATATCATTTTAATTGATGCAGGCAAGA-----ATAACA-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6673478 59 +   6883506 AAGCGATAAAAGACAT----TGTTTATAGATATCATTTTAGCTGATGCAGGGAAGG----ACAAAAA-
i dasNov3.JH568778             I 1363 C 0
e micMur3.chr31                 30861208 110 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=24241.000000
s hg38.chr14_GL000009v2_random    163790 3 +    201709 ATA
s panTro5.chr9                  41854111 3 + 116767853 ATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815191 3 + 205426864 ATA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224676 3 +    245036 ATA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100872 3 -  86207423 AAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257562 3 - 204787373 ATA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156769 3 - 192460366 ATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176270 3 -  11645122 ATA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161533 3 -   6739814 ATA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51291 3 - 101219884 ATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173718 3 -    785044 ATA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62770 3 -  10971483 ATA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10919131 1 -  13128814 --A
i saiBol1.JH378168             C 0 C 0
s otoGar3.GL873528              20743322 3 +  38779656 GTA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22685271 2 -  98207768 -TA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28779830 3 -  39895921 ATA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6673537 2 +   6883506 -TA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30861208 110 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e aotNan1.NW_018487195v1         4115741 0 -   9889416 C
e cebCap1.NW_016107322v1         7647525 24 +  14377064 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=179531.000000
s hg38.chr14_GL000009v2_random    163793 19 +    201709 ACCAACTTTCACTGGTGA-A
s panTro5.chr9                  41854114 19 + 116767853 ACCAACTTTCACTGGTGA-A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815194 19 + 205426864 ACCAACTTTCACTGGTGA-A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224679 19 +    245036 ACCAATTTTCACTGGTGA-A
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100875 19 -  86207423 ACCAACTTCCACTGGTGA-A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257565 19 - 204787373 ACCAGCTTTCACTGGTGA-A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156772 19 - 192460366 ACCAGCTTTCACTGGTGA-A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176273 19 -  11645122 ACCAGCTTTCACTGGTGA-A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161536 19 -   6739814 ACCAGCTTTCAATGGTGA-A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51294 19 - 101219884 ACCAGCTTTCGCTGGTGA-A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173721 19 -    785044 ACCAGCTTTCACTGGTGA-A
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62773 19 -  10971483 ACCAGCTTTCACTGGTGA-A
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10919132 17 -  13128814 A--AACTTTCACTAGTTTT-
i saiBol1.JH378168             C 0 C 0
s aotNan1.NW_018487195v1         4115741 13 -   9889416 -----ATTTCACTAGTGT--
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30861318 19 -  47401472 ACCAACTTTCACTGGTGA-A
i micMur3.chr31                I 110 C 0
s otoGar3.GL873528              20743325 19 +  38779656 ACCAACTTTCACTGCTGA-A
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22685273 19 -  98207768 ACCAAGTTTTGCTGGTAA-T
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28779833 19 -  39895921 ACCAATTTTTACCAGATA-A
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6673539 19 +   6883506 ATCAGCTTTCTTTGGTGA-A
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e cebCap1.NW_016107322v1         7647525 24 +  14377064 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=496109.000000
s hg38.chr14_GL000009v2_random    163812 45 +    201709 CTTTGTCTTCAATCATTGTTTTCCTGTGGGTAAGTGGCTAATTTT
s panTro5.chr9                  41854133 45 + 116767853 CTTTGTCTTCAATCATTGTTTTCCCGTGGGTAAGTGGCTAATTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815213 45 + 205426864 CTTTGTCTTCAATCATTGTTTTCCTGAGGGTAAGTGGCTAATTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224698 45 +    245036 CTTTGTCTTCAATCATTGTTTTCCTGTGGGTAAGTGGCTAATTTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100894 44 -  86207423 CTTTGTCTTAAATTCTTGTTTTCCTGT-GGTAAGTGGCTAATTTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257584 42 - 204787373 CTTTATCTTCA---GTTGTTTTCCTGTAGATAAGTGGCTAATTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    156791 42 - 192460366 CTTTATCTTCA---GTTGTTTTCCTGTAGATAAGTGGCTAATTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176292 42 -  11645122 CTTTATCTTCA---GTTGTTTTCCTGTAGGTAAGTGGCTAATTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161555 42 -   6739814 CTTTATCTTCA---GTTGTTTTCCTGTAGGTAAGTGGCTAATTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51313 42 - 101219884 CTTTGTCTTCA---GGTGTTTTCCTGTAGGTAAGTGGCTAATTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          173740 45 -    785044 CTTTGTCTTCAGTTGTTGTTTTCCTGTAGGTAAGTGGCTAATTTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           62792 45 -  10971483 CTTTGTCTTCAGTTGTTGTTTTCCTGTAGGTAAGTGGCTAATTTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10919149 45 -  13128814 TTTTGTCTTCAATTATTGTTTTCCTGTGGGTAGGTGGCTAATTTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647549 45 +  14377064 TTTTGTCGTCAATTACTGTTTTCCTGTGGGTAAGTGGCTAATTTT
i cebCap1.NW_016107322v1       I 24 C 0
s aotNan1.NW_018487195v1         4115754 45 -   9889416 TTTTGTCTTCAATTATTGTTTTCCTGTGGGTAAGTGGCTAATTTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30861337 45 -  47401472 TTCTGTCTTCAATCCTTGCTTTTCTATGACTAAGTAGTTAATTTT
i micMur3.chr31                C 0 I 261
s otoGar3.GL873528              20743344 43 +  38779656 TTCTATCTTTAATGATTGCTTTCCTGTGAC--AATGGTTGATCTT
i otoGar3.GL873528             C 0 I 9
s mm10.chr16                    22685292 34 -  98207768 TTTTGTT-----------CTTTACACTGAGTAGACAGTTAAGTTC
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28779852 45 -  39895921 TTGTGTCCTCAGTGGTTGTTTTCCTGTGGGTAAGTGGTTAACCTC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6673558 45 +   6883506 TTCTGTCTGCAGTGGTTGTTTTCTTGTGGATAAGTGGTTAATTTT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=2334980.000000
s hg38.chr14_GL000009v2_random    163857 237 +    201709 CTGGCCTAGAGGTGGAATTGGTGTGTTGGTAACAATTGATT-TGATGA------TAACCTGCTTTTGTCTTTTTAAAAATTGTGAATCCAC---CATTGTTTCTGGTCCTGTTTTA-TACT-----TATGCAGTGTATAATCTCTCATGCAAAATTTAGTT------CTTT-----GTTTCTCAGCTTAAACTGGATTTTGATGAGCA--G--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTAGACAAAAAT---AACAA
s panTro5.chr9                  41854178 237 + 116767853 CTGGCCTAGAGGTGGAATTGGTGTGTTGGTAACAATTGATT-TGATGA------TAACCTGCTTTTGTCTTTTTAAAAATTGCTAATCCAC---CATTGTTTCTGGTCCTGTTTTA-TACT-----TATGCAGTGTATAATCTCTCATGCAAAATTTAGTT------CTTT-----GTTTCTCAGCTTAAACTGGATTTTGATGAGCA--G--TTTTCACCTTCACATGAAAGAAATGGCTTTGGTTGATGTTAGACAAAAAT---AACAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815258 233 + 205426864 CTGGCCTAGAGGTGGAATTGGTGTGTTGGTAACAATTGATT-TGATGA------TAACCTGCTTTTGTCTTTTTAAAAATTGCTAATCCAC---TATTGTCTCTGGTCCTGTTTTA-TACT-----TATGCGGTGTATAATTTCTCGTGCAAAATTTGG----------TT-----GTTTCTCAGCTTAAACTGGATTTTGATGAGCA--G--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTAGACAAAAAT---AACAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224743 237 +    245036 CTGGCCTGGAGGTGGGATTGGTGTGTTGGTAACAATTGATT-TGATGA------TAACCTGCTTTTGTCTTTTTAAAAATTGCTAATCCAC---CATTGTTTCTGGTTCTGTTTTA-TACT-----TACACAGTGTATAATCTCTCATGCAAAATTTAGTT------CTTT-----GTTTCTCAGCTTAAACTGGATTTTGATGAGCA--G--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTAGACAAAAAT---AACAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42100938 237 -  86207423 CTGGCCTAGAGGTGGAATTGGTGTGTTGGTAACAATTGATT-TGATGA------TAACCTGCGTTCACCTTTTTTAAAATGGCTAATCCAC---CATTGTTTCTGGTCCTGTTTTA-TACT-----TATGCAGTGTATAATCTCTCATGCAAAACTTAGTT------CTTT-----GTTTCTCAGCTGAAACTGGATTTTGATGAGCA--G--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTACACAAAAAT---AACAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257626 241 - 204787373 CTGGCGTAGAGGTGGAATTGGTGTGTTGGTAACAATTGATT-TGATGA------TAACGTGCTTTTGTCTTTTTAAAAATTGCTAATCCAC---CATTGTTTCTGGTCCTGTTTTA-TACT-----TATGCAGTGTATAACCTCTCATGTAAAATTTAGTTCT--TCCTTT-----GTTTCTCAGCTTAAACTGGCTTTTGATGAGCA--G--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTAGAGCAAAAT---AACAA
i rheMac8.chr2                 C 0 I 3
s macFas5.chr2                    156833 241 - 192460366 CTGGCGTAGAGGTGGAATTGGTGTGTTGGTAACAATTGATT-TGATGA------TAACGTGCTTTTGTCTTTTTAAAAATTGCTAATCCAC---CATTGTTTCTGGTCCTGTTTTA-TACT-----TATGCAGTGTATAACCTGTCATGTAAAATTTAGTTCT--TCCTTT-----GTTTCTCAGCTTAAACTGGCTTTTGATGAGCA--G--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTAGAGCAAAAT---AACAA
i macFas5.chr2                 C 0 I 3
s macNem1.NW_012010856v1          176334 238 -  11645122 CTGGCGTAGAGGTGGAATTGGTGTGTTGGTAACAATTGATT-TGATGA------TAATATGCTTTTGTCTTTTTAAAAATTGCTAATCCAC---CATTGTTTCTGGTCCTGTTTTA-TACT-----TATGCAGTGTATAACCTCTCATGTAAAATTTAGTTCT--TCCTTT-----GTTTCTCAGCTTAAACTGGCTTTTGATGAGCA--G--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTAGAGCAAAAT------AA
i macNem1.NW_012010856v1       C 0 I 3
s cerAty1.NW_012001605v1          161597 241 -   6739814 CTGGCGTAGAGGTGGAATTGGTGTGTTGGTAACAATTGATT-TGATGA------TAACGTGCTTTTGTCTTTTTAAAAATTACTAATCCAT---CATTGTTTCTGGTCCTGTTTTA-TACT-----TATGCAGTGTATAACCTCTCATGTAAAATTTAGTTCT--TCCTTT-----GTTTCTCAGCTTAAACAGGCTTTTGATGAGCA--G--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTACAGAAAAAT---AACAA
i cerAty1.NW_012001605v1       C 0 I 3
s chlSab2.chr22                    51355 241 - 101219884 CTGGCGTAGAGGTGGAATTGGTGTGTTGGTAACAATTGATT-TGATGA------TAACGTGCTTTTGTCTTTTTAAAAATTGCTGATCCAC---CATTGTTTCTGGTCCTGTTTTA-TACT-----TATGCAGTGTATAACCTCTCATGTAAAATTTAGTTCT--TCCTTT-----GTTTCTCAGCTTAAACTGGCTTTTGATGAGCA--G--TTTTCACCTTCAAATGAAAGAAATGGCTTTAGTTGATGTTACAGAAAAAT---AACAA
i chlSab2.chr22                C 0 I 3
s manLeu1.NW_012099043v1          173785 241 -    785044 CTAGCGTAGAGGTGGAATTGGTGTGTTGGTAACAATTGATT-TGATGA------TAACGTGCTTTTGTCTTTTTAAAAATTACTAATCCAT---CATTGTTTCTGGTCCTGTTTTA-TACT-----TATGCAGTGTATAACCTCTCATGTAAAATTTAGTTCT--TCCTTT-----GTTTCTCAGCTTAAACTGGATTTTGATGAGCA--G--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTAGAGAAAAAT---AACAA
i manLeu1.NW_012099043v1       C 0 I 3
s colAng1.NW_012123820v1           62837 241 -  10971483 CTGGCGTAGAGGTGGAATTGGTGTATTGGTAACAATTGATT-TGATGA------TAACGAGCTTTTGTCTTTTTAAAAATTGCTAATCCAC---CATTGTTTCTGGTCCTGTTTTA-TCCT-----TATGCAGTGTATAACCTCTCATGTAAAATTTAGTTCT--TCCTTT-----GTTTCTCAGCTTAAACTGGATTTTGATGAGCA--G--TTTTCACCTTCAAATGAAAGAAATGGCTTTGGTTGATGTTAAAGAAAAAT---AACAA
i colAng1.NW_012123820v1       C 0 I 1
s saiBol1.JH378168              10919194 240 -  13128814 CTGGTATAGAGGTGGAATTGGTGTGGTGGTAACAATTGATT-TGATGA------TAATCTGCTTTTGTCTTTTAAAAAAT-GCAAATTCAC---CATTGTTACTGGTCCTGTTTCA-TACA-----TATGCAGTGTATAAACTCTCATGCACAATTTAGTTCT--TCCTTT-----GTTTTCCAACATAAACTGTATTTTGATGAGCA--G--TTTTCACCTTCAAATAAAAGAAATGGCTTTGGTTGATAGTAGACAAAAAT---AACAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647594 243 +  14377064 CTGGTATAGAGATGGAATTGGTGTGGTGGTAACAATTGATT-TGATTA------TAATCTGCTTTTGTCTTTTAAAAAAT-GCAAATCCAC---CGTTGTTTCCTGTCCTGTTTCA-TACA-----TATGCAGTGTATAAACTCTCATGCACAATTTAGATCT--TCCTTT-----GTTTCCCAACATAAACTGTATTTTGATGAGCA--G--TTTTCACCTTCAAGTAAAAGAAATGGCTTTGGTTGATAGTAGACAAAAATAACAACAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4115799 243 -   9889416 CTGGTATAGAGGTGGAATTGGTGTGGTGGTAACAATTGATT-TGATGA------TAATCTGCTTTTGTCTTTTAAAAAAT-GCAAATCCAC---CATTGTTTCTGGTCCTGTTTCA-TACA-----TATGCAGTGTATAAACTCTCATGCACAATTTAGTTCT--TCCTTT-----GTTTCCCAACATAAACTGTATTTTGATGAGCA--G--TTTTCACCTTCAAATAAAAGAAATGGCTTTGGTTGATAGTAGACAAAAATAACAACAA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20743396 246 +  38779656 ATGATAAAGAAGTTGAATTGATATGGTGGTAATGATTGATTCTGAAGA------TATTTAG--TTTGTCTTTTGTAAAAT-ACTAACTCAC---CTTTGTATTTGGTCCTGCTGTA-TAATATAGCTACATCGTATATAATCTCTCGCACACAGTTGAGTTTT--AGCATT-----GTTTCCCAACTTAAATTAGGTTTTAATCAGTAATG--TTTTCACTCTCCAATGAAAGAAACAGTTTTGGTTGATATGAGGCAGAAAT---AATGA
i otoGar3.GL873528             I 9 C 0
s mm10.chr16                    22685326 208 -  98207768 ----------------------ATATTAGAAACGATTGCTA-TTCTAA------T-------TTTATCCTTTTTAAAAAACTGTGAACTACATTCATTTTTACTGGTC----TTCC-TACC-----TATGCAATGTATTCGCTGTCATATATTACTTTGCTCC--TCTTTTTAAAAAATATCTGCCTTAAGTTTGATTTTGGTGATCA--GAATTCTCACTTTTCTATGAAGAA--------TGTTTG--GACAAAAAAAAAT---GACGG
i mm10.chr16                   C 0 I 4
s canFam3.chr31                 28779897 243 -  39895921 ATGGTATAGAAAGAGAATTGGTGTGGTGGTAAGGCATGATT-CTGTTAATATTCTAGTTTGTCTTTTTTTTTTTTTTTAT-GTTGATTCCC---CTTTTTAC---GTCCTGC-----AACC-----TCTACCTTGTATAATCTCTCCTATACAATTTGATTCTGGCTTTTT-----GTTTCCTGGCATAAATTGGATTTTTATGGACAACA--CTCTTACTTTTGAATGAAAGAAAGGGTTTCGGTTGACCTTAGACAGAAAT---AACAA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6673603 243 +   6883506 ATGGTGTAGAGATGGAATTGGT-CAAGGGTATTGATTGGTT-C--TGA------TACTTCTGttttttactttttttcttttttttttttt---AATGCTTACTCATCTGGTTTTGCTACC-----CATACAGCACATACTCTCTCTCATACAACTTGTTCCTGGTTGGTT-----GTTTCCTGTCTTAAACTGGCTTTCGGTGGGTAATA--TTCTCACTTATAATTGAAAGTCATGATTTTAGTTGACATTAGACTGAAAT---AACTA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30861382 261 -  47401472 I
e nasLar1.chr2                    135826 13542 + 181502896 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=19695.000000
s hg38.chr14_GL000009v2_random    164094 2 +    201709 GA
s panTro5.chr9                  41854415 2 + 116767853 GA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815491 2 + 205426864 GA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224980 2 +    245036 GA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42101175 2 -  86207423 GA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257870 2 - 204787373 GA
i rheMac8.chr2                 I 3 C 0
s macFas5.chr2                    157077 2 - 192460366 GA
i macFas5.chr2                 I 3 C 0
s macNem1.NW_012010856v1          176575 2 -  11645122 GA
i macNem1.NW_012010856v1       I 3 C 0
s cerAty1.NW_012001605v1          161841 2 -   6739814 GA
i cerAty1.NW_012001605v1       I 3 C 0
s chlSab2.chr22                    51599 2 - 101219884 GA
i chlSab2.chr22                I 3 C 0
s manLeu1.NW_012099043v1          174029 2 -    785044 GA
i manLeu1.NW_012099043v1       I 3 C 0
s nasLar1.chrUn_JMHX01317676v1       950 2 +      2209 AA
i nasLar1.chrUn_JMHX01317676v1 n 13542 I 181
s colAng1.NW_012123820v1           63079 2 -  10971483 AA
i colAng1.NW_012123820v1       I 1 I 3
s saiBol1.JH378168              10919434 2 -  13128814 AA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647837 2 +  14377064 AA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116042 2 -   9889416 AA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20743642 2 +  38779656 GA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22685538 2 -  98207768 GA
i mm10.chr16                   I 4 C 0
s canFam3.chr31                 28780140 2 -  39895921 CA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6673846 2 +   6883506 CA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30861382 261 -  47401472 I
e eulFla1.LGHW01000695v1           67201 1938 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=6747.000000
s hg38.chr14_GL000009v2_random    164096 1 +    201709 A
s panTro5.chr9                  41854417 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815493 1 + 205426864 G
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224982 1 +    245036 G
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42101177 1 -  86207423 G
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257872 1 - 204787373 G
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157079 1 - 192460366 G
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176577 1 -  11645122 G
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161843 1 -   6739814 G
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51601 1 - 101219884 G
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174031 1 -    785044 G
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10919436 1 -  13128814 G
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647839 1 +  14377064 G
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116044 1 -   9889416 G
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           69139 1 +   1229009 A
i eulFla1.LGHW01000695v1       I 1938 C 0
s otoGar3.GL873528              20743644 1 +  38779656 A
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22685540 1 -  98207768 G
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28780142 1 -  39895921 A
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6673848 1 +   6883506 A
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30861382 261 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1       952 181 +      2209 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e colAng1.NW_012123820v1           63081 3 -  10971483 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=-6250.000000
s hg38.chr14_GL000009v2_random    164097 3 +    201709 GGA
s panTro5.chr9                  41854418 3 + 116767853 GGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815494 3 + 205426864 GGA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224983 3 +    245036 GGA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42101178 3 -  86207423 GGA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257873 3 - 204787373 GCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157080 3 - 192460366 GCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176578 3 -  11645122 GCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161844 3 -   6739814 GCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51602 3 - 101219884 GCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174032 3 -    785044 GCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63084 3 -  10971483 GCT
i colAng1.NW_012123820v1       I 3 C 0
s saiBol1.JH378168              10919437 3 -  13128814 TGA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647840 3 +  14377064 TGA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116045 3 -   9889416 TGA
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           69140 3 +   1229009 AGA
i eulFla1.LGHW01000695v1       C 0 I 171
s otoGar3.GL873528              20743645 3 +  38779656 AGT
i otoGar3.GL873528             C 0 I 5
s mm10.chr16                    22685541 3 -  98207768 AAA
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28780143 3 -  39895921 AGA
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6673849 3 +   6883506 AGA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30861382 261 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1       952 181 +      2209 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=-7053.000000
s hg38.chr14_GL000009v2_random    164100 2 +    201709 -AT
s panTro5.chr9                  41854421 2 + 116767853 -AT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815497 2 + 205426864 -AT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224986 2 +    245036 -AT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42101181 2 -  86207423 -AT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257876 2 - 204787373 -AT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157083 2 - 192460366 -AT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176581 2 -  11645122 -AT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161847 2 -   6739814 -AT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51605 2 - 101219884 -AT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174035 2 -    785044 -AT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63087 2 -  10971483 -AT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10919440 2 -  13128814 -AT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647843 2 +  14377064 -AT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116048 2 -   9889416 -AT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20743653 1 +  38779656 -A-
i otoGar3.GL873528             I 5 C 0
s mm10.chr16                    22685545 1 -  98207768 -G-
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 28780147 1 -  39895921 -G-
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6673852 2 +   6883506 GG-
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30861382 261 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1       952 181 +      2209 I
e eulFla1.LGHW01000695v1           69143 171 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=365586.000000
s hg38.chr14_GL000009v2_random    164102 32 +    201709 TAAAGAAATATGTTTGTCATCTTG-TAACATTA
s panTro5.chr9                  41854423 32 + 116767853 TAAAGAAATATGTTTGTCATCTTG-TAACATTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815499 32 + 205426864 TAAAGAAATATATTTGTCATCTTG-TAACATTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          224988 28 +    245036 T----AAATATGTTTGTCATCTTG-TAACATTA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42101183 32 -  86207423 TAAAGAAATACGTTTGTCACCTTG-TGACATCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204257878 32 - 204787373 TAAAGAAATAAGTTTGTCATCTTG-TAACATTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157085 32 - 192460366 TAAAGAAATAAGTTTGTCATCTTG-TAACATTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176583 32 -  11645122 TAAAGAAATAAGTTTGTCATCTTG-TAACATTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161849 32 -   6739814 TAAAGAAATAAGTTTGTCATCTTG-TAACATTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51607 32 - 101219884 TAAAGAAATAAGTTTGTCATCTTG-TAACATTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174037 32 -    785044 TAAAGAAATAAGTTTGTCATCTTG-TAACATTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63089 32 -  10971483 TAAAGAAATAAGTTTGTCATCTTG-TAACATTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10919442 32 -  13128814 TAAAGACATATGTTTGTCATCTTG-TAATAGTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647845 32 +  14377064 TAAAGAAATATGTTTGTCATCTTG-TAATATTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116050 28 -   9889416 TAAAGAAATA----TGTCATCTTA-TAATATTA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30861643 32 -  47401472 TAAGGAAATATGTTTGTCATCTTC-TAACATTA
i micMur3.chr31                I 261 I 91
s otoGar3.GL873528              20743654 32 +  38779656 TAAGGAAATATGTTTGTTATCTTC-TACTGTTA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22685546 32 -  98207768 CATGGCAAAATATCTGCCATCTTG-TAGCAAGC
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28780148 33 -  39895921 AAAATAAGGAGATCTGTCATCTTATTATCATTA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6673854 32 +   6883506 AAAATAAGAGCATTTGATATCTTA-TAGCGTTA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01317676v1       952 181 +      2209 I
e eulFla1.LGHW01000695v1           69143 171 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=399996.000000
s hg38.chr14_GL000009v2_random    164134 37 +    201709 AATAAATGAA-AC--TGAAAATTCAACAATTCTGCTTCAT
s panTro5.chr9                  41854455 37 + 116767853 AATAAATGAA-AC--TGAAAATTCAACAATTCTGCTTCAT
i panTro5.chr9                 C 0 I 1
s panPan2.chr3                  77815531 39 + 205426864 CATAAATGAA-ACTTTGAAAATTCAACAATTCTGCTTCAT
i panPan2.chr3                 C 0 I 1
s gorGor5.CYUI01000160v1          225016 39 +    245036 CATAAATGAA-ACTTTGAAAATTCAACAATTCTGCTTCAT
i gorGor5.CYUI01000160v1       C 0 I 1
s nomLeu3.chr21                 42101215 39 -  86207423 CATAAATGAA-ACTTTGAAAATTCAACAATTCTGCTTTAC
i nomLeu3.chr21                C 0 I 1
s rheMac8.chr2                 204257910 39 - 204787373 CATAAATAAA-ACTTTGAAAATTCAACAATTCTGTTTTAT
i rheMac8.chr2                 C 0 I 1
s macFas5.chr2                    157117 39 - 192460366 CATAAATAAA-ACTTTGAAAATTCAACAATTCTGTTTTAT
i macFas5.chr2                 C 0 I 1
s macNem1.NW_012010856v1          176615 39 -  11645122 CATAAATAAA-ACTTTGAAAATTCAACAATTCTATTTTAT
i macNem1.NW_012010856v1       C 0 I 1
s cerAty1.NW_012001605v1          161881 39 -   6739814 CATAAATTAA-ACTCTGAAAATTCAACAATTCTGTTTTAT
i cerAty1.NW_012001605v1       C 0 I 1
s chlSab2.chr22                    51639 39 - 101219884 CATAAATAAA-ACTCTGAAAATTCAACAATTCTGTTTTAT
i chlSab2.chr22                C 0 I 1
s manLeu1.NW_012099043v1          174069 39 -    785044 CATAAATAAA-ACTTTGAAAATTCAACAATTCTGTTTTAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63121 39 -  10971483 CATAAATAAA-ACTTTGAAAATTCAACAATTCTGTTTTAT
i colAng1.NW_012123820v1       C 0 I 1
s saiBol1.JH378168              10919474 39 -  13128814 TATAAATGAG-GCTTTGAAAATTCAATAATTCTGTTTTAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647877 39 +  14377064 CATAAATGAA-GCTTTGAAAATTCAGCAATTCTGTTTTAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116078 39 -   9889416 CATAAATGAA-GCTTTGAAAGTTCAACAATTCTGTTTTAT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20743686 39 +  38779656 TCTTAATGAA-ACTTAGAAAATTCGACTACTCACTCTTAC
i otoGar3.GL873528             C 0 I 3
s mm10.chr16                    22685578 40 -  98207768 TGTATATTCATGCTTTGAACATTTAAAAATTATCTTTTCC
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28780181 37 -  39895921 TATTGATGAA-ACATTTAAAATTCAACAATCCTCTTCT--
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6673886 39 +   6883506 TATTAATGAA-ATATTGAAAATTCAACTCTCCTCTTTTCT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30861675 91 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1       952 181 +      2209 I
e eulFla1.LGHW01000695v1           69143 171 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=552371.000000
s hg38.chr14_GL000009v2_random    164171 50 +    201709 AAAAAATAGAAAGTTTCTACTGTTTTTCATTATTTTCAAAGCTATATCAT
s panTro5.chr9                  41854493 50 + 116767853 AAAAAATGGAAAGTTTCTACTGTTTTTCATTATTTTCGAAGCTATATCAT
i panTro5.chr9                 I 1 C 0
s panPan2.chr3                  77815571 50 + 205426864 AAAAAATAGAAAGTTTCTACTGTTTTTCATTATTTTCAAAGCTATATCAT
i panPan2.chr3                 I 1 C 0
s gorGor5.CYUI01000160v1          225056 50 +    245036 AAAAAATACAAAGTTTCTACTGTTTTTCATTATTTTCAAAGCTATATCAT
i gorGor5.CYUI01000160v1       I 1 C 0
s nomLeu3.chr21                 42101255 46 -  86207423 AAAAAATAGAAAGTTTCTACTGTTT----TTATTTTCAAAGCTATATCAT
i nomLeu3.chr21                I 1 C 0
s rheMac8.chr2                 204257950 50 - 204787373 ACAAAATAGAAAGTTTCTACTGTTTTTCATTATTTTCAAAGCTATATCAT
i rheMac8.chr2                 I 1 C 0
s macFas5.chr2                    157157 50 - 192460366 ACAAAATAGAAAGTTTCTACTGTTTTTCATTATTTTCAAAGCTATATCAT
i macFas5.chr2                 I 1 C 0
s macNem1.NW_012010856v1          176655 50 -  11645122 ACAAAATAGAAAGTTTCTACTGTTTTTCATTATTTTCAAAGCTATATCAT
i macNem1.NW_012010856v1       I 1 C 0
s cerAty1.NW_012001605v1          161921 50 -   6739814 AAAAAATAGAAAGTTTCTACTGTTTTTCATTATTTTCAAAGCTATATCAT
i cerAty1.NW_012001605v1       I 1 C 0
s chlSab2.chr22                    51679 50 - 101219884 AAAAAATAGAAAGTTTCTACTGTTTTTCATTATTTTCAAAGCTATATCAT
i chlSab2.chr22                I 1 C 0
s manLeu1.NW_012099043v1          174108 50 -    785044 AAAAAATAGAAAGTTTCTACCGTTTTTCATTATTTTCAAAGCTATATCAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63161 50 -  10971483 AAAAAATAGAAAGTTTCTACTGTTTTTCATTATTTTCAAAGCTATATCAT
i colAng1.NW_012123820v1       I 1 C 0
s saiBol1.JH378168              10919513 48 -  13128814 --AAAATAGAAAGTTTTGACTGTTTTTCGTTATTTTCAAAGCTATATCAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647916 48 +  14377064 --AAAATAGCAAGTTTTGACTGTTTTTCATTATTTTCAAAGCTATATCAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116117 48 -   9889416 --AAAAGAGAAAGTTTTGACTGTTTTTCGTTATTTTCAGAGCTATATCAT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20743728 50 +  38779656 AAGAAAGAGAACAGTGATATTGTTTCTCATAATTTTCAAAGCCATGTTGG
i otoGar3.GL873528             I 3 C 0
s mm10.chr16                    22685618 49 -  98207768 -AAAAGTTAGGCAATTCTATTATTTCTCTGTAATCATAAGGCCACAGAGC
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28780218 47 -  39895921 AAAAAGTAGAAAGTTT---CTGTTTCTCATTATCTTCAAAACAATATCAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6673925 46 +   6883506 AAGAAATAGAA--TTTCTACTGTTT--CATTATCTTCAAAGTCATATCAT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30861675 91 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1       952 181 +      2209 I
e eulFla1.LGHW01000695v1           69143 171 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=499608.000000
s hg38.chr14_GL000009v2_random    164221 41 +    201709 TAAATGAAATTTCTGCCTCATGGAAGG-TTTTTAGAACTATG
s panTro5.chr9                  41854543 41 + 116767853 TAAATGAAATTTCTGCCTCATAGAAGG-TTTTTAGAACTATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815621 41 + 205426864 TAAATGACATTTCTGCCTCATAGAAGA-TTTTTAGAACTATG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          225106 42 +    245036 TAAATGAAATTTCTGCCTCGTGGAAGATTTTTTAGAACTATG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42101301 41 -  86207423 TAAATGAAATTTCTGCCTCATGGAAGA-TTTTTAGAACTACA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258000 41 - 204787373 TAAGTGAAATTTCTGCCTCATGGAAGA-TTTTTAGAACTATG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157207 41 - 192460366 TAAGTGAAATTTCTGCCTCATGGAAGA-TTTTTAGAACTATG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176705 41 -  11645122 TAAGTGAAATTTCTGCCTCATGGAAGA-TTTTTAGAACTATG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          161971 41 -   6739814 TAAGTGAAATTTCTGCCTCATGGAAGA-TTTTTAGAACTATG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51729 41 - 101219884 TAAGTGAAATTTCTGCCTCATGGAAGA-TTTTTAGAACTATG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174158 41 -    785044 TAAATGAAATTTCTGCCTCATGGAAGA-TTTTTAGAACTATG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63211 41 -  10971483 TAACTGAAATTTCTGCCTCATAGAAGA-TTTTTAGAACTATG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10919561 41 -  13128814 TAAACGAAATTTCTGCCTCATCGGTGa-tttttagaataata
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7647964 41 +  14377064 TAAATGAAATTTCTGCCTTGTGGAAGA-TTTTTAGAATAATA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116165 41 -   9889416 TAAATGAAATTTCTGCCCCATGGAAGA-TTTTTAGAATAATG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30861766 41 -  47401472 TAAATGAAATTTCTGCCTTATGAAGGA-TTTCTAGAATTATG
i micMur3.chr31                I 91 C 0
s otoGar3.GL873528              20743778 39 +  38779656 TAAATGAAATTTAAGAC--GTGATAGA-TTACTGGGATTGTG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22685667 40 -  98207768 TAGATGGTA-ATCTGCCTGTTGAAGGA-CTTCCAGAAGAATA
i mm10.chr16                   C 0 I 2
s canFam3.chr31                 28780265 41 -  39895921 TAAATATAATTTCTGCCTCATGAAGGA-TTTCCAGAAATATG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6673971 41 +   6883506 TAAATGTAATTTCTGCAATATGAAGGA-TTTCCAGAAGTATA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01317676v1       952 181 +      2209 I
e eulFla1.LGHW01000695v1           69143 171 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=28724.000000
s hg38.chr14_GL000009v2_random    164262 4 +    201709 TAA----T
s panTro5.chr9                  41854584 4 + 116767853 TAA----T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815662 4 + 205426864 TAA----T
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          225148 4 +    245036 TAA----T
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42101342 4 -  86207423 TAA----C
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258041 4 - 204787373 TAA----T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157248 4 - 192460366 TAA----T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176746 4 -  11645122 TAA----T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162012 8 -   6739814 TAATACTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51770 8 - 101219884 TAATACTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174199 8 -    785044 TAATACTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63252 4 -  10971483 TAA----T
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10919602 4 -  13128814 taa----t
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648005 4 +  14377064 TAG----T
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116206 4 -   9889416 TAA----T
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30861807 4 -  47401472 CAA----T
i micMur3.chr31                C 0 I 4
s eulFla1.LGHW01000695v1           69314 4 +   1229009 CAA----T
i eulFla1.LGHW01000695v1       I 171 I 1947
s otoGar3.GL873528              20743817 4 +  38779656 CAA----T
i otoGar3.GL873528             C 0 I 4
s mm10.chr16                    22685709 4 -  98207768 CAA----C
i mm10.chr16                   I 2 I 3
s canFam3.chr31                 28780306 4 -  39895921 CAA----A
i canFam3.chr31                C 0 I 3
s dasNov3.JH568778               6674012 4 +   6883506 TAA----T
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01317676v1       952 181 +      2209 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=13923.000000
s hg38.chr14_GL000009v2_random    164266 1 +    201709 A
s panTro5.chr9                  41854588 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815666 1 + 205426864 A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          225152 1 +    245036 A
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42101346 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258045 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157252 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176750 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162020 1 -   6739814 A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51778 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174207 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63256 1 -  10971483 A
i colAng1.NW_012123820v1       C 0 I 4
s saiBol1.JH378168              10919606 1 -  13128814 a
i saiBol1.JH378168             C 0 I 4
s cebCap1.NW_016107322v1         7648009 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 I 4
s aotNan1.NW_018487195v1         4116210 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 I 4
s micMur3.chr31                 30861815 1 -  47401472 A
i micMur3.chr31                I 4 C 0
s canFam3.chr31                 28780313 1 -  39895921 A
i canFam3.chr31                I 3 C 0
s dasNov3.JH568778               6674016 1 +   6883506 A
i dasNov3.JH568778             C 0 I 4
e mm10.chr16                    22685713 3 -  98207768 I
e nasLar1.chrUn_JMHX01317676v1       952 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e otoGar3.GL873528              20743821 4 +  38779656 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=35817.000000
s hg38.chr14_GL000009v2_random    164267 3 +    201709 ATA
s panTro5.chr9                  41854589 3 + 116767853 ATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815667 1 + 205426864 A--
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          225153 3 +    245036 ATA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42101347 3 -  86207423 ATA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258046 3 - 204787373 ATA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157253 3 - 192460366 ATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176751 3 -  11645122 ATA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162021 3 -   6739814 ATA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51779 3 - 101219884 ATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174208 3 -    785044 ATA
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chrUn_JMHX01317676v1      1133 3 +      2209 ATA
i nasLar1.chrUn_JMHX01317676v1 I 181 n 181
s colAng1.NW_012123820v1           63261 3 -  10971483 ACA
i colAng1.NW_012123820v1       I 4 C 0
s saiBol1.JH378168              10919611 3 -  13128814 ata
i saiBol1.JH378168             I 4 C 0
s cebCap1.NW_016107322v1         7648014 3 +  14377064 ATA
i cebCap1.NW_016107322v1       I 4 C 0
s aotNan1.NW_018487195v1         4116215 3 -   9889416 ATA
i aotNan1.NW_018487195v1       I 4 C 0
s micMur3.chr31                 30861816 3 -  47401472 ATA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20743825 2 +  38779656 -AA
i otoGar3.GL873528             I 4 C 0
s mm10.chr16                    22685716 3 -  98207768 ATA
i mm10.chr16                   I 3 C 0
s canFam3.chr31                 28780314 3 -  39895921 ATA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6674021 3 +   6883506 ATA
i dasNov3.JH568778             I 4 C 0
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=8858026.000000
s hg38.chr14_GL000009v2_random    164270 662 +    201709  
s panTro5.chr9                  41854592 662 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77815668 660 + 205426864  
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          225156 662 +    245036  
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42101350 658 -  86207423  
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258049 662 - 204787373  
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157256 662 - 192460366  
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          176754 662 -  11645122  
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162024 662 -   6739814  
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    51782 662 - 101219884  
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174211 662 -    785044  
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63264 662 -  10971483  
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10919614 661 -  13128814  
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648017 631 +  14377064  
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116218 660 -   9889416  
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30861819 668 -  47401472  
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20743827 664 +  38779656  
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22685719 611 -  98207768  
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28780317 674 -  39895921  
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6674024 671 +   6883506  
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           61235 7611 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=5907.000000
s hg38.chr14_GL000009v2_random    164932 1 +    201709 C
s panTro5.chr9                  41855254 1 + 116767853 C
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816328 1 + 205426864 C
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          225818 1 +    245036 C
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102008 1 -  86207423 C
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258711 1 - 204787373 T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157918 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177416 1 -  11645122 T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162686 1 -   6739814 T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52444 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174873 1 -    785044 T
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63926 1 -  10971483 C
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920275 1 -  13128814 C
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648648 1 +  14377064 C
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116878 1 -   9889416 C
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30862487 1 -  47401472 C
i micMur3.chr31                C 0 I 2
s eulMac1.LGHX01000692v1           68846 1 +   1212331 T
i eulMac1.LGHX01000692v1       I 7611 I 7998
s otoGar3.GL873528              20744491 1 +  38779656 C
i otoGar3.GL873528             C 0 I 2
s canFam3.chr31                 28780991 1 -  39895921 C
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22686330 1 -  98207768 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e dasNov3.JH568778               6674695 0 +   6883506 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=3783.000000
s hg38.chr14_GL000009v2_random    164933 5 +    201709 A----TTTT
s panTro5.chr9                  41855255 6 + 116767853 A---TTTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816329 6 + 205426864 A---TTTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          225819 6 +    245036 A---TTTTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102009 6 -  86207423 A---TTTTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258712 5 - 204787373 A----TTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157919 5 - 192460366 A----TTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177417 5 -  11645122 A----TTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162687 5 -   6739814 A----TTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52445 5 - 101219884 A----TTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174874 5 -    785044 A----TTTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63927 5 -  10971483 A----TTTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920276 9 -  13128814 AATTCTTTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648649 9 +  14377064 AATTCTTTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116879 9 -   9889416 AATTCTTTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30862490 5 -  47401472 ----TGTTT
i micMur3.chr31                I 2 C 0
s otoGar3.GL873528              20744494 5 +  38779656 ----GTTTT
i otoGar3.GL873528             I 2 C 0
s mm10.chr16                    22686331 5 -  98207768 ----GTTTT
i mm10.chr16                   I 1 I 2050
s canFam3.chr31                 28780992 5 -  39895921 --AACTT--
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6674695 5 +   6883506 ----GTTTT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=286383.000000
s hg38.chr14_GL000009v2_random    164938 28 +    201709 TCCTCATACTATGATGGC--TATAATTTTT
s panTro5.chr9                  41855261 28 + 116767853 TCCTCATACTATGATGGC--TATAATTTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816335 28 + 205426864 TCCTCATACTATGATGGC--TATAATTTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          225825 28 +    245036 TCCTCATACTATGATGGC--TATAATTTTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102015 28 -  86207423 TCCTCATACTATGATGGC--TATAATTTTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258717 28 - 204787373 TCCTCATAATATGATGGC--TATAATTTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157924 28 - 192460366 TCCTCATAATATGATGGC--TATAATTTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177422 28 -  11645122 TCCTCATAATATGATGGC--TATAATTTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162692 28 -   6739814 TCCTCATAATATGATGGC--TATAATTTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52450 28 - 101219884 TCCTCATAATATGATGGC--TATAATTTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174879 28 -    785044 TCCTCATAATATGGTGGC--TATAATTTTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63932 28 -  10971483 CCCTCATAATATGATCGC--TATAATTTTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920285 28 -  13128814 TCCTCATACTGTGATGGT--TATAATTTTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648658 28 +  14377064 TCCTCATACTGTGTTGGT--TGTAATTTTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116888 28 -   9889416 TCCTCATACTCTGATGGT--TATACTTTTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30862495 30 -  47401472 TCCTCATACTGTCATGGCTATATGATTTTT
i micMur3.chr31                C 0 I 1
s otoGar3.GL873528              20744499 30 +  38779656 TTCTCATACTGTTATGTCattattattatt
i otoGar3.GL873528             C 0 I 307
s canFam3.chr31                 28780997  4 -  39895921 --------------------------TTTC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6674700 30 +   6883506 CCCTCATACTATGATGGATATATGATTTTT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22686336 2050 -  98207768 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=3560.000000
s hg38.chr14_GL000009v2_random    164966 1 +    201709 -T
s panTro5.chr9                  41855289 1 + 116767853 -T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816363 1 + 205426864 -T
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          225853 1 +    245036 -T
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102043 1 -  86207423 -T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258745 1 - 204787373 -T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157952 1 - 192460366 -T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177450 1 -  11645122 -T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162720 1 -   6739814 -T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52478 1 - 101219884 -T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174907 1 -    785044 -T
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63960 1 -  10971483 -T
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920313 1 -  13128814 -T
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648686 1 +  14377064 -T
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116916 1 -   9889416 -T
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28781001 1 -  39895921 -T
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6674730 1 +   6883506 A-
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22686336 2050 -  98207768 I
e micMur3.chr31                 30862525 1 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20744529 307 +  38779656 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=647875.000000
s hg38.chr14_GL000009v2_random    164967 54 +    201709 AAAACAGTAGAAATGTTTAATTTTTAAAGGCTA-CTAGTGTCTATTTCATTCAAA
s panTro5.chr9                  41855290 54 + 116767853 AAAACAGTAGAAATGTTTAATTTTTAAAGGCTA-CTAGTGTCTATTTAGTTCAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816364 54 + 205426864 AAAACAGTAGAAATGTTTAATTTTTAAAGGCTG-CTAGTGTCTATTTTATTGAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          225854 54 +    245036 AAAACAGTAGAAATGTTTAATTTTTAAAGGCTG-CTAGTGTCTGTTTTATTCAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102044 54 -  86207423 AAAACAGTAGAAATGTTTAATTTTTGAAGGCCG-CTAGTGTCTATTTTATGCAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258746 54 - 204787373 AAAACAGTAGAAATGTTTAATTTTTAAAAGCTG-CTAGTGTCTATTTTATTCAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    157953 54 - 192460366 AAAACAGTAGAAATGTTTAATTTTTAAAAGCTG-CTAGTGTCTATTTTATTCAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177451 54 -  11645122 AAAACAGTAGAAATGTTTAATTTTTAAAAGCTG-CTAGTGTCTATTTTATTCAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162721 54 -   6739814 AAAACAGTAGAAATGTTTAATTTTTAAAAGCTG-CTAGTGTCTATTTTATTCAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52479 54 - 101219884 AAAACAGTAGAAATGTTTAATTTTTAAAAGCTG-CTAGTGTCTATTTTATTCAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174908 54 -    785044 AAAATAGTAGAAATGTTTAATTTTTAAAAGCTG-CTAGTGTCTATTTTATTCAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           63961 54 -  10971483 AAAACAGTAGAAATGTTTAATTTTTAAAAGCTG-CTAGTGTCTATTTTATTCAAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920314 54 -  13128814 AAAACAGTAGAAATGTTAAATTTTTAAAGGCTG-CTCGTGTCTATTTTATTCAAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648687 52 +  14377064 AAAACAGTAGAAATGTTAAA--TTTAAAGGCTG-CTAGTATCTATTTTATTCAAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116917 54 -   9889416 AAAACAGTAGAAATGTTAAATTTTTAAAGGCTG-CTAGTGTCTATTTAATTCAAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30862526 54 -  47401472 AGAACAATCAAAATGTTTAATTTTTAAAGGCTT-CTAGTGTCTCTTTTATTCAAA
i micMur3.chr31                I 1 I 896
s otoGar3.GL873528              20744836 49 +  38779656 AGAGCAATCAAAATGTTTAAAAATTAAAGGCTA-CTACTATC-----TATTCAAA
i otoGar3.GL873528             I 307 C 0
s canFam3.chr31                 28781002 55 -  39895921 GAAACAGTGAACATGTTTAATTTTTAAAGGCCATCTTGTGTCTGTTTTATTCAAA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6674731 41 +   6883506 AAAATTGTGAATATGTTTAATTTTTAAAGGCTG-CTAAT-------------AAA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22686336 2050 -  98207768 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=1100322.000000
s hg38.chr14_GL000009v2_random    165021 124 +    201709 GATATGAGCTCTTCAGTTCAACTTGTTGTTTGAAATTTGAACAGCTTTTTCTTGCTCTTGTTCAATACAGTTATTTAACAGTCCAGGC------------------------------------------------------------------------AGGCCTCCGGAGTTA---CATATAT---------------G------TATGTGGC--TATGT
s panTro5.chr9                  41855344 124 + 116767853 GATGTGAGCTCTTCAGTTCAACTTTTTGTTTGAAATTTGAACAGCTTTTTCTTGCTCTTGTTCAATACAGTTATTAAAGAGTCTAGGC------------------------------------------------------------------------AGGCCTCCGGAGTTA---CATATAT---------------G------TATGTGGC--TATGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816418 124 + 205426864 GATGTGAGCTCTTCAGTTCAACTTGTTGTTTGAAATTTGAACAGCTTTTTCTTGCTCTTGTTCAATACAGTTATTAAACAGTCCAGGC------------------------------------------------------------------------AGGCCTCCGGAGTTA---CATATAT---------------G------CATGTGGC--TCTAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          225908 124 +    245036 GATGTGAGCTCTTCAGTTCAACTTGTTGTTTGAAATTTGAACAGCTTTTTCTTGCTCTTGTTCAATACAGTTATTAAACAGTCCAGGC------------------------------------------------------------------------AGGCCTCCGGAGTTA---CATATAT---------------G------CATGTGGC--TCTAT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102098 124 -  86207423 GATGTGAGCTCCCCAGTTCAACCTGTTGTTTGAAATTTGACCAGCTTTTTCTTGCTCTTGTTCAGGACAGTTATTAAACAGTCCAGAC------------------------------------------------------------------------AGGCCTCCGGAGTTA---CATATAT---------------G------TATGTGGC--TCTGT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258800 123 - 204787373 GTTGTGAACTCTTCAGTTCAACTTGTTGTTTTAAATTTGAGCAGC-TTTTCTTGCTCTTGTTCAGTACATTTATTAAACAGTCCAGGC------------------------------------------------------------------------AGGCCTCCAGAGTTA---CATATAT---------------G------TATGTGGC--TATGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158007 123 - 192460366 GTTGTGAACTCTTCAGTTCAACTTGTTGTTTTAAATTTGAGCAGC-TTTTCTTGCTCTTGTTCAGTACATTTATTAAACAGTCCAGGC------------------------------------------------------------------------AGGCCTCCAGAGTTA---CATATAT---------------G------TATGTGGC--TATGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177505 123 -  11645122 GTTGTGAACTCTTCAGTTCAACTTGTTGTTTGAAATTTGAGCAGC-TTTTCTTGCTCTTGTTCAGTACATTTATTAAACAGTCCAGGC------------------------------------------------------------------------AGGCCTCCAGAGTTA---CATATAT---------------G------TATGTGGC--TATGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162775 123 -   6739814 GTTGTGAACTCTTCAGTTCAACTTGTTGTTTGAAATTTGAGCAGC-TTTTCTTGCTCTTGTTCAGTACATTTATTAAACAGTCCAGGC------------------------------------------------------------------------AGCCCTCCAGAGTTA---Catatat---------------g------tatgtggc--tatgt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52533 120 - 101219884 GTTGTGAACTCTTCAGTTCAAC---TTGTTTGAAATTTGAGCAGC-TTTTCTTGCTCTTGTTCAGTACATTTATTAAACAGTCCAGGC------------------------------------------------------------------------AGGCCTCCAGAGTTA---Catatat---------------g------tatgtggc--tatgt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          174962 120 -    785044 GATGTGAACTCTTCAGTTCAAC---TTGTTTGAAATTTGAGCAGC-TTTTCTTGCTCTTGTTCAATACATTTATTAAATAGTCTAGGC------------------------------------------------------------------------AGGCCTCCAGAGTta---catatat---------------g------tatgtggc--tatat
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64015 123 -  10971483 GATGTGAACTCTTCAGTTCAACTTGTTGTTTGAAATTTGAGCAGC-TTTTCTTGCTCTTGTTCAATACATTTATTAAACAGTCCAGGC------------------------------------------------------------------------AGGCCTCCAGAGTTA---CATATAC---------------G------TATGTGGC--TATGT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920368 120 -  13128814 GATGTGAGCTCTTCCATTCAAC---TTGCTTGAAATTTGAATAGC-TTTTCTTGCTCTTGTTCAATACACTTACTGAACAGTACAGGC------------------------------------------------------------------------AGGCCTCCAGAGTTA---CATATAT---------------G------TATGTGGC--TGTGT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648739 122 +  14377064 GATGTGAGCTCTTCAATTCAAC---TTGTTTGAACTTTGAACAGC-TTTTCTTGTTCTTGTTCAATACACTTACTGAACAGTACAGCC------------------------------------------------------------------------GGGCCTCCAGAGTTA---GACACAC---------------A------TGTGTGGCTGTGTGT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4116971 120 -   9889416 GATGTGATCTCTTCAATTCAAC---TTGTTTGAAATTTGAACAGC-TTTTCTCGCTCTTGTTCAATACACTTACTGAACAGTACAGGC------------------------------------------------------------------------AGGCCTCCAGAGTTA---CATACAT---------------G------GATGTGGC--TGTGT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20744885 125 +  38779656 TATCTGAGCTCCTCACTGCAGTTTATTGACTGAAATTTGAGCAGC-TTTTCTTGCTTTTGTTTAATATAGTTACTGGATAG----GTC------------------------------------------------------------------------AGGCTTTCAGAGTTA---CAAGTAT---------------GGGAGGTTGGATGCC--TATGT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28781057 208 -  39895921 GGGGTCAGCTCCTTCATTAAGCTGGTTG-TTGAAATTTGAGCAAC-TTTTCTT----CTTTTTAATATAGTTACTGACCAGTCCAAGCCTCCAACTTTGCCAAATATATGAAATTATATAAAGAGTAATTTGACAAAATAAAGCAGATGCCTTTCTGTAACAGCCTTTGGACTTATAGCATAAATCCTGTCAACTGGTTAA------TAATTGCT--TTAGC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6674772 110 +   6883506 ----GGAATTCCTCAGTTGAGTTAGTTGGTTGAAATTTGATCAGC-CTGTCTTCCTTTTGTTTTACATA---ACTGACCAGTCCAGCC----------------------------------------------------------------------------TTCC--AGTTA---CTGGTAT---------------A------TATGAGAT--AATAT
i dasNov3.JH568778             C 0 I 125
e mm10.chr16                    22686336 2050 -  98207768 I
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=64090.000000
s hg38.chr14_GL000009v2_random    165145  8 +    201709 GTGTATAT--------
s panTro5.chr9                  41855468  8 + 116767853 GTGTATAT--------
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816542  8 + 205426864 GTGTATat--------
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226032  8 +    245036 GTGTATAT--------
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102222  8 -  86207423 GTGTATAT--------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258923  8 - 204787373 GTGTATAT--------
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158130  8 - 192460366 GTGTATAT--------
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177628  8 -  11645122 GTGTATAT--------
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162898  8 -   6739814 gtgtatgt--------
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52653  8 - 101219884 gtgtatgt--------
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175082  8 -    785044 gtatatat--------
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64138  8 -  10971483 GTATATGT--------
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920488  8 -  13128814 GTGTATAT--------
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648861  8 +  14377064 GTGTATAT--------
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117091  8 -   9889416 GTGTATAT--------
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20745010  8 +  38779656 TTGTGAAT--------
i otoGar3.GL873528             C 0 I 524
s canFam3.chr31                 28781265 16 -  39895921 TTATGAATTGTGAAAT
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22686336 2050 -  98207768 I
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e dasNov3.JH568778               6674882 125 +   6883506 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=92563.000000
s hg38.chr14_GL000009v2_random    165153  9 +    201709 ATACATAGA----------
s panTro5.chr9                  41855476  9 + 116767853 ATACATAGA----------
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816550  9 + 205426864 atacataga----------
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226040  9 +    245036 ATACATAGA----------
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102230  9 -  86207423 ATACACAGA----------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258931 19 - 204787373 ATACATAGAAGCACTATGC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158138 19 - 192460366 ATACATAGAAGCACTATGC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177636 19 -  11645122 ATACATAGAAGCACTATGC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162906 19 -   6739814 atACATAGAAACACTATGC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52661 19 - 101219884 atACATAGAAGCACTATGC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175090 19 -    785044 atacataGAAGCACTATGC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64146 19 -  10971483 ATACATAGAAGCACTATGC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920496 19 -  13128814 AAACATAGAAGCACTATGC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648869 19 +  14377064 ATACATAGAAGCACTATGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117099 19 -   9889416 ACACATGGAAGCACTATGC
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28781281 19 -  39895921 AAAAATGAAAGCACTATAT
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22686336 2050 -  98207768 I
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20745018 524 +  38779656 I
e dasNov3.JH568778               6674882 125 +   6883506 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=259048.000000
s hg38.chr14_GL000009v2_random    165162 30 +    201709 AGTACAAATAGCATATAAACAA---TTTACATA
s panTro5.chr9                  41855485 30 + 116767853 AGTACAAATAGCATATAATCAA---TTTACATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816559 30 + 205426864 aatacaaatagcatataataaa---ttgacata
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226049 30 +    245036 AATACAAATAGCATATAATCAA---TTTACATA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102239 30 -  86207423 AGTACAAATAGCAGATAATCAA---TTTACATA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258950 30 - 204787373 AGTACAAATAGCACATAATCAA---TTTACATA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158157 30 - 192460366 AGTACAAATAACACATAATCAA---TTTACATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177655 30 -  11645122 AGTACAAATAGCACTTAATCAA---TTTACATA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162925 30 -   6739814 AGTACAAATAGCATACAATCAA---TTTACATA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52680 30 - 101219884 AGTACAAATAGCATATAATCAA---TTTACATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175109 30 -    785044 AGTACAAATAGCACATAATCAA---TTTACGTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64165 30 -  10971483 AGTAGAAATAGCATATAATAAA---TTTACATA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920515 30 -  13128814 AGTACAAATAGCATATAATCAA---TTTATGTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648888 29 +  14377064 AGTACAAATAGCATATAATCAA---TTTACG-A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117118 30 -   9889416 AATACAAATAGCATATAATCGA---TTTACATA
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28781300 31 -  39895921 AGTTACAATAGCATATAATTTAAATCCTACA--
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6675007 32 +   6883506 AGTAACAATAGGGTATAATTAAAG-TTAACGAA
i dasNov3.JH568778             I 125 C 0
e mm10.chr16                    22686336 2050 -  98207768 I
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20745018 524 +  38779656 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=299812.000000
s hg38.chr14_GL000009v2_random    165192 30 +    201709 -AGACTTGTGCTTTTGATGAAAA---TTCTTCTA
s panTro5.chr9                  41855515 30 + 116767853 -AGAATTTTGCTTTTGATTAAAA---TTCTTCTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816589 30 + 205426864 -AGACGTTTGCTTTTGATGAAAA---TTCTTCTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226079 30 +    245036 -AGACGTTTGCTTTTGATGAAAA---TTCTTCTA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102269 28 -  86207423 -AGACTTTTGCTTTTGATGAAAA---TTCT--TA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204258980 30 - 204787373 -AGACTTTTGCTTTTGATGAAAA---TTCTTCTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158187 30 - 192460366 -AGACTTTTGCTTTTGATGAAAA---TTCTTCTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177685 30 -  11645122 -AGACTTTTGCTTTTGATGAAAA---TTCTTCTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162955 30 -   6739814 -AGACTTTTGCTTTTGATGAAAA---TTCTTCTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52710 30 - 101219884 -AGACTTTTGCTTTTGATGAAAA---TTCTTCTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175139 30 -    785044 -AGACTTTTGCTTTTGATGAAAA---TTCTTCTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64195 30 -  10971483 -CGACTTTTGCTTTTGATGAAAA---TTCTTCTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920545 30 -  13128814 -AGGCTTTAGTTTTTGAAGAAAA---TTCTTCTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648917 33 +  14377064 -AGACTTTTGTTTTTGAAGAAAATTCTTCTTCTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117148 30 -   9889416 -AGACTTTTGTTTTTGAAGAAAA---TTCTTCTA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20745542 27 +  38779656 -AAACTTTTGCTTCTGAAGAAAG---TTC---TA
i otoGar3.GL873528             I 524 C 0
s canFam3.chr31                 28781331 29 -  39895921 -AGGCTTTCA-TTTGGCAGAAAA---TTCCTCTA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6675039 31 +   6883506 AAATCTTAGGTTTTTGAAGAAAA---TTCTCCTG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22686336 2050 -  98207768 I
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=346825.000000
s hg38.chr14_GL000009v2_random    165222 30 +    201709 AAGGTGA--ATATAAATTAATAGCATATGGGG
s panTro5.chr9                  41855545 30 + 116767853 AAAGTGA--ATATAAATTAATAGCATATGGAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816619 30 + 205426864 AAAGTGA--ATATAAATTAATAGCATATGGAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226109 30 +    245036 AAAGTGA--ATATAAATTAATAGCATATGGAG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102297 30 -  86207423 AAAGTGA--ATATAAATTAATAGCATATGGAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259010 30 - 204787373 AAAGTAA--ATATAAATTAATAACATATGGCG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158217 30 - 192460366 AAAGTAA--ATATAAATTAATAACATATGGCG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177715 30 -  11645122 AAAGTAA--ATATAAATTAATAGCATATGGCG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          162985 30 -   6739814 AAAGTAA--ATATAAATTAATAGCATATGGCG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52740 30 - 101219884 AAAGTAA--ATATAAATTAATAGCATATGGCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175169 30 -    785044 AAAGTAA--ATATAAATTAATAGCATATGGCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64225 30 -  10971483 AAAGTGA--ATATACATTAATAGCATATGGCA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920575 30 -  13128814 AAAGTGA--ATATAAATTAATAGCATGTGAGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648950 30 +  14377064 AAAGTGA--ATATAAATTAATAGCATGTGGAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117178 30 -   9889416 AAAGTGA--ATATAAATTAATAGCATGTGGAG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20745569 30 +  38779656 AAAGTGC--ATATAAATCAATAGCATTTAGAA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22688386 30 -  98207768 AAGATGA--TTTTAAATTAATTACATATAGGA
i mm10.chr16                   I 2050 C 0
s canFam3.chr31                 28781360 30 -  39895921 AAAGTAT--ATATAAATTAAGAGCATATAggg
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6675070 29 +   6883506 --AGTAATTACATAAATTAA-AGCATACGAAA
i dasNov3.JH568778             C 0 I 2177
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=53951.000000
s hg38.chr14_GL000009v2_random    165252 5 +    201709 CCTAC
s panTro5.chr9                  41855575 5 + 116767853 CCTAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816649 5 + 205426864 CCTAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226139 5 +    245036 CCTAC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102327 5 -  86207423 CCTAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259040 5 - 204787373 CCTAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158247 5 - 192460366 CCTAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177745 5 -  11645122 CCTAC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163015 5 -   6739814 CCTAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52770 5 - 101219884 CCTAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175199 5 -    785044 CCTAC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64255 5 -  10971483 CCTAC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920605 5 -  13128814 CGTAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648980 5 +  14377064 CCTAC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117208 5 -   9889416 CCTAC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20745599 5 +  38779656 CATGT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22688416 5 -  98207768 CCTAT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28781390 5 -  39895921 cagcc
i canFam3.chr31                C 0 I 367
s dasNov3.JH568778               6677276 5 +   6883506 CTTAT
i dasNov3.JH568778             I 2177 C 0
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=409476.000000
s hg38.chr14_GL000009v2_random    165257 47 +    201709 AAAAATTG-----TCTAATAGGGAACTAGGAAAAGATAATTTGTGAAGAAAA
s panTro5.chr9                  41855580 47 + 116767853 AAAAATTG-----TCTAATAGGGAAGTAGGAAAAGGTAATTTGTGAAGAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816654 47 + 205426864 AAAAATTG-----TCTAATAGGCAAGTAGGCAAAGATAATCTGTGAACAAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226144 47 +    245036 AAAAATTG-----TCTAATAGGCAAGTAGGCAAAGATAATCTGTGAACAAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102332 47 -  86207423 AAAAATTG-----TCTTATAGGCAAGTAGGCAAAGATAATCTGTGAAAAAAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259045 47 - 204787373 AAAAATTG-----TCTAATAGGTAAGCAGGCAAAGATAATCTGTGAACAAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158252 47 - 192460366 AAAAATTG-----TCTAATAGGTAAGCAGGCAAAGATAATCTGTGAACAAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177750 47 -  11645122 AAAAATTG-----TCTAATAGGTAAGCAGGCAAAGATAATCTGTGAACAAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163020 47 -   6739814 AAAAATTG-----TCTAATAGGTAAGCAGGCAAAGATAATCTGTGAACAAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52775 47 - 101219884 AAAAATTG-----TCTAATAGGCAAGCTGGCATAGATAATCTGTGAACAAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175204 47 -    785044 AAAAATTG-----TCTAATAGGCAAGCTGGCATAGATAATCTGTGAACAAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64260 47 -  10971483 AAAAATTG-----TCTAATAGGCAAGCAGGCAAAAATAATCTGTGAACAAAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920610 46 -  13128814 AAAAATTG-----TCTAATA-GCAAGTAGGCCAAGATAATCTGTAAACAAAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7648985 46 +  14377064 AAAAATTG-----TCTAATA-AGAAGTAGGCCAAGATAATCTGTAAACAAAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117213 46 -   9889416 AAAAATTG-----TCTAATA-GCAAGTAGGCCAACGTAATCTGTAAACAAAA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20745604 46 +  38779656 GAAGAGTT-----CCTAATAGGGGAATAGGCAGAGCT-CTCTGTGAAGAAAA
i otoGar3.GL873528             C 0 I 18
s mm10.chr16                    22688421 40 -  98207768 AAGTAACC-----CTAGATGGGTTGATAGA-------AATATCTGAAGGAAG
i mm10.chr16                   C 0 I 2
s canFam3.chr31                 28781762 40 -  39895921 AAGAGTTG-----TCT-ACAGGTGTATAGACAAAGAC-ATCTGGGAA-----
i canFam3.chr31                I 367 C 0
s dasNov3.JH568778               6677281 51 +   6883506 AAAACTTATAGTTTTTAATAGGTGAGAAGGTAAAAGC-ATCTATCAACAAAA
i dasNov3.JH568778             C 0 I 3
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=345725.000000
s hg38.chr14_GL000009v2_random    165304 47 +    201709 AGTTTGCT-AAAACAGAC---TTTTTATTTTTACATGTAATAACTTTATAT
s panTro5.chr9                  41855627 47 + 116767853 AGTTCACT-AAAACAGAC---TTTTTATTTTTACATGTAATAACTTTATAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816701 43 + 205426864 AGTTTGCT-GAAACACAC---TT----TTTTTACATGTAATAACTTTATAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226191 44 +    245036 AGTTTGCT-GAAACATAC---TTT---TTTTTACGTGTAAAAACTTTATAC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102379 44 -  86207423 AGTTTGCT-AAAACATAC---TTT---TTTTTACATGTAATAACTTTGTAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259092 43 - 204787373 AGTTTGCT-AAAACATAC---TT----TTTTTACATGTAATAACTTTATGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158299 43 - 192460366 AGTTTGCT-AAAACATAC---TT----TTTTTACATGTAATAACTTTATGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177797 43 -  11645122 AGTTTGCT-AAAACATAC---TT----TTTTTACATATAATAACTTTATGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163067 43 -   6739814 AGTTTGCT-AAAACATAC---TT----TTTTTACATGTAATAACTTTATGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52822 43 - 101219884 AGTTTGCT-AAAACATAC---TT----TTTTTACATGTAATAACTTTATGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175251 44 -    785044 AGTTTGCT-AAAACATACT--TT----TTTTTACATGTAATAACTTTATGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64307 44 -  10971483 AGTTTGCT-AAAACATACT--TT----TTTTTACATGTAATAACTTTATGT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920656 46 -  13128814 AGTTTGCT-AAAACATGCG--TTTC--TTTCTACATGTAAAAACTTTATGT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649031 46 +  14377064 TGTTTGCT-AAAACATGCG--TTTT--TTTCTACATGTAAAAATTTTATGT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117259 47 -   9889416 AGTTTGCT-AAAACATGCGTTTTTT--TTTCTACATGT-AAAACTTTATGT
i aotNan1.NW_018487195v1       C 0 C 0
s mm10.chr16                    22688463 41 -  98207768 ATCTGGCA-GATACAT-----TT----TTTCTACATGTAATATTTTCATAG
i mm10.chr16                   I 2 C 0
s canFam3.chr31                 28781802 41 -  39895921 TGTTTG------AGATGC---TTTTT-TTTCTTTATGTAGTATCTTTATGT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6677335 45 +   6883506 AGTTTGATCAAGATGCAT---TTT---TTTGTATACATAATATCTTTATGT
i dasNov3.JH568778             I 3 C 0
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20745650 18 +  38779656 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=396846.000000
s hg38.chr14_GL000009v2_random    165351 36 +    201709 TGAAGGGTTTCCAGAAATATAAAATGT----TATAGGGCA
s panTro5.chr9                  41855674 36 + 116767853 TGAAGGGTTTCCAGAAATATAAAATGT----TATAGGGCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816744 36 + 205426864 TGAAGGGTTTCCAGAAATATATAATGT----TATAGGGCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226235 36 +    245036 TGAAGGGTTTCCAGAAATATATAATGT----TATAGGACA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102423 36 -  86207423 CAAAGGGTTTCCAGAAATACATAATGT----TATAGGGCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259135 36 - 204787373 TGAAGGATTTCCAGAAATATATAATGT----TATAGGGCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158342 36 - 192460366 TGAAGGATTTCCAGAAATATATAATGT----TATAGGGCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177840 36 -  11645122 TGAAGGATTTCCAGAAATATATAATGT----TATAGGGCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163110 36 -   6739814 TGAAGGGCTTCCAGAAATATATAATGT----TATAGGGCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52865 36 - 101219884 TGAAGGGTTTCCAGAAATATATAATGT----TATAAGGCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175295 36 -    785044 TGAAGGGTTTCCAGAAATATATAATGT----TATAGGGCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64351 36 -  10971483 TGAAGGGTTTCCAGAAATATATAATGT----TATAGGGCA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920702 40 -  13128814 TGAAGGGTTTCCAGAAATATATAATGTTATATATAGGGCA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649077 40 +  14377064 TGAGGGGTTTCCAGAAATATATAATGTTATATATAGGGCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117306 40 -   9889416 TGAAAGGTTTCCAGAAATATATAATGTTATATATAGGGCA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20745668 31 +  38779656 CAGAGGCTTTCCCGACCT-----ATGC----TGGAGGGCA
i otoGar3.GL873528             I 18 C 0
s mm10.chr16                    22688504 36 -  98207768 TGATGGATTTCCGGGAATATGCAGTTC----TACAGGACA
i mm10.chr16                   C 0 I 88
s canFam3.chr31                 28781843 36 -  39895921 TGGAGGGTTTCCAGAAGTACGTCATGC----TGTAGGTCA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6677380 36 +   6883506 TAAAAAGTTTCTAGAAAAATTTAATGC----TGCACTTCT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=743094.000000
s hg38.chr14_GL000009v2_random    165387 69 +    201709 CTTATCCTGAGACACACGAAGGAGACAAGGGATAGAGCTAGGATGGAAGTGAAAATAAAGGACAAATAG
s panTro5.chr9                  41855710 69 + 116767853 CTTATCCTGAGACACACGAAGGAGACAAGGGATAGAGCTAGGATGGAAGTGAAAATAAAGGACAAATAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816780 69 + 205426864 CTTATCCCAAGACACACGAAGGAGACAAGGGATACAGCTAGGATGGAAGTGAAAATAAAAGACAAATAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226271 69 +    245036 CTTATCCCAAGACAAATGAAGGAGACAAGGGATACAGCTAGGATGGAAGTGAAAATAAAGGACATATAG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102459 69 -  86207423 CTTATCCTGAGACACACAAAGGAGACAAGGGGTAGAGCTAGAATGGAAGGGAAAATAAAGGACAAATAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259171 69 - 204787373 CTTATCCTGAGACACATGAAGGAGACAAGGGATAGAGCTAGGATGGAAGTGAAAATAAAGGACAAATAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158378 69 - 192460366 CTTATCCTGAGACACATGAAGGAGACAAGGGATAGAGCTAGGATGGAAGTGAAAATAAAGGACAAATAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177876 69 -  11645122 CTTATCCTGAGACACATGAAGGAGACAAGGGATAGAGCTAGGATGGAAGTGAAAATAAAGGACAAATAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163146 69 -   6739814 CTTATCCTGAGATACATGAAGGAGACAAGGGATAGAGCTAGGATGGAGGTGAAAATAAAGGACAAATAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    52901 69 - 101219884 CTTATCCTGAGACACATAAAGGAGACAAGGGATAGAGCTAGGATGGAAGTGAAAATAAAGGACAAATAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175331 69 -    785044 CTTATCCTGAGACACATGAAGGAGACAAGGGATAGAGCTAGGATGGAAGTGAAAATAAAGGACAAATAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64387 69 -  10971483 CTTATCCTGAGACACATGAAGGAGACAAGGGATACAGCTAGGATGGAAGTGAAAATAAAGGACAAATAG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920742 69 -  13128814 CTTATCCTGAGATACACGAAGGAGACAAGGGATAGAGCTAGGATGAAAGTGAAAATAAAGGACAAATAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649117 69 +  14377064 TTTATCCTGAGGTCCATGAAGGAGACAAGGGATAGAGCTAGGATGAAAGTGAAAATAAAGGGCAAATAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117346 69 -   9889416 CTTATCCTGAGATACACGAAGGAGACAAGGGATAGAGCTAGGATGAAAGTGAAAATAAAGGACAAATAG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20745699 63 +  38779656 GAGATCGCGTGGAACATGCAGAAGACGAAGGATATGG------TGGGGGTACAAACAAACAATAAATAG
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28781879 63 -  39895921 CTGATCATGAGGAACAGGCAAGAGGCAAAGGATGGA------ATAGAGATGAAAATGAGGAACAAATAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6677416 64 +   6883506 CCAATCACTAGATACATGCAGGAGACAAGGGATAGAA-----GTGGAGGTGGAAATGAAGAAAGAATAG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22688540 88 -  98207768 I
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=249852.000000
s hg38.chr14_GL000009v2_random    165456 23 +    201709 AGATAGATACTTAAGTGGaaatg
s panTro5.chr9                  41855779 23 + 116767853 AGATAGATACTTAAGTGGaaatg
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816849 23 + 205426864 AGATAGATACTTAAGTGGaaatg
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226340 23 +    245036 AGATAGATACTTAAGTGGaaatg
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102528 23 -  86207423 AGATAGATACTTAAGTGGAAATG
i nomLeu3.chr21                C 0 I 7
s rheMac8.chr2                 204259240 23 - 204787373 AGATAGATACTTAAGTGGAAATG
i rheMac8.chr2                 C 0 I 10
s macFas5.chr2                    158447 23 - 192460366 AGATAGATACTTAAGTGGAAATG
i macFas5.chr2                 C 0 I 5
s macNem1.NW_012010856v1          177945 23 -  11645122 AGATAGATACTTAAGTGGAAATG
i macNem1.NW_012010856v1       C 0 I 10
s cerAty1.NW_012001605v1          163215 23 -   6739814 AGATAGATACTTAAGTGGAAATG
i cerAty1.NW_012001605v1       C 0 I 10
s chlSab2.chr22                    52970 23 - 101219884 AGATAGATATTTAAGTGGAAATG
i chlSab2.chr22                C 0 I 10
s manLeu1.NW_012099043v1          175400 23 -    785044 AGATAGATACTTAAGTGGAAATG
i manLeu1.NW_012099043v1       C 0 I 10
s colAng1.NW_012123820v1           64456 23 -  10971483 AGATAGATACTTAAGTGGAAATG
i colAng1.NW_012123820v1       C 0 I 10
s saiBol1.JH378168              10920811 23 -  13128814 AGATAGATACTTAAGTGGAAATG
i saiBol1.JH378168             C 0 I 7
s cebCap1.NW_016107322v1         7649186 23 +  14377064 AGATAGATTCTTAAGTGGAAATG
i cebCap1.NW_016107322v1       C 0 I 10
s aotNan1.NW_018487195v1         4117415 23 -   9889416 AGATAGATACTTAAGTGGAAATG
i aotNan1.NW_018487195v1       C 0 I 10
s otoGar3.GL873528              20745762 23 +  38779656 AATCAAGCCCTTACCTGGACATG
i otoGar3.GL873528             C 0 I 6
s dasNov3.JH568778               6677480 23 +   6883506 AAACAGACCCTTAAGTGTAAATG
i dasNov3.JH568778             C 0 I 4
e mm10.chr16                    22688540 88 -  98207768 I
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28781942  0 -  39895921 C
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=115844.000000
s hg38.chr14_GL000009v2_random    165479 225 +    201709 aaacactgcatgttctcactcataggtgggaattgaacaatgagaacacatgcacacaggaaggggaacatcacacaccagggcctgttgtggggtggggagagggggtagggatagcattaggagatatacctaatgctaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaactaaactgcacgttgtgcacatgtgcccta
s panTro5.chr9                  41855802 224 + 116767853 aaaccctgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaagggaaatatcacacacgagggcctgttgtggggtgggg-gaggggggagggatagcgttaggagatatacctaatgataaatgatgagttaatgggtgcagcacaccaacatggtgcatgtatacatatataactaaactgtacgttgtgcacatgtgcccta
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77816872 225 + 205426864 aaacaccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacactggggactgttgtggggtggggggaggggggagggatagcattaggagatatacctaatgccaaatgacgagttaatgggtgcagcacaccaacatggcgcatgtatacatatgtaactaaactgcacgttgtgcacatgtacccta
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226363 224 +    245036 aaacaccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacactggggactgttgt-gggtggggggaggggggagggatagcattaggagatatacctaatgccaaatgacgagttaatgggtgcagcacaccaacatggcgcatgtatacatatgtaactaaactgcacgttgtgcacatgtacccta
i gorGor5.CYUI01000160v1       C 0 C 0
e mm10.chr16                    22688540  88 -  98207768 I
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204259263  10 - 204787373 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4117438  10 -   9889416 I
e canFam3.chr31                 28781942   0 -  39895921 C
e otoGar3.GL873528              20745785   6 +  38779656 I
e colAng1.NW_012123820v1           64479  10 -  10971483 I
e dasNov3.JH568778               6677503   4 +   6883506 I
e cebCap1.NW_016107322v1         7649209  10 +  14377064 I
e saiBol1.JH378168              10920834   7 -  13128814 I
e manLeu1.NW_012099043v1          175423  10 -    785044 I
e chlSab2.chr22                    52993  10 - 101219884 I
e cerAty1.NW_012001605v1          163238  10 -   6739814 I
e macNem1.NW_012010856v1          177968  10 -  11645122 I
e macFas5.chr2                    158470   5 - 192460366 I
e nomLeu3.chr21                 42102551   7 -  86207423 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=5650.000000
s hg38.chr14_GL000009v2_random    165704 8 +    201709 aaacttaa
s panTro5.chr9                  41856026 8 + 116767853 aaacttaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817097 8 + 205426864 aaacttaa
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226587 8 +    245036 aaacttaa
i gorGor5.CYUI01000160v1       C 0 C 0
s canFam3.chr31                 28781942 8 -  39895921 AAAGTGAA
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22688540 88 -  98207768 I
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204259263 10 - 204787373 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4117438 10 -   9889416 I
e otoGar3.GL873528              20745785 6 +  38779656 I
e colAng1.NW_012123820v1           64479 10 -  10971483 I
e dasNov3.JH568778               6677503 4 +   6883506 I
e cebCap1.NW_016107322v1         7649209 10 +  14377064 I
e saiBol1.JH378168              10920834 7 -  13128814 I
e manLeu1.NW_012099043v1          175423 10 -    785044 I
e chlSab2.chr22                    52993 10 - 101219884 I
e cerAty1.NW_012001605v1          163238 10 -   6739814 I
e macNem1.NW_012010856v1          177968 10 -  11645122 I
e macFas5.chr2                    158470 5 - 192460366 I
e nomLeu3.chr21                 42102551 7 -  86207423 I
e tarSyr2.KE928251v1               71567 13935 -     87482 I

a score=-477.000000
s hg38.chr14_GL000009v2_random    165712 6 +    201709 --agtata
s panTro5.chr9                  41856034 5 + 116767853 --agtat-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817105 5 + 205426864 --agtat-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226595 5 +    245036 --agtat-
i gorGor5.CYUI01000160v1       C 0 C 0
s tarSyr2.KE928251v1               85502 5 -     87482 --AGTTT-
i tarSyr2.KE928251v1           I 13935 N 0
s canFam3.chr31                 28781950 6 -  39895921 GTTGTT--
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22688540 88 -  98207768 I
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204259263 10 - 204787373 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4117438 10 -   9889416 I
e otoGar3.GL873528              20745785 6 +  38779656 I
e colAng1.NW_012123820v1           64479 10 -  10971483 I
e dasNov3.JH568778               6677503 4 +   6883506 I
e cebCap1.NW_016107322v1         7649209 10 +  14377064 I
e saiBol1.JH378168              10920834 7 -  13128814 I
e manLeu1.NW_012099043v1          175423 10 -    785044 I
e chlSab2.chr22                    52993 10 - 101219884 I
e cerAty1.NW_012001605v1          163238 10 -   6739814 I
e macNem1.NW_012010856v1          177968 10 -  11645122 I
e macFas5.chr2                    158470 5 - 192460366 I
e nomLeu3.chr21                 42102551 7 -  86207423 I

a score=-3958.000000
s hg38.chr14_GL000009v2_random    165718 3 +    201709 --taa
s panTro5.chr9                  41856039 1 + 116767853 ----g
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817110 2 + 205426864 ---aa
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226600 1 +    245036 ----a
i gorGor5.CYUI01000160v1       C 0 C 0
s canFam3.chr31                 28781956 3 -  39895921 TTT--
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22688540 88 -  98207768 I
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204259263 10 - 204787373 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4117438 10 -   9889416 I
e otoGar3.GL873528              20745785 6 +  38779656 I
e colAng1.NW_012123820v1           64479 10 -  10971483 I
e dasNov3.JH568778               6677503 4 +   6883506 I
e cebCap1.NW_016107322v1         7649209 10 +  14377064 I
e saiBol1.JH378168              10920834 7 -  13128814 I
e manLeu1.NW_012099043v1          175423 10 -    785044 I
e chlSab2.chr22                    52993 10 - 101219884 I
e cerAty1.NW_012001605v1          163238 10 -   6739814 I
e macNem1.NW_012010856v1          177968 10 -  11645122 I
e macFas5.chr2                    158470 5 - 192460366 I
e nomLeu3.chr21                 42102551 7 -  86207423 I

a score=1365.000000
s hg38.chr14_GL000009v2_random    165721 1 +    201709 a
s panTro5.chr9                  41856040 1 + 116767853 a
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817112 1 + 205426864 a
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226601 1 +    245036 a
i gorGor5.CYUI01000160v1       C 0 C 0
s macFas5.chr2                    158475 1 - 192460366 A
i macFas5.chr2                 I 5 C 0
s canFam3.chr31                 28781959 1 -  39895921 A
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22688540 88 -  98207768 I
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204259263 10 - 204787373 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4117438 10 -   9889416 I
e otoGar3.GL873528              20745785 6 +  38779656 I
e colAng1.NW_012123820v1           64479 10 -  10971483 I
e dasNov3.JH568778               6677503 4 +   6883506 I
e cebCap1.NW_016107322v1         7649209 10 +  14377064 I
e saiBol1.JH378168              10920834 7 -  13128814 I
e manLeu1.NW_012099043v1          175423 10 -    785044 I
e chlSab2.chr22                    52993 10 - 101219884 I
e cerAty1.NW_012001605v1          163238 10 -   6739814 I
e macNem1.NW_012010856v1          177968 10 -  11645122 I
e nomLeu3.chr21                 42102551 7 -  86207423 I

a score=-2005.000000
s hg38.chr14_GL000009v2_random    165722 1 +    201709 -a
s panTro5.chr9                  41856041 1 + 116767853 -a
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817113 1 + 205426864 -a
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226602 1 +    245036 -a
i gorGor5.CYUI01000160v1       C 0 C 0
s macFas5.chr2                    158476 1 - 192460366 -G
i macFas5.chr2                 C 0 C 0
s mm10.chr16                    22688628 1 -  98207768 -A
i mm10.chr16                   I 88 C 0
s canFam3.chr31                 28781960 1 -  39895921 T-
i canFam3.chr31                C 0 C 0
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204259263 10 - 204787373 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4117438 10 -   9889416 I
e otoGar3.GL873528              20745785 6 +  38779656 I
e colAng1.NW_012123820v1           64479 10 -  10971483 I
e dasNov3.JH568778               6677503 4 +   6883506 I
e cebCap1.NW_016107322v1         7649209 10 +  14377064 I
e saiBol1.JH378168              10920834 7 -  13128814 I
e manLeu1.NW_012099043v1          175423 10 -    785044 I
e chlSab2.chr22                    52993 10 - 101219884 I
e cerAty1.NW_012001605v1          163238 10 -   6739814 I
e macNem1.NW_012010856v1          177968 10 -  11645122 I
e nomLeu3.chr21                 42102551 7 -  86207423 I

a score=6937.000000
s hg38.chr14_GL000009v2_random    165723 3 +    201709 aaa
s panTro5.chr9                  41856042 3 + 116767853 aaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817114 3 + 205426864 aag
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226603 3 +    245036 aaa
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102558 3 -  86207423 AAG
i nomLeu3.chr21                I 7 C 0
s macFas5.chr2                    158477 3 - 192460366 AAG
i macFas5.chr2                 C 0 C 0
s saiBol1.JH378168              10920841 3 -  13128814 AAC
i saiBol1.JH378168             I 7 C 0
s otoGar3.GL873528              20745791 3 +  38779656 AAG
i otoGar3.GL873528             I 6 C 0
s mm10.chr16                    22688629 3 -  98207768 AGA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28781961 3 -  39895921 AAG
i canFam3.chr31                C 0 C 0
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204259263 10 - 204787373 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4117438 10 -   9889416 I
e colAng1.NW_012123820v1           64479 10 -  10971483 I
e dasNov3.JH568778               6677503 4 +   6883506 I
e cebCap1.NW_016107322v1         7649209 10 +  14377064 I
e manLeu1.NW_012099043v1          175423 10 -    785044 I
e chlSab2.chr22                    52993 10 - 101219884 I
e cerAty1.NW_012001605v1          163238 10 -   6739814 I
e macNem1.NW_012010856v1          177968 10 -  11645122 I

a score=116547.000000
s hg38.chr14_GL000009v2_random    165726 10 +    201709 aaaATCATCA
s panTro5.chr9                  41856045 10 + 116767853 aaaaTCATCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817117 10 + 205426864 aaaaTCATCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226606 10 +    245036 aaaaTCATCA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102561 10 -  86207423 AAAATCATCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259273 10 - 204787373 AAAATCATCA
i rheMac8.chr2                 I 10 C 0
s macFas5.chr2                    158480 10 - 192460366 AAAATCATCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177978 10 -  11645122 AAAATCATCA
i macNem1.NW_012010856v1       I 10 C 0
s cerAty1.NW_012001605v1          163248 10 -   6739814 AAAATCATCA
i cerAty1.NW_012001605v1       I 10 C 0
s chlSab2.chr22                    53003 10 - 101219884 AAAATCATCA
i chlSab2.chr22                I 10 C 0
s manLeu1.NW_012099043v1          175433 10 -    785044 AAAATCATCA
i manLeu1.NW_012099043v1       I 10 C 0
s colAng1.NW_012123820v1           64489 10 -  10971483 AAAATCATCA
i colAng1.NW_012123820v1       I 10 C 0
s saiBol1.JH378168              10920844 10 -  13128814 AAAATAATCA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649219 10 +  14377064 AAAATAATCA
i cebCap1.NW_016107322v1       I 10 C 0
s aotNan1.NW_018487195v1         4117448 10 -   9889416 AAAATAATCA
i aotNan1.NW_018487195v1       I 10 C 0
s otoGar3.GL873528              20745794 10 +  38779656 AAAATTATCA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22688632 10 -  98207768 AAATTCCCCA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28781964 10 -  39895921 AAAATGGTCA
i canFam3.chr31                C 0 C 0
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e dasNov3.JH568778               6677503  4 +   6883506 I

a score=718008.000000
s hg38.chr14_GL000009v2_random    165736 77 +    201709 AACAGGTGGTAATTTCAAAACATGGCTTTTCCAGGCAGCACATTTTCTGAATGTATCGCAAAAGAAGATAAATTGCA
s panTro5.chr9                  41856055 77 + 116767853 AACAGGTGGTAATTTTAAAACATGGCTTTTCCAGGCAGCAAATTTTCTGAATGTATCACAAAAGAAGATAAATTGTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817127 77 + 205426864 AACAGGTGGTAATTTCAAAACATGGCTTTTCCAGGCAGCAAATTTTCTGAATGTATCGCAAAAGAAGATAAATCATG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226616 77 +    245036 AACAGGTGGTAATTCCAAAACATGGCTTTTCCAGGCAGCAAATTTTCTGAATGTATCGCAAAAGAAGATAAATCATG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102571 77 -  86207423 AACAGATGGTAATTTTAAAACATAGCTTTTCCAGGCAGCAAATTTTCTGAATTTATTGCAAAAGAAGATAAATCATG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259283 77 - 204787373 GACAGGTGGTAATTTTAAAACATGGCTTTTCCAGGCAGCAAATTTTCTGAATGTATCACAAAAGAAGATAAATCATG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158490 77 - 192460366 GACAGGTGGTAATTTTAAAACATGGCTTTTCCAGGCAGCAAATTTTCTGAATGTATCACAAAAGAAGATAAATCATG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          177988 77 -  11645122 GACAGGTGGTAATTTTAAAACATGGCTTTCCCAGGCAGCAAATTTTCTGAATGTATCACAAAAGAAGATAAATCATG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163258 77 -   6739814 GACAGGTGGTAATTTTAAAACATGACTTTTCTAGGCAGCAAATTTTCTGAATGTATCACAAAAGAAGATAAATCATG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53013 77 - 101219884 GACAGGTGGTAATTTTAAAACATGGCTTTTCCAGGCAGCAAATTTTCTGAATGTATCACAAAAGAAGATAAATCATG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175443 77 -    785044 GACAGGTGGTAATTTTAAAACATGGCTTTTCCAGGCAGCAAATTTTCTGAATGTATCGCAAAAGAAGATAAATCATG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64499 77 -  10971483 GACAGATGATAATTTTAAAACATGGCTTTTCCAGGCAGTAAATTTTCTGAATGTATCACAAAAGAAGATAAATCATG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920854 66 -  13128814 AACAGGTGGCAATTTTAAACCATACCTTTTCTAGGCAGCATATATTCTGAATGTATTGC-----------AATCATG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649229 77 +  14377064 ACCAGGTGGTAATTTTAAACCATGACTTTTCTAGGCAGCGTATTTTCTGAATGTATCGCAAAAGAAGATAAATCATG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117458 77 -   9889416 AACAGGTGGTAATTTTAAACCATGACTTTTCTAGGCAGCATATTTTCTGAATGTATCACAAAAGAAGATAAATCATG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20745804 41 +  38779656 GACAGGTGATCATTTTAAAGCATG------------------------------------AAAAAAGGTGTGTCGTG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22688642 58 -  98207768 A--------TGGTTATATAAAATAAATTTGCTAGGCAGCG--TTTTCTGAATAGTGCACAGAATTACA---------
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28781974 75 -  39895921 TGTGGGAGGTCATTTCAAAACGTGACTTTATCAGGTAGCG--TTTTCTAAATGTATCACATGAGCTGATTGATCACC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6677507 54 +   6883506 AATAAGAGGTAATTTCAAA-CATAATTTCTCCAGATAGCA--TTTTCTGAGTGTACC--------------------
i dasNov3.JH568778             I 4 C 0
e micMur3.chr31                 30862580 896 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=2731432.000000
s hg38.chr14_GL000009v2_random    165813 242 +    201709 TGTCTATGTAGATCATGTCAATGAAATAAACAATAAA-GTTACTTATTGGAATA---TTGAA----AGTGGTTGATAATAAATAAATTATTTATATTTATGGTAAAAGCAATAAACTTGATTTTTAGGGGGTTCAATGACTTCCTGAAAATATC----C---TCTCACAGA-TTTTCTCAGAGTGTCTAGTTGGCAAAAGCACAGCTCCAAATAGCTATT---TCTGTCA-ACGTCTACAGAACATTTACAGTTTGATTTCC----
s panTro5.chr9                  41856132 244 + 116767853 TGTCTATGTAGATCATGTCAATGAAATAAACAATAAAGGTTACTTATTGGAATA---TTGAA----AGTGGTTGATAATAAATAAATTATTTATATTTATGGTGAAAGCAATAAACTTGATTTTTAGGGGGTTCAATGACTTCCTGAAAATATT----C---TCTCGCAGATTTTTCTCAGAGTGTCTAGTTGGCAAAAGCACAGCTCCAAATAGCTATT---TCTGTCA-ACGTCTACAGAACATTTACAGTTTGATTTCC----
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817204 239 + 205426864 TGTCTATGTAGATCATGCCAATGAAAT----AATAAAGGTTACTTATTAGAATA---TTGAA----AGTGGTTGATAATAAATAAATTATTTATATTTATGGTAAAAGCAATAAACTTGATTTTTAGTGGGTTCAATGACTTCTGGAAAATATC----C---TCTCACAGA-TTTTCTCAGAGTGTCTAGTTGGCAAAAGCACAGCTCCAAATAGCTATT---TCCGTCA-ACATCTACAGAACATTTACAGTTCAATTTCC----
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226693 240 +    245036 TGTCTATGTAGATCATGCCAATGAAATAAACAATAAAGGTTACTTATTAGAATA---TTGAA----AGTGGTTGATAATAAATAA---ATTTATATTTATGGTAAAAGCAATAAACTTGATTTTTAGGGCGTTCAATGACTTCCGGAAAATATC----C---TCTCACAGA-TTTTCTCAGAGTGTCTAGTTGGCAAAAGCACAGCTCCAAATAGCTATT---TCTGTCA-ACGTCTACAGAACATTTATAGTTCGATTTCC----
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102648 239 -  86207423 TGTCTATGTAGATCATGCCAATGAAATAAACAATAAAGGTTACTTATTAGAATA---TTGAA----AGTGGTTGATAATAAAT----TATTTATATTTATGGTAAGAACAATAAACTTGATTTTTAGGGGGTTCAATGACTTCCTGAAAATATC----C---TTTCACAGA-TTTTCTCAGAGTGTCTAGTTGGCAAAAGCACAGCTCCAAATAGCTATT---TCTGTCA-ACGTCTACAGAACATTTACAGTTTGATTTCT----
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259360 241 - 204787373 TGTCTATGTAGATCATGACAATGAAATAAACAATAAAGGTTACTTATTGGAATA---TTGAA----AGTGGTTGATAATAAATAAATTATTTATATTTATGATAAAAGCCATAAACTTGATTTTTAGGGAGTTCAACGACTTCCTGAAAATATC----C---TCTCACAGA-TTTTCTC--AGTGTCTAGTTGGCAAAAGCACAGCTCCAAATAGCGATT---TCTATCA-ACGCCTACAGAACATTTACAGTTCCACTTCT----
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158567 241 - 192460366 TGTCTATGTAGATCATGACAATGAAATAAACAATAAAGGTTACTTATTGGAATA---TTGAA----AGTGGTTGATAATAAATAAATTATTTATATTTATGATAAAAGCCATAAACTTGATTTTTAGGGAGTTCAACGACTTCCTGAAAATATC----C---TCTCACAGA-TTTTCTC--AGTGTCTAGTTGGCAAAAGCACAGCTCCAAATAGCGATT---TCTATCA-ACGCCTACAGAACATTTACAGTTCCACTTCT----
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178065 241 -  11645122 TGTCTATGTAGATCATGACAATGAAATAAACAATAAAGGTTACTTATTGGAATA---TTGAA----AGTGGTTGATAATAAATAAATTATTTATATTTATGATAAAAGCCATAAACTTGATTTTTAGGGGGTTCAACGACTTCCTGAAAATATC----C---TCTCACAGA-TTTTCTC--AGTGTCTAGTTGGCAAAAGCACAGCTCCAAATAGCGATT---TCTATCA-ATGCCTACAGAACATTTACAGTTCCACTTCT----
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163335 241 -   6739814 TGTCTATGTAGATCATGCCAATGAAATAAACAATAAAAGTTACTTATTGGAATA---TTGAA----AGTGGTTGATAATAAATAAATTATTTATATTTATGATAAAAGCCATAAACTTGATTTTTAGGGGGTTCAACGACTTCCTGAAAATATC----C---TCTCACAGA-TTTTCTC--AGTGTCTAGTTGGCAAAAGCACAGCTCCAAATAGCGATT---TCTATCA-ACGCCTACAGAACATTTACAGTTCCACTTCT----
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53090 241 - 101219884 TGTCTATGTAGATCATGCCAATGAAATAAACAATAAAGGTTACTTATTGGAATA---TTGAA----AGTGGTTGATAATAAATAAATTATTTATATTTATGATAAAAGCCATAAACTTGATTTTTAGGGGGTTCAATGACTTCCTGAAAATATC----C---TCTCACAGA-TTTTCTC--AGTGTCTAGTTGGCAAAAGCACAGCTCCAAATAGCGATT---TCTATTA-ACGCCTACAGAACATTTACAGTTCCACTTCT----
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175520 240 -    785044 TGTCTATGTAGATCATGACAATGAAATAAAAAATAAAGGTTA-TTATTGGAATA---TTGAA----AGTGGTTGATAATAAATAAATTATTTATATTTATGATAAAAGCCATAAACTTGATTTTCAGGGGGTTCAATGACTTCCTGAAAATATC----C---TCTCACAGA-TTTTCTC--AGTGTCTAGTTGGCAAAAGCACAGCTCCAAATAGAGATT---TCTATCA-ACGCCTACAGAACATTTACAGTTCCACTTCT----
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64576 241 -  10971483 TGTCTGTGTAGATCATGCCAATGAAATAAACAATAAAGGTTACTTATTGGAATA---TTGAA----AGTGGTTGATAATAAATAAATTATTTATATTTATGATAAAAGCCATAAACTTGATTTTTAAGGGGTTCAATGACTTCCTGAAAATATC----C---TCTCACAGA-TTTTCTC--AGCGTCTAGTTGGCAAAAGCACAGCTCCAAATAGCGATT---TCTATCA-ATGCCTACAGAACATTTACAGTTCCACTTCT----
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10920920 237 -  13128814 TGTCTATGTAGATCATGCCAATGAAATAAACAATGAAGGTTATTTATTAGAATA---TTGAA----AGTGCTCGTT----AATACATTATTTATA------GTAAAAGCAATAAACTTGATTTTTAGGGGGTTCAATGACTTCCTGAACATATCCCCAC---CCCCACAGA-TTGTCTCAGAGTGTCTCGTTGGCAAAAGTACAGTTCCAAATAGCTATT---TCTGTCA-ACATCTACAGCACATTTACAGTTCGATTTCC----
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649306 237 +  14377064 TGTCTGCGTATATCATGACAATGAAAT----AATGAAGGTTATTTATTAGAATA---TTGAA----AGTGGTTGGTAATAAATACATTATTTATA------GTAAAAACAATAAACTTGATTTTTAGGGGGTTCGATGACTTCCTAAACATATCCCAAC---CCCCACAGA-CTTTCTCAGAATGTCTCGTTGGCAAAAGCACAGTTCTAAATAGCTATT---TCTATCA-ACGTCTACAGCACATTTACAGTTCAATTTCC----
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117535 237 -   9889416 TGTCTATGTAGATCATGCCAATGAAATAAACAATGAAGG----TTATTAAAATA---TTGAA----AGTGTTTGTTAATAAATGCATTATTTATA------GTAAAAGCAATAAACTTGATTTTTAGGGGGTTCAATGACTTCCTGAACATATCCCGAC---CCCCACAGA-TTTTCTCAGAGTGTCTCGTTGGCAAAAGCACAGTTCCAAATAGCTATT---TCTATCA-ACGTCTACAGCACATTTACAGTTTGATTTCC----
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30863476 243 -  47401472 TGTTTATGTAGATCATGCCAATGAAATAAACAATAAAGGCTATTTATTAGACTA---CTGAA----AATGGTTGATAGTGGACAAATTACTTATGTTTATGGTAAAAACAATAAAATTGATTTTTAGATGGTACAATGACTTCCTGAAAATATA----C---CCCCACAGA-TTTTCTCAGAGTGTCCAGTTGGTAAAAGCCCAGCTCCAAACAGCTATT---TCCATCG-ATGTCAACAGAATATCTATAGTTCTATTTTT----
i micMur3.chr31                I 896 C 0
s otoGar3.GL873528              20745845 239 +  38779656 TGTTGAAGTAGAACGTGGCAG-GGAATAAA----AAGTGTAATTTACTAGGCTA---CTGAA----AATGGTTGATAGTGGGTAAATTATTTATGTTTATGACAGAAGCAATGAACTTTATTTTTTAGGGGTATGAAGACTTTCTGAAAATATC----TCCACCCCACAGG-TTTTCTC--AGTGTTCAGTTGGCAAAATCACAGCTCTGAACGCTTAAT---TTTGTCA-ACATTGACAGATTATTTACAGTCCTATCTTC----
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22688700 220 -  98207768 GATGTACATACATTATAACAGCGAAGGAAGCAA-----------TTTTGAAATATGTTTGGAACTCATTAGTTGAGAGTTGATAAATTATTTGTATTTGTGGT-AAAGCAATAAAACTC--------GAGGTTCACAGACGTCCTAAGAAAAAT----A--------GAAA-TATTTTAAGGATGTGAAATTGTTCATAACGTAGCTTCAAACTGGTATT---TCCA------GTTATTGGTATAAACATGGTTTCATTTTC----
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28782049 244 -  39895921 TGTTTATGTAAGTTATGCCATGGAAATAAGCCATGAAGGCTATGTATTATAGTC---TTACA----AATGGTTGATAGTGGATGAATTATTTATACTTATGTTAAAAGCAATAATCTTGATTTTTAAGGAGTGTAATGACCTCTTGAAC-TATC----T---TCCAATGGA-TTTTCTAGGAGTGTCTCACTGGCAAAAGCTCAGCCCCAAATAGCTACTACCTTCATCA-AAGTGTA-AGGACATTTACAGTTTCATTTTC----
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6677561 228 +   6883506 -------------------AATAGAAAAAACAATAAAGTCTATTTATTGAAATA---TTGAA----AATGGTTAATAGTGGATAAATTATTTGTATTTATGGTAAAAGCAAT-ATCTTGATTTTTAGGGGATGCAAGGACTTCCTGGAAATATC----C---CCCAACAAA-TTTTCTGGAAGTTTCTATTTGGCAAAAGTAGATCTCTAAACTGCTACT---GTAATCAGAAGCATACAGGTCATGCACAGTTTTAATTTGCCCT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           69318 1947 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=6185.000000
s hg38.chr14_GL000009v2_random    166055 1 +    201709 A
s panTro5.chr9                  41856376 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817443 1 + 205426864 G
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226933 1 +    245036 G
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102887 1 -  86207423 G
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259601 1 - 204787373 G
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158808 1 - 192460366 G
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178306 1 -  11645122 G
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163576 1 -   6739814 G
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53331 1 - 101219884 G
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175760 1 -    785044 G
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64817 1 -  10971483 G
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10921157 1 -  13128814 A
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649543 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117772 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30863719 1 -  47401472 A
i micMur3.chr31                C 0 I 1
s eulFla1.LGHW01000695v1           71265 1 +   1229009 A
i eulFla1.LGHW01000695v1       I 1947 I 2913
s otoGar3.GL873528              20746084 1 +  38779656 A
i otoGar3.GL873528             C 0 I 1
s mm10.chr16                    22688920 1 -  98207768 A
i mm10.chr16                   C 0 I 2
s canFam3.chr31                 28782293 1 -  39895921 A
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6677789 1 +   6883506 G
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=1042045.000000
s hg38.chr14_GL000009v2_random    166056 82 +    201709 AAAGTTTCCATTTC-------TACTGACCTTACAAATTTGTAAAGTGAATGCCCACCAGGACAAAATATTAAGTGATAAAATTAATTGG
s panTro5.chr9                  41856377 82 + 116767853 AAAGTTTCCATTTC-------TCCTGACCTTACAAATTTGTAAAATGAATGTCCACCAGGACAAAATATTAAGTGATAAAATTAATTGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817444 82 + 205426864 AAAGTTTCCATTTC-------TACTGACCTTACAAATTTGTAAAATGAATGCCCAGCACGACAAAATATTAAGTGATAAAATTAATTGG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          226934 82 +    245036 AAAGTTTCCATTTC-------TACTCACCTTACAAATTTGTAAAATGAATGCCCAGCACGACAAAATATTAAGTGATAAAATTAATTGG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102888 82 -  86207423 AAAGTTTCCATTTC-------TACTGATCTTACAAATTTGTAAAATGAATGCCCACCAGGACAAAATATTAAGTGATAAAATTAATTGG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259602 82 - 204787373 AAAGTTTCCATTTC-------TACTGACCTTACAAATTTGTAAAATGAATGCCCACTAGGACAAAATATTAAGTGATAAAATTAATTGG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158809 82 - 192460366 AAAGTTTCCATTTC-------TACTGACCTTACAAATTTGTAAAATGAATGCCCACTAGGACAAAATATTAAGTGATAAAATTAATTGG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178307 82 -  11645122 AAAGTTTCCATTTC-------TACTGACCTTACAAATTTGTAAAATGAATGCCCACTAGGACAAAATATTAAGTGATAAAATTAATTGG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163577 82 -   6739814 AAAGTTTCCATTTC-------TACTGACCTTACAAATTTGTAAAATGAATGCCCACTAGGACAAAATATTAAGTGATAAAATTAATTGG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53332 82 - 101219884 AAAGTTTCCATTTC-------TACTGACCTTACAAATTTGTAAAATGAATGCCCACTAGGACAAAATATTAAGTGATAAAATTAATTGG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175761 82 -    785044 AAAGTTTCCATTTC-------TACTGACCTTACAAATTTGTAAAATGAATGCCCACCAGGAGAAAATATTAAGTGATAAAATTAATTGG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64818 82 -  10971483 AAAGTTTGCATTTC-------TACTGACCTTATAAATTTGTAAAATGAATGTCCACCAGGACAAAATATTAAGTGATAAAATTAATTGG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10921158 82 -  13128814 AAAGTTTCCATTTC-------TACTGACCTTACAAATTTGTAAAATGAATGCCTACCAGGACAGAATTTTAAATGGTACAATGAATTGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649544 82 +  14377064 AAAGTTTTCATTTC-------TACTGACCTTACAAATTTGTAAAATGAATGCCTCCCAGGACAGAATTTTAAATGGTCAAATGAATTGA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117773 82 -   9889416 AAAGTTTCCATTTC-------TACTGACCTTACAAATTTGTAAAATGAATGCCTACCAGGACAGAATTTTAAATGGTAAAATGAATTGG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30863721 82 -  47401472 AAAGTTTCAAGTTC-------TACTGTTCTTACAAATTTTTAAGATGAATGCCCACCAGGATAAAATATTAAATGGTAACATTAATTAG
i micMur3.chr31                I 1 I 14
s otoGar3.GL873528              20746086 82 +  38779656 AAAGTTTGAAGCTC-------TATTGTCCTTATCAGTGTGTAAGATGAAAGCCTACCCAGAGAAAATATTACAGAGAAAAATTAATTGA
i otoGar3.GL873528             I 1 C 0
s mm10.chr16                    22688923 81 -  98207768 ATTCTTTACATTAC--------ATTGTTCTTGAAAAATTGTAAAATAAGTGCATACCATGCTAAAATATCAAGGGAAAGAATGAATTGG
i mm10.chr16                   I 2 C 0
s canFam3.chr31                 28782294 84 -  39895921 -----GCACATTTCAGCAAGTTGCCTTCCTTACAAATTTATAAGATGAATACCAATCAGGATAAAATATTAAATGGTAAAATAAATTGG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6677790 82 +   6883506 AAAGTTTCAAGTTC-------TAATATCCTTACTAGTTTATAATGAGATTGTCTACTAGGATAAAATATTAAATGGTAAAATGAAGCAG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=333773.000000
s hg38.chr14_GL000009v2_random    166138 31 +    201709 ATCCTACAAGTGAAAATCTAGGCAAGGAAAA
s panTro5.chr9                  41856459 31 + 116767853 ATCCTGCAAGTGAAAATCTAGGCAAGGAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817526 31 + 205426864 ATCCTACAAGTGAAAATCTAGGCAAGGAAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          227016 31 +    245036 ATCCTACAAGTGAAAATCTAGGCAAGGAAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42102970 31 -  86207423 ATCCTACAAGTGAAAATCTAGGCAAGGAAAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259684 31 - 204787373 ATCCTACAAGTGAAAATCTAGGCAAGAAAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158891 31 - 192460366 ATCCTACAAGTGAAAATCTAGGCAAGAAAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178389 31 -  11645122 ATCCTACAAGTGAAAATCTAGGCAAGAAAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163659 31 -   6739814 ATCCTACAAGTGAAAATCTAGGCAAGAAAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53414 31 - 101219884 ATCCTACAAGTGAAAATCTAGGCAAGAAAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175843 31 -    785044 ATCCTACAAGTGAAAATCTAGGCAAGAAAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64900 31 -  10971483 ATCCTACAAGTGAAAATCTAGGCAAGAAAAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10921240 31 -  13128814 ATTCTATAAGTAAAAATCTAACCCAGAAAAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649626 31 +  14377064 ATCCTATGAGTGAAAATCTAACCTAGAAAAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117855 31 -   9889416 ATCCTACAAGTGAAAATCTAACCCAGAAAAA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20746168 29 +  38779656 ATCCTACACGTGAAAATCTAGGCCACTAG--
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22689004 31 -  98207768 ATTGCAAGAGTCAATATGTAGGCCAGAACAA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28782378 31 -  39895921 TTCCTACAAGTGAAAAGCTACGCCACTTCAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6677872 31 +   6883506 ATCCTGCAAATGAAAAGCAAGGCTACCATGG
i dasNov3.JH568778             C 0 I 482
e micMur3.chr31                 30863803 14 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=6150.000000
s hg38.chr14_GL000009v2_random    166169 2 +    201709 TC
s panTro5.chr9                  41856490 2 + 116767853 TC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817557 2 + 205426864 TC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          227047 2 +    245036 TC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103001 2 -  86207423 TC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259715 2 - 204787373 TC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158922 2 - 192460366 TC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178420 2 -  11645122 TC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163690 2 -   6739814 TC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53445 2 - 101219884 TC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175874 2 -    785044 TC
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10921271 2 -  13128814 TC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649657 2 +  14377064 TC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117886 2 -   9889416 TC
i aotNan1.NW_018487195v1       C 0 C 0
s mm10.chr16                    22689035 1 -  98207768 C-
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28782409 1 -  39895921 T-
i canFam3.chr31                C 0 C 0
e micMur3.chr31                 30863803 14 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20746197 0 +  38779656 C
e colAng1.NW_012123820v1           64931 0 -  10971483 C
e dasNov3.JH568778               6677903 482 +   6883506 I

a score=1753981.000000
s hg38.chr14_GL000009v2_random    166171 137 +    201709 TTCTTCCTTCTTAATGAATGATTTTTA--TGTCTCT--------TCA-TTCTTGTCCTT--CTAGGTAGAGCAACACTCTGGAGACCTTCTTTTGAGG--CATTTCACCACCAGAGTAAGTGTGATGTGTGAGTAATTAGTCTACCCACAGG
s panTro5.chr9                  41856492 137 + 116767853 TTCTTCCTTCTTAATGAATGATTTTTA--TGTCTCT--------TCA-TTCTTGTCCTT--CTAGGTAGGGCAACACTCTGGAGACCTTCTTTTGAGG--CATTTCACCACCAGAGTAAGTGTGATGTATGACTAATTAGTCCACCCACAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817559 137 + 205426864 TTCTTCCTTCTTAATGAATGATTTTTA--TGTCTCT--------TCA-TTCATGTCCTT--CTAGGTAGAGCAACACTCTGGAGACCTTCCTTTGAGG--CATTTCACCACCACAGTAAGTGTGATGTATGACTAATTAGTCCACCCACAGG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          227049 137 +    245036 TTCTTCCTTCTTAATGAATGATTTTTA--TGTCTCT--------TCA-TTCATGTCCTT--CTAGGTAGAGCAACACTCTGGAGACCTTCCTTTGAGG--CATTTCACCACCACAGTAAGTGTGATGTATGACTAATTAGTCCACCCACAGG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103003 136 -  86207423 TTCTTCCTTCTTAATGAATGATTTTTA--TGTCTCT--------TTA-TTCATGTCCTT--CTAGGTAGAGCAACACTCTGCAGACCTT-TTTTGAGG--CATTTCACCACCAGAGTAAGTGTGATGTATGACTAATTAGTCCACCCACAGG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259717 137 - 204787373 TTCTTCCTTCTTAATGAATGATTTTTA--TGTCTCT--------TCA-TTCATGTCCTT--CTAGGTAGGGCAACACTCTGGAGACCTTCTTTTGAGG--CATTTCTCCACCAGAATAAGTGTGATGTATGATTAATTAGTCCACCCACGGG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    158924 137 - 192460366 TTCTTCCTTCTTAATGAATGATTTTTA--TGTCTCT--------TCA-TTCATGTCCTT--CTAGGTAGGGCAACACTCTGGAGACCTTCTTTTGAGG--CATTTCTCCACCAGAATAAGTGTGATGTATGATTAATTAGTCCACCCACGGG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178422 137 -  11645122 TTCTTCCTTCTTAATGAATGATTTTTA--TGTCTCT--------TCA-TTCATGTCCTT--CTAGGTAGGGCAACACTCTGGAGACCTTCTTTTGAGG--CATTTCTCCACCAGAATAAGTGTGATGTATGATTAATTAGTCCACCCACGGG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163692 137 -   6739814 TTCTTCCTTCTTAATGAATGATTTTTA--TGTCTCT--------TCA-TTCATGTCCTT--CTAGGTAGGGCAACACTCTGGAGACCTTCTTTTGAGG--CATTTCTCCACCAGAATAAGTGTGATGTATGATTAATTAGTCCACCCACAGG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53447 137 - 101219884 TTCTTCCTTCTTAATGAATGATTTTTA--TGTCTCT--------TCA-TTCATGTCCTT--CTAGGTAGGGTAGCACTCTGGAGACCTTCTTTTGAGG--CATTTCTCCACCAGAATAAGTGTGATGTATGATTAATTAGTCCACCCACGGG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          175876 137 -    785044 TTCTTCCTTCTTAATGAATGATTTTTA--TGTCTCT--------TCA-TTCATGTCCTT--CTAGGTAGAGCAACACTCTGGAGACCTTCTTTTGAGG--CATTTCTCCACCAGAATAAGTGTGATGTATGATTAATTAGTCCACCCACGGG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           64931 136 -  10971483 -TCTTCCTTCTTAATGAATGATTTTTA--TGTCTCT--------TCA-TTCATGTCCTT--CTAGGTAGAGCAACACTCTGGAGACCTTCTTTTGAGG--CATTTCTCCACCAGAATAAGTGTGATGTATGACTAATTAGTCCACCCACGGG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10921273 137 -  13128814 TTCCTCCTTCTTAATGAATGATTTTCA--TGTCTCT--------TCA-TTCATGTCCTT--CTGGGTAGAGCAACACCCTGGAGATCTTCTTTTGAGG--CATTTCACCACCAGTAGAAGTGTGATGTATGACTAATTAGTCCACCCACAGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649659 136 +  14377064 TTCTTCCTTCTTAATGAATGATTTTCA--TGTCTCT--------TCA-TTCATGTGCTT--CTGGGTAGAGCAAT-CCCTGGAGATCTTCTTTTGAGG--CATTTCGCCACCAGCAGAAGTGTGATGTATGACTAATTAGTCCACCCACAGG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4117888 137 -   9889416 TTCTTCCTTCTTAATGAATGATTTTCA--TGTGTCT--------TCA-TTCATGTCCTT--CTGGGTAGAGCAACACCCTGGAGATCTTCTTTTGAGG--CATTTCCCCACCAGTAGAAGTGTGATGTATGACTAATTAGTCCACCCACAGG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30863817 137 -  47401472 TTCTTCTAACTTAATGAATGATATTTT--TGTCTTT--------TCA-TTCATGTCCTT--CAAGGTAGAGCAACACTCTGGAGACCTTCTTTTGAGA--CTCTTGGCCACAAGTATAACTGTGTTGTATAACTAATTAGCCCACCCACAGG
i micMur3.chr31                I 14 I 163
s otoGar3.GL873528              20746197 138 +  38779656 TCTTTCCTTCTTAATGAATGATTTTTT-ATGGCTCT--------TCA-TTCATGTCCTT--CCAGGTGGAGCAACACTCTGGAGACCTTCTTTACAGA--GTCTTGGCCACCAGTATAACTGTGATATATAACTAATTAGCCAACCCACAGG
i otoGar3.GL873528             C 0 I 1
s mm10.chr16                    22689036 147 -  98207768 TCATCTTTTTTTGATGAATGATTTTTT--TTTTTTTTTAGTTTCTCA-TTCCTGTCTTT--ATTCATAGAGCAGTAGTCTGGGGACCTTTTTTGGAGACTCTCTTACCTATCAATGTAGAAGTGACATACAGTTAATTACCCCACTCTCAGA
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28782410 137 -  39895921 -TCTTCTTTCTTAATAATTGATTTGTAGAAATATTT--------TTA-TTCATGTCCTT--ATAAGGGCAGCAACACTCTCAAGAATTTCTTGTGAGA--C-CATAGCCACCAATATAACTGCAATTTATAACTAATTAGCCCACCTACAGG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6678385 129 +   6883506 ttcctCCCTCTTAATGAATGATT------TGTCTCT--------TCAGTCCATATCTTTGCACAAGCGGAGAAGCAGTCTTAAGACCTTTGTTTGAGA--CCCATGGCTACCAATACAGTTG-------TAACTAATTAGTACACCAACTAG
i dasNov3.JH568778             I 482 C 0
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=580310.000000
s hg38.chr14_GL000009v2_random    166308 62 +    201709 GAGCTGGTGAAATTAAATTGGAAGTTATTTCCTAACTGGCATATCCTGGAGTAAAATTAATC
s panTro5.chr9                  41856629 61 + 116767853 GAGCTGGTGAAATTAAATTGGAAGTTATTTCCTAACTGGCATATCTTGGATT-AAATTCATC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817696 62 + 205426864 GGGCTGGTGAAATTAAATTGGAAGTTGTTTCCTAACTGGCATATCTTGGACTAAAATTAATC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          227186 62 +    245036 GGGCTGGTGAAATTAAATTGGAAGTTGTTTCCTAACTGGCATATCTTGGACTAAAATTAATC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103139 62 -  86207423 GGGCTGGTGAAATTAAATTGGAAGTCCTTTCCTAACTGGCATATCTTGGAGTAAAATTAATC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259854 62 - 204787373 GGGCTGGTGAAATTAAATTGGCAGTTATTTCCTTACTGGCATATCTTGGAGTAAAATTAATC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    159061 62 - 192460366 GGGCTGGTGAAATTAAATTGGCAGTTATTTCCTTACTGGCATATCTTGGAGTAAAATTAATC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178559 62 -  11645122 GGGCTGGTGAAATTAAATTGGCAGTTATTTCCTTACTGGCATATCTTGGAGTAAAATTAATC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163829 62 -   6739814 GGGCTGGTGAAATTAAATTGGCAGTTATTTCCTAACTGGCATATCTTGGAGTAAAATTAATC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53584 62 - 101219884 GGGCTGGTGAAATTAAATTGGCAGTTATTTCCTTACTGGCATATCTTGGAGTAAAATTAATC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          176013 61 -    785044 GGGCTGGTGAAATT-AATTGACAGTTATTTCCTAACTGGCATATCTTGGAGTAAAATTAATC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           65067 62 -  10971483 GGGCTGGTGAAATTAAATTGGCAGTTATTTCCTAACTGGCATATCTTGGAGTAAAATTAATC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10921410 53 -  13128814 GGTCTGGTGAAATTAAATTGGAAGTTATTTC----CTGTCATATCTTGGAATAAAAT-----
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649795 53 +  14377064 GGGCTGGTGAAATTAAATTGGAAGGTATTTC----CTGTCATATCATAGAATAAAAT-----
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4118025 53 -   9889416 GGTCTGGTGAAATTAAATTGGAAGTTATTTC----CTGCCATATCTTGGAATAAAAT-----
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20746336 62 +  38779656 GAGCTGCTTAAATTAAATTGGAAGTGATTTTCTAATTGGCATATCCTGACATAAAGAAAATC
i otoGar3.GL873528             I 1 C 0
s mm10.chr16                    22689184 56 -  98207768 TAGATGATGAAATTAAG-----ACTGATTTCCTAGTTG-TATACCCTAGAATGAAAATAAAC
i mm10.chr16                   I 1 I 3
s canFam3.chr31                 28782547 50 -  39895921 GCGTTGGTTAAATTTAACTGGAAGTAA------------AATATCCTGGAATAAAAGCATTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6678514 60 +   6883506 AGGATATTTAAATTAAGTTGGAAATAATTTCCTAATCAGCATATCCTAGAATAAA--CAATC
i dasNov3.JH568778             C 0 I 1922
e micMur3.chr31                 30863954 163 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=800893.000000
s hg38.chr14_GL000009v2_random    166370 88 +    201709 TAATAAC------AGCTTTCATAAGAGAGCATAAG-----CTTAAAAGACAACATTTTTCATTCAACTTTACCAAACA--AAGTGCAAATTTAGGTGTCCA
s panTro5.chr9                  41856690 85 + 116767853 TAATAAC------AGCTTTCATAAGACAGC---TG-----TTTAAAAGACAACATTTTTCATTCAACTTTACCAAACA--AAGTGCAAATTTAGGTGTCCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817758 88 + 205426864 TAATAAC------AGCTTTCATAAGAGAGCATAAG-----CTTAAAAGACAACATTTTTCATTCAACTTTACCAAACA--AAGTGCAAATTTAGGTCTCCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          227248 84 +    245036 TAATAAC------AGCTTTCATAAGAGAGCATAAG-----CTTAAAAGACAACATTTTTCATTCAACTTTAC----CA--AAGTGCAAATTTAGGTCTCCA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103201 86 -  86207423 TAATAAC------AGCTCTCATAAGAGAGCATAAG-----CTTAAAAGACA--ATTTTTCATTCAACTTTACCAAACA--AAGTGCAAATTTAGGACTCCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204259916 88 - 204787373 TAATAAC------AGCTTTCATAAGCGAGCATAAG-----CTTAAAAGACAACATTTTTCATTCAACTTTACCAAACA--AAGTGCAAATTTAGGTCTGCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    159123 88 - 192460366 TAATAAC------AGCTTTCATAAGCGAGCATAAG-----CTTAAAAGACAACATTTTTCATTCAACTTTACCAAACA--AAGTGCAAATTTAGGTCTGCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178621 88 -  11645122 TAATAAC------AGCTTTCATAAGCGAGCATAAG-----CTTAAAAGACAACATTTTTCATTCAACTTTACCAAACA--AAGTGCAAATTTAGGTCTGCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163891 88 -   6739814 TAATAAC------AGCTTTCATAAGCGAGCATAAG-----CTTAAAAGACAACATTTTTCATTCAACTTTACCAAACA--AAGTGCAAATTTAGGTCTGCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53646 86 - 101219884 TAATAAC------AGCTTTCATAAGCGAGCATAAG-----CTTAAAAGACAACATTTTTAATTCAACTTTACCAAAC----AGTGCAAATTTAGGTCTGCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          176074 88 -    785044 TAATAAC------AGCTTTCATAAGCGAGCATAAG-----CTTAGAAGACAACATTTTTCATTCAACTTTACCAAACA--AAGTGCAAATTTAGGTCTCCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           65129 88 -  10971483 TAATAAC------AGCTTTCATGAGCGAGCATAAG-----CTTAAAAGACAACATTTTTCATTCAACTTTACCAAACA--AAGTGCAAATTTAGGTCTCCA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10921463 90 -  13128814 TAATAAC------AGCATTCATAAGAGAGTATCAG-----CTTAAAAGACAACACGTTTCATTCAACTTTACCAAACAGGAAGTGCAAATTTAGGTCTCCA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649848 90 +  14377064 TAATAAC------AGCTTTCATAAGAGAGTATCAG-----CTTAAAAGACAACACGTTTCATTCAGCTTTACCAAACAGGAAGTGCAAATTTAGGTCTCCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4118078 90 -   9889416 TAATAAC------AGCTTTCATAAGAGAGTATCAG-----CTTAAAAGACAACACGTTTCATTCAACTTTACCAAACAGGAAGTGCAAATTTAGGTCTCCA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20746398 86 +  38779656 CAATAAT------GACTTTCATAAAACAGTGTAAG-----TTTAAAAGAAAATACCTTTCATT----TCTACAAAATACTCAATGTAAATTTATGTTCTCT
i otoGar3.GL873528             C 0 I 1
s mm10.chr16                    22689243 87 -  98207768 TAATTAA------GGTCTTGAAAAGAGAGAGAGAGaataatttaaaataaaatagatttta---aattttatGAAATA-----TGAACAATTGACCGCACA
i mm10.chr16                   I 3 I 17
s canFam3.chr31                 28782597 70 -  39895921 ---------------------TAAGAGAGGTATAG-----Cttaaaaa-----tgtttttattaaattttatgaagtataaaatataaattCTGGTCTCCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6680496 87 +   6883506 TAATAACAATTTAAATTTTGAAGGACAATTGTAAG-----CTAAAAAAAAACAA------AACCAAA---ACGAAGCATAAAATGTAAATTCAGGTCTCCC
i dasNov3.JH568778             I 1922 C 0
e micMur3.chr31                 30863954 163 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=555977.000000
s hg38.chr14_GL000009v2_random    166458 44 +    201709 GTTGTGAAGTTTTGTTGTGTGTGGATTGTACAGTGAAGGTACCA--------
s panTro5.chr9                  41856775 44 + 116767853 GTTGTGAAGTTTGGTTGTGTGTGGATTGTACAGTGAAGGTACCA--------
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817846 44 + 205426864 GTTGCGAAGTTTGGTTGTGTGTGGATTGTACAGTGAAGGTACCA--------
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          227332 44 +    245036 GCTGTGAAGTTTGGTTGTGTGTGGATTGTACAGTGAAGGTACCA--------
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103287 44 -  86207423 GTTGTGAAGTTTGGTTGTGTGTGGATTGTACAGTGAAGGTACCA--------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204260004 44 - 204787373 TTTGTGAAATTTGGTTGTGTGTGGATTGTACAGTGAAGGTACCA--------
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    159211 44 - 192460366 TTTGTGAAATTTGGTTGTGTGTGGATTGTACAGTGAAGGTACCA--------
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178709 44 -  11645122 TTTGTGAAATTTGGTTGTGTGTGGATTGTACAGTGAAGGTACCA--------
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          163979 44 -   6739814 TTTGTGAAATTTGGTTGTGTGTGGATTGTACAGTGAAGGTACCA--------
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53732 44 - 101219884 TTTGTGAAATTTGGTTGTGTGTGGATTGTACAGTGAAGGTACCA--------
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          176162 44 -    785044 TTTGTGTAATTTGGTTGTGTGTGGATTGTACAGTGAAGGTACCA--------
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           65217 44 -  10971483 TTTGTGAAATTTGGTTTTGTGTGGATTGTACAGTGAAGGTACCA--------
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10921553 44 -  13128814 ATTGTGAAGTTTGGTTGTGTGTAGATTGTACAGTGAACGTACCA--------
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649938 44 +  14377064 ATTGTGAAGTTTGGTTGTGTGTAGATTGTACAGTGAAAATACCA--------
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4118168 44 -   9889416 ATTGTGAAGTTTGGTTGTGTGTAGATTGTACAGTGAAAGTACCG--------
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30864117 44 -  47401472 gttgtaaagtttgGTGGTGTGTTGATTGTATAGTGAATGTGCCA--------
i micMur3.chr31                I 163 C 0
s otoGar3.GL873528              20746485 44 +  38779656 GGTATGAAGTTTGGTAGCGTGCGGACCGTCCAGTGAATGTGCCA--------
i otoGar3.GL873528             I 1 C 0
s mm10.chr16                    22689347 44 -  98207768 AATATGAAATGTGATATTGTGTAAATTCTAGAGCAAATGTGCTA--------
i mm10.chr16                   I 17 I 7604
s canFam3.chr31                 28782667 41 -  39895921 GTTTTGAAGTTTGATAGTGTT---ATTGTACAGTGAATGTGCCA--------
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6680583 52 +   6883506 ATTTTGATGTTTGGTAATATGTGGATTGTACAGTGAACTGAACATGTTGATG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=822507.000000
s hg38.chr14_GL000009v2_random    166502 71 +    201709 GTGGACAACAGTTGCTCATCAAGCAAGTTTATACAAAAGCTTTCGGATAAGTCCAACTCTAGATAAAATTC
s panTro5.chr9                  41856819 71 + 116767853 GTGGACAACAGTTGCTCATCTAGCAAGTTTATACAAAAGCTTTCGGACAAGTCCAACTCTAGATAAAATTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817890 71 + 205426864 GTGGACAACAGTTGCTCCTCAAGCAAGTTTATACAAAAGCTTTGGGAGAAGTCCAACTCTAGATAAAATTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          227376 71 +    245036 GTGGACAACAGTTGCTCCTCAAGCAAGTTTATACAAAAGCTTTGGGAGAAGTCCAACTCTAGATAAAATTC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103331 71 -  86207423 GTGGACAACAGTTGCTCATCAAGCAAGTTTATACAAAAGCTTTGGGGCAAGTCCAACTCTAGATAAAATTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204260048 71 - 204787373 ATGGACGATAGTTGCTCATCAAGTAAGTTTATACAAAAGCTTTGGGACAAGTCCAACTCTAGATAAAATGG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    159255 71 - 192460366 ATGGACGATAGTTGCTCATCAAGTAAGTTTATACAAAAGCTTTGGGACAAGTCCAACTCTAGATAAAATGG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178753 71 -  11645122 ATGGACGATAGTTGCTCATCAAGTAAGTTTATACAAAAGCTTTGGGACAAGTCCAGCTCTAGATAAAATGG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          164023 71 -   6739814 ATGGACAATAGTTGCTCATCAAGCAAGTTTATACAAAAGCTTTGGGACAAGTCCAACTCTAGATAAAATGG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53776 71 - 101219884 ATGGACAACAGTTGCTCATCAAGCAAGTTCATACAAAAGCTTTGGGACAAGTCCAACTCTAGATAAAATGG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          176206 71 -    785044 ATGGACAATAGTTGCTCATCAAGCAAGTTTATACAAAAGCTTTGGGACAAGTCCAACTCTAGATAAAATGG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           65261 71 -  10971483 ATGGACAATAGTTGCTCATCAAGCAAGTTTATACAAAAACTTTGGGACAAGTCCAACTCTAGATAAAATGG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10921597 71 -  13128814 ATGGACAACAGTTGCTCATCAAGTAAGTTTATACAAAAGCATTGGGACAAGTCCAACTCTAGATAAAATTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7649982 71 +  14377064 ATGGACAACAGTTGCTCATCAAGCAAGTTTATACAAAAGCATTGGGACAAGTCCAACTCTAGATAAAATTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4118212 71 -   9889416 ATGGACAACAGTTGCTCATCAAGTAAGTTTATATAAAAGCATTGGGACAAGTCCAACTCTAGATAAAATTA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30864161 55 -  47401472 GTGGACAATAGTTGCTTATCAAGCAAGTTTATGCAAAAGCTTTGGGACAAGTCTG----------------
i micMur3.chr31                C 0 I 1
s otoGar3.GL873528              20746529 71 +  38779656 GTGGACGACAGTTGCGTATCAAGAAAGTTTATATGAAAGCTTTGAGATGAGTCCAGCTCTCAGGAAAGTTG
i otoGar3.GL873528             C 0 I 1
s canFam3.chr31                 28782708 71 -  39895921 ATGGACAACCATTGCTTATTAAGCAAGTTTATGCAAAAGCTTTGGGACAGGTCCAGCTCTAGGTAACGTTG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6680635 51 +   6883506 ATGGACAATAATTTCTTATCAAGGATGTTTGATAAATGGC--------------------AGGTAATTTTG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=-2428.000000
s hg38.chr14_GL000009v2_random    166573 1 +    201709 -G
s panTro5.chr9                  41856890 1 + 116767853 -A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817961 1 + 205426864 -T
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          227447 1 +    245036 -T
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103402 1 -  86207423 -T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204260119 1 - 204787373 -T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    159326 1 - 192460366 -T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178824 1 -  11645122 -T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          164094 1 -   6739814 -T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53847 1 - 101219884 -T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          176277 1 -    785044 -T
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           65332 1 -  10971483 -T
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10921668 1 -  13128814 -T
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7650053 1 +  14377064 -T
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4118283 1 -   9889416 -T
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28782779 1 -  39895921 -T
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6680686 1 +   6883506 A-
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30864216 1 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20746600 1 +  38779656 I

a score=539633.000000
s hg38.chr14_GL000009v2_random    166574 42 +    201709 AAAGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTC
s panTro5.chr9                  41856891 42 + 116767853 AAAGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77817962 42 + 205426864 AACGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          227448 42 +    245036 AACGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103403 42 -  86207423 AAAGGATTTCGTGCCTGTGTTCAGAGTTACTTTTTCTCTCTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204260120 42 - 204787373 AAAGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    159327 42 - 192460366 AAAGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178825 42 -  11645122 AAAGTATTTCATGCTTGTGTTCAGAGTTTATTTTTCTCTCTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          164095 42 -   6739814 AAAGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53848 42 - 101219884 AAAGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          176278 42 -    785044 AAAGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           65333 42 -  10971483 AAAGTATTTCATGCTTGTGTTCAGAGTTTCTTTTTCTCTCTC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10921669 42 -  13128814 AAAGCACATTATGCTTGTGTTCAGAGTTCCTTTCTCTCCCTC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7650054 42 +  14377064 AAAGCACTTTATGCTTGTGTTCAGAGTTCCTTTCCCTCCCTC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4118284 42 -   9889416 AAAGCACTTTACGTTTGTGTTCAGAGTTCCTTTCTCTCCCTC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30864217 42 -  47401472 GAAGCATTTGACACTTGTGTTCAGAGTTCTTTTCTCTCTCTC
i micMur3.chr31                I 1 C 0
s otoGar3.GL873528              20746601 42 +  38779656 AAAGTATTTGACATTTTTGTTCAGAGTTCCTTTCTATCTCTC
i otoGar3.GL873528             I 1 C 0
s canFam3.chr31                 28782780 42 -  39895921 AAAATATTTGATGCTTGCATTCAGAGTTTCTTTCTCTGTTTC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6680687 42 +   6883506 AAAATATTTGATGCTTGTGTTGAGAGTTTCTTCCTTTCCCTC
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=2397922.000000
s hg38.chr14_GL000009v2_random    166616 230 +    201709 CAAGGTAACCCACATATCAAAAGACAT------------------ATGGGTTG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGTTGAGAAGTGTGCCATGTATAAGCATACTTCACTAGCTTGAATTTTCTGTTAGTCTCACAGGCAACAATTACAATCCTGTATGTTTTTCTATCTCCACACACTCCTGAACATAGAAAGACCAAGTAACATCCCTGTTTAAGATGTGTACAGGTTACAAGACATGTCTAAA
s panTro5.chr9                  41856933 230 + 116767853 CAAGGTAACCCACATATCAAAAGACAT------------------ATGGGTTG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGAGAAGTGTGCCATGCATAAACATACTTCACTAGGTTGAATTTTCTGTTAGTCTCACAGGCAACAATTACAATCCTGTATGATTTTCTATCTCCACACACTCCTGAGCATAGAAAGACCAAGTAACATCCCTGGTTAAGATGTGTACAGGTTACAAGATATGTCTAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77818004 230 + 205426864 CAAGGTAACCCACATATCAAAAGACAT------------------ATGGGTTG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGAGAAGTGTGCCATGCATAAACATACTTCACTAGCTTGAATTTTCTATTAGTCTCACAGGCAACAATTACAATCCTGTATGTTTTTCTATCTCCACACACTCCTGTACATAGAAAGACCAAGTAACATCCCTGGTTAAGATATGTACAGGTTACAAGACATGTCTAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          227490 230 +    245036 CAAGGTAACCCACATATCAAAAGACAT------------------ATGGGTTG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGAGAAGTGTGCCATGCATAAACATACTTCACTAGCTTGAATTTTCTATTAGTCTCACAGGCAACAATTACAATCCTGTATGTTTTTCTATCTCCACACACTCCTGTACATAGAAAGACCAAGTAACATCCCTGGTTAAGATATGTACAGGTTACAAGACATGTCTAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103445 230 -  86207423 CAAGGTAACCCACATATCAAAAGACAT------------------ATGGGTTG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGAGAAGTGTGCCATGCATAAACATACTTCACTAGCTTGAATTTTCTATTAGTCTCACAGGCAACAATTACAATCCTGTATGTTGTTCTATCTCCACACACTCCTGTACATAGAAAGATCAAGTAACATCCCTGGTTAAGATGTGTACAGGTTACAAGACATGTCTAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204260162 229 - 204787373 CAAGATAACCCACATCTCAAAAGACAT------------------ATGGGTTG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGGAAAACGTGCCGCACATAAACATACTTTACTAGCTTGCA-TTTCTGTTGGTCTCACAGGCAACAATTGCAATCCTGTATGTTGTTCTATCGCCACACACTCCTGTTCATAGAAAGACCAAGTACCATACCTGGGTAAGATGTGTGCAGGTCACAAGATATGTCTAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    159369 229 - 192460366 CAAGATAACCCACATCTCAAAAGACAT------------------ATGGGTTG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGGAAAACGTGCCGCACATAAACATACTTTACTAGCTTGCA-TTTCTGTTGGTCTCACAGGCAACAATTGCAATCCTGTATGTTGTTCTATCGCCACACACTCCTGTTCATAGAAAGACCAAGTACCATACCTGGGTAAGATGTGTGCAGGTCACAAGATATGTCTAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          178867 230 -  11645122 CAAGATAACCCACATCTCAAAAGACAT------------------ATGGGTTG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGGGAAACGTGCCGCACATAAACATACTTTACTAGCTTGCATTTTCTGTTGGTCTCACAGGCAACAATTGCAATCCTGTATGTTGTTCTATCACCACACACTCCTGTTCATAGAAAGACCAAGTACCATACCTGGGTAAGATGTGTGCAGGTCACAAGATATGTCTAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          164137 230 -   6739814 CAAGATAACCCACATCTCAAAAGACAT------------------ATGGGTTG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGGGAAACGTGCCGCGCATAAACATACTTCACTAGCTTGCATTTTCTGTTGGTCTCACAGGCAACAATTGCAATCCTGTATGTTGTTCTATCGCCACACACTCCTGTTCATAGAAAGACCAAGTACCATACCTGGGTAAGATGTGTGCAGGTCACAAGATATGTCTAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    53890 230 - 101219884 CAAGATAACCCACATCTCAAAAGACAT------------------ATGGGTTG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGGGAAACGTGCCGCACATAAACATACTTCACTAGCTTGCATTTTCTGTTGGTCTCAAAGGCAACAATTGCAATCCTGTATGTTGTTCTATCGCCACACACTCCTGTTCATAGAAAGACCAAGTACCACACCTGGGTAAGATGTGTGCAGGTCACAAGATATGTCTAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          176320 230 -    785044 CAAGATAACCCACATCTCAAAAGACAT------------------ATGGGTTG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGGGAAACGTGCCGCGCATAAACATACTTCACTAGCTTGCATTTTCTGTTGGTCTCACAGGCAACAATTGCAATCCTGTATGTTGTTCTATGGCCACACACTCCTGTTCATAGAAAGACCAAGTACCATACCTGGGTAAGATGTGTGCAGGTCACAAGATATGTCTAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           65375 230 -  10971483 CAAGGTAACCCACATCTCAAAAGACAT------------------ATGGGTTG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGGGAAACGTGCCGTGCATAAACATACTTCACTAGCTTGCATTTTCTGTTGGTCTCACAGGCAACAATTGCAATCCTGTATGTTGTTCTATCGCCACACACTCCTGTTCATAGAAAGACCAAGTACCATACCTGGGTAAGATGTGCACAGGTCACAAGATATGTCTAAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10921711 228 -  13128814 CAAG-TAACGCACATATCAAAGAACAT------------------ATGGGTGG---------------------------TGGGC---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGGGAAACGTGCTATACATAAACATGCTTCACTAGCTTGAATTTTCTATTAGTCTCACAGGCAACAGTTGCAACCCTGCATATTGTTCTATCTCCACACACTCCTGAACATAGAAAGACCAAGTAACATACCTGGTTAAGGTGTGTACAGGTTATAAGACATGTCT-AA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7650096 229 +  14377064 TAAG-TAACCCACATATCGAAGAACAT------------------ATGGGTGG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTGGTGGGAAATGTGCTATACATAAACATACTTCACTAGCTTGAATTTTCTATTAGCCTCACAGGCAACAGTTGCAACTCTGCATGTTGTTCTATCTCCACACACTCCTGAACATAGAAAGACCAAGTAACACACCTGGTTAAGGTGTGTACAGGTTATAAGACAGGTCTAAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4118326 229 -   9889416 CAAG-TAACCCACTTATCAAAGAACAT------------------ATGGGTGG---------------------------TGGGT---------AGAACTTCCTAAAA-----------------------------------------TTGCTCATGGGAAATGTGCTGTACATAAACATACTTCACTAGCTTGAATTTTCTATTAGTCTCACAGGCAATAGTTTCAACCCTGCATGTTGTTCTATCTCCACACACTCCTGAACATAGAAAGACCAAGTAATATACCTGGTCAAGGTGTGTACAGGTTATAAGACATGTCTAAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30864259 230 -  47401472 AGAGGTAACTCACATGCCAAAAGACAT------------------ATGGGCTG---------------------------TGGGT---------AGAGATTCCTAAAA-----------------------------------------TTGCTGGTGGGAAATAGGCCATGCATAGGCATACTTCAATGGCCCAAATTTTACATTAGTCTTGCAGGAAATAATTGCAATCCTGTAGGTTATTAAATCTTCACACACTCTTGTACATAGCAAGACCAAGGAACATATCTGGTCAAGGTATGTCCAGGTTATAGGACATGTCTAAG
i micMur3.chr31                C 0 C 0
s canFam3.chr31                 28782822 228 -  39895921 AGACGTAACCCACATATCAACAGATAA------------------ATGAGGTG---------------------------TGGTC---------AGAGCTTCCCAAAA-----------------------------------------TTGCTGGTGGGAAGTGTTTCATGCATAAGCACACCTCAGTAGCCTGCATCTCCCATGAACTTCTTGGGCAAAAACTATAACTGTGCAGTTCATTCTGTTTCTACCCACTCTTATACATAGCAAGACTAAGGAACACAGTTGGCTAAGATGTGTCTAGTTTACAAGATATGTTTA--
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6680729 319 +   6883506 --AGATAACCCATATATTAAGATACATggtgagcaagtgtagctcagtggttgagcgcatgcttcccatttatgcagtcctgggttcaatccccagaatctcctaaaataaaTATATATAGATTATATATATATATAAGCTTCCTAACCTTATTGGTGGGAAATGTGCCATGCTTAAGCAAACCTCACTCGCCTTCATTTCCTTTTATTTCTATGGGCAATGATTGCGGTGTTGCAGACCATTCTCTTTTCTTATACCCCTGTACATTACAAGACCAGGAAACATACTAGATTAAGAT----CCAGGTTAACAGACATGTCTAAG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20746643   0 +  38779656 C

a score=1871025.000000
s hg38.chr14_GL000009v2_random    166846 183 +    201709 TATATTCAC--CAAGAGGTTTATTATTTTCACAGTGGC-------------ATTCACTAAATCAGTTGTCAGTGTAGCATTACTcaaggaataagcaggg----------tctttaatttatcaa-ag--------tttggagtgcaccccaagttggatcactgaagcacataactatagataagatcactcaaaagca--caaaTCCAGGTAATAAA
s panTro5.chr9                  41857163 183 + 116767853 TATATTCAC--CAAGAGGTTTattattttcacagtggc-------------attcactaaatcagttgttagtgtagcaacactcaaggaataagcaggg----------tctttaatttatcaa-ag--------tttggagtccaccccaagttggatcactgaagcacataactatagataaggtcactgaaaagca--caaaTCCAGGTTATAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77818234 183 + 205426864 CATATTCAC--CAAGAGGTTTATTATTTTCACAGTGGC-------------ATTCACTAAATCAGTTGTCAGTGTAGCAGTACTCAAGGAATAAGCAGGG----------TCTTTACTTTATCGA-AG--------TTTGGAGTCCACTCCAAGTTAGATCACTGAAACACATAACTATAGATAAGGTCACTCAAAAGCA--CAAATCCAGGTTATAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          227720 178 +    245036 TGTATTCAC--CAAGAGGTTTATTATTTTCACAGTGGC-------------ATTCACTAAATCAGTTGTCAGTGTAGCAATACTCAAGGAATAAGCAGGG----------TC-----TTTATCGA-AG--------TTTGGAGTCCACTCCAAGTTAGATCACTGAAACACATAACTATAGATAAGGTCACTCAAAAGCA--CAAATCCAGGTTATAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103675 178 -  86207423 CATATTCAC--CAAGAGGTTTATTATTTTCACAGTGGC-------------ATTCACTAAATCCGTTGTCAGTGCAGCAATACTCAAGTAATAAGCAGGG----------TC-----TTTATCAA-AG--------TTTGGAGTCAACCCCAAGTTAGATCACTGAAGCACATAACTATAGATAAGGTCACTCAAAAGCA--CAAATCCAGGTTATAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204260391 185 - 204787373 TATGTTCAC--CAAGAGGTTTATTATTTTCACAGTGGC-------------ATTCACTACATCAGTTATCGATgtaacaataatcaaggaataagcagggaat---aaactc-----tttatcaa-ag--------tttggagtcaatcccaatttagatcactgaagcacataactatagataaggtcactcaaaagca--caaaTCTAGGTTATAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    159598 185 - 192460366 TATGTTCAC--CAAGAGGTTTATTATTTTCACAGTGGC-------------ATTCACTACATCAGTTATCGATgtaacaataatcaaggaataagcagggaat---aaactc-----tttatcaa-ag--------tttggagtcaatcccaatttagatcactgaagcacataactatagataaggtcactcaaaagca--caaaTCTAGGTTATAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          179097 185 -  11645122 TATGTTCAC--CAAGAGGTTTATTATTTTCACAGTGGC-------------ATTCACTACATCAGTTATCGATgtaacaataatcaaggaataagcagggaat---aaactc-----tttatcaa-ag--------tttggagtcaatcccaagttagatcactgaagcacattactatagataaggtcactcaaaagca--caaaTCTAGGTTATAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          164367 185 -   6739814 TATGTTCAC--CAAGAGGTTTATTATTTTCACAGTAGC-------------ATTCACTACATCAGTTATCAATgtaacaataatcaaggaataagcagggaat---aaactc-----tttatcaa-ag--------tttggagtcaactccaagttagatcactgaagcacataactatagataaggtcactcaaaagca--caaaTCCAGGTTATAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    54120 185 - 101219884 TATGTTCAC--CAAGAGGTTTATTATTTTCACAGTGGC-------------ATTCACTACATCAGTTATCAATgtaacaataatcaaggaataagcagggaat---aaactc-----tttatcaa-ag--------tttggagtcaaccccaagttagatcactgaagcacataactatagataaggtcactcaaaagga--caaaTCCAGGTTATAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          176550 185 -    785044 TATGTTCAC--CAAGAGGTTTATTATTTTCACAGTGGC-------------ATTCACTACATCAGTTATTGATgtaacaataatcaaggaataagcagggaat---aaactc-----tttatcaa-ag--------tttggagtcaaccccaagttagatcactgaagcacataactatagataaggtcactcaaaagca--caaaTATAGGTTATAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           65605 178 -  10971483 TATGTTCAC--CAAGAGGTTTATTATTTTCACAGTGGC-------------ATTCACTACATCAGTTATTAATGTAACAATAATCAAGGactaaacaggg----------tc-----tttatcaa-ag--------tttggagtcaaccccaggttagatcactgaagcacataactatagataaggtcactcaaaagca--caaaTCCAGGTTATAAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10921939 183 -  13128814 TAGACTCAT--CAAGAGGTTTATTGTTTTCACTGTGGC-------------ATTCAGTAAATCAGTTATCAATGTAAC---AATCAGGGAATAAGCAGGGTCT---TAATTC--TACTTTGTCAA-AG--------TTTGGAGTCAATCCCAAGTTACATCACTGAAACGCATAACTATAGATAATGTCACTCAAAGGCA--CAAATC--AGTTATAAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7650325 186 +  14377064 TAGATTTAT--CAAGAGGTTTATAATTTTCACTGTGGC-------------ATTCAGTAAATTAGTTATCAGTGCAGCAATAATCAAGTAATAAGCAGGGTCT---TAATTC--TACTTTGTCAA-AG--------TTTGGAGTCAATCCCAAGTTATATCACTGAAACACATAACTATACATAATGTCACTCAAAGGCA--CAAATC--AGTTATAAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4118555 186 -   9889416 TAGATTCAT--CAGGAGGTTTATTATTTTCACTGTGAC-------------ATTCAGTAGATCAGTTATCtgtgtagcaataatcaaggaataagcagggtct---taactc--tactttgtcaa-ag--------tttggagtcaatcccaagttatatcactgaaacacataactatagataatgtcactcaaaggca--caaaTC--AGTTATAAG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30864489 189 -  47401472 TATGTTCAT--CA--AGGTCTGTTAGGCTCACTGTGGC-------------ATTCAGTAAACCAGTTATCAGCATAACGATAATTAAGGAATAAGCCCGGTATTAAAAACTC--TACTTTATCAA-AG--------TTTAGAGTCAATCCCAAGTTAGATGATTGGAGCACGTAATTATAGATAAAGTCACTCAAAGGAA--CAAAACCAGGTTATAAA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20746643 189 +  38779656 TGCATTCTT--CAAGAGGTCCATTATGCTCACTGGGAC-------------CTGCATTACATTAATTAGCAGTGCAGCAATAGTCAAAGAACAAGAACAATATTAACAACTC--TACTTTGACAAGGG--------TTTGGGGTCAATCTCAAGCTAAATCATTGAAATAC-TA--TATAGATAAGGTCACTCAAAGGCA--AAAAACCAGGTTATAAA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28783050 178 -  39895921 ----TTTATTACAGGAAGTTAATTATTCTTACTGTGAA-------------ATTCAGTAAATCA-TTACTGGTATAACAATAATCAAGAAATAAGCAAAGTCTTAACAACTC------------C-AC--------CTTAGGGTAAACCACAAGTTAGTTCACTGGAACATATAGCAATAAATAAGAGCACTTCAAGGCA--CAAGACCAATTTATAAA
i canFam3.chr31                C 0 I 343
s dasNov3.JH568778               6681048 209 +   6883506 --TATTAAG---AAGAAGTCTGTAAATATCACTGTGGTATCTATGTAACTGATTCAGTA-ATAAGTTATCACTATAGTAATACTCATGAAAGAAGCAGAGCCTTAACAATTC--TTCCCTATCAA-GGGAATAACAGTTGGGGTCAACTCCATGTTAGAATAATGGAGTACATGACTATAGATAAGGGCA-TCTATGGCACCCAAAACCAGTTTATAAA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=1612883.000000
s hg38.chr14_GL000009v2_random    167029 138 +    201709 TATTCACTAGTAGTTTATATGCATTTAGCAATTTGAATGCTGGGAAGTGTAGCCCAGAAAATCAATCGACATGGAGCTATTAAAGAGGCATTCATGGCACCTGCAC---TTTGAATCTCTT--CAGACTCAGGTTAAACAGGA
s panTro5.chr9                  41857346 138 + 116767853 TATTCAGTAGTAGTTTATATGCATTTAGCAATTTGAATGCTGGGAAGTATAGCCCAGAAAATCAATCGACATTGAACTATTAAAGAGGCATTCATGGCACCTGCAC---TTTGAATCTCTT--CAGACTCAGGTTAAACAGGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77818417 138 + 205426864 TATTCAGTAGTAATTTATATGCATTTAGCAATTTGAATGCTGGGAAGTGTAGCCCAGAAAATCAATCGACATGGAACTATTAAAGAGGCATGTATGGCACCTGTAC---TTTGAATCTCTT--CAGACTCAGGTTAAACAGGA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          227898 138 +    245036 TATTCAGTAGTAATTTATATGCATTTAGCAATTTGAATGCTGGGAAGTGTAGCCCAGAAAATCAATCGACATGGAACTATTAAAGAGGCATGTATGGCACCTGTAC---TTTGAATCTCTT--CAGACTCAGGTTAAACAGGA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103853 138 -  86207423 TATTCAGTTGTCGTTTATATGCATTTAGCAATTTGAATGCTGGGAATTGTAGCCCAGAAAATCAATCGACATGGAACTATTGAAGAGGCATGCATGGCACCTGCAC---TTTGAATCTCTT--CAGACTCAGGTTAAACAGGA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204260576 138 - 204787373 TATTCAGTAGTATTTTATATGCATTTAGCAATTTGAGTGCTGGGAAGTGTAGCCCAGAAAATCAACAGACATGGAACTATTAAAGAGGCGTGCATGGCACCTGCAC---TTTGAATCTCTT--CAAACTCAGGTTAAACAGGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    159783 138 - 192460366 TATTCAGTAGTATTTTATATGCATTTAGCAATTTGAGTGCTGGGAAGTGTAGCCCAGAAAATCAACAGACATGGAACTATTAAAGAGGCGTGCATGGCACCTGCAC---TTTGAATCTCTT--CAAACTCAGGTTAAACAGGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          179282 138 -  11645122 TATTCAGTAGTATTTTATATGCATTTAGCAATTTGAGTGCTGGGAAGTGTAGCCCAGAAAATCAACAGACATGGAACTATTAAAGAGGCGTGCATGGCACCTGCAC---TTTGAATCTCTT--CAAAGTCAGGTTAAACAGGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          164552 138 -   6739814 TATTCAGTAGTATTTTATATGCATTTAGCAATTTGAGTGCTGGGAAGTGTAGCCCAGAAAATCAACAGACATGGAACTATTAAAGAGGCGTGCATGGCACCTGCAC---TTTGAATCTCTT--CAAACTCAGGTTAAACAGGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    54305 138 - 101219884 TATTCAGTAGTATTTTATATGCATTTAGAAATTTGAGTGCTGGAAAGTGTAGCCCAGAAAATCAACAGACATGGAACTATTAAAGAGGCGTGCATGGCACCTGCAC---TTTGAATCTCTT--CAAACTCAGGTTAAACAGGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          176735 138 -    785044 TATTCAGTAGTATTTTATATGCATTTAGCAATTTGAGTGCTGGGAAGTGTAGCCCAGAAAATCAACAGACATGGAACTCTTAAAGAGGCGTGCATGGCGCCTGCAC---TTTGAATCTCTT--CAAACTCAGGTTAAACAGGA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           65783 138 -  10971483 TATTCAGTAGTATTTTATATGCATTTAGCAATTTGAGTGCTGGGAAGTGTAACCCAGAAAATCAACAGACATGGAACTATTAAAGAGGCATGCATAGCACCTGCAC---TTTGAATCTCTT--CAAACTCAGGTTAAACAGGA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10922122 139 -  13128814 TATTTAGTAGTAGTTTACAGGCATTTAGCAATTTGAGTGTTGGAAAGGGTAGCCCAGAAAATCAATAGACATGGAACTATTAAAGAGCCATGCACGGCACCTGCAC--TTTTGAATCTCTT--CAGGCTCAGGTTAAACATGA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7650511 138 +  14377064 TATTCAGTAGTATTTTATAGGCATTTAGCAATTTGAATGTTGGAAAGGGTAGCCCAGAAAATCAATGGACATGAAACTATTAAAGAGCTGTGCATGGCATCTGCAC---TTTGAATCTCTT--CAGGCTCAGGCTAAACATGA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4118741 138 -   9889416 TATTCAGTAGTATTTTATAGGCATTTAGCAATTTGAGTGTTGGAAAGCATAGCCCAGAATATCAATAGACATGGAACTATTAAAGAGCCATGCACGGCACCTGCAC---GTTGAATCTCTT--CAGGCTCAGGTTAAACATGA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30864678 134 -  47401472 TATTCACTGATATTTTTTATACATTTAGCAGCTTGAGCAGTAGAAGATTCAGGCCAGAAAATCGGTAGATATGGAGCT----AAGAGGCATGCATGGGACTTTCAC---TTTGAATTTAAT--CAGACTCAGGTTAAGCAGGA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20746832 132 +  38779656 TATTTACTGAT-TTTTTTATACACTTAGCAACCTGAACAATGGAAGGTTCAGCCCAGAAAACCAATAGATAAGGCGCT----AAGAGGTATGT-TAGGACTTGTAC---TTTGAATTTCTT--TAGACTAAGGCTAAGCAGGA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28783571 138 -  39895921 TATTCAGTGGTATTTCCTATACATTTAGCGGTCCTAGCTGTGGAAGGTACAGCCCAGAAAATCATTAAATTTGGGATTGTTGAAGAGGCATGAATAGCAATAGCAC---ATTGGATGTGTT--CAGACTCAGGTTAAGCAGGA
i canFam3.chr31                I 343 I 7
s dasNov3.JH568778               6681257 142 +   6883506 TATTCAGCGGTATTTTCTATA-ATTTAGCAGCCTGAGCAGTGGAAGTTGTAGCCCAGAAAATTAGTAGTTATGAAACTATTGTAGAGGCACAAACAGCACCTGCAAATATTTGAATCCATTTGCTAGCTCAGTTTAATCAGGA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=63074.000000
s hg38.chr14_GL000009v2_random    167167 7 +    201709 GACACGG
s panTro5.chr9                  41857484 7 + 116767853 GACACAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77818555 7 + 205426864 GACACAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          228036 7 +    245036 GACACAG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103991 7 -  86207423 GACACAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204260714 7 - 204787373 GACACGG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    159921 7 - 192460366 GACACGG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          179420 7 -  11645122 GACACGG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          164690 7 -   6739814 GACACGG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    54443 7 - 101219884 GACACGG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          176873 7 -    785044 GACACGG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           65921 7 -  10971483 GACACAG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10922261 7 -  13128814 GACAAGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7650649 7 +  14377064 GACAAGG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4118879 7 -   9889416 GACAAGG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30864812 7 -  47401472 GTCAAGG
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20746964 7 +  38779656 GTCCAGG
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6681399 4 +   6883506 ---AGGG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28783709 7 -  39895921 I

a score=860085.000000
s hg38.chr14_GL000009v2_random    167174 79 +    201709 TAGCTCATGTATAGTGCAAAAACCCTTCCTCTTTCCCTTTTTATCTATGAACCTGCCCTTTTCAATGTTATCTAGATGC
s panTro5.chr9                  41857491 79 + 116767853 TAGCTCATGTATACTGCAAAAACCCTTCCTCTTTCCCTTTTTATCTATGAACCTGCCCTTTTCAATGTTATCTAGATGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77818562 79 + 205426864 TAGCTCATGTATACTGCAATAACCCTTCCTCATTGCCTTTTTATCTATGAACCTGCCCTTTTCAATGTTATCTAGATGC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          228043 79 +    245036 TAGCTCATGTATACTGCAATAACCCTTCCTCATTGCCTTTTTATCTATGAACCTGCCCTTTTCAATGTTATCTAGATGC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42103998 79 -  86207423 TAGCTCATGTATCCTGCAATAACCCTTCCTCATTGCCTTTTTATCTACGAACCTGCCCTTTTCAATGTTATCTATATGC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204260721 79 - 204787373 TGTCTCATGTATACCGCAATAACCCTTCCTCATTGCCTTTTTATCTACAAACTCACCCTTTTCAGTGTTATCTAGATGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    159928 79 - 192460366 TGTCTCATGTATACCGCAATAACCCTTCCTCATTGCCTTTTTATCTACAAACTCACCCTTTTCAGTGTTATCTAGATGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          179427 79 -  11645122 TGTCTCATGTATACCGCAATAACCCTTCCTCATTGCCTTTTTATCTACAAACTCACCCTTTTCAGTGTTATCTAGATGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          164697 79 -   6739814 TGGCTCATGTATCCCGCAATAACCCTTCCTCATTGCCTTTTTATCTACAAACTCACCCTTTTCAGTGTTATCTAGATGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    54450 79 - 101219884 TGGCTCATGTATCCCACAATAACCCTTCCTCATTGCCTTTTTATCTACAAACTCACCCTTTTCAGTGTTATCTAGATGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          176880 79 -    785044 TGGCTCATGTATCCTGCAATAACCCTTCCTCATTGCCTTTTTATCTACAAACTCACCCTTTTCAGTGTTATCTAGATGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           65928 79 -  10971483 TGGCTCATGTATCCCGCAATAACCCTTCCTCATTGCCTTGTTATCTACAAACTCACCCTTTTCAGTGTTATCTAGATGT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10922268 79 -  13128814 TAGCCCATGTATACTGTAGTAACCCTTCCTCATTGCCTTTTTATCTATGAACTTGCCCTTTACAGTGTTATCTAGATGT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7650656 79 +  14377064 TATCCCATGTATACTGCAATAACCCTTCCTCATTGCCTTTTTGTCCATGAACTTGCCCTTTATAATGTTATCTAGATGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4118886 79 -   9889416 TAGCCCATGTATACTGCAATAACCCTTCCTCATTGCCTTTTTATCTATGACCTTGCCCTTTACAATATTATCTAGATGT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30864819 79 -  47401472 TGGCCTGCACATTCTCTAACAACCCTTTGTCATTGACTTTTCATCTATGAACTCACCCTTTTCAATGTTATACAGATGC
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20746971 78 +  38779656 TGGCCTGGGTATACGCTAACAACCCTTAGTCATTGCCTTTTTATATATAAACTCACCC-TTTCACTGTTGTGCAGATGT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28783716 79 -  39895921 TAGTCCATTTATCCTGCACCAACATTTCATCATTGCCTTTTTATCTATGGATTCTCTCTTTTCAATGTTCTCTACATGG
i canFam3.chr31                I 7 C 0
s dasNov3.JH568778               6681403 73 +   6883506 TAGCCTATGTGC-CTGAACGATGCCTCCACCATTGCTTTCACATCTATGGACT-----TTTTCACTGATCCCTACATAG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=1995305.000000
s hg38.chr14_GL000009v2_random    167253 211 +    201709 CTGAAGGTATGAATACCCT------------TGATCTTGGT-AAAAAATGGTACCATC-CATCAGCAAA--ATCTCACTGATCAGTGTCTATGTTACCTCACTG-AGTTAGCCTTTTGTGTTGTTGTGGCCCAGAATGACAATGTTGACACAATCCAAACCAGTAGTTGGAAAGTTAATGTTGGATGCGTCTTTGACAATTGATGGAATGACCTGAAATCAAATGTGA
s panPan2.chr3                  77818641 211 + 205426864 CTGAAGGTATGAATACCCT------------TGATCTTGGT-AAAAAATGGTACCACC-AGTTAGCAAA--ATCTCACTGATCAGTGTCTATGTTACCTCACTG-AGTTAGCCTTTTGTGTTGTCATGGCCCAGGATAACAATGTTGACACAATCCAAACCAGTAGTTGGAAAGTTAATGTTGGATGCGTCCTTGACAATTGATGGAATGACCTGAACTCAAATGTGA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          228122 211 +    245036 CTGAAGGTATGAATACCCT------------TGATCTTGGT-AAAAAATGGTACCACC-AGTCAGCAAA--ATCTCACTGATCAGTGTCTATTTTACCTCACTG-AGTTAGCCTTTTGTGTTGTCATGGCCGAGGATAACAATGTTGACACAATCCAAACCAGTAGTTGGAAAGTTAATGTTGGATGCGTCTTTGACAATTGATGGAATGACCTGAAATCAAATGTGA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42104077 207 -  86207423 CTGAAGGTATGAATACCCT------------TGATCTTGGT-AAAAAATGGTACCACC-CGTCAGCAAA--ATCTCACTGATCGGTGTC--TGTTACCTCACCG-AGTTAGCCTTTTGTGTTGTTGTGGCCCAGGATGACAATGTTGACACAATCCAAACCAGTAATTGGAAAGTTAATGTTGGATGCGTCTTTGACAATTGATGGAAT--CCTGAAATCAAATGTGA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204260800 211 - 204787373 CTGAAGGTATGAATACCCT------------TGATCTTGGT-AAAAAATGGTGCCACC-CCTCAGCAAA--ATGTCACCGATTGGTGTCTATGTCACCTCACTG-AGTTAGCCTTTTGTGTTGTTGTGGCCCCGAATGACAATGTTGACATAATCCAAACCAGTAGTTGGAAAGTTAATGTTGGATGCTTCTGTGACAGTTGATGGAATGACCTGAAATCAAATGTGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    160007 211 - 192460366 CTGAAGGTATGAATACCCT------------TGATCTTGGT-AAAAAATGGTGCCACC-CCTCAGCAAA--ATGTCACCGATTGGTGTCTATGTCACCTCACTG-AGTTAGCCTTTTGTGTTGTTGTGGCCCCGAATGACAATGTTGACATAATCCAAACCAGTAGTTGGAAAGTTAATGTTGGATGCTTCTGTGACAGTTGATGGAATGACCTGAAATCAAATGTGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          179506 211 -  11645122 CTGAAGGTATGAATACCCT------------TGATCTTGGT-AAAAAATGGTGCCACC-CCTCAGCAAA--ATGTCACCGATTGGTGTCTATGTCACCTCACTG-AGTTAGCCTTTTGTGTTGTTGTGGCCCCGAATGACAATGTTGACATAATCCAAACCAGTAGTTGGAAAGTTAATGTTGGATGCTTCTGTGACAGTTGATGGAATGACCTGAAATCAAATGTGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          164776 211 -   6739814 CTGAAGGTATGAATACCCT------------TGATCTTGGT-AAAAAATGGTGCCACC-CCTCAGCAAA--ATGTCACCGATTGGTGTCTATGTCACCTCACTG-AGTTAGCCTTTTGTGTTGTTGTGGCCCCGGATGACAATGTTGACATAATCCAAACCAGTAGTTGGAAAGTTAATGTTGGATGCTTCTGTGACAGTTGATGGAATGACCTGAAATCAAATGTGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    54529 211 - 101219884 CTGAAGGTATGAATACCCT------------TGATCTTGGT-AAAAAATGGTGCCACC-CCTCAGCAAA--ATGTCACCGATTGGTGTCTATGTCACCTCACTG-AGTTAGCCTTTTGTGTTGTTGTGGCCCCAGATGACAATGTTGACATAATCCAAACCAGTAGTTGGAAAGTTAATGTTGGATGCTTCTGTGACAGTTGATGGAATGACCTGAAATCAAATGTGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          176959 211 -    785044 CTGAAGGTATGAATACCCT------------TGATCTTGGT-AAAAAATGGTGCCACC-CTTCAGCAAA--ATGTCACCGATTGGTGTCTATGTCACCTCACTG-AGTTAGCCTTTTGTGTTGTTGTGGCCCCGAATGACAATGTTGACATAATCCAAACCAGTAGTTGGAAAGTTAATGTTGGATGCTTCTGTGACAGTTGATGGAATGACCTGAAATCAAATGTGA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66007 212 -  10971483 CTGAAGGTATGAATACCCT------------TGATCTTGATAAAAAAAAGATGCCACC-CCTCAGCAAA--ATGTCACCAATTGGTGTCTATGTCACCTCACTG-AGTTAGCCTTTTGTGTTGTTGTGGCCCTGGATGACAATGTTGACGTAATCCAAACCAGTAGTTGGAAAGTTAATGTTGGATGCTTCTGTGACAGTTGATGGAATGGCCTGAAATCAAACGTGA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10922347 209 -  13128814 CTGAAGGTATGAATACCCT------------TGATCTTGGT-GGAAAATGTTACCACC-CGTCAGCAAA--ATTTCACTGATCAGTGTCTCTGTTACCTCACTG-AATTAGCCTTTTGCCTTGTTATTGCTCAGAATGACAAT-TTGACATAATCCAAAGCAGTAGTTGGAAAGTTAATGTTGAATGCTTCTGTGACAATTGATGCAATGTCCTGAAATCAAATAT-A
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7650735 209 +  14377064 CTGAAGGTATGAGTACCCT------------TGATCTTGGT-GGAAAATGGCACCACC-CTTCAGCAAA--ATTTCACTGATCAATGTCTCTGTTACCTCACTG-AGTTAGCTTTTTGCCTTGTTGTTGCTCAGGATGATAAT-TTGACATAATCCAAAGCAGTAGTTGGAAAGTTAATGTTGGATGCTTCTGTAACAATTGATGCAATGTCCTGAAATTAAATGT-A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4118965 202 -   9889416 CTGAAGGTATGAATACCCT------------TGATCTTGGT-GAAAAATGGTACCACC-CATCAGCAAA--ATTTCACTGATCAGTGTCTCTGTTACCTCACTG-AGTTAGCCTTTTGCCTTG---TTGCTCAAGATGACAAT-TTGACATAATCCAAAGCAGTAGTTGCAAAGTTAATGTTGGATGCTTCTGTGAC----GATGCAATGTCCTGAAATCAAATGT-A
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30864898 210 -  47401472 ATGTAGGCATGACTGCCCT------------TGGTCTTGGT-GGAAAATGGTGCCATC-CATTAGGAAG--ACTTCACTGGGCAGTGTCTATATTACCTTGCTG-AATGAACCTTTTTG-TTCTTATTGTCCAAAATGATAATGGTGACACAATCCAAAGCAGTAGTTGAGAAGTTAATGTATGATACTTCTATGACAATTGATGTAATGACTTGGAATTAAATGTGA
i micMur3.chr31                C 0 I 1476
s otoGar3.GL873528              20747049 211 +  38779656 ATATGGGTCGGACTGCTTT------------TGGTCTTGGT-GGAAAATGGTGCCGTA-CACTGATAAGACACTTCACTGGCCAGTGTCTACCTTACCTCACTGAAATGAGTCCGCTTGATTGCTGCTGTCCAAGATGACAGTGGTGACATTATCCAAAACAGTCATTGAGCAGTTAACATAAGATACTTCTGTAACATTTGATAGGATGACCTGGAATCAAGTG---
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28783795 204 -  39895921 CTGTAGATATGGCTGCTCT------------TGGTGCGGGT-GTAAAATGGTGTCATA-TAAACACAAG--ACTTAACTGACCAGTGTGTATACCACCTCACTG-AGTGAGTTCTAT---TTTTTGTTGTTCAGGA--GCAATAGTAACATAACAAAAAGTGGTAGTTGGGAAATTAATGTAAGATGCTTCTGGAACAATAGAGTGAATGA--TAAAATCAAATGTAA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6681476 220 +   6883506 TCATTGGTATGGCTTTATTGGTGTAATGCAGTGGTACTGGT-GGAAAACAGTGCTTTTAAATAAGCAAA--ATTTTATTGGGCAACAACCACGTCCCCTCCCTG-AGTGAGCCCCTT---CTTTGGTTGTTCCAGATGCCAGTGGTGATATAATCCAAAGCAGTAGTTGGGTAGTTAATGGAAGAT-CTTATGTGACAACTGGAGAAATGACCTGGAATCAAATGTGA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e panTro5.chr9                  41857570   0 + 116767853 C

a score=508541.000000
s hg38.chr14_GL000009v2_random    167464 57 +    201709 GGCAGTGGAGACACAAGAATGCTATTCAGGAAGTTAGTGATCTGTGGAGATACTAAA
s panPan2.chr3                  77818852 57 + 205426864 GGCAGTGGAGACTCAAGAATGCTATGCGGGCAGTTAGTGATCTGTGGAGATACTAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          228333 57 +    245036 GGCAGTGGAGACTCAAGAATGCTATTCGGGCAGTTAGTGATCTGTGGAGATACTAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42104284 57 -  86207423 GGCAGTGGAGACTCAAGAATGCTATTCAGGCAGTTAGTGATCTGTGGAGATACTAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261011 57 - 204787373 GGCAGTGGAGACTCAAGAATGCTATTCAGGCAGTTAGTGATCTGTGGAGACACTACG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    160218 57 - 192460366 GGCAGTGGAGACTCAAGAATGCTATTCAGGCAGTTAGTGATCTGTGGAGACACTACG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          179717 57 -  11645122 GGCAGTGGAGACTCAAGAATGCTATTCAGGCAGTTAGTGATCTGTGGAGACACTACG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          164987 57 -   6739814 GGCAGTGGAGACTCAAGAATGCTATTCAGGCAGTTAGTGGTCTGTGGAGACACTACG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    54740 57 - 101219884 GGCAGTGGAGACTCAAGAATGCTATTCAGGCAGTTAGTGATCTGTGGAGACACTACG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177170 57 -    785044 GGCAGTGGAGACTCAAGAATGCTATTCAGGCAGTTAGTGATCTGTGGAGACACTACG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66219 57 -  10971483 GGCAGTGGAGACTCAAGAATGCTATTCAGGCAGTTAGTGATATGTGGAGACACTCCG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10922556 57 -  13128814 GGAAGTGGAGATTCAGGAATGCCATTCAGACACTTGGTGATCTGTACAGATACGAAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7650944 57 +  14377064 GGAAGTGGAGATTCAGGAGTGCTATTCAGACACTTAGTGATCTGTGGAGATACTAAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4119167 57 -   9889416 GGAAGTGGAGATTCAGGAATGCTATTCAGACACTTAGTGATCTGTGGAAATACTAAA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20747260 52 +  38779656 GGGAGGGAAGACTTATGAATGCTGTCCGG----TTAGTGATGTGTGGACGT-CTACA
i otoGar3.GL873528             C 0 I 3
s canFam3.chr31                 28783999 56 -  39895921 -CAAGCAGAGATGCAAGAAAGCTGTTCAGAACATTCGTGACCTGTGGAAATATTAAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6681696 57 +   6883506 ACAGGCAAAGATTCAAGAAAGCAGTTCAGGCAGTTTGTTATCAGTGGATATACTAAA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e panTro5.chr9                  41857570  0 + 116767853 C

a score=629808.000000
s hg38.chr14_GL000009v2_random    167521 61 +    201709 TGAAATATCTGGAAGGAAATGTAATCTTGCAACTATGCTTTTATGTGTTTTTTGACATAAA
s panTro5.chr9                  41857570 61 + 116767853 TGAAATATCTGGAAGGAATTGTAATCTTGCAACTACGCTTTTATGTGTTTTTTGACATAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77818909 61 + 205426864 TGAAATATATGGAAGGACTTGTAATCTTGCAACTATGCTTTTATGTGTTTTTTGACATAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          228390 61 +    245036 TGAAATATCTGGAAGGACCTGTAATCTTGCAACTATGCTTTTATGTGTTTTTTGACATAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42104341 61 -  86207423 TGAAATATCTGGAAGGAATTGTAATCTTGCAAGTATGCTTTTATGTGTTTTTTGACATAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261068 61 - 204787373 TGAAATATCTAGAAGAGACTGTAATCTTGCAACTATGCTTGTATGTGTTTTTTGACATAAA
i rheMac8.chr2                 C 0 I 1
s macFas5.chr2                    160275 61 - 192460366 TGAAATATCTAGAAGAGACTGTAATCTTGCAACTATGCTTGTATGTGTTTTTTGACATAAA
i macFas5.chr2                 C 0 I 1
s macNem1.NW_012010856v1          179774 61 -  11645122 TGAAATATCTGGAAGAGACTGTAATCTTGCAACTATGCTTGTATGTGTTTTTTGACATAAA
i macNem1.NW_012010856v1       C 0 I 1
s cerAty1.NW_012001605v1          165044 61 -   6739814 TGAAATATCTGGAAGAGATTGTAATCTTGCAACTATGCTCTTACGTGTTTTTTGACATAAA
i cerAty1.NW_012001605v1       C 0 I 1
s chlSab2.chr22                    54797 61 - 101219884 TGAAATATCTGGAAGAGATTGTAATCTTGCAACTATGTTCTTACGTGTTTTTTGACGTAAA
i chlSab2.chr22                C 0 I 1
s manLeu1.NW_012099043v1          177227 61 -    785044 TGAAATATCTGGAAGAGACTGTAATCTTGCAACTATGCTTGTATGTGTTTTTTGACATAAA
i manLeu1.NW_012099043v1       C 0 I 1
s colAng1.NW_012123820v1           66276 61 -  10971483 TGAAATATCTGGAAGAGATTGTAATCTTGCAACTATGTTTGTATGTGTTTTTTGACATAAA
i colAng1.NW_012123820v1       C 0 I 4
s saiBol1.JH378168              10922613 61 -  13128814 TGAAATATCTGGAAGAGGTTGTTGTCTTGCAACTATGCTTTTATGTGGTTTTTGACGTAAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7651001 58 +  14377064 TGAAATATCTGGAAGAGGCTGTAGTCTTGCAACTATGCTTTTATGTGATTTTTGACGT---
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4119224 61 -   9889416 TGAAATATCTGGAAGAGGTTGTAGTCTTGCAACTATGCTTTTATGTGGTTTTTGACGTAAA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20747315 60 +  38779656 -TAAGTACCTGAAAGTACTTGTAATCTTGCAAGTGTGATTTTATGTGCTTTTTGCCATAAA
i otoGar3.GL873528             I 3 C 0
s canFam3.chr31                 28784055 57 -  39895921 TGTAATATCTGGAAG---TTGTGACCTTGCAACT-TTCCTTAAAGTGGTCATTGCTATAAA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6681753 61 +   6883506 TGAAATATCTGGAGTTGGTTGTAGTTTTGCAACTGTCCTTTCATTTGGTTCTCACTCTGAA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=109900.000000
s hg38.chr14_GL000009v2_random    167582 45 +    201709 CAG-----------TTTCTATTTATGGTGGAGCTAGAGTGTCCATTTCCCATG--AAG
s panTro5.chr9                  41857631 45 + 116767853 CAG-----------TTTCTATTTATGGTGGAGCTGCAGTGTCCATTTCCCATG--AAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77818970 45 + 205426864 CAG-----------TTTCTATTTATGATGGAGCTGCAGAGTCCATTTCCCATG--AAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          228451 45 +    245036 CAG-----------TTTCTATTTATGATGGAGCTGCAGAGTCCATTTCCCATG--AAG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42104402 45 -  86207423 CGG-----------TTTCTATTTATGATGGAGCTGCAGAGTGCATTTCCCATG--AAG
i nomLeu3.chr21                C 0 C 0
s saiBol1.JH378168              10922674 42 -  13128814 CAG-----------TTTCTATTT---ATGAAGTTGTAGTGTTCATTTCCCACT--AAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7651059 33 +  14377064 -AG-----------TTTCTATTTATGATGAAATTGTAGTGTTC-------------AT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4119285 45 -   9889416 CGG-----------TTTCTATTTATGATGAAGTTGTAGTGTTCATTTCCCACT--AAG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20747375 48 +  38779656 CAGTCA--------TTTCCATTCATGACGGAGCTGTGACGTCCATTTCCCAGG--CAG
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28784112 55 -  39895921 ---TAAGACCTTTTTTTCTGATTGTGATGGAGATATAGTGTCCATTTCCTATAGTAAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6681814 48 +   6883506 --------CTAATGTTTCTATTTGTAATGGAGCTATAGGACCCATTTCCCATG--AAA
i dasNov3.JH568778             C 0 I 309
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261129  1 - 204787373 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e colAng1.NW_012123820v1           66337  4 -  10971483 I
e manLeu1.NW_012099043v1          177288  1 -    785044 I
e chlSab2.chr22                    54858  1 - 101219884 I
e cerAty1.NW_012001605v1          165105  1 -   6739814 I
e macNem1.NW_012010856v1          179835  1 -  11645122 I
e macFas5.chr2                    160336  1 - 192460366 I

a score=35709.000000
s hg38.chr14_GL000009v2_random    167627 11 +    201709 TTCCCATGGTG
s panTro5.chr9                  41857676 11 + 116767853 TTCCCATAGTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77819015 11 + 205426864 TTCCCACAGTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          228496 11 +    245036 TTCCCACAGTG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42104447 11 -  86207423 TTCCCACAGTG
i nomLeu3.chr21                C 0 C 0
s saiBol1.JH378168              10922716 11 -  13128814 TTCCCATAGTG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7651092 11 +  14377064 TTCCCATAGTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4119330 11 -   9889416 TTCCCATAGTG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20747423 11 +  38779656 TACCCACAGTA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28784167 11 -  39895921 ATCTCATAATG
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261129  1 - 204787373 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e colAng1.NW_012123820v1           66337  4 -  10971483 I
e dasNov3.JH568778               6681862 309 +   6883506 I
e manLeu1.NW_012099043v1          177288  1 -    785044 I
e chlSab2.chr22                    54858  1 - 101219884 I
e cerAty1.NW_012001605v1          165105  1 -   6739814 I
e macNem1.NW_012010856v1          179835  1 -  11645122 I
e macFas5.chr2                    160336  1 - 192460366 I

a score=631868.000000
s hg38.chr14_GL000009v2_random    167638 256 +    201709 TTAACTAATAcagtcatgtgtcacttaatgacaggggtg-tgtctgagaaatgcattgctggacaattttattattgtatgaacatcacagagtttacttacacaaacctagatgctatag----ctgattacatatctaggttaggtggtatagcctattcctcctaggctacaaacctgtgcagcatgttactgtactgaatactgtaggcaattgtaacacaacagttaagtatatc--tatacttacttatatctatac
s panTro5.chr9                  41857687 256 + 116767853 TTAACTAGTAcagtcatgtgtcacttaatgacaggggtg-tgtctgagaaatgcattgctggacaattttattattgtatgaacatcacagagtttacttacacaaacctagatgctttag----ctgattatatacctaggttaggtggtatagcctattcctcctaggctacaaacctgtgcagcatgttactgtactgaatactgtaggcaattgtaacacaacagttaagtatatc--tatacttacttatatctatac
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77819026 256 + 205426864 TTAACTAATAcagtcatgtgtcacttaatgacaggggta-agtctgagaaatgcattcctggacaattttattattgtatgaacatggcagagtttacttacacaaacctaaatgctatag----ctgattacatacctaggttatgtggtatagcctattcctcctaggctacaaacctgtgcagcatgttactgtactgaatactgtaggcagttgtaacacaacagttaagtatatc--tatgcttacttatatctatac
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          228507 256 +    245036 TTAACTAATAcagtcatgtgtcacttaatgacaggggta-tgtctgagaaatgcattcctggacaattttattattgtatgaacatggcagagtttacttacacaaacctagatgctatag----ctgattacatacctaggttatgtggtatagcctattcctcctaggctacaaacctgtgcagcatgttactgtactgaatactgtaggcaattgtaacacaacagttaagtgtatc--catgcttacttatatctatac
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42104458 258 -  86207423 TTAACTAATATagtcatgtgtcacttaatgacaggggta-tgtctgagaaatgcattgctggacaattttattattgtatgaacatcacagagtttacttacacaaacctagatgctatag----ctgattacatgcctaggctatatggtgtagcctattcctcctaagctacaaacctgtgcagcatgttactgcactgaatactgtaggcaattgtaacacaacagttaagtatagctatatgcttacttatatctatac
i nomLeu3.chr21                C 0 C 0
s saiBol1.JH378168              10922727 253 -  13128814 TTAACTAATAcagtcatgtgtcacttaatgacaaggata-tgtctgagaaatgcattgctggacagtt---tttttgtatgaacatcacagagtgtacttacacaaacctagatggtatag----ctgatcacatatctaggctatatggtatagcctattactcctaggctataaacctatacagcatgatactgtactgaatactgtaggcaattataacacaacagttcagtatatc--tatacttaattatatctatac
i saiBol1.JH378168             C 0 I 199
s cebCap1.NW_016107322v1         7651103 253 +  14377064 TTAACTAATAcagtcatatgtcacttaacgacagggata-tgtctgagaaatgcattgctggatagtt---ttattgtgtgaacatcacagagtgtacttacacaaacctagatgatatag----ctgattacatatctaggctgtatggtacagcctattactcctaggctataaacctatacagcgtgttactgtactgaatactgtaggcaattataacactacagttcagtatatc--tatacttacttatatctatag
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4119341 244 -   9889416 TTAACTGATAcagtcatgtgtcacttaatcacagggata-tgcctgagaaatgcattgctggacagtt---ttattgtgtgaacatcacagagtgtacttacacaaacctagatggtatag----ctgattacatatctaggctatatggtatagcctattactcctaggctataaacctatacagtatgttactatactgaatactgtaggcaattataacacaacagttcagtatatc--tatacttactta---------
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20747434 238 +  38779656 TAACCTAATAcagtcacacatcgcttaaagaataggatgctttctgagaaacacatcattaggaaacttcattttactgtgaacatcctagagtgaattgatacaaacataaatggtatagtcttctg-ctacctccctcggctgtatgaagtagcctattgctcttaggctacaaacctgtacagcatgttactgtactg-ttactagataaagctgtaacaggatgg-aaagtatgtc--t--------------------
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261129   1 - 204787373 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28784178   0 -  39895921 C
e colAng1.NW_012123820v1           66337   4 -  10971483 I
e dasNov3.JH568778               6681862 309 +   6883506 I
e manLeu1.NW_012099043v1          177288   1 -    785044 I
e chlSab2.chr22                    54858   1 - 101219884 I
e cerAty1.NW_012001605v1          165105   1 -   6739814 I
e macNem1.NW_012010856v1          179835   1 -  11645122 I
e macFas5.chr2                    160336   1 - 192460366 I

a score=269982.000000
s hg38.chr14_GL000009v2_random    167894 124 +    201709 agtaagtgtatctatacatgtctaaacatacaagaggtacagtaaaagtacagtgttatgattttattgcaccactgaaatacatgtgcactatccttgaccaaaatgttgttatgtgatgcat
s panTro5.chr9                  41857943 124 + 116767853 agtaagtgtatctatacatgtctaaacatacaagaggtacagtaaaaatacagtgttatgattttattgcaccactgtcatacatgtgcactatccttgaccaaaatgttgttatgtgatgcat
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77819282 119 + 205426864 agtaagtgtatctatacatgtctaaacatacaagaggtacagtaaaaat--agtgttatgattttattgcaccagtgtcatatatgtgcaccatccttgaccaaaa---tgttatgtgacgcat
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          228763 119 +    245036 agtaagtgtatctatacatgtctaaacatacaagaggtacagtaaaaat--agtgttatgatttcattgcaccactgtcatatatgtgcaccatccttgaccaaaa---tgttatgtgatgcat
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42104716 121 -  86207423 agtaagtgtatctatacatgtctaaacatagaagaggtacagtaaaaatacagtgttatgattttattgcaccactgtcatgtgtgtgcaccatccttgaccaaaa---tgttatgtgatgtac
i nomLeu3.chr21                C 0 C 0
s saiBol1.JH378168              10923179 124 -  13128814 AGTAAgtgtatctatacatatctaaacatagaggatgtacagtaaaaatagagtgttataattgtattggaccattctcatatatgtacagcatccttgaccaaaatgttattatgtggtgcat
i saiBol1.JH378168             I 199 C 0
s cebCap1.NW_016107322v1         7651356 124 +  14377064 agtaagtatatctatacatatctaaacatagaggaggtacagtaaaaatacagtgttataattgtattggaccactctcatatatgtacaccatccttgaccaaaatgttgttatgtggtgcat
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4119585 116 -   9889416 --------tatctatacatatctaaacatagaggaagtacagtaaaaatacagtgttataattgtattggaccactcttatatatgtacaccatccttgaccaaaatgttgttatgtggtgcat
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20747672 109 +  38779656 -----------ttaaacctagctaaatatagaaaagccacagggaaaatagggtattctaacactgtggggtccccatcctatatatg-gtctctgtggactgaaa---tgtcctgtggtacat
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261129   1 - 204787373 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28784178   0 -  39895921 C
e colAng1.NW_012123820v1           66337   4 -  10971483 I
e dasNov3.JH568778               6681862 309 +   6883506 I
e manLeu1.NW_012099043v1          177288   1 -    785044 I
e chlSab2.chr22                    54858   1 - 101219884 I
e cerAty1.NW_012001605v1          165105   1 -   6739814 I
e macNem1.NW_012010856v1          179835   1 -  11645122 I
e macFas5.chr2                    160336   1 - 192460366 I

a score=14178.000000
s hg38.chr14_GL000009v2_random    168018 10 +    201709 gattg-TAACA
s panTro5.chr9                  41858067 10 + 116767853 gattg-TAACA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77819401 10 + 205426864 gattg-TAACA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          228882 10 +    245036 gattg-TAAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42104837  9 -  86207423 gattg--AACA
i nomLeu3.chr21                C 0 C 0
s saiBol1.JH378168              10923303 11 -  13128814 gattgTTAAGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7651480 10 +  14377064 gattg-TAAGG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4119701 10 -   9889416 gattA-TAAGG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20747781  8 +  38779656 gac---tAATG
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6682171 10 +   6883506 ggtta-tgaca
i dasNov3.JH568778             I 309 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261129  1 - 204787373 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28784178  0 -  39895921 C
e colAng1.NW_012123820v1           66337  4 -  10971483 I
e manLeu1.NW_012099043v1          177288  1 -    785044 I
e chlSab2.chr22                    54858  1 - 101219884 I
e cerAty1.NW_012001605v1          165105  1 -   6739814 I
e macNem1.NW_012010856v1          179835  1 -  11645122 I
e macFas5.chr2                    160336  1 - 192460366 I

a score=763944.000000
s hg38.chr14_GL000009v2_random    168028 248 +    201709 AAAGAATTAATT----AAATATAATATTGAAGTGCCTATTGAGATTTCAATGAA-AAAAGGAATAT-TTG-TAAATTCTGATTACCTTAAGTGGGAATTGACTTTATTCCTGTTTCCATGGCTGTTCTTGTGAAAGAGCATAGCTTTCCAAAGACCTGAAATCTCTGACAAATCTTGCAATTCTCTATTGCCTGCATTATGAAGGTCACCTGGTATCAAATGAGGCAAAATGGTAGATTATAAAGACCTGTA----CTT
s panTro5.chr9                  41858077 252 + 116767853 AAAGAATTAATT----AAAGATAATATTGAAGTGCCTATTGAGATTTCAATGAA-GAAAGGAATAT-TTG-TAAATTCTGATTATCTTAAGTGGGAATTGACTTTCTTCCTGTTTCCATGGCTGTTCTTGTGAAAGAGCATAGCTTTCCAAAGACCTGAAATCTCTGACAAATCTTGCAATTCTCTATTGCCTGCATTATGAAGGTCACCTGGTATCAAATGAGGCAAAATGGTAGATTATAACGACCCGTATTTTCTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77819411 252 + 205426864 AAAGAATTAATT----AAAGATAATATTGAGGTGCCTATTGAGATTTCAATGAA-GAAAGGAATAT-TTG-TAAATTCTGATTACCTTAAGTGAGAACTGACTTTCTTCCTGTTTCCATGGCTGTTCTTGTGAAAGAGGATAGCTTTCCAAAGACCTGAAATCTCTGACAAATCTTGCAATTCTCTATTGCCTGCGTTATGAAGGTCACCTGGTATCAAATGAGGCAAAATGGTAGATTATAAAGACCTGTACTTTCTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          228892 252 +    245036 AAAGAATTAATT----AAAGATAATATTGAAGTGCCTATTGAGATTTCAATGAA-GAAAGGAATAT-TTG-TAAATTCTGATTACCTTAAGTGAGAACTGACTTTCTTCCTGTTTCCATGGCTGTTCTTGTGAAAGAGGATAGCTTTCCAAAGACCTGAAATCTCTGACAAATCTTGCAATTCTCTATTGCCTGCGTTATGAAGGTCACCTGGTATCAAATGAGGCAAAATGGTAGATTATAAAGACCTGTACTTTCTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42104846 251 -  86207423 AAAGAATTAATT----AAAGATAATATTGAAGTGCCTATTGAAATTTCAATGAA-GGAAGGAATAT-TTG-TAAATTCTGATTTCCTTAAGTGGGAATTGACTTTCTTCCTGTTTCCAAGGCTGTTCTTGTGAAAGGGCATAGCTTTCCAAAGACCTGAAATCTCCGACAAATCTTGCAATTCTCTGTTGCCTGCATTATGAAGGTCACCTGGTATCAAATGAGG-AAAATGGTAGATTAGAAAGACCTGTACTTTCTT
i nomLeu3.chr21                C 0 C 0
s saiBol1.JH378168              10923314 253 -  13128814 AAAGaattaatta---aaatataatattGAAGTGCCTATTGAGATTTCAATGAA-GAAAGGAAGAT-TTG-TAAATTCTGATTACCTTAAGTGGGAATTGACTTTCTTCCTGTTTCCACTGCTGTTCTTGTGAAATGTTGTAGCTTTCCAAAGACCTGAAATCTCCGACAAATCTTGTAATTCTCTATTGCCTGCGTTATGAATGTCACCTGATATCAAATGAGGCAAAACTGTAGATTGTAAAGACCTGTACTTTCTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7651490 253 +  14377064 AAAGAATTAATTA---AAAGGTAATATTGAAGTGCCTATTGAGATTTCAATGAA-GAAAGGAAGAT-TTG-TAAATTCTGATTACCTTAAGTGGGAATTGACTTTCTTCCTGTTTTCATGGCTGTTCTTGTGAAATGTCGTAGCTTTCCAAAGACCTGAAATCTCTGGCACATCTTGGAATTCTCTATTGCCTGCATTATGAATGTTACCTGATACCCAATGAGGCAAAATTGTAGATTATAAAGACCTGTACTTTCTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4119711 253 -   9889416 AAAGAATTAATTA---AAAGTTAATATTGAAGTGCCTATTGAGATTTCAATAAA-GAAAGGAAGAT-TTG-TAAATTCTGATGACCTTAAGTGGGAATTGACTTTCTTCCTGTTTCCATGGCTGTTCTTGTGAAATGTTGTAGCTTTCCAAAGACCTGAAATCTCTGACAAATCTTGGAATTCTCTATTGCCTGCATTATGAGTGTCACCTGACATCAAATGAGGCAAAATGGTAGATTATAAAGACCTGTACTTTCTT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20747789 245 +  38779656 GAACGATTA-------AAAAATAGCACTGAAGTACCTTTTGAGACTTTTGCAAT-GGAAGGAAA----TG-TAAATTCTGATCACCTCAACTGGGAATTGGCTTCCTTCCTGCCTCCATGGCTCTTCTCTTGAAATACTGCAGCTGTCCAAGGACCCACAGTCTCTGACAAATCCTGGAATTCTCCATGGCCTGCATCATGAAGGTCACCTGGTAAAATATGAGGTAAAATACTAGATTGTGAAGACATA-GTTTTATT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28784178 241 -  39895921 AAGGAATTAATA----AATAATAGTACTGAAGTGCCCACCGGGATTTCAACAAATGAAAGATGTGT-TTGTTAAATTCTGATCACCTGAAGAGGGAA-----TTCCTTCCTTCTCACATAACTGTTC---TGAAATGCTGCAGCTGCCCAGGAATGTAGAATGTCTGATATATCTTGGTATTCTCTAGTA-CTGAAAAATGAGGATCACCTGGTGTCAAATGAGGCAAATTTTTATGTTACAAAAACAGGTACTT----
i canFam3.chr31                C 0 I 124
s dasNov3.JH568778               6682181 223 +   6883506 agatatttaatggcccgtatttgtcattgcaatgtccttcaagataattcccaa-gtcccaaaaatgcca-catattatgtctgtttt------------tccctctccctcccTTCATG-----------------CTGCAGTTTCTTGAGGACCTGAAATTCTTGAGAA--TCTAGGATACTTCATA--CTGTGTAATGAAGCTCACTTGCTTTTGAATGAGGCAAAATGCTAGATTATAAGAACAGG-ACTTTCTT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261129   1 - 204787373 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e colAng1.NW_012123820v1           66337   4 -  10971483 I
e manLeu1.NW_012099043v1          177288   1 -    785044 I
e chlSab2.chr22                    54858   1 - 101219884 I
e cerAty1.NW_012001605v1          165105   1 -   6739814 I
e macNem1.NW_012010856v1          179835   1 -  11645122 I
e macFas5.chr2                    160336   1 - 192460366 I

a score=380258.000000
s hg38.chr14_GL000009v2_random    168276 115 +    201709 GTCAGTTCCTAAACATAGCAAGCCTTGGTCTATCTTGAACATTTCTGCAGT---TATAAATGAGCCTTGGGTCATGA-Ttttctgcctttttatcaaagaca--agatttaatttaggaga
s panTro5.chr9                  41858329 115 + 116767853 GTCCGTTCCTAAACATAGCAAGCATTGGTCTATCTTGAACATTTCTACAGT---GATAAACTAGCCTTGGGTCATGA-Ttttctgccattttatcatagata--agatttaatttaggaga
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77819663 115 + 205426864 GTCAGTTCCTAAACATAGCAAGCATTGGTCTGTCTTGAACACTTCTGCAGT---TATAAACTAGCCTTGGGTCATGA-Ttttctgcctttttatcatagaca--agatttaatttaggaga
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229144 115 +    245036 GTCAGTTCCTAAACATAGCAAGCATTGGTCTGTCTTGAACACTTCTGCAGT---TATAAACTAGCCTTGGGTCATGA-Ttttctgcctttttgtcatagaca--agatttaatttaggaga
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105097 115 -  86207423 GTCAGTTCCTAAACATAGCAAGCATTGGGCTGTCTTGAACATTTCTGCGGT---TATAAACTAGCCTTGGGTCATGA-TTTTCTGCCTTTTTATCATAGACA--AGATTTAATTTAGGAGA
i nomLeu3.chr21                C 0 C 0
s saiBol1.JH378168              10923567 112 -  13128814 GTCAGTTCCTAAACATAGCAAGGATTGGTCTGTCTTGAACATTTCCGCAGT---TTTAAACTAACCTTGGGTCATAA-ATTTCTGCCTATCTATCATAGATA--CGATTTCATTT---AGA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7651743 108 +  14377064 GTCGCTTCCTAAACATAGCAAGCATTGGTCTGTCTTGAATATTTCTGCAGT---TATAAACTAACATTGGGTCATAA-ATTTCTGC----CTATCATAGATA--AGATTTAATTT---AGA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4119964 112 -   9889416 GTCAGTTCCTAAACATAGAAAGCATTGGTCTGTCTTGAACATTTCTGCAGT---TATAAACTAACCTCGGGTCATAA-Atttctgcctatctatcatagaca--agatttaattt---aga
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20748034 119 +  38779656 GTCAACCTCTAAACAGAGCAGGCATTGACCCATCTTGAATGTTTGTGCAGTTACTATGGACTCACCTTGAATCATGGTTTTTTTGTCTATTTGTGACAGACA--ATATTAAATTTGATACA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28784543 120 -  39895921 GTTAACCCCTAAATAGAGCAGGCATTAGTTTGTCTTGAATATTTCTGCAGTTATTATGGACTAAACTTGGGTCATTA-TTTTCTGCCTACTTATCGTAGAAGACATATTTAGTTTGGGAAA
i canFam3.chr31                I 124 I 398
s dasNov3.JH568778               6682404 118 +   6883506 GTTCATCTTGAAATAGAGCAGGCATTGGTCTATCTTGAAGTTTTCTGCAATTATTTTAGACTAACCTTGAGCCATAA-ATTTCTGCCAGTTTATTATAGACA--ATATTTATTTTGGGAGA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261129   1 - 204787373 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e colAng1.NW_012123820v1           66337   4 -  10971483 I
e manLeu1.NW_012099043v1          177288   1 -    785044 I
e chlSab2.chr22                    54858   1 - 101219884 I
e cerAty1.NW_012001605v1          165105   1 -   6739814 I
e macNem1.NW_012010856v1          179835   1 -  11645122 I
e macFas5.chr2                    160336   1 - 192460366 I

a score=1127002.000000
s hg38.chr14_GL000009v2_random    168391 389 +    201709 tgtccttttaatgtgtaatgtgaatagtaagtgacacttatgaagcc-tattttcttccagccattttaattgtc-aaatct-gtccagtcaagatgcattgttagagg-cttcactgacaacaccgTC--------tgtgtgtgtgggtgtgtgtgtgtgt--------------ATACATAC--------------------ATATGATTGAGCAGGATTTATTGTAAGTCAAAACAGTCTCAAATTTCTTAGGACAATACAGCTTCCTTGGCCATTCCCTTGGAGCTCTGAGTTGAGGAGCTGGTGATGTGTATTTCTCTGGCATGTTC-TCCACATTATCCCTATGCAGGCCTTTCATGGGC-TTGGTTTTGGAACCAGTGATG-AGGAAGATCACTAGAATTGTTGTTCTCAAAAAGATTCCTCCATTCTTCT
s panTro5.chr9                  41858444 398 + 116767853 tgtcctcttaatgtgtaatgtgaatagtaagtgccacttatgaagccctattttcttccagccattttaattgtc-aaatct-gtccagtcaagatgcattgttagagg-cttcactgacaacaccgtc--------tgtgtgtgtgtgtgtgtgtgtgtgt------gtgtgtgtATACATAC--------------------ATATGATTGAGCTGGATTTAATGTAAGTCAAAACAGTCTCAAATTTCTTAGGACAATACAGCTTCCTTGGCCATTCCCTTGGAGCTCTGAGTTGAGGAGCTGGTGATGTGTATTTCTTTTGCATGTTC-TCCACATTATCCCTATGCAGGCCTTCCATGGGC-TTGGTTTTGGAACCAGTGATG-AGGAAGATCATTAGAATTGTTGTGCTCAAAAAGATTCCCCCATTCTTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77819778 398 + 205426864 tgtccatttaatgtgtaatgtgaatagtaagtgccacttatgaagccctattttcttccagccattttaattgtc-aaatct-gtccagtcaagatgcattgttagagg-cttcactgacaacaccgtc--------tgtatgtgtgtctgtgtgtgtgtgt------gtgtgtgtATACATAC--------------------ATATGATTGAGCAGGATTTAATGTAAGTCAAAACAGTCTCAAATTTCTTAGGACAATACAGCTTCCTTGGCCATTCCCTTGGAGCTCCGGGTTGAGGAGCTGGTGATGTGTATTTCTTTTGCATGTTC-TCCACATTATCCCTATGCAGGCCTTCCATGGGC-TTGGTTTTGGAACCAGTGATG-AGGAATATCATTAGAATTGTTGTGCTCAAAAAGATTCCTCCATTCTTCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229259 390 +    245036 tgtccatttaatgtgtaatgtgaatagtaagtgccacttatgaagccctattttcttccagccattttaattgtc-aaatct-gtccagtcaagatgcattgttagagg-cttcaCTGACAACACTGTC--------TGTATGTGTGTCTGTGTGTGTGTGT--------------ATACATAC--------------------ATATGATGGAGCAGGATTTAATGTAAGTCAAAACAGTCTCAAATTTCTTAGGACAATACAGCTTCCTTGGCCATTCCCTTGGAGCTCCGGGTTGAGGAGCTGGTGATGTGTATTTCTTTTGCATGTTC-TCCACATTATCCCTATGCAGGCCTTCCATGGGC-TTGGTTTTGGAACCAGTGATG-AGGAATATCATTAGAATTGTTGTGCTCAAAAAGATTCCTCCATTCTTCT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105212 378 -  86207423 TGTCCTTTTAATGTGTTATGTGAATAGTAAGTGCCACTTATGAAGCCCTATTTTCTTCCAGTCATTTTAATTGTA-AAATCT-ATCCA-------------GTTAGAGG-CTTCACTGACGACACCgtc--------tgtgtgtgtgtgtgtgtgtgtgtct------------gtgtACATAC--------------------ATATGATTGAGCAGGATTTAATGTAAGTCAAAACAGCCTCAAATTTCTTAGGACAATACAGCTTCCTTGGCCATTCCCTTGGAGCTCTG-GTTGAGGAGCTGGTGATGTGTATTTCTTTTGCGTGTTC-TACACGTTATCCCTATACAGGCCTTCCTTGGGC-TTGGTTTTGGAACCAGTGATG-AGGAATATCATTAGAATTGTTGTGCTCAAAAAGATTCCTCCATTCTTCT
i nomLeu3.chr21                C 0 C 0
s saiBol1.JH378168              10923679 393 -  13128814 TGTCCTTTTAACGTGTGATGTTAATAGTAAGTGAGATTTATAAAGGCCTATCTTCTTCCAGCCATTTTAATGGTC-AAATCT-GTCTAATCAAGATGCATTGTT-GAGG-CTTAACTGATAACACCATC--------tgtgtgcgtgtgtgtttgtgtgtat----------gtgtgtgtATAC--------------------ATATGATAGAGCAGGATGTAATGTAAGTTAAAACAGTCTCAAATTTGTTAGGACAATACAGATTCCTTGGCTATTCCCTTGGAGCTCTAGGTTGAAGAGCTGGTGATGTGTATTTCCTTTGCATGTTG-TCCACATTATCCCTATGCAGACATTCCCTGAGC-TTGGTTTTGGAACAAGTGATG-AGGAATATCATTAGAATTGCTGTGCTCAAAAAGATGCCTCCATTCTTCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7651851 389 +  14377064 TGTCCTTTTAATGTGTGATGTTAATAGTAAGTGCGATTTATAATGTCCTATCTTCTTCCAGCCATTTTAATTGTC-AAATCT-GTCCAATCAAGATGCAGTGTT-GAGG-CTTCACTGATAACACCATC--------tgtgtgtgtgtg----tgtgtgtgt----------gtgtgtgtTTAC--------------------ATATGATTGAGCAGGATATAATGTAAGTTAAAACAGTCTCAAATTTGTCAGGACAATACAGATTCCTTGGCCATTCCCTTGTAGCTCTAGGTTGAAGAGCTGGCAAAGTGTATTTCTTTTGCATGTTC-TCCACATTATCCTTATGCAGACATTCCCTGAGC-TGGGTTTTGTAACAAGTGATG-AGGAATATCATTAGAATTGCTACACTCAAAAAGATTTCTCCATTCTTCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4120076 400 -   9889416 tgtccttttaatgtgtgatgttaacagtaagtgccatttataaaggcctatcttcttccagccattttaattgtc-aaatct-gtccaatcaagatgcattgtt-gagg-cttcaCTGATGTCAGCATCTGTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgt----------gtgtgtgtgtAC--------------------ATATGATTGAGCAGGATGTAATGTAGGTTAAAACAGTCTCAAATTTGTTAGGACAATACAGATTCCTTGGCCATTCCCTTGGAGCTCTAGATTGAAGAGCTGGCGATGTGTATTTCTTTTGCATGTTC-TCCACATTATCCCTATGCAGACGTTCCCTGAGC-TTGGTTTTGGAACAAGTGATG-AGGAATATCATTAGAACTGCTATGCTCAAAAA-ATTCCTCCATTCTTCT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20748153 404 +  38779656 TGTTCTCTCAATATGTGCTGTGAATAGTAAGTGCCATTTATAAGAGTCTGTGTTCTTCTAGTCATTT------TC-AAATGC-CTGAAAATAAGAGGCAGTGTTAGAGGACTTCACTGACAA---TGTC--------tgtgtgcgtatgtgtgcatgtatatgtttgtgtgtttatatatatacacatatacacatctatatctatatgATTGGACAGGATGTAATGTAACTCACAGCCATCTCAAACTTGTCAGGACGACGAAGTTTCCTGGGCT-TTCCCTTTATGCTATAGGTTGAGGAGCTGGGAACATCAATTCCTTCGTCATATCCTTTCAGATTTTCGCCATGTAGACCTAGCATGGGC-TTGGATTTGAAA-------------AACATCATTAGAATTGCTATGTTCAATAATATTCCTCTATTCTTTC
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28785061 335 -  39895921 TGTTCTTTTAATATGTGATGTGAATTGTAAATGCCATTTGTAAAGGTCTACTACCTTCCAGTCATTTTAATTGCCTAATTCT-GGGTAGTCAGGAAGCACAGTTAGAGGCCTTCTTTGATGTCATTATA------------------------------TAG--------------ATATAGAC--------------------AGATAACTA-----------------------------TCAATATTTTGTGATTAGTAAGTATT--TTGACCTTTCTTCTAGGTTTCTGGGTTGGGGAGCTGGGCTTATGTATTTCTTTCACATGTCCTTCCAAATTATACTTATGCAGATTTTCCA-GTGT-TGCATTTGGCAAACACTGATG----GAGATTATTAGAATTGCTATGCTCAGGAA-ATTCTTCCATTCTTCC
i canFam3.chr31                I 398 C 0
s dasNov3.JH568778               6682522 352 +   6883506 TGTCTTTTTAATATGTGAAATTAATAGTAAGTGATGTTTATGAAGATCT---TTCTCCAAGCAATTTTAATGATC-AAATCTGGTACAATCAAGAGGTATTGTTAGAGGCCTTCACTTGTAACATCAAA--------TG--------------------------------------------C--------------------ATATGATTGGCCAGTGTGTGGTATAACTCATTGTGATGCTAAACCTGTTAAGACAGTGAAGATTCTTTGGTCTTGACCCTGGAGCTCTGGCTTGGG----------TATGTATGTATTTTACATGTCCCTCCAGATTCTTCTTATGTAGGCTCTTCATAGGCTTTCAGTTGGGAACTGCTGACATAAAAAAATGATTAGAATTACCATGCTCAAAAAGAATCTTCCATTCTTCC
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261129   1 - 204787373 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e colAng1.NW_012123820v1           66337   4 -  10971483 I
e manLeu1.NW_012099043v1          177288   1 -    785044 I
e chlSab2.chr22                    54858   1 - 101219884 I
e cerAty1.NW_012001605v1          165105   1 -   6739814 I
e macNem1.NW_012010856v1          179835   1 -  11645122 I
e macFas5.chr2                    160336   1 - 192460366 I

a score=29571.000000
s hg38.chr14_GL000009v2_random    168780 3 +    201709 GTA
s panTro5.chr9                  41858842 3 + 116767853 GTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820176 3 + 205426864 GTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229649 3 +    245036 GTA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105590 3 -  86207423 GTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261130 3 - 204787373 GTA
i rheMac8.chr2                 I 1 C 0
s macFas5.chr2                    160337 3 - 192460366 GTA
i macFas5.chr2                 I 1 C 0
s macNem1.NW_012010856v1          179836 3 -  11645122 GTA
i macNem1.NW_012010856v1       I 1 C 0
s cerAty1.NW_012001605v1          165106 3 -   6739814 GTA
i cerAty1.NW_012001605v1       I 1 C 0
s chlSab2.chr22                    54859 3 - 101219884 GTA
i chlSab2.chr22                I 1 C 0
s manLeu1.NW_012099043v1          177289 3 -    785044 GTA
i manLeu1.NW_012099043v1       I 1 C 0
s saiBol1.JH378168              10924072 3 -  13128814 ATA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7652240 3 +  14377064 ATA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4120476 3 -   9889416 ATA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20748557 3 +  38779656 ATA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28785396 3 -  39895921 ATA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6682874 3 +   6883506 ATA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e colAng1.NW_012123820v1           66337 4 -  10971483 I

a score=191407.000000
s hg38.chr14_GL000009v2_random    168783 20 +    201709 TAAGCAATGGCAATTTTCCC
s panTro5.chr9                  41858845 20 + 116767853 TAAACAATGGCAATTTTCCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820179 20 + 205426864 CAAGCAACGGCAATTTTCCC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229652 19 +    245036 CAAGCAA-GGCAATTTTCCC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105593 20 -  86207423 TAAGCAATGGCAATTTTCCC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261133 20 - 204787373 TAAGCAATGGCAGTTTTCCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    160340 20 - 192460366 TAAGCAATGGCAGTTTTCCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          179839 20 -  11645122 TAAGCAATGGCAGTTTTCCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165109 20 -   6739814 TGAGCAATGGCAGTTTTCCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    54862 20 - 101219884 TAAGCAATGGCAGTTTTCCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177292 20 -    785044 TAAGCAATGGCAGTTTTCCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66341 20 -  10971483 TAAGCAGTGGCAGTTTTCCA
i colAng1.NW_012123820v1       I 4 C 0
s saiBol1.JH378168              10924075 20 -  13128814 TAAGCAAAGGCAATTTTCCC
i saiBol1.JH378168             C 0 I 285
s cebCap1.NW_016107322v1         7652243 20 +  14377064 TAAGCAATGGCAATTTTCCC
i cebCap1.NW_016107322v1       C 0 I 284
s aotNan1.NW_018487195v1         4120479 20 -   9889416 TAAGCAATGGCAATTTTCCC
i aotNan1.NW_018487195v1       C 0 I 293
s otoGar3.GL873528              20748560 20 +  38779656 TAAACAATGGCAATTTTCTT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28785399 20 -  39895921 CATACAATAATAACTTTCCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6682877 16 +   6883506 TATGCAATG---ATTTTCT-
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=42156.000000
s hg38.chr14_GL000009v2_random    168803 6 +    201709 AGACCA
s panTro5.chr9                  41858865 6 + 116767853 AGACCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820199 6 + 205426864 AGACCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229671 6 +    245036 AGACCA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105613 6 -  86207423 AGAGCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261153 6 - 204787373 AGACCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    160360 6 - 192460366 AGACCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          179859 6 -  11645122 AGACCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165129 6 -   6739814 AGACCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    54882 6 - 101219884 AGACCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177312 6 -    785044 AGACCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66361 6 -  10971483 AGACCC
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20748580 6 +  38779656 AGACTG
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28785419 6 -  39895921 AGTCCA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6682893 6 +   6883506 AGAAAA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4120499 293 -   9889416 I
e cebCap1.NW_016107322v1         7652263 284 +  14377064 I
e saiBol1.JH378168              10924095 285 -  13128814 I

a score=976737.000000
s hg38.chr14_GL000009v2_random    168809  98 +    201709 ATATTTCTTCTTTTGAAATGGTAAATTTTGATTATTAACTGATTAGTATAA----TCCCATAAAATAACAAAGTTTGAGCCCTATGATCTGTGTTTTAGGCT
s panTro5.chr9                  41858871  98 + 116767853 ATATTTCTTCTTTTGAAATGGTAAATTTTGAATATTAACTGGTTAGTATAA----TCCCATAAAATAACAAAGTTTGAGCCCTATGAACTGTGTTTTAGGCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820205  98 + 205426864 ATATTTCTTCTTCTGAAATGGTAAATTTTGAATATTAACTGGTTACTATAA----TCCCATAAAATAACAAAGTTTGAGTCCTATGAACTGTGTTTTAGGCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229677  98 +    245036 ATATTTCTTCTTTTGAAATGGTAAATTTTGAATATTAACTGGTTACTATAA----TCCCATAAAATAACAAAGTTTGAGTCCTATGAACTGTGTTTTAGGCT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105619  76 -  86207423 ATATTTCTTCTTTTGAAATGGTAAATTTTGAATATTAACTGGTTAGTATAA-----CCCATAAAATAA-------------CTATGAACTGTGT--------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261159  98 - 204787373 ATATTTTTTCTTTTGAAACAGTAAATTTTGAAGATTAACTGGTTAGTATAA----TCCCATAAAATAAGAAAGTTTGAGTCCTGTGAACTGTGTTTTTGGCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    160366  98 - 192460366 ATATTTTTTCTTTTGAAACAGTAAATTTTGAAGATTAACTGGTTAGTATAA----TCCCATAAAATAAGAAAGTTTGAGTCCTGTGAACTGTGTTTTTGGCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          179865  98 -  11645122 ATATTTTTTCTTTTGAAACGGTAAATTTTGAAGATTAACTGGTTAGTATAA----TCCCATAAAATAAGAAAGTTTGAGTCCTGTGAACTGTGTTTTTGGCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165135  98 -   6739814 ATATTTCTTCTTTTGAAACGGTAAATTTTGAAGATTAACTGGTTAGTATAA----TCCCATAAAATAAGAAAGTTTGAGTCCTGTGAACTGTGTTTTTGGCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    54888  98 - 101219884 ATATTTCTTCTTTTGAAACGGTAAATTTTGAAGATTAACTGGTTAGTTTAA----TCCCATAAAATAAGAAAGTTTGAGTCCTGTGAACTGTGTTTTTGGCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177318  98 -    785044 GTATTTCTTCTTTTGAAACGGTAAATTTTGAAGATTAACTGGTTAGTATAA----TCCCATAAAATAAGAAAGTTTGAGTCCTGTGAACTGTGTTTTTGGCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66367  98 -  10971483 ATATTTCTTCTTTTGAAACGGTAAATTTTGAAGATTAACTGGTTAGTATAA----TCCCATAAAATAAGAAAGTTTGAGTCCTGTGAACTGTGTTTTTGGCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10924380  98 -  13128814 ATATTTCTGCTTTTGAAATGGCAAATTTTGAATATTAACTGGTTAGTATAA----TCTCATAAAATAGCAAAATTTGAGTCCTGTGAACTGTGTTTTAGGCT
i saiBol1.JH378168             I 285 C 0
s cebCap1.NW_016107322v1         7652547  98 +  14377064 ATATTTCTGCTCTTGAAATGGTAAATTTTGAATATTAACTGGTTAGTATAA----TCCCATAAAATAACAAAGTTTGAGTCCTGTGAACTGTGTTTTAGGCT
i cebCap1.NW_016107322v1       I 284 C 0
s aotNan1.NW_018487195v1         4120792  98 -   9889416 ATATTTCTACTTTTGAAATGGTAAATTTTGAATATTAATTGGTTAGTATAA----TCCTATAAAATAACAAAGTTTGAGTCCTGTGAACTGTGTTTTAGGCT
i aotNan1.NW_018487195v1       I 293 C 0
s otoGar3.GL873528              20748586  98 +  38779656 GTATTTCTGCCTTTGAAATTACGATTTTTAAATATTGACTAATAAGTGTAA----TCCCACGAAACAACAAAGGTTGAGTCCTGTGGACTGTATGCTAAGTT
i otoGar3.GL873528             C 0 I 47
s canFam3.chr31                 28785425 101 -  39895921 ATG-TTCTGTTTTTGAAATTGTAAAATTTAAATATCGACTGATTAGTTTACTTACTCCCTTAAAATAACAAAGTTTGACCTAAGTGAGTTGTGTTTTATGCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6682899  85 +   6883506 --ATGATTGttttttaaattgtatatttt-----ttaataattGAGTGTAA----TGTCATAAAATGA----ATTTAACTCAGGTGAA--GTGTTTTATGCT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=294105.000000
s hg38.chr14_GL000009v2_random    168907 34 +    201709 AAAGTTGTGTTTTATGCTAAATCATCATTTACTC
s panTro5.chr9                  41858969 34 + 116767853 AAAGTTGTGTTTTATGCTAAATCATCATTTACTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820303 34 + 205426864 AAAGTTGTGTTTTATGCTAAATCATCATTTACTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229775 33 +    245036 AAAGTTGTG-TTTATGGTAAATTATCATTTACTC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105695 24 -  86207423 ----------TTTATGCTAAATCATCATTTACTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261257 34 - 204787373 AAAGTTGTGTTTTATGCTAAATCATCATTTACTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    160464 34 - 192460366 AAAGTTGTGTTTTATGCTAAATCATCATTTACTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          179963 34 -  11645122 AAAGTTGTGTTTTATGCTAAATCATCATTTACTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165233 34 -   6739814 AAAGTTGTGTTTTATGCTAAATCATCATTTACTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    54986 34 - 101219884 AAAGTTGTGTTTTATGCTAAATCATCATTTACTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177416 34 -    785044 AAAGTTGTGTTTTATGCTAAATCATCATTTACTC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66465 34 -  10971483 AAAGTTGTGTTTTATGCTAAACCATTATTTACTC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10924478 33 -  13128814 AAAGTTGTG-TTTATGCTAAATCATCATTTATTC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7652645 33 +  14377064 AAAGTTGTG-TTTATGCTAAATCATCATTTACTC
i cebCap1.NW_016107322v1       C 0 I 13
s aotNan1.NW_018487195v1         4120890 33 -   9889416 AAAGTTGTG-TTTATGCTAAATCATCATTTACTC
i aotNan1.NW_018487195v1       C 0 I 13
s canFam3.chr31                 28785526 33 -  39895921 AAAGTTGTA-CAGACTCTGCATCACTGTCCACTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6682984 31 +   6883506 TAATTTGCA-TGGAGTCTGAATCCCCATTCAC--
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20748684 47 +  38779656 I

a score=55126.000000
s hg38.chr14_GL000009v2_random    168941 13 +    201709 CGTGTATG-ATC----------tt
s panTro5.chr9                  41859003 10 + 116767853 CTTGCATG-At-------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820337 14 + 205426864 CTTGTATGTAtt----------tt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229808 13 +    245036 CTTGTATG-ATC----------tt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105719 23 -  86207423 CTTGTATG-ATCtttttttttttt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261291 13 - 204787373 CTTGTATC-Att----------tt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    160498 13 - 192460366 CTTGTATG-Att----------tt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          179997 13 -  11645122 CTTGTATG-Att----------tt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165267 13 -   6739814 CTTGTATG-Att----------tt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55020 13 - 101219884 CTTGTATG-Att----------tt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177450 13 -    785044 CTTGTATG-Att----------tt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66499 13 -  10971483 CTTGTATG-Att----------tt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10924511 13 -  13128814 TCTGTAAA-ATC----------AT
i saiBol1.JH378168             C 0 C 0
s canFam3.chr31                 28785559 13 -  39895921 CTCATATG-GTC----------TT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6683015  7 +   6883506 ------TA-ATC----------TT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4120923 13 -   9889416 I
e otoGar3.GL873528              20748684 47 +  38779656 I
e cebCap1.NW_016107322v1         7652678 13 +  14377064 I

a score=-1308.000000
s hg38.chr14_GL000009v2_random    168954 8 +    201709 --tttttttt
s panTro5.chr9                  41859013 4 + 116767853 ------tttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820351 8 + 205426864 --tttttttt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229821 8 +    245036 --tttttttg
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105742 8 -  86207423 --tttttttt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261304 6 - 204787373 --tc--tttt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    160511 3 - 192460366 --tc--t---
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180010 6 -  11645122 --tc--tttt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165280 6 -   6739814 --tc--tttt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55033 8 - 101219884 --tctttttt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177463 6 -    785044 --tc--tttt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66512 6 -  10971483 --tc--tttt
i colAng1.NW_012123820v1       C 0 C 0
s canFam3.chr31                 28785572 7 -  39895921 ---CTGTTTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6683022 8 +   6883506 ACTT--TCTT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4120923 13 -   9889416 I
e otoGar3.GL873528              20748684 47 +  38779656 I
e cebCap1.NW_016107322v1         7652678 13 +  14377064 I
e saiBol1.JH378168              10924524 0 -  13128814 C

a score=1276.000000
s hg38.chr14_GL000009v2_random    168962 1 +    201709 t-
s panTro5.chr9                  41859017 1 + 116767853 t-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820359 1 + 205426864 t-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229829 1 +    245036 t-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105750 1 -  86207423 t-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261310 1 - 204787373 t-
i rheMac8.chr2                 C 0 I 160
s macNem1.NW_012010856v1          180016 1 -  11645122 t-
i macNem1.NW_012010856v1       C 0 I 160
s cerAty1.NW_012001605v1          165286 1 -   6739814 t-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55041 1 - 101219884 t-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177469 1 -    785044 t-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66518 1 -  10971483 t-
i colAng1.NW_012123820v1       C 0 C 0
s canFam3.chr31                 28785579 2 -  39895921 TT
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4120923 13 -   9889416 I
e otoGar3.GL873528              20748684 47 +  38779656 I
e dasNov3.JH568778               6683030 0 +   6883506 C
e cebCap1.NW_016107322v1         7652678 13 +  14377064 I
e saiBol1.JH378168              10924524 0 -  13128814 C
e macFas5.chr2                    160514 0 - 192460366 C

a score=27517.000000
s hg38.chr14_GL000009v2_random    168963 15 +    201709 ----ttttt-----g-agacagagt
s panTro5.chr9                  41859018 15 + 116767853 ----ttttt-----g-agacagagt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820360 16 + 205426864 ----ttttt-----gtagacagagt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229830 15 +    245036 ----ttttt-----g-agacagagt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105751 15 -  86207423 ----ttttt-----g-agatggagt
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    160514 19 - 192460366 ----tttttg-gggg-ggacggagt
i macFas5.chr2                 C 0 C 0
s cerAty1.NW_012001605v1          165287 15 -   6739814 ----ttttt-----g-ggacggagt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55042 15 - 101219884 ----ttttt-----g-agacggagt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177470 15 -    785044 ----ttggg-----g-ggacagagt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66519 15 -  10971483 ---------tggggg-ggacagagt
i colAng1.NW_012123820v1       C 0 C 0
s canFam3.chr31                 28785581 19 -  39895921 CTAAGTTTA-----G-GGTAAGAGT
i canFam3.chr31                C 0 I 287
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261311 160 - 204787373 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4120923 13 -   9889416 I
e otoGar3.GL873528              20748684 47 +  38779656 I
e dasNov3.JH568778               6683030  0 +   6883506 C
e cebCap1.NW_016107322v1         7652678 13 +  14377064 I
e saiBol1.JH378168              10924524  0 -  13128814 C
e macNem1.NW_012010856v1          180017 160 -  11645122 I

a score=78304.000000
s hg38.chr14_GL000009v2_random    168978 26 +    201709 ctcacactgtcactcaggctggagtg
s panTro5.chr9                  41859033 26 + 116767853 cttgcactgtcactcaggctggaggg
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820376 26 + 205426864 ctcacacggttacccaggctggagta
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229845 26 +    245036 ctcacacggtcacccaggctggagtg
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105766 26 -  86207423 ctcacactgtcgcccaggctggagtg
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    160533 26 - 192460366 ctggctctgtggcccaggctggagtg
i macFas5.chr2                 C 0 C 0
s cerAty1.NW_012001605v1          165302 26 -   6739814 ctggctctgtgacccaggccggagtg
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55057 26 - 101219884 ctggctctgcggcccaggctggagtg
i chlSab2.chr22                C 0 I 159
s manLeu1.NW_012099043v1          177485 26 -    785044 ctggctctgtgacccaggctggagtg
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66534 26 -  10971483 ctggctctgtggcccaggccggagtg
i colAng1.NW_012123820v1       C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261311 160 - 204787373 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4120923 13 -   9889416 I
e canFam3.chr31                 28785600 287 -  39895921 I
e otoGar3.GL873528              20748684 47 +  38779656 I
e dasNov3.JH568778               6683030  0 +   6883506 C
e cebCap1.NW_016107322v1         7652678 13 +  14377064 I
e saiBol1.JH378168              10924524  0 -  13128814 C
e macNem1.NW_012010856v1          180017 160 -  11645122 I

a score=49936.000000
s hg38.chr14_GL000009v2_random    169004 23 +    201709 cagtggcacaatttcggcttatg
s panTro5.chr9                  41859059 23 + 116767853 cagtggcacaattttggcttact
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820402 23 + 205426864 cagtggtgcaattttggcttact
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229871 23 +    245036 cagtggtgcaattttggcttact
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105792 23 -  86207423 cagtggcatgattttggctcact
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    160559 22 - 192460366 -aggggcgccatcttggctccct
i macFas5.chr2                 C 0 C 0
s cerAty1.NW_012001605v1          165328 22 -   6739814 -agcggcgccatcttggctccct
i cerAty1.NW_012001605v1       C 0 C 0
s manLeu1.NW_012099043v1          177511 22 -    785044 -agcggcgccatcttggctccct
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66560 22 -  10971483 -agcggcgccatcttggctccct
i colAng1.NW_012123820v1       C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261311 160 - 204787373 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4120923 13 -   9889416 I
e canFam3.chr31                 28785600 287 -  39895921 I
e otoGar3.GL873528              20748684 47 +  38779656 I
e dasNov3.JH568778               6683030  0 +   6883506 C
e cebCap1.NW_016107322v1         7652678 13 +  14377064 I
e saiBol1.JH378168              10924524  0 -  13128814 C
e chlSab2.chr22                    55083 159 - 101219884 I
e macNem1.NW_012010856v1          180017 160 -  11645122 I

a score=85015.000000
s hg38.chr14_GL000009v2_random    169027 25 +    201709 gcaagctccgcctcccaggtgcaca
s panTro5.chr9                  41859082 25 + 116767853 gcaagctctgtctcccaggtgcaca
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820425 25 + 205426864 gcaagctccgcctcccaggttcaca
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229894 25 +    245036 gcaagctctgcctcccaggttcaca
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105815 25 -  86207423 gcaagctccacctcccggattcaca
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    160581 25 - 192460366 gcaagctccgccccccgggttcccg
i macFas5.chr2                 C 0 I 72
s cerAty1.NW_012001605v1          165350 25 -   6739814 acaagctccgccccccgggttcccg
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55242 25 - 101219884 gcaagctccgccccccgggttcccg
i chlSab2.chr22                I 159 C 0
s manLeu1.NW_012099043v1          177533 25 -    785044 gcaagctccgccccccgggttcccg
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66582 25 -  10971483 gcaagctccgccccccgggttcccg
i colAng1.NW_012123820v1       C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261311 160 - 204787373 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4120923 13 -   9889416 I
e canFam3.chr31                 28785600 287 -  39895921 I
e otoGar3.GL873528              20748684 47 +  38779656 I
e dasNov3.JH568778               6683030  0 +   6883506 C
e cebCap1.NW_016107322v1         7652678 13 +  14377064 I
e saiBol1.JH378168              10924524  0 -  13128814 C
e macNem1.NW_012010856v1          180017 160 -  11645122 I

a score=310536.000000
s hg38.chr14_GL000009v2_random    169052 65 +    201709 ccatcctcctgcttcagcct-cctgagtagctgggactacaggtgcccaccaccacacccagctaa
s panTro5.chr9                  41859107 65 + 116767853 ccattcccctgcttcagcct-cctgagtagctgggactacaggtgcccatcaccacacccagctaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820450 65 + 205426864 ccattctcctgcctcagcct-cctgagtagctgggactacaggtgcctgccaccatgcccggctaa
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229919 65 +    245036 ccattctcctgcctcagcct-cctgagtagctgggactacaggtgcctgccaccacgcccggctaa
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105840 64 -  86207423 ccattctcctgcctcagcct-cctgagtagctgggactacaggtg-ctgccaccatgcctggctaa
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261471 64 - 204787373 ccattctccggcttccgcct-cccgaggagctgggaccacaggcg-ccgccaccgcgcccggcTCA
i rheMac8.chr2                 I 160 C 0
s macFas5.chr2                    160678 64 - 192460366 ccattctccggcttccgcct-cccgaggagctgggaccacaggcg-ccgccaccgcgcccggctca
i macFas5.chr2                 I 72 C 0
s macNem1.NW_012010856v1          180177 64 -  11645122 ccattctccggcttccgcct-cccgaggagctgggaccacaggcg-ccgccaccgcacccggctca
i macNem1.NW_012010856v1       I 160 C 0
s cerAty1.NW_012001605v1          165375 65 -   6739814 ccattctccggcttccgcctccccgaggagctgggaccacaggcg-ccgccaccacgcccggctca
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55267 64 - 101219884 ccattctccggcttctgcct-ccagaggagctggaactacaggcg-ccgccaccacgcccggcTCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177558 64 -    785044 ccattctctggcttccgcct-cccgaggagctgggaccacaggcg-ccgccaccgcgcccggctca
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66607 64 -  10971483 ccattctcctgcctccgcct-cccgaggagctgggaccacaggcg-ccgccaccaggccaggctga
i colAng1.NW_012123820v1       C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4120923 13 -   9889416 I
e canFam3.chr31                 28785600 287 -  39895921 I
e otoGar3.GL873528              20748684 47 +  38779656 I
e dasNov3.JH568778               6683030  0 +   6883506 C
e cebCap1.NW_016107322v1         7652678 13 +  14377064 I
e saiBol1.JH378168              10924524  0 -  13128814 C

a score=288821.000000
s hg38.chr14_GL000009v2_random    169117 31 +    201709 ttgtttTTTAAGATTAAGGGTGAAATAAAAG
s panTro5.chr9                  41859172 31 + 116767853 ttgtttTTTAGGATTAAGGGTGAAATCAAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820515 31 + 205426864 ttgtttTTTAAGATTAAGGGCAAAATCAAAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          229984 31 +    245036 ttgtttTTTAAGATTAAGGGCAAAATCAAAG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105904 31 -  86207423 ttGCTTTTTAAGATTAAGGGCAAAATCAAAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261535 31 - 204787373 TTGCTTTTTAAGATTAAGGGCAAAATCAAAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    160742 31 - 192460366 ttGCTTTTTAAGATTAAGGGCAAAATCAAAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180241 31 -  11645122 ttGCTTTTTAAGATTAAGGGCAAAATCAAAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165440 31 -   6739814 ttGCTTTTTAAGATTAAGGGCAAAATCAAAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55331 31 - 101219884 TTGTTTTTTAAGATTAAGGGCAAAATCAAAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177622 31 -    785044 ttGCTTTTTAAGATTAAGGGCAATATTAAAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66671 31 -  10971483 ttGCTTTTTAAGATTAAGGGCAAAATCAAAG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10924524 31 -  13128814 TTGTTTTCTGAGATTAAGGACAAAATCAAAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7652691 31 +  14377064 TTGTTTTCTAAGATTAAGGGCAAAATCAAAG
i cebCap1.NW_016107322v1       I 13 C 0
s aotNan1.NW_018487195v1         4120936 31 -   9889416 TTGTTTTCTAAGATTAAGGGCAAAATCAAAG
i aotNan1.NW_018487195v1       I 13 C 0
s dasNov3.JH568778               6683030 31 +   6883506 ATGTTTTCTTAGTTTAGTGGCAGGCTGAAAG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28785600 287 -  39895921 I
e otoGar3.GL873528              20748684 47 +  38779656 I

a score=86210.000000
s hg38.chr14_GL000009v2_random    169148 9 +    201709 CTGCTCCCC--
s panTro5.chr9                  41859203 9 + 116767853 CTGCTCCCC--
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820546 9 + 205426864 GTGCTCCCC--
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230015 9 +    245036 ATGCTCCCC--
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105935 9 -  86207423 CTGCTCCCC--
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261566 9 - 204787373 CTGCTCCCC--
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    160773 9 - 192460366 CTGCTCCCC--
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180272 9 -  11645122 CTGCTCCCC--
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165471 9 -   6739814 CTGCTCCCC--
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55362 9 - 101219884 CTGCTCCCC--
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177653 9 -    785044 CTGCTCCTC--
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66702 9 -  10971483 CTGCTCCCC--
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10924555 9 -  13128814 CTGCTCCCC--
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7652722 9 +  14377064 CTGCTCCCC--
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4120967 9 -   9889416 CTGCTCCCC--
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28785887 9 -  39895921 CGACTCCCA--
i canFam3.chr31                I 287 C 0
s dasNov3.JH568778               6683061 9 +   6883506 --TCTCTCCGC
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           71266 2913 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20748684 47 +  38779656 I

a score=244409.000000
s hg38.chr14_GL000009v2_random    169157 25 +    201709 TATG----TTACATTCATAAATCAGAATT
s panTro5.chr9                  41859212 25 + 116767853 TATA----TTACATTCATAAATCAGAATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820555 25 + 205426864 TATA----TTACATTCATAAATAAGGATG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230024 25 +    245036 TATA----TTACATTCATAAATAAGGATG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105944 25 -  86207423 TATA----TTATATTCATAAACCAGAATG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261575 25 - 204787373 TATA----TTACATTCATGAATCAAAATG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    160782 25 - 192460366 TATA----TTACATTCATGAATCAAAATG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180281 25 -  11645122 TATA----TTACATTCATGAATCAAAATG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165480 25 -   6739814 TATA----TTACATTCATGAATCAAAATG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55371 25 - 101219884 TATA----TTACATTCATGAATCAAAATG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177662 25 -    785044 TATA----TTACATTCATGAATCAAAATG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66711 25 -  10971483 TATA----TTACATTCATGAATCAAAATG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10924564 29 -  13128814 TATATCACTCACATTCATGAATCAGGATG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7652731 29 +  14377064 TATATTACTCACATTTACGAATCAGCATG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4120976 23 -   9889416 TA------TCACATTCATGAATCAGGATG
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           74179 25 +   1229009 TATA----TTACACTCATGAATCAAAACA
i eulFla1.LGHW01000695v1       I 2913 I 3344
s canFam3.chr31                 28785896 25 -  39895921 GATA----TTTTAGTCACTAATCAGAATG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6683070 25 +   6883506 TATA----TTACACTCATGAATCAGCATA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20748684 47 +  38779656 I

a score=2336738.000000
s hg38.chr14_GL000009v2_random    169182 243 +    201709 ATTAAAGCAAGCTATTTATTTATTAGAAATACATACTCCAAATTTAGCATCTAAGACAT-GACAGCCTTTGAAGAGACATCAATTTACTTTT--TAGGGTCTATAGCTATATTTGTATTCATGTTATTGGTGTCCATAATATTTCATTAGATGTTCTAGGTAAATTGATAAATGAAAATAATGT--ATGTGATAA---------GGAGAACAACCTAGGT-CTC-CTGGAGGGCCCCTTACAACTCAGCTGTTGTTAGC
s panTro5.chr9                  41859237 243 + 116767853 ATTAAAGCAAGCTATTTATTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACAT-GACAGCCTTTCAAGAGATATCAATTTACTTTT--TAGGGTCTATAGCTATATTTGTATTCATGTTATTGGTGTCCATAATATTTCATTGGATGTTCTGGGTAAACTGATAAATGAAAATAATGT--ATGTGATAA---------GGAGAACAACCTAGGC-CTC-CTGGAGGGCCCCTTACAACTCAGCTGGTGTTAGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820580 243 + 205426864 ATTAAAGCAAGCTATTTATTTATTAGAAACACATACTCCAAATTTAGCGTCTAAGACAT-GACAGCCTTTCAAGAGACATCAATTTACTTTT--TAGTGTCTATAGCTATCTTTGTATTCATGTTATTGGTGTCCATAGTATTTCATTAGATGTTCTGGGTAAATTGATAAATGAAAATAATGT--ATATGATAA---------GGAGAACAACCTAGGC-CTC-CTGGAGGGCCCCTTACAACTCAGCTGGTGTTAGC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230049 242 +    245036 ATTAAAGCAAGCTATTTATTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACAT-GAC-GCCTTTCAAGAGACATCAATTTAATTTT--TAGTGTCTATAGCTATCTTTGTATTCATGTTATTGGTGTCCATAGTATTTCATTAGATGCTCTGGGTAAACTGATAAATGAAAATAATGT--ATATGATAA---------GGAGAACAACCTAGGC-CTC-CTGGAGGGCCCCTTACAACTCAGCTGTTGTTAGC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42105969 241 -  86207423 ATTAAAGCAAGCTATTTATTTATTAGAAGCACATATTCCAAATTTAGCATCTAAGACAT-GACAGCCTTTCAAAAGACATCAATTTACTTTT--TAGTGTCTATAGCTATGTTTGTATTCATGTTATTGGTGTCCATAATATTTCATTAGATGTTCTGGGCAAATCGATAAATGAAAATAATGT--ATATGATAA---------GGAGAACAATCTAGGC-CTC-CTGGA-GGCCCCTTACAACTCAGCTGGTG-AAGC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261600 243 - 204787373 ATTAAAGCAAGTTATTTACTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACAT-GACAGCCTTTCAAGAGACATCAATTTACTTTT--TAGTGTCTATAGCTGTATTTGTATTCATGTTATTGGTGTCCATAATATTTCATTAGATGTTCTGGCTAACTTGATAAATGAAAATAATGT--ATATGATAA---------GGAGAGCAACCCAGGC-CTC-CTGGAGGGCCCCTTACAACTCAGCTGGTGTTAGC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    160807 243 - 192460366 ATTAAAGCAAGCTATTTACTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACAT-GACAGCCTTTCAAGAGACATCAATTTACTTTT--TAGTGTCTATAGCTGTATTTGTATTCATGTTATTGGTGTCCATAATATTTCATTAGATGTTCTGGCTAACTTGATAAATGAAAATAATGT--ATATGATAA---------GGAGAGCAACCCAGGC-CTC-CTGGAGGGCCCCTTACAACTCAGCTGGTGTTAGC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180306 243 -  11645122 ATTAAAGCAAACTATTTACTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACAT-GACAGCCTTTCAAGAGACATCAATTTACCTTT--TAGTGTCTATAGCTGTATTTGTATTCATGTTATTGGTGTCCATAATATTTCATTAGATGTTCTGGCTAACTTGATAAATGAAAATAATGT--ATATGATAA---------GGAGAGCAACCCAGGC-CTC-CTGGAGGGCCCCTTACAACTCAGCTGGTGTTAGC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165505 243 -   6739814 ATTAAAGCAAGCTATTTATTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACAT-GACAGCCTTTCAAGAGACATCAATTTACTTTT--TAGTGTCTATAGCTGTATTTGTATTCATGTTATTGGTGTCCATAATATTTCATTAGATGTTCTGGCTAACTTGATAAATGAAAATAATGT--ATATGATAA---------GGAGAACAACCTAGGC-CTC-CTGGAGGGCCCCTTACAACTCAGCTGGTGTTAGC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55396 238 - 101219884 -TTAAAGCAAGC----TACTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACAT-GACAGCCTTTCAAGAGACATCAGTTTACTTTT--TAGTGTCTATAGCTGTATTTGTATTCATGTTATTGGTGTCCATAATATTTCATTAGATGTTCTGGGTAACTTGATAAATGAAAATAATGT--ATATGATAA---------GGAGAACAACCCAGGC-CGC-CTGGAGGGCCCCTTACAACTCAGCTGGTGTTAGC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177687 243 -    785044 ATTAAAGCAAGCTATTTATTTATTAGAAACACATACTCCAAACTTAGCATCTAAGACAT-GACAGCCTTTCAAGAGACATCAATTTACTTTT--TAGTGTCTATAGCTGTATTTGTATTCATGTTATTGGTGTCCATAATATTTCATTAGATGTTCTGGCTAACTTGATAAATGAAAATAATGT--ATATGATAA---------GGAGAACAACCCAGGC-CTC-CTGGAGGGCCCCTTACAACTCAGCTGGTGTTAGC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66736 243 -  10971483 ATTAAAGCAAGCTATTTATTTATTAGCAACACATACTCCAAATTTAGCATCTAAGACAT-GACAGCCTTTCAAGAGACATCAATTTACTTTT--TAGTGTCTGTAGCTGTATTTGTATTCATGTTATTGGTGTCCATAATATTTCATTAGATGTTCTGGGTAAATTGATAAATGAAAATAATGT--ATATGATAA---------GGAGAACAACCTAGGC-CTC-CTGGAGGGCCCCTTACAACTCAGCTGGTGTTAGC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10924593 239 -  13128814 ATTAAAGCAAACT----ATTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACAT-GGCAGCCTTTGAAAAGACATCAATTTATGTTT--TAGTACCCATAGCTATATGTTTATTCATGTTATTTATATCCATAATATTTCATTAAATATTCTGGGTAAATTGAGAAATGAAAATAACGT--ATAAGTGAA---------GGAGAACAGCCTAGGA-ACC-CTGGAGGGTCCCTtacaactcagctggtgttagc
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7652760 243 +  14377064 GTTAAAGCAAACTATTCATTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACAC-GACAGCCTTTGAAAAGACATTAATTTACATTT--TAGTACCCATAGCTATATGTTTACTCATGTTATTGGTATCTATAATATTTCATTAAATATTCTGGGTAAATTGATAAATAAAAATAATGT--ATAAGTTAA---------GGAGAACAGCCTAGGA-ACC-CTGGAGGGCCCTTTACAACTCAGCTGGTGTTAGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4120999 243 -   9889416 ATTAAAGCAAACTATTCATTTATTAGAAACACATACTCCAAATTTAGCATCTAAGACAT-GACAGCCTTTGAAAAGACATCAATTTACATTT--TAGTACCCATAGCTATATGTTTATTCATGTTATTGGTATCCATAATATTTCATTAAATATTCTGGGTAAATTGATAAATGAAAATAATGT--ATAAGTGAA---------GGAGAACAGCCCAGGA-ACC-CTGGAGGGCCCCTtacaactcagctggtgtcagc
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28785921 242 -  39895921 ATTAAAGCAAACTATCCACGTACTAGAAACATGTACTCCAAACTCAGCATCTAAGACGT-GGCAAGCTTTGAAaaggcaccaatttcatcttcatagcatttacatctatatttgcactcttatcattggtgtttataatatttaattaagttttgtatgtacagggataacagaaaatagtct--atatacaat---------gaggaataaagtatgcgctg-ttagtaaacc---tacaactcagc-ggtattggc
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6683095 250 +   6883506 TTTAAAGCAAACTACTCATTTATTAGAAACACATCTTTCAGATTCAGCATCTACGACATGGAGAGCTTTTAAAAATGCAGcaatttagtcttcatagtatctaaaactcaatttgcactc-----atttgtgcccgtagtgtttaattaaattttgtgtgtacaatggcaaattcaaattgtgtagatatgttgaacatatgttgcagaagagtctcgac-accactggtatatc---tatatctcagttggtgggtgc
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20748684  47 +  38779656 I

a score=198238.000000
s hg38.chr14_GL000009v2_random    169425 18 +    201709 AGAAATGCCTGGGTGTAA
s panTro5.chr9                  41859480 18 + 116767853 AGAAATGCCTGGGTGTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820823 17 + 205426864 AGAAATGCC-GGGTGCAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230291 17 +    245036 AGAAATGCC-GGGTGTAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42106210 18 -  86207423 AGGAATGCCTGGGTGTAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261843 18 - 204787373 AGAAATGCCTGGGTGTGA
i rheMac8.chr2                 C 0 I 7
s macFas5.chr2                    161050 18 - 192460366 AGAAATGCCTGGGTGTGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180549 18 -  11645122 AGAAATGCCTGGGTGTGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165748 18 -   6739814 AGAAATGCCTGGGTGTGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55634 18 - 101219884 AGACATGCCTGGGTGTGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177930 18 -    785044 AGAAATGCCTGGGTGTGA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66979 18 -  10971483 AGACATGCCTGGGTGTAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10924832 18 -  13128814 agaaatgccggggtgtaa
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653003 18 +  14377064 AGAAATGCCAGGGTGTAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4121242 18 -   9889416 agaaatgccagggtgtaa
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20748731 18 +  38779656 AAAAATGCCTGGATACAA
i otoGar3.GL873528             I 47 C 0
s canFam3.chr31                 28786163 18 -  39895921 agaagtgtcagggtataa
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6683345 18 +   6883506 agaaatgtctgggtgtaa
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=21692.000000
s hg38.chr14_GL000009v2_random    169443 5 +    201709 CAGTG
s panTro5.chr9                  41859498 5 + 116767853 CAGTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820840 5 + 205426864 TGGTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230308 5 +    245036 TGGTG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42106228 5 -  86207423 TAGTG
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    161068 5 - 192460366 TCAGC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180567 5 -  11645122 TCGGG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165766 5 -   6739814 TCGGG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55652 5 - 101219884 TCGGG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177948 5 -    785044 TCGGG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           66997 5 -  10971483 TCGTG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10924850 5 -  13128814 tagtg
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653021 5 +  14377064 TGGTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4121260 5 -   9889416 tagtg
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20748749 5 +  38779656 CAGTA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28786181 5 -  39895921 taggg
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6683363 5 +   6883506 tagtg
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261861 7 - 204787373 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=-5345.000000
s hg38.chr14_GL000009v2_random    169448 14 +    201709 AG---AAACAACCTTTC-
s panTro5.chr9                  41859503 14 + 116767853 AG---AAACAACCTTTC-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820845 14 + 205426864 AG---AAACAACCTTTC-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230313 14 +    245036 AG---AAACAACCTTTC-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42106233 14 -  86207423 AG---AAACAACCTTTC-
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    161073  2 - 192460366 AG----------------
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180572  2 -  11645122 AG----------------
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165771  2 -   6739814 AG----------------
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55657  2 - 101219884 AG----------------
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177953  2 -    785044 AG----------------
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           67002  5 -  10971483 AGAAA-------------
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10924855 14 -  13128814 ag---aaaccACCTTTC-
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653026 14 +  14377064 AG---AAACCACCTTTC-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4121265 14 -   9889416 ag---aaaccACCTTTC-
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20748754 14 +  38779656 AG---AGGCCTACTGGC-
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6683368 15 +   6883506 ag---aaatcagccaacc
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e rheMac8.chr2                 204261861  7 - 204787373 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28786186  0 -  39895921 C

a score=1138510.000000
s hg38.chr14_GL000009v2_random    169462 139 +    201709 AAAAGTATTGAGCAATTTTTCAGGCAGAGGAATATGTATGCCAATCCAGGCAGCAAGATAAGTGGAGGTCAGTTAAAAGATCAGTG-TGTGATTACA-GTTTTTTTTT---AGGTTTCTACTCAGAGGAAATATAACACTCAGT
s panTro5.chr9                  41859517 141 + 116767853 AAATGTGTTGGGCAATTTTTCAGGCAGAGGAATATGTATGCCAATCCAGGCGGGAAGATAAGTGGAGGTCAGTTAAAAGATCAGTG-TGTGATTACA-TTTTTTTTTTT-TATGTTTCTACTGAGAGGAAATATGACACTCAGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820859 139 + 205426864 AAAAGTGTTGAGCAGTTTTTCAGGTAGAGGAATATGTATGCCAATCCAGGCAGCAAGATAAGTGGAGGTCAGTTAAAAGATCAGGC-TGTGATTACACGTTATTTTTT---AGGTTTTTACTGAGAGGAAATATAACACTCAG-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230327 139 +    245036 AAAAGTGTTGAGCAGTTTTTCAGGCAGAGGAATATGTATGCCAATCCAGGCAGCAAGATAAGTGGAGGTCAGTTAAAAGATCAGGC-TGTGATTACACGTTATTTTTT---AGGTTTCTACTGAGAGGAAATATAACACTCAG-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42106247 140 -  86207423 AAACGTGTTGGGCA-CTTTTCAGGCAGCGGAATATGTATGCCAATCCAGGCAGCAAGATAAGTGGAGGCCAGTTAAAAGATCAGGT-TGTGATTACACGTTTTTTGTTTGTTTGTTTCTACT--GAGGAAATATAACACTTAGT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204261868 141 - 204787373 AAAAGTGTAGAGCAGTGTTTCAGGCAGAGGAGTATGTATGCCAATCCGGGGAGCAAGGTAGGTGGAGGCCACTTAAAAGTTCAGGTATGTGATTACACGTTTCTGTTT---AGGTTTCTACTGAGAGGAAATATAACACTCGGT
i rheMac8.chr2                 I 7 C 0
s macFas5.chr2                    161075 141 - 192460366 AAAAGTGTAGAGCAGTGTTTCAGGCAGAGGAGTATGTATGCCAATCCGGGGAGCAAGGTAGGTGGAGGCCACTTAAAAGTTCAGGTATGTGATTACACGTTTGTGTTT---AGGTTTCTACTGAGAGGAAATATAACACTCGGG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180574 141 -  11645122 AAAAGTGTAGAGCAGTGTTTCAGGCAGAGGAGTATGTATGCCAATCCAGGGAGCAAGGTAGGTGGAGGCCACTTAAAAGTTCAGGTATGTGATTACACGTTTCTGTTT---AGGTTTCTACTGAGAGGAAATATAACACTCGGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165773 141 -   6739814 AAAAGTGTAGAGCAGTGTTTCAGGCAGAGGAGTATCTATGCCAATCCGGGGAGCAAGGTAGGTGGAGGCCACTTAAAAGTTCAAGTATGTGATTACACGTTTGTGTTT---AGGTTTCTACTGAGAGGAAATATAACACTCGGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55659 141 - 101219884 AAAAGTGTAGAGCAGTGTTTCAGGCCGAGGAGGATGTATGCCAATCCGGGGAGCAAGGTAGGTGGAGGCCACTTAAAAGTTCAGGTATGTGATTACACGTTTGCGTTT---AGGTTTCTACGGAGAGGAAATATAACACTCGGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          177955 141 -    785044 AAAAGTGTAGAGCAGTGTTTCAGGCAGAGGAGTACGTATGCCAATCCGGGGAGCAAGGTAGGTGGAGGCCACTTAAAAGTTCAGGTATGTGATTACACGTTTGTGTTT---AGGTTTCTACTGAGAGGAAATATAACACTCGGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           67007 137 -  10971483 ---AGTGTAGAGCAGTGTTTCAGGCAGAGGAGTATGTCTGCCAATCCGGGGAGCAAGGTAGGGGGAGGTCACTTAAAAGTTCAGGTATGTGATGACACGTTTGTGTTT---AGG-TTCTACTGAGAGGAAATATAACACTCGGT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10924869 140 -  13128814 AAAAGCGTTGAGCAATTTTTCTGGCAGAGGAGTGTGTATGCCAATCCAGGGAGCTAGATACGTAGAGATCTGTTAAAAGATCAGGTATGTGATTACAAGTTTTTCTT----AGGTTTCTGCTGAGAGGAAATATAACACAAAGT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653040 140 +  14377064 AAAAGTGTTGAGCAATTTTTCTGGCAGAGGAGTATGTATGCCAATCCAGGGAGCTAGATAAATAGAGATCTGTTAAAAGATCAGGTACATGATTACAAGTTTTTCTT----AGGTTTCTACTGAGAGGAAATATAACACAAAGT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4121279 140 -   9889416 AAAAGTGTTGAGCAATTTTTCTGGCAGAGGAGTATGTATGCCAATCCAGTGAGCTAGATAAGTAGAGATCTGTTAAAAGATCAGGTATGTGATTACAAGTTTTTCTT----AGGTTTCTACTGAGAGGAAATATAACACAAAGT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20748768 134 +  38779656 CAAAGTGTTGAAAAGGTTTTTAAGCAGAAGAGTGTGTCTGCTAATCCAGGGAGCAAGTTAAATGGAGATCAGTTAAAAGATCAAGTATTTGATTATAAGTTTTGCTT----AGGTTTCTACTAGGAAGAAAATCTACA------
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6683383 128 +   6883506 aagagtgttgagAACTTTTACAGGAAGAAGAGT-TGCATGTTAATCTAGGGAGCAATGTAAG--GAGGTCATTTACATGAGCAAGTATTTGTTTAC----------TT---AGGTTTCTAGTATGAAGAAATACAATGCTCCAC
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28786186   0 -  39895921 C

a score=1030959.000000
s hg38.chr14_GL000009v2_random    169601 124 +    201709 TATTATTTTCTCCACATATCTCT-GGTTATT-----TTGTCAC-AACCTTTTATGT--AAGCTACTAC----------CAAACACTGGGTTATCCAAGATCTA-TGGGTCGTATTCAATATTTGCTTTTCCCTCAACTAC------------------------------------TA-AC-----------------------
s panTro5.chr9                  41859658 124 + 116767853 TATTATTTTCTCCGCATACCTCT-GGTTATT-----TTGTCAC-AACTTTTTATGT--AAGCTATTAC----------CAAACACTGGGTTATCCAAGATCTG-TGGGTCGTATTCAATATTTGCTTTTCCCTCAACTAC------------------------------------TA-AC-----------------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77820998 122 + 205426864 --TTATTTTCTCCGTATATCTCT-GGTTATT-----TTGTCAC-AACCTTTTATGT--AAGCTGCTAC----------CAAACGCTGGGTTATCCAAGATCTG-TGGGTCGTATTCAATATTTGCTTTTCCCTCAACTAC------------------------------------TA-AC-----------------------
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230466 122 +    245036 --TTATTTTCTCCGTATATCTCT-GGTTATT-----TTGTCAC-AACCTTTCATGT--AAGCTGCTAC----------CAAACGCTGGGTTATCCAAGATCTG-TGGGTCGTATTCAATATTTGCTTTTCCCTCAACTAC------------------------------------TA-AC-----------------------
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42106387 122 -  86207423 TATTATTTTCTCCATCTATCCC---GCTATT-----TTGTCAA-AACCTTTCATGT--AAGTTACTAC----------CAAACACTGGGTTATCCAAGATCTG-TGGGTCGTATTCAATATTTGCTTTTCCCTCAACTCC------------------------------------TA-AC-----------------------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262009 125 - 204787373 GATTGTTTTCTCCGTATGTCTCT-GGCTGTT-----TTGTCAC-AACC-TTTACGTAAAAGCTGCTAC----------CAAACACAGGGTTATCCAAGATCTG-TGGGTCATCTTCAATGTTTGCTTTTCCCCCAACTCC------------------------------------TA-AC-----------------------
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    161216 125 - 192460366 GATTGTTTTCTCCGTATGTCTCT-GGCTGTT-----TTGTCAC-AACC-TTTACGTAAAAGCTGCTAC----------CAAACACAGGGTTATCCAAGATCTG-TGGGTCATCTTCAATGTTTGCTTTTCCCCCAACTCC------------------------------------TA-AC-----------------------
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180715 126 -  11645122 GATTGTTTTCTCCGTATGTCTCT-GGCTGTT-----TTGTCAC-AACCTTTTACGTAAAAGCTGCTAC----------CAAACACAGGGTTATCCAAGATCTG-TGGGTCATCTTCAATGTTTGCTTTTCCCCCAACTCC------------------------------------TA-AC-----------------------
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          165914 125 -   6739814 GATTGTTTTCTCCGTATATCTCT-GGCTATT-----TTGTCAC-ACCG-TTTACATAAAAGCTGCTAC----------CAAACTCAGGGTTATCCAAGATCTG-TGGGTCATCTTCAATGTTTGCTTTTCCCCCAACTCC------------------------------------TA-AC-----------------------
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55800 126 - 101219884 GATTGTCTTCTCCGTATATCTCT-GGCTATT-----TTGTCACAACCT-TTTACGTAAAAGCTGCTAC----------CAAACACTGGGTTATCCAAGAGCTG-TGGGTCATCTTCAATGTTTGCTTTTCCCCCAACTCC------------------------------------TA-AC-----------------------
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          178096 125 -    785044 GATTGTTTTCTCCGTATATCTCT-GGCTATT-----TTGTCAC-ACCT-TTTACATAAAAGCTGCTAC----------CAAACACAGGGTTATCCAAGATCTG-TGGGTCATCTTCAATGTTTGCTTTTCCCCGAACTCC------------------------------------TA-AC-----------------------
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           67144 126 -  10971483 GATTATTTTCTCCGTATATCTCT-GGCTATT-----TTGTCAC-AACCTTTTACGTAAAAGCTGCTAC----------CAAACACTGGGTTATCCAAGATCTG-TGGGTCATCTTCAATGTTTGCTTTTCCCCCAACTCC------------------------------------TA-AC-----------------------
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925009 125 -  13128814 GATTTTTTTCTCCTTATATCTCTAGGCTATT-----TTGTTTT-AACCTTTTATGT--AAGCTACTAC----------CAACCCCTGGGTTATCCAGGATCTA-TGGGTCATATTCAATATTTGCTTTTCCCTCAACTCC------------------------------------TA-AC-----------------------
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653180 125 +  14377064 GATTATTTTCTCCTTATATCTCTAGGCTATT-----TTGTTTC-ACCCTTTTATGT--AAGCTACTGC----------CAACCACTGGGTTATCCAGGATCTA-TGGGTCGTATTCAATATTTGCTTTTCCCTAAACTCC------------------------------------TA-AC-----------------------
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4121419 124 -   9889416 GATTATTTTCTACTTGTATCTCTAGGCTATT-----TTTTCTC-AACCTTTTATGT--AAGCTACTAC----------CAACCGCT-GGTTATCCAGGATCTA-TGGGTCGTATTCAATATTTGCTTTTCCCTCAACTCC------------------------------------TA-AC-----------------------
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20748902 130 +  38779656 ----GTCTTCTCCTTTCATCTCT-GGTTACT-----ATGTCTC-AAATTTTTGCAT--AGGTTGCCTCACAGCGTAGTCAAGATCTGGGTGAATTGAGATCTATTGGATCATATTTCACATATAATTTTTCTTC-ACCCC------------------------------------CA-AC-----------------------
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28786186 128 -  39895921 TATAATGATCTCTTTATCTCTTT-GGCTATTATTACTTGTT---AACATTTTGTGA--AAACTACTAG----------CAGGCACTGTTTCATCCAAGAGTTA-TGGGTCATACTCAACATTGATTTTTTTCAGTACCCC------------------------------------AATGC-----------------------
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6683511 178 +   6883506 --GCAATTTCTCCTTAACTGTCTGGGATGTT-----CT----C-AATATTTTATGA--AGGTTACCAT----------CAGCCACTGGGTTATCCAGGATTTA-TGGGTCATATGAATTATTTACTTTTTCATCAACCCCATTACATGTGTGTTCGCCAGACCCTTAACTTCTCTATA-ACCCTTTTTATCCACATCTACTGAC
i dasNov3.JH568778             C 0 I 193
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=34162.000000
s hg38.chr14_GL000009v2_random    169725  4 +    201709 AC-------GT
s panTro5.chr9                  41859782  4 + 116767853 AC-------GT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821120  4 + 205426864 AC-------AT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230588  4 +    245036 AC-------GT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42106509  4 -  86207423 AC-------AT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262134  4 - 204787373 AC-------GT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    161341  4 - 192460366 AC-------GT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180841  4 -  11645122 AC-------GT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166039  4 -   6739814 AC-------GT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55926  4 - 101219884 AC-------GT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          178221  4 -    785044 AC-------GT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           67270  4 -  10971483 AC-------GT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925134  4 -  13128814 AC-------AT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653305  4 +  14377064 AC-------AT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4121543  4 -   9889416 AC-------GT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20749032 11 +  38779656 ACAGGACCTAT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28786314  4 -  39895921 AC-------AT
i canFam3.chr31                C 0 I 279
s dasNov3.JH568778               6683882  4 +   6883506 AA-------AT
i dasNov3.JH568778             I 193 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=223607.000000
s hg38.chr14_GL000009v2_random    169729 19 +    201709 TTGATTCCCTTTGTAACTT
s panTro5.chr9                  41859786 19 + 116767853 TTGATTCCCTTTGTAACTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821124 19 + 205426864 TTGATTCCCTTTGTAACTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230592 19 +    245036 TTGATTCCCTTTGTAACTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42106513 19 -  86207423 TTGATTCCGTTTGTAACTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262138 19 - 204787373 TTGATTCCCTTTGTAACTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    161345 19 - 192460366 TTGATTCCCTTTGTAACTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180845 19 -  11645122 TTGATTCCCTTTGTAACTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166043 19 -   6739814 TTGATTCCCTTTGTAACTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55930 19 - 101219884 TTGATTCCCTTTGTAACTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          178225 19 -    785044 TTGATTCCCTTTGTAACTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           67274 19 -  10971483 TTGATTCCCTTTGTAACTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925138 19 -  13128814 TTGATTCATTTTGTAACTC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653309 19 +  14377064 TTGATTCcctttgtaactt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4121547 19 -   9889416 Ttgattccctttgtaactt
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20749043 19 +  38779656 TTAATTTCCCTTGTGGTCT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28786597 19 -  39895921 TTAATTTCCTTCATAGCCT
i canFam3.chr31                I 279 C 0
s dasNov3.JH568778               6683886 19 +   6883506 TTAATTCCTATTGCAGCTT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=2320304.000000
s hg38.chr14_GL000009v2_random    169748 250 +    201709 TC----TCCCCTATTTCTCCTTTCAACCTGTTTTCTCCAACCACACTGAGTTAATAAGCCT-CCTATATACTCTCATACCCTGTTTTA-T-----------------CTAAAGAGATTTCCTTTTTCTACTATTTTACCCATCTCATTCCTTAATTTATTTCTTCTTATTTCTCTCTCTA--TTTTTTACtcttttaggcacagctcatgtctcatgactttcaaaaagtttttcttc-gatattcccagctcgaattaggtacatcccaatcagt
s panTro5.chr9                  41859805 251 + 116767853 TC----TCCCCTATTTCTCCTTTCAACCTGTTTTCTCCAACCACACTGAGTTAATAAGCCT-CCTATGTACTCTCATACCCTGTTTTA-T-----------------CTAAAGAGATTTCCTTTTTCTACTATTATACCCATCTCATTCCCTAATTTATTTCTTCTTATTTCTCTCTCTA--TTTTTTATtcttttaggcacagctcatgtctcatgactttcaaaaagtttttcttctgatattcccagctcgaattaggtacatcccaatcagt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821143 269 + 205426864 TC----TCCCCTATTTCTCCTTTCAACCTGTTTTCTCAAACCTCAGTGAGTTAATGAGCCTCCCTGTATACTCTCATACCCTGTTTCA-TCTCTAAGCTCCCTTGACCTGAAGAGATTTCCTTTTCCTACTAGTATAGTCATCTCATTCCCTAATTTATTTCTTCTTATTTCTCTCTATA--TTTTTTATtcttttaggcacagctcatgcctcatgactttcaaaaagtttttcttctgatattcccagcttgaattaggtatatcctaatcagt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230611 269 +    245036 TC----TCCCCTATTTCTCCTTTCAACCTGTTTTCTCAAACCTCACTGAGTTAATGAGCCTCCCTGTATACTCTCATACCCTGTTTCA-TCTCTAAGCTCCCTTGACCTGAAGAGATTTCCTTTTTCTACTAGTATAGTCATCTCATTCCCTAATTTATTTCTTCTTATTTCTCTCTATA--TTTTTTATtcttttaggcacagctcatgtctcatgactttcaaaaagtttttcttctgatattcccagcttgaattaggtatatcctaatcagt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42106532 265 -  86207423 TC----TCCC--GTTTCTCCTTTCAGCCTGTTTTCTCCAACCACACTGAGTTTATGAGCCTCTCTATGTACTCTCACACC--GTTTCA-TCTCTAAGCTCCCTTGACCTAAAGAGATTTCCTTTTTCTACTATTGTACTCACCTCATTCCCTAATTTATTTCGTGTTATTTCTCCCTATA--TTTTTTATtcttttaggcacagctcatgtctcatgactttcaaaaagtttttcttgtgatattcccagctcgaattaggtacatcctaatcagt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262157 269 - 204787373 TC----TCCCCTATTTCTCCTTTCAACCCGTTTTCTCCAACCGCACTGAGTTAGTGAGTCTCCCTGTATACTCTCATACCCTGTTTCA-TCTCTCAGCGCCCTTGACCTAAAGAGATCTCCTTTTTCTACTCTTATACGCATCTCATTCCCTAATTTATTTCTTTTTGTTTCTCTCTATA--TTTTTTATTCTTTTAGGCACAGCTCATGTCTCGTGACTTTCAAAAAGCTTTTCTTCTGATATTCCCAGCTTGAATTAGGTGCATCCTAATCCGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    161364 269 - 192460366 TC----TCCCCTATTTCTCCTTTCAACCCGTTTTCTCCAACCGCACTGAGTTAGTGAGTCTCCCTGTATACTCTCATACCCTGTTTCA-TCTCTCAGCGCCCTTGACCTAAAGAGATCTCCTTTTTCTACTCTTATACGCATCTCATTCCCTAATTTATTTCTTTTTGTTTCTCTCTATA--TTTTTTATTCTTTTAGGCACAGCTCATGTCTCGTGACTTTCAAAAAGCTTTTCTTCTGATATTCCTAGCTTGAATTAGGTGCATCCTAATCCGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          180864 269 -  11645122 TC----TCCCCTATTTCTCCTTTCAACCCGTTTTCTCCAACCGCACTGAGTTAGTGAGTCTCCCTGTATACTCTCATACCCTGTTTCA-TCTCTCAGCGCCCTTGACCTAAAGAAATCTCCTTTTTCTACTCTTATACGCATCTCATTCCCTAACTTATTTCTTTTTGTTTCTCTCTATA--TTTTTTATTCTTTTAGGCACAGCTCATGTCTCGTGACTTTCAAAAAGCTTTTCTTCTGATATTCCCAGCTTGAATCAGGTGCATCCTAATCCGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166062 269 -   6739814 TC----TCCCCTATTTCTCCTTTCAACCCGTTTTCTCCAACCGCACTGAGTTAGTGAGTCTCCCTGTATACTCTCAAACCCTGTTTCA-TCTCTCAGCGCCCTTGACCTAAAGAGAGCTCCTTTTTCTACTCTTATACGCATCTCATTCCCTAATTTATTTCTTTTTATTTCTCTCTATA--TTTTTTATTCTTTTAGGCACAGCTCATGTCTCGTGACTTTCAAAAAGCTTTTCTTCTGATATTCCCAGCTTGAATTAGGTACATCCTAATCCGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    55949 265 - 101219884 TC----TCCCCTATTTCTCCTTTCAACCCATTTTCTCCAACCGCACTG-GTTAGTGAGTCTCCCTGTATACTCTCATACCCTGTTTCA-TCTCTCAGCGCCCTTGACCTAAAGAGAT---CTTTTTCTACTCTTATACGCATCTCATTCCCTGATTTATTTCTTTTTATTTCTCTCTATA--TTTTTTATTCTTTTAGGCACAGTTCATGTCTCGTGACTGTCAAAAAGCTTTTCTTCTGATATTCCCAGCTTGAATTAGGTACATCCTAATCAGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          178244 269 -    785044 TC----TCCCCTATTTCTCCTTTCAACCCGTTTTCTCCAACCGCACTGAGTTAGTGAGTCTCCCTGTATACTCTCATACCCTGTTTCA-TCTCTCAGCGCCATTGACCTAAAGAGATCTCCTTTTTCTACTCTTATACGCATCTCATTCCCTAATTTATTTCTTTTTATTTCTCTCTATA--TTTTTTATTCTTTTAGGCACAGCTCATGTCTCGTGACTTTCAAAAAGCTTTTCTTCTGATATTCCCAGCTTGAATTAGGTAAATCCTAATCCGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           67293 267 -  10971483 TC----TCCCC-ATTTCTCCTTTCAACCCGTTTTCTTCAACCGCACTG-GTTAGTGAGTCTCCCTGTATACTCTCATACCCTGTTTCA-TCTCTCAGCGCCCTTGACCTAAAGAGATCTCCTTTTTCTACTCTTATACGCATCTGATTCCCTAATTTATTTCTTTTTATTTCTCTCTATA--TTTTTTATtcttttaggcacagctcatgtctcgtgactttcaaaaagcttttcttttgatattcccagcttgaattaggtacatcctgatcagt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925157 269 -  13128814 CCCCCAcccaccatttccccttt-aacctgttttctccaactacattgagtgaatgag----cctatatactctcatattctctctca-tctctaagctctcctgacctaaagagatttcctttttctgctgttatacccatctcattccctaatttatttctttttatttctctccatattttttttattcttttgggcacagctcatgtatcaccactttcaaaaagttttt-ttctgatattcccagcttgaattatgtacatcctaattaga
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653328 259 +  14377064 tc----tcccccatttctccttt-aacctgttttctccaactacattgagtgaatgagcctccctatatactctcatat--tctctca-tctctaagctctcctgacct--agagatttcctttttctgctattacacccatctcattccctaatttatttctttttatttctctc------tcttttattcttttgggcacagctcatgtatcaccactttcaaaaagctttt-ttctgatattcccagcttgaattatgtacatcctaattagt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4121566 261 -   9889416 tc----tcccccatttctccttt-aacctgttttctccaactacattgagtgaatgagcctccctatatactctcatattctctctca-tctctaagctctcctgacctaaagagatttcctttttctactattatacccatctaattccctaatt------tttttatttctctttata--ttttttattcttttgggcacagctcatatatcaccactttcaaaacattttt-ttctgatattccaagcttgaattatgtacatcctaattagt
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28786616 255 -  39895921 TT----ATTCCTGCCTTTCCTTTCATACCATTTTCTCCAACCTTAGTGAGGCAATGAATCTT------TGTTCTCATGGCTTCTCTCA-TCTCCAAGTTC-CTTGGCCTGAAGAGATATCCTTTACCTACCATCATAACTATATCATCCTCTAATTTACTTTTATTTATTTCTATTTT----TTTTTCATTCTTCTGGGCATAGTGTA-GTATAACTACTTTCAAAG----TTTTCTCTGATATTCTCAGTCTGAATTAGGCATATGTAGATGAAC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6683905 251 +   6883506 TC----TCTCCCACATCTTCTTTCATACCCTTTTCTCTAACTGCATTGAGACAGTGAAAGTCCCTAGACACTctcaggtcttatggcactctccaagctcccttggcctgaagggactttccttctctactctcacacccatctcttcctccaaattatt--------------cttatg--tttttaattcttctgggcaca-ctca-atatcacctctttcaaata---cttgccctgatgttcccaaattgaattaggcacattctcatcggc
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22689391 7604 -  98207768 I
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20749062   0 +  38779656 C

a score=622684.000000
s hg38.chr14_GL000009v2_random    169998 68 +    201709 -ttccttagacttacaagtctgcatattattggcttg-caatctgtcttaggctgggaattag------ctccttg
s panTro5.chr9                  41860056 68 + 116767853 -ttccttagacttacatctctgcatattattggcttg-caatctgtcttaggctgggaattag------ctccttg
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821412 68 + 205426864 -ttccttagacttaccactctgcatattatttgcttg-caatctgtcttaggctgggaattag------ctgcttg
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230880 68 +    245036 -ttccttagacttaccactctgcatattatttgcttg-caatctgtcttaggctgggaattag------ctgcttg
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42106797 68 -  86207423 -ttccttagactcaccactctgcgtattagttgcttg-cagtctgtcttaggctgggaattag------ctgcttg
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262426 66 - 204787373 -TTCCTTAGACTTACCACTCTGCATATTATTTGCTTG-CAATC--TCTTAGGCTAGGAATTAG------CTCCTTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    161633 66 - 192460366 -TTCCTTAGACTTACCACTCTGCATATTATTTGCTTG-CAATC--TCTTAGGCTAGGAATTAG------CTCCTTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181133 66 -  11645122 -TTCCTTAGACTTACCACTCTGCATATTATTTGCTTG-CAATC--TCTTAGGCTAGGAATTAG------CTCCTTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166331 66 -   6739814 -TTCCTTAGACTTACCACTCTGCATATTATTTGCTTG-CAATC--TCTTAGGCTAGGAATTAG------CTCCTTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56214 68 - 101219884 -TTCCTTAGACTTACCACTCTGCATATTATTTGCTTG-CAATCTGTCTTAGGCTGGGAATTAG------CTCCTTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          178513 66 -    785044 -TTCCTTAGACTTACCACTCTGCATATTATTTGCTTG-CAATC--TCTTAGGCTAGGAATTAG------CTCCTTG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           67560 68 -  10971483 -ttccttagactaaccactctgcatattatttgcttg-caatctgtcttaggctgggaatgca------ctccttg
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925426 68 -  13128814 -tttcttagatttactgctctgcatacaatttgcctg-cagtctgtcttaggctgggaattag------ccccttg
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653587 68 +  14377064 -tttcttagatttaccactctgcatacaatttgcctg-caatctgcattaggctgggaatcag------ccccttg
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4121827 68 -   9889416 -tttcttagatttaccactctgcatacaatttgcctg-caatctgtcttaggctgagaattag------ctccttg
i aotNan1.NW_018487195v1       C 0 C 0
s mm10.chr16                    22696995 69 -  98207768 -TTCTTTAAA--TGCAAAATTGCAGATTATTCTCTT--CACTC--TCTTAGTCTGGAAATTTGTGTTTTCTTTTTG
i mm10.chr16                   I 7604 I 9
s canFam3.chr31                 28786871 67 -  39895921 -TTCTGGAGATTTACTCTTTTGCAATTTGCTTGTTTGTCAGTG--CATTAGGCTAGAAACTAG------CTCCCTA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684156 68 +   6883506 ttcccttcacttaaccgctctgtttcttacttgcttg-t-ctccgtactggggtgggaacgaa------ctcctta
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30865108 1476 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20749062  0 +  38779656 C

a score=1406901.000000
s hg38.chr14_GL000009v2_random    170066 144 +    201709 taggcaggggctagaatttatttcctctt--atgtccataatgcctgacacaggaactATTCTCACATACAAATTGTAGGGCCATAATTCCTGAGAACATATGTATATTTTAGTGACTCAT----------------AAAGGCTTGAAATACATTT-TTAAAA
s panTro5.chr9                  41860124 140 + 116767853 taggcaggggctagaatttatttactctt--atgtccataatgcctgacacaggaactATTGTCACA----AATTGTATTGCCATAATTCCTGAGAACATATGTATATTGTAGTGACTCAT----------------AAAGGCTTGAAATAAATTT-TTAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821480 144 + 205426864 taggcaggggctagaatttatttactctt--atgtccataatgcctgacagaagacctattctcacacaCAAATTGTAAGGCCATAATTCCTGAGAACATATGTATATTGTAGTGACTCAT----------------AAAGGCTTGAAATAAATTT-TTAAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          230948 144 +    245036 taggcaggggctagaatttatttactctt--atgtccataatgcctgacagaagacctATTCTCACATACAAATTGTAAGGCCATAATTCCTGAGAACATATGTATATTGTAGTGACTCAT----------------AAAGGCTTGAAATAAATTT-TTAAAC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42106865 144 -  86207423 taggcaggggctagaatttatttactctt--atgtccataatgcctgacacaggaactgTTCCCACATGCAAATTGTAGGGCCATAATTCCTGAGAACATATGTATATTGTAGTGACTCAT----------------AAAGGCTTGAAATAAATTT-TTAAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262492 146 - 204787373 TAGTCAGAGGCCAGAATTTATTTACTCTTAAATGTCCATAATGCCTGACACAGGATCTATTCTCATATACCAATTGTAGGGCTGTAATTCCTGAGAACATATGTATATTGTAGTGACTCAT----------------AAAGGCTTGAAATAAATTT-TAAATA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    161699 146 - 192460366 TAGTCAGAGGCCAGAATTTATTTACTCTTAAATGTCCATAATGCCTGACACAGGATCTATTCTCATATACCAATTGTAGGGCTGTAATTCCTGAGAACATATGTATATTGTAGTGACTCAT----------------AAAGGCTTGAAATAAATTT-TAAATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181199 146 -  11645122 TAGTCAGAGGCCAGAATTTATTTACTCTTAAATGTCCATAATGCCTGACACAGGATCTATTCTCATATACCAATTGTAGGGCTGTAATTCCTGAGAACATATGTATATTGTAGTGACTCAT----------------AAAGGCTTGAAATAAATTT-TAAATA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166397 146 -   6739814 TAGTCAGAGGCCAGAATTTATTTACTCTTAAATGTCCATAATGCCTGACACAGGATCTATTCTCATATACCAATTGTAGGGCTGTAATTCCTGAGAACATATGTATATTGTAGTGACTCAT----------------AAAGGCTTGAAATAAATTT-TAAATA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56282 146 - 101219884 TAGTCAGAGGCCAGAATTTGTTTACTCTTAAATGTCCATGATGCCTGACACAGAATCTATTCTCATATACCAATTGTAGGGCTGTAATTCCTGAGAACATATGTATATTGTAGTGACTCAT----------------AAAGGCTTGAAATACATTT-TAAATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          178579 146 -    785044 TAGCCAGAGGCCAGAATTTATTTACTCTTAAATGTCCATAATGCCTGACACAGGATCTATTCTCATATACCAGTTGTAGGGCTGTAATTCCTGAGAACATATGTATATTGTAGTGACTCAT----------------AAAGGCTTGAAATAAATTT-TAAATA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           67628 144 -  10971483 tagtcaggggccagaatttatttactctt--tcgtccataatgcctgacgcaggatctATTCTCATATACCAATTGTAGGGCTGTAATTCCTGAGAACATACGTATATTGTAGTGACTCAT----------------AAAGGCTTGAAATAAATTT-TAAAAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925494 144 -  13128814 taggcaggggccaggatttatttattttt--atgcccataatgcctgacacagggtctATTGTCATATGCAAATTGTAGGACCATGATTCCTAAGAACTTATGTGTATGGTAGGGATTCAT----------------AAAGGTTTGAAATAAATTT-AGAAAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653655 145 +  14377064 taggtaggggccaggatttatttattctt--atgtccataatgcctggcacagggtctgTTGTCATATGCAAATTGTAGGACCATACTTCCTAAGAACTTATGTGTATGGTAGGGATTCAT----------------AAAGGTTTGAAACAAATTTAAAAAAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4121895 144 -   9889416 taggcaggggccaggatttatttattctt--atgtccataatgcctgacacagggtctATTGTCATATGCAAATTGTAGGACCATAATTCCTAAGAACTTATGTGTATAGCAGAGACTCAC----------------AAAGGTTTGAAATAAATTT-AAAAAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30866584 144 -  47401472 taggcagaggctaggatttatttattctt--atgtccataatgcctggaacaGGGACTATTGCCATATGCACATTGTAAGACCATAATTCCTGATAACATATACATATTGTAGAGATTCCT----------------AAAGGCTTGGATTAAATTT-TAAATA
i micMur3.chr31                I 1476 I 22
s mm10.chr16                    22697073 136 -  98207768 AGGTCAAAAGGTCAAATATTTTTTCTTTC--TTTTT-------------------TTTTTTTCTATACACAAATT----TGCTACAGGTCCTACTGACAAATGTATATTGTAGCATTTCAGTTCAGATGGCTCTATAAGAGGATTTGAATGAATGC-AAATA-
i mm10.chr16                   I 9 C 0
s canFam3.chr31                 28786938 128 -  39895921 TAGGCATGGTTTGG-----------------ATATATTTAATGCCTGCCGTGAAGCCTATGGTCATATACACATTGTAGGACCATAATTCCCGAAGACATACACACACTGTAGGGACCAAT----------------AAAGGCTTGGAATAAGTGA-AAATG-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684224 134 +   6883506 tattcaggggccatgatttatttattctt--gtgtccataatgcctcacagaaaa-ctgttgccacataTGCATTATA-GACCATAATTCCTGAGTACATACACATATTGTATGGACCTATT---------------GAAAGTTTGGAAGAAA----------
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20749062   0 +  38779656 C

a score=127966.000000
s hg38.chr14_GL000009v2_random    170210 19 +    201709 TGATTAATTG-GGAAGTCCA
s panTro5.chr9                  41860264 19 + 116767853 TGATTAATTG-GGAAGTCCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821624 19 + 205426864 TGATGAATTG-GGAAGTCCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          231092 19 +    245036 TGATGAAGTG-GGAAGTCCA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107009 19 -  86207423 TGATGAATTG-GGAAGTCCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262638 20 - 204787373 TGATGAATTGAGGAAGTCCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    161845 20 - 192460366 TGATGAATTGAGGAAGTCCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181345 20 -  11645122 TGATGAATTGAGGAAGTCCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166543 19 -   6739814 TGATGAATTGAGGAAGT-CA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56428 20 - 101219884 TGATGAATTGAGGAAGTCCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          178725 20 -    785044 TGATGAATTGAGGAAGTCCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           67772 20 -  10971483 TGATGAATTGAGGAAGTCCA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925638 20 -  13128814 TGATGCATTGAAGAGGTAAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653800 20 +  14377064 TGATGCACTGGAGAGGTCAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122039 20 -   9889416 TGATGCATTGGAGAGGTCAA
i aotNan1.NW_018487195v1       C 0 C 0
s mm10.chr16                    22697209 19 -  98207768 TGACAAATTGAGGAGAAAG-
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28787066 20 -  39895921 TGAGAAATTGGAAGAATCTG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684358 18 +   6883506 TAACAATTTT--GGAATCAA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30866728 22 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20749062  0 +  38779656 C

a score=719016.000000
s hg38.chr14_GL000009v2_random    170229 70 +    201709 TGAAC-TTGACATCTTGATGTAGAAGAAAAGCAAGGGCAGATGAAGAAGTTATACAGGATACTTGAAATAC
s panTro5.chr9                  41860283 70 + 116767853 TGAAC-TTGACATCTTGATGTAGAAGAAAAGCAAGAGCAGATGAAGAAGTTATACAGGATACTTGAAATAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821643 70 + 205426864 TGAAC-TTGATATCTCGATGTAGAAGAAAAGCAAGGGCAGATGAAGAAGTTATACAGGATACTTGAAATAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          231111 70 +    245036 TGAAC-TTGATATCTCGATGTAGAAGAAAAGCAAGGGCAGATGAAGAAGTTATACAGGATACTTGAAATAC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107028 70 -  86207423 TGAAC-TTGATATCTTGATGTAGAAGAAAAGCAAGGGCAGATGAAGAAGTTATACAGGATACTTGAAATAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262658 70 - 204787373 TGACC-TTGACCTCTCCATGTAGAAGAAAAGCAAGAGCAGATGAAGAAGTTATACAGGATACCTGCAATAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    161865 70 - 192460366 TGACC-TTGACCTCTCCATGTAGAAGAAAAGCAAGAGCAGATGAAGAAGTTATACAGGATACCTGCAATAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181365 70 -  11645122 TGACC-TTGACCTCTCCATGTAGAAGAAAAGCAAGAGCAGATGAAGAAGTTATACAGGATACCTGCAATAC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166562 70 -   6739814 TGACC-TTGACCTCTCCATGTAGAAGAAAAGCAAGAGCAGATGAAGAAGTTATACAGGATACCTGCAATAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56448 70 - 101219884 TGAAC-TTGACCTCTCCATGTAGAAGAAAAGCAAGGGCAGTTGAAGAAGTTATACAGGATACCTGTAATAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          178745 70 -    785044 TGACC-TTGACCTCTCCATGTAGAAGAAAAGCAAGAGCAGATGAAGAAGTTATACAGGATACCTGCAATAC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           67792 70 -  10971483 TGAAC-TTGACCTCTCCATGTAGAAGAAAAGCAAGGGCAGATGAAGAAGTTATACAGGATACCTGCAATAC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925658 70 -  13128814 TGAAC-TTGGTGTCTCAATGTAGAAGAAAAGCAAGGGCAGATAAACAAGTTATACAGGATACCTGAAATAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653820 70 +  14377064 TGAAC-TTGGCGTCTCAATGTAAAAGAAAAGCAAGGGCAGATAAATAAGTTATACAGGATACCTGAAATAC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122059 68 -   9889416 TGAAC-TTGGCATCTCA--GTAGAAGAAAAGCAAGGGCAGATAAATAAGTTATGCAGGATACCTGAAATAC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30866750 70 -  47401472 TGAAC-CTAGGATCTCTTTGTAGATGAAAAGCAAGAACAGATGAAAAAGTAATATAGGACACCTGAAATAC
i micMur3.chr31                I 22 I 134
s mm10.chr16                    22697228 59 -  98207768 TGA-T-ATGAGATTTACTTATATGTGAAAAACAAGGGAAA----------CAGACATGACACTGGAGATGT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28787086 67 -  39895921 TGAACTTTGACATCTCTGTGCAGATGAAAAACAAGAGTAG---AAGAGGTGATGT-GGCTGTCTGAAACAC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684376 65 +   6883506 GGAAA-TTGATATCTCTATGGAGATGAAA---AAGGATAGA--GAAATGTAACATACAATGCCTCAAATAC
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20749062  0 +  38779656 C

a score=120038.000000
s hg38.chr14_GL000009v2_random    170299 13 +    201709 CAGAAGAATATAA
s panTro5.chr9                  41860353 13 + 116767853 CAGAATAATATAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821713 13 + 205426864 CAGAAGAATATAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          231181 13 +    245036 CAGAAGAATATAG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107098 13 -  86207423 CAGAAGAATATAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262728 13 - 204787373 CAGAAGAATATAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    161935 13 - 192460366 CAGAAGAATATAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181435 13 -  11645122 CAGAAGAATATAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166632 13 -   6739814 CAGAAGAATATAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56518 13 - 101219884 CAGAAGAATATAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          178815 13 -    785044 CAGAAGAATATAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           67862 13 -  10971483 CAGAAGAATATAG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925728 13 -  13128814 CAGGAGAATTTAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653890 13 +  14377064 TAGGAGAATTTAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122127 13 -   9889416 CAGGAGAGTTTAG
i aotNan1.NW_018487195v1       C 0 C 0
s mm10.chr16                    22697287 10 -  98207768 ---AGGAACTTGG
i mm10.chr16                   C 0 I 8
s canFam3.chr31                 28787153 13 -  39895921 TAGGGAAGTATAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684441 13 +   6883506 TGGGGAAACTAAG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30866820 134 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e otoGar3.GL873528              20749062  0 +  38779656 C

a score=1162332.000000
s hg38.chr14_GL000009v2_random    170312 118 +    201709 TCAGAGAGCAATA-CATTAATCCTAG--ATTTTTAGATGT-GAAGAAGTTCTG--AGAAATATTTGAAGACTTGGCTCTAGGGAT-G-AGTACA----TAACAGAGACCAGTAGCCAGACT----CAGAG------------CTTT------
s panTro5.chr9                  41860366 118 + 116767853 TCAGAGAGCAATA-AATTAATCCTAG--ATTTTTAGATGT-GAAGAAGTTCTG--AGAAATATTTGAAGACATGGCTCTAGGTAT-G-AGTACA----TAACAGAGACCAGTAGCCAGAGT----CAGAG------------CTTT------
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821726 118 + 205426864 TCAGAGAGCAATA-AATTAATCCTGG--ATTTTTAGATGT-GAAGAAGTTCTG--AGAAATATTTGAAGACGTGGCTCTAGGAAT-C-AGTACA----TAACAGAGACCAGTAGCCAGAGT----CAGAG------------CTTT------
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          231194 118 +    245036 TCAGAGAGCAATA-AATTAATCCTGG--ATTTTTAGATGT-GAAGAAGTTCTG--AGAAATATTCGAAGACATGGCTCTAGGAAT-G-AGTACA----TAACAGAGACCAGTAGCCAGAGT----CAGAG------------CTTT------
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107111 118 -  86207423 TCAGAGAGCAATA-AATCAATCCTAG--ATTTTTAGATGT-GAAGAAGTTCTG--AGAAATATTTGAAGACATGGCTCTAGGAAT-G-AGTACA----TAACAGAGACCAGTAGCCAGAGT----CAGAG------------CTTT------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262741 118 - 204787373 TCAGAGAGCAATA-CATTAATCCTAG--ATTTTTAGATGT-GAAGAAGTTCTG--AGAAATATTTAAAGACATGACTCTAGAAAT-G-AGTACA----TAACAGAGACCAGTTTCCAGAGT----CAGAG------------CTTT------
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    161948 118 - 192460366 TCAGAGAGCAATA-CATTAATCCTAG--ATTTTTAGATGT-GAAGAAGTTCTG--AGAAATATTTAAAGACATGACTCTAGAAAT-G-AGTACA----TAACAGAGACCAGTTTCCAGAGT----CAGAG------------CTTT------
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181448 118 -  11645122 TCAGAGAGCAATA-CATTAATCCTAG--ATTTTTAGATGT-GAAGAAGTTCTG--AGAAATATTTAAAGACATGACTCTAGAAAT-G-AGTACA----TAACAGAGACCAGTTTCCAGAGT----CAGAG------------CTTT------
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166645 118 -   6739814 TCAGAGAGCAATA-CATTAATCCTAG--ATTTTTAGATGT-GAAGAAGTTCTG--AGAAATATTTAAAGACATGACTCTAGGAAT-G-AGTACA----TAACAGAGACCAGTTTCCAGAGT----CAGAG------------CTTT------
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56531 114 - 101219884 TCAGAGAGCAATA-CATTAATCCTAG--ATTTTTAGATGT-GAAGACGTTCTG--AGAAA----TAAAGACATGTCTCTAGGAAT-G-AGTACA----TAACAGAGACCAGTTTCCAGAGT----CAGAG------------CTTT------
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          178828 118 -    785044 TCAGAGAGCAATA-CATTAATCCTAG--ATTTTTAGATGT-GAAGAAGTTCTG--AGAAATATTTAAAGACATGACTCTAGGAAT-G-AGTACA----TAACAGAGACCAGTTTCCAGAGT----CAGAG------------CTTT------
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           67875 130 -  10971483 TCAGAGAGCAATA-CATTAATCCTAG--ATTTTTAGATGT-GAAGAAGTTCTG--AGAAATATTTAAAGACATGGCTCTAGGAAT-G-AGTACA----TAAcagagaccagtttccagagt----cagagccagagtcagaACTTT------
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925741 118 -  13128814 TCAGAGAGCAAGA-AATTAATCCTAG--ATTTTTAGATGT-GAAGCACTTCTG--AGAACTATTTGAATACATGGCTCTGGGAAT-G-AGTGCA----TAACAGAGACCAGTAGCCAGTGT----CAGAG------------CTTT------
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7653903 118 +  14377064 TCAGAGAGCAAGA-AATTAATCCTAG--ATTTTTAGATGT-GAAGCACTTCTG--AGAACTATTTGAATACATGGCTTTGGGAAT-G-AGTGCA----TAACAGAGACCAGTAACCAGAGT----CAGAG------------CTTT------
i cebCap1.NW_016107322v1       C 0 I 420
s aotNan1.NW_018487195v1         4122140 118 -   9889416 TCAGAGAGCAAGA-CATTAATCCTAG--ATTTTTAGATGT-GAAGCACTTCTG--AGAACTATTTGAATACATGGCTCTGGGAAT-G-AGTGCA----TAACAGAGACCAGTAGCCAGAGT----CAGAG------------CTTT------
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20749062 126 +  38779656 TCACAGGGCAAGA-AACTGAACCTAG--ACTCTTAGATGTAGAAGTAGTTACGAAAGAAATAGTTGAAGATGTATCTCAGGGGATAG-AGTAGAGAGGTATCAGGGATGGGTAGCTACAGT----CAGTG------------CTTC------
i otoGar3.GL873528             C 0 I 2
s mm10.chr16                    22697305 106 -  98207768 TTGGCAGGCAGCA-CATAGGTCTTATACATGCTTGAATAC-AAAGGGGTTCTG-----------------CATGAAATTAGGGAT-ATAGCTGG----TGACAGGAACCAGTATGCAAGGC----CAGTG------------CTCC------
i mm10.chr16                   I 8 I 2
s canFam3.chr31                 28787166 125 -  39895921 TCAGAAAATAAGA-AATTGATCCTAG--GTGCTTAGTGGT-GAAGAGGTTTGGAGAGAAATACTTGGAGATGTAGCTCAGGGAATGG-AAAGGG----TGAGAGAGCCCAGTAACCAGATTTTACCAGTA------------CTAG------
i canFam3.chr31                C 0 I 2
s dasNov3.JH568778               6684454 102 +   6883506 TCAGAAAGTAAGATAATTAATCCTAG------------GT-GAAGAAGTTCTAAGAGAAATACTTCATCATAGAGTTCAGGAAATGG-AGTGGG----T----------------CAGGGT----CAGGG------------CTAAAGATAT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30866820 134 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=401503.000000
s hg38.chr14_GL000009v2_random    170430 45 +    201709 AAAGAGTGAAGAAATTGCATTGCAGGGGGAAGGACTGTTGTATAC
s panTro5.chr9                  41860484 45 + 116767853 AAAGAGTGAAGAAATTGCATTGCAGGGGGAAGGACTGTTGTATAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821844 45 + 205426864 TCAGAGTGAAGAAATTGCATTGCAGGGGGAAGGGCTGTTGTATAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          231312 45 +    245036 TCAGAGTGAAGAAATTGCATTGCAGGGGGAAGGGCTGTTGTGTAC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107229 45 -  86207423 TCAGAGTGAAGAAATTGCATTGCAGGGAGAAGGGCTGTTTTATAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262859 45 - 204787373 TAAGAGTGAAGAAATTGCATTGCAGGGAGAAGGGCTGTTGTATAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162066 45 - 192460366 TAAGAGTGAAGAAATTGCATTGCAGGGAGAAGGGCTGTTGTATAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181566 45 -  11645122 TAAGAGTGAAGAAATTGCATTGCAGGGAGAAGGGCTGTTGTATAC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166763 45 -   6739814 TAAGAGTGAAGAAATTGCATAGCAGGGAGAAGGGCTGTTGTATAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56645 45 - 101219884 TAAGAGTGAAGAAATTGCATTGCAGAGGGAAGAGCTGTTGTATAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          178946 45 -    785044 TAAGAGTGAAGAAATTGCATTGCAGGGAGAAGGGCTGTTGTATAC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68005 45 -  10971483 TAAGAATGAAGAAATTGCATTGCAGGGGGAAGGGCTGTTGTATAC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925859 45 -  13128814 TAAGAGTGAAGAAACTGCATTGGAGGGGGAAGGGCTGTTGTATAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654441 45 +  14377064 aaaGAGTGAAGAAATTGCATTGCAGGGGGAAGGGCTGTTGTATAT
i cebCap1.NW_016107322v1       I 420 C 0
s aotNan1.NW_018487195v1         4122258 45 -   9889416 TAAGAGTGAAGAAATTGCATTGCAGGAGGAAAGGCTGTTGTATAC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20749190 35 +  38779656 AGACAGTCAGGAA----------GGAAGGGGGTGCTGCCAAATGA
i otoGar3.GL873528             I 2 C 0
s mm10.chr16                    22697413 37 -  98207768 ATGGAGCTAGGAAGTTACAATGAAAAAGGGAGGATGA--------
i mm10.chr16                   I 2 C 0
s canFam3.chr31                 28787293 36 -  39895921 ATACAGTCCGGGAACTGCACT---GGGGCAAGAGCTGTC------
i canFam3.chr31                I 2 C 0
s dasNov3.JH568778               6684556 31 +   6883506 ----AATTAGGGAATTGCATAGTGGAAGAGGGAAT----------
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30866820 134 -  47401472 I
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=299951.000000
s hg38.chr14_GL000009v2_random    170475 25 +    201709 TAAATAGA-AATTGTCATTAAATGGA
s panTro5.chr9                  41860529 25 + 116767853 TAAATAGA-AATTGTCATTAAATGGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821889 25 + 205426864 TAAACAGA-AATTGTCATTAAATGGA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          231357 25 +    245036 TAAACAGA-AATTGTCATTAAATGGA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107274 25 -  86207423 TAAACAGA-AATTGTCATTAAATGGA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262904 25 - 204787373 TTAACAGA-AATTGTCATTAAATGGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162111 25 - 192460366 TTAACAGA-AATTGTCATTAAATGGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181611 25 -  11645122 TTAACAGA-AATTGTCATTAAATGGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166808 25 -   6739814 TTAACAGA-AATTGTCATTAAATGGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56690 25 - 101219884 TTAACAGA-AATTGTCATTAAATGGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          178991 25 -    785044 TTAACAGA-AATTGTCATTAAATGGA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68050 25 -  10971483 TTAACAGA-AATTGTCATTAAATGGA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925904 25 -  13128814 TAAACAGA-AATTGTCATTAAATGGA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654486 25 +  14377064 TAAACAGA-AATTGTCATTAAATGGA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122303 25 -   9889416 TAAACAGA-AATTGTCATTAAATGGA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30866954 25 -  47401472 TAAACAGA-ATTTATCATTAAGTTGA
i micMur3.chr31                I 134 C 0
s otoGar3.GL873528              20749225 25 +  38779656 TAAACAGA-ATTTGTCATTAAATGGA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22697450 25 -  98207768 TAAGTAGA-ACACGTGATCATATTGA
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28787329 14 -  39895921 ---ATAGG-A--------TAAATGGA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684587 22 +   6883506 ----CAGATGATAAGCATAATTTGGA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01317676v1      1136 181 +      2209 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=17290.000000
s hg38.chr14_GL000009v2_random    170500 1 +    201709 A
s panTro5.chr9                  41860554 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821914 1 + 205426864 A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          231382 1 +    245036 A
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107299 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262929 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162136 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181636 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166833 1 -   6739814 A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56715 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179016 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chrUn_JMHX01037930v1       102 1 +       836 A
i nasLar1.chrUn_JMHX01037930v1 n 181 n 181
s colAng1.NW_012123820v1           68075 1 -  10971483 A
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10925929 1 -  13128814 A
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654511 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122328 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30866979 1 -  47401472 A
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20749250 1 +  38779656 A
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28787343 1 -  39895921 A
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684609 1 +   6883506 A
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22697475 1 -  98207768 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=469030.000000
s hg38.chr14_GL000009v2_random    170501 42 +    201709 GACTAAGCAAGAGGCTGATGATCTGTGGATGAGAGAC-CAAAA
s panTro5.chr9                  41860555 43 + 116767853 GACTAAGCAAGAGGCTGATGATCTGTGGATGAGAGATGCAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821915 43 + 205426864 GACTAAGCAAGAGGCTGATGATCCGTGGATGAGAGACACAAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          231383 43 +    245036 GACTGAGCAAGAGGCTGATGATCTGTGGATGAGAGACGCAAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107300 42 -  86207423 GACTAAGCAAG-GGCTGATGATCTGTGGCTGAGAGATGCAAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262930 43 - 204787373 GACTAAGCAAGAGGCTGATGATCTGTGGATGAGAGACGCAAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162137 43 - 192460366 GACTAAGCAAGAGGCTGATGATCTGTGGATGAGAGACGCAAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181637 43 -  11645122 GACTAAGCAAGAGGCTGATGATCTGTGGATGAGAGACGCAAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166834 43 -   6739814 GACTAAGCAAGAGGCTGATGATCTGTGGATGAGAGACGCAAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56716 43 - 101219884 GATTAAGCAAGAGGCTGATGATCTGTTTATGAGAGATGCAAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179017 43 -    785044 GACTAAGCAAGAGGCTGATGATCTGTGGATGAGAGACGCAAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68076 43 -  10971483 GACTAAGCAAGAGGCTGATGATCTGTGGATGAGAGACGCAAAA
i colAng1.NW_012123820v1       C 0 I 1
s saiBol1.JH378168              10925930 43 -  13128814 GACTAAGCAAGAGGCTGAAGATCTGTGAATGACAGACCCAAAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654512 43 +  14377064 GACTAAACAAGAGGCTGATGATCTGTGGATAACAGACCCAAAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122329 43 -   9889416 TACTAAGCAAGAGGCTGATGATCTGTGGATGACAGACCCAAAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30866980 42 -  47401472 GATGAAACAAGGGGCTAATGACCTATGGATGACAGACTCAAA-
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20749251 41 +  38779656 GACCAAAAAGGAGGCTGAT-ACCTACAGATGGCAGACGTGGA-
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22697476 41 -  98207768 AAATGAAAAAATGGCTGCTGACCTG-GGAAGACAGACAGACT-
i mm10.chr16                   I 1 I 1
s canFam3.chr31                 28787344 38 -  39895921 GACT----AAGAGGTTGATAGTCAGTGGATGCCAGCCTCAAA-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684610 43 +   6883506 CATGAAGCAAGAAGCTGATAGTTTGTAGATGACAGATCCCAAG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=7075.000000
s hg38.chr14_GL000009v2_random    170543 1 +    201709 T
s panTro5.chr9                  41860598 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821958 1 + 205426864 A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          231426 1 +    245036 A
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107342 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262973 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162180 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181680 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166877 1 -   6739814 A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56759 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179060 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10925973 1 -  13128814 A
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654555 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122372 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30867022 1 -  47401472 A
i micMur3.chr31                C 0 I 1
s otoGar3.GL873528              20749292 1 +  38779656 A
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28787382 1 -  39895921 A
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684653 1 +   6883506 A
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22697517 1 -  98207768 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e colAng1.NW_012123820v1           68119 1 -  10971483 I

a score=2013108.000000
s hg38.chr14_GL000009v2_random    170544 165 +    201709 GGTGTGGAGATAGAGGTAAATGCCATAATCTA-CAAAGAAGATA-TTTTTGTGCCAGAAAGAAATAATA--GGTCTAGAACGTAATAAAAGATAAATA-GTTAACTACGTTGTAATGTGGTCTGAGAACTCACTGAAGGCATAGCCATTGATATTAACT---TCCACTTTGCT
s panTro5.chr9                  41860599 165 + 116767853 GGTGTGGAGACAGAGGTAAATGCCATAATCTA-CAAAGAAGATA-TTTTTGTGCCAGGAAGAAATAATA--GGTCTAGAAAGTAATAAAAGATAAATA-GTTAACTACACTGTAATGTGGTCTCAGAACTCACTGAAGGCATAGCCATTGATATTAACT---TCCACTTTGCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77821959 165 + 205426864 GGTGTGGAGATAGACGTAGATGCCATAATGTA-CAAAGAAGATA-TTTTTGTGCCAGGAAGAAAGAATA--GGTCTAGAATGTAATAAAAGATAAATC-GTTAACTATGTTGTAATGTGGTCTGAGAACTTACTGAAGGCATAGCCATTGATATTAACT---TCCACTTTGCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          231427 165 +    245036 GGTGTGGAGATAGACGTAAATGCCATAATGTA-CAAAGAAGATA-TTTTTGTGCCAGGAAGAAAGAATG--GGTCTAGAATGTAATAAAAGATAAATC-GTTAACTACGTTGTAATGTGGTCTGAGAACTCACCGAAGGCATAGCCATTGATATTAACT---TCCACTTTGCT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107343 165 -  86207423 GGTGTGGAGATAGAGGTAAATGCCATAATCTA-CAAAGAAGATA-TTTTTGTGCCAGGAAGAAAGAATA--GGTCTAGAATGCAATAAAAGATAAATA-GGTAACTACATTGTAATGTGGTCTGAGAACTCACTGAAGGCATAGCCATTGATGTTAACT---TCCACTTTGCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204262974 165 - 204787373 AGTGTGGAGATAGAGGTAGATGACATAATCTT-CAAAGAAGATA-TTTTTGTGCCAGGAAGAAAGAATA--GGTCTAGAATGTAATAAAAGATAAATA-GGTAACTACATTGTAATGTGGTCTGAGAACTCACTGAAGGCATATCCATTGATATTAACC---TCCACTTTGCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162181 165 - 192460366 AGTGTGGAGATAGAGGTAGATGACATAATCTT-CAAAGAAGATA-TTTTTGTGCCAGGAAGAAAGAATA--GGTCTAGAATGTAATAAAAGATAAATA-GGTAACTACATTGTAATGTGGTCTGAGAACTCACTGAAGGCATATCCATTGATATTAACC---TCCACTTTGCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181681 165 -  11645122 AGTGTGGAGATAGAGGTAGATGACATAATCTT-CAAAGAAGATA-TTTTTGTGCCAGGAAGAAAGAATA--GGTCTAGAATGTAATAAAAGATAAATA-GGTAACTACATTGTAATGTGGTCTGAGAACTCACTGAAGGCATATCCATTGATATTAACC---TCCACTTTGCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          166878 165 -   6739814 AGTGTGGAGATAGAGGTAGATGACATAATCTT-CAAAGAAGATA-TTTTTGTGCCAGGAAGAAAGAATA--GGTCTAGAATGTAATAAAAGATAAATA-GGTAACTACATTGTAATGTGGTCTGAGAACTCACTGAAGGCATATCCATTGACATTAACC---TCCACTTTGCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56760 165 - 101219884 GGTGTGGAGATAGAGGTAGATGTCATAATCTT-CAAAGAAGATA-TTTTTGTGCCAGGAAGAAAGAATA--GGTCTAGAATGTAATAAAAGATAAATA-GGTAACTACATTGTAATGTGGTCTGAGAACTCACTGAAGGCATATCCATTGATATTAACC---TCCACTTTGCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179061 165 -    785044 AGTGTGGAGATAGAGGTAGATGACATAATCTT-CAAAGAAGATA-TTTTTGTGCCAGGAAGAAAGAATA--GGTCTAGAATGTAATAAAAGATAAATA-GGTAACTACATTGTAATGTGGTCTGAGAACTCACTGAAGGCATATCCATTGACATTAACC---TCCACTTTTCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68120 165 -  10971483 GGTGTGGAGATAGAGGTAGATGTCATAATCTT-CAAAGAAGATA-TTTTTGTGCCAGGAAGAAAGAATA--GGTCTGGAATGTAATAAAAGATAAATA-GGTAACTACATTGTAATGTGGTCTGAGAACTCACTGAAGGCATATCCATTGATATTAACC---TCCACTTTGCT
i colAng1.NW_012123820v1       I 1 C 0
s saiBol1.JH378168              10925974 165 -  13128814 AGTGAGGAGATAGAGGTAGATGCCATAATCTT-CAAAGAAGATA-TTTTTGTACCAGGAAGAAAGAATA--TGTCTAGAATGTAATAAAAGATAAATA-GGTAACTACACTGTAATGTGATCTGAGAACTCACTGAAGGCACAGGCATTGATAGCAACC---TCCACTTTGCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654556 165 +  14377064 AGTGAGGAGATAGAGGTAGATGCCATAATCTT-CAAAGAAGACA-TTTTTGTACCAGGAAGAAAGAATA--TGTCTAGAATGTAATAAAAGATAAATA-GGTAACTACACTGTAATGTGATCTGAGAACTCACTGAAGGCACAGGCATTGGTACCAACC---TCCACTTTGAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122373 165 -   9889416 GGTGAGGAGATAGAGGTAGATGCCATAATCTT-CAAAGAAGATA-TTTTTGTACCAGGAAGAAAGAATA--TGTCTAGAATGTAATAAAAGATAAATA-GGTAACTACACTGTAATGTGATCTGAGAACTCACTGAAGGCATAGGCATTGATACCCACC---TCCACTTTGCT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30867024 165 -  47401472 GGTATACAGATAGCAGTAGATGCCACAATCTT-TAAAGAAGATA-CTTTTGCACCAGAAAGAAATAATA--AGGCTGGAATTTAATAAAAGATAAATA-TATAACTATTTTCTAATGTGGTCTGAGAACTCAGTGAAGGAATAGGTGTTGATGTTAACC---TCCGCTTTGCT
i micMur3.chr31                I 1 C 0
s otoGar3.GL873528              20749293 149 +  38779656 GGTACAGGGATAGCAGTAGATGTCATAATCTT-TGAAGAAGGTA-CTTTTTCGTTAG--------AATA--TGCGTAGAATATATTAAAAGATAAATA-CGTAGCTACATTCTAACGT--TCTGAGAACTTAATGA------AAATGTTGGTGTTAAAC---TCCACTTTGCT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22697518 156 -  98207768 ---GAAGAGACAAGGCTAGATGTCTCACTATTCCAGAGAAAAGA-TTGTTTTCCCATA----------A--GATGTGGAGTGCTATAAAGTATAAATA-GGCAGTTATATTGTAAAGTGTTCTGAGGACTCAAAAAAGGCACGTGTGTTAATGGTAACAATGTTCACTATGCT
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 28787383 161 -  39895921 GGTATAGAGATATAGCTAGATTCCACAATTTT-CAAAGAAAATATTTTTTGCACCAGGAAG---GAGTA--AGTTTGGAATGTGATAAAAGATAAATT-GGTAATCGTACTGTAATGTGATCTGAG-ACCCACTAAAAGCAGACGTG-TGATGGCAACC---TATATTTTGCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684654 165 +   6883506 GGAATAGAAATATGGCTAAATTCCACAATTGT-C-AAGATGAAA-TTTTTGTACCATGAAGCAAGAATAACAATCTGGAATGTGATAAAGGATAAATACAATAAGTACATGCTATTGC--TCTGACAACCCACTAAAGGCAAAAGTGTTGATGGCAACC---TCTACTTTTCT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           74204 3344 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=79536.000000
s hg38.chr14_GL000009v2_random    170709 7 +    201709 TCCAGAC
s panTro5.chr9                  41860764 7 + 116767853 TCCAGAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77822124 7 + 205426864 TCCAGAC
i panPan2.chr3                 C 0 I 6193
s gorGor5.CYUI01000160v1          231592 7 +    245036 TCCAGAC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107508 7 -  86207423 TCCAGAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263139 7 - 204787373 TCCAGAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162346 7 - 192460366 TCCAGAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181846 7 -  11645122 TCCAGAC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167043 7 -   6739814 TCCAGAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56925 7 - 101219884 TCCAGAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179226 7 -    785044 TCCAGAC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68285 7 -  10971483 TCCAGAC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926139 7 -  13128814 TTCAGAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654721 7 +  14377064 TTCAGAC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122538 7 -   9889416 TTCAGAC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30867189 7 -  47401472 CACTGAC
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           77548 7 +   1229009 CACTGAC
i eulFla1.LGHW01000695v1       I 3344 C 0
s otoGar3.GL873528              20749442 7 +  38779656 CACAGAC
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22697674 7 -  98207768 CTCAAAA
i mm10.chr16                   C 0 I 3
s canFam3.chr31                 28787544 7 -  39895921 TACTGGC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684819 7 +   6883506 CAGTGAC
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=80664.000000
s hg38.chr14_GL000009v2_random    170716 7 +    201709 -AAAAGAT
s panTro5.chr9                  41860771 7 + 116767853 -AAAAGAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828324 7 + 205426864 -AAAAGAC
i panPan2.chr3                 I 6193 C 0
s gorGor5.CYUI01000160v1          231599 7 +    245036 -AAAAGAt
i gorGor5.CYUI01000160v1       C 0 I 6181
s nomLeu3.chr21                 42107515 7 -  86207423 -AAAAGAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263146 7 - 204787373 -AAAAGAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162353 7 - 192460366 -AAAAGAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181853 7 -  11645122 -AAAAGAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167050 7 -   6739814 -AAAAGAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56932 7 - 101219884 -AAAAGAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179233 7 -    785044 -AAAAGAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68292 7 -  10971483 -AAAAGAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926146 7 -  13128814 -AAAAGAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654728 7 +  14377064 -AAAAGAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122545 7 -   9889416 -AAAAGAT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30867196 7 -  47401472 -AAGAGAT
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           77555 7 +   1229009 -AATAGAT
i eulFla1.LGHW01000695v1       C 0 C 0
s otoGar3.GL873528              20749449 7 +  38779656 -AATAGAT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22697684 7 -  98207768 -TAAGTAC
i mm10.chr16                   I 3 C 0
s canFam3.chr31                 28787551 7 -  39895921 -AATAGGT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684826 7 +   6883506 CGTAAGT-
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=190204.000000
s hg38.chr14_GL000009v2_random    170723 14 +    201709 TTTAAATATCTTAA
s panTro5.chr9                  41860778 14 + 116767853 TTTAAATATCTTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828331 14 + 205426864 TTTAAATATCTTAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          237787 14 +    245036 TTTAAATATCTTAA
i gorGor5.CYUI01000160v1       I 6181 C 0
s nomLeu3.chr21                 42107522 14 -  86207423 TTTAAATATCTTAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263153 14 - 204787373 TTTAAACATCTTAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162360 14 - 192460366 TTTAAACATCTTAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181860 14 -  11645122 TTTAAACATCTTAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167057 14 -   6739814 TTTAAACATCTTAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56939 14 - 101219884 TTTAAACATCTTAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179240 14 -    785044 TTTAAACATCTTAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68299 14 -  10971483 TTTAAACATCTTAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926153 14 -  13128814 TTTAAATATCTTAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654735 14 +  14377064 TTTAAATATCTTAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122552 14 -   9889416 TTTAAATATCTTAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30867203 14 -  47401472 TTTTAATATCTTAA
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           77562 14 +   1229009 ATTTAATATCTTAA
i eulFla1.LGHW01000695v1       C 0 C 0
s otoGar3.GL873528              20749456 13 +  38779656 TTTTAATAT-TTAA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22697691 12 -  98207768 --TTAACATCTTCA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28787558 14 -  39895921 TTTTAATATCTTAA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684833 12 +   6883506 -TTTATTTTTTTA-
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=44324.000000
s hg38.chr14_GL000009v2_random    170737 4 +    201709 AAAT
s panTro5.chr9                  41860792 4 + 116767853 AAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828345 4 + 205426864 AATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          237801 4 +    245036 AAAT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107536 4 -  86207423 AAAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263167 4 - 204787373 AAAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162374 4 - 192460366 AAAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181874 4 -  11645122 AAAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167071 4 -   6739814 AAAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56953 4 - 101219884 AAAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179254 4 -    785044 AAAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68313 4 -  10971483 AAAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926167 4 -  13128814 ACAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654749 4 +  14377064 ACAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122566 4 -   9889416 ACAT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30867217 4 -  47401472 AAAT
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           77576 4 +   1229009 AAAT
i eulFla1.LGHW01000695v1       C 0 C 0
s otoGar3.GL873528              20749469 4 +  38779656 AAAA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22697703 4 -  98207768 ACTT
i mm10.chr16                   C 0 C 0
s dasNov3.JH568778               6684845 4 +   6883506 AAAT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28787572 0 -  39895921 C

a score=429046.000000
s hg38.chr14_GL000009v2_random    170741 36 +    201709 TACATTTGATATTGTATGat---------------------tcat-caagacagaaag
s panTro5.chr9                  41860796 36 + 116767853 TCCATTTGATATTGTATGat---------------------tcat-caagacagaaag
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828349 36 + 205426864 TGCATTTGATATTGTATGat---------------------tcat-caagacagaaag
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          237805 36 +    245036 TGCATTTGATATTGTATGat---------------------tcac-caagacagaaag
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107540 36 -  86207423 TGCATTGGATACTGTATGat---------------------tcat-caagacagaaag
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263171 36 - 204787373 TCCATTTGATACTGTATGat---------------------tcat-caagacagaaag
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162378 36 - 192460366 TCCATTTGATACTGTATGat---------------------tcat-caagacagaaag
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181878 36 -  11645122 TCCATTTGATACTGTATGat---------------------tcat-caagacagaaag
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167075 36 -   6739814 TCCATTTGATACTGTATGat---------------------tcat-caagacagaaag
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56957 36 - 101219884 TCCACTTGATACCGTATGat---------------------tcat-caagacagaaag
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179258 36 -    785044 TCCATTTGATACTGTATGat---------------------tcat-caagacagaaag
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68317 36 -  10971483 TCCATTTGATACTGTATGat---------------------tctt-caagacagaaag
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926171 36 -  13128814 TGCATTTGATACTCTATGat---------------------tcat-cgagacagaaag
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654753 36 +  14377064 TGCATTTGATACTGTATGat---------------------tcat-cgagacagaaag
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122570 36 -   9889416 TGCATTTGATACTGTATGat---------------------tcat-cgagacggaaag
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30867221 36 -  47401472 TTCATTTGATACTGTGTGat---------------------tcat-agagacagaaag
i micMur3.chr31                C 0 I 490
s eulFla1.LGHW01000695v1           77580 36 +   1229009 TGCATTTCACAATGTGTGat---------------------tcat-agagacagaaca
i eulFla1.LGHW01000695v1       C 0 C 0
s otoGar3.GL873528              20749473 37 +  38779656 TGTATTTGATACTGTGTGAG---------------------tcataagagacagaaag
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22697707 57 -  98207768 TACACATAACACTGTATAATTCCAGTCTATGAGATGCTTAGTCAT-GGGGACAGGAGA
i mm10.chr16                   C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28787572  0 -  39895921 C
e dasNov3.JH568778               6684849  0 +   6883506 C

a score=279175.000000
s hg38.chr14_GL000009v2_random    170777 30 +    201709 -------caaagctgtagttgccctgggggggtgggg
s panTro5.chr9                  41860832 30 + 116767853 -------taaagctgtagttgtcctgggagggcgggg
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828385 30 + 205426864 -------taaagctgtagttgccctgggagggcgggg
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          237841 30 +    245036 -------taaagctgtagttgccctgggagggcgggg
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107576 30 -  86207423 -------taaagctgtaattgccctgggagggcgggg
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263207 30 - 204787373 -------taaagcggtagttgccctgggagggcgggg
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162414 30 - 192460366 -------taaagcggtagttgccctgggagggcgggg
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181914 30 -  11645122 -------taaagcggtagttgccctgggagggcgggg
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167111 30 -   6739814 -------taaagcggtagttgccctgggagggcgggg
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    56993 30 - 101219884 -------taaagcggtagttgccctgggagggtggag
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179294 30 -    785044 -------taaagcggtagttgccctgggagggcgggg
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68353 30 -  10971483 -------taaagtggtagttgccctgggagggcgggg
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926207 30 -  13128814 -------taaggcggtagttgccataggagggcgggg
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654789 29 +  14377064 -------taaagcaggagttgccct-gggggaagggg
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4122606 30 -   9889416 -------taaagcggtagttgccctgggagggcgggg
i aotNan1.NW_018487195v1       C 0 I 616
s eulFla1.LGHW01000695v1           77616 30 +   1229009 -------tagaatggtggttgccttggaggaggatgg
i eulFla1.LGHW01000695v1       C 0 C 0
s otoGar3.GL873528              20749510 30 +  38779656 -------tggaatggtggttgccttgggggaggatgg
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22697764 23 -  98207768 TATGGAATACACCGGCAGT-------GAAA-------
i mm10.chr16                   C 0 C 0
e micMur3.chr31                 30867257 490 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28787572  0 -  39895921 C
e dasNov3.JH568778               6684849  0 +   6883506 C

a score=336651.000000
s hg38.chr14_GL000009v2_random    170807 36 +    201709 aat---ggggagtcactttt-aatgggtacagggtttcaa
s panTro5.chr9                  41860862 37 + 116767853 aat---ggggagtcactttttaatggatacaggatttcaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828415 37 + 205426864 aat---ggggagtcactgtttaatgggtacaggatttcca
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          237871 37 +    245036 aat---ggggagtcactgtttaatgggtacaggatttcca
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107606 37 -  86207423 aat---agggagtcactgtttaatgggtacaggatttcaa
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263237 37 - 204787373 aat---ggggagtcactgtttaatgggtacaggatttcaa
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162444 37 - 192460366 aat---ggggagtcactgtttaatgggtacaggatttcaa
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181944 37 -  11645122 aat---ggggagtcactgtttaatgggtacaggatttcaa
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167141 37 -   6739814 aat---ggggagtcactgtttaatgggtacaggatttcaa
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57023 37 - 101219884 aat---ggggagtcactgtttaatgggtacaggatttcaa
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179324 37 -    785044 aat---ggggagtcactgtttaatgggtacaggatttcaa
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68383 37 -  10971483 aat---gaggagtcactgtttaatgggtacaggatttcaa
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926237 36 -  13128814 -ct---tgggagtcattgtttaatgggtacaggagttcaa
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654818 36 +  14377064 -ct---tgggagtcattgtttaatgggtacaggagttcaa
i cebCap1.NW_016107322v1       C 0 C 0
s eulFla1.LGHW01000695v1           77646 37 +   1229009 aat---gaagaatcattgtttaactggtacagaggtccag
i eulFla1.LGHW01000695v1       C 0 I 312
s otoGar3.GL873528              20749540 40 +  38779656 aatgaagaagaatcatggtttaatgggtacagaggctcag
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22697787 34 -  98207768 GAC---TGAAAGTCTTTGTTTAAGGGATACAG---TTCTG
i mm10.chr16                   C 0 C 0
e micMur3.chr31                 30867257 490 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4122636 616 -   9889416 I
e canFam3.chr31                 28787572  0 -  39895921 C
e dasNov3.JH568778               6684849  0 +   6883506 C

a score=96177.000000
s hg38.chr14_GL000009v2_random    170843 11 +    201709 ttttacaagac
s panTro5.chr9                  41860899 11 + 116767853 ttttacaagac
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828452 11 + 205426864 ttttacaagac
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          237908 11 +    245036 ttttacaagac
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107643 11 -  86207423 ttttacaagac
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263274 11 - 204787373 ctttacaaaac
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162481 11 - 192460366 ctttacaaaac
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181981 11 -  11645122 ctttacaaaac
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167178 11 -   6739814 ctttacaaaac
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57060 11 - 101219884 ttttacaaaac
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179361 11 -    785044 ctttacaaaac
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68420 11 -  10971483 tttcacaaaac
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926273 11 -  13128814 ttttacaagtc
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654854 11 +  14377064 ttttacaagac
i cebCap1.NW_016107322v1       C 0 C 0
s otoGar3.GL873528              20749580 11 +  38779656 ttttataaaac
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22697821 11 -  98207768 TTTTTTAAGAC
i mm10.chr16                   C 0 C 0
e micMur3.chr31                 30867257 490 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           77683 312 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e aotNan1.NW_018487195v1         4122636 616 -   9889416 I
e canFam3.chr31                 28787572  0 -  39895921 C
e dasNov3.JH568778               6684849  0 +   6883506 C

a score=1225911.000000
s hg38.chr14_GL000009v2_random    170854 140 +    201709 aaaaagaattatggagatgggtggtg---gtgatgcttgcacaacattgtgaata-----------------------------------------------------------cat-ttaatgacaccgaattgtatacttaacagtggttaagat-gcaaa--ttgttgag-----tgtgttttgccacaattaaaaaaCAG-----------------AAAACAA
s panTro5.chr9                  41860910 140 + 116767853 aaaaagaattatggagatgggtggtg---gtgatgcttgcacaacattgtgaata-----------------------------------------------------------cat-ttaatgacactgaattgtatacttaacagtggttaagat-gcaaa--ttgttgag-----tgtgttttgccacagttaaaaaaCGG-----------------AAAATAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828463 140 + 205426864 aaaaagaattatggagatgggtcgtg---atgatgcttgcacaacattgtgaata-----------------------------------------------------------cat-ttaataacactgaattgtatacttaacagtggttaagat-gcaaa--ttgttgag-----tgtattttgccacaattaaaaaaTGG-----------------AAAACAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          237919 140 +    245036 aaaaagaattatggagatgggttgtg---atgatgcttgcacaacattgtgaata-----------------------------------------------------------cat-ttaataacactgaattgtatacttaacagtggttaagat-gcaaa--ttgttgag-----tgtattttgccacaattaaaaaaTGG-----------------AAAACAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107654 140 -  86207423 aaaaagaattatggagatgggtggtg---gtgatgcttgcacaacgttgtgaata-----------------------------------------------------------cat-ttaataacactgaattgtatacttaacagtggttaagat-gcaaa--ttgttgag-----tgtattttgccacaactaaaaaaTGG-----------------AAAACAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263285 138 - 204787373 aaaa--aattatggacatgggtggtg---gtgatgcttgcacaacgttgtgaata-----------------------------------------------------------cat-ttaataacactgaattgtagacttaaaagtggttaagat-gcaaa--ttgttgag-----tgtattttgccacaataaaaaaaTGA-----------------AAAACAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162492 138 - 192460366 aaaa--aattatggacatgggtggtg---gtgatgcttgcacaacgttgtgaata-----------------------------------------------------------cat-ttaataacactgaattgtagacttaaaagtggttaagat-gcaaa--ttgttgag-----tgtattttgccacaataaaaaaaTGA-----------------AAAACAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          181992 138 -  11645122 aaaa--aattatggacatgggtggtg---gtgatgcttgcacaacgttgtgaata-----------------------------------------------------------cat-ttaataacactgaattgtagacttaaaagtggttaagat-gcaaa--ttgttgag-----tgtattttgccacaataaaaaaaTGA-----------------AAAACAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167189 138 -   6739814 aaaa--aattatggagatgggtggtg---gtgatgcttgcacaacattgtgaata-----------------------------------------------------------cat-ttaataacactgaattgtagacttaaacgtggttaagat-gcaaa--ttgttgag-----tgtattttgccacaataaaaaaaTGA-----------------AAAACAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57071 138 - 101219884 aaaa--aattatggggatgggtggtg---gtgatgcttgcacaacattgtgaata-----------------------------------------------------------cat-ttaataacactgaattgtagacttaaaagtagttaagat-gcaaa--ttgttgag-----tgtattttgccacaataaaaaaaTGG-----------------AAAACAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179372 137 -    785044 aaaa--aattatggagatgggtggtg---gtgatgcttgcacaacattgtgaata-----------------------------------------------------------cat-ttaataacactgaattatagacttaaaagtagttaagat-gcaaa--ttgttgag------gtattttgccacaataaaaaaaTGA-----------------AAAACAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68431 138 -  10971483 aaaa--aattatggagacgggtggtg---gtgatgcttgcacaacattgtgaata-----------------------------------------------------------cat-ttaataacactgaattgtagacttaaaagtggttaagat-gcaaa--ttgttgat-----tgtattttgccacaataaaaaaaTGA-----------------GAAACAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926284 143 -  13128814 aaaaagaattagggagatgggtggtg---gtgatgcttgcacagcatcatgaata-----------------------------------------------------------tat-ttaataagactgaactgtacacttaaaagtggttaagatggcaaattttgttgag-----tgtattttgccacaataaaaaaaTGG-----------------AAAACAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7654865 143 +  14377064 aaaaagaattagggagatgggtggtg---gtgatgtttgcacagcatcgtgaata-----------------------------------------------------------tat-ttaataagactgaactgtacacttaaaagtggttaagatggcaaattttgttgag-----tgtattttgccacaataaaaaaaTGG-----------------AAAACAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4123252 146 -   9889416 aaaaagaattaaggagatgggaggtggtcgtgatgcttgcacagcatagtgaata-----------------------------------------------------------tat-ttaataagactgaactgtacacttaaaagtggttaagatggcaaattttgttgag-----tgtattttgccacaataaaaaaaTGG-----------------AAAACAA
i aotNan1.NW_018487195v1       I 616 C 0
s otoGar3.GL873528              20749591 158 +  38779656 aaatagaattatggagatg----gca---gtgatggctgtacaacactaagcatg-----------------------------------------------------------cct-ttcataacactgcattgcacacttacgagtggttacaat-agaaa--atgttgtgttatgtgtattttTAAACaaaaaataaacaaatttaaaattgtattttaaaacaa
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22697832 195 -  98207768 AATAGTAATTTTGGAAGTGAACGGCA---GAGATTGGTGTACAAAATTACGAatattaattatattgtatattaattatatattatattatattatattatatattaattatattatattaATAATACTGAACAGTATA--TATAAGTGATTAAGAT-GTAAT--ATTTTATG-TTTGTGTAATTAGCTGT-------AAATAT-----------------TAAACAA
i mm10.chr16                   C 0 C 0
e micMur3.chr31                 30867257 490 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           77683 312 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28787572   0 -  39895921 C
e dasNov3.JH568778               6684849   0 +   6883506 C

a score=175521.000000
s hg38.chr14_GL000009v2_random    170994 21 +    201709 TAGTATTTGAA----GATATAGCCC
s panTro5.chr9                  41861050 21 + 116767853 TAGTATTTGAA----GATATAGCCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828603 21 + 205426864 TAGTATTTGAA----GATATAGCCC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238059 21 +    245036 TAGTATTTGAA----GATATAGCCC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107794 21 -  86207423 TAGTATTTGAA----GATATAGCCC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263423 21 - 204787373 TAATGTTTGAA----GATATAGCCC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162630 21 - 192460366 TAATGTTTGAA----GATATAGCCC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182130 21 -  11645122 TAAAGTTTGAA----GATATAGCCC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167327 21 -   6739814 TAATGTTTGAA----GATATAGCCC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57209 21 - 101219884 TAATGTTTGAA----GATATAGCCC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179509 21 -    785044 TAATGTTTGAA----GATATAGCCC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68569 21 -  10971483 TAATATTTGAA----GATATAGCCC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926427 21 -  13128814 TAGCATTTGAA----GACACAGGCC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655008 21 +  14377064 TAGCATTTGAA----GACATAGGCC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4123398 21 -   9889416 TAGCATTTGAA----GACATAGGCC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20749749 25 +  38779656 taaaaaattaaaattGATAAAGGCA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22698027 21 -  98207768 TTTTATCAAAG----TAGATGGGTA
i mm10.chr16                   C 0 C 0
s dasNov3.JH568778               6684849 21 +   6883506 TTGTACTTAAA----GACATATTCA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30867257 490 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           77683 312 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I
e canFam3.chr31                 28787572  0 -  39895921 C

a score=1475486.000000
s hg38.chr14_GL000009v2_random    171015 141 +    201709 ATTTCATCTGGTAGCTAGCTGTATGTGTCTGCTCAGCTGTGG-ATAAATATTTATGCTGTTTCTGAACTGGAGGTTACTGGTATTCTCTAAGGTATAGGAAAATTGATCTTATGTGGCTAACTGAGGTGGATATAGTTGTAT
s panTro5.chr9                  41861071 141 + 116767853 ATTTCATCTGGTAGCTAGCTGTATGTGTCTGCTCAGCTGTGG-ATAGATATTTATGCTGTTTCTGAACTGGAGGTTACTGGTATTCTCTAAGGTATAGGAAAATTGATCTTATGTGGCTAACTGAGGTGGATAAAGTTGTAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828624 141 + 205426864 ATTTCATCTGGTAGCTAGCTGTATGTGTCTGCTCAGCTGTGG-ATAGATATTTATGCTGTCTCTGAACTGTAGGTTACTGGTATTCTCTAAGGTATAGGAAAATTGATCTTATGTGGCTAACTGAGGTGGATATAGTTGTAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238080 140 +    245036 ATTTCATCTGGTAGCTAGCTGTATGTGTCTGCTCAGCTGTGG-ATAGATATTTATGCTGTCTCTGAACTGTAGGTTACTGGTATTCTCTAAGGTATAGG-AAATTGATCTTATGTGGTTAACTGAGGTGGATATAGTTGTAT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107815 141 -  86207423 ATTTCATCTGGTAGCTAGCTGTATGTGTCTGCTCAGCTGTGG-ATAGATATTTAAGCTGTCTCTGAACTGGAGGTTACTGGTATTCTCTAAGGTATAGGAAAATTGATCTTATGTGGCTAACTGAAGTGGGAATAGTTGTAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263444 141 - 204787373 ATTTCATATGATAGCTAGCTGTATGTGTCTGCTCAACTGTGA-ATAGATATTTATGCTCTCTCTGAACTGGAGGTTATTGCTATTCTCTAAGGTATAGAAAAATTGTTCTTATGTGGCCAAGTGAGGTTGATATAGTTGTAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162651 141 - 192460366 ATTTCATATGATAGCTAGCTGTATGTGTCTGCTCAACTGTGA-ATAGATATTTATGCTCTCTCTGAACTGGAGGTTATTGCTATTCTCTAAGGTATAGAAAAATTGTTCTTATGTGGCCAAGTGAGGTTGATATAGTTGTAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182151 141 -  11645122 ATTTCATATGATAGCTAGCTGTATGTGTCTGCTCAACTGTGA-ATAGATATTTATGCTCTCTCTGAACTGGAGGTTATTGCTATTCTCTAAGGTATAGAAAAATTGTTCTTATGTGGCCAAGTGAGGTTGATATAGTTGTAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167348 141 -   6739814 ATTTCATATGATAGCTAGCTGTATGTGTCTGCTCAACTGTGA-ATAGATATTTATGCTCTCTCTGAACTGGAGGTTATTGCTATTCTCTAAGGTATAGAAAAATTGTTCTTATGTGGCCAAGTGAGGTTGATATAGTTGTAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57230 141 - 101219884 ATTTCATATGACAGCTAGCTGTGTGTGTCTGCTCAGCTGTGA-ATAGATATTTATGCTCTCTCTGAACTGGAGGTTATTGCTATTCTCTAAGATACAGAAAAATTGTTCTTATGTGGCCAAGTGAGGTTGATATAGTTGTAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179530 141 -    785044 ATTTCATATGATAGCTAGCTGTATGTGTCTGCTCAACTGTGA-ATAGATATTTATGCTCTCTCTGAACTGGAGGTTATTGCTATTCTCTAAGGTATAGAAAAATTGTTTTTATGTGGCCAAGTGAGGTTGATATAGTTGTAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68590 141 -  10971483 ATTTCATATGCTAGCTAGCTGTATGTGTCTGCTCAGCTGTGA-ATAGATATTTATGCTCTCTCTGAACTGGAGGTTATTGCTATTCTCTAAGGTATAGAAAAATTGTTCTTATGTGGCCAAGTGAGGTTGATATAGTTGTAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926448 141 -  13128814 ATTTCATCTGATAGCTAGCTGTATATGCCTGCTCAGCTGTGG-ACAGATATTTATGATCTCTCGGAACGGGAGGTTATTGGTATTCTCTAAGGTATAGGAACATTGATCTTATGTGGCCAACTGAGGTAGATATAGCTGTAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655029 141 +  14377064 ATTTCATCTGAGAGCTGGCTGTATATGCCTGCTCAGCTGTGG-ATAGATATTTATGATCTCTCTGAACTGGAGGTTATCGGTATTATCTAAGGTATAGGAACATTGATCTTATGTGGCCAACTGAGGTAGACATAGTTGTAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4123419 141 -   9889416 ATTTCATCTGATAGCTAGCTGTGTATGCCTGCTCAGCTGTGG-ATAGATATTTATGATCTCTCTGAACTGGAGGTTATTGATATTCTCTAAGGTATAGGAACATTGATCTTATGTGGCCAACTGAGGTAGATATAGTTGTAT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20749774 133 +  38779656 ATTTTACC----AGCTAACTCTATA----TACTCAGTGGTGACAGAGACATTTCTGATACTTCTG-ACTGGATGCTACTGGTATTTCCCAAGGTATGGGAAAATTGATCTCACATGGCCACATGATGTAGATGTAGTTGCAT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22698048 127 -  98207768 ACATCATTCAAGAATGGTCCACACA----TCCTCAGCTGGGG-AGACACATTTCTGATACC-CTG-ACTGGAGTTTAATGGTATTCACT---GGCTGGGAAAATTAATCTCA-ATGGCCAATTCACATAGATGTACAT----
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28787572 134 -  39895921 ATTTCACCCAA----TAGCTGTGAGGGTCTACTCAGCTGTGG-ACAGAGGTTGCTGATACCTCTG-ATTAGATATTATTGGTATTCTTTGAGGCATGGG-AAATTGATCTCACATGGCCAAGTGATATGGCTGGGG-TGCAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6684870 136 +   6883506 GTTTTATCTGATAGCTA----TAAGAGTCTGCTCAGCTGTGA-AAAAACATTTGTTTTATCTCTG-TTCAGAGGTTATTGCTATTCTCACACATGTGGGAAAATTGACCTCACATGGCCAAGTGATATGGATGTAGTTGTAT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30867257 490 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           77683 312 +   1229009 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=93994.000000
s hg38.chr14_GL000009v2_random    171156 7 +    201709 CAGTCAG
s panTro5.chr9                  41861212 7 + 116767853 CAGTCAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828765 7 + 205426864 CAGTCAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238220 7 +    245036 CAGTCAG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107956 7 -  86207423 CCGTCAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263585 7 - 204787373 CAGTCAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162792 7 - 192460366 CAGTCAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182292 7 -  11645122 CAGTCAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167489 7 -   6739814 CAGTCAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57371 7 - 101219884 CAGTCAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179671 7 -    785044 CAGTCAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68731 7 -  10971483 CAGTCAG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926589 7 -  13128814 CAGTCAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655170 7 +  14377064 CAGTCAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4123560 7 -   9889416 CAGTCAG
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           77995 7 +   1229009 TAGGAAA
i eulFla1.LGHW01000695v1       I 312 I 2
s otoGar3.GL873528              20749907 7 +  38779656 TAACCAG
i otoGar3.GL873528             C 0 I 2
s mm10.chr16                    22698175 7 -  98207768 CAGTCAG
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28787706 7 -  39895921 TAGCCAG
i canFam3.chr31                C 0 I 3
s dasNov3.JH568778               6685006 7 +   6883506 CAACCAG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30867257 490 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           68847 7998 +   1212331 I

a score=578268.000000
s hg38.chr14_GL000009v2_random    171163 55 +    201709 -ACAGTAATGA---TATAATCA---TGATAGTTTACATTTAACACAACTTACATGTGTTATA
s panTro5.chr9                  41861219 55 + 116767853 -ACAGTAATGA---TATAATCA---TGATAGTTTACATTTAACACAACTTACATGTGTTATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828772 55 + 205426864 -ACAGTAGTGA---TATAATCA---TGATAGTTTACATTTAACAGAATTTACTTGTGTTATA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238227 55 +    245036 -ACAGTAATGA---TATAATCA---TGATAGTTTACATTTAACAGAATTTACTTGTGTTATA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42107963 55 -  86207423 -ACAGTAATGA---TATAATCA---TGATAGTTTATATTTAACACAATTTACATGTGTCATA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263592 58 - 204787373 -ACAGTAATGATATTATAATCA---TGATAGTTTACATTTAACACAATTTACATGTGTTATA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162799 58 - 192460366 -ACAGTAATGATATTATAATCA---TGATAGTTTACATTTAACACAATTTACATGTGTTATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182299 58 -  11645122 -ACAGTAATGATATTATAATCA---TGATAGTTTACATTTAACACAATTTACATGTGTTATA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167496 58 -   6739814 -ACAGTAATGATATTATAATCA---TGATAGTTTACATTTAACACAATTTACATGTGTTATA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57378 58 - 101219884 -ACAGTAATGATATTATAATCA---TGATAGTTTACATTTAACACAATTTACTTGTGTTATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179678 58 -    785044 -ACAGTAATGATATTATAATCA---TGATAGTTTACATTTAACACAATTTACATGTGTTATA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68738 58 -  10971483 -ACAGTAATGATATTATAATCA---TGATAGTTTATATTTAACACCATTTACATGTGTTATA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926596 61 -  13128814 -ACAGTACTGAAATTAAAATCATAATGATAATTTATATTTAACACAATTTACATGTGTCATC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655177 61 +  14377064 -ACAGTAGTGAAATTGAAATCATAGTGATAATTTACATTTAACGCAATTTACATGTGTCATC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4123567 61 -   9889416 -ACCGTAGTGAAATTAAAATCATAATGATAATTTGCATTTAACACAATTTACATGTGTCATC
i aotNan1.NW_018487195v1       C 0 C 0
s eulMac1.LGHX01000692v1           76845 55 +   1212331 -AGGGTA---CTATAATTATCA---TGATCATTTACACTTAATACACTTTACATGTATTACT
i eulMac1.LGHX01000692v1       I 7998 I 3060
s eulFla1.LGHW01000695v1           78004 55 +   1229009 -AGGGTA---CTATAATTATCA---TGATCATTTACACTTAATACACTTTACATGTATTACT
i eulFla1.LGHW01000695v1       I 2 I 91
s otoGar3.GL873528              20749916 41 +  38779656 -AGAACAAAGTTCTAATCATCA---TGATAATTTACAC-----------------TATCACC
i otoGar3.GL873528             I 2 C 0
s mm10.chr16                    22698182 61 -  98207768 -GCAATAAGGATGCTATAGTCATCATGGTGATTTACTTTTTACACACCTTGCATTTATAACC
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28787716 55 -  39895921 ----ataataatattataattg---taataatttaCATACAGCCGATTTTACATGTGTTACC
i canFam3.chr31                I 3 C 0
s dasNov3.JH568778               6685013 60 +   6883506 GCAAATAATGATGTCATAATCAGAATGCTAACTCACAAATAAC--AGTTTTTATGTGTTAGC
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30867257 490 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I

a score=555656.000000
s hg38.chr14_GL000009v2_random    171218 50 +    201709 CTTTAGAAAGCACTTCATAGATATTATTAGTTCATAC------CATTTTCCCCTTA
s panTro5.chr9                  41861274 50 + 116767853 CTTTAGAAAGCACTTCATTCATATTATTACTTCATAC------CATTTTCCCCTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828827 50 + 205426864 CTTTAGAAAGCACTTCATAGATATTATTACTTAATAC------CATTTTCCCCTTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238282 50 +    245036 CTTTAGAAAGCACTTCATAGATATTATTACTTAATAC------CATTTTCCCCTTA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108018 50 -  86207423 CTTTCGAAAGCACTTCATAGATATTATTACTTAATAC------CATTTTCCCCTTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263650 50 - 204787373 CTTTAGAAAGCACTTCATAGATATTATTACTTAATAC------CATTTCCCCCTTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162857 50 - 192460366 CTTTAGAAAACACTTCATAGATATTATTACTTAATAC------CATTTCCCCCTTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182357 50 -  11645122 CTTTAGAAAGCACTTCATAGATATTATTACTTAATAC------CATTTCCCCCTTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167554 50 -   6739814 CTTTAGAAAGCACTTCATAGATATTATTACTTAATAC------CATTTCCCCCTTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57436 50 - 101219884 CTTTAGAAAGCACTTCATAGATATTATTACTTAATAC------CATTTTCCCCTTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179736 50 -    785044 CTTTAGAAAGCACTTCATAGATATTATTACTTAATAC------CATTTCCCCCTTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68796 50 -  10971483 CTTTAGAAAGCACTTCATAGATATTATTACTTAATAC------CATTTTCCCTTTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926657 50 -  13128814 CTTTAGAAAGCACTTCATAGATACTATTACTTAATGC------CATTTTCCCCTTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655238 50 +  14377064 CTTTAGAAAGCACTTCATAGATACTATTACTTCATAC------CATTTTCCCCTTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4123628 50 -   9889416 CTTTAGAAAGCACTTCATAGATACTATTACTTAATAC------CATTTTCCCCTTA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20749957 46 +  38779656 CTTTATAAAGCATTTCATAC---TCATTACTTCATAT------CATTTTTCCATA-
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22698243 47 -  98207768 --CCATGGACCCACTTAAAGACATTATTACTTAATAC------CATATTCCCTTA-
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28787771 49 -  39895921 CTTTAGAAAGCACTTCAAATACATTTTTACTTTATAT------TGTTTTCCTTTA-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6685073 44 +   6883506 CTTTAGAAAG------------GCTATTATTTCATATTTTTTGTATTTTCCCCTTG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30867257 490 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           78059 91 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=590531.000000
s hg38.chr14_GL000009v2_random    171268 43 +    201709 CCATATTTGTCTCTCCTTTC--------------TCTGCTGACTTCACAAAATGTCT
s panTro5.chr9                  41861324 43 + 116767853 TCATATTTGTCTCTCCTTTC--------------TCTGCTGACTTCAGAAAATGTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828877 43 + 205426864 CCATATTTGTCTCTCCTTTC--------------TCTGCTGACTTCAGAAAATGTCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238332 43 +    245036 CCATATTTGTCTCTCCTTTC--------------TCTGCTGACTTCAGAAAATGTCT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108068 42 -  86207423 CCATATTTGTCTGTCC-TTC--------------TCTGCTGACTTCAGAAAATGTCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263700 43 - 204787373 CCATATTTGTCTCTCCTTTC--------------TCTACTGACTTCAGAAAATGTCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162907 43 - 192460366 CCATATTTGTCTCTCCTTTC--------------TCTACTGACTTCAGAAAATGTCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182407 43 -  11645122 CCATATTTGTCTCTCCTTTC--------------TCTACTGACTTCAGAAAATGTCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167604 43 -   6739814 CCATATTTGTCTCTCCTTTC--------------TCTACTGACTTCAGAAAATGTCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57486 43 - 101219884 CCATATTTGTCTCTCGTTTC--------------TCTGCTGACTTCAGAAAATGTCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179786 43 -    785044 CCATATTTGTCTCTCCTTTC--------------TCTACTGACTTCAGAAAATGTCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68846 43 -  10971483 CCATATTTGTCTCTCCTTTC--------------TCTGCTGACTTCAGAAAATGTCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926707 43 -  13128814 ACATATTTGTCTCTCCTGTC--------------TCTGCTGATTTCAAAAAATGTCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655288 43 +  14377064 ACATATTTGTCTCTCCTGTC--------------TCTGCTGACTTCAAAAAATATCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4123678 43 -   9889416 ACATATTTGTCTCTCCTGTC--------------TCTGCTGACTTCAAAAAATGTCT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30867747 43 -  47401472 CCATATTTGTGTCTTCTATC--------------TCTGCTGACTTCAGAAAATGTCT
i micMur3.chr31                I 490 C 0
s otoGar3.GL873528              20750003 43 +  38779656 CCATATTTGTCTCTTCTGTC--------------TCTGCTGACTTCATAAAATATCT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22698290 43 -  98207768 TCACACTTGTCTCCCTTGTC--------------TCTGCTGACTACAGAAAATGTCT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28787820 57 -  39895921 CTGTATTTGTCTTTCTTGTTATTGAACAAGAATACTTGCTGATTTCAGAAAATGTCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6685117 55 +   6883506 CTGCATT--TCTATCCTGTTATTGAACTATCATATCTGCTGACTTTAGAAAATGTCT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           78059 91 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=78703.000000
s hg38.chr14_GL000009v2_random    171311  8 +    201709 GTTCC---ACA---
s panTro5.chr9                  41861367  8 + 116767853 CTTCC---ACA---
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828920  8 + 205426864 GTTCT---ACA---
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238375  8 +    245036 CTTCT---ACA---
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108110  8 -  86207423 CTTCC---ACA---
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263743  8 - 204787373 CTTCC---ACA---
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162950  8 - 192460366 CTTCC---ACA---
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182450  8 -  11645122 CTTCC---ACA---
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167647  8 -   6739814 CTTCC---ACA---
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57529  8 - 101219884 CTTCC---ACA---
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179829  8 -    785044 CTTCC---ACA---
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68889  8 -  10971483 CTTCC---ACA---
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926750 11 -  13128814 CTTCTACAACA---
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655331 11 +  14377064 CTTCCACAACA---
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4123721 11 -   9889416 CTTCCACAACA---
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30867790  8 -  47401472 TCTCC---ACA---
i micMur3.chr31                C 0 I 38
s eulFla1.LGHW01000695v1           78150  8 +   1229009 TCTCC---ATA---
i eulFla1.LGHW01000695v1       I 91 I 3
s otoGar3.GL873528              20750046  8 +  38779656 CCTCC---ACA---
i otoGar3.GL873528             C 0 I 3
s mm10.chr16                    22698333  8 -  98207768 CTCCC---ACA---
i mm10.chr16                   C 0 I 3
s canFam3.chr31                 28787877 10 -  39895921 TTTCC-CAACA---
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6685172 11 +   6883506 TTTCC---AAAACA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=334314.000000
s hg38.chr14_GL000009v2_random    171319 31 +    201709 CTACTCAGTTCATCTCCTTATTT-TGTCAAAA
s panTro5.chr9                  41861375 31 + 116767853 CTACTCAATTCATCTCCTTATTT-TGTCAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828928 32 + 205426864 CTACTCAATTCATCTCCTTATCTGTGTCAAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238383 32 +    245036 CTACTAAATTCATCTCCTTATCTGTGTCAAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108118 32 -  86207423 CTACTCAATTCATCTCCTTATCTTTGTCACAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263751 32 - 204787373 TTACTCAATTCATCTCCTTATCTTTGTCAAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162958 32 - 192460366 TTACTCAATTCATCTCCTTATCTTTGTCAAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182458 32 -  11645122 TTACTCAATTCATCTCCTTATCTTTGTCAAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167655 32 -   6739814 TTACTCAATTCATCTCCTTATCTTTGTCAAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57537 32 - 101219884 TTACTCAATTCATCTCCTTATCTTTGTCAAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179837 32 -    785044 TTACTCAATTCATCTCCTTATCTTTGTCAAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68897 32 -  10971483 TTACTCAATTCATCTCCTTATCTTTGTCAAAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926761 28 -  13128814 CCACTCAA-TCATCTCCTT---ATTGTCAAAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655342 31 +  14377064 TCACTCAA-TCATCTCCTTATCATTGTCAAAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4123732 31 -   9889416 CCACTCAA-TCATCTCCTTATCATTGTCAAAA
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           78161 31 +   1229009 GTATTCAA-TCATCTCCTTCCTTTTGTCAAAA
i eulFla1.LGHW01000695v1       I 3 I 4
s otoGar3.GL873528              20750057 27 +  38779656 GCATTCAA-TCTTCTCCCCA----TGTCAAAA
i otoGar3.GL873528             I 3 I 4
s mm10.chr16                    22698344 31 -  98207768 CTCTTCAA-TCATCTTCACTCCGCTGTCCAAA
i mm10.chr16                   I 3 I 4
s canFam3.chr31                 28787887 31 -  39895921 TTATTCAA-TCATCTCCTTCCCTTTGTCAAAA
i canFam3.chr31                C 0 I 10
s dasNov3.JH568778               6685183 31 +   6883506 CTGTTCAA-ATATTTTCTTTCCTTTGTTAAAA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30867798 38 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=968097.000000
s hg38.chr14_GL000009v2_random    171350 83 +    201709 TTTTAAGTATCAGAGTCTCC-----------AAAAAAAAA------TTCCAGACAAGTCTCATCAGCTTTCGGTCATTGATTAATCG--------ATGCCCTTAGAGG-
s panTro5.chr9                  41861406 82 + 116767853 TTTTAAGTCTCAGAGTCTCC-----------AAAAAAAA-------TTCCAGACAAGTCTCATCAGCTTTCGGTCATTGATTAATCG--------ATATCCTTAGAGG-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77828960 80 + 205426864 TTTTAAGTCTCAGAGTCTCC-----------AAAAAAA--------TTCCAGATAA-TCTCATCAGCTTTTGGTCATTGATTAATCA--------ATGCCCTTAGAGG-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238415 80 +    245036 TTTTAAGTCTCAGAGTCTCC-----------AAAAAAA--------TTCCAGATAA-TCTCATCAGCTTTCGGTCATTGATTAATCG--------ATGCCCTTAGAGG-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108150 80 -  86207423 TTTTAAGTCTCAGAGTCTCC-----------AGAAAA---------TCCCAGACAAGTCTCATCAGCTTCCAGTCATTGATTAATCG--------ATGCCCTTAGAGG-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263783 89 - 204787373 TTTTAAGTCTCAGAGTCTCC-----------AAAAAAAAAAAAAAATTCCAGACAAGTGTCATCAGCTTTCAGTCATTGATTAATCA--------GTGTCCTTAGAGG-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    162990 89 - 192460366 TTTTAAGTCTCAGAGTCTCC-----------AAAAAAAAAAAAAAATTCCAGACAAGTGTCATCAGCTTTCAGTCATTGATTAATCA--------GTGTCCTTAGAGG-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182490 88 -  11645122 TTTTAAGTCTCAGAGTCTCC------------AAAAAAAAAAAAAATTCCAGACAAGTGTCATCAGCTTTCAGTCATTGATTAATCA--------GTGTCCTTAGAGG-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167687 90 -   6739814 TTTTAAGTCTCAGAGTCTCC----------AAAAAAAAAAAAAAAATTCCAGACAAGTATCATCAGCTTTCAGTCATTGATTAATCA--------ATGTCCTTACAGG-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57569 90 - 101219884 TTTTAAGTCTCAGAGTCTCC----------AAAAAAAAAAAAAAAATTCCAGACAAGTCTCATCAGATTTCAGTCATTGATTAATCG--------ATGTCCTTAGAGG-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179869 91 -    785044 TTTTAAGTCTCAGAGTCTCC---------aaaaaaaaaaaaaaaaaTTCCAGACAAGTGTCATCAGCTTTCAGTCATTGATTAATCG--------ATGTCCTTACAGG-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           68929 90 -  10971483 TTTTAAGTCTCAGAGTCTCC----------AAAAAAAAAAAAAAATTTCCAGACAAGTCTCATCAGCTTTCAGTCATTGATTAATTG--------ATGTCCTTAGAGG-
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926789 94 -  13128814 CTT----TCTC--AGTCTCCaaaaaaaaaaaaaaaaaaaaaaaaaaTTCCAGACAAGTCTCATCAGCTTCCAGTCATTGATTCACCA--------ATATCCTTAGAGA-
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655373 89 +  14377064 CTTTAAGTCTCAGAGTCTCC-----------AAAAAAAAAAAAAAATTCCAGACAAGTCTCATCAGCTTCCAGTCATTGATTCACCG--------ATATCCTTAGAGA-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4123763 83 -   9889416 CTTTAAGTCTCAGAGTCTCC-----------------AAAAAAAAATTCCAGACAAGTCTCATCAGCTTCCAGTCATTGATTCACCG--------ATATCCTTAGAGA-
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30867836 82 -  47401472 TTTTAAGTCTCAGAGTCTCC-----------AAGACAATA------TTCCAGACAAGCCTCA-AAGTTTCCAGTTACTGATTCATCA--------ATGTCTTTAGAGA-
i micMur3.chr31                I 38 C 0
s eulFla1.LGHW01000695v1           78196 82 +   1229009 TTTTTAGTCTCAGAGTCTCC-----------AAGGCAATA------TTCCAGACATGCCTCA-AAGCTTCCCATCACTGATTCACAA--------ATGTCTTTAGCAA-
i eulFla1.LGHW01000695v1       I 4 I 497
s otoGar3.GL873528              20750088 82 +  38779656 TTTTAAGTCTGAGAGTCTCC-----------AAGACAGTA------TCCCAGACAAGCCTCATCAGTTTACAGCCACTGATTCACC---------ATGTCCTTAGAGA-
i otoGar3.GL873528             I 4 C 0
s mm10.chr16                    22698379 82 -  98207768 TCTTAAGTCTCAGAGTCTCC-----------AAGATAATA------TTCCAGACAAGCCTCATCAGCTTCCAGTTACTGATTCACC---------ATGCCCTTAGAGA-
i mm10.chr16                   I 4 C 0
s canFam3.chr31                 28787928 77 -  39895921 TTTTAAGACTTAGGATCTCC-----------AACAGAATA------TTTCTAACAAGCCTCATGAGTTTCCAGTCGCTGATTCACCG--------TTGTGAT-------
i canFam3.chr31                I 10 C 0
s dasNov3.JH568778               6685214 88 +   6883506 CTTT--GTCTCAAGGTCTCC-----------ATGAAAATA------TTTCAGACAAGA--CATCAGTTTCCAATCACTAATTCTCCACAGCTATCTCATCCTTAGAGTA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=3021561.000000
s hg38.chr14_GL000009v2_random    171433 229 +    201709 CTT--TCCCTTCCCCTTCTCAATTTAACATAGCTTCCCAATACACTTGCCAGTAAAACAAAGTTGTTTA---------TATGGTTTTGTATTTCTTCCTGCTGAA-TTATGAACATTTTTTCATATTGACATTGATTTCCATCTGGCCATGAAATACTCAAGGTGAAGACAATGAAACAAAattgttaatatttatcaagagccaggtactgttttcagtgtcctagaagcataaactagt
s panTro5.chr9                  41861488 229 + 116767853 CTT--TCCCTTCCCCTTCTCAATTTAACATAGCTTCCAAATACACTTGCCAGTAAAACAAAGTTGTTTA---------TATGGTTTTGTATTTCTTCCTGCTGAA-TTATGAACATTTTTTCATATTGACATTGATTTCCATCTGGCCATGAAATACTCAAGGTGAAGAAAATGAAACAAAattgttaatatttatcaagagccaggtactgttttcagtgtcctagaagcataaactagt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829040 229 + 205426864 CTT--TCCCTTCCCTTTCTCAATTTAACATAGCTTCCAAATACACTTGCCAGTAAAACAGAGTTGTTTA---------TATGGTTTTGTATTTCTTCCTGTTGAA-TTATGAACATTTTTTCATATTGACATTGATTTCCATCTGGCCATGAAATACTCGAGGTGAAGAAAATGAAACAAAATGGTTAATATttatcaagagccaggtactgttttaagtttcctagaagcataaactagt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238495 228 +    245036 CTT--TCCCTTCCTCTTCTC-ATTTAACATAGCTTCCAAATACACTTGCCAGTAAAACAGAGTTGTTTA---------TATGGTTTTCTATTTCTTCCTGTTGAA-TTATGAACATTTTTTCATATTGACATTGATTTCCATCTGGCCATGAAATACTCGAGGTGAAGAAAATGAAACAAAATGGTTAATATTTATCAAGATccaggtactgttttaagtttcctagaagcataaactagt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108230 227 -  86207423 CTT--TCCCTTCCCTTTCTCAATTTAACATAGCTTCCAAATATACTTGCCAGTAAAACAAAGTTGTTTA---------TAAGGTTTTGTATTTCTTCCTGTTGAA-TTATGAACATTTTTTCATATTGACATTGATTTCCATCTGGCCATGAAATACTCAAGGTGAAGAAAATGATACAAAATGGTTAAAATGTATCAAGAgccaggta--gttttaagtgtcctagaagcataaactagt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204263872 229 - 204787373 CTT--TCCCTTCCCCGTCTCAATTTAACACAGCTTCCAAATACACTTGCCAGTAAAACAAAGTTGTTTA---------TATGATTTTGTATTTCTTCCTGTTGAA-TTATGAACATTTATTCATATTGACATTGATTTCAATCTGGCCATGAAATACTCAAGGTGAAGAAAATGATACAAAATGGTCAATATttatcaagagccaggtacagttttaagtgtcttagaagcataaacaagt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163079 229 - 192460366 CTT--TCCCTTCCCCGTCTCAATTTAACACAGCTTCCAAATACACTTGCCAGTAAAACAAAGTTGTTTA---------TATGGTTTTGTATTTCTTCCTGTTGAA-TTATGAACATTTATTCATATTGACATTGATTTCAATCTGGCCATGAAATACTCAAGGTGAAGAAAATGATACAAAATGGTCAATATttatcaagagccaggtacagttttaagtgtcttagaagcataaacaagt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182578 229 -  11645122 CTT--TCCCTTCCCCGTCTCAATTTAACACAGCTTCCAAATACACTTGCCAGTAAAACAAAGTTGTTTA---------TATGGTTTTGTATTTCTTCCTGTTGAA-TTATGAACATTTATTCATATTGACATTGATTTCAATCTGGCCATGAAATACTCAAGGTGAAGAAAATGATACAAAATGGTCGATATttatcaagagccaggtacagttttaagtgtcttagaaacataaacaagt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          167777 229 -   6739814 CTT--TCCCTTCCCCTTCTCAATTTAAGATCGCTTCCAAATACACTTGCCAGTAAAACAAAGTTGTTTA---------TATGGTTTTGTATTTCTTCCTGTTGAA-TTATGAACATTTATTCATATTGACATTGATTTCAATCTGGTCATGAAATACTCAAGGTGAAGAAAATGATACAAAATGGTCAATATttatcaagagccaggtacagttttaagtgtcttagaagcataaacaagt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57659 226 - 101219884 CTT--TCCCTTCCCCTTCTCAATTTAACATAGCTTCCAAATACACTTGCCAGTAAAACAAAGTTGTTTA---------TATGGTTTTGTATTTCTTCCTGTTGAA-TTATGAACATTTATTCATATTGACATTGATTTCAATCTGGCCATGAAATACTCAAGGTGAAGAAAATGATACAAAATGGTCAATATTTATCAAGAGCCAGGTATAGTGT---GTGTCCTAGAAGCATAAACAAGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          179960 229 -    785044 CTT--TCCCTTCCCCTTCTCAATTTAACATAGCTTCCAAATACACTTGCCAGTAAAACAAAGTTGTTTA---------TATGGTGTTGTATTTCTTCCTGTTGAA-TTATGAACATTTATTCATATTGACATTGATTTCAATCTGGCCATGAAATACTCAAGGTGAAGAAAATGATACAAAATGGTCAATATttatcaagagccaggtacagttttaagtgtcttagaagcataaacaagt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69019 231 -  10971483 CTTTCTCCCTTCCCCTTCTCAATTTAACATAGCTTCCAAATACACTTGCCAGTAAAACAAAGTTGTTTA---------TATGGTTTTGTATTTCTTCCTGTTGAA-TTATGAACATTTATTCATATTGACATTGATTTCCATCTGGCCATGAAATACTCAAGGTGAAGAAAATGATACAAAATGGTCAATATttatcaagagccaggtacaattttaagtgtcctagaagcataaataagt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10926883 224 -  13128814 ATT--TCCCTT-CCCTTCTCAATTTAACATAGCTTCCAAATACATTTTCCAGTAAAACAAAGTTGTTTA---------TATGGTTTTGTATTTCCTCCTGTTGAG-TTATGGACATTTATTCATATTGACATTGATCTCCATCTGGCCATGAAAT----AAGGTGAAGAAAATGATACAAAATGGTTAATATttatcaagagcaaggtactgttttaagtgtcctagaagcatacactagt
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655462 229 +  14377064 CTT--TCCCTTCCCCTTCTCAATTTAACATAGCTTCCAAATACACTTTCCAGTAAAACAAAGTTGTTTA---------TATGGTTTTGTATTTCCTCCTGTTGAA-TTATGGACATTTATTCATATTGACATTGATCTCCATCTGGCCATGAAATACTCAAGGTGAAGAAAATGATACAAAATGGTTAATATttatcaagagccaggtactgttttaagtgtcctagaagcatacactagt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4123846 229 -   9889416 CTT--TCCCTTCCCCTTCTCCATTTAACATAGCTTCCAAATACACTTTCCAGTAAAACAAAGTTGTTTA---------TATGGTTTTGTATTTCTTCCTGTTGAA-TTATGGACATTTATTCATATTGACATTGATCTCCATCTGGCCTTGAAATACTCAAGGTGAAGAAAATGATACAAAATGGTTAATATttatcaagagccaggtactgttttaagtgtcctagaagcataaactagt
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30867918 228 -  47401472 CTT--TTCCTTCCCCTTCTTAATTTAAAATGGCTTTCAAATATGCTTTCCAGTAAAATGGAGATGTTTA---------CATGGTTTTGTATTTCTTCCTGTTGAC-TTACGAACATTTATCCATGTTGACATTGATTTCTATCTGGCCATGAACTACTC-AGGTGAAGAAAATGGTACAAGATGGTTAATATGTATTGAGAGATaggtactgttctcagtctcctagaagcataaactagt
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20750170 229 +  38779656 CTT--TTCCTTCCGCTCCTTAATTTAACAGAGCTTTCAAACATGCTTTCCCGTAAAATGGAGCTGTTTATGCTGTTTCTATAGTTGAGTATTTCTTCCTGTTGAC-TTACAAGCATTTATCCACCTGGAACCTGATTT--------CCATGAACTACTC-AAGTGAAGAAAACAGCACAAGGTGGTTAATATGTATTAAGAGATAGGTAGTCTTCTAAGTGTTCTGGGAGCATTAACTAGT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22698461 221 -  98207768 -CC--TTCTTCCCCCTTCTCAATTTAACATAGCTTTCAAATAC-CTTTCCAGTAAAATGAAGCTGTTTA---------TATGGTTTTATATTTCCTCCTGTAGAC-TTGTGAGCATTTATCCACATTGACATTGATTTCCTTCTGGCTGTAAACTCATCAAGATGAAGAAAACGATACATGATGGGTTTTTTTGAGCAAGAGTCAGGT---GTTT---GTTTCCTACATGTAGAAGCTAAT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28788005 214 -  39895921 CTC--ATCCTTCCCCTTCTCAATTTAACAGAGCTTTCAAATGTGCTTTACAGTCAAATAGAATTGTTTC---------TATGGTTTTGCATTTCTTCCTGGTGCCTTTATAACCATTTATTCATCTTGACATTGATTTCTATCAGACCATAAGCTATACAAGGTGAAGAAAATGGTACAAGATGACTAATATTTGTCAAAAGCCAGCTACTGTTGTAAGTAT----------------AGT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6685302 229 +   6883506 TTT--TCCCTTCCCCTTCCCAATTTAACATAGCTTTCAAAAGTGCTTTCCAGTCAAATGGAGTTGTTTA---------TATGGTTTTGTATTTCTTCCTGTTGCTTTTATGGGCATTTATCCATATTGATATTGATTCCTATTAGGCTATGTGCTTCTCAAGGTGATGAAGAGGGTATGAGATGACTAATATTTATTGAAAGTCAGCTGATACCTCA-GTGTCCTACAAGTATAAACTAGT
i dasNov3.JH568778             C 0 I 815
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           78278 497 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=1092048.000000
s hg38.chr14_GL000009v2_random    171662 98 +    201709 gtaatgctcaccagctcatatgagaggcaaaaatggatgaaactataaaaccaagacacagagagttaagggaaatttcccaagatcacacagccact
s panTro5.chr9                  41861717 98 + 116767853 gtaatgctcaccagctcatatgagaggcaaaaatggatgaaactataaaaccaagacacagagagttaagggaaatttcccaagatcacatagccact
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829269 96 + 205426864 gtgatgctcaccagctcatatgagaggcaaaaatggatgaaactataaaaccaagtcac--agagttaagggaaatttcccaagatcacacagccact
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238723 98 +    245036 gtgatgctcaccagctcatatgagaggcaaaaatggatgaaactataaaaccaagacacagagagttaagggaaatttcccaagatcacacagccact
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108457 98 -  86207423 gtgatgctcaccagctcatatgagaggcaaaaatggatgaaacgataaaaccaagacacagagagttaagggaaatttcccaagatcacacagccact
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264101 98 - 204787373 gtgatgctcaccagctcacatgagaggcaaaaatggatgaaactataaaaccaagacacagagagttaagggaaatttcccaagatcacacagccact
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163308 98 - 192460366 gtgatgctcaccagctcacatgagaggcaaaaatggatgaaactataaaaccaagacacagagagttaagggaaatttcccaagatcacacagccact
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182807 98 -  11645122 gtgatgctcaccagctcacatgagaggcaaaaatggatgaaactataaaacaaagacacagagagttaagggaaatttcccaagatcacacagccact
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168006 98 -   6739814 gtgatgctcaccagctcacatgagaggcaaaaatggatgaaactataaaaccaagacacagagagttaagggaaatttcccaagatcacacagtcact
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57885 98 - 101219884 GTGATGCTCACCAGCTCACATGAGAGGCAAAAATGGATGAAACTATAaaaccaagacacagagagttaagggaaatttcccaagatcacacagccact
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180189 98 -    785044 gtgatgctcactagctcacatgagaggcaaaaatggatgaaactataaaaccaagacacagagagttaagggaaatttcccaagatcacacagccact
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69250 98 -  10971483 gtgatgctcaccagctcacatgagaggcaaaaatggatgaaactataaaaccaagacacagagagttaaaggaaatttcccaagatcacacagccact
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927107 96 -  13128814 gtgattctcatgagttcatatgagaggcaaaaatggatgaaactataaaaccaagtcac--aatatttagggaaattttccaagatcacacagctact
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655691 95 +  14377064 gtgattctcacgagttcatatgagaggc-aaaatggatgaaactataaaaccaagtcac--agtatttagggaaattttccaagatcacacagccact
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124075 96 -   9889416 gtgattctcacgagttcatatgagaggcaaaaatgggtgaaattataaaatcaagtcac--agaatttagggaaattttccaagaacacacagacact
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30868146 98 -  47401472 ataatgctcaccagctcatatgagaggcataaagtggtataaataagaaactaagatacagagaggtaagggaaataacccaagatcatacaattatt
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20750399 97 +  38779656 ATAACAGTTACCAGTTCATAGTAGAGGCATAAACTGGCAAAAATATgaaactaagatatacagaggt-agggaaatctccgaagatcacttaaatact
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22698682 88 -  98207768 GGGATTGTCCCTAGTCC--ATGAGAGGCAAAACTAGGTCAAACTAAGACTTAAAGATAC--------AAGTGGTCTTTCCCGAAATCACAAAGCTTCT
i mm10.chr16                   C 0 I 561
s canFam3.chr31                 28788219 94 -  39895921 GTAAT----AGCAGCCCATAAGAGAGGGACAAACTGATGCATATGTAaaactaaggcacagagaggtaagggaaatttcccagaattgcacagctgcc
i canFam3.chr31                C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           78278 497 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I
e dasNov3.JH568778               6685531 815 +   6883506 I

a score=101996.000000
s hg38.chr14_GL000009v2_random    171760 12 +    201709 gaggctatgaac
s panTro5.chr9                  41861815 12 + 116767853 gaggatatgaac
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829365 12 + 205426864 aaggatatgaac
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238821 12 +    245036 aaggatatgaac
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108555 12 -  86207423 aaggatatgaac
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264199 12 - 204787373 aaggatatgaac
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163406 12 - 192460366 aaggatatgaac
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182905 12 -  11645122 aaagatatgaac
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168104 12 -   6739814 aaggatatgaac
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57983 12 - 101219884 aaggatatgaac
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180287 12 -    785044 aaggatatgaac
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69348 12 -  10971483 aaggatatgaac
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927203 12 -  13128814 aaagatatgaac
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655786 12 +  14377064 aaagatatgaac
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124171 12 -   9889416 aaagatacgaac
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30868244 11 -  47401472 aggaa-atgagt
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20750496  8 +  38779656 ggga----gagc
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28788313 12 -  39895921 aaagggaggagg
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22698770 561 -  98207768 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           78278 497 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I
e dasNov3.JH568778               6685531 815 +   6883506 I

a score=987316.000000
s hg38.chr14_GL000009v2_random    171772 82 +    201709 tagattttgacttcaggctatttaccccagaacctgtgctttcaaccgtcatttgtactgCTTCCCTAAATTACACTTGACT
s panTro5.chr9                  41861827 82 + 116767853 tagattttgacttcaggctatttaccccagaacctgtgctttcaaccatcatttgtactgCTTCCCTAAATTACACTTGAGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829377 82 + 205426864 tagattttgacttcaggttatttaccccagagcctgtgctttcaaccatcatttgtactgCTTCCCTTAATTATACTTGAct
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238833 82 +    245036 tagattttgacttcaggctatttaccccagagcctgtgctttcaaccgtcatttgtactgCTTCCCTAAATTATACTTGAct
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108567 82 -  86207423 taggttttgacttcaggctacttatcccagagcctgtgctttcaaccatcatttgtactgCTTCCCTAAATTACACTCaact
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264211 82 - 204787373 tagattttgacttcaggctgtttaccccagagcctgtgctttcaaccatcatttgtactgCTTCCCTAAATTATACTTGAct
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163418 82 - 192460366 tagattttgacttcaggctgtttaccccagagcctgtgctttcaaccatcatttgtactgCTTCCCTAAATTATACTTGAct
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182917 82 -  11645122 tagattttgacttcaggctgtttaccccagagcctgtgctttcaaccatcatttgtactgCTTCCCTAAATTATACTTGAct
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168116 82 -   6739814 cagattttgacttcaggctgtttaccccagagcctgtgctttcaaccatcatttgtactgCTTCCCTAAATTATACTTGAct
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    57995 82 - 101219884 tagattttgacttcaggctgtttaccccagagcctgtgctttcaaccatcatttgtactgCTTCCCTAAATTATACTTGAct
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180299 82 -    785044 cagattttgacttcaggctgtttaccccagagcctgtgctttcaaccatcatttgtactgCTTCCCTAAATTATACTTGAct
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69360 82 -  10971483 tagattttgacttcaggctgtttaccccagagcctgtgctttcaaccatcatttgtactgCTTCCCTAAATTATACTTGATT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927215 82 -  13128814 tacattttgacttcaggctatttgccccagagcctgtgctttcaaccatcatttgtactgCTTCCTGAAATTATGCTTGAct
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655798 82 +  14377064 tacattttcacttcagggtatttgccccagagcctgtgctttcaaccatcatttgtactgCTTCCTGAAATTATACTTgact
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124183 82 -   9889416 tacattttgacttcaggctatttgccccagagcctgtgctttcaaccatcatttgtactgCTTCCCGAAATTATACTTGAct
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30868255 82 -  47401472 taggttttgtatttaagccatttgtcccaaattccatgctttcaacaatcatttgtgctgCTTCCCTAAATTGTACTCTACT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20750504 78 +  38779656 taggttttgaatgtaagcctcct---ccaaagtccatgctttcaaccaTCGTTT-CCCTGCTTCCCTAAGTTACACTCTACT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28788325 66 -  39895921 taaaattt--------------taatcaagagcctatgctttcaaccataattt-tgct-cttctcttaattatactttact
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6686346 82 +   6883506 TAGATttttaattcagactgtttatctcagagcccatgctttcaactactatttatactACCTTCCTAAATAATACTGTgct
i dasNov3.JH568778             I 815 C 0
e mm10.chr16                    22698770 561 -  98207768 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           78278 497 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=561004.000000
s hg38.chr14_GL000009v2_random    171854 50 +    201709 ACACTGTGACAtcaaatttcacctatgacactgattatctgggaaacttt
s panTro5.chr9                  41861909 50 + 116767853 ACACTGTGACAtcagatttcacctatgacactgattatctggggaacttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829459 50 + 205426864 agactgtgacatcaaatttcacctatgacactgattatctggggaactct
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238915 50 +    245036 agactgtgacatcaaatttcacctatgacactgattatctggggaactct
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108649 50 -  86207423 agactgtgacatcaaatttcacctatgacactgattatctggggaacttt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264293 49 - 204787373 agactgtgacatcaaatttcacctatgacactgattattt-ggaaacttt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163500 49 - 192460366 agactgtgacatcaaatttcacctatgacactgattattt-ggaaacttt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          182999 49 -  11645122 agactgtgacatcaaatttcacctatgacactgattattt-gggaacttt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168198 49 -   6739814 agactgtgacatcaaatttcacctatgacactgattattt-ggaaacttt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58077 50 - 101219884 agactgtgacatcaaatttcacctatgacactgattatctggggaacttt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180381 49 -    785044 agactgtgacatcaaatttcacctatgacactgattattt-gggaacttt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69442 50 -  10971483 agactgtgacgtcaaatttcacctatgacactgattatctggggaacttt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927297 50 -  13128814 agactgggacatcaaatctcacctgtgacactgattatctggggaacttt
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655880 50 +  14377064 aggctgggacatcaaatctcacctatggcactgattatctggggaacttt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124265 50 -   9889416 agactgggacatcaaatctcacctatgacactgattatctggggaacttt
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30868337 50 -  47401472 AGAATATGACAtcaaatttcaactttgccactggttatctgggtgacatt
i micMur3.chr31                C 0 I 59
s otoGar3.GL873528              20750582 50 +  38779656 AGATGGTGACAtccaattccagctatgccactcattatctgggtgacatt
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22699331 46 -  98207768 ACACTGAGAAATAAAATTTCA--TATCAAATT--CTATCTTGGTAATATT
i mm10.chr16                   I 561 I 3
s canFam3.chr31                 28788391 50 -  39895921 atCCTGtgacttcaaatatcaacaatgtcactgattatccaagtgttatt
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6686428 40 +   6883506 agactgtgatttcaaatttcagcaatatc--------tctgtggcacc--
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           78278 497 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=330912.000000
s hg38.chr14_GL000009v2_random    171904 32 +    201709 gcaacttattctgaatatgactcagttttctt
s panTro5.chr9                  41861959 32 + 116767853 gcaacttattctgaatgtgattcagttttctt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829509 31 + 205426864 gcaacttattctgaatatgactcag-tttctt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238965 31 +    245036 gcaacttattctgaatatgactcag-tttcct
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108699 32 -  86207423 gcaacttattctgaatatgactcagttttctt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264342 32 - 204787373 gcaacttattctgtatatgactcagttttctt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163549 32 - 192460366 gcaacttattctgtatatgactcagttttctt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183048 32 -  11645122 gcaacttattctgtatatgactcagttttctt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168247 32 -   6739814 gcaacttattctgtatatgacttagttttctt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58127 27 - 101219884 gcaacttattctgtatatgactcag-----tt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180430 32 -    785044 gcaacttattctgtatatgactcagttttctt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69492 32 -  10971483 gcaacttattctgtatatgactcagttttctt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927347 32 -  13128814 gaaacttgctctgtatatgactcagtttcttt
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655930 32 +  14377064 gaaacttactctgtgtatgactcagtttcctt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124315 32 -   9889416 gaaacttcctctgtatatgactcagtttcctt
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20750632 28 +  38779656 ----ttcgttctctatttgacccagtttcctc
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22699380 32 -  98207768 TCCTACTACTGTCTAGATAACTCAGTTTCTTT
i mm10.chr16                   I 3 C 0
s canFam3.chr31                 28788441 32 -  39895921 acaacttactatctataagactcaattttctt
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6686468 32 +   6883506 acaacctactctttatatgattcagtttcttt
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30868387 59 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           78278 497 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=311735.000000
s hg38.chr14_GL000009v2_random    171936 31 +    201709 ttctgtacagagataaagtcagtatatactc
s panTro5.chr9                  41861991 31 + 116767853 ttctgtacagagataaagtcagtatatactg
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829540 31 + 205426864 ttctgtacagagataaagtcagtatatacct
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          238996 31 +    245036 ttctgtacagagataaagtcagtatatacct
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108731 31 -  86207423 ttctgtgcagagataaagtcagtatatacct
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264374 31 - 204787373 ttctgtgcagagataaagttggtatatacct
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163581 31 - 192460366 ttctgtgcagagataaagttggtatatacct
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183080 31 -  11645122 ttctgtgcagagataaagttggtatatacct
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168279 31 -   6739814 ttctgtgcagagataaagttggtatatacct
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58154 31 - 101219884 ttctgtacagagataaagtcagtatatacct
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180462 31 -    785044 ttctgtgcagagataaagttggtatatacct
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69524 31 -  10971483 ttctgtacagagacaaagttggtatatacct
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927379 31 -  13128814 ttctgtaaagtgattaagtcagtagatagct
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655962 26 +  14377064 -----taaagtgattaagtcagtagatagct
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124347 31 -   9889416 ttctgtaaagcgataaagtcagtagatagct
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           78775 31 +   1229009 ctttgtgaaataatgaagtgagtatatactt
i eulFla1.LGHW01000695v1       I 497 I 285
s otoGar3.GL873528              20750660 31 +  38779656 ctttataaaataatgaagttggcatatactc
i otoGar3.GL873528             C 0 I 1
s mm10.chr16                    22699412 30 -  98207768 TCCCATGTTGCAATGAAGTTTGTATATCTT-
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28788473 31 -  39895921 ctctgtggaattataaaatcagtatatatct
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6686500 29 +   6883506 --ctctaaaacctgatagttggtatatacct
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30868387 59 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=10000.000000
s hg38.chr14_GL000009v2_random    171967 1 +    201709 c
s panTro5.chr9                  41862022 1 + 116767853 c
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829571 1 + 205426864 c
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239027 1 +    245036 c
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108762 1 -  86207423 c
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264405 1 - 204787373 c
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163612 1 - 192460366 c
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183111 1 -  11645122 c
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168310 1 -   6739814 c
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58185 1 - 101219884 c
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180493 1 -    785044 c
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69555 1 -  10971483 c
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927410 1 -  13128814 g
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655988 1 +  14377064 c
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124378 1 -   9889416 c
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28788504 1 -  39895921 c
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6686529 1 +   6883506 c
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22699442 0 -  98207768 C
e micMur3.chr31                 30868387 59 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           78806 285 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I
e otoGar3.GL873528              20750691 1 +  38779656 I

a score=2928336.000000
s hg38.chr14_GL000009v2_random    171968 276 +    201709 atagattcgttataaggattatatgaaatgacacatgagaaggctttaaaag-gacttggaaagcaataagcTTTTTTGTTTTCAATCA-TTTTTC------------------------AATAGGTTATCAGTGTTGTGAAGGGTTCATGAAAAATGACTTTGGGCTCAGTGAGTAACTGAAATGTTGTTGCTTAATAGTGTGTTTAA-----TATTAATATAATAGTAACAAATGTTG----TT-----ATTGTTGAG--TAATAGTTATTTG-------------GCTTTTCACTGCTTTTCTTT--TCT---------------------AGTGTTTTAG--------TCAGAGACTT
s panTro5.chr9                  41862023 276 + 116767853 atagattcgttataaggattatatgaaatgacacatgagaaggctttaaaag-gacttggaaagcaataagcTTTTTTGTTTTCAATCA-TTTTTC------------------------AATAGGTTATCAGTGTTGTGAATGGTTCATGAAAAATGACTTTGGGCTCAGTGAGTAACTGAAATGTTGTGGCTTAATAGTGTGTTTAA-----TATTAATATAATAGTAACAAATGTTG----TT-----ATTGTTGAG--TAATAGTTATTTG-------------GCTTTTCACTGCTTTTCTTT--TCT---------------------AGTGTTTAAG--------TCAGAGACTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829572 273 + 205426864 atagattcgttataaggattataagaaatgacacgtgagaaggctttaaaag-gacttggagagcaataagcTTTTTTGTTTTCAGTCA-TTTTTC------------------------AATAGATTATCAGTGTCATGAATGGTTCATGAAAAATGACTTTGGGCTCAGTGAGTAACTGAAATGTTGTTGCTTAATAGTGTGTTtaa-----tattaatataatagtaataaatgttg----tt-----attgttgag--taatagttatTTT-------------TCTTTTCACTGCTTTTCTTT--CCC---------------------AATGTTTTAG--------TCAGAGA---
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239028 273 +    245036 atagattcgttataaggattataagaaatgacacatgagaaggctttaaaag-gacttggaaagcaataagcTTTTTTGTTTTCAGTCA-TTTTTC------------------------AATAGGTTATCAGTGTCATGAATGGTTCATGAAAAATGACTTGGGGCTCAGTGAGTAACTGAAATGTTGTTGCTTAATAGTGTGTTTAA-----TATTAATATAATAGTAATAAATGTTG----TT-----ATTGTTGAG--TGATAGTTATTTT-------------TCTTTTCACTGCTTTTCTTT--CCC---------------------AGTGTTTTAG--------TCAGAGA---
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42108763 272 -  86207423 atagattcgttataaggattatatgaaatgacacatgagaaggcttcaaaag-gacttggaaagcaataagcTTTTTTGTTTTCAATCA-TTTTTC------------------------AATAGGTTATCAGTGTTGTGAATGGTTCATGAAAAATGACTTTGGGCTCAGTGAGTAACTGAAATGAT---GCTTAATAGTGTGTtt-a-----tattagtataatagtaataaatgttg----tt-----attgttgag--taatagttatTTT-------------GCTTTTCACTGCTTTTCTTT--TCC---------------------AGTGATTTAG--------TCAGAGACTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264406 271 - 204787373 atagattcattataaggattatatgaaatgacacatgagaaggctttaaaag-gacttggaaagcaataagcTTTTTTGTTC----TCA-TTTTTT------------------------AATAGGTTATCAGTGTTGTGAATGGATTATGAAAAATGACTTTGGGCTCAGTGAGTAACGGAAATGTTGATGCTTAATAGTGTGCTtaa-----tattaatataatagtaataaacgttg----tt-----attgttgag--taatagttatTTT-------------GCTTTTC-CTGCTTTTCTTT--TCC---------------------AGTGTTTTAG--------TCAGAGACTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163613 271 - 192460366 atagattcattataaggattatatgaaatgacacatgagaaggctttaaaag-gacttggaaagcaataagcTTTTTTGTTC----TCA-TTTTTT------------------------AATAGGTTATCAGTGTTGTGAATGGATTATGAAAAATGACTTTGGGCTCAGTGAGTAACTGAAATGTTGATGCTTAATAGTGTGCTTAA-----TATTAACATAATAGTAGTAAACGTTG----TT-----ATTGTTGAG--TAATAGTTATTTT-------------GCTTTTC-CTGCTTTTCTTT--TCC---------------------AGTGTTTTAG--------TCAGAGACTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183112 271 -  11645122 atagattcattataaggattatatgaaatgacacatgagaaggctttaaaag-gacttggaaagcaataagcTTTTTTGTTC----TCA-TTTTTT------------------------AATAGGTTATCAGTGTTGTGAATGGATTATGAAAAATGACTTTGGGCTCAGTGAGTAACTGAAATGTTGATGCTTAATAGTGTGCTTAA-----TATTAACATAATAGTAATAAATGTTG----TT-----ATTGTTGAG--TAATAGTTATTTT-------------GCTTTCC-CTGCTTTTCTTT--TCC---------------------AGTGTTTTAG--------TCAGAGACTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168311 276 -   6739814 gtagattcattataaggattatatgaaatgacacatgagaaggctttaaaag-gacttggaaagcaataagcTTTTTTGTTCTCAATCA-TTTTTT------------------------AATAGGTTATCAGTGTTGTGAATGGATTATGAAAAATGACTTTGGGCTCAGTGAGTAACTGAAATGTTGATGCTTAATAGTGTGCTtaa-----tattaatataatagtaataaatgttg----tt-----attgttgag--taatagttatTTT-------------GCTTTTCACTGCTTTTCTTT--TCC---------------------AGTGTTTTAG--------TCAGAGACTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58186 269 - 101219884 atggattcattataaggattatatgaaatgacacatgagaaggctttaaaag-gacttggaaagcaataagcTTT----TTCTCAATCA-TTTTTT------------------------AACAGGTTATCAGTATTGTGAATGGATTATGAAAAATGACTTCGGGCTCAGTGAGTAACTGAACTGTTGATGCTTAATAGTGTGCTtaa-----tattaatataatagtaataaa---tg----tt-----attgttgag--taatagttatTTT-------------GCTTTTCACTGCTTTTCTTT--TCC---------------------AGTGTTTTAG--------TCAGAGACAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180494 276 -    785044 atagattcattataaggattatatgaaatgacacatgagaaggctttaaaag-gacttggaaagcaataagcTTTTTTGTTCTCAATCA-TTTTTT------------------------AATAGGTTATCAGTGTTGTGAATGGATTATGAAAAATGACTTTGGGCTCAGTGAGTAACTGAAATGTTGATGCTTAATAGTGTGCTtaa-----tattaatataatagtaataaatgttg----tt-----attgttgag--taatagttatTTT-------------GCTTTTCACTGCTTTTCTTT--TCC---------------------AGTGTTTTAG--------TCAGAGACTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69556 275 -  10971483 atagattcattataaggattatatgaaatgacacatgagaaggcttt-aaag-gacttggaaagcaataagcTATTTTGTTCTCAATCA-TTTTTT------------------------AATAAGTTATCAGTGTTGTGAATGGATTATGAAAAACGACTTTGGGCTCAGTGAGTAACTGAAATGTTGATGCTTAATAGTGTGCTtaa-----tattaatataataataataaATGTTG----TT-----ATTGTTGAG--TAATAGTTATTTT-------------GCTTTTCACTGCTTTTCTTT--TCC---------------------AGTATTTTAG--------TCAGAGACTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927411 282 -  13128814 atagatccagtataaggattatatgaaatgacacatgagaaggctttaaaagaaacttggaaagcaataagcTTTTATATTCTTAATCATTTTTTC------------------------AATAGGTTATCAGTGTTGTAAATGGTTTATGCAAATTAAGTCTGGGCTCAGTAAGTAACTGAAATGTAGACGCTTAATAGTGTGtttaatacattattaatataatattaataGATGTTG----CT-----ATTGTTGGG--TAATAGTTA-TTT-------------GCTTTTCAGTGCTTTTCTTT--TCC---------------------AGTGTTTTAG--------TCAGAGACTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7655989 281 +  14377064 atagatccagcataaggattatatgaaatgacacatgagaaggctttaaaagaaacttggaaagcaataagcTTTTATATTCTTAATCA-TTTTTC------------------------AATAGGTTATCAGTGTTGTAAATGGTTTATGCAAATTAAATCTGGGCTCAGTAAGTAACTGAAATGTTGATGCTTAATAGTGTGTTTAATACATTATTAATATAATATTAATAGATGTTG----TT-----ATTGTTGGG--TAATAGTTA-TTT-------------GCTTTTCAGTGCTTTTCTTT--TCC---------------------AGTGTTTTAG--------TCAGAGACTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124379 278 -   9889416 atagatccagcataaggattatatgaaatgatacatgagaaggctttaaaagaaacttggaaagcaataagcttttataatcttaatca-tttttC------------------------AATAGGTTATCAGTGTCATAAATGGTTTATGCAAATTAAGTTTGAGCTC----AGTAACTGAAATGTTGATGCTTAATAGTGTGTTTAATACATTATTAATATAATATTAATAGATGTTG----TT-----ATTGTTGGG--TAATAGTTATTTT-------------GCTTTTCAGTGATTTTCTTT--TCC---------------------AGTGTTTTAG--------TCAGAGACTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30868446 281 -  47401472 atagattcattgtaagaattgtgtgaaatgacctatataaaggctttaggaG-GA-CTGAAAAACAA---GCTCTTATTTTCTCAATAA-TTTATC------------------------AATAGTTTATCAATGTTGTGCATAGTTGATGTTAAGTGAGTTTTGGGTCAATGAATAACTGAAATGTTAATGCTTAATAGTACATTTAATATATTATTAATGTAATATTAACAAATGCAGTTATTT-----ATTGTTGTC--TAATACTCATTTT-------------GCTTTTTAGTGTTTTTCTTT--TCT---------------------AGTTTTTTAG--------ACAAAGACTT
i micMur3.chr31                I 59 C 0
s otoGar3.GL873528              20750692 306 +  38779656 -aagagtcaccataagaattgcatgaaacagtgtatgaaaaggctttagaag-gacctggaaaacaat--aCTTTTATTTTCTTAATTA-TTTACC------------------------AATAGTTTATCAATATTGTACATAGGAGA---TAAGTGAGTTTTAAGTCAGTGAATAACTGAAATATTAATGCTCAGTAGTGTATGTGATA---TATTAACATAATATT----GATGTAGTAATTT-----ATTATTGGA--TAATATTCATTTTTCTGTTGTTGTGGGttttttttttttttttttt--ttttnnnnnnnnnnnnnnnnnnnntgttttttGG--------CCAAAGAGCT
i otoGar3.GL873528             I 1 C 0
s mm10.chr16                    22699442 262 -  98207768 ATACATTTCTTATAATGAGTATGATAAAATACCTA--------CTGTAAAAG---CTTAAAAGGCAA-----------ATCCTAAATTA-TTATTCAAAAGACTAATCAAGGATGTCAATAATAGTTTATCAGTGTTGTACATGGTTGATGTTAAATGAATTTGACCTA-------AACTGG-------------AATAGAGTTTTTGA-----TATATTAATAGTGTTAATAATTGCAG----CC-----ATTTATGTATCTAATTTTCAGCTT-------------TCTCTTATTTTCTTTTTCTTTATTT---------------------ATTTTATTTG--------CCAGAGATA-
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28788505 258 -  39895921 ataaatttattataaggattgcataaaatcacacatgtaaaggctttagaag-gaattagaagatggtaagctcttaT------------TTTCTC------------------------AATAGTATATCAATGTCATATACAGTTGATGTTAAGTGAGTTTTGGCTCAATAAATGAAT-AAATGTTAATGGTTAACAGTAT--TCAATGTATTATTAATATAACATTAATAAATGTAG----TT-----AT-------------------TTC-------------ACTATTGACTGATATTCATT--CTT---------------------AGTGTTTTTGGTCTTTGTCCAGAGACTT
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6686530 263 +   6883506 acagatttattg-aaggattgcatgaaataacacatgtaaaggccttagagg-tacctggaatatgatgagcTATTAT------------TTTATC------------------------AATAGTATATCAACATTGTGCATGGCTGATGTTAAATGAAATTTGGCTCAATGAATAACTGAAATGTCAATGCTTAATAGTGGTCAACA-----TATTAATAT-----TAATAGATGTAG----TTCTTTAATTGTTGGC--CAGCATTCATTTT-------------GCTTTTAAGTTTTTTTCTTT--TTC---------------------AAT-TTTTAG--------TCAGAGCCTT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           78806 285 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=170499.000000
s hg38.chr14_GL000009v2_random    172244 13 +    201709 CTTAAGTCTCCTC
s panTro5.chr9                  41862299 13 + 116767853 CTTAAGTCTCCTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829845 13 + 205426864 CTTAAGCCTCCTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239301 13 +    245036 CTTAAGCCTCCTC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109035 13 -  86207423 CTTAAGCCTCCTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264677 13 - 204787373 CTTAAGTCTCCTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163884 13 - 192460366 CTTAAGTCTCCTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183383 13 -  11645122 CTTAAGTCTCCTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168587 13 -   6739814 CTTAAGTCTCCTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58455 13 - 101219884 CTTAAGTCTCCTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180770 13 -    785044 CTTAAGTCTCCTC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69831 13 -  10971483 CTTAAGTCTCTTC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927693 13 -  13128814 CTTAAGCTTCCTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656270 13 +  14377064 CTTAAGCTTCCTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124657 13 -   9889416 CTTAAGCTTCCTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30868727 13 -  47401472 TTTAAGTCTTCTA
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           79091 13 +   1229009 TTTAAGTCTTCTA
i eulFla1.LGHW01000695v1       I 285 I 187
s otoGar3.GL873528              20750998 12 +  38779656 TTTAAGCCTTCT-
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22699704 13 -  98207768 GTAAAGCCTTTTC
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28788764 13 -  39895921 TTAAAATCTTTTC
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6686793 12 +   6883506 -TTAAGCCTCTTC
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=25044.000000
s hg38.chr14_GL000009v2_random    172257 5 +    201709 AAGTG
s panTro5.chr9                  41862312 5 + 116767853 AAGTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829858 5 + 205426864 AAGTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239314 5 +    245036 AAGTG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109048 5 -  86207423 GAGAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264690 5 - 204787373 AAGAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163897 5 - 192460366 AAGAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183396 5 -  11645122 AAGAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168600 5 -   6739814 AAGAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58468 5 - 101219884 AAGAA
i chlSab2.chr22                C 0 I 164
s manLeu1.NW_012099043v1          180783 5 -    785044 AAGAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69844 5 -  10971483 AAGAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927706 5 -  13128814 AAGAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656283 5 +  14377064 AAGAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124670 5 -   9889416 AAGAG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30868740 1 -  47401472 --G--
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20751010 2 +  38779656 -AG--
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22699717 5 -  98207768 AATAA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28788777 5 -  39895921 AAGAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6686805 5 +   6883506 AATGG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           79104 187 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=273292.000000
s hg38.chr14_GL000009v2_random    172262 22 +    201709 TGTACACA--------TTTCTTAAATTTGT
s panTro5.chr9                  41862317 22 + 116767853 TGTACACA--------TTTCTTAAATTTGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829863 22 + 205426864 TGTACACA--------TTTCTTAAATTTGT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239319 22 +    245036 TGTACACA--------TTTCTTAAATTTGT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109053 22 -  86207423 TGTACACA--------TTTCTTAAATTTGT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264695 22 - 204787373 TGTACACA--------TTTCTTAAATTTGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163902 22 - 192460366 TGTACACA--------TTTCTTAAATTTGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183401 22 -  11645122 TGTACACA--------TTTCTTAAATTTGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168605 22 -   6739814 TGTACACA--------TTTCTTAAATTTGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58637 22 - 101219884 TGTACACA--------TTTCTTAAATTTGT
i chlSab2.chr22                I 164 C 0
s manLeu1.NW_012099043v1          180788 22 -    785044 TGTACACA--------TTTCTTAAATTTGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69849 22 -  10971483 TGTACACA--------TTTCTTGAATTTGT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927711 22 -  13128814 TGTACACA--------TTTCTTAAATTTGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656288 22 +  14377064 TGTACACA--------TTTCTTAAATTTGG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124675 22 -   9889416 TGTACACA--------TTTCTTAAATTTGG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30868741 22 -  47401472 TGTACACA--------TTTATTAAATTTGG
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20751012 21 +  38779656 TATATACG--------TTC-TCAAATTTGG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22699722 30 -  98207768 TATATACATATAATATTTTCTTAAGTGTAT
i mm10.chr16                   C 0 I 278
s canFam3.chr31                 28788782 21 -  39895921 TGTATACA--------TTTCTCAAGTTGA-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6686810 22 +   6883506 TTTTTGAA--------ATTCTTATATTTGG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           79104 187 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=137027.000000
s hg38.chr14_GL000009v2_random    172284 15 +    201709 TGGAAAGTACCTAAT
s panTro5.chr9                  41862339 15 + 116767853 TGGAAAGTACCAAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829885 15 + 205426864 TGAAAAGTACCAAAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239341 15 +    245036 TGGAAAGTACCAAAT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109075 15 -  86207423 TGTAAAGTACCAAAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264717 15 - 204787373 TGGAAAGTACCAAAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163924 15 - 192460366 TGGAAAGTACCAAAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183423 15 -  11645122 TGGAAAGTACCAAAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168627 15 -   6739814 TGGAAAGTACCAAAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58659 15 - 101219884 TGGAAAGTACCAAAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180810 15 -    785044 TGGAAAGTACCAAAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69871 15 -  10971483 TGGAAAGTACCAAAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927733 15 -  13128814 TGGGAAGTACCAAAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656310 15 +  14377064 TGGGAAGTACCAAAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124697 15 -   9889416 TGGAAAGTACCAAAT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30868763 15 -  47401472 TAGAAAGATTCTTAT
i micMur3.chr31                C 0 I 77
s otoGar3.GL873528              20751033 14 +  38779656 TGGAAGGATCCTTA-
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28788803 15 -  39895921 TGGAAGGATTTTTAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6686832 12 +   6883506 TAGAAAGATTAT---
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22699752 278 -  98207768 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           79104 187 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=756406.000000
s hg38.chr14_GL000009v2_random    172299 79 +    201709 TTAAGATATC-----TTGCATTTTTTTCTTCCTTAGTAAACACTAAATTCCATCACGCAGCAGAAAAAGGGCTCTGTTATTGTC
s panTro5.chr9                  41862354 79 + 116767853 TTAAGATATC-----TTGCATTTTTTTCTTCCTTAGTAAACATTAAATTCCATCACGCAGCAGAAAAAGGGCTCTGTCATTGTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829900 79 + 205426864 TTAAGATATC-----TTGCATTTTTCTCTTCCTTAGTAAACACTAAATTCCATCACGCAGCAGAAAAAGGGCTCTGTTATTGTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239356 79 +    245036 TTAAGATATC-----TTGCATTTTTCTCTTCCTTAGTAAACACTAAATTCCATCACGCAGCAGAAAAAGGGCTCTGTTATTGTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109090 79 -  86207423 TTAAGATATC-----TTGTATTTTTTTCTTCCTTAGTAAACACTAAATTCTATCACGCAGCAGAAAAAGGGCTCTGTTATTGTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264732 78 - 204787373 TTAAGATCTC-----TTGCA-TTTTTTCTTCCTTAGTAAACGCTATATTCCATCGTGCAGCAGAAAAAGGGTTCTGTTATTGTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    163939 78 - 192460366 TTAAGATCTC-----TTGCA-TTTTTTCTTCCTTAGTAAACGCTATATTCCATCGTGCAGCAGAAAAAGGGTTCTGTTATTGTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183438 78 -  11645122 TTAAGATCTC-----TTGCA-TTTTTTCTTCCTTAGTAAACGCTATATTCCATCGTGCAGCAGAAAAAGGGTTCTGTTATTGTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168642 78 -   6739814 TTAAGATATC-----TTGCA-TTTTTTCTTCCTTAGTAAACGCTATATTCCATCGTGCAGCAGAAAAAGCGTTCTGTTATTGTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58674 78 - 101219884 TTAAGGTATC-----TTGCA-TTTTTTCTTCCTTAGTAAATGCTATATTCCATCGTGCAGCAGAAAAAGGGTTCTGTTATTGTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180825 78 -    785044 TTAAGATATC-----TTGCA-TTTTTTCTTCCTTAGTAAACGCTATATTCCATCGTGCAGCAGAAAAAGGGTTCTGTTATTGTC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69886 77 -  10971483 TTAAGATATC-----TTGCA--TTTTTCTTCCTTAGTAAATGCTATATTCCATCGTGCAGCAGGAAAAGGGTTCTGTTATTGTC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927748 78 -  13128814 TTAAGATACC-----TTACA-TTTTTCCTTCCTTAGTAAACACTAAATTCCATCATGCAGCAGAAAAAGGGCTCTGTTATTGTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656325 79 +  14377064 TTAAGATACC-----TTACATTTTTTCCTTCCTTAGTAAACACTAAATTGCGTCATGCAGCAGAAAAAGGGCTCTGTTATTGTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124712 79 -   9889416 TTAAGATACT-----TTGCATTTTTTCCTTCCTTAGTAAACACTAAATTCCATCATGCAGCAGAAAAAGGTCTCTGTTATTCTT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20751047 77 +  38779656 --GAGGCATCCTTTGCTGTA-GTTTGCTTTTCTTATCTTACATTAAATTCTGTCATGCAGGAGAAAAGATATTTATTTGG----
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28788818 75 -  39895921 ---AGGCATT-----TTATG-TTATGCTTTCCTTAGCAAATGCTAAATTTCATCATGCAGAAGAATGAGATTTTTGTTTTTGCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6686844 78 +   6883506 TAAAGGCATC-----TTATA-TTATGATTTCTTTAGTAAATACTAAATTACACCATATAGGACAATGAGGGTTTTGTTGTTGTT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22699752 278 -  98207768 I
e micMur3.chr31                 30868778 77 -  47401472 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           79104 187 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=954742.000000
s hg38.chr14_GL000009v2_random    172378 75 +    201709 GGTACAATGGTTTAATATTCACTTTTATTCCCTATATCATAGTTCTCATTTAATTGCTATTTAGAATAAAACTTG
s panTro5.chr9                  41862433 75 + 116767853 GGTACAATGGTTTAATATTCACTTTTATTCCCTGTATCGTAGTTCTGATTTAATTGCCATTTAGAATAAAACTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77829979 75 + 205426864 GGTACAATGGTTTAATATTCACTTTTATTCCCTGTGTGGTAGTTCTGATTTAATTGCTATTTAGAATAAAACTTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239435 75 +    245036 GGTACAATGGTTTAATATTCACTTTTATTCCCTGTGTGGTAGTTCTGATTTAATTGCTATTTAGAATAAAACTTG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109169 75 -  86207423 GGTACAATAGTTTAATATTCACTTTTATTCCCTGTATGGTAGTTCTGATTTAATTGCTATTTAGAATAAAACTTG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264810 75 - 204787373 AGTACCATGGTTTAATATTCACTTTTATTCCCTGTATGGTGGTTCTGATTTAATTGCTATTTAGAATAAAACCTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164017 75 - 192460366 AGTACCATGGTTTAATATTCACTTTTATTCCCTGTATGGTGGTTCTGATTTAATTGCTATTTAGAATAAAACCTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183516 75 -  11645122 AGTACCATGGTTTAATATTCACTTTTATTCCCTGTATGGTGGTTCTGATTTAATTGCTATTTAGAATAAAACCTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168720 75 -   6739814 AGTACCATGGTTTAATATTCACTTTTATTCCCTGTATGGTGGTTCTGATTTAATTGCTATTTAGAATAAAACCTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58752 75 - 101219884 AGTACTATGGGTTAATATTCACTTTTATTCCCTGTATGGTGGTTCTGATTTAATTGCTATTTAGAATAAAACCTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180903 75 -    785044 AGTACCATGGTTTCATATTCACTTTTATTCCCTGTATGGTGGTTCTGATTTAATTGCTATTTAGAATAAAACCTG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           69963 75 -  10971483 AGTACCATGGTTTAATATTCACTTTTATTCCCTGTATGGTGGTTCTGATTTAATTGCTATTTAGAATAAAACCTG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927826 75 -  13128814 GGTACAATGGTTTAATATTCACTTTTATTCCCTGTGTGGTGGTTCTGATTTAATTGCTGTTTAGAACAAAACTTG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656404 75 +  14377064 GGAACAATGGTTTAATATTCGCTTTTATTCCCTGTGTGGTGGTTCTGATTTAATTGCTGTTTAGAATAAAACTTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124791 75 -   9889416 GGTACAATGGTTTAATATTCACTTTTATTCCCTGTGTGGTGGTTCTGATTTAATTGCTGTTTAGAATAAAACTTG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30868855 75 -  47401472 AGTATAATTGTTTAATATTTGCTTTTGTTTCCTGTATAGTGGTTCTTATTTAATTGGTACTTAGAATAAAACTTG
i micMur3.chr31                I 77 C 0
s otoGar3.GL873528              20751124 75 +  38779656 GGCACAATGGTTTAATATTAACTTTTATTCCCCACGTCAAAGTTCTGATTTAATTTGTGTTTAGCATAAAGCTCA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28788893 74 -  39895921 GGTAT-ATGGTTTAATATGTCCTTGTATTCCTTGTGTGGTGGTTTTGATTTAATTGGTGTTAAGAATAAAGTTCA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6686922 75 +   6883506 GGTACCATCATTTAATACTCACTTTTATTCCCTGTGCAGTGGCTCTGGTTTAACTGGTGTTTAGAATAAAGCTAA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22699752 278 -  98207768 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           79104 187 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=24756.000000
s hg38.chr14_GL000009v2_random    172453  7 +    201709 TTCC-----------TTA
s panTro5.chr9                  41862508  7 + 116767853 TTCC-----------TTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830054 18 + 205426864 TTCTTATTGCTTTCataa
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239510 18 +    245036 TTCTTATTGCTTTCataa
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109244  4 -  86207423 TTCC--------------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264885  7 - 204787373 TTCC-----------TTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164092  7 - 192460366 TTCC-----------TTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183591  7 -  11645122 TTCC-----------TTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168795  7 -   6739814 TTCC-----------TTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58827  7 - 101219884 TTCC-----------TTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180978  7 -    785044 TTCC-----------TTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70038  7 -  10971483 TTCC-----------TTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927901  7 -  13128814 CTGC-----------TTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656479  7 +  14377064 TTAC-----------TTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124866  7 -   9889416 CTAC-----------TTA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30868930  7 -  47401472 GCAC-----------TTA
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           79291  7 +   1229009 GCAC-----------TTA
i eulFla1.LGHW01000695v1       I 187 I 296
s otoGar3.GL873528              20751199  7 +  38779656 GCAC-----------TCA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28788967  7 -  39895921 CTAT-----------TTA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6686997  7 +   6883506 CTAC-----------TTA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22699752 278 -  98207768 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=1583449.000000
s hg38.chr14_GL000009v2_random    172460 140 +    201709 TTATA-------------TGCATTCATAATTATAAAATTTGTGTTTTAATGCCTTCTACAAATATACTGTGCTTTTCTTTATTTCCTTATATCTTTTACTGTTGCATGATCCTGGTATTTGAAATCTCATTAAGTGTTGTTTGGGG-ATTTGCT
s panTro5.chr9                  41862515 139 + 116767853 TTATA-------------TG-ATTCATAATTAAAAAATTTGTGTTTTAATGCCTTCTACACATATACTGTGCTTTTCTTTATTTCCTTATATCTTTTACTGTTTCATGATCCTGGTATTTGAAATCTCATTAAGTGTTGTTTGGGG-ATTTGCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830072 153 + 205426864 ttataaaatagttataattgctttcataattataaAATTTGTGTTTTAATGCCTTCTACACATATACTGTGCTTTTCTTTATTTCCTTATATCTTTTACTGTTTCATAATCCTGGTATTTGAAATCTCATTAAGTGTTATTTGGGG-ATTTGCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239528 153 +    245036 ttataaaatagttataattgctttcataattataaAATTTGTGTTTTAATGCCTTCTACACATATACTGTGCTTTTCTTTATTTCCTTATATCTTTTACTGTTTCATAATCCTGGTATTTGAAATCTCATTAAGTGTTATTTGGGG-ATTTGCT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109248 140 -  86207423 TTATA-------------TGCTTTCATAATTATAAAATTTATGTTTTAATGCCTTCTACACATATACTGTGCTTTTCTTTATTTCTTTATATCTCTCACTGTTTCATAATCCTGGTATTTGAAATCTCATTAAGTGTTATTTGGGG-ATTTGCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204264892 141 - 204787373 TTATG-------------TGCTTTTGTAATTACAAAATTTGTGTCTTAATGCCTTCTACACATATACTGTGCTTTTGTTTATTTCCTTTTATCTTTTACTGTTTCATAATCCTGGTATTTGAAATCTCGTTAAGTGTTATTTGGGGAATTTGCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164099 141 - 192460366 TTATG-------------TGCTTTTGTAATTACAAAATTTGTGTCTTAATGCCTTCTACACATATACTGTGCTTTTCTTTATTTCCTTTTATCTTTTACTGTTTCATAATCCTGGTATTTGAAATCTCGTTAAGTGTTATTTGGGGAATTTGCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183598 141 -  11645122 TTATG-------------TGCTTTTGTAATTACAAAATTTGTGTCTTAATGCCTTCTACACATATACTGTGCTTTTCTTTATTTCCTTTTATCTTTTACTGTTTCATAATCCTGGTATTTGAAATCTCGTTAAGTGTTATTTGGGGAATTTGCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168802 141 -   6739814 TTATA-------------TGCTTTCGTAATTACAAAATTTGTGTCTTAATGCCTTCTACACATATACTGTGCTTTTCTTTATTTCCTTTTATCTTTTACTGTTTCATAATCCTGGTATTTGAAATCTCATTAAGTGTTATTTGGGGAATTTGCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58834 141 - 101219884 TTATA-------------TGCTTTCATAATTACAAAATTTGTGTCTTAATGCCTTCTACACATATACTGTGCTTTTCTTTATTTCCTTTTATCTTTTACTGTTTCATAATCCTAGTATTTGAAATCTCATTAAGTGTTATTTGGGGAATTTACT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          180985 141 -    785044 TTATA-------------TGCTTTCGTAATTACAAAATTTGTGTCTTAATGCCTTCTACACATATACTGTGCTTTTCTTTATTTCCTTTTATCTTTTACTGTTTCACAATCCTGGTATTTGAAATCTCATTAAGTGTTATTTGGGGAATTTGCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70045 141 -  10971483 TTATA-------------TGCTTTCATAATTACAAAATGTGTGTCCTAATGCCTTCTACACATATACTGTGCTTTTCTTTATTTCCTTTTATCTTTTACTGTTTCATAATCCTGGTATTTGAAATCTCATTAAGCATTATTTGGGGAATTTGCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10927908 139 -  13128814 TTGAA-------------TGCTGTCATAATTACAAAATTTGGGTTTTAATGCCTTCTACACCTATACTGTGG-TTTCTTTATTTCCTTATATCTTTTACTGTTTTATAATAATGACATTTGAAATCTCTTTAAATGTTATTTGGAG-ATTTGCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656486 139 +  14377064 TTGAA-------------TGCTTTCATAATTACAAAATTTGGGTTTTAATGCCTTCTACACATATACTGTGC-TTTCTTTATTTCCTTATATCTTTTACTGTTTTATAATAATGACATTTGAAATCTCATTAAATGTTATTTGGAG-ATTTGCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4124873 139 -   9889416 TTATA-------------TGCTTTCATAATTACAAAATTTGAGTTTTAATGCCTTCTACACATATACTGTGC-TTTCTTTATTTCCTTATATCTTTTACTGTTTTATAATAACGACATTTGAAATCTCATTAAATGTTATTTCGAG-ATTTGCT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30868937 137 -  47401472 TTATA-------------TGCTTTTGTAATTTTGAAATTT--GTTTTAATGTCTTCTATATATATACTGTGTTTTTCTTTATTTCTTTACATCTTTTGTTGTTTCATAATCATGGAAATTGAAATCTCATAAATTGTTTTGGGGGG--CTTGCT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20751206 125 +  38779656 TTATC-------------TATTTCCATAGTTGCAGAATTT--GTTTGAACGCCT------TATATACTGTGTTTTTCTTTATTTCTTTACATC-----TTATTTCTTAATCATGGCATTTGAAAT-TCATAAAAAGTCTTTTGAGG--CTTGCT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28788974 139 -  39895921 TTATA-------------GGTTTTCACAATTA-AGAATTTGTGTTTTAATATATTCTATACATATACTGTGCTTTTCTTTATTTTCTTAAGTCTTTTACTGTTTCATAATCATGGCATTTGAAATCTCGTAAGATGTTATTTGGGG-GCTTGCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6687004 132 +   6883506 TTATA-------------TGCCTTTATGATAATAAA--------TTTAGTGTTATCTACATATATACTGTGCTTTTCTTTGCTTTCTCAAATTATTTGTTGCTTTATAATCATGGTATTTGAAATCTTATACAATGTTATTTAGAA-CTTTtct
i dasNov3.JH568778             C 0 I 98
e mm10.chr16                    22699752 278 -  98207768 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           79298 296 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=1031287.000000
s hg38.chr14_GL000009v2_random    172600 84 +    201709 GGGAATGTCATCTACATAGTAATGTCTCAAGTTTGTAACATCTTTAAAACATAATAGGAGATGGAATTCACAGCAGAGTAATAA
s panTro5.chr9                  41862654 84 + 116767853 GGGAATGTCATCTACGTAGTAATGTCTCAAGTTTGTAGCATCTTTAAAACATAATAGGAGATGGAATTCACAGCAGAGTAATAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830225 84 + 205426864 GGGAATGTCATCTACATAGTAATGTCTCAAGTTTGTagcatctttaaaacataataggagatggaattcacagcagagtaataa
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239681 84 +    245036 GGGAATGTCATCTACATAGTAATGTCTCAAGTTTGTagcatctttaaaacataataggagatggaattcacagcagagtaataa
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109388 84 -  86207423 GGGAATGTCATCTACATAGTCATGTCTCAAGTTTGTAGCATCTTTAAAACATAATAGGAGATGGAATTCACAGCAGAGGAATAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265033 84 - 204787373 GGGAATGCCATCTACATAGTAATGTCTCAAGTTTGTAGCATCTTTAAGACACAATAGGAGATGGAATTCACAGCAGAGTAATAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164240 84 - 192460366 GGGAATGCCATCTACATAGTAATGTCTCAAGTTTGTAGCATCTTTAAGACACAATAGGAGATGGAATTCACAGCAGAGTAATAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183739 84 -  11645122 GGGAATGCCATCTACATAGTAATGTCTCAAGTTTGTAGCATCTTTAAGACACAATAGGAGATGGAATTCACAGCAGAGTAATAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          168943 84 -   6739814 GGGAATGTCATCTACATAGTAATGTCTCAAGTTTGTAGCGTCTTTAAGACACAATAGGAGATGGAATTCACAGCAGAGTAATAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    58975 84 - 101219884 GGGAATGTCATCTACATAGTAATGTCTCAAGTTTGTAGCATCTTTAAGACACAATAGGAGATGGAATTCACACCAGAGTAATAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181126 84 -    785044 GGGAATGTCATCTACATAGTAATGTCTCAAGTTTGTAGCATCTTTAAGACACAATAGGAGATGGAATTCACAGCAGAGTAATAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70186 84 -  10971483 GGGAATGTCATCTACATAGTAATGTCTCGAGTTTGTAGCATCTTTAAGACACAATAGGAGATGGAATTCACAGCAGAGTAAAAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928047 84 -  13128814 GGGAATGTCATCTACATAGTAATGTCTCAAGTTTGTAGCATCTTTAAAACATAATACGAGATGGAATTCGTAACAGAGTAATCA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656625 84 +  14377064 GAGAATGTCATCTACATAGTAATGTCTCAAGTTTGTAGCATCTTTAAAACATAATACGAGATGGAATTCATAACAGAGTAATCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125012 84 -   9889416 GGGAATGTCATCTACATAGTAATGTCTCAAGTTTTTAGCATCTTTAAAACATAATACGAGATAGAATTCGTAACAGAGTAATCA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30869074 84 -  47401472 GGGAATGTCATCTAGATAGTAATGTCTCAAGTTCGTAGCATCTTTAAGGCATGATAGGAGATGGAATTCACAGCACAGTAGTAA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20751331 84 +  38779656 TGGAATATCTTCTAGATTATAACGCCTTAAGTTTGTAGCATCTTTAAGACATGATGGGAGATGGAATCCCTAGCTGAGTAAGAA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28789113 84 -  39895921 GGAAATGTCATTTACATAGTAATGGCTCAAGTTTGTAGTATCTTTAAAGCATAAAAGGAGATGGACTTCGTAGAAGAGGAATAA
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22699752 278 -  98207768 I
e nasLar1.chrUn_JMHX01037930v1       103 181 +       836 I
e eulFla1.LGHW01000695v1           79298 296 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I
e dasNov3.JH568778               6687136 98 +   6883506 I

a score=29737.000000
s hg38.chr14_GL000009v2_random    172684 2 +    201709 GC
s panTro5.chr9                  41862738 2 + 116767853 GC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830309 2 + 205426864 gc
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239765 2 +    245036 gc
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109472 2 -  86207423 GC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265117 2 - 204787373 GC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164324 2 - 192460366 GC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183823 2 -  11645122 GC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169027 2 -   6739814 GC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59059 2 - 101219884 AC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181210 2 -    785044 GC
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chrUn_JMHX01039492v1      1315 2 +      1317 GC
i nasLar1.chrUn_JMHX01039492v1 n 181 n 181
s colAng1.NW_012123820v1           70270 2 -  10971483 GC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928131 2 -  13128814 GC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656709 2 +  14377064 GC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125096 2 -   9889416 GC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30869158 2 -  47401472 GC
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20751415 2 +  38779656 GC
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28789197 2 -  39895921 AC
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22699752 278 -  98207768 I
e eulFla1.LGHW01000695v1           79298 296 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I
e dasNov3.JH568778               6687136 98 +   6883506 I

a score=876782.000000
s hg38.chr14_GL000009v2_random    172686 74 +    201709 CTCCCACTTTAGGCAATATATTTGTGATTGACATGACTTTGTTCCCAGAGGGCAGTTAGCAACACAATATTATG
s panTro5.chr9                  41862740 74 + 116767853 CTCCCGCTTTAGGCAATGTATTTGTGATTGGTATGACTTTATTCCCAGAGGGCAGTTAGCAACACAATATTAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830311 73 + 205426864 ctcctgctttagacaatgtATTTGTGATTGGTATGACTTTGTTCCCAGA-GGCAGTTAGCAACACAATATTATG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239767 74 +    245036 ctcctgctttagacaatgtATTTGTGATTGGTATGACTTTGTTCCCAGAGGGCAGTTAGCAACACAATATTATG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109474 74 -  86207423 CTCCCGCTTTAGGCAATGTATTTGTGATTGGTATGACTTCGTTCCCAGAGGGCAGTCAGCAGCACAATATTATG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265119 74 - 204787373 CTCCCCCTTTAGGCAATGTATTTGTGATTGGTATGACTTTGTTCCCAGAGGGCAGTTAGCAACACAATATTATG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164326 74 - 192460366 CTCCCCCTTTAGGCAATGTATTTGTGATTGGTATGACTTTGTTCCCAGAGGGCAGTTAGCAACACAATATTATG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183825 74 -  11645122 CTCCCCCTTTAGGCAATGTATTTGTGATTGGTATGACTTTGTTCCCAGAGGGCAGTTAGCAACACAATATTATG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169029 74 -   6739814 CTCCCCCTTTAGGCAATGTATTTGTGATTGGTATGACTTTGTTCCCAGAGGGCAGTTAGCAACACAATATTATG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59061 74 - 101219884 CTCCCCCTTTAGGCAATGTATTTGTGATTGGTATGACTTTGTTCCCAGAGGGCAGTTAGCAACACAATATTATG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181212 74 -    785044 CTCCCCCTTTAGGCAATGTATTTGTGATTGGTATGACTTTGTTCCCAGAGGGCAGTTAGCAACACAATATTATG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70272 74 -  10971483 CTCCCCCTTTAGGCAATGTATTTGTGATTGGTATGACTTTGTTCCCAGAGGGCAGTTAGCAACACAATATTATG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928133 70 -  13128814 CTCCCTCTTTAGGCA----ATTTGTGATTGGTATGACTTTGTTCCCAGAGGGCAGTTAGTAACACAAGATTATG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656711 74 +  14377064 CTCCCTCTTTAGGCAATGTATTTGTGATTGGAATGACTTTGTTCCCAGAGGGCAGTTAGTAACACAAGATTATG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125098 74 -   9889416 CTCCCTCCGTAGGCAATGTATTTGTGATTGGTATGACTTTGTTCCCAGAGGGCAGTTAGTAACACAAGATTATG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30869160 74 -  47401472 ATCTCACTTTAGGTTATATATTTATTATTGGTGTGACTTTGTTCCTAGAAGGCAGTTAGCAACACAGCATTATG
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20751417 74 +  38779656 ATCTCTCTTTAGGTTATGTTATGGTGCTTGGTATGACTTTGCTCCCAGAGGGCAGTTAGCAACACTCCATAATG
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28789199 74 -  39895921 ATTTCTTTTTGGGGTATGTATTTGTGATTGGTATGACTCTGCTCCCAGAGGGCAGTCAGCAACACAGAAATATG
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22699752 278 -  98207768 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79298 296 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I
e dasNov3.JH568778               6687136 98 +   6883506 I

a score=229449.000000
s hg38.chr14_GL000009v2_random    172760 19 +    201709 GCTATGTGTACAAGGAAAA---------------
s panTro5.chr9                  41862814 19 + 116767853 GCTATGTGTACAAGGAAAA---------------
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830384 19 + 205426864 GCTATGAGTACAAGGAAAA---------------
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239841 19 +    245036 GCTATGAGTACAAGGAAAA---------------
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109548 19 -  86207423 GCTATGTGTACAAGGAAAA---------------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265193 19 - 204787373 GCTATGTGTACAAGGAAAA---------------
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164400 19 - 192460366 GCTATGTGTACAAGGAAAA---------------
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183899 19 -  11645122 GCTATGTGTACAAGGAAAA---------------
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169103 19 -   6739814 GCTATGTGTACAAGGAAAA---------------
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59135 19 - 101219884 GCTATGTGTACAAGGAAAA---------------
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181286 19 -    785044 GCTATGTGTACAAGGAAAA---------------
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70346 19 -  10971483 GCTATGTGTACAAGGAAAA---------------
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928203 19 -  13128814 GTTATGTGTATAAGGAAAA---------------
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656785 19 +  14377064 GTTATGTGTATAAGGAAAA---------------
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125172 19 -   9889416 GTTATACGTATAAGGAAAA---------------
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30869234 19 -  47401472 GCTGTGTGTAGAAGGAAAA---------------
i micMur3.chr31                C 0 I 318
s eulFla1.LGHW01000695v1           79594 19 +   1229009 ATTGTGTGTAGAAGGAAAA---------------
i eulFla1.LGHW01000695v1       I 296 I 1093
s otoGar3.GL873528              20751491 19 +  38779656 GCTGTACATATAAGGAAAT---------------
i otoGar3.GL873528             C 0 I 1
s canFam3.chr31                 28789273 34 -  39895921 ACTGTGTGTGCAAGGATAAAAATAATAAGTGAAA
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22699752 278 -  98207768 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I
e dasNov3.JH568778               6687136 98 +   6883506 I

a score=25546.000000
s hg38.chr14_GL000009v2_random    172779  32 +    201709 CAAA---------------------------------------TTTTA-A-----------------AAATCT--------------------------CCTTT-----------------------------------------------------------------------AAAAA---------------AAAACA
s panTro5.chr9                  41862833  31 + 116767853 CAAA---------------------------------------TTTTA-A-----------------AAATCT--------------------------CCTTT-----------------------------------------------------------------------AAAAA---------------AAA-CA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830403  35 + 205426864 CAAACAAAT----------------------------------TCTTT-A-----------------AAATCT--------------------------CCTTT-----------------------------------------------------------------------AAAAA---------------AA--CA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239860  35 +    245036 CAAACAAAT----------------------------------TCTTA-A-----------------AAATCT--------------------------CCTTT-----------------------------------------------------------------------AAAAA---------------AA--CA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109567  36 -  86207423 CAAACAAAT----------------------------------TTTAA-A-----------------AAATCT--------------------------CCTTT-----------------------------------------------------------------------AAAAA---------------AAA-CA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265212  35 - 204787373 CAGACACA-----------------------------------TTTGT-T-----------------TAATCT--------------------------CCTTT-----------------------------------------------------------------------GAAAA---------------ACA-CA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164419  35 - 192460366 CAGACACA-----------------------------------TTTGT-T-----------------TAATCT--------------------------CCTTT-----------------------------------------------------------------------GAAAA---------------ACA-CA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183918  35 -  11645122 CAGACACA-----------------------------------TTTGT-T-----------------TAATCT--------------------------CCTTT-----------------------------------------------------------------------GAAAA---------------ACA-CA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169122  35 -   6739814 CAGACACA-----------------------------------TTTGT-T-----------------GAATCT--------------------------CCTTT-----------------------------------------------------------------------GAAAA---------------ACA-CA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59154  35 - 101219884 CAAACACA-----------------------------------TTTGT-T-----------------TAATCT--------------------------CCTTT-----------------------------------------------------------------------GAAAA---------------ACA-CA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181305  35 -    785044 CAGACACA-----------------------------------TTTGT-T-----------------TAATCT--------------------------CCTTT-----------------------------------------------------------------------GAAAA---------------ACA-CA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70365  35 -  10971483 CAAACACA-----------------------------------TTTGT-T-----------------TAATCT--------------------------CCTTT-----------------------------------------------------------------------GAAAA---------------ACA-CA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928222  32 -  13128814 CAAATAAT-----------------------------------TTTTT-A-----------------AAATCT--------------------------CCTTT--------------------------------------------------------------------------TA---------------AAA-TA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656804  38 +  14377064 CAAACAAT-----------------------------------TTTTTAA-----------------AAATCT--------------------------TCTTTT---------------------------------------------------------------------AAAATA---------------AAA-TA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125191  32 -   9889416 CAA----------------------------------------TTTTT-A-----------------AAATCT--------------------------CTTTTT---------------------------------------------------------------------AAAATA---------------AAA-TA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20751511 102 +  38779656 CAAGTGAATAAAAAAACCT---TTTAACACAGAA---------TTTTT-AGTGTGTGTCAAAATTTGAAATCT-------GTGAATGTTA-------GGCTTTT-----------------------------------------------------------------------GAACACAGTGGTAGCTTTACAAA-TA
i otoGar3.GL873528             I 1 C 0
s canFam3.chr31                 28789307 165 -  39895921 CAAACAAAGAATTCCTTTTGACTTCAACACAGAATTATTATTTTTGTC-A-----------------GAATCTAAAGTATGTGAATGCTAGACATGTGACCTCTTCATTTAGCTTCACAAGTGGCATAAATTGATAGGATTTTCAAAATATATCTAGGTGAATAATATGAATCCAGAAAA---------------ACA---
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22699752 278 -  98207768 I
e micMur3.chr31                 30869253 318 -  47401472 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I
e dasNov3.JH568778               6687136  98 +   6883506 I

a score=332259.000000
s hg38.chr14_GL000009v2_random    172811  42 +    201709 -----------------------GTT------------------------------------------------------------------------------------CCCAATCCTAACCAGT----ATCATGCACAGAATCCGT----------------TTCCA
s panTro5.chr9                  41862864  42 + 116767853 -----------------------GTT------------------------------------------------------------------------------------CCCGATCCTAACCAGT----ATCATGCACAGAATCCGT----------------TTCCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830438  42 + 205426864 -----------------------GTG------------------------------------------------------------------------------------CCCGAGCCTAACCAGT----ATCATGCATGGAATCCAT----------------TTCCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239895  42 +    245036 -----------------------GTG------------------------------------------------------------------------------------CCCGAGCCTAACCAGT----ATCATGCATGGAATCCAT----------------TTCCA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109603  42 -  86207423 -----------------------GTG------------------------------------------------------------------------------------CCCGAGCCTAACCAGT----GTCATGCACAGAATCCGT----------------TTCCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265247  42 - 204787373 -----------------------GTG------------------------------------------------------------------------------------CCCCAGCCTAACTAGT----ATCATGCACAGAATCCAT----------------TTCCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164454  42 - 192460366 -----------------------GTG------------------------------------------------------------------------------------CCCCAGCCTAACTAGT----ATCATGCACAGAATCCAT----------------TTCCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183953  42 -  11645122 -----------------------GTG------------------------------------------------------------------------------------CCCCAGCCTAACTAGT----ATCATGCACAGAATCCAT----------------TTCCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169157  42 -   6739814 -----------------------GTG------------------------------------------------------------------------------------CCCCAGCCTAACCAGT----ATTATGCACAGAATCCAT----------------TTCCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59189  42 - 101219884 -----------------------GCG------------------------------------------------------------------------------------CCCCAGCCTAAGCAGT----ATTATGCACAGAATCCAT----------------TTCCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181340  42 -    785044 -----------------------GTG------------------------------------------------------------------------------------CCCCAGCCTAACCAGT----ATTATGCACAGAATCCAT----------------TTCCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70400  42 -  10971483 -----------------------GTG------------------------------------------------------------------------------------CCCCAGCCTAACCAGT----ATCATGCACAGAATCCAT----------------TTCCA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928254  42 -  13128814 -----------------------GTG------------------------------------------------------------------------------------CCCCAGCCTGACCACT----ATCATGCACAGAATCTAT----------------TTCCA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656842  42 +  14377064 -----------------------GTG------------------------------------------------------------------------------------CCCCAGCCTGACCACT----ATCATGCACAGAATCTAT----------------TTCCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125223  42 -   9889416 -----------------------ATG------------------------------------------------------------------------------------CCCCAGCCTGACCACT----ATCATGCACAGAATCTAT----------------TTCCA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20751613 142 +  38779656 -----------------------GTGTAAGTAGATTGGATTTTTAGAGCATAGTTGGTTGAATAACTTGAATCCAAAAGATCACTGCTTGTGACAGACATTTAGAATGTATCCTAGCCTAATTAGT----ATTATGCACAAAATCCCTGTTGGGCTTGGGACCACTCCA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22700030  39 -  98207768 -----------------------GTG------------------------------------------------------------------------------------CCCAGGTCTTTCCAAC----ATCATTCAAAGAACCCTG----------------TT---
i mm10.chr16                   I 278 C 0
s canFam3.chr31                 28789472  83 -  39895921 TTGTTTAAACACACATTTAGAAAGTG------------------------------------------------------------------------------------CTCTGGT-TGAGCAGTATCAATCAAACAAAGAATCCTTGTTGGGTACAAGGCT-CTCTA
i canFam3.chr31                C 0 C 0
e micMur3.chr31                 30869253 318 -  47401472 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I
e dasNov3.JH568778               6687136  98 +   6883506 I

a score=1504796.000000
s hg38.chr14_GL000009v2_random    172853 140 +    201709 CCTCTTCATATGGAAGCAGCTCTGGGTGGATATCTAGAAAGTTGGATAACTATTTATCACATATGATCTGCAAAGGGAGAGA-TTTACAAGAAAGTGTTAAATTTAATCCATAGGAAAGCAAAAT-C-AAAAATCAATGAATT
s panTro5.chr9                  41862906 140 + 116767853 CCTCTTCATATGGAAGCAGCTCTGGGTGGACATCTAGAAAGTTGGATAACTATTTATCACATAAGATCTGTAAAGGGAGAGA-TTTACGAGAAAGTGTTAAATTTAATCCATAGGAAAGCAAAAT-C-AAAAATCAATGAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830480 140 + 205426864 CCTCTTCATATGGAAGCAGCTCTGGGTGGACATCTAGAAAGTTGGATAACTATTTATCACATATGGTCTGCAAAGGGAGAGG-TTTATAAGAAAGTGTTAAATTTAATCCATAGGAAAGCAAAAT-C-AAAAATCAATGAATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          239937 140 +    245036 CCTCTTCATATGGAAGCAGCTCTGGGTGGACATCTAGAAAGTTGGATAACTATTTATCACATATGGTCTGCAAAGGGAGAGA-TTTATAAGAAAGTGTTAAATTTAATCCATAGGAAAGCAAAAT-C-AAAAATCAATGAATT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109645 140 -  86207423 CCTCTTCATATGGAAGTAGCTCTGGGTGGACGTCTAGAAAGTTGGATAACTATTTATCACATATGATCTGCAAAGGAAGAGA-TTTATAAGAAAGTGTTAAATTTAATCCATAGGAAAGCAAAAT-C-AAAAATCAATGAATT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265289 140 - 204787373 CCTCTTCTTATGGAAGGAGCGCTGGATGAACATCTAGAAAGTTGGATAACTATTGATCACATATGATCTGCAGAGGGAGAGA-TTTATAAGAAAGTGCTAAATTTAATCCATAGGAAAGTCAAAT-C-AAAAATCAATGAATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164496 140 - 192460366 CCTCTTCTTATGGAAGGAGCGCTGGGTGAACATCTAGAAAGTTGGATAACTATTGATCACATATGATCTGCAGAGGGAGAGA-TTTATAAGAAAGTGCTAAATTTAATCCATAGGAAAGTCAAAT-C-AAAAATCAATGAATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          183995 140 -  11645122 CCTCTTCTTATGGAAGGAGCGCTGGGTGAACATCTAGAAAGTTGGATAACTATTGATCACATATGATCTGCAGAGGGAGAGA-TTTATAAGAAAGTGCTAAATTTAATCCATAGGAAAGTCAAAT-C-AAAAATCAATGAATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169199 140 -   6739814 CCTCTTCTTATGGAAGTAGCGCTGGGTGAACATCTAGAAAGTTGGATAACTATTGATCACATATGATCTGCAGAGGGAGAGA-TTTATAAGAAAGTGCTAAATTTAATCCATAGGAAAGTCAAAT-C-AAAAATCAATGAATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59231 140 - 101219884 CCTCTTCTTATGGAAGTAGCGCTGGGTGAACATCTAGAAAGTTGGATAACCATTTATCACATATGATCTGCAGAGGGAGAGA-TTTATAAGAAAGTGCTAAATTTAATCCATAGGAAAGTCAAAT-T-GAAAATCAATGAATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181382 140 -    785044 CCTCTTCTTATGGAAGTAGCGCTGGGTGAACATCTAGAAAGTTGGATAACTATTGATCACATATGATCTGCAGAGGGAGAGA-TTTATAAGAAAGTGCTAAATTTAATCCATAGAAAAGTCAAAT-C-GAAAATCAATGAATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70442 140 -  10971483 CCTCTTCTTATGGAAGTAGCGCTGGGTGAACATCTAGAAAGTTGGATAACTATTTATCACATATGATCTGCAGAGGGAGAGA-TTTATAAGAAAGTGCTAAATTTAATCCATAGGAAAGTCAAAT-A-GAAAATCAATGACTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928296 139 -  13128814 CCTCTTCTTATGGAAGTATCTCTGGGTAGACAGCTGGAAAATCGGATAAATATTTAT--TACATGATCTGCAAAGGGAGAGGGTTTATAAGAAAGTGCTAAATTTAATCCATAGGAAAACCCAAT-A-AAAAATCAGCGAACT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7656884 141 +  14377064 CCTCTTCTTATGGAAGTATCTCTGGGTGGACAGCTGGAAAATCGGCTAAATATTTATCACACATGATCTGCAAAGGGAGAGATTTTATAAGAAAGTGATAAATTTAATCCATAGGAAAGTCCAAT-A-AAAAATCAGTGAACT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125265 142 -   9889416 CCTCTTCTTATGGAAGTATCTCTGGGTGGACAGCTGGAAAATTGGATAAATATTTATCACACATAATCTGCAAAGGAATAAGGTTTATAAGAAAGTGCTAAATTTAATCCATAGGAAAGCCCAATAA-AAAAATCAGTGAACT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30869571 141 -  47401472 CCTCTTCCTATGGAAGTAGCTTTGTGTGTACAACTAGAAATTTGGATGAATATTTATCATACATGATCTGCAAAGGGGCAGGGTTTTTAAGAAAGTGGTAAATTTAATCCAGAGAAAAGCCATAT-C-AAAAAACAATGAACT
i micMur3.chr31                I 318 C 0
s otoGar3.GL873528              20751755 134 +  38779656 TCTTTTCCTGTGGAAGTAGCTCGTGGTGGACAGCTAGAAAGTTGAATGGATATGTATGATGCATGATCTGAACAAAGAAAAGGTTTATAAGAAAGTGGTAAATTTATTTTTAAAAA-------TT-C-AATGAATAATAAACT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22700069 118 -  98207768 ----------GGGAAATGAC------TGAGTAGCT---AAGTTGGATGGATATTCATAGCATATGTTCTG---AGAAGGAGG-TTGCCAAGGATATGCTAAGCTCGAGTCAGAGAAATACCAAAT-C-AAAGGCTACTGCATT
i mm10.chr16                   C 0 I 1914
s canFam3.chr31                 28789555 142 -  39895921 CTTCTTCCTGTGAAAGTAACTCTGGGTGTATACCTAGAAAGTTAAGTGTATATAAATCATACATGACCTACAAAGGGAGATAGTTTAAAAGGAAGTGCTAAATTTAACCCAAAGGAATGCCCAAC-CAAAAAAACAATAAGCT
i canFam3.chr31                C 0 C 0
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I
e dasNov3.JH568778               6687136  98 +   6883506 I

a score=509033.000000
s hg38.chr14_GL000009v2_random    172993 46 +    201709 TTCCATTTGTAGTTTTCCCTAGGGGCTCTACTCTCAAGATGGCTTA
s panTro5.chr9                  41863046 46 + 116767853 TTCCATTTGTAGTTTTCCCTAGGGGCTCCACTCTCAAGATGGCTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830620 46 + 205426864 TTCCATTTGTAGTTTTCCCTAGGGTCTCTACTCTCAAGATGGCTTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240077 46 +    245036 TTCCATTTGTAGTTTTCCCTAGGGGCTCTACTCTCAAGATGGCTTA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109785 45 -  86207423 TTCCATTTGTACTTTTCTCT-GGGGCTCTACCCTCAAGATGGCTTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265429 46 - 204787373 TTCCATTTGTAGTTTTCCCTAGGGGCTCTACTCTCAAGATGGCTTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164636 46 - 192460366 TTCCATTTGTAGTTTTCCCTAGGGGCTCTACTCTCAAGATGGCTTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184135 46 -  11645122 TTCCATTTGTAGTTTTCCCTAGGGGCTCTACTCTCAAGATGGCTTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169339 46 -   6739814 TTCCATTTGTAGTTTTCCCTTGGGGCTCTACTCTCAAGATGGCTTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59371 46 - 101219884 TTCCATTTGTAGTTTTCCCTAAGGGCTCTACTCTCAAGATGGTTTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181522 46 -    785044 TTCCATTTGTAGTTTTCCCTAGGGGCTCTACTCTCAAGATGGCTTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70582 46 -  10971483 TTCCATGTGTAGTTTTCCCTAGGGGCTCTACTCTCAAGATGGCTTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928435 46 -  13128814 TTCCATTTGTAATTTTCCCTGTGGACTCTACTCTCAAGATGGCCTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657025 46 +  14377064 TTCCATTGGTAATTTTCCCTATGGACTCTACTCTCAAGATGGCCTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125407 46 -   9889416 TTCCATTTGTAATTTTCCCTATGGACTCTACTCTCAAGATGGCCTA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30869712 46 -  47401472 TTCCTTATGTAATTTTCTTCATGAGCTCTACTTTGGAGATTACTTA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20751889 42 +  38779656 TTC----TGTAATGTTCATAATGGGTTCTACTTTGGAGATGGCTTA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28789697 46 -  39895921 TTCCATATGTTCTTTTTCTCATGGGTGCTACTCTCAAGATGGCTTA
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22700187 1914 -  98207768 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I
e dasNov3.JH568778               6687136 98 +   6883506 I

a score=1078799.000000
s hg38.chr14_GL000009v2_random    173039  98 +    201709 AATGCATTAGAATTCAATGACTAGGCAAAAT--TGTTTGTTAGTGACATAAAAGCAAGGTAAGCATTTCTGCTTTATGAGTCCAAGCACAGGGACACTTG
s panTro5.chr9                  41863092  98 + 116767853 AATGCATTAGAATGAAATGACTAGGCACAAT--TGTTTGTTAGTGACATAAAAGCAAGGTAAGCATTTCTGCTTTATGAGTCCAAGCACAGGGACATTTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830666  98 + 205426864 AATGCATTAGAATTCAATGACTAGGCACAAG--TGTTTGTTAGTGACATCAAAGCAAGGTAAACATTCCTGCTCTATGAGTCCAAGCACAGGGACACTTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240123  98 +    245036 AATGCATTAGAATTCAATGACTAGGCACAAG--TGTTTGTTAGTGACATCAAAGCAAGGTAAGCATTTCTGCTCTATGAGTCCAAGCACAGGGACACTTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109830  98 -  86207423 AATGCATTAGAATTCAATGACTAGGCACAAG--TGTTTGTTAGGGACATCAAAGCAAGGTAAACATTCCTGCTTTGTGAGTCCAAGCACAGGGACACTTG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265475  97 - 204787373 AATACATTAGAATTCAATGACTAGTCACAAG--TGTTTGTTGGTGATATCAAAGCAAGATAAACATTCCTGCTCTGTGAGTCCAAGCACAGGGACAC-TG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164682  97 - 192460366 AATACATTAGAATTCAATGACTAGTCACAAG--TGTTTGTTGGTGATATCAAAGCAAGGTAAACATTCCTGCTCTGTGAGTCCAAGCACAGGGACAC-TG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184181  97 -  11645122 AATACATTAGAATTCAATGACTAGTCACAAG--TGTTTGTTGGTGATATCAAAGCAAGGTAAACATTCCTGCTCTGTGAGTCCAAGCACAGGGACAC-TG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169385  97 -   6739814 AATACATTAGAATTCAATGACTAGTCACAAG--TGTTTGTTGGTGATATCAAAGCAAGGTAAACATTCCTGCTCTGTGAGTCCAAGCACAGGGACAC-TG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59417  98 - 101219884 AATACATTAGAATTCAATGACTAGTCACAAG--TGTTTGTTGGTGATACCAAAGCAAGGTAAACATTCCTACTCTGTGAGTCCAAGCACAGGGACACTTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181568  97 -    785044 AATACATTAGAATTCAATGACTAGTCACAAG--TGTTTGTTGGTGATATCAAAGCAAGGTAAACATTCCTGCTCTGTGAGTCCAAGCACAGGGACAC-TG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70628  98 -  10971483 AATACATTAGAATTCAACGACTAGTCACAAG--TGTTTGTTGGTGATATCAAAGCAAGGTAAACATTCCTGCTCTATGAGTCCAAGCACAGGGACACTTG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928481  98 -  13128814 AATGCATTAGAATCCAATGAGTAGTCAAAAG--TGTGTGTTAGTGACATCAAAGCAAGGTAAATGTTCCTGCCCTCTGAGTTAAAGCACGGGGTCACTTG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657071  98 +  14377064 AATGCATTAGAATCCAATGAGTAGCCAAAAG--TGTGTGTTAGTGACATCAAAGCAAGGTAAATGTTCCTGCTCTCTGAGTTCAAGCACGGGGGCACCTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125453  98 -   9889416 AATGCATTAGAATCCAACGAGTAGTCAAAAG--TGTGTGTTAGTGACATCAAAGCAAGGTAAATGTTCCTGCTCTCTGAGTTCAAGCACAGGGGCACCTG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30869758  96 -  47401472 AAAGCATTACAATTCTATGAATAGTCACACA--TCTCTGTTAATGATACAAAAACAAGTTAAACATTCTTG--CTCTGAGTCCAAGCAGAAGGACACCTG
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20751931  94 +  38779656 AAAATACTAAAATTCTATGACTAGTCACAAG--TCTCTGTTAGTGATATAAAAGCAAGCTAAATGTTCC----CATTGAGTCCAAGTAGAAGGACGCCTG
i otoGar3.GL873528             C 0 I 305
s canFam3.chr31                 28789743 100 -  39895921 AATGAGTTAGAATTCTATAAATAATTATAAAATTCTTCTTTAGTGATATCCAAGCAAGCTAAATGTTCTTGCTCTGTGAACTCAAGCACAAAAACACACG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6687234  93 +   6883506 AGTGCATTAGCATTATAGGAATAGTCA-AAG--TCTTTGTTAGTGACAACAAAGCAAGTTAAATGTTCTTCC----TGAGTCCCAGCTTAAGGTCACCTG
i dasNov3.JH568778             I 98 C 0
e mm10.chr16                    22700187 1914 -  98207768 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=424917.000000
s hg38.chr14_GL000009v2_random    173137 37 +    201709 GTTTTCTTTGGAAGG-ATATCATAAAGGCAATGTTTAT-
s panTro5.chr9                  41863190 37 + 116767853 GTTTTCTTTGGAAGG-ATATCATAAAGGCAATGTTTAT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830764 37 + 205426864 GTTTTCTTTGGAAGG-ATATCATAAAGGCAATGTTTAT-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240221 37 +    245036 GTTTTCTTTGGAAGG-ATATCATAAAGGCAATGTTTAT-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109928 37 -  86207423 GTTTTCTTTGGAAGG-ATATCATAAAGGCAATGTTTAT-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265572 37 - 204787373 GTTTCCTATGGAAGG-ATATCTTAAAGGCAATGTTTAT-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164779 37 - 192460366 GTTTCCTATGGAAGG-ATATCTTAAAGGCAATGTTTAT-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184278 37 -  11645122 GTTTCCTATGGAAGG-ATATCTTAAAGGCAATGTTTAT-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169482 38 -   6739814 GTTTCCTTTGGAAGGAATATCTTAAAGGCAACGTTTAT-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59515 37 - 101219884 GTTTCCTTTGGAAGG-ATATCATAAAGGCAATGTTTAT-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181665 37 -    785044 GTTTCCTTTGGAAGG-ATATCTTAAAGGCAATGTTTAT-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70726 37 -  10971483 GTTTCCTTTGGGAGG-ATATCATAAAGGCAATGTTTAT-
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928579 37 -  13128814 GTTTCCTTTGGAAGA-ATATCATAAAGGAAATGTTGAT-
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657169 37 +  14377064 GTTTCTTTTGGAAGA-ATATCATAAAGTAAATGTTGAT-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125551 37 -   9889416 GTTTCCTTTGGAAGA-ATATCATAAAGGCAATGTTGAT-
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30869854 37 -  47401472 GTTTCCTTTGAATGG-ACATCCCAAAGGCAATGTTTAT-
i micMur3.chr31                C 0 I 83
s otoGar3.GL873528              20752330 37 +  38779656 GTTTCCTTTGGATGG-GCATTTCGAAGGCAATATTTAC-
i otoGar3.GL873528             I 305 C 0
s canFam3.chr31                 28789843 33 -  39895921 GTTTCCTTTGT-----ATATCACAAAGGCAATGTTTAC-
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6687327 34 +   6883506 GTTTACTTTGG-----GTATTATGAAGACAAGGTTTACT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22700187 1914 -  98207768 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=765416.000000
s hg38.chr14_GL000009v2_random    173174 81 +    201709 GAGTAATCCCTCATTGTCTTTTCTTCTGTAGCATTCAATGCTATG----TACTATAATTTAGAAATGAAAACTACT-TAAAGA----CCA
s panTro5.chr9                  41863227 81 + 116767853 GAGTAATCCCTCATTGTCTTTCCTTCTGTAGCATTCAATGGTATG----TACTATAATTTAGAAATGAAAACTACT-TAAAGA----CCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830801 81 + 205426864 GAGTAATCTCCCATTGTCTTTTCTTCTGTAGAATTCAATGGTATG----TACTATAATTTAGAAACAAAAACTACT-TAAAGA----CCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240258 81 +    245036 GAGTAATCTCCCGTTGTCTTTTCTTCTGTAGCATTCAATGGTATG----TACTATAATTTAGAAATGAAAACTACT-TAAAGA----CCA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42109965 77 -  86207423 GAGTAAT----CATTGTCTTTTCTTCTGTAGCATTCAATGGTATG----TACTATAATTTAGAAACGAAAACTACT-TAAAGA----CCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265609 81 - 204787373 GAGTAATCCCTCATTGTCTTTTCTTCTGTAGCATTCAATGGTATG----TACTATAATTTAGAAACGAAAACTACT-TAGAGA----CCG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164816 81 - 192460366 GAGTAATCCCTCATTGTCTTTTCTTCTGTAGCATTCAATGGTATG----TACTATAATTTAGAAACGAAAACTACT-TAGAGA----CCG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184315 81 -  11645122 GAGTAATCCCTCATTGTCTTTTCTTCTGTAGCATTCAATGGTATG----TACTATAATTTAGAAACGAAAACTACT-TAGAGA----CCG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169520 81 -   6739814 GAGTGATCCCTCATTGTCTTTTCTTCTGTGGCATTCAATGGTATG----TACTATAATTTAGAAACGAAAACTACT-TAGAGA----CCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59552 81 - 101219884 GAGTAATCCCTCACTGTCTTTTCTTCTGTAGCATTCAATGGTATG----TACTATAATTTAGAAACAAAAACTACT-TAGAGA----CCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181702 81 -    785044 GAGTAATCCCTCATTGTCTTTTCTTCTGTAGCATTCAATGGTATG----TACTATAATTTAGAAACGAAAACTACT-TAGAGA----CCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70763 81 -  10971483 GAATAATCCCTCATTGTCTTTTCTTCTGTAGCATTCAATGGTATG----TACTATAATTTAGAAATGAAAACTACT-TAAAGA----CCG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928616 81 -  13128814 GAGTAGTCCCTAGTTGACTTTTCTTCTGTAGCATTCAATGATATG----TACCATAATTTAGAAACAAAAACTACT-TAAAGA----CCA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657206 81 +  14377064 GAGTAGTCCCTAGTTGTCTTTTCTTCTGTAGCATTCAATGGTATG----TACCATAATTTAGAAACGAAAACTACT-TAAAGA----CCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125588 81 -   9889416 GAGTAATCCCTAGTTGTCTTTTCTTCTGTAGCATTCAATGGTATG----TACCATACTTTAGAAACGAAAACTACT-TAAAGA----CCA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20752367 61 +  38779656 AAATGATTGCTAGTTGCTTTTTCCTCTGTGATGTTCACTGGTATG----TATTATAATTTAG-------------T-TA-----------
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28789877 80 -  39895921 AAGTAATCAGTTGATTTCCCCCATTTTGT---------TGACATGACTATATCCTACTTTAGAAACTGGAACTACT-CAGATAAAATCCA
i canFam3.chr31                I 1 I 2
s dasNov3.JH568778               6687361 56 +   6883506 GAATAA--------------------------GTTCACATGTATG----TATTATGATATAGAAACTGAAACTAATATAAATT----CCA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22700187 1914 -  98207768 I
e micMur3.chr31                 30869891 83 -  47401472 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=976473.000000
s hg38.chr14_GL000009v2_random    173255 92 +    201709 CTTGCTAAGTTTCATGTATTTCAAATTCTCAGATCCTGAGTGTTTAAATATGTCAGTACTTCTTCATG-AAAAAAACATAATCTTTGCCAAGT
s panTro5.chr9                  41863308 93 + 116767853 CTTGCCAAGTTTCATGTATTTCAAATTCTCAGATCCTGAGTGTTTAAACAAGCCTATATTTCTTCGTGGAAAAAAACATAATCTTTGCCAAGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830882 91 + 205426864 CTTGCTAAGTTTCATGTATTTCAAATTCTCAGATCCTGAGTGTTTAAATATGCCTATATTTCTTCATG-AAAAAAA-ATAATCTTTGCCAAGT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240339 92 +    245036 CTTGCTAAGTTTCATGTATTTCAAATTCTCAGATCCTGAGTGTTTAAATATGCCTATATTTCTTCATG-AAAAAAACATAATCTTTGCCAAGT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110042 92 -  86207423 CTTGCTAAGTTTCATGTATTTCAAACTCTCAGATCCTGAGTGTTTAAATATGCCTATATTTCTTCATG-AGAAAAACATAATCTTTGCCAAGT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265690 91 - 204787373 CTTGTTAAGTTTCATATATTTTGGATTCTCAGACCCTGAGTGTTTAAATATGCCTATATTTCTTCATG--AAAAACCATAAGCTTTGCCAAGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164897 91 - 192460366 CTTGTTAAGTTTCATATATTTTGGATTCTCAGACCCTGAGTGTTTAAATATGCCTATATTTCTTCATG--AAAAACCATAAGCTTTGCCAAGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184396 91 -  11645122 CTTGTTAAGTTTCATATATTTTGGATTCTCAGACCCTGAGTGTTTAAATATGCCTATATTTCTTCATG--AAAAACCATAAGCTTTGCCAAGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169601 91 -   6739814 TTTGTTAAGTTTCATTTATTTTGGATTCTCAGACCCTGAGTGTTTAAATATGCCTATATTTCTTCATG--AAAAACCATAAGCTTTGCCAAGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59633 91 - 101219884 CTTGTTAAGTTTCATATATTTTGGATTCTCAGACCCTGAGTGTTTAAATATGCCTATATTTCTTCATG--AAAAACCATAATCTTTGCCAAGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181783 91 -    785044 TTTGTTAAGTTTCATATATTTTGGATTCTCAGACCCTGAGTGTTTAAATATGCCTATATTTCTTCATG--AAAAACCATAAGCTTTGCCAAGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70844 91 -  10971483 CTTGTTAAGCTTCATATATTTTGGATTCTCAGATCCTGAGTGTTTAAATATGCCTATATTTCTTCATG--AAAAACCATAATCTTTGCCAAGT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928697 91 -  13128814 CATGTTAAGTTTCATG--TTTCAGATTATCAGATCCTGAATGTTTAAATATGCCTATATGTCTTCATGAAAAAAACCATTATCTTTGCCAAGT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657287 91 +  14377064 CTTGTTAAGTTTCATG--TTTCAGATTCTCAGATCCTGAATGTTTAAATATGCCTATATGTCTTCATGAAAAAAACCATGATCTTTGCCAAGT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125669 91 -   9889416 CTTGTTAAGTTTCATG--TTTCAGATTCTCAGATCCTGAATGTTTAAATATGCCTATATGTCTTCATGAAAAAAACCATGATCTTTGCCAAGT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30869974 91 -  47401472 CTTGTTAAATTTCAAGTATCTCAGAATCTCAGAGCCTGAATGCTTAAATATGCTTATATTTCTTCATG--GGAAAACAGGATCTTTGCCGAGT
i micMur3.chr31                I 83 C 0
s otoGar3.GL873528              20752428 90 +  38779656 CTTGTTAAATTTCAAGTTTCTCAGAATCTGAAAGCCTGAATGTTTAAAAGTGTTTATATTTCTTCAT---GAAAACCAGGATCTTTGCCAAGT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28789959 83 -  39895921 TGTGTAAAGTTTC-------TCAGAATCTCAGAACGTCAGTGTTTTAATCTGCCTATAGTT-TGCATA--AAAAATCAGGATCTTTGCCTAGT
i canFam3.chr31                I 2 C 0
s dasNov3.JH568778               6687417 85 +   6883506 ---CTTAAGTTTCAAGTCTCTCAGAATCT--GAGCCTGAATGCTTGACTCTGCCTAGGTTTCTGCATT--AGAAACCAGGAATTTT-CAGAGT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22700187 1914 -  98207768 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=96398.000000
s hg38.chr14_GL000009v2_random    173347 9 +    201709 TAGAAAAAG
s panTro5.chr9                  41863401 9 + 116767853 TAGAAAAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830973 9 + 205426864 TAGAAAAAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240431 9 +    245036 TAGAAAAAG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110134 3 -  86207423 TAG------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265781 9 - 204787373 TAGAAAAAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164988 9 - 192460366 TAGAAAAAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184487 9 -  11645122 TAGAAAAAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169692 9 -   6739814 TAGAAAAAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59724 9 - 101219884 TAGAAAAAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181874 9 -    785044 TAGAAAAAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70935 9 -  10971483 TAGAAAAAG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928788 4 -  13128814 TAG-----G
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657378 9 +  14377064 TAGGAAAAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125760 9 -   9889416 TAGGAAAAG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30870065 9 -  47401472 TAGGAAAAG
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20752518 9 +  38779656 TAGGAAACA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22702101 9 -  98207768 TAAGAAAAA
i mm10.chr16                   I 1914 C 0
s canFam3.chr31                 28790042 9 -  39895921 TAGGAAAAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6687502 9 +   6883506 TAGGAACAG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=35780.000000
s hg38.chr14_GL000009v2_random    173356 2 +    201709 AA
s panTro5.chr9                  41863410 2 + 116767853 AA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830982 2 + 205426864 AA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240440 2 +    245036 AA
i gorGor5.CYUI01000160v1       C 0 C 0
s ponAbe2.chr1                 105599830 2 + 229942017 AA
i ponAbe2.chr1                 N 0 N 0
s nomLeu3.chr21                 42110137 2 -  86207423 AA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265790 2 - 204787373 AA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164997 2 - 192460366 AA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184496 2 -  11645122 AA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169701 2 -   6739814 AA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59733 2 - 101219884 AA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181883 2 -    785044 AA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70944 2 -  10971483 AA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928792 2 -  13128814 AA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657387 2 +  14377064 AA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125769 2 -   9889416 AA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30870074 2 -  47401472 AA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20752527 2 +  38779656 AA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22702110 2 -  98207768 GA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28790051 2 -  39895921 AA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6687511 2 +   6883506 AA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=230535.000000
s hg38.chr14_GL000009v2_random    173358 18 +    201709 AAA--GTCATATTCC-CATTT
s panTro5.chr9                  41863412 18 + 116767853 AAA--GTCATATTCC-CATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77830984 18 + 205426864 AAA--GTCATATTCC-CATTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240442 18 +    245036 AAA--GTCATATTCC-CATTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110139 18 -  86207423 AAA--GTCATATTCC-CATTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265792 16 - 204787373 --A--GTCATATTCC-CATTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    164999 16 - 192460366 --A--GTCATATTCC-CATTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184498 16 -  11645122 --A--GTCATATTCC-CATTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169703 16 -   6739814 --A--GTCATATTCC-CATTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59735 16 - 101219884 --A--GTCATATTCC-CATTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181885 16 -    785044 --A--GTCATATTCC-CATTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70946 18 -  10971483 --AATGTCATATTCC-CATTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928794 18 -  13128814 AAA--GTCATATTCT-CATTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657389 18 +  14377064 AAA--GTCATATTCC-CATTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125771 18 -   9889416 AAA--GTCATATTCC-CATTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30870076 18 -  47401472 GAA--GCCATATTCC-TATTT
i micMur3.chr31                C 0 I 21
s otoGar3.GL873528              20752529 18 +  38779656 AAA--AACATACTCC-TGTTT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22702112 18 -  98207768 GAA--GCCATATTCTACATT-
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28790053 18 -  39895921 AAA--AACATATTCC-CATTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6687513 18 +   6883506 AAA--GCCATATTCT-CATTT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=310261.000000
s hg38.chr14_GL000009v2_random    173376 26 +    201709 TTAACTAAAGGTAATCAGAAATTTGG
s panTro5.chr9                  41863430 26 + 116767853 TTAACTAAATGTAATCAGAAATTTGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831002 26 + 205426864 TTAACTAAATGTAGTCAGAAATTTGG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240460 26 +    245036 TTAACTAAATGTAGTCAGAAATTTGG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110157 26 -  86207423 TTAACTAAATGTAGTCAGAAATTTGG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265808 26 - 204787373 TTAGCTAAATGTAGTCAGAAATTTGG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165015 26 - 192460366 TTAGCTAAATGTAGTCAGAAATTTGG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184514 26 -  11645122 TTAGCTAAATGTAGTCAGAAATTTGG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169719 26 -   6739814 TTAGCTAAATGTAGTCAGAAATTTGG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59751 26 - 101219884 TTAGCTAAATGTAGTCAGAAATTTGG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181901 26 -    785044 TTAGCTAAATGTAGTCAGAAATTTGG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70964 26 -  10971483 TTAGCTAAATGTAGTCAGAAATTTGG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928812 26 -  13128814 TTAACTAAATGTAGTCAGAAATTTGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657407 26 +  14377064 TTAACTAAATGTAGTCATAAATTTGG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125789 26 -   9889416 TTAACTAAATGTAGTCAGAAATTTGG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20752547 26 +  38779656 TCAAATTAATATACTTAGAAATATGG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22702130 26 -  98207768 TCAAGCTAAGACAGTGGGAAATTTTG
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28790071 26 -  39895921 CCAACTTAATCTAATCAGAAAATTGG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6687531 26 +   6883506 CTGGCTTAATCTAATCAGAAATTAGG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30870094 21 -  47401472 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=2210118.000000
s hg38.chr14_GL000009v2_random    173402 180 +    201709 ACAGTTTTTAGCTTTCAATACATTATGTAATTTGGGTAACAGGCTGAATA---AAAGTAAGGAACTTCAGTTAAATTCA--GAGAGAAGCTAGT---AATTATTTCTAAGACTCAAATGTAT---A---GAAC----AGATCTCTGATATTAAGGATAAGACCCTCAAAGGTGACCCAAAATGGGTAATTGTGGGATT
s panTro5.chr9                  41863456 180 + 116767853 ACAGTTTTTAGCCTTCAATACATTATGTAATTTGGGTAACAGGCTGAATA---AAAGTAAGGAACTTCAGTTAAATTCA--GAGAGAAGCTAGT---AATTATTTCTAAGACTCAAATGTAT---A---GAAC----AAATCTCTGATATTAAGGGTAAGACCCTCAAAGGTGACCCAAAATGGGTAATTGTGGGATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831028 180 + 205426864 ACAGTTTTTAGCCTTCAATACATTATGTAATTTGGGTAATAGGCTGAATA---AAAGTAAGGAACTTCAGTTAAATTCA--GAGAGAAACTAGT---AATTGTTTCTAAGACTCAAATGTAT---A---GAAC----GGATCTCTGATAATAAGGATAAGACCCTCAAAGGTGACCCAAAATGGGTAATTGTGGGATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240486 180 +    245036 ACAGTTTTTAGCCTTCAATACATTATGTAATTTGGGTAATAGGCTGAATA---AAAGTAAGGAATTTCAGTTAAATTCA--GAGAGAAACTAGT---AATTGTTTCTAAGACTCAAATGTAT---A---GAAC----AGATCTCTGATAATAAGGATAAGACCCTCAAAGGTGACCCAAAATGGGTAATTGTGGGATT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110183 176 -  86207423 ACAGTTTTTAGCCTTCAATACATTATGTAATCC---TAATAGGC-GAATA---AAAGTAAGGAACTTCAGTTAAATTCA--GAGAGAAGCTAGT---AATTGTTTCTAAGACTCAAATGTAT---A---GAAC----AGATCTCTGATATTAAGGATAAGACCCTCAAAGGTGACCCAAATTGGGTCATTGTGGGATT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204265834 178 - 204787373 ACAGTTTTTAGCCTTCAATACATTATGTAATTTGGATAATAGACTGAATA---AAAGTAAGGAACTTCAGTTAAATTC----AGAGAAGCTAGT---AATTGTTTCTAAGACTCAAATGTAT---A---GAAC----AGATTTCTGATATTAAGGATAAGACCCTCAAAGGTGACCCAAAATGGGTAATTGTGGGATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165041 180 - 192460366 ACAGTTTTTAGCCTTCAATACATTATGTAATTTGGGTAATAGACTGAATA---AAAGTAAGGAACTTCAGTTAAATTCA--GAGAGAAGCTAGT---AATTGTTTCTAAGACTCAAATGTAT---A---GAAC----AGATTTCTGATATTAAGGATAAGACCCTCAAAGGTGACCCAAAATGGGTAATTGTGGGATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184540 180 -  11645122 ACAGTTTTTAGCCTTCAATACATTATGTAATTTGGGTAATAGACTGAATA---AAAGTAAGGAACTTCAGTTAAATTCA--GAGAGAAGCTAGT---AATTGTTTCTAAGACTCAAATGTAT---A---GAAC----AGATTTCTGATATTAAGGATAAGACCCTCAAAGGTGACCCAAAATGGGTAATTGTGGGATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169745 180 -   6739814 ACAGTTTTTAGCCTTCAATACATTATGTAATTTGGGTAATAGACTGAATA---AAAGTAAGGAACTTCAGTTAAATTCA--GAGAGAAGCTAGT---AATTGTTTCTAAGACTCAAATGTAT---A---GAAC----AGATTTCTGATATTAAGGATAAGACCCTCAAAGGTGACCCAAAATGGGTAATTGTGGGATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59777 180 - 101219884 ACAGTTTTTAGACTTTAATACATTATGTAATTTGGGTAATAGACTGAATA---AAAGTAAGAAACTTCAGTTAAATTCA--GAGAGAAGCTAGT---AATTGTTTCTAAGACTCAAATGTAT---A---GAAT----ATATCTCTGATATTAAGCATAAGACCCTCAAAGGTGACCCAAAATGGGTAATTGTGGGATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          181927 180 -    785044 ACAGTTTTTAGCCTTCAATACATTATGTAATTTGGGTAATAGACTGAATA---AAAGTAAGGAACTTCAGTTAAATTCA--GAGAGAAGCTAGT---AATTGTTTCTAAGATTCAAATGTAT---A---GAAC----AGATTTCTGATATTAAGGATAAGACCCTCAAAGGTGACCCAAAATGGGTAATTGTGGGATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           70990 180 -  10971483 ACCGTTTTTAGCCTTCAAAACATTATGTAATTTGGGTAATAGACTGAATA---AAAGTAAGGAACTTCAGTTAAATTCA--GAAAGAAGCTAGT---AATTGTTTCTAAGACTTAAATGTAT---A---GAAC----AGATCTCTGATGCTAAGGATAAGACCCTCAAAAGTGACCCAAAATGGGTAATTGTGGGATT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10928838 180 -  13128814 ACAGTTTTTAGCCTTCAATACATTATGTAATTTGGGTAATAGGCCGAATA---AAAGTAAGAAATTTCAGTTAAATTCA--GAGAGAAGCTAGT---AACGGTTTCTAAGATTCAAATGTAT---A---GAAT----GGATCTCTGATACTAAGGATAAGACCCTCAAAAGTGAACCAAAATATGTAATTGTGGGATT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657433 180 +  14377064 ACAGTTTTTAGCCTTCAATACATTATGTAATTTGGGTAATAGGCGGAATA---AAAGTAAGAAATTTCAGTTAAATTCA--GAGAGAAGCTAGT---AATGGTTTCTAAGATTCAAATGTAT---A---GAAT----GGATCTCTGATATTAAGGATAAGACCTTCAAAAGTGACACAAAATATGTAATTGTGGGATT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125815 177 -   9889416 ACAGTTTTTAGCATTCAATACATTATGTAATTTGGGTAATAGGTGGAATA---AAAGTAAG--ATTTCAGTTAAATTCA--GAGAGAAGCTAGT---AATGGTTTCTAAGATTCAAATGTAT---A---GAAT----GGATCTCTGATATTAAGGATAAGACC-TCAAAAGTGAACCAAAATATGTAATTGTGGGATT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30870115 181 -  47401472 ACAGTTTTTAGCCTTCAGTATATTATGTGATTTGGGTAATAA--AGAATA---AAAGTAAGGAATTTCAGTTAAATTCA--GAAAGAAGCTAGTATAAATTGTTTCTAAATCTAAAATGTAT---A---GATC----ACATCTGTGCTATTAAGGATAAGACCCTCAAAAGTGACCCAAAATATGTAAATGTGAGTTT
i micMur3.chr31                I 21 C 0
s otoGar3.GL873528              20752573 182 +  38779656 ATGATTTTTAGCCTTCAATCTATTATATAATTTAGGCAATAAACAAAATA---AAAGTAAGACATTTTAGTTAAACTCA--GAAAGTAGCTAGTATAAATTGTTTCTAAGATT-AAGTACAT---A---TGGT----GTATCTATGATATTAAGGCTAGGACCCTCACCAGTGACCCAAAATGTGTAaatgggagttt
i otoGar3.GL873528             C 0 I 1
s mm10.chr16                    22702156 184 -  98207768 ACAGATTGTAGCCTGACACATATTATGAAATCTGTTGAATAAGTATAAAAAGTAAAAAAAAAAAATTCATCTAAGTTTA--GACAGAATTTAATATAAGTTGGTTTTAAGGATAAACTATGT---A---GGACAATTAGCTCTCAAGTCTTAAGAATAAAACCCTCAAAGTTGACTTCAGATATATAATTTC------
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28790097 179 -  39895921 AGGG-----AGCCTTCAATATATTATGTAATTCTAGAAATC-ATAGAATA---CAAGTAAAAAATTTCAGCTAACTTCA--TAGAGAAGCAAGT-GGAAATAATTTTAGGAATAAAATTTATAAAA---GAAG----AGATCTCTAGTATTAAGGATAAGGACCTTAAAAGTGATCTAAAATGTGTAATTGTGAGTTT
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6687557 179 +   6883506 ACACTTTCTAGCCTTTGATATG-CACATAATTCTGCTAATA----GAATA---CAAATAATGGATTTCATTTGAATTCATTGAAAAAGGTAAGT---GAAT-TTTTTAAAACTAAAATATAC---AGATGAGT----AGATATCTGGTATAGAAGATAAGACCATCAAAGGTAACCTAAAATGTATAGCTGTGAGCTt
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           79613 1093 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=11329.000000
s hg38.chr14_GL000009v2_random    173582 1 +    201709 A
s panTro5.chr9                  41863636 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831208 1 + 205426864 C
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240666 1 +    245036 A
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110359 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204266012 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165221 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184720 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169925 1 -   6739814 A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59957 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          182107 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           71170 1 -  10971483 A
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10929018 1 -  13128814 C
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657613 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125992 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30870296 1 -  47401472 A
i micMur3.chr31                C 0 I 1
s eulFla1.LGHW01000695v1           80706 1 +   1229009 A
i eulFla1.LGHW01000695v1       I 1093 I 376
s otoGar3.GL873528              20752756 1 +  38779656 a
i otoGar3.GL873528             I 1 I 1
s mm10.chr16                    22702340 1 -  98207768 A
i mm10.chr16                   C 0 I 7
s canFam3.chr31                 28790277 1 -  39895921 A
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6687736 1 +   6883506 a
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=2840175.000000
s hg38.chr14_GL000009v2_random    173583 228 +    201709 TTTTA-AGAGGAATCATCATATATTcttac-tgctataaatacagtcaaatgtcagataaatatactccactgaaatgttttctaggaatgatgttggaaccaatgttggtaattttga--aagt----catggagaggatttcagatgata-------gaagtcgggcaaatatcccaggtttaataaataagcaaatggtgagttc-caa----------------------agctgctgtatcaatgagcctcatattgatcc
s panTro5.chr9                  41863637 228 + 116767853 TTTTG-GGAGGAATCATCATAGATTcttac-tgctataaatacagtcaaatgtcagataaatatactccactgaaatgttttctaggaatgatgttggaagcaatgttggtaattttga--aagt----catggagaggatttcagatgata-------gaagtcgggcaactatcccaggtttaataaataagcaaatggtgagttc-caa----------------------aaatgctgtatcaatgagcctcatattgatcc
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831209 228 + 205426864 TTTTG-Ggaggaatcatcatagactcttac-tgctataaatacagtcaaatgtcagataaatatactccactgaaacgttttctaggaatgatgttggaaccaatgttggtaattttga--aagt----catggagacgatttcagatgata-------gaagttgggcaactatcccaggtttaataaataagcagatggtgagttc-caa----------------------aattgctgtatcaatgaatcttatattgatcc
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240667 228 +    245036 TTTTG-Ggaggaatcatcatagactcttac-tgctataaatacagtcaaatgtcagataagtatactccactgaaatgttttctaggaatgatgttggaaccaatgttggtaattttga--aagt----catggagatgatttcagatgata-------gaagttgggcaactatcccaggtttaataaataagcagatggtgagttc-caa----------------------aattgctgtatcaatgaatcctatattgatcc
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110360 228 -  86207423 TTTTG-GGAGGAATCATCATAGATTCTTAC-TGTTATAAATACAGTCAAATGTcagatgaatatactccactgaaatgtcctctaggaatgatgttggaaccaatgttggtaattttga--aagt----catggagaggatttcagatgatt-------gaagtcaggcaactatcccaggtttaataaataagcaaacggtgaattc-caa----------------------aaatgccgtatcaatgagcctcatattgatcc
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204266013 228 - 204787373 TTTTG-GGAGGAATCATCATAGATTcttac-tgctgtaaataaggtcaaatgtcagataaatatactccactgaaatgttttctaggaatgatgttggaaccaatgttggtaattttga--aagt----catggagaggatttcagatgtta-------gaagtcgggcaactatcccaggtttaataaataagcaaatggtgaattc-caa----------------------aaatgctgtatcaatgagccttgtattgatcc
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165222 228 - 192460366 TTTTG-GGAGGAATCATCATAGATTcttac-tgctgtaaataaagtcaaatgtcagataaatatactccactgaaatgttttctaggaatgatgttggaaccaatgttggtaattttga--aagt----catggagaggatttcagatgtta-------gaagtcgggcaactatcccaggtttaataaataagcaaatggtgaattc-caa----------------------aaatgctgtatcaatgagccttgtattgatcc
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184721 228 -  11645122 TTTTG-GGAGGAATCATCATAGATTcttac-tgctgtaaataaggtcaaatgtcagataaatatactccactgaaatgttttctaggaatgatgttggaaccaatgttggtaattttga--aagt----catggagaggatttcagatgtta-------gaagtcgggcaactatcccaggtttaataaataagcaaatggtgaattc-caa----------------------aaatgctgtatcaatgagccttgtattgatcc
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          169926 228 -   6739814 TTTTG-GGAGGAATCATCATAGATTcttac-tgctgtaaataaggtcaaatgtcagataaatatactccactgaaatgttttctaggaatgatgttggaaccaatgttggtaattttga--aagt----catggagaggatttcagatgtta-------gaagtcgggcaactatcccaggtttaataaataagcaaatggtgaattc-caa----------------------aaatgctgtatcaatgagccttgtattgatcc
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    59958 228 - 101219884 TTTTG-GGAGGAATCATCATAGATTcttac-tgctgtaaataaggtcaaatgtcagataaatatactccactgaaatgttttctaggaatgatgttggaaccaatgttggtaattttga--aagt----catggagaggatttcagatgtta-------gaagtcgggcaactatcccaggtttaataaataagcaaatggtgaattc-caa----------------------aaatgctgtatcaatgagccttgtattgatcc
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          182108 228 -    785044 TTTTG-GGAGGAATCATCATAGATTcttac-tgctgtaaataaggtcaaatgtcagataaatatactccactgaaatgttttctaggaatgatgttggaaccaatgttggtaattttga--aagt----catggagaggatttcagatgtta-------gaagtcgggcaactatcccaggtttaataaataagcaaatggtgaattc-caa----------------------aaatgctgtatcaatgagccttgtattgatcc
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           71171 228 -  10971483 TTTTG-GGAGGAATCATCATAGATTcttac-tgctgtaaataaggtcaaatgtcagataaatatactccactgaaatgttttctaggaatgatgttggaaccaatgttggtaattttga--aagt----aatggagaggatttcagatgtta-------caagtcgggcaactatcccagatttaataaataagcaaatggtgaattc-caa----------------------aaatgctgtatcaatgagccttgtattgatct
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10929019 229 -  13128814 TTTGGTGGTAGAataatcatagagtcttac-tgctataaataaggtcaaatgtcagataaatatactccactgcaaagttttctaggaatgatgttggaaccaatgttggtaattttga--gagt----catgaagaggatttcagatgata-------gaagtcgggcaactctcccaggtttaataaagaagcaaatggtgaattc-caa----------------------aaatgctgtatcaatgaacctcatattgatct
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657614 229 +  14377064 TTTggtggtggaatcatcatagagccttac-tgctataaataaggtcaaatgtcagataaatatactccactgaaaagttttctaggaatgatgttggaaccaatgttggtaattttga--gagt----catggagaggatttcagatgata-------gaagttgggcaactatcccaggtttaataaagaagcaaatggtgaattc-caa----------------------aaatgctgtatcaatgaacctcatattgatct
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4125993 229 -   9889416 TTTggtggcggaatcatcatagagtcttac-tgctataactaaggtcaaatgtcagataaatatactccactaaaaagttttctaggaatgatgttggaaccaatgttggtaattttga--gagt----catggagaggatttcagatgata-------gaagttgggcaaccatcccaggtttaataaagaagcaaatggtgaattc-caa----------------------aaatgctgtatcaatgaaccttatattgatct
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30870298 236 -  47401472 TTTTA-ggggagataatgatagattcttacttgcaataaatgaactcaagtgtccaataaagacactccacagaaaagtcttctaggaatggtgttggaa-caaagttggtga-tttgagggagt----catggggagaattttagatgccagaaccctaaagctgggcaactatcccagttttaataaagaaacaaatggcaaattc-caa----------------------aaatgctgtatcaatgagccttatattgatcc
i micMur3.chr31                I 1 C 0
s otoGar3.GL873528              20752758 230 +  38779656 tttgg-ggggagatagcaatagactcttac-tgctataaataagctcaagtgtcaaatgaaaacattctactaaaaagtcttctaggaatggtgttggaa-aaatgttggtga-tttga--gagt----catggag---atttgagatgccaaaacctagaatctgggcaacaatcccaggattaataaagaagcaaatggtgaattc-caa----------------------aaatgctttatcaatgaaccttatattgatcc
i otoGar3.GL873528             I 1 C 0
s mm10.chr16                    22702348 238 -  98207768 TGTGG-AGggaaatagtggtagctcttaag-tg-tacaaataagtgcatgtgacaaattaatgtagtccagtggaaagtcttctaggaatgtcgcaggaa-gaatgcttgtgattttga--gaatgacacacagagagagctaggaatggcaaaatcctgaagctggttgaccatcccaggtttaattcagcagcaaatggcatatcctcca----------------------aaatgcactgacagtgagttttatattcatcc
i mm10.chr16                   I 7 C 0
s canFam3.chr31                 28790278 257 -  39895921 GTTgc-agggagatagcattagattcttat-tgctataa--aagttcaggtctcagataaatatactggatcaaaaagtcttctagaaatgatagtgaaaacaatgttggtgattttgagagagc----catggagaggggttgagatgttagaacccagaagaaaggtaactattcgagcttgaaaaaagaagcaaatggtgaattc-CAAATGTCAATTGAAGTTATCAGCTAAAGGCTCAACCACTGAGCCACTCAGGCATCC
i canFam3.chr31                C 0 I 75
s dasNov3.JH568778               6687737 230 +   6883506 ggtgg-ggggacacagtgggagattcacac-tgctataaatgagtttaagtctcca--gaattcactggattgaaaagtcttctaggaatggcatttgaactaatgttggtaattttgaaagagc----catcgagaggggcagacaggccagaatcctggagatcagcaactatcccaggtataataaag----agatggtgaattc-caa----------------------aaa-gctatctcaaggagccttctattgatcc
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           80707 376 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=748740.000000
s hg38.chr14_GL000009v2_random    173811 53 +    201709 tgagcacaatttcagaaaggtccattaaatgggtctttggagagcacttagga
s panTro5.chr9                  41863865 53 + 116767853 tgagcacaatttcaggaagatccattaaatgggtctttggagagcacttagga
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831437 53 + 205426864 tgagcacaatttcaggaaggtccattaaatgggtcttttgagagcacttagga
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240895 53 +    245036 tgagcacaatttcaggaaggtccattaaatgggtcttttgagagcacttagga
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110588 52 -  86207423 agagcacagtttcaggaaggtccattaaatgggtcttttgagagca-ttagga
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204266241 53 - 204787373 tgagcacgatttcaggaaggtccattaagtgggtctttggagagcacttagga
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165450 53 - 192460366 tgagctcgatttcaggaaggtccattaagtgggtctttggagagcacttagga
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          184949 53 -  11645122 tgagcacgatttcaggaaggtccattaagtgggtctgtggagagcacttagga
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          170154 53 -   6739814 tgagcacgatttcaggaaggtccattaagtgggtctttggagagcacttagga
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    60186 53 - 101219884 tgagcacgatttcaggaaggtccattaagtgggtcttttgagagcacttagga
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          182336 53 -    785044 tgagcacgatttcaggaaggtccattaagtgggtctttggagagcacttagga
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           71399 53 -  10971483 ggagcacaatttcagaaaggtccattaagtgggtcttttgagagcacttagga
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10929248 53 -  13128814 tgagaacaatttcaggaaggtccattaaatgggtgttttgagagcacttaggc
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657843 53 +  14377064 tgagaacaatttcaggaaggtccattaaatgagtgttttgagagcacttaggt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4126222 53 -   9889416 tgagaacaatttcaggaaggtccattaaatgggtgttttgagagcacttaggt
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30870534 53 -  47401472 tgagcacaatttcaagaaagtccattaaatgagtgttttgagaacacttagga
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20752988 53 +  38779656 tgagcgcagcttcaggaaagtccattaaatgggcatcttgagagcacttagta
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22702586 52 -  98207768 tgaacataacgttaggaaggcctattaaatg-gtgtctcaagagcacttagca
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 11105099 50 +  39895921 tga---cgatttcaggaaggtccattaaatgagtgttttgagaacacttagga
i canFam3.chr31                n 75 I 42
s dasNov3.JH568778               6687967 53 +   6883506 tgagcacaatttcaggaaggtccattaaatgggtgttttgagagcacttagga
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           80707 376 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=630221.000000
s hg38.chr14_GL000009v2_random    173864 54 +    201709 taaaaggctggcagcagagattcactaagagcaatggtgcc----------------------------------------------aagc-ttgcctctt
s panTro5.chr9                  41863918 54 + 116767853 taaaaggctggcagcagggattcactaagagcaatggtgcc----------------------------------------------aagc-ttgcctctt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831490 54 + 205426864 taaaaggctggcagcagggattcactaagagcaatggtgcc----------------------------------------------gagc-ttgcctctt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          240948 54 +    245036 taaaaggctggcagcagggattcactaagagcaatggtgcc----------------------------------------------aagc-ttgcctctt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110640 54 -  86207423 tagaaggctggcagcagagattcactaagagcaatggtgcc----------------------------------------------aagc-ttgcctctt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204266294 55 - 204787373 taaaaggctggcagcagggattcactaagagcaatagtgcc----------------------------------------------aaggtttgcctctt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165503 55 - 192460366 taaaaggctggcagcagggattcactaagagcaatagtgcc----------------------------------------------aaggtttgcctctt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          185002 55 -  11645122 taaaaggctggcagcagggattcactaagagcaatagtgcc----------------------------------------------aaggtttgcctctt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          170207 54 -   6739814 taaaaggctggcagcaggggttcactaagagcaatagtgcc----------------------------------------------aagg-ttgcctctt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    60239 54 - 101219884 taaaaggctggcagcagggattcactaagagcaatagtgcc----------------------------------------------aagg-tcgcctctt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          182389 54 -    785044 taaaaggctggcagcagggattcactaagagcaatagtgcc----------------------------------------------aagg-ttgcctctt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           71452 54 -  10971483 taaaaggctggcagcagggattcactaagagcaatagtgcc----------------------------------------------aagg-ttgcctctt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10929301 54 -  13128814 taaaaggctggcagcagggattcactaagagcaatggtgcc----------------------------------------------aagc-ttgcctctt
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657896 54 +  14377064 taaaaggctggcagcagggattcactaagagcaacggtgcc----------------------------------------------aagc-ttgcctctt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4126275 54 -   9889416 taaaaggctggcagcagggattcactaagagcaatggtgcc----------------------------------------------aagc-ttgcctctt
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30870587 54 -  47401472 taaaaagctggcatgagagattcacaaagagcaattgtgcc----------------------------------------------aagc-ttgcctctt
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20753041 53 +  38779656 tataaagctggcagcagagaggcac-tagagcaattgtgcc----------------------------------------------aagc-ttacctctt
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22702638 47 -  98207768 taagaaa-tggAAGCAGATACGC------AGAGGCTATGCC----------------------------------------------AACC-TTACCTCAT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28790610 96 -  39895921 GGAGAAGCTGTAGGCAGAGG----CAAAGGGCAATGGTAGCTCCAATAGTAACTCTACTCTGGAAATATCCAGATTGTCTATGTCTAAAGC-CTACTTTTT
i canFam3.chr31                I 75 I 210
s dasNov3.JH568778               6688020 49 +   6883506 taaaaacctggcagcacagattctctaag-----tcatgcc----------------------------------------------aacc-taatctctt
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           80707 376 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=346110.000000
s hg38.chr14_GL000009v2_random    173918 32 +    201709 tgacattgttatctgact----gat----aaaGGTA-GGCT
s panTro5.chr9                  41863972 32 + 116767853 tgaccttgttatctgact----gat----aaaggta-ggct
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831544 32 + 205426864 tgacattgttatctgact----gat----aaaGGTA-GGCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          241002 33 +    245036 tgacattgttatctgact----gat----aaaggtagggct
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110694 31 -  86207423 ggacattgttatctgact----gat----aaa-gta-ggCC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204266349 32 - 204787373 tgacattgttatcggact----gat----aaaGGTA-GGCC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165558 32 - 192460366 tgacattgttatcggact----gat----aaaGGTA-GGCC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          185057 32 -  11645122 tgacattgttatcggact----gat----aaaGGTA-GGCC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          170261 32 -   6739814 tgatattgttatcggact----gat----aaaGGTA-GGCC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    60293 32 - 101219884 tgacattgttattggact----gAA----AAAGGTA-GGCC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          182443 32 -    785044 tgacattgttatcggact----gat----aaaGGTA-GGCC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           71506 32 -  10971483 tgacattgttatcagact----gAA----AAAGGTA-GGCC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10929355 28 -  13128814 tGACGTTGTTAT----CT----GAT----AAAGGCA-GGCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657950 32 +  14377064 tgacattgttatctgact----gat----aaaGGTA-GGCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4126329 32 -   9889416 tgacattgttatctgact----gat----aAGGGTA-GGTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30870641 32 -  47401472 tgacattgtgatctgact----gag----aaaatta-ggct
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20753094 32 +  38779656 tgacattgttatgtgact----gaa----aaaagta-ggct
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22702685 36 -  98207768 TGACACTGACATCTGCTCATTAGAG----AAATGCA-GGAT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 11105191 36 +  39895921 AGTGATTCAGACCTGACT----GATAGAAAAAAGTA-GGCT
i canFam3.chr31                I 42 C 0
s dasNov3.JH568778               6688069 33 +   6883506 tggcatt---acctgact----gatcgggaaagtta-tgct
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           80707 376 +   1229009 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=393874.000000
s hg38.chr14_GL000009v2_random    173950 36 +    201709 ATAGCGGTACACAATACA---GATATTTCCA-----------------------GGGTAAAG
s panTro5.chr9                  41864004 36 + 116767853 atagtggtaCACAATACA---GATATTTCCA-----------------------GGGTAAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831576 36 + 205426864 ATAGCGGGACACAATACA---GATATTTCCA-----------------------GGGTAAAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          241035 36 +    245036 atagcgggacacaatACA---GATATTTCCA-----------------------GGGTAAAG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110725 36 -  86207423 ATAGCGGCGCACAATACG---GATATTTCCA-----------------------GGGTAACG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204266381 36 - 204787373 ACGGCAGTACACGATACG---GATATTTCCA-----------------------GGGTAAAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165590 36 - 192460366 ACAGCAGTACACGATACG---GATATTTCCA-----------------------GGGTAAAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          185089 36 -  11645122 ACGGCAGTACACGATACG---GATATTTCCA-----------------------GGGTAAAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          170293 36 -   6739814 ACGGCAGTACACGATACG---GATATTTCCA-----------------------GGGTAAAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    60325 36 - 101219884 ACGGCAGTACACAATACG---GATATTTCCA-----------------------GGGTAAAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          182475 36 -    785044 ACGGCAGTACACGATACG---GATATTTCCA-----------------------GGGTAAAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           71538 36 -  10971483 ACAGCGGTACACAATATG---GATATTTCCA-----------------------GGGTAAAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10929383 36 -  13128814 TTAGCCGTACACAATATG---GATATTTCTA-----------------------GGGCAAAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7657982 36 +  14377064 TTAGCTGTACACGATATG---GATATTTCTA-----------------------GGGCAAAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4126361 36 -   9889416 TTAGCCGTACATGATATG---GATATTTCTA-----------------------GGGCAAAG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30870673 36 -  47401472 ttagatatagACAATATA---GATATTTCCA-----------------------GGGTGAAG
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           81083 36 +   1229009 TTAGATATAGACAATATA---GATATGTCCA-----------------------GGGTGAAG
i eulFla1.LGHW01000695v1       I 376 C 0
s otoGar3.GL873528              20753126 36 +  38779656 ttagatatagacaatctg---catACCTCCT-----------------------GGGTAAAG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22702721 61 -  98207768 -TAGAGAAATGCAGCCTGAGAGACATTTTCACGTAAATATTATTGGGGAATTTCAGGTAAAT
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 11105227 36 +  39895921 TTAGACATAGACAATCTG---GATATTTCCA-----------------------GAGTAGAG
i canFam3.chr31                C 0 I 3
s dasNov3.JH568778               6688102 35 +   6883506 -ttaacataaacagtccg---gatttTTCTA-----------------------GGCTAAGG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulMac1.LGHX01000692v1           76900 3060 +   1212331 I

a score=94419.000000
s hg38.chr14_GL000009v2_random    173986 6 +    201709 TTGTTG
s panTro5.chr9                  41864040 6 + 116767853 CTGTTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831612 6 + 205426864 CTGTTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          241071 6 +    245036 CTGTTG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110761 6 -  86207423 CTGTCG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204266417 6 - 204787373 CTATTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165626 6 - 192460366 CTATTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          185125 6 -  11645122 CTATTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          170329 6 -   6739814 CTATTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    60361 6 - 101219884 CTGTTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          182511 6 -    785044 CTATTG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           71574 6 -  10971483 CTGTTG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10929419 6 -  13128814 CTGTTG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7658018 6 +  14377064 CTGTTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4126397 6 -   9889416 CTGTTG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30870709 6 -  47401472 TTATTG
i micMur3.chr31                C 0 I 394
s eulMac1.LGHX01000692v1           79960 6 +   1212331 TTATTG
i eulMac1.LGHX01000692v1       I 3060 I 12218
s eulFla1.LGHW01000695v1           81119 6 +   1229009 TTATTG
i eulFla1.LGHW01000695v1       C 0 I 8467
s otoGar3.GL873528              20753162 6 +  38779656 TCACTG
i otoGar3.GL873528             C 0 I 3
s mm10.chr16                    22702783 6 -  98207768 TTATTG
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 11105266 6 +  39895921 CTATTG
i canFam3.chr31                I 3 I 1
s dasNov3.JH568778               6688137 6 +   6883506 TTATTG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I

a score=152012.000000
s hg38.chr14_GL000009v2_random    173992 20 +    201709 --------AGCTGCTGTAATTTTCCTTG-
s panTro5.chr9                  41864046 20 + 116767853 --------AGGTGCTGTAATTTTCCTTG-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831618 20 + 205426864 --------AGCTGCTGTAATTTTCCTTG-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          241077 20 +    245036 --------AGCTGCTGTAATTTTCCTTG-
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110767 20 -  86207423 --------AGCTGCTATAACTTTCCTTG-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204266423 20 - 204787373 --------AGCTGCTATAATTTTCCTTT-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165632 20 - 192460366 --------AGCTGCTATAATTTTCCTTT-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          185131 20 -  11645122 --------AGCTGCTATAATTTTCCTTT-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          170335 20 -   6739814 --------AGCTGCTATAATTTTCCTTT-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    60367 20 - 101219884 --------AGCTGCTATAATTTTCCTTT-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          182517 20 -    785044 --------AGCTGCTGTAATTTTCCTTT-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           71580 20 -  10971483 --------AGCTGCTATAATTTTCCTTT-
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10929425 20 -  13128814 --------AGCTGCTGTAATTGTCCTTG-
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7658024 20 +  14377064 --------AGCTGCTGTAATTGTCCTTG-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4126403 20 -   9889416 --------AGCTGCTGTAATTGTCCTTG-
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20753171 13 +  38779656 --------AGTTA--GTGATTTC------
i otoGar3.GL873528             I 3 C 0
s mm10.chr16                    22702789 20 -  98207768 --------GAGAGCTACAGATTTCCTGG-
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 11105273 17 +  39895921 -----------AGCTACCATTGCCCTTT-
i canFam3.chr31                I 1 n 1
s dasNov3.JH568778               6688143 29 +   6883506 TATTATTCCGGTGTCAAAATGGCCATTTA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30870715 394 -  47401472 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=2278494.000000
s hg38.chr14_GL000009v2_random    174012 260 +    201709 CCTCTTCACTATCT-------------TCTCCTATAGTTGACTCCCAAGGAAAAGATAGTTGACTTTTAATCT----AGAAATGTATGTTAATTGGCAAAAACAAAAAAATGAAACCATTAAATATCCTTTAGGCTTCTCTCTGC--------TCAG-TTATTAGATCAT-ATGAATGTTCCCTT---AGGAAACACAGAAGGCC-----C---------ACACTAT--------TATAGAG--------AAAAATTTCTTACATTCTCTGCTGTTTAATGCTCTTCA----AAAGACTTACCAT---ACTTCACTAATTTGATTAC
s panTro5.chr9                  41864066 260 + 116767853 CCTCTTCACTATCT-------------TCTCCTATAGTTGACTCCCAAGGAAAAGATAGTTGACTTTTAATCT----AGAAATGTATGTTAATTGGCAAAAACAAACAAATGAAACCATAAACTATCCTTTAGGCTTCTCTCTGC--------TCAG-TTATTAGGTCAT-ATGAATGTGTCCTT---AGGAAACACAGAAGGCC-----C---------ACACTAT--------TATAGAG--------ACAAATTTCTTACATTCTCTGCTGTTTAATGCTCTTCA----AAAGACTTACCAT---ACTTCACTAATTTGATTAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831638 259 + 205426864 CCTCTTTGCTATCT-------------TCTCCTATAGTCAACTCCTGAGGAAAGGATAGTTGACTTTTAATCT----AGAAATGTATGTTAATTAGCAAAAACAAACAAATGAAACCATAAACTGTCCTTTAGGCTTCTCTCTGC--------TCAG-TTATTAGATCAT-ATGAATGTGCCCTT---AGGAAACACAGAAGGCC-----C---------ACACTAT--------TATAGAG--------ACAAATTTCTTACATTCTCTGCTGTTTAATGCTCTTCA----AAAGACTTA-CAT---ACTTCAGCAATTTGATTGC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          241097 259 +    245036 CCTCTTTGCTATCT-------------TCTCCTGTAGTCAACTCCTGAGGAAAGGATAGTTGACTTTTAATCT----AGAAATGTATGTTAATTAGCAAAAACAAACAAATGAAACCATAAACTGTCCTTTAGGCTTCTCTCTGC--------TCAG-TTATTAGATCAT-ATGAATGTGCCCTT---AGGAAACACAGAAGGCC-----C---------ACACTAT--------TATAGAG--------ACAAATTTCTTACATTCTCTGCTGTTTAATGCTCTTCA----AAAGACTTA-CAT---ACTTCAGCAATTTGATTGC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42110787 251 -  86207423 CCTCTTTACAATCT-------------TCTCCTATAGTCGACTCCCAAGAAAAAGATAGTTGACTTTTAATCC----AGAAATGTATGTTAATTGGCAAAAACAAACAAATGAAGCCATAAACTATCCTTTAGGCTTCTCTCTGC--------TCAG-TTATTTGATCAT-ATGAATGTGCCCTT---AGGAAACACAGAAGGCC-----C---------ACACTAT--------TATAGAG--------ACAAATTTCTTACATTCTCTGCTGTTTAATGCTCTTCA----AA---------AT---ACTTCACCAATTTGATTGC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204266443 259 - 204787373 CCTCTTCACTAGCT-------------TCTCCTATAGCTGACCCCTGAGGAAAATATAGTTGACATTTAATCT----AGAAATGTATGTTAATTGGCAAAAACAAACAAATGAAACCATAAACTATCCTTTAGGCTTCTCTATGC--------TTAG-TTATTAGATCAT-ACGAATGTGCCCTT---AGGAAACACGGAAGTCC-----C---------ACACTAT--------TATAGA---------ACAGATTTCTTACATTCTCTGCTGTTTAATGCTCTTCA----AAAGACTTACGAT---ACTTCACTGGTTTGATTAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165652 259 - 192460366 CCTCTTCACTAGCT-------------TCTCCTATAGCTGACCCCTGAGGAAAATATAGTTGACATTTAATCT----AGAAATGTATGTTAATTGGCAAAAACAAACAAATGAAACCATAAACTATCCTTTAGGCTTCTCTATGC--------TCAG-TTATTAGATCAT-ACGAATGTGCCCTT---AGGAAACACGGAAGTCC-----C---------ACACTAT--------TATAGA---------ACAGATTTCTTACATTCTCTGCTGTTTAATGCTCTTCA----AAAGACTTACGAT---ACTTCACTGGTTTGATTAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          185151 259 -  11645122 CCTCTTCACTAGCT-------------TCTCCTATAGCTGACCCCTGAGGAAAATATAGTTGACATTTAATCT----AGAAATGTATGTTAATTGGCAAAAACAAACAAATGAAACCATAAACTATCCTTTAGGCTTCTCTATGC--------TCAG-TTATTAGATCAT-ACGAATGTGCCCTT---AGGAAACACGGAAGTCC-----C---------ACACTAT--------TATAGA---------ACAGATTTCTTACATTCTCTGCTGTTTAATGCTCTTCA----AAAGACTTACGAT---ACGTCACTGGTTTGATTAC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          170355 259 -   6739814 CCTCTTCACTAGCT-------------TCTCCTATAGCTGACCCCTGAGGAAAATATAGTTGACTTTTAATCT----AGAAATGTATGTTAATTGGCAAAAACAAACAAATGAAACCATAAACTATCCTTTAGGCTTCTCTCTGC--------TCAG-TTATGAGATCAT-ACGAATGTGCCCTT---AGGAAACACAGAAGTCC-----C---------ACACTAT--------TATAGA---------ACAGATTTCTTACGTTCTCTGCTGTTTAATGCTCTTCA----AAAGACTTACGAT---ACTTCACTGGTTTGATTAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    60387 259 - 101219884 CCTCTTCACTAGCT-------------TCCCCTATCGCTGACCTCTGAGGAAAATATAGTTGACTTTTAATCT----AGAAATGTATGTTAATTGGCAAAAATAAACAAATGAAACCATAAACTATCCTTTAGGCTTCTCTCTGC--------TCAG-TTATTAGATCAT-ACGAGTGTGCCCTT---AGGAAACACAGAAGTCC-----C---------ACACTAT--------TATAGA---------ACAAATTTCTTACATTCTCTGCTGTTTAATGCTCTTCA----AAAGACTTATGAT---ACTTCACTGGTTTGATTAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          182537 259 -    785044 CCTCTTCACTGGCT-------------TCTCCTATAGCTGACCCCTGAGGAAAATATAGTTGACTTTTAATCT----AGAAATGTATGTTAATTGGCAAAAACAAACAAATGAAACCATAAACTATCCTTTAGGCTTCTCTCTGC--------TCAG-TTATGAGATCAT-ACGAATGTGCCCTT---AGGAAACACAGAAGTCC-----C---------ACACTAT--------TATAGG---------ACAAATTTCTTACATTCTCTGCTGTTTAATGCTCTTCA----AAAGACTTACGAT---ACTTCACTGGTTTGATTAC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           71600 254 -  10971483 CCTCTTCAGTAGCT-------------TCTCCTATAGCTGACCCCTGAGGAAAATATAGTTGACTTTTAATCT----AGAAATGTATGTTAATTGACAAAAACAAACAAATGAAACCATAAACTATCCTTTAGGCTTCTCTCTGC--------TCAG-TTAGTAGATCAT-ATGAGTGAGCCCTT---AGGAAACA--GAAGGCC-----C---------ACACTAT--------TACAGG---------ACAAAT---TTACCTTCTCTGCTGTTTAATGCTCTTCA----AAAGACTTACGAC---ACTTCACTGGTTTGATTAC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10929445 260 -  13128814 CCTCTTCCCTAGCT-------------TCTCCTAGAGATGACTCCCAAGGAAGAGATAGTTGCCCTTTAATCC----AGAAATTTATGTTAATTGACAAAAACAAACAAATGAAACCATAAGCTATCCTTTAGGCTTCTCTCTTC--------TCAG-TTATTGGATCAT-GTGAATGTGCCCTT---AGGAAATACAGAAGGCC-----C---------ACACTAT--------TAAAGAG--------ACAAATTTCTTACATTCTCTGCTGTTTAATTCTCTTCA----AAAGACTTAACAT---ACTTCACCAATTTGACTGC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7658044 260 +  14377064 CCTCTTCCCTAGCT-------------TCTCCTATAGATGACTCCCAAGGAAGAGATAGTTGACCTTTAATCC----AGAAATTTACGTTAATTGGCAAAAACAGACAAACGAAACCATAAGCTATCCCTTACGCTTCTCTCTTC--------TCAG-TTATTGGATCAT-GTGAATGTGCCCTT---AGGAAATACAGAAGGCC-----C---------ACACTAT--------TAAAGAG--------ACAAATCTCTTACATTCTTTGCTGTTTAATGCTCTTCA----AAAGACTTAACAT---ACTTCACCAATTTGACTGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4126423 260 -   9889416 CCTCTTCCCTAGCT-------------TCTCCTATAGATGACTCCCAAGGAAGAGATAGTTGACCTTTAATCC----AGAAATTTATGTTAATTGGCAAAAACAAACAAACAAAACTGTAAACTATCCTTTAGACTTCTCTCTTC--------TCAG-TTATTGGATCAT-GTGAATGTGCCCTT---AGGAAATACAGAAGGCC-----C---------ACACTAT--------TATAGAG--------ACAAATTTCTTACATTCTCTGCTGTTTAATGCTCTTCA----AAAGACTTAACAT---ACTTCACCAATTTGACTGC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20753184 135 +  38779656 ----------AGCT-------------TCTTCTACAGCCAGTATCTGAG-----------------------------------------------CAAATACA---------------------------------------------------------------------GAATG-GCC-----------ACACTG----CT-----G---------ACGCTAC--------TATAGAG--------ACAAATTTCTTATACTTTGTGCTGTTTGATGCTATTCA----ATAGACCTATTAT---TTTGCTTCAGTTAGACTGT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22702809 267 -  98207768 CTTCTTCCACAATC-------------TCTCTTTCCTCAGA-----GAGAGAAAAAAATCTGGCCTTAATTCC----AGATTTAATTGTTA----GCAAAACCAAACAAATA----TATAAATGACCCTTGAGGCTGCTGTCTCC--------TTGG-TTACTAGGTCATAACAAAGATGCCCTTAAGAGGAAATATAGAAGGATGCTGGG---------ACAATGT--------TGGAGGGAAATCTTTACAAAA-TCTGGTATTCTTTCTTATTTATCATTCTATAGTGGAATGGTTTTCTGA---TTTTTACTACTTAGACTGc
i mm10.chr16                   C 0 I 1166
s canFam3.chr31                 28790916 286 -  39895921 ctgcttctccctctgcctgtgtctctgtctctcactgtgtatctctcatgaataaataaataa-----aatcttcaaaaaaaaATACATAAAT--ACTAAAATA---AAATAAAACCATACACTA-CCTTTAGACTGCCATATGCGTAGTTAATTAA-TTATTAGATCAT-ACGA-TGTGCCTCTAACAAGGAGCACAGAAAGCC-----CATACTGCAGACACTAT--------TAAAGAG--------ATGACTTTCTTCCTTTCTCCTTTGTTTAATGTCCTTCA----GAAGATCTGTTATC--ATCTCAGTAATTTGACTGC
i canFam3.chr31                I 210 C 0
s dasNov3.JH568778               6688172 220 +   6883506 TCTCTGTCCACAGC-------------TTTTGTAGGGTCATTTCCTGTGGGATGGACCATTAGCCTTTGTGCA----AGA-------GTTCATTGGCAATAGC-------------------------------------TCTGC--------TCAGTTTATGAAATCAG-ATCAAT-----------AAGAAATAGAGAAGACC-----C---------ACACTACAGACTTGATAAAGAG--------GCAGCATTCTTACATCCTCTTCTGTTTCTTCCTCTTTA----AAAGAGCTGTTATCTTACctcaccaattagactgt
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30870715 394 -  47401472 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=777671.000000
s hg38.chr14_GL000009v2_random    174272  82 +    201709 CAACTACTTGAACACAGGGA--------------CCAATGTGCTTATTAAA-AATTTTGCATATTATGAGGGC---ATTAAC-TTTTAAGTATTCGATTGT---
s panTro5.chr9                  41864326  80 + 116767853 CAACTACTTGAACACAGGGA--------------CCAATGTGCTTAATAAA-AATTTTGCATATTATGAGGGC---ATTAAC-TTTTAAGTATTCGATT-----
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831897  82 + 205426864 CAACTACTTGAACACAGGGA--------------CCAAAGTACTTATTAAA-AATTTTGCATATTATTAGGGC---ATTAAC-TTTTAAGTATTCGATTGT---
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          241356  82 +    245036 CAACTACTTGAACACAGGGA--------------CCAAAGTACTTACTAAA-AATTTTGCATATTATTAGGGC---ATTAAC-TTTTAAGTATTCGATTGT---
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42111038  73 -  86207423 CAACTACGTGAACACAGGGA----------------------CTTATTAAA-AATTTTGCATATTATGAGGGC---ATTAAC--TTTAAATATTCGATTGT---
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204266702  82 - 204787373 CAACTACTTGAACACAGGGA--------------CCAAAGTACTTATTAAA-AATTGTGCATATCATGAGGGC---ATTAAT-GTTTGAGTATTCGATTGT---
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165911  82 - 192460366 CAACTACTTGAACACAGGGA--------------CCAAAGTACTCATTAAA-AATTGTGCATATCATGAGGGC---ATTAAT-GTTTGAGTATTCGATTGT---
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          185410  82 -  11645122 CAACTACTTGAACACAGGGA--------------CCAAAGTACTTATTAAA-AATTGTGCATATCATGAGGGC---ATTAAT-GTTTGAGTATTCGATTGT---
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          170614  82 -   6739814 CAACTACTTGAACACAGGGA--------------CCAAAGTACTTATTAAA-AATTGTGCATATCATGAGGGC---ATTAAC-GTTTGAGTATTCGATTGT---
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    60646  82 - 101219884 CAACTACTTGAACACAGGCA--------------CCAAAGTACTTATTAAA-AATTGTGCATATCATGAGGGC---ATTAAC-GTTTAAGGATTCGATTGT---
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          182796  82 -    785044 CAACTACTTGAACACAGGGA--------------CCAAAATACTTATTAAA-AATTGTGCATATCATGAGGGC---ATTAAC-GTTTGAGTATTCGATTGT---
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           71854  82 -  10971483 CGACTACTTGAACACAGGGA--------------CCAAAGTACTTATTAAA-AATTGTGCATATCATGAGGGC---ATTAAC-TTTTAAGTATTCAATTGT---
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10929705  82 -  13128814 CAACTATTTGAACACAGGGA--------------CCAAAGCACTTATTAAA-ACTTCTGGATATTATGGGGGC---ATTAAC-TTTTAAGTATTTGACTGT---
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7658304  82 +  14377064 CAACTATTTGAACACAGGGA--------------CCAAAGTACTTACTAAA-ACTTTTGGATATTATGGGGGC---ATTAAC-TTTTAAGTATTTGACTGT---
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4126683  78 -   9889416 CAACTATTTGAACACAGGGA--------------CCAAAGTACTTATTAAA-ACTTTTGCATATTATGGGGGC---ATTAAC-TTTTAAGTATT----TGT---
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20753319  96 +  38779656 CAACTATTTGATAATTGGGATCATATTTTATGTGTCAAAGTACTTATCAAA-TATCTTGCACATTATGGGGAC---ATTAAT-TTTTAATTACTAGATTGT---
i otoGar3.GL873528             C 0 I 3
s canFam3.chr31                 28791202  97 -  39895921 CAATTACTTGAAAACAGGGACTATATTTTTTGTCTCAAGGTACTTGTCAAG-TGTTTTTCACATTATGGGGGC---TGTAGCTTTTTAATTATTCAATTGT---
i canFam3.chr31                C 0 I 7
s dasNov3.JH568778               6688392 103 +   6883506 aaactatttgaaaacaggaaccatattttCTGTCTCAAGGTACTGAACAAACTGTCTTTTACATTTTAGGGGCTTTATTAAT-TTTTGACTGTTTGTGAGTTAA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30870715 394 -  47401472 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=2283971.000000
s hg38.chr14_GL000009v2_random    174354 206 +    201709 TAAGACAATGCATATTATTATAAACCATAGAAGGCACACTTAT----TACCTCCTTAAGAACCAGT-CTCTATTTCTCTGGTTCATAGATCTCCAAGGTTATAGAGGGATTGGACATTTGTG-T-CTTCAATTGGCCCTCTTCAGCCCTAGGATAAATAGTGATTAATCTAAGTcaatggttttcggctctgtctgacccaatgcctctactt
s panTro5.chr9                  41864406 205 + 116767853 -AAGACAATGCATATTATTATAAACCATAGAAGGCACACTTAt----tacctccttaagaaccagt-ctctatttctctgattcatagatctccaaggtcatagagggattggacatttgtg-t-cttcaattggccctcttcagccctaggataaatagtgattaatctaagccaatggttttcgggtctgtctgacccaatgcctctactt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77831979 205 + 205426864 TAAGACAATGCATATTATTATAAACCATAGAAGGCATACTTAt----tacctccttaagaaccagt-ctctatttctctggttcatagaactcccaggtcatagagggattggacatttgtg-t-cttcatttggccctcttcagccctaggataaatagtgattaatctaagccaatgg-tttcagctctgtctgacccaatgcctctactt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          241438 205 +    245036 TAAGACAATGCATATTATTATAAACCATAGAAGGCATACTTAt----tacctccttaagaaccagt-ctctatttctctggttcatagaactcccaggtcatagagggattggacatttgtg-t-cttcatttggccctcttcagccctaggataaatagtgattaatctaagccaatgg-tttcagctctgtctgacccaatgcctctactt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42111111 204 -  86207423 TAAGACAATGCATATTATTATAAACCATAGAAGGCACACTTATTACCTACCTCCTTAAGAACCAGT-CTCTATTTCTCTGGTTCATAGAACTCCTAGGTCATAGA------GGACATTTGTG-T-CTTCAATTGGccctcttcagccctaggataaatagtgattaatctaagccaatggttttcagctctgtctgacccaatgcctctactt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204266784 206 - 204787373 TAAGACAATGAATATTATTATGAACtatggaaggcacacttat----tacctccttaagaaccagtcctctatttctctggttcatagaactcccagttcat-gagggattagacatctgtg-t-gttcaattggccctcttcaaccctaggataaagaataattaatctaagccagtggttttcagctctgtctgacccaatgcctctactt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    165993 205 - 192460366 TAAGACAATGAATATTATTATGAACTATGGAAGGCACACTTAT----TACCTCCTTGAGAACCAGT-CTCTATTTCTCTGGTTCATAGAACTCCCAGTTCAT-GAGGGATTAGACATCTGTG-T-GTTCAATTGGCCCTCTTCAACCCTAGGATAAAGAATAATTAATCTAAGCcagtggttttcagctctgtctgacccaatgcctctactt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          185492 205 -  11645122 TAAGACAATGAATATTATTATGAACTATGGAAGGCACACTTAt----tacctccttgagaaccagt-ctctatttctctggttcatagaactcccagttcat-gagggattagacatctgtg-t-gttcaattggccctcttcaaccctaggataaagaataattaatctaagccagtggttttcagctctgtctgacccaatgcctctactt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          170696 206 -   6739814 TAAGACAATGAATATTATTATGAACtatggaaggcacacttat----tacctccttaagaaccagt-ctctatttctctggttcatagaactcccagttcagagagggattagacatctgtg-t-cttcagttggccctcttcaaccctaggataaagaataattaatctaagccagtggttttcagctctgtctgacccaatgcctctattt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    60728 206 - 101219884 TAAGACAATGAATATTATTATGAACtgtggaaggcacacttat----tgcctccttaagaaccagt-ctctatttctctggttcatagaactcccagttcatagagggattggacatctgtg-t-cttcaattggccctcttcaaccctaggataaagaataattaatctaagccagtggttttcagctctgtctgacccaatgcctctactt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          182878 206 -    785044 TAAGACAATGAATATTATTATGAACtatggaaggcacacttat----tacctccttaagaaccagt-ctctatttctctggttcatagaactcccagttcatagagggattagacatctgtg-t-cttcagttggccctcttcaatcctaggataaagaataattaatctaagccagtggttttcagctctgtctgacccaatgcctctactt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           71936 199 -  10971483 TAAGACAATGAATATTATTATGAACTATGGAAGGCACACTTAT----TACCTCCTTAAGAACCAGT-CTCTATTTCTCTGGTTC------TTCCCAGTTCATAGAGGGATTGGACCTCTGTG-T-CTTCAGCTGGCCCTCTTCAA-CCTAGGATAAAGAATAATTAATCTAAGCcagtggttttcagctctgtctgacccaatgcctctactt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10929787 202 -  13128814 TAAGATAGCACATAGTATTATATACCATAGAAGGCACACTTAt----tacctacttaagaaccagt-ctctatttctctggttcatagaattcctacttcatacagggattggacatctgtg-t-cttcagatggccctcttcagccct-gattagatagtgattaatctaagccaatGACATTCATCTCTGTCTGA---AATACCTCTACTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7658386 202 +  14377064 TAAGACAGCACATAGTATTATATACTATAGAAGGCACACTTAt----tacctccctaagaaccagt-ctctatttctctggttcatagaattcctacttcatacagggattggacatctgtg-t-cttcagttggccctctttagccct-gattagatagtgattactctaagccaatGGCATTCATCTCTGTCTGA---AATGCCTCTACTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4126761 202 -   9889416 TAAGACAGCACATAGTATTCTATACCATAGAAGGCACACTTAt----tacctccctaagaagcagt-ctctatttctctggttcatagaattcctacttcatacagggattagacatctgtg-t-cttcagttggccctcttcagccct-gattagatagtgattaatctaagccaatggcattcatctctgtctga---aatgcctctactt
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30871109 206 -  47401472 TAAGACAATGCATATTGTTATAAGCCACAGAAGAAACACTTAt----taccttcttaagagccatt-ctctatttctctggttagtagaacttccacttcatataggtattaagcatctgtgtt-cttcaatgggcctgccttaaccttagggtgaatggtga-taatctaagccaatGGTTTTCAGCTCTATCTGACTCAATGCCTCTACTT
i micMur3.chr31                I 394 I 590
s otoGar3.GL873528              20753418 203 +  38779656 TAAGACAGTACATATTGTTATAAGCCAtggaagacacacttat----tacctccctaagagccatt-ttctatttctctggttaatagaaacctcatttcatatagatatttggtgtctgtg---cttcagtggaccagccttaacctgaggacgaatggtcattgatctaagtcaatGGTTTTCAACTCTAACTGACCCAAGGCCTCATG--
i otoGar3.GL873528             I 3 C 0
s canFam3.chr31                 28791306 204 -  39895921 TAAGACAATGCATAATGTTATAAATCAtagaagacacacttgt----tacttacatgaga--catt-ctcaatttttcaggctaatgaaactctcatttcatacaggaattggaca-ctgta-tgcttcaataggccctcctcagccctagaatgaatagtgataaatctaagccaatggttttcagctctatatgacctaaagcctctaaat
i canFam3.chr31                I 7 C 0
s dasNov3.JH568778               6688495 207 +   6883506 TAAAACAATGCATAGTGTCACAAACTGCAGAAGGCATACTTGT----TACCCACTGAAGAGCTATT-TTCTATTTTTCTGCAAAATAGAGCTGATATTTCATGAAGGTTTGGGGCACGAATG-TCCTTCAATGGGCATCCCTCAGCCTTAGAATGAATGTTGATTAATCTCAGCcagtagttctcaaatttattgaaactagtacctctgctt
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=6344420.000000
s hg38.chr14_GL000009v2_random    174560 671 +    201709  
s panTro5.chr9                  41864611 673 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77832184 673 + 205426864  
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          241643 673 +    245036  
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42111315 670 -  86207423  
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204266990 666 - 204787373  
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    166198 666 - 192460366  
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          185697 666 -  11645122  
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          170902 666 -   6739814  
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    60934 669 - 101219884  
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          183084 667 -    785044  
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           72135 695 -  10971483  
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10929989 673 -  13128814  
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7658588 676 +  14377064  
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4126963 684 -   9889416  
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20753621 623 +  38779656  
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28791510 679 -  39895921  
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6688702 689 +   6883506  
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30871315 590 -  47401472 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=389213.000000
s hg38.chr14_GL000009v2_random    175231 33 +    201709 TAGTCTCTTTGGAAATAAACC-----------------------------CATGTTAAATTA
s panTro5.chr9                  41865284 33 + 116767853 TAGTCTCTTTGGAAATAAACC-----------------------------CATGTTAAATTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77832857 33 + 205426864 TAGTCTCTTTGGAAGTAAACC-----------------------------CATGTTAAATTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242316 33 +    245036 TAGTCTCTTTGGAAATAAACC-----------------------------CAGGTTAAATTA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42111985 33 -  86207423 tagtctctttggaaataaacc-----------------------------catgttaaatta
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204267656 33 - 204787373 TAGTCTCTTTGGAAATAAACC-----------------------------CATGTTAAATTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    166864 33 - 192460366 TAGTCTCTTTGGAAATAAACC-----------------------------CATGTTAAATTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186363 33 -  11645122 TAGTCTCTTTGGAAATAAACC-----------------------------CATGTTAAATTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          171568 33 -   6739814 tagtctctttggaaataaacc-----------------------------catgttaaatta
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    61603 33 - 101219884 tagtctctttggaaataaacc-----------------------------catgttaaatta
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          183751 33 -    785044 tagtctccttggaaataaacc-----------------------------catgttaaatta
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           72830 33 -  10971483 tagtctctttggaaataaacc-----------------------------catgtgaaatta
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10930662 33 -  13128814 TAAACTCTTTGAAAATTAACC-----------------------------CATGTTAAATTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7659264 33 +  14377064 TAAACTCTTTGAAAATTAACC-----------------------------CATGTTAAATTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4127647 33 -   9889416 TAAACTCTTTGAAAATTAACC-----------------------------CATGTTAAATTA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30871905 33 -  47401472 TAGTCTCTTTGGAAACAAACC-----------------------------CTTGTTAAATTA
i micMur3.chr31                I 590 C 0
s otoGar3.GL873528              20754244 62 +  38779656 TAATCTCTTTAAAATCAAACCATGGATTTTAATTTGAATATTCTGTTTTTCTTATTAAATCA
i otoGar3.GL873528             C 0 I 130
s canFam3.chr31                 28792189 31 -  39895921 TAGTCT-TTTGTAAATAAACC-----------------------------T-TGTTAAATTA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6689391 33 +   6883506 TAGTCTCTTAGTAAATAACTC-----------------------------CACATTAAATTT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=166913.000000
s hg38.chr14_GL000009v2_random    175264 26 +    201709 TCTTAGTT------------------------------------TGTGTGTGTTCTATTT--TT---
s panTro5.chr9                  41865317 26 + 116767853 TCTTAGTT------------------------------------TGTGTGTGTTCTATTT--TT---
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77832890 26 + 205426864 TCTTAGTT------------------------------------TGGGTGTGTTCTCTTT--TT---
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242349 26 +    245036 TCTTAGTT------------------------------------TGGGTGTGTTCTCTTT--TC---
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112018 26 -  86207423 tcttagtt------------------------------------tgagtgtgttctcttt--tt---
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204267689 26 - 204787373 TCTTAGTT------------------------------------TCAGTGTGTTGTCTTT--GT---
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    166897 26 - 192460366 TCTTAGTT------------------------------------TCAGTGTGTTGTCTTT--GT---
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186396 26 -  11645122 TCTTAGTT------------------------------------TCAGTGTGTTGTCTTT--GT---
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          171601 26 -   6739814 tcttagtt------------------------------------tgagtgtgttgtcttt--gt---
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    61636 26 - 101219884 tcttagtt------------------------------------tgagtgtgttgtcttt--gt---
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          183784 26 -    785044 tcttagtt------------------------------------tgagtgtgttgtcttt--gt---
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           72863 26 -  10971483 ttttagtt------------------------------------tgagtgtgttgtcttt--gt---
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10930695 26 -  13128814 TCTTAGTT------------------------------------TGAGTGTGTTATCTTT--TT---
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7659297 22 +  14377064 TCTTAGTT----------------------------------------TGTGTTATCTTT--TT---
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4127680 26 -   9889416 TCTTAGTT------------------------------------TGAGTGTGTTCTCTTT--TT---
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30871938 23 -  47401472 TTTTCATT------------------------------------TGAATATGCT---TTT--Tt---
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20754436 61 +  38779656 tttacactttgtagatttgacatgtacCCTTGTAAAATACACCATAGGTGTGCT---TTTTATT---
i otoGar3.GL873528             I 130 C 0
s canFam3.chr31                 28792220 22 -  39895921 TCTT----------------------------------------TGAGGATATTTCAttt--tt---
i canFam3.chr31                C 0 I 548
s dasNov3.JH568778               6689424 29 +   6883506 TCATAATT------------------------------------TCCTTTTGGGCTCTGA--ccaat
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=555619.000000
s hg38.chr14_GL000009v2_random    175290 65 +    201709 CCTA------------------------------TTGAGACTCTGAAATGAGTAtctaaat-gaaaaaatctac------cgtcttttctcatatacatagc
s panTro5.chr9                  41865343 65 + 116767853 CCTA------------------------------TTGAGACTCTGAAATGAGTAtctaaat-gaaaaaatctac------cgtcttttctcatatacatagt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77832916 62 + 205426864 CCTA------------------------------TTGAGACTGTGAAATGAGTAtctaaat-gaaaaaatctac------catcttttctcatgtacat---
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242375 62 +    245036 TCTA------------------------------TTGAGACTGTGAAATGAGTAtctaaat-gaaaaaatctac------catcttttctcatgtacat---
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112044 65 -  86207423 ccta------------------------------ttgagactctgaAATGAGTAtctaaac-gaaaaattctac------catcttttctcatgtacatagt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204267715 64 - 204787373 CCTA------------------------------TTGAGACTCTGAAATGAGTATCTATAT--GAAAAATCtac------catcttttctcatgtacatagt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    166923 64 - 192460366 CCTA------------------------------TTGAGACTCTGAAATGAGTATCTATAT--GAAAAATCtac------catcttttctcatgtacatagt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186422 64 -  11645122 CCTA------------------------------TTGAGACTCTGAAATGAGTATCTATAC--GAAAAATCtac------catcttttctcatgtacatagt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          171627 61 -   6739814 ccta------------------------------ttgagactctgaAATGAGTATacg-----aaaaaatctac------catcttttctcatgtacatagt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    61662 65 - 101219884 ccta------------------------------ttgagactctgaAATGAGTATCTATac-gaaaaaatctac------catcttttctcatgtacatagt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          183810 65 -    785044 ccta------------------------------ttgagactctgaAATGAGTATCTATac-gaaaaaatctac------catcttttctcatgtatgtagt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           72889 65 -  10971483 ccta------------------------------ttgagactctgaAATGAGTATCTATac-aaaaaaatctac------cgtcttttctcatgtatatagt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10930721 66 -  13128814 CCTA------------------------------TTGAGACTAAGAAATGAGTAtctaaacaaaaaaaatctac------catcttttctcatgtacataat
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7659319 65 +  14377064 CCTA------------------------------TTGAGACTATGAAATGAGTAtctaaac-aaaaaaatctac------catcttttctcatgaacataat
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4127706 65 -   9889416 CCTA------------------------------TTGAGACTATGAAATGAGTAtctaaat-gaaaaaatctac------catcttttctcatgtacataat
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30871961 49 -  47401472 cctg------------------------------ttgagactcta-----------------aacaaaatctac------tatctttgctcatggacataat
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20754497 79 +  38779656 CCTGAGCAGACTGACAGGTATTAATATTTGCTTTTGGAAAATATA-----------------TAaaaacactac------catctttcctcatgtatataat
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6689453 71 +   6883506 acag------------------------------tgaataatcattaataagtatccaaag-aaagtaaatgaccatcttcatctttcttcgtatgtataat
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e nasLar1.chrUn_JMHX01039492v1      1317 181 +      1317 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I

a score=45864.000000
s hg38.chr14_GL000009v2_random    175355 3 +    201709 agt
s panTro5.chr9                  41865408 3 + 116767853 agt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77832978 3 + 205426864 agt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242437 3 +    245036 agt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112109 3 -  86207423 agt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204267779 3 - 204787373 agt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    166987 3 - 192460366 agt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186486 3 -  11645122 agt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          171688 3 -   6739814 agt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    61727 3 - 101219884 agt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          183875 3 -    785044 agt
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    149368 3 + 181502896 agt
i nasLar1.chr2                 I 13542 I 571
s colAng1.NW_012123820v1           72954 3 -  10971483 agt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10930787 3 -  13128814 aat
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7659384 3 +  14377064 agt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4127771 3 -   9889416 agt
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30872010 3 -  47401472 agt
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20754576 3 +  38779656 agt
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6689524 3 +   6883506 agt
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I

a score=558674.000000
s hg38.chr14_GL000009v2_random    175358 46 +    201709 ttcatt------cttgcaaaattcatggcatattaaaaccatgcaaaagtac
s panTro5.chr9                  41865411 46 + 116767853 ttcatt------cttgcaaaattcatggcatattaaaaccatgcaaaagtac
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77832981 46 + 205426864 ttcatt------cctgcaaaattcatggcatattaaaaccatgcaaaagtac
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242440 46 +    245036 ttcatt------cctgcaaaattcatggcgtattaaaaccatgcaaaagtac
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112112 46 -  86207423 ttcatt------cctgcaaaattcatggcacattaaaaccatgcaaaagtac
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204267782 46 - 204787373 ttcatt------cctggaaaattcatggcatattaaaaccatgcaaaagtac
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    166990 46 - 192460366 ttcatt------cctggaaaattcatggcatattaaaaccacgcaaaagtac
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186489 46 -  11645122 ttcatt------cctggaaaattcatgccatattaaaaccatgcaaaagtac
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          171691 52 -   6739814 ttcattcattcacatagaaaattcatggcatattaaaaccatgcaaaagtac
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    61730 46 - 101219884 ttcatt------cctggaaaattcatggcatattaaaaccatgaaaaagtac
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          183878 46 -    785044 ttcatt------cctggaaaattcatggcatattaaaaccatgcaaaagtac
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           72957 46 -  10971483 ttcatt------cctggaaaattcatggcatattaaaaccatgcaaaagtac
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10930790 46 -  13128814 ttcatt------tctggaaaatttatggcatattacaaccatgcaaaaGTAC
i saiBol1.JH378168             C 0 I 18
s cebCap1.NW_016107322v1         7659387 46 +  14377064 ttcatt------tctggaaaatttatggcatattaaaaccatgcaaaagtac
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4127774 46 -   9889416 ttcatt------tctggaaaatttatggcatattaaaactatgcgaaagtac
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30872013 46 -  47401472 ttcatg------cctggaaaattcatggtatattaaaaccatgcaaaagtac
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20754579 46 +  38779656 ttcatg------cctggaaaattcatgttatgttaaaaccatgcaaaagtac
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6689527 46 +   6883506 ttaatt------tctggaaaattcagggtatgttaaagccatgcaaaaatat
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e nasLar1.chr2                    149371 571 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I

a score=105867.000000
s hg38.chr14_GL000009v2_random    175404 10 +    201709 ttgacactta
s panTro5.chr9                  41865457 10 + 116767853 ttggcactta
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833027 10 + 205426864 ttggcactta
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242486 10 +    245036 ttggcactta
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112158 10 -  86207423 ttggcactta
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204267828 10 - 204787373 ttggcactta
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167036 10 - 192460366 ttggcactta
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186535 10 -  11645122 ttggcactta
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          171743 10 -   6739814 ttggcactta
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    61776 10 - 101219884 ttggcactta
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          183924 10 -    785044 ttggcactta
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           73003 10 -  10971483 ttgacactta
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7659433 10 +  14377064 ttcgcagtta
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4127820 10 -   9889416 ttggcattta
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30872059 10 -  47401472 ttgacactta
i micMur3.chr31                C 0 I 45
s otoGar3.GL873528              20754625 10 +  38779656 ttgacaccta
i otoGar3.GL873528             C 0 I 9
s dasNov3.JH568778               6689573 10 +   6883506 tttgcattta
i dasNov3.JH568778             C 0 I 10
e mm10.chr16                    22703076 1166 -  98207768 I
e nasLar1.chr2                    149371 571 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=282414.000000
s hg38.chr14_GL000009v2_random    175414 34 +    201709 ggcagttacatttgggattgtataattaaacaga
s panTro5.chr9                  41865467 34 + 116767853 ggcagttacatttgggattgtataattaaacaaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833037 34 + 205426864 ggcagttacatttgggtttgtataattaaacaaa
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242496 34 +    245036 ggcagttacatttgggtttgtataattaaacaaa
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112168 34 -  86207423 ggcagttacatttcggtttgtgtaattaaacgaa
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204267838 34 - 204787373 ggcagttacatttgggtttgtataattaaacaaa
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167046 34 - 192460366 cgcagttacatttgggtttgtataattaaacaaa
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186545 34 -  11645122 ggcagttacatttgggtttgtataattaaacaaa
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          171753 34 -   6739814 ggcagttacatttgggtttgtataattaaacaaa
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    61786 34 - 101219884 ggcagttacatttgggtttgtataattaaacaaa
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          183934 34 -    785044 ggcagttacatttgggtttgtataattaaacaaa
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           73013 34 -  10971483 ggcagttacatttgggtttgtataattaaacaaa
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7659443 34 +  14377064 ggcagttacatttgggtttacataattaaacaaa
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4127830 34 -   9889416 ggcagttacatttgggtttacataattaaacaaa
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20754644 34 +  38779656 tgcagttagagctgtgttcaaatacttgtttaaa
i otoGar3.GL873528             I 9 I 1
s dasNov3.JH568778               6689593 33 +   6883506 ggtattagattttggtttcagatcattgaaaaa-
i dasNov3.JH568778             I 10 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872069 45 -  47401472 I
e nasLar1.chr2                    149371 571 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=689750.000000
s hg38.chr14_GL000009v2_random    175448 72 +    201709 gcaggttattcaccttcattacattagaaagtcattcaggacatacagcaatccttaattaggagcggctat
s panTro5.chr9                  41865501 72 + 116767853 gcaggttattcatcttcattacattagaaagtcattcaggacatacagcaatccttaattagtcgcggctat
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833071 72 + 205426864 gcaggttattcaccttcatTACGTTAGAAAGTCATTCAGGACATATAGCAATCCTTGATTAGGAGCGGCTAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242530 72 +    245036 gcaggttattcaccttcattacgttagaaagtcattcagcacatatagcaatccttgattaggagcggctat
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112202 72 -  86207423 gcaggttattcaccttcattacgttagaaagtcattcaggacatatagcaatccttgattaggagcggttat
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204267872 72 - 204787373 atgggttattcaccttcattacattagaaagtcattcaggacatacagcaatccttgattaggagtggttat
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167080 72 - 192460366 atgggttattcaccttcattacgttagaaagtcattcaggacatacagcaatccttgattagcagtggttat
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186579 72 -  11645122 atgggttattcaccttcattacgttagaaagtcattcaggacatacagcaatccttgattaggagtggttat
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          171787 72 -   6739814 atgggttattcaccttcatTACGTTAGAAAGTCATTCAGGACATACAGCAATCCTTGATTAGGAGTGGTTAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    61820 72 - 101219884 aagggttattcaccttcattacgttagaaagtcattcaggacatacagcaatccttgattaggagtggttat
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          183968 72 -    785044 gtgggttattcaccttcattacgttagaaagtcattcaggacatacagcaatccttgattaggagtggttat
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           73047 72 -  10971483 acaggttattcaccttcattacgttagaaagtcattcaggacatacagcaatccttgattaggagtggttac
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7659477 70 +  14377064 acacgttattcaccttcatTACGTTAG--AGTCATTCAGGACAAATAGCAGTCCTTGATCAGGAGAGGTTAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4127864 70 -   9889416 acaggttattcaccttcatTATGTTAG--AGTCATTCAGGACATATAGCAGTCCTTGATTAGGAGAGGTTAT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30872114 72 -  47401472 gcaggttattcaccttcattatattagaaagtctttcaggacacatggcaatcctttattgggaatggtaat
i micMur3.chr31                I 45 I 56
s otoGar3.GL873528              20754679 71 +  38779656 gcaagttattcatctTCTTTACATAAGGAAGTCTTG-ATGACATGTGGCAGTCTTTTACTGGGAATGGTTAT
i otoGar3.GL873528             I 1 I 1
s dasNov3.JH568778               6689626 72 +   6883506 tcagattgtttgccttcatgacctcaaaaagtctttcatgacatctgactatgctttattgggaaggattat
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e nasLar1.chr2                    149371 571 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=431055.000000
s hg38.chr14_GL000009v2_random    175520 56 +    201709 -cccatgttactggacatatggcatccctgTTTTCCAATCCTTAAAGTTTTTCCTTA
s panTro5.chr9                  41865573 56 + 116767853 -cccatgttactggacatacggcatccctgTTTTCCAATCCTTAAAGTTTTTCCTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833143 56 + 205426864 -CCCATGTTACTGGACATTTGGCATCTCTGTTTTCCAATTCTGAAAGTTCTTCCTTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242602 56 +    245036 -cccatgttactggacatttgacatctctgTTTTCCAATCCTGAAAGTTCTTCCTTA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112274 43 -  86207423 -cccatgttactggacatttggcatccctgTTTTCCAA-------------TCCTTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204267944 56 - 204787373 -cccatgttactggacatttggcagccctgTTTTCCAGTCCTTAAAGTTCTTCCTCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167152 56 - 192460366 -cccatgttactggacatttggcagccctgTTTTCCAGTCCTTAAAGTTCTTCCTCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186651 56 -  11645122 -cccatgttactggacatttggcagccctgTTTTCCAGTCCTTAAAGTTCTTCCTCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          171859 56 -   6739814 -CCCATTTTACTGGACATTTGGCAGCCCTGTTTTCCAATCCTTAAAGTTCTTCCTCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    61892 56 - 101219884 -cccatgttactggacatttggcagccctgTTTTCCAATCCTTAAAGTTCTTCCTCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          184040 56 -    785044 -cccatgttactggacatttggcagccctgTTCTCCAATCCTTAAAGTTCTTCCTCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           73119 56 -  10971483 -cccatgTTACTGGACATTTGGCAGCCCTGTTTTCCGATTCTTAAAGTTCTTCCTCA
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7659547 43 +  14377064 -CCTATTTTACAGGACA-------------TTTTCAAATCCTTAAAGTTCTTCCTCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4127934 56 -   9889416 -CCCATTTTACAGGACATTTGGCATCTCTGTTTTCAAATCCTTAAAGTTCTTCCTCA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20754751 56 +  38779656 -CCCAGGCTGCAGGACATTTGACTTGACTATTTGTCAATGCTTAAAATTCTTCCCCA
i otoGar3.GL873528             I 1 C 0
s dasNov3.JH568778               6689698 57 +   6883506 ccctacttttcaagatatttaggatctctggtatgtactcattaaaGTTCTTCCTCA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872186 56 -  47401472 I
e nasLar1.chr2                    149371 571 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=1715094.000000
s hg38.chr14_GL000009v2_random    175576 199 +    201709 AAGTTCCAAAATGCCGTCACTTATTATTTCCTGCCATTGGATTTTGTCACATGAAGTTGTAAGGC-TGGGA-ATGCCATAGCCATCTTGAAAACATAGGTAGAAAGATAAGAGAATCACAAAGAAGTGGATCATGTTGAATTAACTAAGCATTGATACCATCTATTTGTTGTGCGATTTGGTCAAAGTTGCTCCTTG-TTTT
s panTro5.chr9                  41865629 199 + 116767853 AAGTTCCAAAATGCCGTCACTTATTATTTCCTGCCATTGGATTTTGTCACATGAAGTTGTAAGGC-TGGGA-ATGCCATAGCCATATTGAAAACATAGGTAGAAAGATAAGAGAATCATAAAGAAGTGGATCATGTTGAATTAACTAAGCATTGACACCATCTATTTGTTGTGCAATTTGGTAAAAGTTGCTCCTTG-TTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833199 199 + 205426864 AAGTTCCAAAACGCCCTCACTTATTCTTTCCTGCCATTGGATTTTGTCACATTCAGTTGTAAGGC-TGGGA-ATGCCATAGCCATCTTGAAAACATAGCTAGAGAGATAAGAGAATCACAAAGAAGTGGATCATGTTGAATTAACTAACCACTGATACCATCTATTTGTTGTGCGATTTGGTAAAATTTGCTCCTTG-TTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242658 199 +    245036 AAGTTCCAAAATGCCCTCACTTATTCTTTCCTGCCATTGGATTTTGTCACATTCAGTTGTAAGGC-TGGGA-ATGCCATAGCCATCTTGAAAACATAGCTAGAGAGATAAGAGAATCACAAAGAAGTGGATCATGTTGAATTAACTAACCACTGATACCATCTATTTGTTGTGCGATTTGGTAAAATTTGCTCCTTG-TTTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112317 196 -  86207423 AAGTTCCAAAATGCCCTCACTTATTCTTTCCTGCCGTTGGATTTTGTCCCATTAAGCTGTAAGGC-TGGGA-ATGCCATAGCCATCTTGAAAAC--AGGTAGAAAGATAAGAGAATCACAAAGACGTGGATCATGTTGAATTAACTAACCATTGATACCATCTACTTGTTGTGTGATTTGGTAAAATTT-CTCCTTG-TTTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204268000 199 - 204787373 AAGTTCCCAAACATCCTCACTTATCCTTTCCTGCCATGGGATTTTGTCACATTAAGTTGTAAGGC-TGGGA-ATGCCATAGCCATCTTGAAAACATAGGTAGAAAGATAAGAGAATCACAAAGAAGTGGATCATGTTGAGTTAACTAACCATTGATA-CATCTATTTGTTGTCCAATTTGGTAAAAGTTGCTCCTTATTTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167208 198 - 192460366 AAGTTCCCAAACATCCTCACTTATCCTTTCCTGCCATGGGATTTTGTCACATTAAGTTGTAAGGC-TGGGA-ATGCCATAGCCATCTTGAAAACATAGGTAGAAAGATAAGAGAATCACAAAGAAGTGGATCATGTTGAGTTAACTAACCATTGATA-CATCTATTTGTTGTCCAATTTGGTAAAAGTTGCTCCTTA-TTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186707 198 -  11645122 AAGTTCCCAAACATCCTCACTTATCCTTTCCTGCCATGGGATTTTGTCACATTAAGTTGTAAGGC-TGGGA-ATGCCATAGCCATCTTGAAAACATAGGTAGAAAGATAAGAGAATCACAAAGAAGTGGATCATGTTGAGTTAACTAACCATTGATA-CATCTATTTGTTGTCCAATTTGGTAAAAGTTGCTCCTTA-TTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          171915 198 -   6739814 AAGTTCCCAAACATCCTCACTTATCCTTTCCTGCCATGGGATTTTGTCACATTAAGTTGTAAGGC-TGGGA-ATGCCATAGCCATCTTGAAAACATAGGTAGAAAGATAAGAGACTCACAAAGAAGTGGATCATGTTGAGTTAACTAACCATTGATA-CATCTATTTGTTGTGCAATTTGGTAAAAGTTGCTCCTTA-TTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    61948 198 - 101219884 AAGTTCCCAAACATCCTCACTTATCCTTTCCTGCCATGGGATTTTGTCACATTAAGTTGTAAGGC-TGGGA-ATGCCAGAGCCATCTTGAAAACATAGGTAGAAAGATAAGAGAATCACAAAGAAGTGGATCATGTTGAGTTAACTAACCATTGATA-CATCTATTTGTTGTGCAATTTGGTAAAAGTTGCTCCTTG-TTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          184096 198 -    785044 AAGTTCCCAAACATCCTCACTTATCCTTTCCTGCCATGGGATTTTGTCACATTAAGTTGTAAGGC-TGGGA-ATGCCATAGCCATCTTGAAAACATAGGTAGAAAGATAAGAGACTCACAAAGAAGTGGATCATGTTGAGTTAACTAACCATTGATA-CATCTATTTGTTGTGCAATTTGGTAGAAGTTGCTCCTTA-TTTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           73175 185 -  10971483 AAGTTCCCAAACATCCTCACTTATCCTTTCCTGCCGTGGGATTTTGTCACATTAAGTTGTAAGGC-TGGGA-ATGCCATAGCCATCTTGAAAACACAGGTAGAAAGATAAGAGAATCACAAAGAAGTGGATCAT-----GTTAACTAACCATTGACA-CATCTATTTGTTGTGCAATTTGGTAAA--TTGT-------TTTT
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7659590 176 +  14377064 AAGTTCTAAAATTCCCTCACTTATCCTTTCCTGCTATGGGATTTTATCACATTAAGTTGTAAGA--TGGGA-ATACTATACCCATCTTGAAAACATA----------------------AGAGAAGTGGATCATGTTGAATTAACTAACCCTTAATACAATATATTTATTGTGTAATTTGGTAAAAGCTGCTCCTTG-TTTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4127990 177 -   9889416 AAGTTCTAAAATGCCCTCACTTATCCTCTCCTGCTATGGGATTTTATCACATTAAGTTGTAAGGC-TGAGA-ATGCTATACCCATCTTGAAAATGTA----------------------AGAGAAGTGTATCATGTTGAATTAACTAACCCTTAATACGATATATTTATTGTGCAATTTGGTAAAAGCTGCTCCTTG-TTTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30872242 198 -  47401472 AAGTTTTAAAATGGCCCCACGTATGttttcctgccacgggatgttgtcacatgaagttgtaaggc-tgggt-ttgctatagccatcttgaaaacatgGATAGAAAGACAAGACAATAATAGAGAAATGGATCATGTTGAATTAACTAACCCTTG-TACCATCTAATTGTTGTGCAATTTGATAAAAATTGCTCTTTA-TTTT
i micMur3.chr31                I 56 I 5410
s otoGar3.GL873528              20754807 200 +  38779656 AAGTTCTAAAATGTCCTCATTTACCTTTTTCTGCCATGGGATGTTATCAAGTAAAACTATAAAGC-TGGGTAATGCTATAGGCATCTTGAAATTAGGTATAGAAAGACAAAAGAATTACAGAGCAGTGAAGCATGTTGACCTCACTAACTCCCGATACCATCTATTTGTTGTGCAATTTGGCAATATTTGTTCTTTG-TTTT
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6689755 164 +   6883506 ATGTTCTAAAATGCTCCCA-------------GTCATGGGATGCTGTT-TGTGAACTTGGAAGGCTTGGGA-CTGCTCTAATCCTCTTGTAAATATGGGTGGAGTCTCAAGAGGACCACAGTGAAATGGATCATATTG----------------------TTTGCCTGTTGTGCAATTTGATAAAAATTACTTCACC-TTTC
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e nasLar1.chr2                    149371 571 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836  18 -  13128814 I

a score=328463.000000
s hg38.chr14_GL000009v2_random    175775 41 +    201709 TTTCTTCAATTAGTAGACTATTCTGTTACTTGAAGCTAAAA
s panTro5.chr9                  41865828 41 + 116767853 TTTCTTCAATTAGTTGACTATTCTGTTACTTGAAGCTAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833398 41 + 205426864 TTTCTACAATTAGTTGACTATTCTGTTACTTGAAGCTAAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242857 41 +    245036 TTTCTACAATTAGTTGACTATTCTGTTACTTGAAGCTAAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112513 32 -  86207423 ---------TTAGTTGACTATTCTGTTACTCGAAGCTAAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204268199 41 - 204787373 TTTCTACGATTAGTTGACTATTCTGTTGCTTGAAGCTAAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167406 41 - 192460366 TTTCTACGATTAGTTGACTATTCTGTTGCTTGAAGCTAAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186905 41 -  11645122 TTTCTACGATTAGTTGACTATTCTGTTGCTTGAAGCTAAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172113 41 -   6739814 TTTCTACGATTAGTTGACTATTCTGTTGCTTGAAGCTAAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    62146 41 - 101219884 TTTCTACAATTAGTTGACTATTCTGTTGCTTGAAGCTAAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          184294 41 -    785044 TTTCTATGATTAGTTGACTATTCTGTTGCTTGAAGTTAAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           73360 41 -  10971483 TTTCTACAGTTAGTTGACTATTCTGTTGCTTGAAGCTAAAA
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7659766 41 +  14377064 TTTCTACAATTAGTCGACTATTCTGTTACTTAAAGGAAATA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4128167 41 -   9889416 TTTCTACAATTAGTTGACTATTCTGTTACTTAAAAGAAATA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20755007 41 +  38779656 ACTCTAGAATGACTGGACTATTCTGTTACTTCAAAACAAAA
i otoGar3.GL873528             C 0 I 2328
s dasNov3.JH568778               6689919 36 +   6883506 --TCTACTCTTA---AAGTATTTTTTTACTTGAAATCAAAA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    149371 571 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=21267.000000
s hg38.chr14_GL000009v2_random    175816 7 +    201709 --ACTTTtt
s panTro5.chr9                  41865869 7 + 116767853 --ACTTTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833439 7 + 205426864 --ACATttt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242898 7 +    245036 --ACtcttt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112545 7 -  86207423 --ACTTTtt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204268240 7 - 204787373 --ACTTGtt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167447 7 - 192460366 --ACTTGtt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186946 7 -  11645122 --ACTTGtt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172154 7 -   6739814 --ACttttt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    62187 7 - 101219884 --ACTTAtt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          184335 7 -    785044 --ACttttt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           73401 7 -  10971483 --ACttttt
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7659807 6 +  14377064 --ACtttt-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4128208 2 -   9889416 --AC-----
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20757376 4 +  38779656 --ACTT---
i otoGar3.GL873528             I 2328 C 0
s dasNov3.JH568778               6689955 7 +   6883506 TCATTTT--
i dasNov3.JH568778             C 0 I 889
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    149371 571 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=15015.000000
s hg38.chr14_GL000009v2_random    175823 3 +    201709 ttt
s panTro5.chr9                  41865876 3 + 116767853 TTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833446 3 + 205426864 ttt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242905 3 +    245036 ttt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112552 3 -  86207423 ttt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204268247 3 - 204787373 ttt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167454 3 - 192460366 ttt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186953 3 -  11645122 ttt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172161 3 -   6739814 ttt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    62194 3 - 101219884 ttt
i chlSab2.chr22                C 0 I 468
s manLeu1.NW_012099043v1          184342 3 -    785044 ttt
i manLeu1.NW_012099043v1       C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    149371 571 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4128210 0 -   9889416 C
e canFam3.chr31                 28792242 548 -  39895921 I
e otoGar3.GL873528              20757380 0 +  38779656 C
e colAng1.NW_012123820v1           73408 0 -  10971483 C
e dasNov3.JH568778               6689962 889 +   6883506 I
e cebCap1.NW_016107322v1         7659813 0 +  14377064 C
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=84263.000000
s hg38.chr14_GL000009v2_random    175826 43 +    201709 ---tcttttctttctttcttttttattttt----------------g--acagaaccttactct
s panTro5.chr9                  41865879 49 + 116767853 ----Cttttctttctttcttttttcttttt---------tttttttg--acagaaccttactct
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833449 40 + 205426864 ----cttctctttcttcttttttttttt------------------g--acagagtcttactct
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242908 59 +    245036 ---tcttttctttctttctttcttttttttttttttttttttttttg--acagagtcttactct
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112555 43 -  86207423 ----cttttctttctttctttttttttttt---------------tg--acagaatcttactct
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204268250 22 - 204787373 ------------------------cttttt----------------g--acagagtcttactct
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167457 22 - 192460366 ------------------------cttttt----------------g--acagagtcttactct
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186956 22 -  11645122 ------------------------cttttt----------------g--acagagtcttactct
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172164 22 -   6739814 ------------------------cttttt----------------g--acagagtcttactct
i cerAty1.NW_012001605v1       C 0 C 0
s manLeu1.NW_012099043v1          184345 22 -    785044 ------------------------cttttt----------------g--acagagtcttactct
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           73408 28 -  10971483 ------------------ttttttcttttt----------------g--acagagtcttactct
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7659813 32 +  14377064 --------------ttttttttttttttaa----------------g--acagagtctcactct
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4128210 32 -   9889416 --------------ttttttttttttttaa----------------g--acacagtctcactct
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20757380 48 +  38779656 TCATTTTAACTTCATTTAATTTTCATTTTA----------------GGAAAATAACCTTAGTCT
i otoGar3.GL873528             C 0 T 2250
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    149371 571 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e dasNov3.JH568778               6689962 889 +   6883506 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e chlSab2.chr22                    62197 468 - 101219884 I

a score=609592.000000
s hg38.chr14_GL000009v2_random    175869 95 +    201709 gttgcccaggctggagtgcaatggcatgatcttggctcactgcaacctctgcttgcctagttcaagcaattctcacacctcagcctccctagtag
s panTro5.chr9                  41865928 95 + 116767853 gttgcccaggctggagtgcaatggcatgatcttggctcactgcaacctctgcttgcctagttcaagcaattctcacacctcagcctccctagtag
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833489 95 + 205426864 gttgcccaggctggagtgcaatggcatgatcttggctcactgcaacctctgcttgtctggttcaagcaattctcccacctcagcctcccaagtag
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          242967 95 +    245036 gttgcccaggctggagtgcaatggcatgatcttggctcactgcaacctctgcttgtctggttcaagcaattctcccacctcagcctcccaagtag
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112598 95 -  86207423 gttgcccaggctggagtgcaatggcatgatcttggctcactgcaacctctgcttgcctgattcaagcaattctcccacctcagcctcccaagtag
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204268272 93 - 204787373 gttg--caggctgaagtgaaatggcatgatctcggctcactgcaatctctgcttgcctggttcaagcaatcctcccacctcagcctcccaagtag
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167479 93 - 192460366 gttg--caggctgaagtgaaatggcatgatctcggctcactgcaatctctgcttgcctggttcaagcaatcctcccacctcagcctcccaagtag
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          186978 93 -  11645122 gttg--caggctgaagtgaaatggcatgatctcggctcactgcaatctctgcttgcctggttcaagcaatcctcccacctcagcctcccaagtag
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172186 93 -   6739814 gttg--caggctgaagtgaaatggcatgatctcggctcactgcaatctctgcttgcctgattcaagcaatcctcccacctcagcctcccaagtag
i cerAty1.NW_012001605v1       C 0 C 0
s manLeu1.NW_012099043v1          184367 93 -    785044 gttg--caggctgaagtgaaatggcatgatctcggctcactgcaatctctgcttgcctggttcaagcaatcctcccacctcagcctcccaagtag
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           73436 93 -  10971483 gttg--caggatgaagtgaaatggcatgatctcggctcactgcaatctctgctcgcctggttcaagcaatcctcccacctcagcctcccaagtag
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7659845 95 +  14377064 gttgcccaagctggagtgcgttggcatgatcttggctcactgcaacctctgcttgcctagttcaagcaattctcccacctcagcctcccaggtag
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4128242 95 -   9889416 gttgcccaagctggagtgcattggcatgatcttggctcactgaaacctctgcttgcctagttcaagcaatcctcccacctcagcatcccaggtag
i aotNan1.NW_018487195v1       C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    149371 571 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e otoGar3.GL873528              20757428 2250 +  38779656 T
e dasNov3.JH568778               6689962 889 +   6883506 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e chlSab2.chr22                    62197 468 - 101219884 I

a score=5159.000000
s hg38.chr14_GL000009v2_random    175964 1 +    201709 c
s panTro5.chr9                  41866023 1 + 116767853 c
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42112693 1 -  86207423 t
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204268365 1 - 204787373 c
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167572 1 - 192460366 c
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          187071 1 -  11645122 c
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172279 1 -   6739814 c
i cerAty1.NW_012001605v1       C 0 C 0
s manLeu1.NW_012099043v1          184460 1 -    785044 c
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    149942 1 + 181502896 c
i nasLar1.chr2                 I 571 I 538
s colAng1.NW_012123820v1           73529 1 -  10971483 c
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7659940 1 +  14377064 c
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4128337 1 -   9889416 c
i aotNan1.NW_018487195v1       C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e otoGar3.GL873528              20757428 2250 +  38779656 T
e dasNov3.JH568778               6689962 889 +   6883506 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e chlSab2.chr22                    62197 468 - 101219884 I
e panPan2.chr3                  77833584 0 + 205426864 C
e gorGor5.CYUI01000160v1          243062 0 +    245036 C

a score=225997.000000
s hg38.chr14_GL000009v2_random    175965 40 +    201709 tgggattacaggcacatgccaccacactcagataattttt
s panTro5.chr9                  41866024 40 + 116767853 tgggattacaggcacatgccaccacactcagataattttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833584 40 + 205426864 tgggattacaggcacatgccaccacactcggataattttt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          243062 40 +    245036 tgggattacaggcacatgccaccacactcggataattttt
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112694 40 -  86207423 tgggattacaggtgcgagccaccacacttcgataattttt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204268366 40 - 204787373 tgggactacaggcacacgccaccacactaaggtaattttt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167573 40 - 192460366 tgggactacaggcacacgccaccacactcaggtaattttt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          187072 40 -  11645122 tgggactacaggcacacgccaccacactcaggtaattttt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172280 40 -   6739814 tgggactacaggcacacaccaccacactcaggtaattttt
i cerAty1.NW_012001605v1       C 0 C 0
s manLeu1.NW_012099043v1          184461 39 -    785044 tgggactacaggcgc-cgccaccacactcaggtaattttt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           73530 40 -  10971483 tgggactacaggcacatgccaccacactcaggtaattttt
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7659941 40 +  14377064 tgggattataggcacccactatcatacccacctaattttt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4128338 40 -   9889416 tgggagtgcaggcacccgctatcatgcccacctaattttt
i aotNan1.NW_018487195v1       C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    149943 538 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e otoGar3.GL873528              20757428 2250 +  38779656 T
e dasNov3.JH568778               6689962 889 +   6883506 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e chlSab2.chr22                    62197 468 - 101219884 I

a score=1360130.000000
s hg38.chr14_GL000009v2_random    176005 189 +    201709 gtatttttagtagagatggggtttcacactgtttgccaggctggtctcaaactcctgacctcaagtgatctgccc----acctcagcctaccaaagtgctgggattacaggtgtaagccactgaccctgccCAAAAA-TATTTTAACCAATAGCAAAGCACATTATTTCATTACATTTTTTCAAAAGTTGCCAG
s panTro5.chr9                  41866064 189 + 116767853 gtatttttagtagagatggggtttcaccatgtttgccaggctggtctcaaactcctgacctcaagtgatctgccc----acctcagcctaccaaagtgctgggattacaggtgtaagccactgacccggccCAAAAA-TATTTTAACCAATAGCAAAGCACATTATTTCGTTACATTTTTTCAAAAATTGCCAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833624 189 + 205426864 gtatttttagtagagatggggtttcaccatgtttgccaggctggtctcaaactcctgacctcaagtgatgcaccc----gccttggcctcccaaagtgctgggattacaggcgtgagccactgaccctggccAAAAA-CATTTTAACCAATAGCAAAGCACATTATTTCATTTCATTTTTTCAAAAGTTGCCAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          243102 189 +    245036 gtatttttagtagagatggggtttcaccatgtttgccaggctggtctcaaactcctgacctcaagtgatgcaccc----gccttggcctcccaaagtgctgggattacaggcgtgagccactgaccctggccAAAAA-CATTTTAACCAATAGCAAAGCACATTATTTCATTTCATTTTTCCAAAAGTTGCCAG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112734 182 -  86207423 gtatttttagtagagatggagtttcaccatgtttgccaggctggtctcaaactcttgacctcaagtgatgcaccc----gccttggcatcccaaagtgct-ggattacaggcgtgagccactg-ccccggccAAAAG-CATTTTAACCAATAGCAAAGCATATTACTT-----CATTTTTTCAAAAGTTGCCAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204268406 189 - 204787373 gtatttttagtagagatgaggttttaccatgttttccaggctggtctcaaactcctgacctcaactgatgcagcc----gccttggcctcccaaagttctgggattacaggcatgagccactgcccctggccAAAAA-CATTTTAACCAATAGCAAAACACATTATTTCATTTCATTTTTTCAAAAGTTGCCAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167613 189 - 192460366 gtatttttagtagagatgaggtttcaccatgttttccaggctggtctcaaactcctgacctcaactgatgcagcc----gccttggcctcccaaagttctgggattacaggcatgagccactgcccctggccAAAAG-CATTTTAACCAATAGCAAAACACATTATTTCATTTCATTTTTTCAAAAGTTGCCAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          187112 189 -  11645122 gtatttttagtagagatgaggtttcaccatgttttccaggctggtctcaaactcctgacctcaactgatgcagcc----gccttggcctcccaaagttctgggattacaggcatgagccactgcccctggccAAAAA-CATTTTAACCAATAGCAAAACACATTATTTCATTTCATTTTTTCAAAAGTTGCCAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172320 189 -   6739814 gcatttttagtagagatgaggtttcaccatgttttccaggctggtctcaaactcctgacctcaactgatgcacct----gccttggcctcccaaagttctgggattacaggcatgagccactgcccctggccAAAAA-CATTTTAACCAATAGCAAACCACATTATTTCATTTCATTTTTTCAAAAGTTGCCAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    62665 193 - 101219884 gtatttttagtagagatgaggtttcaccatgttttccaggctggtctcaaactcctgacctcaactgatgcacccacctgccttggcctcccaaagttctgggattacaggcatgagccactgcccctggccAAAAA-CATTTTAACCAATAGCAAAACACATTATTTCATTTCATTTTTTCAAAAGTTACCAG
i chlSab2.chr22                I 468 C 0
s manLeu1.NW_012099043v1          184500 189 -    785044 gtatttttagtagagatgaggtttcaccatgttttccaggctggtctcaaactcctgacctcaactgatgcaccc----gccttggcctctcaaagttctgggattacaggcatgagccactgcccctggccAAAAA-CATTTTAACCAATAGCAAAACACATTATTTCATTTCATTTTTTCAAAAGTTGCCAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           73570 189 -  10971483 gtatttttagtagagatggggtttcaccatgttttccaggctggtctcaaactcctgacctcaatggatgcacct----gccttggcctcccacagttctgggattacaggcatgagccactgcccctggccAAAAA-CATTTTAACCAATAGCAAAACACATTATTTCATTTCATTTTTTCAAAAGTTGCCAG
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7659981 186 +  14377064 gtatttttagtagagatggggtttcaccatgtttgccaggctggtctcaaactcctaacctcaagtgatacacac----acctcagc---ccaaagtgct-ggattacaagtgtgagccaccatgcttggccAAAAATCATCTTAACCACTAGCAAAGTGCATTATTTCATTTTATTGTTTCAAAAGTTGCCAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4128378 187 -   9889416 gtatttttagtagagatggggtttcaccatgtttgccaggctggtctcaaactcctaacctcaagtgatgcaccc----acctcagc---ccaaagtgctgggattacaggtgtgagccaccacgcgtggccAAAAATCATTTTAACCAATAGCAAAGTACATTATTTCATTTTATTGTTTCAAAAGTTGCCAG
i aotNan1.NW_018487195v1       C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    149943 538 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e otoGar3.GL873528              20757428 2250 +  38779656 T
e dasNov3.JH568778               6689962 889 +   6883506 I
e saiBol1.JH378168              10930836  18 -  13128814 I

a score=2241497.000000
s hg38.chr14_GL000009v2_random    176194 308 +    201709 TAATTTCAATTAAAAatattatataacatgtttaatgcaatacaaatgcttttcaatgtacaatggggttaagtcttgataagctgattataaattgaaaatacagtaagttaaaaatgtatttaata--cctaacttactgaat--------------------------------------------------atcacagcttagcctggcatacctttaatgtgctcagaacacttacatcagctgacaattgggcaaaatcattgaatacaaaacctgctttataataaagtattggatattttatgtaatttgttgaatattgtactgaaagtgaaaagcagaatggttatattc
s panTro5.chr9                  41866253 308 + 116767853 TAATTTCAATTAAAAatattatataacatgtttaatgcaatacaaatgcttttcaatgtacaatggggttaagtcttgataagctgattataagttgaaaatacagtaagttaaaaatgtatttaata--cctaacttactgaat--------------------------------------------------atcacagcttagcctggcatacctttaatgtgatcagaacacttacttcagctgacaattgggcaaaatcattgaatacaaaacccactttataataaagtattggatattttatgtaatttgttgaatattgtactgaaagtgaaaagcagaatggttatattc
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77833813 310 + 205426864 TAATTTCAATTAAAAATATTATATAACATGCTTAATGCAATAcaaatgcttttcaatgtacaatggggttaagtcttgataagctgatcataaattgaaaatactgtaagttaaaaatgtatttaatatgcctaacatactgcac--------------------------------------------------atcacagcttagcctggcatacctttaatatgctcagaacacttacatcagctgacagctgggcaaaatcattgaatacaaaacccattttataataaagtattggatattttatgtaatttgttgaatattgtactgaaagtgaaaagcagaatagttatattc
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          243291 310 +    245036 TAATTTCAATTAAAAATATTATATAACACGCTTAATGCAATAcaaatgcttttcaatgtacaatggggttaagtcttgataagctgatcataaattgaaaatactgtaagttaaaaatgtatttaatatgcctaacatactgcac--------------------------------------------------atcacagcttagcctggcatacctttaatatgctcagaacacttacatcagctgacagctgggcaaaatcattgaatacaaaacctattttataataaagtattggatattttatgtaatttgttgaatattgtactgaaagtgaaaagcagaatagttatattc
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42112916 293 -  86207423 TAATTTCAATACAAAATATTATATAACATGCTTAATGCAATAcaaatgcttttcaatgtagaatggggtt--gtcttgataagatgatcataaattgaaaatactgtaagtt-aaaatgtatttaacgtgcctaacatactgaac--------------------------------------------------atcacgacttagcctggcatacctttaatgtgctcagaacacttacatcagctgacagttgggcaaaatcattgaatacaaaacccactttataataaagtattagata--------------ttgaatattgtactgaaagtgaaaagcagaatagttatattc
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204268595 304 - 204787373 TAATTTCAATTAAAAATATTATATAACATGCTTAATGCGATAcaaatgcttttcaatgtacaatggggttaagtcttgataaactgatcataaatt-aaaatactgtaagttaaaaatgtatttaatatacctgacatactgaat--------------------------------------------------atca-----tagcctggcatacctttaatgtgctcagaatacttacatcagctgacagttgggcaaaatcattgaatacaaaacccattttataataaagtattgtatattttatgtaatttgttgaatattatactgaaaatgaaaagcagaatagttatattc
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    167802 304 - 192460366 TAATTTCAATTAAAAATATTATATAACATGCTTAATGCGATAcaaatgcttttcaatgtacaatggggttaagtcttgataaactgatcataaatt-aaaatactgtaagttaaaaatgtatttaatatacctgacatactgaat--------------------------------------------------atca-----tagcctggcatacctttaatgtgctcagaatacttacatcagctgacagttgggcaaaatcattgaatacaaaacccattttataataaagtattgtatattttatgtaatttgttgaatattatactgaaaatgaaaagcagaatagttatattc
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          187301 302 -  11645122 TAATTTCAATTAAAAATATTATATAACATGCTTAATGCGATAcaaatgcttttcaatgtacaatggggttaagtc--gataaactgatcataaatt-aaaatactgtaagttaaaaatgtatttaatatacctgacatactgaat--------------------------------------------------atca-----tagcctggcatacctttaatgtgctcagaatacttacatcagctgacagttgggcaaaatcattgaatacaaaacccattttataataaagtattgtatattttatgtaatttgttgaatattatactgaaagtgaaaagcagaatagttatattc
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172509 301 -   6739814 TAATTTCAATTAAAAATATTATATAACATGCTTAATGTGATAcaaatgcttttcaatgtacaatggggttaagtcttgataaactgatcataaatt-aaaatactataagttaaaaatgtatttaatatacctgacatactgaat--------------------------------------------------atcacagcttagcctggcatacctttaatgtgctcagaatacttacatcagctga--------caaaatcattgaatacaaaacccattttataataaagtatggtatattttatgtaatttgttgaatattatactgaaagtgaaaagcagaatagttatattc
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    62858 310 - 101219884 TAATTTCAATTAAAAATATTATATAACATGCTTAATGTGATAcaaatgcttttcaatgtacaatggggttaagtcttgataaactgatcataaattgaaaatactgtaagttaaaaatgtatttaatatacctgacatactgaat--------------------------------------------------atcacggcttagcctggcatacctttaatgtgctcagaatacttacatcagctgacagttgggcaaaatcattgaatacaaaacccattttataataaagtagtgtatattttatgtaatttgttgaatattatactgaaagtgaaaagcagaatagttatattc
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          184689 309 -    785044 TAATTTCAATTAAAAATATTATATAACATGCTTAATGTGATAcaaatgcttttcaatgaacaatggggttaagtcttgataaactgatcataaatt-aaaatactgtaagttaaaaatgtatttaatatacctgacatactgaat--------------------------------------------------atcacagcttagcctggcatacctttaatgtgctcagaatacttacatcagctgacagttgggcaaaatcattgaatacaaaacccattttataataaagtatggtatattttatgtaatttgttgaatattatactgaaagtgaaaagcagaatagttatattc
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           73759 360 -  10971483 TAATTTCAATTAAAAATATTATATAACATGCTTAATGCAATAcaaatgcttttcaatgtacaatggggttaagtcttgataaactgatcataaattgaaaatactgtaagttaaaaatgtatttaatatacctgacatactgaataatagtatattaaatcactgaaatgtatttaatatacctgactaccaaacatcatagcttagcctggcatacctttaatgtgctcagaatatttacatcagctgacagttgggcaaaatcattgaatacaaaacccattgtataataaagtattgtatattttatgtaatttgttgaatattatactgaaagtgaaaatcagaatagttatattc
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7660167 309 +  14377064 TAATTTCAATT-AAAATATTATATAATCTGCTTAATGCAATACACGtgcttttcaatgtacaatggggttatgtcttgataagctgatcataaattgaaaatactgtaagttaaaaatgtgtttaatatacctaacatactgaac--------------------------------------------------atcacagtgtagcctggcatacctttaaagtgctcaggacacttacatcagcctatagttgggcaaaataattgaattcacaatctattttataataaagtattggatattttatgtaatcttttgactattgtactgaaagtgaaaagcaaaatagttatattc
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4128565 308 -   9889416 TAATTTCAATTAAAAATATTATATAACCTGCTTAATGCAATAcacatacttttcaatgtacaatgggtt--tgtcttgataagctgatcgtaaattgaaaatactgtaagttaaaaatgtgtttaatatacctaacatactgaac--------------------------------------------------atcacagtgtagcctggcatacctttaatgtgctcaggacacttacgtcagcctatagttgggcaaaataattgaattcaaaatctattttataataaagtattggaaattttatgtaatttgttgactattgtactgaaagtgaaaagcagaatagttatattc
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20755178 139 +  38779656 caatgtaagttgaaaatatcat------------------------------------------------------------------------------------taaattgaaagtatatttaatacacat----tactaaac--------------------------------------------------atcaaagcttagcctggcctacctt-----------------------------------------------------------------------------------atttcatgtaatgtattgaatactttactgaaagtaaaaaacagaatagttcttgtc
i otoGar3.GL873528             T 2250 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    149943 538 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e dasNov3.JH568778               6689962 889 +   6883506 I
e saiBol1.JH378168              10930836  18 -  13128814 I

a score=21355.000000
s hg38.chr14_GL000009v2_random    176502 5 +    201709 tattc---
s panTro5.chr9                  41866561 5 + 116767853 tattc---
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834123 5 + 205426864 tattc---
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          243601 5 +    245036 tattc---
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113209 5 -  86207423 tattc---
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204268899 5 - 204787373 tattg---
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168106 5 - 192460366 tattg---
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          187603 5 -  11645122 tattg---
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172810 5 -   6739814 tattg---
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    63168 5 - 101219884 tattg---
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          184998 5 -    785044 tattg---
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    150481 5 + 181502896 tattg---
i nasLar1.chr2                 I 538 I 127
s colAng1.NW_012123820v1           74119 5 -  10971483 tattg---
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7660476 5 +  14377064 tacag---
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4128873 5 -   9889416 tacag---
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20755317 5 +  38779656 ---tgagt
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e dasNov3.JH568778               6689962 889 +   6883506 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=827484.000000
s hg38.chr14_GL000009v2_random    176507 108 +    201709 aaagctatcacttttgcttcatcataaagtaaaaaaa-a--tcatagattgaaccattatcagttgttgaccatctgtgtatatgtatg----------tgtgtgtgtacctatataaaca
s panTro5.chr9                  41866566 110 + 116767853 aaagctatcacttttgcttcatcataaagtaaaaaaa-aaatcataaattgaaccattataagttgttgaccatctgtgtatatgtatg----------tgtgtgtgtacctacataaaca
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834128 108 + 205426864 aaagctatcacttttgcttcaacataatgttaaaaaa-a--tcataaattgaaccattataagttggtgaccatctgtgtatatgtatg----------tgcatgtgtatctatataaata
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          243606 107 +    245036 aaagctatcacttttgcttcatcataatgttaaaaaa----tcataaattgaaccattataagttggtgaccatctgCGtatatgtatg----------tgcatgtgtatctatataaata
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113214 105 -  86207423 aaagctatcacttttgcttcatcataaagttaaaaaaca--tcataaattgaaccattataagttggtgaccatctgtgtatatgtatg----------tgtgtgtgtatctatat----a
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204268904 117 - 204787373 aaagctatcacttttgcttcatcataaagtaaaaaaa----tcataaattgaaccattataagttggtgaccatctgtgtatatgtatgtgtgtgtatatgtgtgtgtatctatataaata
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168111 117 - 192460366 aaagctatcacttttgcttcatcataaagtaaaaaaa----tcataaattgaaccattataagttggtgaccatctgtgtatatgtatgtgtgtgtatatgtgtgtgtatctatataaata
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          187608 117 -  11645122 aaagctatcccttttgcttcatcataaagtaaaaaaa----tcataaattgaaccattataagttggtgaccatctgtgtatatgtatgtgtgtgtatatgtgtgtgtatctatataaata
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172815 117 -   6739814 aaagctatcacttttgcttcatcataaagtaaaaaaa----tcataaattgaaccattataagttggtgaacatctgtgtatatgtatgtgtgtgtatatgtgtgtgtatctatataaata
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    63173 117 - 101219884 aaagctatcacttttgcttcatcataaagtaaaaaaa----tcataaattgaaccattataagttggtgaccatctgtgtatatgtatgggtgtgtatatgtgtgtgtatctatataaata
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185003 117 -    785044 aaagctatcacttttgctttatcatcaagtaaaaaaa----tcataaattgaaccattataagttggtgaccatctgtgtatatgtatgtgtgtgtatatgtgtgtgtatctatataaata
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74124 116 -  10971483 aaagctatcacttttgctttatcat-aagtaaaaaaa----tcataaattgaaccattataagttggtgaccatctgtgtatatgtatgtgtgtgtatatgtgtgtgtatctatataaata
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7660481 117 +  14377064 aaagctatcacttttgtttcatcataaagtcaacaaa----tcataaactgaaccattataagttgttgaccatctgtgtatgtgtgtgtgtgtgtattggcgtgtgtctctatataaata
i cebCap1.NW_016107322v1       C 0 I 56
s aotNan1.NW_018487195v1         4128878 101 -   9889416 aaacctatcacttttgtttcatcataaagtcgacaaa----tcataaattgaaccattataagttggtgaccatctgtgtatgtgtgtgtgta----------------tctatataaata
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20755322  99 +  38779656 --acatatcacttttgtaccatcataaagttgaaaaa----tctcaagtagaaccattgcaagttggggaccatctgtgtgtgtgtgtg----------------tatacatatataagca
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    150486 127 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e dasNov3.JH568778               6689962 889 +   6883506 I
e saiBol1.JH378168              10930836  18 -  13128814 I

a score=53783.000000
s hg38.chr14_GL000009v2_random    176615 15 +    201709 ----tgtatgtttatatat
s panTro5.chr9                  41866676 15 + 116767853 ----tgtatgtttatatat
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834236 15 + 205426864 ----cgtatgtttatatat
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          243713 15 +    245036 ----tgtatgtttatatat
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113319 15 -  86207423 ----tgtatgtttctatat
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269021 14 - 204787373 ----tgtatgtttatata-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168228 14 - 192460366 ----tgtatgtttatata-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          187725 14 -  11645122 ----tgtatgtttatata-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172932 14 -   6739814 ----tgtatgtttatata-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    63290 14 - 101219884 ----tgtatgtttatata-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185120 14 -    785044 ----tgtatgtttatata-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74240 12 -  10971483 ----t-tatgtttatat--
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4128979  9 -   9889416 ----ttaatgttt------
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20755421 15 +  38779656 tacatatatgcgtat----
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    150486 127 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e dasNov3.JH568778               6689962 889 +   6883506 I
e cebCap1.NW_016107322v1         7660598 56 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=11411.000000
s hg38.chr14_GL000009v2_random    176630 6 +    201709 atattt
s panTro5.chr9                  41866691 6 + 116767853 atattt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834251 2 + 205426864 a----t
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          243728 2 +    245036 a----t
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113334 6 -  86207423 atattt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269035 5 - 204787373 -tattt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168242 5 - 192460366 -tattt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          187739 5 -  11645122 -tattt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172946 5 -   6739814 -tattt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    63304 5 - 101219884 -tattt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185134 1 -    785044 -----t
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    150613 4 + 181502896 --attt
i nasLar1.chr2                 I 127 I 268
s colAng1.NW_012123820v1           74252 6 -  10971483 atattt
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4128988 6 -   9889416 acattt
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20755436 6 +  38779656 atatgt
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e dasNov3.JH568778               6689962 889 +   6883506 I
e cebCap1.NW_016107322v1         7660598 56 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=147429.000000
s hg38.chr14_GL000009v2_random    176636 52 +    201709 gtgtgtgtatatatCCTCGgtgtgtgtgtatgtgtgtttgagagtgtgtgtg
s panTro5.chr9                  41866697 52 + 116767853 gtgtgcgtatatatCCTCGgtgtgtgtgtatgtgtgtttgagagtgtgtgtg
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834253 46 + 205426864 gtgtgcatatatatCCTCtgtgtgtgagtgtgtgtgt------gtgtgtgtg
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          243730 50 +    245036 gtgtgcatatatatCCTCtgtgtgtgtgtgtgtgagt--gtgtgtgtgtgtg
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113340 40 -  86207423 gtgtgtatatatatcctctgtgtgtga------------gagagagtgtgtg
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269040 40 - 204787373 gtgtgcatatatatcctctgtgtgtgt------------gagagagagtgtg
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168247 40 - 192460366 gtgtgcatatatttcctctgtgtgtgt------------gagagagagtgtg
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          187744 40 -  11645122 gtgtgcatatatatcctctgtgtgtgt------------gagagagagtgtg
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172951 40 -   6739814 gtgtgcatatatatcctctgtgtgtgt------------gagagagagtgtg
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    63309 40 - 101219884 gtgtgcatatatatcctctgtgtgtgt------------gagacagagtgtg
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185135 40 -    785044 gtgtgcatatatatcctctgtgtgtgt------------gcgagagagtgtg
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74258 30 -  10971483 gtgtgcatatatatcctctgtgtgt----------------------gtgtg
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4128994 15 -   9889416 gtgtgcatata----ctcg---------------------------------
i aotNan1.NW_018487195v1       C 0 I 4
s otoGar3.GL873528              20755442 18 +  38779656 gtgcatgtgtatgtattc----------------------------------
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    150617 268 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e dasNov3.JH568778               6689962 889 +   6883506 I
e cebCap1.NW_016107322v1         7660598 56 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=1652795.000000
s hg38.chr14_GL000009v2_random    176688 213 +    201709 tgtgtgtgtgt----ATGAAATTGTAGGGAAGTAAAATTTCTTATCTTATAGATAT-AGCA-TGTTAACATGTTGGTACCTATCCTCCTGAGATGTAAAATTTTACATGGATAGATGTGTACATTTACAGTTGTACACAAAGAGAAACATATTCTGTAGTCTCTTTGTTTTTCTGCAGTTTCATTCAACACTATCTGGTTTATATGGATGAT--------------------------------------------TACatat
s panTro5.chr9                  41866749 217 + 116767853 tgtgtgtgtgtgtgtATGAAATTGTAGGAAAGTAAAATTTCTTATCTTATAGATAT-AGCA-TGTTAACATGTTGGTACCTATCCTCCTGAGATGTAAAATTTTACATGGATAGATGTGTACATTTACAGTTGTACACAAAGAGAAACATATTCTGTAGGCTCTTTGTTTTTCTGCAGTTTCATTCAACACTATCTGGTTTATATGGATGAT--------------------------------------------TACATAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834299 216 + 205426864 tgtgtgtgtgtgtgtATGAAATTGCAG--AAGTAAAATTTCTTATCTTATAGATAT-AGCATTGTTAACATGTTGGTACCTATCCTCCTGAGATGTAAATTTTTACATGGATAGATGTGTACATTTACAGTTGTACACAAAGAGAAACATATTCTGTCGGCTCTTTGTTTTTCTGCAGTTTCATTCAACACTATCTGGTTTATATGGATGAT--------------------------------------------TACATAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          243780 218 +    245036 tgtgtgtgtgtgtgtATGAAATTGCAGGAAAGTAAAATTTCTTATCTTATAGATAT-AGCATTGTTAACATGTTGGTACCTATCCTCCTGAGATGTAAAATTTTACATGGATAGATGTGTACATTTACAGTTGTACACAAAGAGAAACATATTCTGTTGGCTCTTTGTTTTTCTGCAGTTTCATTCCACACTATCTGGTTTATATGGATGAT--------------------------------------------TACATAT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113380 209 -  86207423 tgtatgt--------atgAAATTGTAGGAAAGTAAAATTTCGTATCTTATAGATAC-AGCA-TGTTAACAGGTTGGTACCTATCCTCCTGAGATGTAAAACTTTACATGGATAGATGTGTGCATTTACAGTTGTACACAAAGAGAAACATATTCGCTAGGCTCTTTAGTTTTCTGTAGTTTCATTCAACACTATCTGGTTTATATGGATGAT--------------------------------------------TACAAAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269080 210 - 204787373 tgtgtgt--------atgAAATTGTAGGAAAGTAAAATTTCTTATCTTGTAGATAT-AACATTGTTAACATGTTGGTGCCTATTCTTCTGAGATGTAAAATTTTACATGGATAGATGTGTACATTTACAGGTGTACACAAAGAGAAACATATTCTGTAGGCTCTTTGTTTTTCTGCAGTTTCATTCAACACTATCTGGTTTATATGGATGAT--------------------------------------------TACATAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168287 210 - 192460366 tgtgtgt--------atgAAATTGTAGGAAAGTAAAATTTCTTATCTTGTAGATAT-AGCATTGTTAACATGTTGGTGCCTATCCTTCTGAGATGTAAAATTTTACATGGATAGATGTGTACATTTACAGGTGTACACAAAGAGAAACATATTCTGTAGGCTCTTTGTTTTTCTGCAGTTTCATTCAACACTATCTGGTTTATATGGATGAT--------------------------------------------TACATAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          187784 210 -  11645122 tgtgtgt--------atgAAATTGTAGGAAAGTAAAATTTCTTATCTTGTAGATAT-AGCATTGTTAACATGTTAGTGCCTATCCTTCTGAGATGTAAAATTTTACATGGATAGATGTGTACATTTACAGGTGTACACAAAGAGAAACATATTCTGTAGGCTCTTTGTTTTTCTGCAGTTTCATTCAACACTATCTGGTTTATATGGATGAT--------------------------------------------TACATAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          172991 210 -   6739814 tgtgtgt--------atgAAATTGTAGGAAAGTAAAATTTCTTATCTTGTAGATAT-AGCATTGTTAACATGTTGGTGCCTATCCTTCTGAGATGTAAAATTTTACATGGATAGATGTGGACATTTACAGGTGTACACCAAGAGAAACATACTCTGTAGGCTCTTTGTTTTTCTGCAGTTTCATTCAACACTATCTGGTTTATATGGATGAT--------------------------------------------TACATAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    63349 210 - 101219884 tgtgtgt--------atgAAATTGTAGGAAAGTACAATTTCTTATCTTGTAGATAT-GGCATTGTTAACATGTTGGTGCCTGTCCTTCTGAGATGTAAAATTTTGCATGGATAGATGTGTACATTTACAGGTGTACACAAAGAGAAACATATTCTGTAGGCTCTTTGTTTTTCTGCAGTTTCATTCAACACTATCTGGTTTATATGGATGAT--------------------------------------------TACATAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185175 210 -    785044 tgtgtgt--------atgAAATTGTAGGAAAGTAAAATTTCTTATCTTGTAGATAT-AGCATTGTTAACATGTTGGTGCCTATCCTTCTGAGATGTAAAATTTTACATGGATAGATGTGTACATTTACAGGTGTACACAAAGAGAAACATATTCTGTAGGCTCTTTGTTTTTCTGCAGTTTCATTCAACACTATCTGGTTTATATGGATGAT--------------------------------------------TACATAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74288 210 -  10971483 tgtgtgt--------atgAAATGGTAGGAAAGTAAAATTTCTTATCTTGTAGATAT-AGCATTGTTAACATGTTGGTGCCTGTCATTCTGAGATGTAAAATTTTACATGGATAGATGTGTACATTTACAGTTGTACACAAAGAGAAACATATTCTGTAGGCTCTTTGTTTTTCTGCAGTTTCATTCAACACTATCTGGTTTATATGGATGAT--------------------------------------------TACATAT
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7660654 194 +  14377064 tatatgt--------atgaaattataGGAAAGTAAAATTTCTTATCTTCTAGATAT-AGC----------------TGCCTATCCTTCTAAGATGTAAAATTTTACATGGATAGACGTGTGCATTTGAAATTGTACACAAAGGGAAACATATTTTGTATGCCTTTTGTTTTTCTGCATTTTCATTCAACACTATCTGTTTTATATGAATGAT--------------------------------------------TATATAT
i cebCap1.NW_016107322v1       I 56 C 0
s aotNan1.NW_018487195v1         4129013 194 -   9889416 tatgtgt--------atgAAATTACAGGAAAGTAAAATTTCTTACCTTGTAGATAT-AGC----------------TGCCTATCCTTCTAAGATGTAAAATTTTACATGGATAGATGTGTGCATTTGAAGTTATACACAAAGAGAAACATATTTTGTATGCTCCTTGTTTTTCTGCATTTTCATTCAACACTATCTGGTTTATATGGATGAT--------------------------------------------TATATAT
i aotNan1.NW_018487195v1       I 4 C 0
s otoGar3.GL873528              20755460 251 +  38779656 tatatat--------atGAAATTGTAAGGAAGTAAAATTTCTTGTCCTCTAGATATAAGCACTGTTAACATTTTGGTGCTAATCCTTGCAAGATGTAAAATTTTGCACAGATAGATGTACATATTTACAGTTTTACACAAAGATAAACATGTTAAGTGTGCTCTTTGTTCTT-GGATTTTTCATTTAAA---ATCTGTTTTATGTGGCTGATTTTTTTGTGGCtgtatatatgcatgtatacatgtgtgcttaacgtgtatat
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    150617 268 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e dasNov3.JH568778               6689962 889 +   6883506 I
e saiBol1.JH378168              10930836  18 -  13128814 I

a score=154935.000000
s hg38.chr14_GL000009v2_random    176901 22 +    201709 at-------------------------------------------------------------------aatgctaggatgaaggttct
s panTro5.chr9                  41866966 22 + 116767853 AT-------------------------------------------------------------------AATGCTAGGATGAAGGTTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834515 22 + 205426864 AT-------------------------------------------------------------------AATGCTAGGATGAAGGTTCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          243998 22 +    245036 AA-------------------------------------------------------------------AATGCTAGGATGAAGGTTCT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113589 22 -  86207423 AT-------------------------------------------------------------------AATGTTAGGGTGAAGATTCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269290 22 - 204787373 AT-------------------------------------------------------------------AATGCTAGGATGAAGGTTCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168497 22 - 192460366 AT-------------------------------------------------------------------AATGCTAGGATGAAGGTTCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          187994 22 -  11645122 AT-------------------------------------------------------------------AATGCTAGGATGAAGGTTCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173201 22 -   6739814 AT-------------------------------------------------------------------AATGCTAGGATGAAGGTTCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    63559 22 - 101219884 AT-------------------------------------------------------------------AATGCTAGGATGAAGGTTCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185385 22 -    785044 AT-------------------------------------------------------------------AATGCTAGGATGAAGGTTCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74498 22 -  10971483 AT-------------------------------------------------------------------AATGCTAGGATGAAAGTTCT
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7660848 22 +  14377064 AT-------------------------------------------------------------------AATGATAGGATGGAGGTTCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129207 22 -   9889416 AT-------------------------------------------------------------------AATGATAGGATGAAGGTTCT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20755711 87 +  38779656 atgcatgtatggatacacatgtgcttatatatgcatgtatgcatatgtgtgtatACACACATACACATCAGTGACAGAATAAATACT--
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6690851 22 +   6883506 AT-------------------------------------------------------------------GATACCAGGATAAATGCTCC
i dasNov3.JH568778             I 889 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    150617 268 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=25348.000000
s hg38.chr14_GL000009v2_random    176923 3 +    201709 tct
s panTro5.chr9                  41866988 3 + 116767853 TCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834537 3 + 205426864 TCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244020 3 +    245036 TCT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113611 3 -  86207423 TCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269312 3 - 204787373 TCC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168519 3 - 192460366 TCC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188016 3 -  11645122 TCC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173223 3 -   6739814 TCC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    63581 3 - 101219884 TCC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185407 3 -    785044 TCC
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    150885 3 + 181502896 TCC
i nasLar1.chr2                 I 268 I 160
s colAng1.NW_012123820v1           74520 3 -  10971483 TCC
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7660870 3 +  14377064 TCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129229 3 -   9889416 TCT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20755798 3 +  38779656 TTT
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6690873 3 +   6883506 TCA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=1296603.000000
s hg38.chr14_GL000009v2_random    176926 162 +    201709 gtataactttgaaacttccttgattatcaaccattggtatattcttagaataggattttattttagaattaagatccttgttt-caggactctagactgttaacacacagagccaataattattcagaa-tggttgggttagttcacattcccacagatgagac
s panTro5.chr9                  41866991 162 + 116767853 CTATAACTTTGAAACTTCCTTGATTATCAACCCTTGGTATATTCTTAGAATAGGATTTTATTTTAGAATTAAGATCCTTGTTT-CAGGACTCTAGACTGTTAATACGCAGAGCCAATAATTATTCAGAA-TGGTTGGGTTAGTTCACATTCCCACAGATGAGAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834540 162 + 205426864 CTATAACTTTGAAACTTCCTTGATTATCAACCCTTGGCATATTCTTGGAATAGGATTTTATTTTAGAATTAAGATCCTTGTTT-CAGGACTCTAGCCTGTTAACACACAGAGCCAATAATTATTCAGAA-TGGTTGGGTTAGTTCACATTCCCACAGATGGGAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244023 161 +    245036 TTATAACTTTGAAACTTCCTTGATTATCAACCCTTGGCATATTCTTGGAATAGAATTTTATTTTAG-ATTAAGATCCTTGTTT-CAGGACTCTAGCCTGTTAACACACAGAGCCAATAATTATTCAGAA-TGGTTGGGTTAGTTCACATTCCCACAGATGGGAC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113614 162 -  86207423 CTATAACTTTGACACTTCCTTGATTATCAACCCTTGGCATATTCTTAGAATAGGATTTTATTTTAGAATTAAGATCCTTGTTT-TAGGACTCTAGACTGTTAACAGACAGAGCCAATAATTATTCAGAA-TGGTTGGGTTAATTCACATTCCCACAGATGGGAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269315 160 - 204787373 CTATAACTTTGAAACTTCCTTGATTATCAACCCTTGGCATATTCTTAGAATAGGATTTTATTTTAGAATTAGGATCCTTGTTT-CAGGACTCTAGTCCGTTAACACACAGAGCCAATAATTATTCAGAA-TGGTCAGGTTAGTTTACATTCCCACAA--GGGAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168522 160 - 192460366 CTATAACTTTGAAACTTCCTTGATTATCAACCCTTGGCATATTCTTAGAATAGGATTTTATTTTAGAATTAGGATCCTTGTTT-CAGGACTCTAGCCCGTTAACACACAGAGCCAATAATTATTCAGAA-TGGTCAGGTTAGTTTACATTCCCACAA--GGGAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188019 160 -  11645122 CTATAACTTTGAAACTTCCTTGATTATCAACCCTTGGCATATTCTTAGAATAGGATTTTATTTTAGAATTAGAATCCTTGTTT-CAGGACTCTAGCCCGTTAACACACAGAGCCAATAATTATTCAGAA-TGGTCAGGTTAGTTTACATTCCCACAA--GGGAC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173226 160 -   6739814 CTATAACTTTGACACTTCCTTGATTATCAACCGTTGGCATATTCTTAGAATAGGATTTTATTTTAGAATTAGGATCCTTGTTT-CAGGACGCTAGCCCGTTAACACACAGAGCCAATAATTATTCAGAA-TGGTCAGGTTAGTTTACATTCCCACAA--GGGAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    63584 160 - 101219884 CTACAACTTTGAAACTTCCTTGATTATCAACCCTTGGCATATTCTTAGAATAGGATTTTATTTTAGAATTAGGATCCTTGTTT-CAGGACTCCAGCCCGTTCACACACAGAGCCAATAATTATTCAGAA-TGGTCAGGTTAGTTTACATGCCCACAA--GGGAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185410 160 -    785044 CTATAACTTTGAAACTTCCTTGATTATCAACCCTTGGCATATTCTTAGAATAGGATTTTATTTTAGAATTAGGATCCTTGTTT-CAGGACTCTAGCCCGTTAACACACAGAGCCAATAATTATTCAGAA-TGGTCAGGTTAGTTTACATTCCCACAA--GGGAC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74523 159 -  10971483 CTATAACTTTGAAACTTCCTTGATTATCAACCCTTGGCATATTCTTAGAATAGGATTTT-TCTTAGAATTAGGATCCTTGTTT-CAAGACTCTTGCCTGTTAACACACAGAGCCAATAATTATTGAGAA-TGGTCAGGTTAGTTTACATTCCCACAA--GGGAC
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7660873 162 +  14377064 CTATAACTTTGAAACTTTCTTGATTATCAGCCCTTGGTATAATCTTAGAATAGGATTTCATTTTAGAATTAGGATCTTGGTTT-CGGAAGTCTAGCCTGTTAACACACAGAGCCAATAATTATTCAGAA-TGGTTGGGCTAGTTCACATTCCCACAAATGGGAC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129232 162 -   9889416 CTATAACTTTGAAATTTTCTTGATTATCAGCCCTTGGTATAATCTTAGAATAGGATTTCATTTTAGAATTAGGATCCTGGTTT-CTGAAGTCTAGGCTGTTAACATACAGAGCCAATAATTACTCAGAA-TGGTTGGGTTAGTTCACATTCCCACAAATGAGAC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20755801 141 +  38779656 CTTTAGCCTTCAAACTTCT----------ACCCTAGGCATATT------------TTTCAATTTAGAATTAGAATTCTCATTTCCAAGGACATAGGCTTTTAGTAGTCATGGTCAACCATTCCCCAGAA-TGGCAGGGTTGACTTATAGCCCCACAAACAGGAC
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6690876 143 +   6883506 CTATACCTCTTAAAGCCCT----CTATTAACCTTGGGTATATTTTAAGAATGGGAATTTCTCTT----------------TTA-AAGGAATATAGCCTATTAGTATATACAAGCATTAATTCTCTGGAAGGGGCTGGGCTAACTCACATTCCCACAAATCATTC
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    150888 160 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836  18 -  13128814 I

a score=9555.000000
s hg38.chr14_GL000009v2_random    177088 1 +    201709 a
s panTro5.chr9                  41867153 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42113776 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269475 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168682 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188179 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173386 1 -   6739814 A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    63744 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185570 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    151048 1 + 181502896 A
i nasLar1.chr2                 I 160 I 117
s colAng1.NW_012123820v1           74682 1 -  10971483 A
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661035 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129394 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20755942 1 +  38779656 A
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6691019 1 +   6883506 A
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e panPan2.chr3                  77834702 0 + 205426864 C
e gorGor5.CYUI01000160v1          244184 0 +    245036 C

a score=879737.000000
s hg38.chr14_GL000009v2_random    177089 117 +    201709 tcaaatgtccaggctgcacagcctcattaacactagatattctggacattttatatagtatttcatctgatat-aaaaagtagaattctaatttgattatggttgttaatttattttt
s panTro5.chr9                  41867154 117 + 116767853 TCAAATGTCCAGGCTGCACAGCCTCATTAACACAAGATTTTCTGGACATTTTATATAGTATTTCATCTTATAT-AAAAAGTAGAATTCTAATTTAATTATGGTTGTTAATTTATTTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834702 117 + 205426864 TCAAATGTCCAGGCTGCACAGCCTCATTAACACTAGATTTTCTGGACATTTTATATAGTATTTCATCTGATAT-AAAAAGTAGAATTCTAATTTAATTATGGTTGTTAATTTATTTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244184 117 +    245036 TCAAATGTCCAGGGTGCACAGCCTCATTAACGCTAGATTTTCTGGACATTTTATATAGTATTTCATCTGATAT-AAAAAGTAGAATTCTAATTTAATTATGGTTGTTAATTTATTTTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113777 117 -  86207423 TCAAATGTCCAGGCTGCACAGCCTCATTAACACTAGATTTTCTGGACATTTTATATAGTATTTCATCTGATAT-AAAAAGTAGAATTCTAATTTAATTATGGTTGTTAATTTATTTTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269476 117 - 204787373 TGAAATGTCCCGGCTGCACAGCCTCATTAATGCTAGATTTTCTGGATGATTTATACAGTATTTCATCTGGTAT-AAAAAGTAGAATTCTAATTTAGTAGTGGTCATTAATTTATTTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168683 117 - 192460366 TGAAATGTCCCGGCTGCACAGCCTCATTAATGCTAGATTTTCTGGATGATTTATACAGTATTTCATCTGGTAT-AAAAAGTAGAATTCTAATTTAGTAGTGGTCATTAATTTATTTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188180 117 -  11645122 TGAAATGTCCCGGCTGCACAGCCTCATTAATGCTAGATTTTCTGGATGATTTATACAGTATTTCATCTGGTAT-AAAAAGTAGAATTCTAATTTAGTAGTGGTCATTAATTTATTTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173387 117 -   6739814 TGAAATGTCCCGGCTGCACAGCCTCATTAATGCTAGATTTTCTGGATGATTTATACAGTATTTCATCTGGTAT-AAAAAGTAGAATTCTAATTTAGTAGTGGTCATTAATTTATTTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    63745 117 - 101219884 TGAAATATCCCGGCTGCACAGCCTCATTAATGCTAGATTTTCTGGATGATTTATACAGTATTTCATCTGGTAT-AAAAAGTAGAATTCTAATTTAGTAGTGGTCATTAATTTATTTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185571 117 -    785044 TGAAATGTCCTGGCTGCATAGCCTCATTAATGCTAGATTTTCTGGATGATTTATACAGTATTTCGTCTGGTAT-AAAAAGTAGAATTCTAATTTAGTAGTGGTCATTAATTTATTTTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74683 117 -  10971483 TGAAATGTCTCGGCTGCACAGCCTTATTAATGCTAGATTTTCTGGATGATTTATATAGTATTTCATCTGGTAT-AAAAAGTAGAATTCTAATTTAGTAGTGATCATTAATTTATTTTT
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661036 112 +  14377064 TCAAGTGTCCAGGCTGCACAGCCTCATTAACAC-----ATGCTGGACATTTTATATAGTATTTCATCTGATATAAAAAAATAGAATTATAATTTAATTATGGTTTTTAATTTATTCT-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129395 111 -   9889416 TCAAGTGTCCAGGCTGCACAGCCTCATTAACAC-----ATTCTGGACATTTTATATAGTATTTCATCTGATAT-AAAGAGTAGAATTATAATTTAATTATGGTTTTTAATTTATTCT-
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20755943 113 +  38779656 TTGAATGTCTAG---GCACGAACTCGTCAACACTAGATTTTGTGAATGTTTCTTATAATATTTCATATGATAC--ACAATTAAAACTCGAATTGAATTTTGTTTGTTAATTTTTCTGT
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6691020  84 +   6883506 ------------GCTGCAAAGCCTTGCTAACACTGGACTTTGATAATTTTTTAT------TCTCAAATGATAGGAAAAAGTAAAATTCTAACTTA------------AATTTAT----
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    151049 117 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836  18 -  13128814 I

a score=-5957.000000
s hg38.chr14_GL000009v2_random    177206 2 +    201709 aa
s panTro5.chr9                  41867271 2 + 116767853 AT
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42113894 2 -  86207423 AT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269593 1 - 204787373 A-
i rheMac8.chr2                 C 0 I 1
s macFas5.chr2                    168800 1 - 192460366 A-
i macFas5.chr2                 C 0 I 1
s macNem1.NW_012010856v1          188297 1 -  11645122 A-
i macNem1.NW_012010856v1       C 0 I 1
s cerAty1.NW_012001605v1          173504 1 -   6739814 A-
i cerAty1.NW_012001605v1       C 0 I 1
s chlSab2.chr22                    63862 1 - 101219884 A-
i chlSab2.chr22                C 0 I 1
s manLeu1.NW_012099043v1          185688 1 -    785044 A-
i manLeu1.NW_012099043v1       C 0 I 1
s nasLar1.chr2                    151166 1 + 181502896 A-
i nasLar1.chr2                 I 117 I 2626
s colAng1.NW_012123820v1           74800 1 -  10971483 A-
i colAng1.NW_012123820v1       C 0 I 1
s otoGar3.GL873528              20756056 1 +  38779656 A-
i otoGar3.GL873528             C 0 I 1
s dasNov3.JH568778               6691104 1 +   6883506 A-
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4129506 0 -   9889416 C
e canFam3.chr31                 28792242 548 -  39895921 I
e cebCap1.NW_016107322v1         7661148 0 +  14377064 C
e saiBol1.JH378168              10930836 18 -  13128814 I
e panPan2.chr3                  77834819 0 + 205426864 C
e gorGor5.CYUI01000160v1          244301 0 +    245036 C

a score=168921.000000
s hg38.chr14_GL000009v2_random    177208 22 +    201709 ctttttagtcattatg-aaaatg
s panTro5.chr9                  41867273 22 + 116767853 CTTTTTAGTCATTATG-AAAATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834819 22 + 205426864 CTTTTTAGTCATTAGG-AAAATG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244301 22 +    245036 CTTTTTAGTCATTAGG-AAAATG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113896 22 -  86207423 ATTTTTAGTCATTATG-AAAATG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269595 22 - 204787373 TTTCTTAGTCATTATG-AAAATG
i rheMac8.chr2                 I 1 C 0
s macFas5.chr2                    168802 22 - 192460366 TTTCTTAGTCATTATG-AAAATG
i macFas5.chr2                 I 1 C 0
s macNem1.NW_012010856v1          188299 22 -  11645122 TTTCTTAGTCATTATG-AAAATG
i macNem1.NW_012010856v1       I 1 C 0
s cerAty1.NW_012001605v1          173506 22 -   6739814 TTTCTTAGTCATTATG-AAAATG
i cerAty1.NW_012001605v1       I 1 C 0
s chlSab2.chr22                    63864 22 - 101219884 TTTCTTAGTCATTATG-AAAATG
i chlSab2.chr22                I 1 C 0
s manLeu1.NW_012099043v1          185690 22 -    785044 TTTCTTAGTCATTATG-AAAATG
i manLeu1.NW_012099043v1       I 1 C 0
s colAng1.NW_012123820v1           74802 22 -  10971483 TTTCTTAGTCATTATG-AAAATG
i colAng1.NW_012123820v1       I 1 C 0
s cebCap1.NW_016107322v1         7661148 21 +  14377064 -TTTGTAGTCATTATG-AAAATG
i cebCap1.NW_016107322v1       C 0 I 32
s aotNan1.NW_018487195v1         4129506 21 -   9889416 -TTTGTAGTTATTATG-AAAATG
i aotNan1.NW_018487195v1       C 0 I 17
s otoGar3.GL873528              20756058 19 +  38779656 TCTTTTGGCCATTATA-GAA---
i otoGar3.GL873528             I 1 C 0
s dasNov3.JH568778               6691105 19 +   6883506 ---TATAGTCATTATATAAAAT-
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=127740.000000
s hg38.chr14_GL000009v2_random    177230 21 +    201709 tttAACTATATGAAAAGCCAG
s panTro5.chr9                  41867295 21 + 116767853 TTTAACTATATGAAAAGCTAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834841 21 + 205426864 TTTAACTATATGGAAAGCCAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244323 21 +    245036 TTTAACTATATGAAAAGCCAG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113918 21 -  86207423 TTTAACTATATGAAAAGCCAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269617 21 - 204787373 TTTAACTACATGAAAAACCAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168824 21 - 192460366 TTTAACTACATGAAAAACCAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188321 21 -  11645122 TTTAACTACATGAAAAACCAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173528 21 -   6739814 TTTAACTACATGAAAAACCAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    63886 21 - 101219884 TTTAACTACATGAAAAACCAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185712 21 -    785044 TTTAACTACCTGAAAAACCAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74824 21 -  10971483 TTTAACTACATGAAAAACCAG
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20756077 20 +  38779656 -CTAATTACATGAAACGCTTG
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6691124 19 +   6883506 TTAAGTTGGATCAAA--TCAG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4129527 17 -   9889416 I
e canFam3.chr31                 28792242 548 -  39895921 I
e cebCap1.NW_016107322v1         7661169 32 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=25681.000000
s hg38.chr14_GL000009v2_random    177251 5 +    201709 GAAAG----
s panTro5.chr9                  41867316 5 + 116767853 GAAAG----
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834862 5 + 205426864 GAAAG----
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244344 5 +    245036 GAAAG----
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113939 5 -  86207423 GAAAG----
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269638 5 - 204787373 GAAAG----
i rheMac8.chr2                 C 0 I 13
s macFas5.chr2                    168845 5 - 192460366 GAAAG----
i macFas5.chr2                 C 0 I 13
s macNem1.NW_012010856v1          188342 5 -  11645122 GAAAG----
i macNem1.NW_012010856v1       C 0 I 7
s cerAty1.NW_012001605v1          173549 5 -   6739814 GAAAG----
i cerAty1.NW_012001605v1       C 0 I 15
s chlSab2.chr22                    63907 5 - 101219884 GAAAG----
i chlSab2.chr22                C 0 I 152
s manLeu1.NW_012099043v1          185733 5 -    785044 GAAAG----
i manLeu1.NW_012099043v1       C 0 I 15
s colAng1.NW_012123820v1           74845 5 -  10971483 GAAAG----
i colAng1.NW_012123820v1       C 0 I 4
s aotNan1.NW_018487195v1         4129544 4 -   9889416 TAAA-----
i aotNan1.NW_018487195v1       I 17 C 0
s otoGar3.GL873528              20756097 5 +  38779656 GAAAG----
i otoGar3.GL873528             C 0 I 10
s dasNov3.JH568778               6691143 5 +   6883506 ----GTTAT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e cebCap1.NW_016107322v1         7661169 32 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=28506.000000
s hg38.chr14_GL000009v2_random    177256 11 +    201709 GGTTTT---TTTT----A
s panTro5.chr9                  41867321 14 + 116767853 GGTTTTATTTTTT----A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834867 13 + 205426864 GGTTTT---TTTT--AAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244349 15 +    245036 GGTTTT---TTTTTTAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113944 14 -  86207423 TGTTGTTTTTTTT----A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269656 11 - 204787373 tttttt---tttt----t
i rheMac8.chr2                 I 13 C 0
s macFas5.chr2                    168863 11 - 192460366 tttttt---tttt----t
i macFas5.chr2                 I 13 C 0
s macNem1.NW_012010856v1          188354 11 -  11645122 TTTTTT---TTTT----T
i macNem1.NW_012010856v1       I 7 C 0
s cerAty1.NW_012001605v1          173569 11 -   6739814 tttttt---tttt----t
i cerAty1.NW_012001605v1       I 15 C 0
s chlSab2.chr22                    64064 11 - 101219884 GGTTTT---TTTT----T
i chlSab2.chr22                I 152 C 0
s manLeu1.NW_012099043v1          185753 11 -    785044 tttttt---tttt----t
i manLeu1.NW_012099043v1       I 15 C 0
s colAng1.NW_012123820v1           74854 11 -  10971483 TTTTTT---TTTT----T
i colAng1.NW_012123820v1       I 4 C 0
s aotNan1.NW_018487195v1         4129548 10 -   9889416 -GTCCT---TTTT----T
i aotNan1.NW_018487195v1       C 0 I 1
s otoGar3.GL873528              20756112 11 +  38779656 TTTTTG---TTTT----A
i otoGar3.GL873528             I 10 C 0
s dasNov3.JH568778               6691148  9 +   6883506 -TTTTG---TTTT-----
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e cebCap1.NW_016107322v1         7661169 32 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=177393.000000
s hg38.chr14_GL000009v2_random    177267 19 +    201709 AGGTAGTACTTCAGAAATA
s panTro5.chr9                  41867335 19 + 116767853 AGGTAGTACTTCAGAAATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834880 19 + 205426864 AGGTAGTACTTCAGAAATA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244364 19 +    245036 AGGTAGTACTTCAGAAATA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113958 19 -  86207423 AGGTAGTACTTCAGAAATA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269667 19 - 204787373 AGGTAGTACTTCAGAAATA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168874 19 - 192460366 AGGTAGTACTTCAGAAATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188365 19 -  11645122 AGGTAGTACTTCAGAAATA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173580 19 -   6739814 AGGTAGTACTTCAGAAATA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64075 19 - 101219884 AGGTAGTACTTCAGAAATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185764 19 -    785044 AGGTAGTACTTCAGAAATA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74865 19 -  10971483 AGGTAGTACTTCAGAAATA
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661201 19 +  14377064 AGGAAACACTTCAGAAATA
i cebCap1.NW_016107322v1       I 32 C 0
s aotNan1.NW_018487195v1         4129559 19 -   9889416 AGGAAATACTTCAGAAATA
i aotNan1.NW_018487195v1       I 1 C 0
s otoGar3.GL873528              20756123 18 +  38779656 -GGACATACTTCAGAAAAG
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6691157 19 +   6883506 AGGAAGTATGTCAGAAAAG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e micMur3.chr31                 30872440 5410 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=448226.000000
s hg38.chr14_GL000009v2_random    177286 55 +    201709 TTTATGATACTTAA----TTTTTAAAAATTAACTCTAAAAGAATCTTGAAATGTCTGTT
s panTro5.chr9                  41867354 55 + 116767853 TTTGTGATACTTAA----TTTTTAAAAATTAACTCTAAAAGAATCTTGAAATGTCTGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834899 55 + 205426864 TTTGTGATACTTAA----TTTTTAAAAATTAACTCCAAAAGAATCTTGAAATGTCTCTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244383 54 +    245036 TTTGTGATACTTAA----TTTTTAAAAATTAA-TCTAAAAGAATCTTGAAATGTCTCTT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42113977 55 -  86207423 TTTGTGATACTTAA----TTTTTAAAAATTCACTCTAAAAGAATCTTGAAATGTCTCTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269686 55 - 204787373 TTTGTGATACTTAA----TTTCTAAAAATTCATTCTAGAAGGCTCTTGAAATGTCTCTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168893 55 - 192460366 TTTGTGACACTTAA----TTTCTAAAAATTCACTCTAGAAGGCTCTTGAAATGTCTCTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188384 55 -  11645122 TTTGTGATACTTAA----TTTCTAAAAATTCATTCTAGAAGGCTCTTGAAATGTCTCTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173599 55 -   6739814 TTTGTGACACTTAA----TTTCTAAAAATTCACTCTAGAAGGCTCTTGAAATGTCTCTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64094 55 - 101219884 TTTGTGACACTTAA----TTTCTAAAAATTCACTCCAGGAGGCTCTTGAAATGTCTCTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185783 55 -    785044 TTTGTGACACTTAA----TTTCTAAAAATTCACTCTAGAAGGCTCTTGAAATGTCTCTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74884 53 -  10971483 TTTGTGACACT--A----CTTCTAAAAACTCACTCTAGAAGGCTCTTGAAATATCTCTT
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661220 55 +  14377064 TTTGTGACACTTCG----TTTTTAAAAATTCACTTTCAAAGACACCTGAAAAATCTCTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129578 55 -   9889416 TTTGTGATACTTAG----TTTTTCAAAATTCATTCTAAAAGACACCTGAAAAATCTCTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30877850 55 -  47401472 TTTGTGATATTTGA----TTTTTAAAAATTTACTCAAAAAGACTCCTTAAAAGTCTCTT
i micMur3.chr31                I 5410 C 0
s otoGar3.GL873528              20756141 51 +  38779656 TTTGTGATCCTTGA----TTTTCAAGAATTT----TGAACAACTTCTTAAAAACCTCTT
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6691176 54 +   6883506 --TTTGATAATTGATTTTTTTTTCTTAACTCATTCTAAAAG--TCCTGAAAAATCTCT-
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22703076 1166 -  98207768 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=233484.000000
s hg38.chr14_GL000009v2_random    177341 19 +    201709 TAATAAAATAGGACACAAA
s panTro5.chr9                  41867409 19 + 116767853 TAATGAAATAGGACATAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834954 19 + 205426864 TAATGAAATAGGACATAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244437 19 +    245036 TAATGAAATAGGACATAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114032 19 -  86207423 TAATGAAATAGGACATAAA
i nomLeu3.chr21                C 0 I 160
s rheMac8.chr2                 204269741 19 - 204787373 TAATGAAATAGAACATAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168948 19 - 192460366 TAATGAAATAGGACATAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188439 19 -  11645122 TAATGAAATAGAACATAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173654 19 -   6739814 TAATGAAATAGGACATAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64149 19 - 101219884 TAATGAAATAGGACACAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185838 19 -    785044 TAATGAAATAGGACATAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74937 19 -  10971483 TAATGAAATAGGACATAAA
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661275 19 +  14377064 TAGTGAAATAGGACATAAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129633 19 -   9889416 TAATGAAATAGGACATAAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30877905 19 -  47401472 TGATGAAATAGGACACAAA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20756192 19 +  38779656 CAGTGAAATAGGCCACAAA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22704242 19 -  98207768 TAATGAAATAGGACATAAA
i mm10.chr16                   I 1166 C 0
s dasNov3.JH568778               6691230 19 +   6883506 TAATGGAAGAGAACACCAA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=204405.000000
s hg38.chr14_GL000009v2_random    177360 25 +    201709 TACTGGTCACATTAGTG--AAAAATAT
s panTro5.chr9                  41867428 25 + 116767853 TACTGGTCACATTAATG--AAAAATAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834973 25 + 205426864 TACTGGTCACATTAGTG--AAAAACAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244456 25 +    245036 TACTGGTCACATTAGTG--AAAAATAT
i gorGor5.CYUI01000160v1       C 0 C 0
s rheMac8.chr2                 204269760 25 - 204787373 TGCTGATCACGTTAGTG--AAAAATAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168967 25 - 192460366 TGCTGATCACGTTAGTG--AAAAATAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188458 25 -  11645122 TGCTGATCACGTTAGTG--AAAAATAC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173673 25 -   6739814 TGCTGATCACGTTAGTG--AAAAGTAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64168 25 - 101219884 TGCTGATCACGTTAGTG--AAAAATAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185857 25 -    785044 TGCTGATCACGTTAGTG--AAAAATAC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74956 25 -  10971483 TATTGGTCACATTAGTG--AAAAATAC
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661294 25 +  14377064 TACTGGTCACATTACTG--AAAAGTAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129652 24 -   9889416 T-CTGGTCACATTACTG--AAAAGTAT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30877924 25 -  47401472 TAATTGTCACATTAATG--TAAAATAT
i micMur3.chr31                C 0 I 1880
s otoGar3.GL873528              20756211 25 +  38779656 TGATTGTCACATTAGCA--TAAAATAT
i otoGar3.GL873528             C 0 I 8
s mm10.chr16                    22704261 27 -  98207768 TAATTGTCACATTTATAGTAAAAATGT
i mm10.chr16                   C 0 C 0
s dasNov3.JH568778               6691249 25 +   6883506 TGGCTGTCACATTAGTG--CAAAATAT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e nomLeu3.chr21                 42114051 160 -  86207423 I

a score=496960.000000
s hg38.chr14_GL000009v2_random    177385  84 +    201709 -------------------------TTGTTTA--AAATTAAAATATCTGCAGC---------A-ATCATGTAGATATTAATA------ATTTTT--------TAAA------------GAATGACA---TCTTCAAAATATAACTGTTCT---------
s panTro5.chr9                  41867453  83 + 116767853 -------------------------TTGTTTA--AAATTAAAATATCTGCAGC---------A-ATCCTGTAGATATTAATA------ATTTTT---------AAA------------GAATGACA---TCTTCAAAATATAAATGTTCT---------
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77834998  85 + 205426864 -------------------------GTGTTTA--AAATTAAAATACCTGTAGC---------A-ATCCTGTAAATATTAATA------ATTTTT-------TTAAA------------GAATGACA---TCTTCAAAATATAAATGTTCT---------
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244481  84 +    245036 -------------------------GTGTTTA--AAATTAAAATACCTGTAGC---------A-ATCCTGTAAATATTAATA------TTTTTT--------TAAA------------GAATGACA---TCTTCAAAATATAAATGTTCT---------
i gorGor5.CYUI01000160v1       C 0 C 0
s rheMac8.chr2                 204269785  84 - 204787373 -------------------------GTGTTTA--AAATTAAAATCTCTGCAGC---------A-ATCCTATAAATATTAATA------TTTTTT--------TAAA------------TAATGACA---TCTTCAAAATATAAATGTTAT---------
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    168992  84 - 192460366 -------------------------GTGTTTA--AAATTAAAATCTCTGCAGC---------A-ATCCTATAAATATTAATA------TATTTT--------TAAA------------TAATGACA---TCTTCAAAATATAAATGTTAT---------
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188483  84 -  11645122 -------------------------GTGTTTA--AAATTAAAATCTCTGCAGC---------A-ATCCTATAAATATTAATA------TTTTTT--------AAAA------------TAATGACA---TCTTCAAAATATAAATGTTAT---------
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173698  84 -   6739814 -------------------------GTGTTTA--AAATTAAAATCTCTGCAGC---------A-ATCCTATAAATATTACTA------TTTTTT--------TAAA------------TAATGACA---TCTTCAAAATATAAATGTTAT---------
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64193  82 - 101219884 -------------------------GTGTTTA--AAATTAAAATCTCTGCAGC---------A-ATCCTATAAATATTA--A------TTTTTT--------TAAA------------TAATGACA---TCTTCAAAATATAAATGTTAT---------
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          185882  80 -    785044 -------------------------GTGTTTA--AAATTAAAATCTCTGCAGC---------A-ATCCTATAAATATTACTA------TTTTTT--------TAAA------------TAATGACA---TCTTCAAAAT----ATGTTAT---------
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           74981  82 -  10971483 -------------------------ATGTTTA--AAATTAAAATCTCTGCAGC---------A-ATCCTATAAATATTA--A------TTTTTT--------AAAA------------TAATGACA---ACTTCAAAATATAAATGTTAT---------
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661319  83 +  14377064 -------------------------GTGTTTA--AAA-TAAAATCTTTGCAGC---------A-ATCCTGTAAGCATTACTA------ATTTTT--------TAAA------------GAATGACA---TATTCAAAATATAAATGTTAC---------
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129676  78 -   9889416 -------------------------GTGTT--------TAAAATCTCTGCAGC---------A-ATCCTATAAGCATTACTA------ATTTTT--------TAAA------------GAATGACA---TAATCAAAATATAAATGTTAC---------
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20756244  93 +  38779656 -------------------------ACAATTC--AAATTAGAATCTCTACAGG---------AGATCCTGTTTGCattaata------attttaaataattataaa------------aaatGAGA---TTCTCAAAACATAAATATTAT---------
i otoGar3.GL873528             I 8 C 0
s mm10.chr16                    22704288  87 -  98207768 -------------------------ATATTTATTGATTTAAACAAACTACCAA---------A-ATCTGGTCAACTTAAATA------ATAATT-------ATAGA------------AAATGACC---TCTCCCAAATACAAATACTCT---------
i mm10.chr16                   C 0 C 0
s dasNov3.JH568778               6691274 148 +   6883506 TTATGAAAGAGACAAAACATTATCTGTTATTG--AAATTAGAATATTAGACGCTGAAATGGGA-ATTCTGTCAGCATTAGTAATGTACATTTTT--------TAAAACTCCAAAATATGAATATCACAGCCTTCAAATTAAAAATATTTGTATTGTTTT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30877949 1880 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836  18 -  13128814 I
e nomLeu3.chr21                 42114051 160 -  86207423 I

a score=126988.000000
s hg38.chr14_GL000009v2_random    177469 30 +    201709 -------------AAACT------------AA---------------TATGTC----------------------------------------------------TCC-------attaa-----tacatatag
s panTro5.chr9                  41867536 42 + 116767853 -------------AAACTTATAATCAGTtaaa---------------tatgtc----------------------------------------------------tct-------attaa-----tacatatag
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835083 42 + 205426864 -------------AAACTTATAATTAGTTAAA---------------TATGTC----------------------------------------------------TCT-------ATTAG-----TACATATAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244565 42 +    245036 -------------AAACTTATAATTAGTTAAA---------------TATGTC----------------------------------------------------TCT-------ATTAG-----TACATATAG
i gorGor5.CYUI01000160v1       C 0 C 0
s rheMac8.chr2                 204269869 38 - 204787373 -------------AAACTTATAATCGGTTAAA---------------TATGCC----------------------------------------------------TCT-------ATTA---------AAATAG
i rheMac8.chr2                 C 0 I 1
s macFas5.chr2                    169076 38 - 192460366 -------------AAACTTATAATTGGTTAAA---------------TATGCC----------------------------------------------------TCT-------ATTA---------AAATAG
i macFas5.chr2                 C 0 I 1
s macNem1.NW_012010856v1          188567 38 -  11645122 -------------AAACTTATAATCGGTTAAA---------------TATGCC----------------------------------------------------TCT-------ATTA---------AAATAG
i macNem1.NW_012010856v1       C 0 I 1
s cerAty1.NW_012001605v1          173782 38 -   6739814 -------------AAACTTATAATCGGTTAAA---------------TATGCC----------------------------------------------------TCT-------ATTA---------AAATAG
i cerAty1.NW_012001605v1       C 0 I 1
s chlSab2.chr22                    64275 38 - 101219884 -------------AAACTTATAATCGGTTAAA---------------TATGCC----------------------------------------------------TCT-------ATTG---------AAATAG
i chlSab2.chr22                C 0 I 1
s manLeu1.NW_012099043v1          185962 38 -    785044 -------------AAACTTATAATCGGTTAAA---------------TATGCC----------------------------------------------------TCT-------ATTA---------AAATAG
i manLeu1.NW_012099043v1       C 0 I 1
s colAng1.NW_012123820v1           75063 37 -  10971483 -------------AAATTTATAATTGGTTAAA---------------TATGCC----------------------------------------------------TCT-------ATTA---------AAATA-
i colAng1.NW_012123820v1       C 0 I 2
s cebCap1.NW_016107322v1         7661402 38 +  14377064 -------------AAGCTTATAATCAGTTAAA---------------TATGTC----------------------------------------------------TTT-------ATTA---------AAATAG
i cebCap1.NW_016107322v1       C 0 I 1
s aotNan1.NW_018487195v1         4129754 38 -   9889416 -------------AAGCTTATAATCAGTTAAA---------------TATGTC----------------------------------------------------TTT-------ATTA---------AAATAG
i aotNan1.NW_018487195v1       C 0 I 1
s tarSyr2.KE939969v1               12409 34 -    345090 -------------------GTCATTTTGTACC---------------TCTGGT----------------------------------------------------TTA-------ACTA-------AAAAATAA
i tarSyr2.KE939969v1           N 0 I 8
s otoGar3.GL873528              20756337 97 +  38779656 -------------AATCTTGTAATCAGTTAAAGAATAAT--------TATACTACTTGACATCTTAACTGCTGAATAAAATTATCTAAATTCTTTGATACCTCTGTTT-------ATTA---------AAATAG
i otoGar3.GL873528             C 0 I 1
s mm10.chr16                    22704375 69 -  98207768 -------------AAATGCATAATTAGTTAGAAGTTAACTTGCACTGGATATT----------------------------------------------------TTTAGGATTGATTAAAAACTTCCAAGTAT
i mm10.chr16                   C 0 I 13
s dasNov3.JH568778               6691422 61 +   6883506 ATATTTTAACTTGAAAATAACAATTTTTCCCA---------------TATTTT--------------------------GATATCTGAATTTA------------CTT-------ATTA---------AA----
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30877949 1880 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e nomLeu3.chr21                 42114051 160 -  86207423 I

a score=58279.000000
s hg38.chr14_GL000009v2_random    177499 11 +    201709 -----atacatataaa
s panTro5.chr9                  41867578 11 + 116767853 -----atacatatatc
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835125 11 + 205426864 -----ATATATATATC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244607 11 +    245036 -----ATATAGATATC
i gorGor5.CYUI01000160v1       C 0 C 0
s rheMac8.chr2                 204269908 11 - 204787373 -----ATACATAGATC
i rheMac8.chr2                 I 1 C 0
s macFas5.chr2                    169115 11 - 192460366 -----ATACATAGATC
i macFas5.chr2                 I 1 C 0
s macNem1.NW_012010856v1          188606 11 -  11645122 -----ATACATAGATC
i macNem1.NW_012010856v1       I 1 C 0
s cerAty1.NW_012001605v1          173821 11 -   6739814 -----ATACATAGATC
i cerAty1.NW_012001605v1       I 1 C 0
s chlSab2.chr22                    64314 11 - 101219884 -----ATACATAGATC
i chlSab2.chr22                I 1 C 0
s manLeu1.NW_012099043v1          186001 11 -    785044 -----ATACATAGATC
i manLeu1.NW_012099043v1       I 1 C 0
s colAng1.NW_012123820v1           75102 11 -  10971483 -----ATACATAGATC
i colAng1.NW_012123820v1       I 2 C 0
s cebCap1.NW_016107322v1         7661441 11 +  14377064 -----ATAAATATATC
i cebCap1.NW_016107322v1       I 1 C 0
s aotNan1.NW_018487195v1         4129793 11 -   9889416 -----ATAAATATATC
i aotNan1.NW_018487195v1       I 1 C 0
s tarSyr2.KE939969v1               12451 11 -    345090 -----ATTCAGATAAA
i tarSyr2.KE939969v1           I 8 N 0
s otoGar3.GL873528              20756435 11 +  38779656 -----ATAAATATGTC
i otoGar3.GL873528             I 1 C 0
s mm10.chr16                    22704457 11 -  98207768 -----ATGAAGATAAA
i mm10.chr16                   I 13 I 5
s dasNov3.JH568778               6691483 12 +   6883506 ATGTAATTAATA----
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30877949 1880 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e nomLeu3.chr21                 42114051 160 -  86207423 I

a score=640909.000000
s hg38.chr14_GL000009v2_random    177510  78 +    201709 taaataaatTTGAAG---A---CTTCAAATTCCAGGTACAATATA--A-TTTTTTTCTATCCTGTGATTTGTCATTCAGGATT-------------------TTGT
s panTro5.chr9                  41867589  78 + 116767853 taaataaatTTGAAG---A---CTTCAAATTCCAGGTACAATATA--A-TTTttttctatcctgtgatttgtcattcagtatt-------------------ttgt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835136  78 + 205426864 TAAATAAATTTGAAG---A---TTTCAAATTCCAGGTACAATATA--A-TTTTTTTCTATCCTGTGATTTGTCATTCAGGATT-------------------TTGT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244618  78 +    245036 TAAATAAATTTGAAG---A---TTTCAAATTCCAGGTACAATATA--A-ATTTTTTCTATCCTGTGATTTGTCATTCAGGATT-------------------TTGT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114211  77 -  86207423 TAAATATATTTGAAG---A---CTTCAAATTCCAGGTACAATATA--A--TATTTTCTATCCTGTGATTTGTCATTCAGGATT-------------------TTGT
i nomLeu3.chr21                I 160 C 0
s rheMac8.chr2                 204269919  77 - 204787373 TAAATAAATTTGAAG---A---CTTCAAATTCCAGGTACAATATA--A--TTTTTTCTATACTGTGATTTGTCATTCAGGATT-------------------TTGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169126  77 - 192460366 TAAATAAATTTGAAG---A---CTTCAAATTCCAGGTACAATATA--A--TTTTTTCTATACTGTGATTTGTCATTCAGGATT-------------------TTGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188617  77 -  11645122 TAAATAAATTTGAAG---A---CTTCAAATTCCAGGTACAATATA--A--TTTTTTCTATACTGTGATTTGTCATTCAGGATT-------------------TTGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173832  77 -   6739814 TAAATAAATTTGAAG---A---CTTCAAATTCCAGGTACAATGTA--A--TTTTTTCTATACTGTGATTCGTCATTCAGGATT-------------------TTGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64325  77 - 101219884 TAAATAAATTTGAAG---A---CTTCAAATTCCAGGTACAATATA--A--TTTTTTCTATACTGTGATTTGTCATTCAGGATT-------------------TTGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186012  77 -    785044 TAAATAAATTTGAAG---A---CTTCAAATTCCAGGTACAATATA--A--TTTTTTCTATACTGTGATTCGTCATTCAGGATT-------------------TTGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75113  77 -  10971483 TAAATAAATTTGAAG---A---CTTCAAATTCCAGGTACAATGTA--A--TTTTTTCTATACTGTGATTTGTCATTCAGGATT-------------------TTGT
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661452  79 +  14377064 TAAATAAATTTGAAG---A---CTTAGAATTTCAGGTACAATGTATTT-TTTTTTTCTATACTGTGATTTTTCATTTAGGA-T-------------------TTGT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129804  79 -   9889416 TAAATAAATTTGAAG---A---CTTAGAATTTCAGGTACAATATA-TA-TTTTTTTCTATACTGTGATTTGTCATTTAGGATT-------------------TTGT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20756446 101 +  38779656 TAAATAAATGTGAAGACAA---CTTCCAATTCCAGGTGTGACACA--ATTTTTTTTCTACACTGTGACTTGTTATATAGGATTAAGAAATTTGgggtggcgcctgt
i otoGar3.GL873528             C 0 I 102
s mm10.chr16                    22704473  59 -  98207768 CCAATAGACATGAAG---ATAGCTTCATCTTCTAGTTACAATCTA--C--TTTTTTC------ACAACTTAC----------------------------------
i mm10.chr16                   I 5 C 0
s dasNov3.JH568778               6691495  80 +   6883506 TGCATAAATGTGAAG---ACACCTTCAAATTCCAGATGTGCTATA--T--ATGCATCTATGTTTCAACTTGCCATGCAGGATT-------------------ATAT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30877949 1880 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836  18 -  13128814 I

a score=61020.000000
s hg38.chr14_GL000009v2_random    177588 6 +    201709 AATTTG
s panTro5.chr9                  41867667 6 + 116767853 aatttg
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835214 6 + 205426864 AATTTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244696 6 +    245036 AATTTG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114288 6 -  86207423 AATTTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204269996 6 - 204787373 AATTTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169203 6 - 192460366 AATTTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188694 6 -  11645122 AATTTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173909 6 -   6739814 AATTTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64402 6 - 101219884 AATTTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186089 6 -    785044 AATTTG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75190 6 -  10971483 AATTTG
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661531 6 +  14377064 AATTTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129883 6 -   9889416 AATTTG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20756649 6 +  38779656 AATTTG
i otoGar3.GL873528             I 102 C 0
s mm10.chr16                    22704532 2 -  98207768 ----TT
i mm10.chr16                   C 0 C 0
s dasNov3.JH568778               6691575 6 +   6883506 AATTTG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30877949 1880 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792242 548 -  39895921 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=248581.000000
s hg38.chr14_GL000009v2_random    177594 24 +    201709 AACAGAA--ATATTTTGCCCTAACCC
s panTro5.chr9                  41867673 24 + 116767853 AACAGAA--ATATTTTGCCCTAACCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835220 24 + 205426864 AACAGTA--ATATTTTGCCCTAACCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244702 24 +    245036 AACAGTA--ATATTTTGCCCTAACCA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114294 24 -  86207423 AACAGAA--ATATTTTGCCCTAACCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270002 24 - 204787373 AACAGAA--ATACTTTGCCCTAACCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169209 24 - 192460366 AACAGAA--ATACTTTGCCCTAACCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188700 24 -  11645122 AACAGAA--ATACTTTGCCCTAACCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173915 24 -   6739814 AACAGAA--ATACTTTGCCCTAACCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64408 24 - 101219884 AACAGAA--ATACTTTGCCCTAACCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186095 24 -    785044 AACAGAA--ATACTTTGCCCTAACCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75196 22 -  10971483 AACAGAA--ATATTTTGCTCTAAC--
i colAng1.NW_012123820v1       C 0 I 1
s cebCap1.NW_016107322v1         7661537 24 +  14377064 AGCAGAA--ATATTTTGCCTTAACCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129889 24 -   9889416 AGCAGAA--ATATTTTGACTTAACCA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20756655 24 +  38779656 AACAGAA--AAATTTTCCCTTAATCA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22704534 24 -  98207768 AGCAGAA--ACATTTTGCTTCAACCA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28792790 24 -  39895921 aaaaaaa--aAAATTTGCCTTAACTC
i canFam3.chr31                I 548 C 0
s dasNov3.JH568778               6691581 26 +   6883506 ACCAGAATCATATTTTGCCTTAACCC
i dasNov3.JH568778             C 0 I 1
e micMur3.chr31                 30877949 1880 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=10035.000000
s hg38.chr14_GL000009v2_random    177618 1 +    201709 C
s panTro5.chr9                  41867697 1 + 116767853 C
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835244 1 + 205426864 C
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244726 1 +    245036 C
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114318 1 -  86207423 C
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270026 1 - 204787373 C
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169233 1 - 192460366 C
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188724 1 -  11645122 C
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173939 1 -   6739814 C
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64432 1 - 101219884 C
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186119 1 -    785044 C
i manLeu1.NW_012099043v1       C 0 C 0
s cebCap1.NW_016107322v1         7661561 1 +  14377064 C
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129913 1 -   9889416 C
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20756679 1 +  38779656 C
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22704558 1 -  98207768 T
i mm10.chr16                   C 0 C 0
s dasNov3.JH568778               6691608 1 +   6883506 C
i dasNov3.JH568778             I 1 C 0
e micMur3.chr31                 30877949 1880 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28792814 0 -  39895921 C
e colAng1.NW_012123820v1           75218 1 -  10971483 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=288651.000000
s hg38.chr14_GL000009v2_random    177619 48 +    201709 ATGTCTGTCTTTTCTCTTACCTAAAAATATTATTTTATGTAAAATTGT
s panTro5.chr9                  41867698 48 + 116767853 ATGTCTGTCTTTTCTCTTACCTAGAAATGTTATTTTATGCAAAATTGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835245 48 + 205426864 ATGCCTGTCTTTTCTCTTACCTAAAAATGTTATTTTATGAAAAATTGT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244727 48 +    245036 ATGTCGGTCTTTTCTTTTACCTAAAAATGTTATTTTATGAAAAATTGT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114319 44 -  86207423 AT----GTCTTTTCTCTTACCTAAAAATGTTATTTTATGAAAAATTGT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270027 46 - 204787373 --GTCTGTCTTTTCTCTTACCTAAAAATGATATTTTATGAAAAATTGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169234 46 - 192460366 --GTCTGTCTTTTCTCTTACCTAAAAATGATATTTTATGAAAAATTGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188725 46 -  11645122 --GTCTGTCTTTTCTCTTACCTAAAAATGATATTTTATGAAAAATTGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          173940 46 -   6739814 --GTCTGTCTTTTGTCTTACCTAAAAATGATATTTTATGAAAAATTGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64433 48 - 101219884 ATGTCTGCCTTTTCTCTTACCTAAAAATGATATTTTATGAAAAATTGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186120 46 -    785044 --GTCTGTCTTTTCTCTTACCTAAAAATGATATTTTATGAAAAATTGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75219 48 -  10971483 ACGTCTGTCTTTTCTCTTACCTAAAAATGATATTTTATGAAAAATTGT
i colAng1.NW_012123820v1       I 1 C 0
s cebCap1.NW_016107322v1         7661562 44 +  14377064 --ATCTG--TATTCTTTTACCTAAAAATGGTATTTCATGAAAAATTGT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129914 44 -   9889416 --ATCTG--TATTCTCTTACCTAAAAATGATATTTCATGAAAAATTGT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20756680 44 +  38779656 --ATCT-TGTTTTCTTTCATCTGAAAA-ATTATTCCATAAAATATCAG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22704559 11 -  98207768 --------------------------ATGCTGATGTA-----------
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28792814 45 -  39895921 -ATAATATCATTTCTTTTATGTGCAAAT-TTATCCCATG-ATAATTGC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6691609 19 +   6883506 AATGCCATTTCTTTTCTTG-----------------------------
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30877949 1880 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=1162117.000000
s hg38.chr14_GL000009v2_random    177667 119 +    201709 TTTAAAGGTCAGTTTGCACGTTTGAAAAGCATCT-TGTACAATGTTACA-----TAATA---TATTGCATATTTGGTTACATTGTTTT-AACTGTGTAAATATGGTTTAAATCTGTAATGCTCTTTAGT
s panTro5.chr9                  41867746 118 + 116767853 TTTAAAGGTCAGTTTGCATGTTTGAAA-GCATCT-TGTAGAATGTTACA-----TAATA---TATTGCATATTTGGTTACCTTGTTTT-AACTGTGTAAATATGGTTTAAATCTATGATGCTCTTTAGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835293 119 + 205426864 TTTAAAGGTCAGTTTGCATGTTTGAAAAGCATCT-TGTACAATGTTACA-----TAATA---TATTGCATATTTGGTTATATTGTTTT-AACTGTGTAAATATGGTTTAAATCTATGATGCTCTTTAAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244775 120 +    245036 TTTAAAGGTCAGTTTGCATGTTTGAAAAGCATCT-TGTACAATGTTACA-----TAATA---TATTGCATATTTGGTTATATTGTTTTAAACTGTGTAAATATGGTTTAAATCTATGATGCTCTTTAAT
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114363 118 -  86207423 TTTAAAGGTCAGTTTGCATGTTTGAAA-GCATCT-TGTACAATGTTACA-----TAACA---TTTTTCATATTTGGCTGTGTTGTTTT-AACTGTGTAAATATGGTTTAAATCTATGATACTCTTTAGT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270073 119 - 204787373 TTTAAAGATCAGTTTGTATGTTTGAAAACCATCT-TGTACAATGTTACA-----CAATA---TGTTGCATATTTGATTATATTGTTTT-AACTATGTAAATATGGTTTCAATCTATGATGTTCTTTAGT
i rheMac8.chr2                 C 0 I 3
s macFas5.chr2                    169280 119 - 192460366 TTTAAAGGTCAGTTTGTATGTTTGAAAACCATCT-TGTACAATGTTACA-----CAATA---TGTTGCATATTTGGTTATATTGTTTT-AACTATGTAAATATGGTTTGAATCTATGATGTTCTTTAGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188771 119 -  11645122 TTTAAAGATCAGTTTGTATGTTTGAAAACCATCT-TGTACAATGTTACA-----CAATA---TGTTGCATATTTGATTATATTGTTTT-AACTATGTAAATATGGTTTCAATCTATGATGTTCTTTAGT
i macNem1.NW_012010856v1       C 0 I 3
s cerAty1.NW_012001605v1          173986 116 -   6739814 TTTAAAGGTCAGTTTGTATGTTTG---ACCATCT-TGTACAATGTTACA-----CAATA---TGTTGCATATTTGGTTATATTGTTTT-AACTATGTAAATATGGTTTAAATCTATGATGTTCTTTAGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64481 119 - 101219884 TTTAAAGGTCAGTTTGTATGTTTGAAAACCATCT-TGTACAATGTTACA-----CAATA---TGTTGCATATTTGGTTATATTGTTTT-AACTATGTAAATATGGTTTAAATCTATGATGTTCTTTAGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186166 119 -    785044 TTTAAAGGTCAGTTTGTATGTTTGAAAACCATCT-TGTACAATGTTACA-----CAATA---TGTTGCATATTTGGTTATATTGTTTT-AACTATGTAAATATGGTTTAAATCTATGATGTTCTTTAGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75267 119 -  10971483 TTTAAAGGTCAGTCTGTATGTTTGAAAAGCATCT-TGTACAATGTTATA-----CAATA---TGTTGCATATTTGGTTATATCGTTTT-AACTATGTAAATATGGTTTAAATCTATGATGTTCTTTAGT
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661606 118 +  14377064 TTTAA----CAGTTTGGATGTTTGTAAAGCATCT-TGTACAATGTCACA-----TAATATATTATTGCATATTTCATTATATTGTTTT-AACTATGTAAATATGGTAGAAATCTATGATCTTCTTTAGT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4129958 119 -   9889416 TTTAATGGTCAGTTTGGATGTTTGTAAAGCATCT-TGTACAACATCACA-----TAATA---TATTGCATATTTGATTATATTGTTTT-AACTATGTAAATATGGTAGAAATCTATGATCTTCTTTAGT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30879829 118 -  47401472 tttaaaGGTCAATTTTCATGTTTGAAA-GCATTC-TGTAAAACATTGCA-----TAATA---TATTTCATATTTGATTATATTGTTTT-AACTGTGTAAATATTCTTTAAATCTATGATGTTCTTTAGT
i micMur3.chr31                I 1880 C 0
s otoGar3.GL873528              20756724 102 +  38779656 TTTAAAGGTCAGTTTGCATGTTTGAAA-----------AGAACATGGCAAAATGTCata---tattctataattaatt------tttt-aaatatgtaaata---tttaaatCTATAA---TCTTCAGT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22704570 113 -  98207768 TTTTAAGGTCAGGATACA--TTTGTAAAGGGCCTAGGTTCAACACCACA-----CAATT------TCAACATTTCATTATATTATTTT-AGCAATGTAAACA--GTTTATATTTACAATGCTATTTTAT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28792859 115 -  39895921 TTTAAAGATCAATTTGAATGTCAGAAAAACATTT-TGTACAGCATCACA-----CTATA--ACATCCAATATTAGATTATA-----TT-AACTATGTAAATACTGTTTAAATCTATGATGTTCTTTAGT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6691628  88 +   6883506 ---------------------------GGCATTT-TGCACTTTGTCAGG-----TGATA---CATTTAATATTCAGCTATA----TTT-AACTATGTGAATACTGTAGAAAGCTATGATGTTCTTTAGT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e saiBol1.JH378168              10930836  18 -  13128814 I

a score=152576.000000
s hg38.chr14_GL000009v2_random    177786 17 +    201709 GCTGATCATGATGCAAA
s panTro5.chr9                  41867864 17 + 116767853 GCTGATCATGATGCAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835412 17 + 205426864 GCTGATCATGGTGCAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244895 17 +    245036 GCTGATCATGGTGCAAA
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114481 17 -  86207423 GCTGATCATGAGGCAAA
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    169399 17 - 192460366 GCCGATCATGATGCAAA
i macFas5.chr2                 C 0 C 0
s cerAty1.NW_012001605v1          174102 17 -   6739814 GCTGATCATGATGCACA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64600 17 - 101219884 GCCGATCATGATGCAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186285 17 -    785044 GCTGATCATGATGCAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75386 17 -  10971483 GCCGATCATGATGCAAA
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661724 17 +  14377064 GCTGATTATGATGCAAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130077 17 -   9889416 GCTGATTATGATGCAAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30879947 17 -  47401472 GTTGATTATGATATAAA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20756826 17 +  38779656 GTTGACTGTGATACAGA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22704683 17 -  98207768 GCTGATCTTGATGCAAA
i mm10.chr16                   C 0 I 587
s canFam3.chr31                 28792974 17 -  39895921 ATTGAGGATAAAACAAA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6691716 17 +   6883506 GTTGATTGTGAAGCAAA
i dasNov3.JH568778             C 0 I 1
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204270192  3 - 204787373 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e macNem1.NW_012010856v1          188890  3 -  11645122 I

a score=-5426.000000
s hg38.chr14_GL000009v2_random    177803 1 +    201709 -T
s panTro5.chr9                  41867881 1 + 116767853 -G
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835429 1 + 205426864 -G
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244912 1 +    245036 -G
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114498 1 -  86207423 -G
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    169416 1 - 192460366 -G
i macFas5.chr2                 C 0 C 0
s cerAty1.NW_012001605v1          174119 1 -   6739814 -G
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64617 1 - 101219884 -G
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186302 1 -    785044 -G
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75403 1 -  10971483 -G
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661741 1 +  14377064 -A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130094 1 -   9889416 -A
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30879964 1 -  47401472 -A
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20756843 1 +  38779656 -A
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28792991 1 -  39895921 -A
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6691734 1 +   6883506 T-
i dasNov3.JH568778             I 1 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204270192 3 - 204787373 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e macNem1.NW_012010856v1          188890 3 -  11645122 I

a score=43442.000000
s hg38.chr14_GL000009v2_random    177804 5 +    201709 CAAAT
s panTro5.chr9                  41867882 5 + 116767853 CAAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835430 5 + 205426864 CAAAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244913 5 +    245036 CAAAC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114499 5 -  86207423 CAAAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270195 5 - 204787373 CAAAT
i rheMac8.chr2                 I 3 C 0
s macFas5.chr2                    169417 5 - 192460366 CAAAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188893 5 -  11645122 CAAAT
i macNem1.NW_012010856v1       I 3 C 0
s cerAty1.NW_012001605v1          174120 5 -   6739814 CAAGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64618 5 - 101219884 CAAAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186303 5 -    785044 CAAGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75404 5 -  10971483 CAAAT
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661742 4 +  14377064 CAAA-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130095 4 -   9889416 CAAA-
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30879965 5 -  47401472 CAAAT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20756844 5 +  38779656 CAAAT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28792992 5 -  39895921 CACAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6691735 5 +   6883506 CAAAT
i dasNov3.JH568778             C 0 I 16
e mm10.chr16                    22704700 587 -  98207768 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=181698.000000
s hg38.chr14_GL000009v2_random    177809 19 +    201709 TTATCTGTA-TAAAAGGCTC
s panTro5.chr9                  41867887 19 + 116767853 TTATCTGTA-TAAAAGTCTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835435 19 + 205426864 TTATCTGTA-TAAAAGGCTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244918 19 +    245036 TTATCTGTA-TAAAAGACTC
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114504 19 -  86207423 TTATCTGTA-TGAAAGGCTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270200 19 - 204787373 TTATCTGTA-TAAAAGGCTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169422 19 - 192460366 TTATCTGTA-TAAAAGGCTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188898 19 -  11645122 TTATCTGTA-TAAAAGGCTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174125 19 -   6739814 TTATCTGTA-TAAAAGGCTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64623 19 - 101219884 TTATCTGTA-TAAAAGGCTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186308 19 -    785044 TTATCTGTA-TAAAAGGCTC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75409 19 -  10971483 TTATCTGTA-TAAAAGCCTC
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661746 19 +  14377064 TTATCTGTA-TGAAAAGCTC
i cebCap1.NW_016107322v1       C 0 I 5
s aotNan1.NW_018487195v1         4130099 19 -   9889416 TTATCTGCA-TAAAAGGCTC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30879970 19 -  47401472 TTATCTGCA-TACTAGGCTC
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20756849 20 +  38779656 TTCTCTGTAGTACTAGTTTA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28792997 20 -  39895921 TTATCTGTAATAATGGACTC
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e dasNov3.JH568778               6691740 16 +   6883506 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=27448.000000
s hg38.chr14_GL000009v2_random    177828 3 +    201709 CTG
s panTro5.chr9                  41867906 3 + 116767853 CTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835454 3 + 205426864 CTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244937 3 +    245036 CTG
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114523 3 -  86207423 CTG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270219 3 - 204787373 CTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169441 3 - 192460366 CTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188917 3 -  11645122 CTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174144 3 -   6739814 CTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64642 3 - 101219884 CTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186327 3 -    785044 CTG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75428 3 -  10971483 CCG
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4130118 3 -   9889416 TTG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30879989 3 -  47401472 CTG
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20756869 3 +  38779656 CTA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28793017 3 -  39895921 TTG
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e dasNov3.JH568778               6691740 16 +   6883506 I
e cebCap1.NW_016107322v1         7661765 5 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=9555.000000
s hg38.chr14_GL000009v2_random    177831 1 +    201709 T
s panTro5.chr9                  41867909 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835457 1 + 205426864 T
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244940 1 +    245036 T
i gorGor5.CYUI01000160v1       C 0 C 0
s nomLeu3.chr21                 42114526 1 -  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270222 1 - 204787373 T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169444 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188920 1 -  11645122 T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174147 1 -   6739814 T
i cerAty1.NW_012001605v1       C 0 C 0
s manLeu1.NW_012099043v1          186330 1 -    785044 T
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75431 1 -  10971483 T
i colAng1.NW_012123820v1       C 0 C 0
s aotNan1.NW_018487195v1         4130121 1 -   9889416 T
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30879992 1 -  47401472 T
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20756872 1 +  38779656 T
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28793020 1 -  39895921 T
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e dasNov3.JH568778               6691740 16 +   6883506 I
e cebCap1.NW_016107322v1         7661765 5 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e chlSab2.chr22                    64645 0 - 101219884 C

a score=18366.000000
s hg38.chr14_GL000009v2_random    177832 3 +    201709 TAA
s panTro5.chr9                  41867910 3 + 116767853 TAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835458 3 + 205426864 TAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244941 3 +    245036 TAA
i gorGor5.CYUI01000160v1       C 0 C 0
s rheMac8.chr2                 204270223 3 - 204787373 TAA
i rheMac8.chr2                 C 0 I 1
s macNem1.NW_012010856v1          188921 3 -  11645122 TAA
i macNem1.NW_012010856v1       C 0 I 1
s cerAty1.NW_012001605v1          174148 3 -   6739814 TAA
i cerAty1.NW_012001605v1       C 0 I 1
s manLeu1.NW_012099043v1          186331 3 -    785044 TAA
i manLeu1.NW_012099043v1       C 0 I 1
s colAng1.NW_012123820v1           75432 3 -  10971483 TAA
i colAng1.NW_012123820v1       C 0 I 1
s aotNan1.NW_018487195v1         4130122 3 -   9889416 TAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30879993 3 -  47401472 TAA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20756873 3 +  38779656 TAA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28793021 3 -  39895921 TGG
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e dasNov3.JH568778               6691740 16 +   6883506 I
e cebCap1.NW_016107322v1         7661765 5 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e chlSab2.chr22                    64645 0 - 101219884 C
e macFas5.chr2                    169445 0 - 192460366 C
e nomLeu3.chr21                 42114527 0 -  86207423 C

a score=2548.000000
s hg38.chr14_GL000009v2_random    177835 1 +    201709 t
s panTro5.chr9                  41867913 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835461 1 + 205426864 t
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244944 1 +    245036 t
i gorGor5.CYUI01000160v1       C 0 C 0
s aotNan1.NW_018487195v1         4130125 1 -   9889416 T
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30879996 1 -  47401472 T
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20756876 1 +  38779656 T
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28793024 1 -  39895921 T
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204270226 1 - 204787373 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           75435 1 -  10971483 I
e dasNov3.JH568778               6691740 16 +   6883506 I
e cebCap1.NW_016107322v1         7661765 5 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e manLeu1.NW_012099043v1          186334 1 -    785044 I
e chlSab2.chr22                    64645 0 - 101219884 C
e cerAty1.NW_012001605v1          174151 1 -   6739814 I
e macNem1.NW_012010856v1          188924 1 -  11645122 I
e macFas5.chr2                    169445 0 - 192460366 C
e nomLeu3.chr21                 42114527 0 -  86207423 C

a score=1179.000000
s hg38.chr14_GL000009v2_random    177836 1 +    201709 t
s panTro5.chr9                  41867914 1 + 116767853 C
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835462 1 + 205426864 t
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244945 1 +    245036 t
i gorGor5.CYUI01000160v1       C 0 C 0
s micMur3.chr31                 30879997 1 -  47401472 T
i micMur3.chr31                C 0 I 30
s otoGar3.GL873528              20756877 1 +  38779656 T
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28793025 1 -  39895921 T
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204270226 1 - 204787373 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4130126 0 -   9889416 C
e colAng1.NW_012123820v1           75435 1 -  10971483 I
e dasNov3.JH568778               6691740 16 +   6883506 I
e cebCap1.NW_016107322v1         7661765 5 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e manLeu1.NW_012099043v1          186334 1 -    785044 I
e chlSab2.chr22                    64645 0 - 101219884 C
e cerAty1.NW_012001605v1          174151 1 -   6739814 I
e macNem1.NW_012010856v1          188924 1 -  11645122 I
e macFas5.chr2                    169445 0 - 192460366 C
e nomLeu3.chr21                 42114527 0 -  86207423 C

a score=7192.000000
s hg38.chr14_GL000009v2_random    177837 20 +    201709 tttttt---------tattatactttaag
s panTro5.chr9                  41867915 19 + 116767853 tttttt----------attatattttaag
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835463 22 + 205426864 tttttt-------attattatgctttaag
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244946 24 +    245036 tttttttt-----attattatgctttaag
i gorGor5.CYUI01000160v1       C 0 C 0
s canFam3.chr31                 28793026 29 -  39895921 TTTAATTTGGGGCAAAATTATATCTTAAA
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e micMur3.chr31                 30879998 30 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204270226  1 - 204787373 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4130126  0 -   9889416 C
e otoGar3.GL873528              20756878  0 +  38779656 C
e colAng1.NW_012123820v1           75435  1 -  10971483 I
e dasNov3.JH568778               6691740 16 +   6883506 I
e cebCap1.NW_016107322v1         7661765  5 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e manLeu1.NW_012099043v1          186334  1 -    785044 I
e chlSab2.chr22                    64645  0 - 101219884 C
e cerAty1.NW_012001605v1          174151  1 -   6739814 I
e macNem1.NW_012010856v1          188924  1 -  11645122 I
e macFas5.chr2                    169445  0 - 192460366 C
e nomLeu3.chr21                 42114527  0 -  86207423 C

a score=33687.000000
s hg38.chr14_GL000009v2_random    177857 66 +    201709 ttttagggtacatgtgcacaaagtgtaggtttgctacatatgtacacatgtgccatgttggtgtgc
s panTro5.chr9                  41867934 66 + 116767853 ttttagggtacatgtgcacaacgtgcaggtttgttagatatgtatacatgggccatgttggtgtgc
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835485 66 + 205426864 ttttagggtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatattggtgtgc
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01000160v1          244970 66 +    245036 ttttagggtacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatattggtgtgc
i gorGor5.CYUI01000160v1       C 0 N 0
e mm10.chr16                    22704700 587 -  98207768 I
e micMur3.chr31                 30879998 30 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204270226  1 - 204787373 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4130126  0 -   9889416 C
e canFam3.chr31                 28793055  0 -  39895921 C
e otoGar3.GL873528              20756878  0 +  38779656 C
e colAng1.NW_012123820v1           75435  1 -  10971483 I
e dasNov3.JH568778               6691740 16 +   6883506 I
e cebCap1.NW_016107322v1         7661765  5 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e manLeu1.NW_012099043v1          186334  1 -    785044 I
e chlSab2.chr22                    64645  0 - 101219884 C
e cerAty1.NW_012001605v1          174151  1 -   6739814 I
e macNem1.NW_012010856v1          188924  1 -  11645122 I
e macFas5.chr2                    169445  0 - 192460366 C
e nomLeu3.chr21                 42114527  0 -  86207423 C

a score=1201543.000000
s hg38.chr14_GL000009v2_random    177923 4881 +    201709  
s panTro5.chr9                  41868000 4877 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77835551 4821 + 205426864  
i panPan2.chr3                 C 0 C 0
e mm10.chr16                    22704700  587 -  98207768 I
e micMur3.chr31                 30879998   30 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204270226    1 - 204787373 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4130126    0 -   9889416 C
e canFam3.chr31                 28793055    0 -  39895921 C
e otoGar3.GL873528              20756878    0 +  38779656 C
e colAng1.NW_012123820v1           75435    1 -  10971483 I
e dasNov3.JH568778               6691740   16 +   6883506 I
e cebCap1.NW_016107322v1         7661765    5 +  14377064 I
e saiBol1.JH378168              10930836   18 -  13128814 I
e manLeu1.NW_012099043v1          186334    1 -    785044 I
e chlSab2.chr22                    64645    0 - 101219884 C
e cerAty1.NW_012001605v1          174151    1 -   6739814 I
e macNem1.NW_012010856v1          188924    1 -  11645122 I
e macFas5.chr2                    169445    0 - 192460366 C
e nomLeu3.chr21                 42114527    0 -  86207423 C

a score=571741.000000
s hg38.chr14_GL000009v2_random    182804 1167 +    201709  
s panTro5.chr9                  41872877 1162 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77840372 1159 + 205426864  
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1               0 1158 +  12760026  
i gorGor5.CYUI01015020v1       N 0 C 0
e mm10.chr16                    22704700  587 -  98207768 I
e micMur3.chr31                 30879998   30 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204270226    1 - 204787373 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4130126    0 -   9889416 C
e canFam3.chr31                 28793055    0 -  39895921 C
e otoGar3.GL873528              20756878    0 +  38779656 C
e colAng1.NW_012123820v1           75435    1 -  10971483 I
e dasNov3.JH568778               6691740   16 +   6883506 I
e cebCap1.NW_016107322v1         7661765    5 +  14377064 I
e saiBol1.JH378168              10930836   18 -  13128814 I
e manLeu1.NW_012099043v1          186334    1 -    785044 I
e chlSab2.chr22                    64645    0 - 101219884 C
e cerAty1.NW_012001605v1          174151    1 -   6739814 I
e macNem1.NW_012010856v1          188924    1 -  11645122 I
e macFas5.chr2                    169445    0 - 192460366 C
e nomLeu3.chr21                 42114527    0 -  86207423 C

a score=1000.000000
s hg38.chr14_GL000009v2_random    183971 1 +    201709 c
s panTro5.chr9                  41874039 1 + 116767853 c
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77841531 1 + 205426864 c
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1158 1 +  12760026 c
i gorGor5.CYUI01015020v1       C 0 C 0
s chlSab2.chr22                    64645 1 - 101219884 C
i chlSab2.chr22                C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e micMur3.chr31                 30879998 30 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204270226 1 - 204787373 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4130126 0 -   9889416 C
e canFam3.chr31                 28793055 0 -  39895921 C
e otoGar3.GL873528              20756878 0 +  38779656 C
e colAng1.NW_012123820v1           75435 1 -  10971483 I
e dasNov3.JH568778               6691740 16 +   6883506 I
e cebCap1.NW_016107322v1         7661765 5 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e manLeu1.NW_012099043v1          186334 1 -    785044 I
e cerAty1.NW_012001605v1          174151 1 -   6739814 I
e macNem1.NW_012010856v1          188924 1 -  11645122 I
e macFas5.chr2                    169445 0 - 192460366 C
e nomLeu3.chr21                 42114527 0 -  86207423 C

a score=6790.000000
s hg38.chr14_GL000009v2_random    183972 3 +    201709 TAA
s panTro5.chr9                  41874040 3 + 116767853 TAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77841532 3 + 205426864 TAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1159 3 +  12760026 TAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42114527 3 -  86207423 TAA
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    169445 3 - 192460366 TAA
i macFas5.chr2                 C 0 C 0
s chlSab2.chr22                    64646 3 - 101219884 TAA
i chlSab2.chr22                C 0 C 0
s dasNov3.JH568778               6691756 3 +   6883506 TGA
i dasNov3.JH568778             I 16 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e micMur3.chr31                 30879998 30 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204270226 1 - 204787373 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4130126 0 -   9889416 C
e canFam3.chr31                 28793055 0 -  39895921 C
e otoGar3.GL873528              20756878 0 +  38779656 C
e colAng1.NW_012123820v1           75435 1 -  10971483 I
e cebCap1.NW_016107322v1         7661765 5 +  14377064 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e manLeu1.NW_012099043v1          186334 1 -    785044 I
e cerAty1.NW_012001605v1          174151 1 -   6739814 I
e macNem1.NW_012010856v1          188924 1 -  11645122 I

a score=824.000000
s hg38.chr14_GL000009v2_random    183975 1 +    201709 T
s panTro5.chr9                  41874043 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77841535 1 + 205426864 T
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1162 1 +  12760026 T
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42114530 1 -  86207423 T
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    169448 1 - 192460366 G
i macFas5.chr2                 C 0 C 0
s chlSab2.chr22                    64649 1 - 101219884 G
i chlSab2.chr22                C 0 C 0
s cebCap1.NW_016107322v1         7661770 1 +  14377064 T
i cebCap1.NW_016107322v1       I 5 C 0
s aotNan1.NW_018487195v1         4130126 1 -   9889416 T
i aotNan1.NW_018487195v1       C 0 C 0
s dasNov3.JH568778               6691759 1 +   6883506 T
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e micMur3.chr31                 30879998 30 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204270226 1 - 204787373 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28793055 0 -  39895921 C
e otoGar3.GL873528              20756878 0 +  38779656 C
e colAng1.NW_012123820v1           75435 1 -  10971483 I
e saiBol1.JH378168              10930836 18 -  13128814 I
e manLeu1.NW_012099043v1          186334 1 -    785044 I
e cerAty1.NW_012001605v1          174151 1 -   6739814 I
e macNem1.NW_012010856v1          188924 1 -  11645122 I

a score=46067.000000
s hg38.chr14_GL000009v2_random    183976 5 +    201709 TTTTA
s panTro5.chr9                  41874044 5 + 116767853 TTTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77841536 5 + 205426864 TTTTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1163 5 +  12760026 TTTTA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42114531 5 -  86207423 TTTTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270227 5 - 204787373 TTTTA
i rheMac8.chr2                 I 1 C 0
s macFas5.chr2                    169449 5 - 192460366 TTTTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188925 5 -  11645122 TTTTA
i macNem1.NW_012010856v1       I 1 C 0
s cerAty1.NW_012001605v1          174152 5 -   6739814 TTTTA
i cerAty1.NW_012001605v1       I 1 C 0
s chlSab2.chr22                    64650 5 - 101219884 TTTTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186335 5 -    785044 TTTTA
i manLeu1.NW_012099043v1       I 1 C 0
s colAng1.NW_012123820v1           75436 5 -  10971483 TTTTA
i colAng1.NW_012123820v1       I 1 C 0
s cebCap1.NW_016107322v1         7661771 5 +  14377064 TTTTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130127 5 -   9889416 TTTTA
i aotNan1.NW_018487195v1       C 0 C 0
s dasNov3.JH568778               6691760 5 +   6883506 TTTCA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e micMur3.chr31                 30879998 30 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28793055 0 -  39895921 C
e otoGar3.GL873528              20756878 0 +  38779656 C
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=224014.000000
s hg38.chr14_GL000009v2_random    183981 26 +    201709 ACTTTCAAAAGATTAGATACATTTAC
s panTro5.chr9                  41874049 26 + 116767853 ACTTTCAAAAGATTAGATACATTTAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77841541 26 + 205426864 ACTTTCAGAAGATTAGATGCATTCAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1168 26 +  12760026 ACTTTCAGAAGTTTAGATGCATTCAC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42114536 26 -  86207423 ACTTTCAAAAGATTAGATACATTCAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270232 26 - 204787373 ACTTTCAAAAGATTAGATACATTCGC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169454 26 - 192460366 ACTTTCAAAAGATTAGATACATTCAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188930 26 -  11645122 ACTTTCAAAAGATTAGATACATTCGC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174157 26 -   6739814 ACTTTCAAAAGATTAGATACATTCAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64655 26 - 101219884 ACTTTCAAAAGATTAGACACATTCAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186340 26 -    785044 ACTTTCAAAAGATTAGATACATTCAC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75441 26 -  10971483 ACTTTCAAAAGATTAGATACATTCAC
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661776 26 +  14377064 ACTTTGAAAAGATTAGATATATTTAC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130132 26 -   9889416 ACTTTGAAAAGATTAGATATATTTAC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20756878 26 +  38779656 ACTTTGAAAAAGTTAGATATATTCAA
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6691765 26 +   6883506 AATTTGCAAAGGTCATCTATTTTCAA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e micMur3.chr31                 30879998 30 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28793055  0 -  39895921 C
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=98268.000000
s hg38.chr14_GL000009v2_random    184007 9 +    201709 CCTCTTCTG-
s panTro5.chr9                  41874075 9 + 116767853 CCTCTTCTG-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77841567 9 + 205426864 CCTCTTCTG-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1194 9 +  12760026 CCTCTTCTG-
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42114562 9 -  86207423 CCTCTTCTG-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270258 9 - 204787373 CCTCTTCTG-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169480 9 - 192460366 CCTCTTCTG-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188956 9 -  11645122 CCTCTTCTG-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174183 9 -   6739814 CCTCTTCTG-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64681 9 - 101219884 CCTCTTCTG-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186366 9 -    785044 CCTCTTCTG-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75467 9 -  10971483 ACTCTTCTG-
i colAng1.NW_012123820v1       C 0 C 0
s cebCap1.NW_016107322v1         7661802 9 +  14377064 CCTCTTCTG-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130158 9 -   9889416 CCTCTTCTG-
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30880028 9 -  47401472 CCTCCTCTG-
i micMur3.chr31                I 30 C 0
s otoGar3.GL873528              20756904 9 +  38779656 TCTCCTCAG-
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28793055 9 -  39895921 CTTCCTTTG-
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6691791 7 +   6883506 ---CCTCTGA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e saiBol1.JH378168              10930836 18 -  13128814 I

a score=430434.000000
s hg38.chr14_GL000009v2_random    184016 36 +    201709 AATTTTAATTCCTGATGGAAAGATTGT-GAAATCTCA
s panTro5.chr9                  41874084 36 + 116767853 AATTTTAATTCCTGATGGAAACATTGT-GAAATCTCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77841576 36 + 205426864 AATTTTAATTCCTGATGGAAAGATTGT-GAAATCTGA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1203 36 +  12760026 AATTTTAATTCCTGATGGAAAGATTGT-GAAATCTCA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42114571 36 -  86207423 AATTTTAATTCCTGATGCAAAGATTAT-GAAATCTCG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270267 36 - 204787373 AATTTTAATTCCTGATGCAAAGATTAT-GAAATCTCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169489 36 - 192460366 AATTTTAATTCCTGATGCAAAGATTAT-GAAATCTCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          188965 36 -  11645122 AATTTTAATTCCTGATGCAAAGATTAT-GAAATCTCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174192 36 -   6739814 AATTTTAATTCCTGATGCAAAGATTAT-GAAATCTCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64690 36 - 101219884 AATTTTAATTCCTGATGCAAAGATTAT-GAAATCTCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186375 36 -    785044 AATTTTAATTCCTGATGCAAAGATTAT-GAAATCGCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75476 36 -  10971483 AATTTTAATTCCTGATGCAAAGATTAT-GAAATCTCA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10930854 36 -  13128814 AATTTTACTTCTTGATGTAAAGATTAT-GAAATCTCA
i saiBol1.JH378168             I 18 C 0
s cebCap1.NW_016107322v1         7661811 36 +  14377064 AATTTTACTTCTTGATGTAAAGATTAT-GAAATCTCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130167 36 -   9889416 AATTTTACTTCTTGATGTAAAGAGTAT-GAAATCTCA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30880037 36 -  47401472 AATTTTAATTCTTGATGCAAAGATTAT-GGAATCTCA
i micMur3.chr31                C 0 I 180
s otoGar3.GL873528              20756913 36 +  38779656 AATTGTAATTCCTGTTATAAAAAGTAT-GAAATCTCA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28793065 36 -  39895921 ATTTTCAATTTTAGATACTAAGATTAT-GGGATCTCA
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6691798 36 +   6883506 GTTTTTGACTCTTGATATAAAGATTATAGAGATTGT-
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=1725395.000000
s hg38.chr14_GL000009v2_random    184052 174 +    201709 AGAGGATAATGAATCAGCTTCTGATTATATTCT-GGAATTGCGATTTTATCACACATCCAAGAATGCGTATTCACTTTCCTTTACATTACACACATGCATAATACCATGCTGA-GTGATGCTGGAAAA-AGTGAGTCTTCAG-TAATGCCCTCATGAAATTA-CAGTCTCACTACACTG
s panTro5.chr9                  41874120 174 + 116767853 AGAGGATAATGAATCAGCTTCTGATTATATTCT-GGAATTACGATTTGGTCACCCATCCAAGAATGCGTATTCACTTTCCTTTACATTACACACATGCATAATACCATGCTGA-GTGATGCTGGAAAA-AGTGAGTCTTCAG-TAATGCCCTCATGAAATTA-CAGTCTCACTACACTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77841612 174 + 205426864 AGAGGATAATGAATCAGCTTCTGATTATATTCT-GGAATCATGATTTGATCACCCATCCAAGAATGAGTATTCACTTTCCTTTACATTACACACATGCATAATACCATGCTGA-GTGATGCTGGAAAA-GGTGAGTCTTCAG-TAATGCCTTCGTGAAATTA-CAGTCTCACTATACGG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1239 174 +  12760026 AGAGGGTAATGAATCAGCTTCTGATTATATTGT-GGAATCATGATTTGATCACCCATCCAAGAGTGAGTATTCACTTTCCTTTACATTACACACATGCATAATACCATGCTGA-GTGATGCTGGAAAA-GGTGAGTCTTCAG-TAATGCCTTCATGAAATTA-CAGTCTCACTACACGG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42114607 174 -  86207423 AGAGGATAATGAATCAGCTTCTGATTATATTCT-GGAACCACGATTTGGTCACCCATCCAAGAATGCGTATTCACTTTCCTTTACATTACACACATGTGTAATACCATACTGA-GTGATGTTGGGAAA-GGTGAGTCTTCAG-TGATGCCTTCATGAAGTTA-CAGTCTCACCACACTG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270303 170 - 204787373 AGAGGATAATGAATCAGCATCTGATTATATTCT-GGAGTCACGATTTGATCACCCATCCAAGAATGTGTATTCACTTTTCTTTACGTT----GCATTCTTAATACCATGCTGA-GTGGTGCTAGAAGA-GGTGAGCCTTCAG-CAATGCCTTCATGAAACTA-CAGTCTCACTGCACCG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169525 170 - 192460366 AGAGGATAATGATTCAGCATCTGATTATATTCT-GGAGTCACGATTTGATCACCCATCCAAGAATGTGTATTCACTTTTCTTTACGTT----GCATTCTTAATACCATGCTGA-GTGGTGCTAGAAGA-GGTGAGCCTTCAG-CAATGCCTTCATGAAACTA-CCGTCTCACTACACCG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189001 170 -  11645122 AGAGGATAATGAATCAGCATCTGATTATATTCT-GGAGTCACGATTTGATCACCCATCCAAGAATGTGTATTCACTTTTCTTTACGTT----GCATTCTTAATACCATGCTGA-GTGGTGCTAGAAGA-GGTGAGCCTTCAG-CAATGCCTTCATGAAACTA-CAGTCTCACTGCACCG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174228 170 -   6739814 AGAGGATAATGAATCAGCATCTGATTATATTCT-GTAGTCACGATTTGATCACCCATCCAAGAATGTGTATTCACTTTTCTTTACATT----GCGTTCTTAACACCATGCTGA-GTGGTGCTGGAACA-GGTGAGCCTTCAG-CAATGCCTTCATGAAACTA-CAGTCTCACTACACCG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64726 170 - 101219884 AGAGGATAATGAATCAGCATCTGATTATATTCT-GGAGTCACGATTTGATCACCCATCCCAGAATGTGTATTCACTTTTCTTTACATT----GCATTCTTAATACCATGCTGA-GTGGTGCTGGAAGA-GGTGAGCCTTCAG-TAATGCCTTCATGAAACTA-CAGTCTCACTACACCG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186411 170 -    785044 AGAGGATAATGAATCAGCATCTGATTATATTCT-GGAGTCACGATTTGATCACCCATCCAAGAATGTGTATTCACTTTTCTTTACATT----GCATTCTTAACACCATGCTGA-GTGGTGCTGGAAGA-GGTGAGCCTTCAG-TAATGCCTTCATGAAACTA-CAGTCTCACTACACCG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75512 170 -  10971483 AGAGGATAATGAATCAGCATCTGATTATATTGT-GGAGTCACGATTTGATCACCCATCCAAGAATGCGTATTCACTTTCCTTTACATT----GCATTCTTAATACCATGCTGA-GTAGTGCTGGAAGA-GGTGAGTCTTCAG-TAATGCCTTCATTAAACTA-CAGTCTCACTACACCG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10930890 174 -  13128814 AGAGGATACTGAATCAGCATCTGATTATATTCT-GGAATCATGATTTGATCACCCATCCAAGAATACGTATTAACTTTCCTTTGCATTGTACACATGCATAATATCATGTTGA-ATGATGCTGGAAAA-GGTGAATCTTCAG-TAATGCCTTCATGAAATTA-CAGTCTCACTACACTG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7661847 174 +  14377064 AGAGGATAATGAATCAGCATCTGATTATATTCT-GGAATCATGATTTGATCACCCATCCAAGAATATGTATTAACTTTCCTTTACATTGCACACATGCATAATACCATGATGA-ATGATGCTGGAAAA-GATGAGTCTTCAG-CAATGCCTTCATGAAATTA-CAGTCTCACTACACTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130203 174 -   9889416 AGAGGATAATGAATCAGCATCTGATTATATTCT-GGAATCATGATTTGATCACCCATCCAAGAATATGTATTACCTTTCCTTTACATTGCATACATGCATAATACCATGATGA-GTGATGTTGGAAAA-GGTGAGTCTTCAG-TAATGCCTTCATGAAATTA-CAGTCTCACTACACTG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20756949 164 +  38779656 AGTGGAAAACCAAACAGTTTC---TTATGTTG--GAAATGCTGATTTGATCACCCATCCAACAATATAGATTAACTTTTC---ACATT----ACATACATAATACCATGATCACCTTGGGTTTGAAAA-GGTGAGTCACCTGTTAATGCCTCCATGAATTTATCAGTCTCCACACAT--
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28793101 177 -  39895921 AGAGAAAAATGAATCAGTGTCTGATTCTATTCTGGGAATCACGATCTGATCATCCGTCCAACAATGTGTGTTAATTTTCCTTCACATTGCACACATACATAATGCCAGGTTAA-GTAGTGCTAGAAAAGGGTGCATCTTCAG-GAACATCTTCATGAAATGGTCAGTCTCATCACACCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6691834 157 +   6883506 GGAGGAAAATGAGTGAGTATTTGGTGCTATTCTGGGACTCTTGGTTTGGTCACCCATCCAACAGGGTGTAATAACTTTTCTTTGCAG-----ACATG-----------AATGA-GAAAGGTTAGAAAA-GGTGCCTCATCGG-TAATGCCTTCATGAAATTATCAGTCTCACTACA---
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e micMur3.chr31                 30880073 180 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=517233.000000
s hg38.chr14_GL000009v2_random    184226 55 +    201709 AGGTATTTTCTTTTTAACCCTTTCTTTCTTTTCTGCTGTGA-ATATGTGTCTTCTA
s panTro5.chr9                  41874294 55 + 116767853 AGGTATTTTCTTTTTAACGCTTTTTTTCTTTTCTGCTGTGA-ATATGTGCCTTCTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77841786 55 + 205426864 AGGTATTTTCGTTTTAACCCTTTCTTTCTTTTCTGATGTGA-ATATGTGCCTTCTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1413 55 +  12760026 AGGTATTTTCGTTTTAACCCTTTCTTTCTTTTCTGCTGTGA-ATACGTGCCTTCTA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42114781 48 -  86207423 AGATATTTTCTTTTTAAACC----TTTCTTTTCTGCTGTGA-ATAAGTGC---CTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270473 51 - 204787373 AGGTATTTCCTTTCTGACCC----TTTCTTTTCTGCTGTGA-ATAAGTGCCTTCTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169695 51 - 192460366 AGGTATTTCCTTTCTGACCC----TTTCTTTTCTGCTGTGA-ATAAGTGCCTTCTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189171 50 -  11645122 aggta-ttcctttctgaccc----tttcttttctgctgtga-ataagtgccttcta
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174398 51 -   6739814 AAGTATTTTCTTTTTGACCC----TTTCTTTTCTGCTGTGA-ATAAGTGCCTTCTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64896 51 - 101219884 AGGTATTTTCTTTTTGACCC----TTTCTTTTCTGCTATGA-ATAAGTGCCTTCTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186581 51 -    785044 AGGTATTTTCTTTTTGACCC----TTTCTTTTCTGCTATGA-ATAAGTGCCTTCTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75682 51 -  10971483 AGGTATTTTCTTTTTAACCC----TTTCTTTTCTGCTATGA-ATAAGTGCCTTCTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10931064 55 -  13128814 AGGTATTTTCTTTTTAACCTTTTCTTTATTTTCTGCCATGA-ATAAGTGCCTTCTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662021 55 +  14377064 AGGTATTTTCTTTTTAACCCTTTCTTTCTTTTCTGCCATGA-ATAAGTGCCTTCTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130377 54 -   9889416 AGATATTTTCTTTTTAACCTTTTCTTTCTCTTCTGCCATG--GTAAGTGCCTTCTA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30880253 55 -  47401472 AGGTATTTTCTTTCTAAGCCTTTCTTTCTTTTCTGCTATCA-TTAAGTGTCTTCTA
i micMur3.chr31                I 180 C 0
s otoGar3.GL873528              20757113 52 +  38779656 GTGCACTTTCTTTCTGAG----TCTTTATTTTCTGCTATCAGTTAAGTCCCTTCTA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28793278 55 -  39895921 AAGTATTTTATTTTTAAACCCCTCTTTCTTTTCTGCTATCA-ATAAATGTCTTCCA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6691991 29 +   6883506 --------------------------TCTTTCATGCTATTG-CTAGGTGCTTTCTA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22704700 587 -  98207768 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=281510.000000
s hg38.chr14_GL000009v2_random    184281 23 +    201709 AGAGGTGAACAA-TGGGAAAAACT
s panTro5.chr9                  41874349 24 + 116767853 AGAGGTGAACAACTGGGAAAAACT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77841841 24 + 205426864 AGAGATGAACAACTGGGAAAAACT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1468 24 +  12760026 AGAGATGAACAACTGGGAAAAACT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42114829 24 -  86207423 AGAGATGAACAAGTGGGAAAAACT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270524 24 - 204787373 AGAGATGAACAAGTGGGAAAAACT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169746 24 - 192460366 AGAGATGAACAAGTGGGAAAAACT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189221 24 -  11645122 agagatgaacaagtgggaaaaact
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174449 24 -   6739814 AGAGACGAACAAGTGGGAAAAACT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64947 24 - 101219884 AGAGATGAACAAGTGGGAAAAACT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186632 24 -    785044 AGAGATGAACAAGTGGGGAAAACT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75733 24 -  10971483 AGAGATGAACAAGTGGAAAAAACT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10931119 24 -  13128814 AGAGATGAACAAGTGGGAAAAGCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662076 24 +  14377064 AGAGATGAACAAGTGGGAAAAGCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130431 24 -   9889416 AGAGATGAACAAGTGGGAAAAACT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30880308 24 -  47401472 AGAGATAAACAAATAGGAGAAACT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20757165 23 +  38779656 AGAGATAAA-GTACAGGTGAAACT
i otoGar3.GL873528             C 0 I 222
s mm10.chr16                    22705287 23 -  98207768 agaga-gagagaatatgctgggct
i mm10.chr16                   I 587 C 0
s canFam3.chr31                 28793333 24 -  39895921 AGAGATGAACAAACAGGAAAACCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6692020 21 +   6883506 GGAGATGAACAAGCTAGAAAA---
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=3709570.000000
s hg38.chr14_GL000009v2_random    184304 311 +    201709 GAAAAAGAACCTTCATCTAATTCAGTA----ACTAGCTTTTGT-ATCTTCTAAGAA---TTTTTATCTCCAGAAAGCTCTAATTTTCATT-CCTTTACAAGC--TTTATTTCTCTCT--CCTTTCCAACACCAGACTTTGCTCTGTTTGTTTTCTATATCTTTTTT--AGAGATGCCTACAAT----AG-AAA----AAAA------------------------CTATGACATATTCAATACATCTGAAAAGTTTGCATTACCATAGATAAGAATGAATTATCTGTTTATAAAG---AAAAAA-CAATAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
s panTro5.chr9                  41874373 313 + 116767853 GAAAAAGAACCTTCATCTAATTCAGTA----ACTAGCTTTTGT-ATCTTCTAAGAA---TTTTTATCTCCAGAAAGCTCTAATCTTCATT-CCTTTTCAAGC--TTTATTTCTCTCT--CCTTTCCAACACCAGACTTTTCTCTGTTTGTTTTCTATACCTTTTTT-TAGAGATGCCTACAAT----AG-AAA----AAAT------------------------CTATGACATATTCAATACATCTGAAAAGTTTGCATTGCCATAGATAAGAATGAATTATCTGTTTATAAAG---AAAAAAACAATAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77841865 312 + 205426864 GAAAAAGAACCTTCATCTAATTCAGTA----ACTAGCTTTTGT-ATCTTCTAAGAA---TTTTTGTCTCCAGAAAGCTCTGATTTTCATT-CCTTTACAAGC--TTTATTCCTCTCT--CCTTTCCAACACCAGACTTTGCTGTGTTTGTTTTTTGTACCTTTTTT--AGAGACGCCTACAAT----AGAAAA----AAAA------------------------CCATGACATATTCAATACATCTGAAAATTTTGCATTGCCATAGATAAGAATGAATTATCTGTTTATAAAG---AAAAAA-CAATAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1492 312 +  12760026 GAAAAAGAACCTTCATCTAATTCAGTA----ACTAGCTTTTGT-ATCTTCTAAGAA---TTTTTGTCTCCAGAAAGCTCTGATTTTCATT-CCTTTACAAGC--TTTATTCCTCTCT--CCTTTCCAACACCAGACTTTGCTGTGTTTGTTTTCTGTACCTTTTTT--AGAGACGCCTACAAT----AG-AAA----AAAA------------------------CTATGACATATTCAATACATCTGAAAATTTTGCATTGCCATAGATAAGAATGAATTATCTGTTTATAAAG---AAAAAAACAATAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42114853 308 -  86207423 GAAAAAGAACCTTCATTTAATTCAGTA----ACTAGCTTTTGT-ATCTTCTAAGAA---TTTTTGTCTCCAAAAAGCTCTAATTTTCATT-CCTTTACAAGC--TTTATTTCTCTCT--CCTTTCC-ACACCAGACTTTGCTCTGTTTGTTTTCTCTACCTTTTTT--AGAGACGCCTGCAAT----AG-GAA----AAAA------------------------CTATGACATATTCAATACATCTGAAAATTTTGCATTGCCATAAATAAGAATGAATTATCTGTTTATAAAG---AAAAAA---ATAAAAATATGAACCGAGAAAGCACAGAAGGTAGTAACCACATTTCGACGTTTACC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270548 313 - 204787373 GAAAAAGGACCTTCATCCAATTCAGTA----ACTAGTTTTTGT-ATCTTCTAAGAA---TTTTTGTCTCCAAAAAGCTCTAATTTTCATT-CCATTACAAGT--TTTATTTCTTTCT--CCTTTCCAACCCCAGACTTTTCCTTGTTTGTTTTCTCCACCTTTTTA-CAGAGACGCCTACAAT----AG-AAA----AAAA------------------------GTATGACATATTCAAAACATCTGAAAATTTTACATTGCCGTAGATAAGAATGAATTATCTGTTTATAAAG---AAGAAAACGTTAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    169770 313 - 192460366 GAAAAAGGACCTTCATCCAATTCAGTA----ACTAGTTTTTGT-ATCTTCTAAGAA---TTTTTGTCTCCAAAAAGCTCTAATTTTCATT-CCATTACAAGT--TTTATTTCTCTCT--CCTTTCCAACACCAGACTTTTCCCTGTTTGTTTTCTCCACCTTTTTA-CAGAGACGCCTACAAT----AG-AAA----AAAA------------------------GTATGACATGTTCAAAACATCTGAAAATTTTACATTGCCATAGATAAGAATGAATTATCTGTTTATAAAG---AAGAAAACGTTAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189245 313 -  11645122 gaaAAAGGACCTTCATCCAATTCAGTA----ACTAGTTTTTGT-ATCTTCTAAGAA---TTTTTGTCTCCAAAAAGCTCTAATTTTCATT-CCATTACAAGT--TTTATTTCTTTCT--CCTTTCCAACACCAGACTTTTCCCTGTTTGTTTTCTCCACCTTTTTA-CAGAGACGCCTACAAT----AG-AAA----AAAA------------------------GTATGACATATTCAAAACATCTGAAAATTTTACATTGCCATAGATAAGAATGAATTATCTGTTTATAAAG---AAGAAAACGTTAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174473 316 -   6739814 GAAAAAGAACCTTCATCCAATTCAGTA----ACTAGTTTTTGT-ATCTTCTAAGAA---TTTTTGTCTCCAAAAAGCTCTAATTTTCATT-CCATTCCAAGT--TTTATTTCTCTCT--CCTTTCCAACATCAGACTTTTCCCTGTTTGTTTTCTCCACCTTTTTA-CAGAGACGCCTACAAT----AG-AAA----AAAA------------------------GTATGACATATTCAAAACATCTGAAAATTTTGCATTGCCATAGATAAGAGTGAATTATCTGTTTATAAAGAAAAAAAAAACATTAAAAATATGAACCAGGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    64971 310 - 101219884 GAAAAAGAA-CTTCATCCAATTCAGTA----ACTAGTTTTTGT-ATCTTCTAAGAA---TTTTTGTGTCCAAAAAGCTCTAATTTTCATT-CCATTACAAGT--TTTATTTCTCTCT--CCTTTCCAAC--CAGACTTTTCCCTGTTTGTTTTCTCTACCTTTTTA-CAGAGACGCCTACAAT----AG-AAA----AAAA------------------------GTATGACATATTCAAAACATCTGAAAATTTTGCTTTGCCATAGATAAGAATGAATTATCTGTTTATAAAG---AAAAAAGCGTTAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186656 314 -    785044 GAAAAAGAACCTTCATGCAATTCAGTA----ACTAGTTTTTGT-ATCTTCTAAGAA---TTTTTGTCTCCAAAAAGCTCTAATTTTCATT-CCATTCCAAGT--TTTATTTCTCTCT--CCTTTCCAACATCAGACTTTTCCCTGTTTGTTTTCTCCACCTTTTTA-CAGAGACGCCTACAAT----AG-GAA----AAAA------------------------GTATGACATATTCAAAACATCTGAAAATTTTGCATTGCCGTAGATAAGAGTGAATTATCTGTTTATAAAG--AAAAAAAACATTAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           75757 313 -  10971483 GAGAAAGAACCTTCATCCAATTCAGTA----ACTAGTTTTCGT-ATCTTCTAAGAA---TTTTTGTCTCCAAAAAGCTCTAATTTTCATT-CCATAACAAGT--TTTATTTCTCTCT--TCTTTCCAACACCAGACTTTTCCCTGTTTGTTTTCTCTACCTTTTTA-CAGAGATGCCTACAAT----AG-AAA----AAAA------------------------GTATGACATATTCAAAACATCTGAAAATTTTGCAATGCCATAGATAAGAATGAATTATCTGTTTATAAAG---AAAAAAACGTTAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10931143 325 -  13128814 GGAAAAGAACCTTCATCTCATTCAGTA----ACTAGCTTTTGT-ATCATCTAAGAA---TTTTTGTCTCTAAAAAGCTCAAATTTTCATT-CCTATGAAAGC--TTTATTTCTTTCT--TCTTTTCAACACCAGACTTTGCTCTGTTTGTTTTCTCTACCCTTTT---AGAGACACCTACAGT--TAAA-AAA----ACAA---------AAAACAAAAAA----CTATGACATACTCAATACCTCTGAAATTGTTGCATTGCTGTGGATTAGAATGAATTATCTATTTATAAAG--AAAAAAAACAATAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662100 337 +  14377064 GGAAAAGAACCTTCATCTAATTCAGTA----ACTAGTTTTTGT-ATCATCTAAGAA---TTTTTGTCTCTAAAAAGCTCAAATTTTCATT-CCTTTGCAAGC--TTTATTTCTCTCT--TCTTTTCAACACCAGACTTTGCTCTGTTTGTTTTCTCTGCCTTTTT---AGAGACACCTACAAT--Taaa-aaa----aaaacaaaaaaacaaaacaaaacaaaaTCTATGACATACTCAATACCTCCGAAATTGTTGCATTGCCATGGATAAGAATGAATTATCTATTTATAAAG---AAAAAAACAATAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAGCCACATTTAGATGTTTATC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130455 326 -   9889416 GGAAAAGAACCTTCATCTAATTCAGTA----ACTAGCTTTTGT-ATCGTCTAAGAA---TTTTCGTCTCTAAAAATCTCAAATTTCCATT-CCTTTACAAGC--TT--CTTCTCTCT--TCTTTTCAACACCAGACTTTGCTCTGTTTGTTTTCTCTACCTTTTT---AGAGACACTTACAAT--TTAA-AAAAACCAAAA---------AAACCAAAAAA----CTATGACATACTCAATACCTCCGAAATTGTTGCATTGCCATGGATAAGAATGAATTATCTATTTATAAAG---AAAAAAACAATAAAAAAATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30880332 327 -  47401472 AGAAAAGAACCTTAGTCTAATTAAGTA----ACTAGCTTCCCT-ATCTCATAAGAA---TTTTTGTCTCTAAATAGCTCTCATTTCCATTCGTTTTTCAAGATATTTTTCTTTCTTC--CCTTTCCAACACCAGACTTTGCTCTGTTTGTTTTCTCCACCTTTACG-CAGAGACACCTACAAT--AAAG-AAA----ACAA--------------AAATAA----CTATGACATATTCAATACATCTGCAAATTTTTCTTTGCTACAGAAAAGAATGTTTTATCTGTTTATAAAGAAAAAAAAAACAATAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20757410 322 +  38779656 GGAAAATAACCTTAGTCTAACCAAGTA----ACTAGCTCTCTTAATCCCCTGGGAATTTTTTTTTTCTCCAAATAGCTCACATTTTCATT-GCTTTTTAAGA----TTTCTTTCTCT--CCCTTCCAACACCAGACTTTGCTCTGTTTGTTTTCTCTACCTATAAG-CAGAGACACCTACAAT--GAAG-AAA----ACAA--------------AAATAA----CTATGACATATTCAATACATCTGCAAATTTTGCATTGCTGCAGAA---AATGTATTATCTGTTTAT-AAGACAAAAAAAAAAATAAAACTATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i otoGar3.GL873528             I 222 C 0
s mm10.chr16                    22705310 319 -  98207768 agagaagaaccagaATCTAATTAACTAGTTCACTAGCTTCCAT--TATCCTAAGAA---GTT---TGTGCAAAACCCTTTTCTTTTTATT-TATTTTAAACT--GCATTTTCGTTTC--CTTTTCCAACATGAGCTTTTCCTCTATTTGTTTTCTCTACCCTTTTA-AAGAGACACCTACAAT----AA-AGA----AAAA-------------TATGTAG----CTATGTAACATTCAGTGCAGCTGTAAGTTCTTCATTGCTTCAGAAAAAGTT---TTGCCTG-TTGCAAAGAAAAAGAAAACAATGAAAGTATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGATGTTTATC
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28793357 314 -  39895921 AGAAAAGAACCTTAGTCTAGTTAAGTA----ACTAGCTCCTGT-CTCTCTTACGAA---TTTTTGTTTTCAAATAATTCTCACTT------CCTCTTCAAGC--TTTATTTTTCTTTACCCTTTCCCACACCAGACTTT--CCTGTTTGTTTTCTCTACCTTTTAAAAATAGACACCTACAGT----AA-AGA----AAAA--------------AAAAAA----CTGTGACATTTCCAATGCAGCTACAAATTTTGTA--GCTACAGAAAAGAAAGTATTATCTGCTTATGAAG--AAAAAAAACAATAAAAATATGAACCAAGAAAGCACAGAAGGTAGTAACCACATTTAGTTGTTTATC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6692041 306 +   6883506 ---AAAGTAGCTTAAACTAATTAAGTG----ACCAACCCCCCT-ATTTCTTAAGGA---TTTTTAATTCTAAATAAATCTTATTTTCCTT-TCTTTTCAAGG--TATATTTTTCTCTA-CCCCTCTGTCAGTAGACTTTC-----TTGCTTTTCTCTACCTTTTTA-AAGAAGCACTTACAATAAGAAG-AAA----AAAA--------------AAATAA----CTATGATGTTTTCACTGCAGCTGCAAAGTTTGCATTGCTACAGAAAAA---GAGTTATGTCCTTTTATAG---------ACGGAAAACAAATGAATCAGGAAAGCACGGAAGGTAGTA-CTACACTTAGATAGTTTTC
i dasNov3.JH568778             C 0 I 564
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=1576190.000000
s hg38.chr14_GL000009v2_random    184615 115 +    201709 ATGGAATCATCTTTATAATCCATCTGTTACAATTCCACAGAGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTTATAGGTTTGG--------TCTTATAAGGCA--TACAACACAAATTTT
s panTro5.chr9                  41874686 115 + 116767853 ATGGAATCATCTTTATAATCCATCTGTTACAATTCCACAGAGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTTATAGGTTTCG--------TCTTATAAGGCA--TACAACACAAATTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842177 115 + 205426864 ATGGAATCATATTTATAATCCATCTGTTACAATTCCACAGAGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTTATAGGTTTGG--------TCTTGTAAGGCA--TACAACACAAATTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1804 115 +  12760026 ATGGAACCATATTTATAATCCATCTGTTACAATTCCACAGAGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTTATAGGTTTGG--------TCTTGTAAGGCA--TACAACACAAATTTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115161 114 -  86207423 ATGGAATCATCTTTATAATCCATCTGTTACAACTGCACAGAGCAAATTACAA-TAATTGTGGAGTTTCCCCTCATTTTATAGGTTTGG--------TCTTGTAAGGCA--TACAACACAAATTTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270861 115 - 204787373 ATGGAATCATCTTTACAATCCATCTGTCACAATTCCACAGAGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTCATGGGTTTGG--------TCTTGTAAAGCA--TATGACACAAATTGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170083 115 - 192460366 ATGGAATCATCTTTACAATCCATCTGTCACAATTCCACAGAGCGAATTACAAGTAATTGTGAAGTTTCCCCTCATTTCATGGGTTTGG--------TCTTGTAAAGCA--TATGACACAAATTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189558 115 -  11645122 ATGGAATCATCTTTACAATCCATCTGTCACAATTCCACAGAGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTCATGGGTTTGG--------TCTTGTAAAGCA--TATGACACAAATTGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174789 115 -   6739814 ATGGAATCATCTTTACAATCCATCTGTCACAATTCCACAGAGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTCATGGGTTTGG--------TCTTGTAAAGCA--TATGACACAAATTGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65281 115 - 101219884 ATGGAATCATCTTTACAATCCATCTGTCACAATTCCACAGAGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTCATGGGTTTTG--------TCTTGTAAAGCA--TATGACACAAATTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          186970 115 -    785044 ATGGAATCATCTTTACAATCCATCTGTCACAATTCCACAGAGCAAATTACAAGTAATTGTGAAGTTTCCCCTCATTTCATGGGTTTGG--------TCTTGTAAAGCA--TATGACACAAATTGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           76070 114 -  10971483 ATAGAATCATCTTTACAATCCATCTGTCACAATTCCACAGAGCAAATTACAAGTAATTGTGAAGTTT-CCCTCATTTCATGGGTTTGG--------TCTTGTAAAGCA--TACAACACAAATTTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10931468 114 -  13128814 ATGGAATCATCTTTATAATCCATCTGTTACAATTCCACAGAGC-AATTACAAGTAATTGTGAAGTTTCCCCTCATTTTATAGGTTTGG--------CCTTGTAAGGCA--TACAACACAAATGTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662437 114 +  14377064 ATGGAATCATCTTTATAGTCCATCTGTTACAATTCCCCAGAGC-AATTACAAGTAATTGTGAAGTTTCCCCTCATTTTATAGGTTTGG--------TCTTGTAAGGCA--TACAACACAAATGTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130781 114 -   9889416 ATGGAATCATCTTTATAATCCATCTGTTACAATTCCACAGAGC-AATTATAAGTAATTGTGAAGTTTCCCCTCATTTTATAGGTTTGG--------CCTTGTAAGGCA--TACAACACAAATGTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30880659 115 -  47401472 ATGGAATCATCTTTATAATCCATCTGTTACAGTTCCACAGAGAAAATTATGAATAATTGTGAAGTTTTTCCTCATTTTATAGATTTGG--------GCTTTTAAGACA--TACATCACAAATttt
i micMur3.chr31                C 0 I 26
s otoGar3.GL873528              20757732 113 +  38779656 ATGGGATCATCTTTATAATCCATCTGTTACAATTCCACAGAGGAAATTATGAATAATTGTGAAGTTTCTCCTCATTTTATAGATTTGA--------GCTTGTAAT-CA--TACAGCACGATGTT-
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22705629 114 -  98207768 ATGGAATCATCTTTATAATCCATCTGTTGCAGTTCCCTAGAGAAAAATAAGAGTAATTGGAACATTTTTATTCATTT-ATATATCTGA--------GCTTCTAAGGCA--CATAATACAAATTTT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28793671 125 -  39895921 ATGGAATCATCTTTATAATCCATCTGTTTCAACTCCACAGAGCAAATTATGAATAATTAGGAAGTTTCTCCTCATTTTATAGATTTGGGCTGTGAAGCTTGTAAGGCAAGTACAACACAAATATT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6692911 115 +   6883506 ATGGAATTATCTTTATAATCCATTTGTTATGATTCCACAGTGCAAATTACGAGTAACTGGGGAGTTTCTATTTACTTTATAGACTTGG--------GCTTATGGGTAG--TAGAACACAAATTTT
i dasNov3.JH568778             I 564 C 0
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=340281.000000
s hg38.chr14_GL000009v2_random    184730 32 +    201709 AATTACTTTTCTTTTTGG-------TATTTGGATCTTAA
s panTro5.chr9                  41874801 32 + 116767853 AATTACTTTTCTTTTTGG-------TATTTGGATCTTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842292 32 + 205426864 AATTACTTTTCTTTTTGG-------TATTTGGGTCTTAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1919 32 +  12760026 AATTACTTTTCTTTTTGG-------CATTTGGGTCTTAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115275 32 -  86207423 ATTTACTTTTCTTTTTGG-------TATTTGGATCTTAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204270976 32 - 204787373 ATTTGCTTTTCTTTTTGG-------TATTTGGATCTTAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170198 32 - 192460366 ATTTGCTTTTCTTTTTGG-------TATTTGGATCTTAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189673 32 -  11645122 ATTTGCTTTTCTTTTTGG-------TATTTGGATCTTAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174904 32 -   6739814 ATTTGCTTTTCTTTTTGG-------TATTTGGATCTTAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65396 32 - 101219884 ATTTGCTTTTCTTTTTGG-------TATTTGGATCTTAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187085 32 -    785044 ATTTGCTTTCCTTTTTGG-------TATTTGGATCTTAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           76184 32 -  10971483 ATTTGCTTTTCTTTTTGG-------TATTTGGATCTTAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10931582 32 -  13128814 ATTTTCTTTTCTTTTTGG-------TATTTGGATTGTAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662551 32 +  14377064 ATTTTCTTTTCTTTTTGG-------TATTTGGATTGTAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130895 32 -   9889416 ATTTTCTTTTCTTTTTGG-------TATTTGGATTGTAA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20757845 32 +  38779656 ATTTGCTTTTTTTGGTGG-------TATTTTGATTTTAA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22705743 39 -  98207768 AGTAGCGTTTGTTGTTTGAGATTTTTATTTGTAATTTTA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28793796 28 -  39895921 ATTTACTTTTTCCC-----------CATTTGGATTTTAA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693026 29 +   6883506 ATTTCCTTTCATT---GG-------TATTTGGATTTCAT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30880774 26 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=465848.000000
s hg38.chr14_GL000009v2_random    184762 36 +    201709 TTTGGTCAAGTGGCC--------ACTGGGTAGATGATGGAGCCT
s panTro5.chr9                  41874833 36 + 116767853 TTTGGTCAAGTGGCC--------ACTGGGTAGATGATGGAGCCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842324 36 + 205426864 TTTGGTCAAGTGGCC--------ACTGGGTAGATGATGGAGCCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1951 36 +  12760026 TTTGGTCAAGTGGCC--------ACTGGGTAGATGATGGAGCCT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115307 36 -  86207423 TTTGGTCAAGTGGCC--------ACTGGGTGGATGATGGAGCCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271008 36 - 204787373 TTTGGTTAAGTGGCC--------ACTGGGTAGATGATGGAGCCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170230 36 - 192460366 TTTGGTTAAGTGGCC--------ACTGGGTAGATGATGGAGCCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189705 36 -  11645122 TTTGGTTAAGTGGCC--------ACTGGGTAGATGATGGAGCCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174936 36 -   6739814 TTTGGTTAAGTGGCC--------ACTGGGTAGATGATGGAGCCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65428 36 - 101219884 TTTGGTTAAGTGGCC--------ACTGGGTAGATGATGGAGCCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187117 36 -    785044 TTTGGTTAAGTGGCC--------ACTGGGTAGATGATGGAGCCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           76216 36 -  10971483 TTTGGTTAAGTGGCC--------ACTGGGTAGATGATGGAGCCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10931614 36 -  13128814 TTTGGTTAAGTGGTC--------ACGGGGTAGATGACAGAGACT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662583 36 +  14377064 TTTGGTTAAGTGGCC--------ACGGGGTAGATGATGGAGACT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130927 36 -   9889416 TTTGGTTAAGTGGCC--------ACGGGGTAGATGACAGAGACT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30880800 36 -  47401472 TTTGGTTAAGTGGCC--------ACAAGGTAGATGATGGAGCCT
i micMur3.chr31                I 26 I 388
s otoGar3.GL873528              20757877 36 +  38779656 CTTGGTTAATCAGCC--------ACCAGGTAGGTGTCGGAACCT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22705782 43 -  98207768 -TTTGTAGTATGGCTTAATTTGAAGCAAGTAGGTGGTGGGTTCT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28793824 36 -  39895921 TTTGGGTAAATGGCT--------ACCGGGTGGATGATGGAGGCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693055 32 +   6883506 TTTGACT--GTGGCC--------ATCGTGT--ATGGTGGAGCTT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=1240824.000000
s hg38.chr14_GL000009v2_random    184798 133 +    201709 CTTGAGACA---------------T----ACAGTCTTCTTC----TAGCTTTGTTGATGTGAATATTACTGTGTATTTTT-CATTCACTTATTATTTTACAAGGCATA----CTTCATTAAAAAT--------ATATCAGCATCTCATTGACAAATCACAAAATTTAAA
s panTro5.chr9                  41874869 130 + 116767853 CTTGAGACA---------------T----ACAGTCTTCT-------AGCTTTGTTGATGTAAATATCACTGTGTAGTTTT-CATTCACTTATTATTTTACAAGTCATG----CTTCATTAAAAAT--------ATGTCAGCATCTCATTGACAAATCACAAAATTTAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842360 130 + 205426864 CTTGAGACA---------------T----GCAGTCTTCT-------AGCTTTGTTGATGTAAATATTACTGTGTATTTTT-CATTCACTTATTATTTTACAAGGCATG----CTTCATTAAAAAT--------ATGTCAGCATCTCATTGACAAATCACTAAATTTAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            1987 131 +  12760026 CTTGAGACA---------------T----GCAGCCTTCTTC----TAGCTTTGTTGATGTAAATATTACTGTGTATTTTT-CATTCACTTATTATTTTACAAGGCATG----CTTCATTAAAA----------ATGTCAGCATCTCATTGACAAATCACTAAATTTAAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115343 133 -  86207423 CTTGGGACA---------------C----ACAGTCTTCTTC----TAGTTTTGTTGATGTAAATATTACTGTGTGTTTTT-CATTCACTTATCGTTTTACAAGGCATG----CTTCATTAAAAAT--------ATGTCAGCATCACATTGACAAATCACAAAATTTAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271044 133 - 204787373 CTTGGGACA---------------T----ACAGTCTTCTTC----TAGCTTTGTTGATGTAAATATTACTGTATATTTTT-CATTCACTTATTATTTTATGAGGCATA----CTTCATTAAAAAT--------ATGTCAGCATCACATTGACAAATCACAAAATTTTAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170266 133 - 192460366 CTTGGGACA---------------T----ACAGTCTTCTTC----TAGCTTTGTTGATGTAAATATTACTGTATATTTTT-CATTCACTTATTATTTTATGAGGCATA----CTTCATTAAAAAT--------ATGTCAGCATCACATTGACAAATCACAAAATTTTAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189741 133 -  11645122 CTTGGGACA---------------T----ACAGTCTTCTTC----TAGCTTTGTTGATGTAAATATTACTGTATATTTTT-CATTCACTTATTATTTTATGAGGCATA----CTTCATTAAAAAT--------ATGTCAGCATCACATTGATAAATCACAAAATTTAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          174972 133 -   6739814 CTTGGGACA---------------T----ACAGTCTTCTTC----TAGCTTTGTTGATGTAAGTATTACTGTATATTTTT-CATTCACTTATTATTTTATGAGGCATA----CTTCATTAAAAAT--------ATGTCAGCATCACATTGACAAATCACAAAATTTTAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65464 133 - 101219884 CTTGGGACA---------------C----ACAGTCTACTTC----TAGCTTTGTTGATGTAAATATTACTGTATATTTTT-CATTCACTTATTATTTTATGAGGCATA----CTTCATTAAAAAT--------ATGTCAGCACCACATTGACAAATCACAAAATTCAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187153 133 -    785044 CTTGGGACA---------------T----ACAGTCTTCTTC----TAGCTTTGTTGATGTAAGTATTACTGTATATTTTT-CGTTCACTTATTATTTTATGAGGCATA----CTTCATTAAAAAT--------ATGTCAGCTTCACATTGACAAATCACAAAATTTTAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           76252 133 -  10971483 CTTGGGACA---------------T----GCAGTCTTCTTC----TAGCTTTGTTGATGTAAATATTACTGTATATTTTT-CATTCACTTATTATTTTATGAGGCATA----CTTCATTAAAAAT--------ATGTCAGCATCACATTGACAAATCACAAAATTTAAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10931650 130 -  13128814 ATTGGGACA---------------T----ACTGTCTTTTTC----TAGCTTTGTTGATGTAAATATTACTGTATATTTTT-CAGTCACTT---ATTTTACAAAGTATG----CTTCGTTATAAAT--------ATGTCAGTATCACATTGACAAAACATATAATTTTAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662619 126 +  14377064 CTTGGGACA---------------T----ACAGTCTTTTTC----TAGCTTTGTGGATGTAAATAATACTGTATATTTTT-CTGTC-------ATTTTACAAAGTATG----CTTCATTATAAAT--------ATGTCAGTATCACATTGACAAAACACATAATTTTAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4130963 130 -   9889416 CTTGGGACA---------------T----ACAGTCTTTTTC----TAGTTTTGTTGATGTAAATATTACTGTATATTTTT-CAGTGACTT---ATTTTACAAAGTATG----CTTCATTATAAAT--------ATGTCAGTATCACATTGACAAAACACATAATTTTAA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20757913 139 +  38779656 CGTAGGACATATGGATAGTTTTCCT----ATGGCTTTCTTA----TAACTTTGTTGATGTAAATATTA-----TATTTTT-CACTGAGTGTTTA---AATATATCATG----CTTCATTAAAAA---------ACAGAAGCATTACCTTGACACATCACAAAATATATA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22705825 129 -  98207768 CATGGGACA---------------CAGAGACAGTCTTCTTA----TAGTTTTGATGATGTAGCTCTAATAGTGTTTTTTTCCATCCATGTATTATTTTA-AAAGCATA----TTTCTCTATAA----------------GAATTACATTAACATATCATGAACTTGAGa
i mm10.chr16                   C 0 I 294
s canFam3.chr31                 28793860 132 -  39895921 TGTGGAACA---------------T----ACAGATGGCTTCCCCACACTTTTGATGATGACAGTA-------GTATTTTC-CATTCTCTTTTTATTAAAAAAAACAAAAAACCTTCATTTAAA----------AAGAGAGCATTATATCAACAAATCATAAAATTTAAA
i canFam3.chr31                C 0 I 16
s dasNov3.JH568778               6693087 132 +   6883506 TGTGGGTCA---------------TTTAGATATTCTTTCTA----CAGCTTAGACAATGTAAGTATA---------TTTA-CATTAACCTATCA----ATAAAATGTA----CTTCATTAAAAATGGATAATGAAGAAAACATCATATTGACTAATTATACAACTTAAA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30880836 388 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=257977.000000
s hg38.chr14_GL000009v2_random    184931 38 +    201709 AGGCACCAG-AAAAAAACAATTTATTTAAAACATTCCTG
s panTro5.chr9                  41874999 38 + 116767853 AGGCACAAG-AAAAAAACAATTTATTTGAAACATTCCTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842490 38 + 205426864 AGACACAAG-AAAAAAACAATTTATTTAAAACATTCCTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2118 38 +  12760026 AGACACAAG-AAAAAAACAATTTATTTAAAACATTCCTA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115476 38 -  86207423 AGGCACAAA-AAAAACACAATTTATTTAAAACATTCCTG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271177 34 - 204787373 AGG----AG-AAAAAAACAATTTATTTAAAGCATTCCTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170399 34 - 192460366 AGG----AG-AAAAAAACAATTTATTTAAAGCATTCCTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189874 34 -  11645122 AGG----AG-AAAACAACACTTTATTTAAAGCATTCCTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175105 34 -   6739814 AGG----AG-AAAAAAACAATTTATTTAAAGCATTCCTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65597 35 - 101219884 AGG----AGAAAAAAAACAATTTATTTAAAGCATTCCTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187286 34 -    785044 AGG----AG-AAAAAAACAATTTATTTAAAGCATTCCTG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           76385 34 -  10971483 AGG----AG-AAAAAAACAATTTATTTAAAGCATTCCTG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10931780 38 -  13128814 AGGCACGAG-AAAAAACCAATTTGTTTTACACATTCCGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662745 38 +  14377064 AGGCACAAG-GAAAAACCAATTTGTTTTACACATTCCAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131093 38 -   9889416 AGGTACAAG-GAAAAACCAATTTGTTTTACACATTCCAG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20758052 33 +  38779656 AGACACAAG-AGAAAATGAGT---TTTAAAAACTTCC--
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28794008 27 -  39895921 AGGTAAAAA-AAAAAA-----------AAAAAGTTCCTA
i canFam3.chr31                I 16 C 0
s dasNov3.JH568778               6693219 34 +   6883506 --ATATATA-AGAAAAGCAATTTTTTTTAAG--TTCCCA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22705954 294 -  98207768 I
e micMur3.chr31                 30880836 388 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=207844.000000
s hg38.chr14_GL000009v2_random    184969 19 +    201709 TGTAAAAGTAGTCACCACT
s panTro5.chr9                  41875037 19 + 116767853 TGTAAAAGTAGTCACCACT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842528 19 + 205426864 TGTAAAAGTAGTCACCACT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2156 19 +  12760026 TGTAAAAGTAGTCACCACT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115514 19 -  86207423 TGTAAAAGTAGTCACCACT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271211 19 - 204787373 TGTAAAAGTAGTCACCACT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170433 19 - 192460366 TGTAAAAGTAGTCACCACT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189908 19 -  11645122 TGTAAAAGTAGTCACCACT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175139 19 -   6739814 TGTAAAAGTAGTCACCACT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65632 19 - 101219884 TGTAAAAGTAGTCACCACT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187320 19 -    785044 TGTAAAAGTAGTCACCACT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           76419 19 -  10971483 TGTAAAAGTAGTCACCACT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10931818 18 -  13128814 TGTAAAATTAGTCA-CACT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662783 18 +  14377064 TGTAAAATTAGTCA-CACT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131131 18 -   9889416 TGTAAAATTAGTCA-CACT
i aotNan1.NW_018487195v1       C 0 C 0
s mm10.chr16                    22706248 19 -  98207768 tgaatgaatAGGAATTACT
i mm10.chr16                   I 294 C 0
s canFam3.chr31                 28794035 19 -  39895921 CGTAAAATTAGTTACCACT
i canFam3.chr31                C 0 I 125
s dasNov3.JH568778               6693253 19 +   6883506 TGTAAAATTAGTTACCACT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30880836 388 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e otoGar3.GL873528              20758085  0 +  38779656 C

a score=444946.000000
s hg38.chr14_GL000009v2_random    184988  45 +    201709 CTTACT---------------------------------------------------------------ATTCTTC-AA--------ATATTTTTATTATATTTAAACACAAGCCTA
s panTro5.chr9                  41875056  45 + 116767853 CTTACT---------------------------------------------------------------ATTCTTC-AA--------ATATTTTTATTATATTTAAACACGAGCCTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842547  45 + 205426864 CTTACT---------------------------------------------------------------ATTCTTC-AA--------ATATTCTTATTCTATTTAAACACAAGCCTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2175  45 +  12760026 CTTACT---------------------------------------------------------------ATTCTTC-AA--------ATATTATTATTCTATTTAAACGCAAGCCTA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115533  45 -  86207423 CTTACT---------------------------------------------------------------ACTCTTC-AA--------CTATTTTTATTCTATTTAAATGCAAGCCTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271230  45 - 204787373 CTTACT---------------------------------------------------------------ATTCTTC-AA--------ATATTTTTATTCTATTTAAATGCAAGTCTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170452  45 - 192460366 CTTACT---------------------------------------------------------------ATTCTTC-AA--------ATATTTTTATTCTATTTAAATGCAAGTCTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189927  45 -  11645122 ATTACT---------------------------------------------------------------ATTCTTC-AA--------ATATTTTTATTCTATTTAAATGCAAGTCTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175158  45 -   6739814 ATTACT---------------------------------------------------------------ATTCTTC-AA--------ATATTTTTATTCTATTTAAATGCAAGTCTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65651  45 - 101219884 ATTATT---------------------------------------------------------------ATTCTTC-AA--------ATATTTTTATTCTATTTAAATGCAAGTCTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187339  45 -    785044 ATTACT---------------------------------------------------------------ATTCTTC-AA--------ATATTTTTATTCTATTTAAATGCAAGTCTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           76438  45 -  10971483 ATTACT---------------------------------------------------------------ATTCTTC-AA--------ATATTTTTATTCTATTTAAATACAAGTCta
i colAng1.NW_012123820v1       C 0 I 1483
s saiBol1.JH378168              10931836  45 -  13128814 TTTACT---------------------------------------------------------------AGTCTTC-CA--------CTATTTTTATTCTGTTTAAATGCAAGCCTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662801  45 +  14377064 CTTACT---------------------------------------------------------------AGTCTTC-CA--------CTGTTTTTATTCTGTTTAAATGCAAGCCTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131149  45 -   9889416 CTTACT---------------------------------------------------------------AGTCTTC-CA--------CTATTTTTATTCTGTTTCAATGCAAGCCTA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20758085  39 +  38779656 ---------------------------------------------------------------------AGTCTTC-AA--------GTATTCTTATCCTGTTTAAATGTAAGCCta
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22706267  46 -  98207768 TCTGCC---------------------------------------------------------------AATCTCCTGA--------GTATTATTTTCTTCTTTAAGCATGAGTCCA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28794179 116 -  39895921 cctacttctccctctgcctgtgtctctgcctctctttctcagtctgtgtctctcatgaataaataaataaatcttt-aaTAATATGTATATTTTTACCTCCTTTAAATGTAAGTCTA
i canFam3.chr31                I 125 C 0
s dasNov3.JH568778               6693272  45 +   6883506 CTTTCC---------------------------------------------------------------AGTCTTC-AA--------ATGTTTTTATCTTCTTTATATGTAAGCCTA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30880836 388 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=158108.000000
s hg38.chr14_GL000009v2_random    185033 18 +    201709 GTTTTATCTCGAGTGTCT
s panTro5.chr9                  41875101 18 + 116767853 GTTTTATCTCGAGTGTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842592 18 + 205426864 GTTTTATCTCGAGCGTCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2220 18 +  12760026 GTTTTATCTCGAGCGTCT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115578 17 -  86207423 G-TTTATCTCGAGTGTCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271275 18 - 204787373 GTTTTATCTCAGGTGTCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170497 18 - 192460366 GTTTTATCTCAGGTGTCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189972 18 -  11645122 GTTTTATCTCAGGTGTCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175203 18 -   6739814 GTTTTATCTCAGGTGTCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65696 18 - 101219884 GTTTTATCTCAGGTGTCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187384 18 -    785044 GTTTTATCTCAGGTGTCT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10931881 18 -  13128814 GTTTTATCTCAGGTGTGC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662846 18 +  14377064 GCTTTATCTCAGGTGTGT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131194 18 -   9889416 GTTTTATCTCAGGTGTGT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20758124 18 +  38779656 cttctctctgaaaaggct
i otoGar3.GL873528             C 0 I 710
s mm10.chr16                    22706313 18 -  98207768 GCTTTATCCCAGATGTGT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28794295 18 -  39895921 GCTCTATCCCAGTTTTGT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693317 17 +   6883506 GTTTTATC-CTGGTGTGT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30880836 388 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           76483 1483 -  10971483 I

a score=579345.000000
s hg38.chr14_GL000009v2_random    185051 76 +    201709 GACCTTG--------ATGATATTGTACA-CTTTAAACTTAG-AAAAA-TTGAACTCTATTGGAAATTTCCTACAGATCAGCTTTTCT
s panTro5.chr9                  41875119 77 + 116767853 GACCTTG--------ATGATATTGTACA-CTTTAAACTTAG-AAAAAATTGAACTCTTTTGGAAATTTCCTACAGATCAGCTTTTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842610 77 + 205426864 GACCTTG--------ATGATATTGTACA-CTTTAAACTTAG-AAAAAATTGAACTCTATTGGAAATTTCCTACACATCAGCTTTTCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2238 77 +  12760026 GACCTTG--------ATGATATTGTACA-CTTTAAACTTAG-AAAAAATTGAACTCTATTGGAAATTTCCTACACATCAGCTTTTCT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115595 77 -  86207423 GACCTTG--------ATGATATGGTATA-CTTTAAACTCAG-AAAAAATTGAACTCTATTGGAAATTTCCTACAGATCAGCTTTTCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271293 74 - 204787373 GATCT-----------TCATATTGTACA-CTTTAAACTTAG-AAAAAATTGAACTCTATTAAAAATTTCCTACAGATCAGCTTTTCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170515 74 - 192460366 GATCT-----------TCATATTGTACA-CTTTAAACTTAG-AAAAAATTGAACTCTATTAAAAATTTCCTACAGATCAGCTTTTCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          189990 74 -  11645122 GATCT-----------TCATATTGTACA-CTTTAAACTTAG-AAAAAATTGAACTCTATTAAAAATTTCCTACAGATCAGCTTTTCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175221 74 -   6739814 GATCT-----------TCATATCATACA-CTTTAAACTTAG-AAAAAATTGAACTCTATTAAAAATTTCCTACAGATCAGCTTTTCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65714 74 - 101219884 GATCT-----------TCATATCGTACA-CTTTAAACTTAG-AAAAAATTGAACTCTATTAAAAATTTCCTACAGATTAGCTTTTCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187402 74 -    785044 GATCT-----------TCATATCGTACA-CTTTAAACTTAG-AAAAAATTGAACTCTATTAAAAATTTCCTACAGATCAGCTTTTCT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10931899 75 -  13128814 GACCT-----------TGATATTACACATTTTTAAACGTAG-AAAAAATTGAACTCTATTGGAAATTTCCTACAGATCATCTTTTTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662864 75 +  14377064 GACCT-----------TGATATTACACA-TTTTAAACTTAGAAAAAAATGGAACTCTATTGGAAATTTCCTACAGATCAGCTTTTCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131212 74 -   9889416 GACCT-----------TGATATTACACA-TTTTAAACTTAG-AAAAAAATGAACTCTATTGGAAATTTCCTACAGATCAGCTTTTCT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20758852 62 +  38779656 GATCCTG--------GTGATATTATGAA-TTTTAAACCT-G-AAAAAAT--------------GATCTCTTACATATCACTTTTTTT
i otoGar3.GL873528             I 710 I 2824
s mm10.chr16                    22706331 82 -  98207768 GACCATGATGATACCATAACACCATATA-TTTTGTATAAGG-AAAAAAATGA--TCTGTTGG-CATTCATTACATATGAGCTTCTGT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28794313 73 -  39895921 AGCCC-----------TGATGATAAAAA-TTTGAAACTAAA-GAAAAAA-GATCTCTATTGGGCATTGCCTACATATCAGCTTATTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693334 77 +   6883506 --------GAATTAGGTTGCATCATAAA-TTTTAAACTTTTCAAAAAATCTATCTCTATTGG-CATTACTTTTATATAGGTTTTTCT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30880836 388 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           76483 1483 -  10971483 I

a score=682244.000000
s hg38.chr14_GL000009v2_random    185127  88 +    201709 AGATGCCAAGTGCC---------------TTGTTTCAGCCATGGTGATGACAGCAAATTGGGTTCTCAGGGATTCTGGCCTCTGGCATCATCTCAGTTGTTTA
s panTro5.chr9                  41875196  88 + 116767853 AGATGCCAAGCGCC---------------TTGTTTCAGCTGCGGTGATGACAGCAAATTGGGTTCTCAGGGATTCTGGCCTCTGGCATCATCTCAGTTGTTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842687  88 + 205426864 AGATGCCAAGTGCC---------------TTGTTTCAGCCACGGTGATGACAGCAAATTGGGTTCTCAGGGATTCTGGCCTCTGGCATCGTCTCAGTTGCTTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2315  88 +  12760026 AGATGCCAAGTGCC---------------TTGTTTCAGCCACGGTGATGACAGCAAATTGGGTTCTCAGGGATTCTGGCCTCTGGCATCGTCTCAGTTGTTTA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115672  87 -  86207423 AGACGCCAAGCGCC---------------TTGTTTTAGCCACGGTGATGACAGC-AATTGGGTTGTCAGGGATTCCGGCCTCTGGCATCATCTCAGTTGTTTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271367  88 - 204787373 AGATGCCAAGCACG---------------TTGTTTTGGCCACAGTGATGACAACAAATTGGGTTCTCAGGGATTTTGGCCTCTGGCATCATCTCAGTTGTTTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170589  88 - 192460366 AGATGCCAAGCACC---------------TTGTTTTGGCCACAGTGATGACAACAAATTGGGTTCTCAGGGATTTTGGCCTCTGGCATCATCTCAGTTGTTTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190064  88 -  11645122 AGATGCCAAGCACC---------------TTGTTTTGGCCACAGTGATGACAACAAATTGGGTTCTCAGGGATTTTGGCCTCTGGCATCATCTCAGTTGTTTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175295  88 -   6739814 AGATGCCAAGCACC---------------TTGTTTTAGCCACAGTGATGACAACAAATTGGGTTCTCAGGGATTTTGGCCTCTGGCATCATCTCAGTTGTTTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65788  88 - 101219884 AGACGCCAAGCACC---------------TTGTTTTAGCTACAGTGATGACAACAAATTGGGTTCTCAGGGATTTTGGCCTCTGGCATCATCTCAGTTGTTTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187476  88 -    785044 AGATGCCAAGCACC---------------TTGTTTTAGCCACAGTGATGACAACAAATTGGGTTCTCAGGGATTTTGGCCTCTGGCATCATCTCAGTTGTTTA
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10931974  88 -  13128814 CGATGCCAAGTGCC---------------TTATTTTAGCCACGGTGATGACAGCGAATTGGGTCCTCAGGGACTCTAGCCTCTGGCCTCATCTCAGTTGTTTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7662939  88 +  14377064 AGATGCCAAGCACT---------------TTATTTTAGCCACGGTGAAAACAGCAAATCGGGTCCTCAGGGACTCTAGCCTCTGGCGTCATCTCAGTTGTTTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131286  88 -   9889416 AGATGCCAAGCGCC---------------TTATTTTAGCCACGGTGATGACAGCAAATTGGGTCCTCAGGGACTCTAGCCTCTGGCGTCATCTCAGTTGTTTA
i aotNan1.NW_018487195v1       C 0 C 0
s mm10.chr16                    22706413  71 -  98207768 AGACACTGA-TGTC---------------TTGTTTTAATGACCAGGATGCCAGTGCCTTTGTACTTGAGCAACTAGAGTCTCAGTCA----------------
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28794386 102 -  39895921 ATATGCTAAATACCtttatttttttttatttttttaaGGCCTCATGATAGCAGCAAGTCAGGTAGTCAG-AACTCTGGCCTCTGGTATGGTCTTGATTGATTA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693411  45 +   6883506 GGATGCCAAATCTC-----------------------------------------------------AGGGAATCTAG-----GGTGTGGTCTAGTTTGGTTG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30880836 388 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e otoGar3.GL873528              20758914 2824 +  38779656 I
e colAng1.NW_012123820v1           76483 1483 -  10971483 I

a score=405732.000000
s hg38.chr14_GL000009v2_random    185215 40 +    201709 TAATTGAAGTTGGGTCTGATGAGAACGCAGCTTA-GATGCA
s panTro5.chr9                  41875284 40 + 116767853 TGATTGAAGTTGGCTCTGATGAAAACTCAGCTTA-GATGCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842775 40 + 205426864 TAATTGAAGTTGGCTCTGATGAGAACTCAGCTTA-GATGCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2403 40 +  12760026 TAATTGAAGTTGGCTCTGATGAGAACTCAGCTTA-GACGCA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115759 40 -  86207423 TAATTGAATTTGGATCTGATGAGAACTCAGCTTA-GATGCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271455 40 - 204787373 TGATTGAAGTTGGCTCTGATGAGAACTCAGCTTA-GATGCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170677 40 - 192460366 TGATTGAAGTTGGCTCTGATGAGAACTCAGCTTA-GATGCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190152 40 -  11645122 TGATTGAAGTTGGCTCTGATGAGAACTCAGCTTA-GATGCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175383 40 -   6739814 TGATTGAAGTTGGCTCTGATGAGAACTCAGCTTA-GATGCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65876 40 - 101219884 TAATTGAAGTTGGCTCTGAGGAGAACTCAGCTTA-GATGCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187564 40 -    785044 TGATTCAAGTTGGCTCTGATGAGAACTCAGCTTA-GATGCA
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10932062 40 -  13128814 TAATTGAAGTTGGCTCTGATGAGAACTCAGCTTA-GATGCC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663027 40 +  14377064 TAATTGAAGTTGGCTCTGATAAGAACTCAGCTTA-GATGCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131374 40 -   9889416 TAATTGAAGTTGGCTCTGATGAGAACTCAGCTTA-GATGCC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30881224 40 -  47401472 TAATTGAAGTTGGCTGTGATGAGGACTCAGCTTA-GATGCA
i micMur3.chr31                I 388 I 1965
s mm10.chr16                    22706484 40 -  98207768 TGATTCAAGTTGGCTATGATGAACATACAGCTTA-ACTGTA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28794488 35 -  39895921 -----TAACCTATCTTTGATGAGGGCTCCACTGA-GGTGCA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693456 38 +   6883506 TAACTGAGTTTGGG---AATGAGGGCTGAAAATGTGAAGCA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e otoGar3.GL873528              20758914 2824 +  38779656 I
e colAng1.NW_012123820v1           76483 1483 -  10971483 I

a score=576634.000000
s hg38.chr14_GL000009v2_random    185255 62 +    201709 TGGTGGGACTGCTGGGCTTAAGGCTGGCCTGCCAGGAGGTTGCATTGAGGTGTAACTAGGCA
s panTro5.chr9                  41875324 62 + 116767853 TGGTTGGACTGCTGGGCTTAAGGCTGGCCTGCCAGGAGGTTGCATTGAGATGTAACTAGGCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842815 62 + 205426864 TGGTTGGACTGCTGGGCTTAAGGCTGGCCTGCCAGGAGGTTGCATTGAGGTGTAACTAGGCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2443 62 +  12760026 TGGTTGGACTGCTGGGCTTAAGACTGGCCTGCCAGGAGGTTGCATTGAGATGTAACTAGGCA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115799 62 -  86207423 TGGTTGGACTGCTGGGCTTAAGGCTGGCCTGCCAGGAGGTTGCCTTGAGGTGTAACTAGGCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271495 62 - 204787373 TGGTTGGACTGCTGGACTTAAGGCTGGCCTGCCAGGAGGTTGCCTTGAGATGTAACTAGGGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170717 62 - 192460366 TGGTTGGACTGCTGGACTTAAGGCTGGCCTGCCAGGAGGTTGCCTTGAGATGTAACTAGGCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190192 62 -  11645122 TGGTTGGACTGCTGGACTTAAGGCTGGCCTGCCAGGAGGTTGCCTTGAGATGTAACTAGGGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175423 62 -   6739814 TGGTTGGACTGCTGGACTTAAGGCTGGCCTGCCAGGAGGTTGCCTTGAGGTGTAACTAGGCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65916 62 - 101219884 TGGTTGGACTGCGGGACTTAAGGCTGGCCTGCCAGGAGGTTGCCTTGAGGTGTAACTAGGCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187604 62 -    785044 TGGTTGGACTGCTGGACTTAAGGCTGGCCTGCCAGGAGGTTGCCTTGAGGTGTAACTAGGCA
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10932102 62 -  13128814 TGGTTGGTCTGCTGGGCTTAAAGTTGGCCTTCTGGGAGGTTGCCTTGAGGTGTAACTAGGCA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663067 62 +  14377064 TGGTTGGTCTGCTGCGCTTAAGGTTGGCCTTCCGGGAGGTTGCCTTGAGGTGTAACTAGGCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131414 62 -   9889416 TGGTTGGTCTGCTGGGCTTAAGGTTGGCCTTCTGGGAGGTTGCCTTGAGGTGTGACTAGGCA
i aotNan1.NW_018487195v1       C 0 C 0
s mm10.chr16                    22706524 48 -  98207768 ----TGAGTGGCTTGGTTT----------TGCCCAGAGACTGTTCTGAAACGTATTTAGGTG
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28794523 62 -  39895921 TGATTGGGCACTTGGGCTTAAGGGTGACCTGCTCAGAGGTTGCCTTGAGATCTAACTCAACA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693494 61 +   6883506 -GATTGGAGACCTGGGCTTAAGACTGTCCTGCTGGTGAGTTGTCTTGAGGTGTACTTAGAAA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e otoGar3.GL873528              20758914 2824 +  38779656 I
e colAng1.NW_012123820v1           76483 1483 -  10971483 I

a score=68126.000000
s hg38.chr14_GL000009v2_random    185317 7 +    201709 AAGAAAG
s panTro5.chr9                  41875386 7 + 116767853 AAGAAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842877 7 + 205426864 AAGAAAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2505 7 +  12760026 AAGAAAG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115861 7 -  86207423 AAGAAAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271557 7 - 204787373 AAGAAAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170779 7 - 192460366 AAGAAAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190254 7 -  11645122 AAGAAAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175485 7 -   6739814 AAGAAAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65978 7 - 101219884 AAGAAAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187666 7 -    785044 AAGAAAG
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10932164 7 -  13128814 AAGAAAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663129 7 +  14377064 GAGAAAG
i cebCap1.NW_016107322v1       C 0 I 4
s aotNan1.NW_018487195v1         4131476 7 -   9889416 AAGAAAG
i aotNan1.NW_018487195v1       C 0 I 10
s canFam3.chr31                 28794585 7 -  39895921 AGGAGAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693555 7 +   6883506 AGGAGAG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22706572 0 -  98207768 C
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e otoGar3.GL873528              20758914 2824 +  38779656 I
e colAng1.NW_012123820v1           76483 1483 -  10971483 I

a score=13390.000000
s hg38.chr14_GL000009v2_random    185324 2 +    201709 AA
s panTro5.chr9                  41875393 2 + 116767853 AA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842884 2 + 205426864 AA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2512 2 +  12760026 AA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115868 2 -  86207423 AA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271564 2 - 204787373 AA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170786 2 - 192460366 AA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190261 2 -  11645122 AA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175492 2 -   6739814 AA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65985 2 - 101219884 AA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187673 2 -    785044 AA
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10932171 2 -  13128814 GA
i saiBol1.JH378168             C 0 I 1
s canFam3.chr31                 28794592 2 -  39895921 AG
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6693562 2 +   6883506 AA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22706572 0 -  98207768 C
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4131483 10 -   9889416 I
e otoGar3.GL873528              20758914 2824 +  38779656 I
e colAng1.NW_012123820v1           76483 1483 -  10971483 I
e cebCap1.NW_016107322v1         7663136 4 +  14377064 I

a score=14874.000000
s hg38.chr14_GL000009v2_random    185326 3 +    201709 GGA
s panTro5.chr9                  41875395 3 + 116767853 GGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842886 3 + 205426864 GGA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2514 3 +  12760026 GGA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115870 3 -  86207423 GGA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271566 3 - 204787373 GGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170788 3 - 192460366 GGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190263 3 -  11645122 GGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175494 3 -   6739814 GGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65987 3 - 101219884 GGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187675 3 -    785044 GGA
i manLeu1.NW_012099043v1       C 0 C 0
s canFam3.chr31                 28794595 2 -  39895921 AG-
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6693564 3 +   6883506 GGA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22706572 0 -  98207768 C
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4131483 10 -   9889416 I
e otoGar3.GL873528              20758914 2824 +  38779656 I
e colAng1.NW_012123820v1           76483 1483 -  10971483 I
e cebCap1.NW_016107322v1         7663136 4 +  14377064 I
e saiBol1.JH378168              10932173 1 -  13128814 I

a score=2800.000000
s hg38.chr14_GL000009v2_random    185329 1 +    201709 g
s panTro5.chr9                  41875398 1 + 116767853 g
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842889 1 + 205426864 g
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2517 1 +  12760026 g
i gorGor5.CYUI01015020v1       C 0 C 0
s cerAty1.NW_012001605v1          175497 1 -   6739814 G
i cerAty1.NW_012001605v1       C 0 I 6
s manLeu1.NW_012099043v1          187678 1 -    785044 G
i manLeu1.NW_012099043v1       C 0 I 6
s canFam3.chr31                 28794597 1 -  39895921 G
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693567 1 +   6883506 G
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22706572 0 -  98207768 C
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204271569 0 - 204787373 C
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4131483 10 -   9889416 I
e otoGar3.GL873528              20758914 2824 +  38779656 I
e colAng1.NW_012123820v1           76483 1483 -  10971483 I
e cebCap1.NW_016107322v1         7663136 4 +  14377064 I
e saiBol1.JH378168              10932173 1 -  13128814 I
e chlSab2.chr22                    65990 0 - 101219884 C
e macNem1.NW_012010856v1          190266 0 -  11645122 C
e macFas5.chr2                    170791 0 - 192460366 C
e nomLeu3.chr21                 42115873 0 -  86207423 C

a score=5152.000000
s hg38.chr14_GL000009v2_random    185330 7 +    201709 tttattg
s panTro5.chr9                  41875399 7 + 116767853 tttattg
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842890 7 + 205426864 tttattg
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2518 7 +  12760026 tttattg
i gorGor5.CYUI01015020v1       C 0 C 0
s canFam3.chr31                 28794598 7 -  39895921 TTGGTTG
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22706572 0 -  98207768 C
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204271569 0 - 204787373 C
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4131483 10 -   9889416 I
e otoGar3.GL873528              20758914 2824 +  38779656 I
e colAng1.NW_012123820v1           76483 1483 -  10971483 I
e dasNov3.JH568778               6693568 0 +   6883506 C
e cebCap1.NW_016107322v1         7663136 4 +  14377064 I
e saiBol1.JH378168              10932173 1 -  13128814 I
e manLeu1.NW_012099043v1          187679 6 -    785044 I
e chlSab2.chr22                    65990 0 - 101219884 C
e cerAty1.NW_012001605v1          175498 6 -   6739814 I
e macNem1.NW_012010856v1          190266 0 -  11645122 C
e macFas5.chr2                    170791 0 - 192460366 C
e nomLeu3.chr21                 42115873 0 -  86207423 C

a score=213189.000000
s hg38.chr14_GL000009v2_random    185337 419 +    201709 aggcactactgacaatagcaaagacttggaaccaacccaaatatccaacaatgatagactggattaagaaaatgtggcacataaacaccatggaatactatgcagccat--aaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcacaaggacaaaaaa----acaccgcatgttctcactcacaggtgggaattaaacaatgagaacacatggacacaggaagaggaacagcacacactggggcctattgtggggtgaggggctaggggagggaaagcattaggatatatacctaatgtaaatgacgaggtaatgggtgcagcacaccaacatgtcacatgtatacatatgaaacaaacctgcacgttgtgcacatgtaccctacaa
s panTro5.chr9                  41875406 423 + 116767853 aggcactactgacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccat--aaaaatgatgagttcatgtcctttgtagggacaaggatgaagctggaaaccatcattctcagcaaactatcacaaggacaaaaaaccaaacaccacatgttctcactcataggtgggaattaaacaatcagtacacatggacacaggaaggggaacatcacacactggtgcctgttgtggggtgacgggctaggggaggaaaagcattaggggatatacctaatgtaaacgacgagttaatgggtgcagcacaccaacatgtcacatgtatacatatgtaatgaacctgcacgttgtgcacatgtaccctagaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77842897 424 + 205426864 cggtactactcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatatggcacatatacaccatggaatactatgcagccataaaaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaagccaaacacagcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaagaaggggaacatcacacaccaaggcctgttgtggggtgaggggctaggggagggaaagcattaggagatatacctaatgtaaatgatgagttaatgggtgcagcac-ccaacatggcacatgtatacctatgtaacaaacctgcacgttgtgcacatgtaccctagaa
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2525 423 +  12760026 cggtactactcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccat-aaaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaaaccaaacacagcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacgccatgacctgttgtggggtgaggggctaggggagggaaagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcac-ccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaa
i gorGor5.CYUI01015020v1       C 0 C 0
e mm10.chr16                    22706572   0 -  98207768 C
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204271569   0 - 204787373 C
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4131483  10 -   9889416 I
e canFam3.chr31                 28794605   0 -  39895921 C
e otoGar3.GL873528              20758914 2824 +  38779656 I
e colAng1.NW_012123820v1           76483 1483 -  10971483 I
e dasNov3.JH568778               6693568   0 +   6883506 C
e cebCap1.NW_016107322v1         7663136   4 +  14377064 I
e saiBol1.JH378168              10932173   1 -  13128814 I
e manLeu1.NW_012099043v1          187679   6 -    785044 I
e chlSab2.chr22                    65990   0 - 101219884 C
e cerAty1.NW_012001605v1          175498   6 -   6739814 I
e macNem1.NW_012010856v1          190266   0 -  11645122 C
e macFas5.chr2                    170791   0 - 192460366 C
e nomLeu3.chr21                 42115873   0 -  86207423 C

a score=10721.000000
s hg38.chr14_GL000009v2_random    185756 16 +    201709 cttaaagtataacaaa
s panTro5.chr9                  41875829 16 + 116767853 cttaaagtataataaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843321 16 + 205426864 cttaaagtataataaa
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2948 16 +  12760026 cttaaagtataatgaa
i gorGor5.CYUI01015020v1       C 0 C 0
s otoGar3.GL873528              20761738 16 +  38779656 CCTGAGTTATAACAAG
i otoGar3.GL873528             I 2824 C 0
e mm10.chr16                    22706572  0 -  98207768 C
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204271569  0 - 204787373 C
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4131483 10 -   9889416 I
e canFam3.chr31                 28794605  0 -  39895921 C
e colAng1.NW_012123820v1           76483 1483 -  10971483 I
e dasNov3.JH568778               6693568  0 +   6883506 C
e cebCap1.NW_016107322v1         7663136  4 +  14377064 I
e saiBol1.JH378168              10932173  1 -  13128814 I
e manLeu1.NW_012099043v1          187679  6 -    785044 I
e chlSab2.chr22                    65990  0 - 101219884 C
e cerAty1.NW_012001605v1          175498  6 -   6739814 I
e macNem1.NW_012010856v1          190266  0 -  11645122 C
e macFas5.chr2                    170791  0 - 192460366 C
e nomLeu3.chr21                 42115873  0 -  86207423 C

a score=-3088.000000
s hg38.chr14_GL000009v2_random    185772  4 +    201709 aa------aa
s panTro5.chr9                  41875845  4 + 116767853 aa------aa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843337 10 + 205426864 aaaaaaTGAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2964  5 +  12760026 aaa-----aa
i gorGor5.CYUI01015020v1       C 0 C 0
s otoGar3.GL873528              20761754  4 +  38779656 GC------AA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22706572  3 -  98207768 -------AAG
i mm10.chr16                   C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204271569  0 - 204787373 C
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4131483 10 -   9889416 I
e canFam3.chr31                 28794605  0 -  39895921 C
e colAng1.NW_012123820v1           76483 1483 -  10971483 I
e dasNov3.JH568778               6693568  0 +   6883506 C
e cebCap1.NW_016107322v1         7663136  4 +  14377064 I
e saiBol1.JH378168              10932173  1 -  13128814 I
e manLeu1.NW_012099043v1          187679  6 -    785044 I
e chlSab2.chr22                    65990  0 - 101219884 C
e cerAty1.NW_012001605v1          175498  6 -   6739814 I
e macNem1.NW_012010856v1          190266  0 -  11645122 C
e macFas5.chr2                    170791  0 - 192460366 C
e nomLeu3.chr21                 42115873  0 -  86207423 C

a score=8943.000000
s hg38.chr14_GL000009v2_random    185776 6 +    201709 agaaGG
s panTro5.chr9                  41875849 6 + 116767853 agaaGG
i panTro5.chr9                 C 0 I 1
s panPan2.chr3                  77843347 6 + 205426864 AGAAGG
i panPan2.chr3                 C 0 I 1
s gorGor5.CYUI01015020v1            2969 6 +  12760026 agaaGG
i gorGor5.CYUI01015020v1       C 0 I 1
s otoGar3.GL873528              20761758 6 +  38779656 AAGAGA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22706575 6 -  98207768 AGAAAG
i mm10.chr16                   C 0 I 1
s dasNov3.JH568778               6693568 6 +   6883506 AGAAGG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e rheMac8.chr2                 204271569 0 - 204787373 C
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4131483 10 -   9889416 I
e canFam3.chr31                 28794605 0 -  39895921 C
e colAng1.NW_012123820v1           76483 1483 -  10971483 I
e cebCap1.NW_016107322v1         7663136 4 +  14377064 I
e saiBol1.JH378168              10932173 1 -  13128814 I
e manLeu1.NW_012099043v1          187679 6 -    785044 I
e chlSab2.chr22                    65990 0 - 101219884 C
e cerAty1.NW_012001605v1          175498 6 -   6739814 I
e macNem1.NW_012010856v1          190266 0 -  11645122 C
e macFas5.chr2                    170791 0 - 192460366 C
e nomLeu3.chr21                 42115873 0 -  86207423 C

a score=3971.000000
s hg38.chr14_GL000009v2_random    185782 1 +    201709 G
s panTro5.chr9                  41875856 1 + 116767853 G
i panTro5.chr9                 I 1 C 0
s panPan2.chr3                  77843354 1 + 205426864 G
i panPan2.chr3                 I 1 C 0
s gorGor5.CYUI01015020v1            2976 1 +  12760026 G
i gorGor5.CYUI01015020v1       I 1 C 0
s nomLeu3.chr21                 42115873 1 -  86207423 G
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271569 1 - 204787373 G
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170791 1 - 192460366 G
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190266 1 -  11645122 G
i macNem1.NW_012010856v1       C 0 C 0
s chlSab2.chr22                    65990 1 - 101219884 G
i chlSab2.chr22                C 0 C 0
s otoGar3.GL873528              20761764 1 +  38779656 G
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22706582 1 -  98207768 A
i mm10.chr16                   I 1 I 2
s dasNov3.JH568778               6693574 1 +   6883506 A
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4131483 10 -   9889416 I
e canFam3.chr31                 28794605 0 -  39895921 C
e colAng1.NW_012123820v1           76483 1483 -  10971483 I
e cebCap1.NW_016107322v1         7663136 4 +  14377064 I
e saiBol1.JH378168              10932173 1 -  13128814 I
e manLeu1.NW_012099043v1          187679 6 -    785044 I
e cerAty1.NW_012001605v1          175498 6 -   6739814 I

a score=5159.000000
s hg38.chr14_GL000009v2_random    185783 1 +    201709 G
s panTro5.chr9                  41875857 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843355 1 + 205426864 G
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2977 1 +  12760026 G
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115874 1 -  86207423 G
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271570 1 - 204787373 G
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170792 1 - 192460366 G
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190267 1 -  11645122 G
i macNem1.NW_012010856v1       C 0 C 0
s chlSab2.chr22                    65991 1 - 101219884 G
i chlSab2.chr22                C 0 C 0
s saiBol1.JH378168              10932174 1 -  13128814 G
i saiBol1.JH378168             I 1 C 0
s otoGar3.GL873528              20761765 1 +  38779656 A
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6693575 1 +   6883506 G
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22706583 2 -  98207768 I
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4131483 10 -   9889416 I
e canFam3.chr31                 28794605 0 -  39895921 C
e colAng1.NW_012123820v1           76483 1483 -  10971483 I
e cebCap1.NW_016107322v1         7663136 4 +  14377064 I
e manLeu1.NW_012099043v1          187679 6 -    785044 I
e cerAty1.NW_012001605v1          175498 6 -   6739814 I

a score=22331.000000
s hg38.chr14_GL000009v2_random    185784 5 +    201709 -TTGGA
s panTro5.chr9                  41875858 5 + 116767853 -TTGGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843356 5 + 205426864 -TTGGG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2978 5 +  12760026 -TTGGG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115875 5 -  86207423 -TTGGG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271571 5 - 204787373 -TTGAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170793 5 - 192460366 -TTGAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190268 5 -  11645122 -TTGAG
i macNem1.NW_012010856v1       C 0 C 0
s chlSab2.chr22                    65992 5 - 101219884 -TTGAG
i chlSab2.chr22                C 0 C 0
s saiBol1.JH378168              10932175 5 -  13128814 -TTGGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663140 5 +  14377064 -TTGGG
i cebCap1.NW_016107322v1       I 4 C 0
s otoGar3.GL873528              20761766 5 +  38779656 -TTGGG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22706585 4 -  98207768 -CTGG-
i mm10.chr16                   I 2 C 0
s dasNov3.JH568778               6693576 5 +   6883506 GTTGG-
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4131483 10 -   9889416 I
e canFam3.chr31                 28794605 0 -  39895921 C
e colAng1.NW_012123820v1           76483 1483 -  10971483 I
e manLeu1.NW_012099043v1          187679 6 -    785044 I
e cerAty1.NW_012001605v1          175498 6 -   6739814 I

a score=4640.000000
s hg38.chr14_GL000009v2_random    185789 1 +    201709 -C
s panTro5.chr9                  41875863 1 + 116767853 -C
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843361 1 + 205426864 -C
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2983 1 +  12760026 -C
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115880 1 -  86207423 -C
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271576 1 - 204787373 -C
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170798 1 - 192460366 -C
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190273 1 -  11645122 -C
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175504 1 -   6739814 -C
i cerAty1.NW_012001605v1       I 6 C 0
s chlSab2.chr22                    65997 1 - 101219884 -C
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187685 1 -    785044 -C
i manLeu1.NW_012099043v1       I 6 C 0
s colAng1.NW_012123820v1           77966 1 -  10971483 -C
i colAng1.NW_012123820v1       I 1483 C 0
s saiBol1.JH378168              10932180 1 -  13128814 -C
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663145 1 +  14377064 -C
i cebCap1.NW_016107322v1       C 0 C 0
s otoGar3.GL873528              20761771 1 +  38779656 -C
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22706589 1 -  98207768 -C
i mm10.chr16                   C 0 C 0
s dasNov3.JH568778               6693581 1 +   6883506 G-
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4131483 10 -   9889416 I
e canFam3.chr31                 28794605 0 -  39895921 C

a score=70952.000000
s hg38.chr14_GL000009v2_random    185790 7 +    201709 AAAATTA
s panTro5.chr9                  41875864 7 + 116767853 AAAATTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843362 7 + 205426864 AAAATTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2984 7 +  12760026 AAAATTA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115881 7 -  86207423 AAAATTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271577 7 - 204787373 AAGATTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170799 7 - 192460366 AAAATTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190274 7 -  11645122 AAGATTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175505 7 -   6739814 AAAATTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    65998 7 - 101219884 AAAATAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187686 7 -    785044 AAAATTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           77967 7 -  10971483 AAAATTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932181 7 -  13128814 AAAATTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663146 7 +  14377064 AAAATTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131493 7 -   9889416 AAAATTA
i aotNan1.NW_018487195v1       I 10 C 0
s otoGar3.GL873528              20761772 6 +  38779656 -ATATTA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22706590 7 -  98207768 TAAAGTA
i mm10.chr16                   C 0 C 0
s dasNov3.JH568778               6693582 7 +   6883506 TAATTTA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28794605 0 -  39895921 C

a score=844664.000000
s hg38.chr14_GL000009v2_random    185797 88 +    201709 CCAACAATCTTCAACTATGAATTTGTA------TGAGTAGGGGCTTCCCACACCATCAGGCACTCCAAGTTGGAGAAACAAGGGATGTTGAATT
s panTro5.chr9                  41875871 88 + 116767853 CCAACAATCTTCAACTATGAATTTTTA------TGAGTAGGGGCTTCCCACACCATCAGGCACTCCAAGTTGGAGAAAGAAGGGATGTTGAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843369 88 + 205426864 CCAACAATCTTCAACTATGAATTTTTA------TGAATAGGGGCTTCCCACATCATCAGGCACTCCGAGCTGGAGAAACAAGGGATGTTGAATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            2991 88 +  12760026 CCAACGATCTTCAACTATGAATTTTTA------TGAGTAGGGGCTTCCCACACCATCAGGCACTCCGAGCTGGAGAAACAAGGGATGTTGAATT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115888 88 -  86207423 CCAACAATCTTCAACTATGAATTTTTA------TGAGTAGGGGCTTCCCACACCATCAGGCACTCTGAGCTGGAGAAACAAGGGATGTTGAATT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271584 94 - 204787373 CCAACAATCTTCAACTATGAATTTTTATTTTTGTGAGTAGAGGCTTCCCACACCGTCAGGCACTCTGAACTGGAGAAACAGGGGATGTCGAATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170806 94 - 192460366 CCAACAATCTTCAACTATGAATTTTTATTTTTGTGAGTAGAGGCTTCCCACACCGTCAGGCACTCTGAACTGGAGAAACAGGGGATGTCGAATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190281 94 -  11645122 CCAACAATCTTCAACTATGAATTTTTATTTTTGTGAGTAGAGGCTTCCCACACCGTCAGGCACTCTGAACTGGAGAAACAGGGGATGTCGAATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175512 94 -   6739814 CCAACAATCTTCAACTATGAATTTTTATTTTTGTGAGTAGGGGCTTCCCACACCGTCAGGCACTCTGAGCTGGAGAAACAGGGGATGTCGAATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66005 93 - 101219884 CTAACAATCTTCAACTATGAATTTTTATTTTTGTGAGTAGTGGCTTCCCACACCATCAGGCACTCTGAGCTGGAGAAACA-GGGATGTCGAATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187693 91 -    785044 CCAACAATCTTCAACTATGAATTTTTATTTTTGTGAGTAGGGGCTT-CCACACCATCAGGCACTCTGAGCTGGAGAAAC--GGGATGTCGAATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           77974 65 -  10971483 CCAACAATCTTCAACTATGAATTTTTA------TGAGTAGGGGCTTCCCACACCATCA-----------------------GGGATGTCAAATT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932188 88 -  13128814 TCAACCGTTTTCAACTATGAATTTTCA------TGAGTAGGGGCTTCCAACACCTTCAGGCACTCTGAGCTGGAAAAGCAAGGGATGTTGAATT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663153 88 +  14377064 TCAACAGTTTTCAATTATGAATTTTTA------TGAGTAGGGACTTCCAACACCGTCAGTCACTCTGAGCTGGAAAAGCAAGGGATGTTGAATT
i cebCap1.NW_016107322v1       C 0 I 38
s aotNan1.NW_018487195v1         4131500 88 -   9889416 TCAACAATTTTCAACTATGAATTTTTA------TGAGTAGGGGCTTCCAACACCATCAGATACTCTGAACTGGAAAAGCAAGGGATGTTGAATT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20761778 87 +  38779656 CTAACAAATCTGAACTGTGAGTTGTTA------TTAGTAGAGGTTT-CAATACTATCAGGTACAGTTATATGAAGAAATGAGGGATGTTGGGTT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22706597 81 -  98207768 TAAGCAATTGTGAACTCAGAGTTGTTT------TGAACACTGGCTTCTGACAGTATCAGGCATTCTGAGGTTGAGAGATAGTGAGCA-------
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28794605 87 -  39895921 CTAACAATTTTGAACTATGAGTTGTTT------TGAGTCAAG-CTTCCAACACCATCAAACATCCTGATATGAAGAAACAAAGGATGGTGAGTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693589 68 +   6883506 CTAAAAATGTTGAA---TGAAT--------------GTATGGGCTTC---------CAGGCACTCTGAGGTGGAGAAAGTAGGGATGTTGAGTT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=88332.000000
s hg38.chr14_GL000009v2_random    185885 14 +    201709 GAAAGTT-TAATTTT
s panTro5.chr9                  41875959 14 + 116767853 GAAAGTT-TAATTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843457 14 + 205426864 GAAAGTT-TAATTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3079 14 +  12760026 GAAAGTT-TAATTTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115976 14 -  86207423 GAATGTT-TAGCTTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271678 14 - 204787373 GAACGTT-TACGTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170900 14 - 192460366 GAACGTT-TACGTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190375 14 -  11645122 GAACGTT-TACGTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175606 14 -   6739814 GAACGTT-TACGTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66098 14 - 101219884 GAACATT-TACGTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187784 14 -    785044 GAACGTT-TACGTTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78039 14 -  10971483 GAACGTT-TACATTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932276 15 -  13128814 AAATGTTGTGAATTT
i saiBol1.JH378168             C 0 I 23
s aotNan1.NW_018487195v1         4131588 15 -   9889416 AAATGTTCTGAATTT
i aotNan1.NW_018487195v1       C 0 I 23
s otoGar3.GL873528              20761865 14 +  38779656 GAGTATT-TAATGTG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22706678 14 -  98207768 AAATGTT-TTAGTCT
i mm10.chr16                   C 0 I 2
s canFam3.chr31                 28794692 14 -  39895921 GAGCATT-TAGTTTG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693657 14 +   6883506 GAGCATT-TAATTTG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e cebCap1.NW_016107322v1         7663241 38 +  14377064 I

a score=89043.000000
s hg38.chr14_GL000009v2_random    185899 16 +    201709 TTAGGCTTGATAGTCA
s panTro5.chr9                  41875973 16 + 116767853 TTAGTCTTGATAGTCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843471 16 + 205426864 TTAGGCTCGATAGTCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3093 16 +  12760026 TTAGGCTTGATAGTCA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42115990 16 -  86207423 TTAGGCTTGATAGTCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271692 12 - 204787373 TTAGGTTTGAT----A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170914 12 - 192460366 TTAGGTTTGAT----A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190389 12 -  11645122 TTAGGTTTGAT----A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175620 12 -   6739814 TTAGGTTTGAT----A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66112 12 - 101219884 TTAGGTTTGAT----A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          187798 12 -    785044 TTAGGTTTGAT----A
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78053 12 -  10971483 TTAGGTTTGAT----A
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932314 16 -  13128814 TTAGGCTTGATAGTCA
i saiBol1.JH378168             I 23 C 0
s cebCap1.NW_016107322v1         7663279 16 +  14377064 TTAGGCTTGATAGTCA
i cebCap1.NW_016107322v1       I 38 C 0
s aotNan1.NW_018487195v1         4131626 16 -   9889416 TTAGGCTTGATAGTCA
i aotNan1.NW_018487195v1       I 23 C 0
s otoGar3.GL873528              20761879 16 +  38779656 TTTGGCTTAGTAATTA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22706694 15 -  98207768 TCCAGTTGGAGCCT-A
i mm10.chr16                   I 2 C 0
s canFam3.chr31                 28794706 16 -  39895921 TTTGAGTTGGCAGttt
i canFam3.chr31                C 0 I 258
s dasNov3.JH568778               6693671 16 +   6883506 CTTGCTTTGGTGGCTA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=1336724.000000
s hg38.chr14_GL000009v2_random    185915 151 +    201709 GATTAGGGAAGT-TTTGGGTACACCTTTCCCACTCTAGAG-CCCTCTCCCTAACTCAGGGCCAATTTGGGACATgggctcagtggaa----aagagtg----tcaagatcaattagaaatatccatcatgaacataggaggcag--gCA-TTCTGG-CCAAGGG--G
s panTro5.chr9                  41875989 151 + 116767853 GATTAGGGAAGT-TTTGGGTACACCTTTCCCACTCTAGAG-CCCTCTCCCTAACTCACGGCCAATTTGGGACATgggctcaatggaa----aagagtg----ccgagatcaattagaaatatccatcatgaacataggaggcag--gCA-TTCTGG-CCAAGGG--G
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843487 151 + 205426864 GATTAGGGAAGT-TTTGGGTACACCTTTCCCACTCTAGAG-CCATCTCCCTAACTCAGGGCCAATTTGGGGCATgggctaaatggaa----aagagtg----ccaagatcaattagaaatatccatcatgaacataggaggcag--gCA-TTCTGG-CCAAGGG--G
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3109 151 +  12760026 GATTAGGGAAGT-TTTGGGTACACCTTTCCCACTCTAGAG-CCCTCTTCCTAACTCAGGGCCAATTTGGGACATgggctaaatggaa----aagagtg----ccgagatcaattagaaatatccatcatgaacacaggaggcag--gCA-TTCTGG-CCAAGGG--G
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116006 151 -  86207423 GATTAGGGAAGT-TTTGGGTACACCTTTCCCACTCTAGAG-TCCTCTCCCTAACTCAGGGCCAATTTGGGACATgggctcaatggaa----aagagtg----ccgagatcaattagaaatatccatcatgaacataggaggcag--gCA-TTCTGG-CCAAAGG--G
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271704 149 - 204787373 GATTAGGGAAGT-TTTGGGTAAACCTTTCCCTCCCTAGTG-TCTTCTCCTTAACTTAGGGCCAACTTGGGACATGGGTTCAATGGAA----AAGAGTG----CCAAGATTAATGAGAAATATCCATCATGAACACCGG-GGCAG--ACA-TTCTGG-CCAAGGG---
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    170926 149 - 192460366 GATTAGGGAAGT-TTTGGGTAAACCTTTCCCTCCCTAGTG-TCTTCTCCTTAACTTAGGGCCAACTTGGGACATGGGTTCAATGGAA----AAGAGTG----CCAAGATTAATGAGAAATATCCATCATGAACACCGG-GGCAG--ACA-TTCTGG-CCAAGGG---
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190401 146 -  11645122 GATTAGGGAAGT-TTTGGGTAAACCTTTCCCTCCCTAGTG-TCTT---CTTAACTTAGGGCCAACTTGGGACATGGGTTCAATGGAA----AAGAGTG----CCAAGATTAATGAGAAATATCCACCATGAACACCGG-GGCAG--ACA-TTCTGG-CCAAGGG---
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175632 148 -   6739814 GATTAGGGAAGT-TTTGGGTAAACCTTTCCCTCCCTAGTG-TCTTCTCCTTAACTTAGGGCCAACGTGGGACATGGGCTCAATGGAA----AAGAGTG----CCAA-ATTAATGAGAAATATCCATCATGAACATCGG-GGCAG--ACA-TTCTGG-CCAAGGG---
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66124 151 - 101219884 GAATAGGGAAGT-TTTGGGTACACCTTTCCCTCCCTAGTG-TCTTCTCCTTAACTTAGGGCCAACTTGGGACATGGGCTCAATGGAA----AAGAGTG----CCAAGATTAATGAGAAATATCCATCATGAACATTGGAGGCAG--ACA-TTCTGG-CCAAGGGG--
i chlSab2.chr22                C 0 I 130
s manLeu1.NW_012099043v1          187810 150 -    785044 GATTAGGGAAGT-TTTGGGTTAACCTTTCCCTCCCTAGTG-TCTTCTCCTTAACTTAGGGCCAACGTGGGACATGGGCTCAATGGAA----AAGAGTG----CCAAGATTAATGAGAAATATCCATCATGAACATCGG-GGCAG--ACA-TTCTGG-CCAAGGGG--
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78065 151 -  10971483 GATTAGGGAAGT-TTTGGGTAAACTTTTCCCTCCCTCGTG-TCCTCTCCTTAACTTAGGGCCAACTTGGGACATGGATTCAATGGAA----AAGAGTG----CCAAGATTAATGAGAAATATCCATCATGAACATTGGAGGCAG--ACA-TTCTGG-CCGAGGG-G-
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932330 148 -  13128814 GATTAGGGAAG--TTTGGGTAAACCTTTCCCACTCTGGAG-TCCTCTCCCTAACTCTAGGCCAATTGGGGATATGGGCTCAATGAAA----AAGAATG-----CGAGATTAATTAGAAATATCTGTCATGAAGATAGGAGGCCA--TCA-TTCTGG-CCAAGGG---
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663295 149 +  14377064 GATTAGGGAAGT-TTTGGGTAAACCTTTCCCACTCTAGAG-TCCTCTCCCTAACTCCGGGCCATTTGGGGATATGGGCTCAATGAAA----AAGAATG-----CAAGATCAATTAGAAATATCCATCATGAACATAGGAGGCTG--TCA-TTCTGG-CCAAGGG---
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131642 150 -   9889416 GATTAGGGAAGT-TTTGGGTAAACCTTTCCCACTCTAGAG-TCCTCTCCTTAACTCCAGGCCAACTGGGGATATGGGCTCAATGAAA----AAGAATG-----CGAGGTCAATTAGAAATATCCGTCATGAACATAGGAGGCCG--TCATTTCTGG-CCAAGGG---
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20761895 142 +  38779656 GGTTAGGGAAGT-TTTAAGTAAACTACTTTCCTCTTA-------------TAACT-AGGGCCA-TCTGGAACACTAGCTCAATTGCAAAGTAAGAGTG----GTGGTATTAGTCAGAAATATTCATCATAAGCATCAGAGGAAGCATCA-TGTGGG-CCAAATG---
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22706709 130 -  98207768 CATTGGGGGAATGTTTGAGAAAAC--------------------------AACCTCAAGACAAGTATGGGACATGGGATTGATGACA----ACGTGTGTCTGTCTGGGCCAATTAGGAATAGCCATCCTGGATCCAGGAAGCAG--CAG-CTCTGG-CCATGTA---
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28794980 148 -  39895921 GAATAGGGAATT-TTTGGATAAACAATTTCCAATTT--TT-TATTCTACCTAATTCAGAGCCAATTTGGTACATGGGCTCAATGGAA----AACAGTG----CTGAGATCCAGCAGAAATACTCATT-TGAGCATAGGAGATAG--TCC-TTCTAGTCCAAGTG---
i canFam3.chr31                I 258 C 0
s dasNov3.JH568778               6693687 145 +   6883506 GGTTAAGGAACT-GTTGGACAAACATCTCCAGGTTTGTTATTTCTTTACCTAACTCAGGGCCAA------GCTTGGCTTAACAGGAA----CATAGTC----TTGAGCTCTGTTAGAAATACCTGTCATGAGCGAACA-AACTG--TCA-TTCTGAACCAACTG---
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=3971.000000
s hg38.chr14_GL000009v2_random    186066 1 +    201709 G
s rheMac8.chr2                 204271853 1 - 204787373 G
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171075 1 - 192460366 G
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190547 1 -  11645122 G
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175780 1 -   6739814 G
i cerAty1.NW_012001605v1       C 0 C 0
s saiBol1.JH378168              10932478 1 -  13128814 G
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663444 1 +  14377064 G
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131792 1 -   9889416 G
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20762037 1 +  38779656 G
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22706839 1 -  98207768 A
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28795128 1 -  39895921 G
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693832 1 +   6883506 A
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           78216 0 -  10971483 C
e manLeu1.NW_012099043v1          187960 0 -    785044 C
e chlSab2.chr22                    66275 130 - 101219884 I
e nomLeu3.chr21                 42116157 0 -  86207423 C
e panPan2.chr3                  77843638 0 + 205426864 C
e gorGor5.CYUI01015020v1            3260 0 +  12760026 C
e panTro5.chr9                  41876140 0 + 116767853 C

a score=1788189.000000
s hg38.chr14_GL000009v2_random    186067 172 +    201709 TGCGTCTTCCCACTTTGTAATCCAGAGTGCGATTT------CTTCTTGCTATCTGTC-CCTCCATAAATAAGCGTTGGGTGAAGGACAAGCTAGTTACCATTGAGGATGGAATGAA-ATTCTACCAGAATTGCA-AAATGAACTGAGAGCCACGAAAGTTTTCCTCTGTGAACC--AGCAGAG
s panTro5.chr9                  41876140 172 + 116767853 TGCGTCTTCCCACTTTGTAATCCAGAGTGCGATTT------CTTCTTGCTATCTGTC-CCTCCGTAAATAAGCGTTGGGTGAAGGACAAGCTAGTTACAACTGAGGATGGAAAGAG-ATTCTAGCAGAATTGCA-AAATGAACTGAGAGCCACGAAAGTGTTCCTCTGTGAACC--AGCAGAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843638 172 + 205426864 TGCGTCTTCCCGCTTTGTAATCCAGAGTGCGATTT------CTTCTTGCTGTCTGTC-TCTCCATAAATAAGCGTTGGGCGGAGGACAAGCTGGTTACAATTGATGATGGAACGAG-ATTCTAGCAGAATTGCA-AAATGAACTGAGAGCCACAAAAATGTGCCTCTGTGAACC--AGCAGAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3260 172 +  12760026 TGCGTCTTCCCACTTTGTAATCCAGAGTGCGATTT------CTTTTTGCTATCTGTC-TCTCCATAAATAAGCGTTGGGCGGAGGACAAGCTGGTTACAATTGAGGATGGAGCGAG-ATTCTAGCAGAATTGCA-AAATGAACTGAGAGCCACAAAAATATGCCTCTGTGAACC--AGCAGAG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116157 170 -  86207423 TGTGTCTTCCCACTTTGTATTCCAGAGTGCGATTT------CTTCCTGCTATCTGTC-CCTCCATAAATAAGCGTTGGGTGGAGAACAAGCTGGTTACAATCGAGGATGGAACGAG-ATTCTAGCAGAATTGCA-GAATGAACTGAGAGCCACCAAAGTGTGCCTC--TGAACC--AGCAGAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204271854 172 - 204787373 TGCGTCTTCCCACTTTGTAATCCAGAGTGCGATTT------CTTCTTGCTATCTGCC-CCTCCATAAATAAGTGTTCAGCAGAGGACAAGCTGGTTACAGTTGAGGATGGAACGAG-ATTCTAGCAGAATTGCA-AAATGAACTGAGAGCCACGAAGGTGTCCCTCTGTGAACC--AGCAGAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171076 172 - 192460366 TGCGTCTTCCCACTTTGTAATCCAGAGTGCGATTT------CTTCTTGCTATCTGCC-CCTCCATAAATAAGTGTTCAGCAGAGGACAAGCTGGTTACAGTTGAGGATGGAACGAG-ATTCTAGCAGAATTGCA-AAATGAACTGAGAGCCACGAAGGTGTCCCTCTGTGAACC--AGCAGAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190548 172 -  11645122 TGCGTCTTCCCACTTTGTAATCCAGAGTGCGATTT------CTTCTTGCTATCTGCC-CCTCCATAAATAAGTGTTCAGCAGAGGACAAGCTGGTTACAGTTGAGGATGGAACGAG-ATTCTAGCAGAATTGCA-AAATGAACTGAGAGCCACAAAGGTGTCCCTCTGTGAACC--AGCAGAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175781 172 -   6739814 CACGTCTTCCTACTTTGTAATCCAGAGTGCGATTT------CTTCTTGCTATCTGTC-CCTCCATAAATAAGTGTTCAGCAGAGGACAAGCTGGTTACAGTTGAGGATGGAACGAG-ATTCTAGCAGAATTGCA-AGATGAACTGAGAGCCACAAAGGTGTCCCTCTGTGAACC--AGCAGAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66405 172 - 101219884 TGCGTCTTCCCACTTTGTAATCCAGAGTGCGCTTT------CTTCTTGCTATCTGTC-CCTCCATAAATAAGTGTTCAGAAGAGGACAAGCTGGTTACAGTTGAGGATGGAACGAG-ATTCTAGCAGAATTGCA-AAATGGACTGAGAGCCACAAAGGTGTCCCTCTGTGAACC--AGCAGAG
i chlSab2.chr22                I 130 C 0
s manLeu1.NW_012099043v1          187960 172 -    785044 CACGTCTTCCCACTTTGTAATCCAGAGTGCGATTT------CTTCTTGCTGTCTGCC-CCTCCATAAATAAGTGTTCCGCAGAGGACAAGCTGGTTACAGTTGAGGATGGAACGAG-ATTCTAGCAGAATTGCA-AAATGAACTGAGAGCCACAAAGGTGTCCCTCTGTGAACC--AGCAGAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78216 172 -  10971483 TGCGTCTTCCCACTTTGTAATCCAGAGTGCGATTT------CTTCTTGCTATCTGTC-CCTCCATAAATAAGTGTTCAGCAGAGGACAAGCTGGTTACAATTGAGGATGGAACGAG-ATTCTAGCAGAATTGCA-AAATGAACTGAGAGCCACAAAAGTGTCCGTCTGCGAACC--AGCAGAG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932479 172 -  13128814 TGCTGCTTCCCACTTTGTAATCCAGAGTGTGATTT------CTTCTTGCTGTCTGTC-CCTCCATGAATAAGTGTTGGGCAGATGACAAGGTGGTTGCAACTAAGGATGGAAGGAG-AGTCTATCAGAATTGCA-AAATGAGCTGAGAGCCACCAAAATGTCCCTCTGTGAACC--AGAAGAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663445 172 +  14377064 TGCTTCTTCCCACTTTGTAATCCAGAGTGTGATTT------CTTCTTGCTGTCTGCC-CCTCCATGAATAAGTGTTGGGCAGACGACAAGCTGGTTACAACTAAGGATGGAAGGAG-AGTCTAGCAGAATTGCA-AAATGAGTTGAGAGCCACCAGAGTGCCCCTCTGTGAACC--AGGAGAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131793 172 -   9889416 TGTTTCTTCCCACTTTGTAATCCAGAGTGTGATTT------CTTCTTACTGTCTGTC-ACTCCATGAATAAGTGTTGGGCAGACGACAAGCTGGTTACAACTAAGGATGGAAGGAG-AGTCTAGCAGAATTGCA-AAATGAGCTGAGAGCCACCAAAGTGTCCCTCTGTGAACT--AGGAGAG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20762038 161 +  38779656 TGCTTCTTTTTCTTTTGTAATGTACAGTATGATTT------CTTTGCACTGTCTGCT-CCTCCATGAATGAGTGCTGGCCAGAGGACAAGGTGGTTAGACTGGAGGATGGAAAGAG-GTTCTAAC------------ATGATTTAAACCTCAGAGAAGTGTCTCTCTGTGCACT--GGGGAGG
i otoGar3.GL873528             C 0 I 2
s mm10.chr16                    22706840 169 -  98207768 TGCTTCTTTCCCATTTGAAATC-----TGGGCTCT------CCTTTTACTATGCATAGAAATTGTGAATGACTGTCTGGCAAGAGGCAAATTGGTCACACATGAGAATGGACAAAGAATTCTAGCAGAAGAGCAGAAAGGAATGGAAAGTCACAAGAGT---CCTCTTTGGATCGAAACTGAG
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28795129 167 -  39895921 TGCTTCTTTCTTCTT--ATATCTAGAGTGTGA---------CTTCTTGCTGATTGTC-CTTCTATGAGTGAATGTTGGGCAGAGGACAAGTTGCTTAGACTGGAGGATGAAAAGAG-GTTCTAGCAGAAGTGCA-AAATAAATTGAAAGTCACAAAATTGCCTATATGTGAACC--AGGAGAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693833 152 +   6883506 TACTATTTTCC-CTTTGTAATCCAGGGTGTGATTTTTGTGATTTTTTGTTGTC---C-TGTCCATTAGTGA--GTTGGGCAAAGGGTGGGTTTGCT---------------------TTGTTAACAAGTGAAGA-TAATGAATTGAGAGCCATAGCAGTGTCCCTCTGTGAACC--AAGAGAA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           81125 8467 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=-3761.000000
s hg38.chr14_GL000009v2_random    186239 3 +    201709 AGA
s panTro5.chr9                  41876312 3 + 116767853 AGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843810 3 + 205426864 ACA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3432 3 +  12760026 ACA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116327 3 -  86207423 AGA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272026 3 - 204787373 ATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171248 3 - 192460366 ATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190720 3 -  11645122 ATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175953 3 -   6739814 ATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66577 3 - 101219884 ATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188132 3 -    785044 ATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78388 3 -  10971483 ATC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932651 3 -  13128814 AAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663617 3 +  14377064 AAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131965 3 -   9889416 AAA
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           89592 3 +   1229009 AAA
i eulFla1.LGHW01000695v1       I 8467 I 222
s otoGar3.GL873528              20762201 3 +  38779656 AAA
i otoGar3.GL873528             I 2 I 1
s mm10.chr16                    22707010 1 -  98207768 A--
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 28795296 3 -  39895921 AGG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693985 3 +   6883506 AGA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=11484.000000
s hg38.chr14_GL000009v2_random    186242 2 +    201709 TC
s panTro5.chr9                  41876315 2 + 116767853 TC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843813 2 + 205426864 GC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3435 2 +  12760026 GC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116330 2 -  86207423 GC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272029 2 - 204787373 GC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171251 2 - 192460366 GC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190723 2 -  11645122 GC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175956 2 -   6739814 GC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66580 2 - 101219884 GC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188135 2 -    785044 GC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78391 2 -  10971483 GC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932654 2 -  13128814 GC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663620 2 +  14377064 GC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131968 2 -   9889416 GC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20762205 1 +  38779656 G-
i otoGar3.GL873528             I 1 C 0
s mm10.chr16                    22707011 1 -  98207768 -C
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28795299 2 -  39895921 GC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693988 1 +   6883506 -T
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30881264 1965 -  47401472 I
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           89595 222 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=2559367.000000
s hg38.chr14_GL000009v2_random    186244 217 +    201709 TGTGGAAGGCAAAGGAAGAGG-AGCCAAGaggccagataacattcctgcttcccctacattgtgagagtgaaattgtcagcaacctatatcagtaattaaccagaggctttttagagagtaagacttctgatagatacctc--aatagctgaagttgctcttc-agtactgcatataacctgtggacagatt-tTCATCAT---TATTAA---TTCATTTATTCAACA
s panTro5.chr9                  41876317 217 + 116767853 TGTGGAAGGCAAAGGAAGAGG-AGCCAAGaggccagataacattcctgcttcacctacattgtgagagtgaaattatcagcaacgtatatcagtaactaaccagaggctttttagagagtaagacttctgatagatacctc--aatagctgaagttgctcttc-agtactgcacataacctgtggacagatt-tTCATCAT---TATTAA---TTCATTTATTCAACA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77843815 216 + 205426864 TGTGGAAGGCAAAGGAAGAGG-AGCCAAaaggccagataacattcctgcttcccgtacattgtgggagtgaaattgtcagcaacctatgtcagtaattaacgagaggctttttagagagtaagacttctgatagacacctc--aatagctgaagtcactcttc-agtgctgcacacaacctgtggacagatt-tTCATCAT---TATTAA---TTCATTTATTCAAC-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3437 216 +  12760026 TGTGGAAGGCAAAGGAAGAGG-AGCCAAaaggccagataacattcctgcttcccctacattgtgggagtgaaattgtcagcaacctatgtcagcaattaacgagaggctttttagagagtaagacttctgatagacacctc--aatagctgaagtcgctcttc-agtgctgcacataacctgtggacagatt-tTCATCAT---TATTAA---TTCATTTATTCAAC-
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116332 217 -  86207423 TGTGGAAGGCAGAGGAAGAGG-AGCCAAGaggccagataatattcctgcttcccctacattgtgagagtgaaattgtcagcaacctatgtcagtaattaaccagaggctttttagagagtaagaattctgatagacacttc--aatagctgaagtcgctcttc-agtactgcacataacctgtgcacagatt-ttCATCAT---TATTAA---TTCATTTATTCAACA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272031 208 - 204787373 TGTGTAAGGCAAAGGAAGAGG-agtcgagaggccagatcacattcctgcttcccctacattgtgagagtgaaattgtcagcaacctgtatcaataattaaccagaggctttttagagagtaagacttctaatagctacctc---gtagctgaagtagctcttt-agtactgcacataacctgtg----GATT-TTCATCAT---T----A---TTCATTTATTCAACA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171253 208 - 192460366 TGTGGAAGGCAAAGGAAGAGG-agtcgagaggccagatcacattcctgcttcccctacattgtgagagtgaaattgtcagcaacctgtatcaataattaaccagaggctttttcgagagtaagacttctaatagctacctc---gtagctgaagtagctcttt-agtactgcacataacctgtg----GATT-TTCATCAT---T----A---TTCATTTATTCAACA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190725 208 -  11645122 TGTGGAAGGCAAAGGAAGAGG-agtcgagaggccagatcacattcctgcttcccctacattgtgagagtgaaattgtcagcaacctgtatcaataattaaccagaggctttttagagagtaagacttctaatagctacctc---gtagctgaagtagctcttt-agtactgcacataacctgtg----GATT-TTCATCAT---T----A---TTCATTTATTCAACA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          175958 208 -   6739814 TGTGGAAGGCAAAGGAAGAGG-agtcgagaggccagatcacattcctgcttcccctacattgtgcgagtgaaattgtcagcaacctgtatcaataattaaccagaggctttttagagagtaaggcttctaatagctacctc---gtagctgaagtagctcttt-agtactgcacataacctgtg----GATT-TTCATCAT---T----A---TTCATTTATTCAACA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66582 208 - 101219884 TGTGGAAGGCAAAGGAAGAGG-agtcaagaggccagatcacattcctgcttcccctacattgtgagagtgaaattgtcagcaacctgtatcaataattaaccagaggctttttagagagtaagactcctaatagatacctc---gtagctgaagtagctcttt-agtactgcacataacctgtg----GATT-TTCATCAT---T----A---TTCATTTATTCAACA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188137 208 -    785044 TGTGGAAGGCAAAGGAAGAGG-agtcgagaggccagatcacattcctgcttcccctacattgtgagagtgaaattgtcagcaacctgtatcaataattaaccagaggctttttagagagtaagacttctaatagctacctc---gtagctgaagtagctcttt-agtactgcacataacctgtg----GATT-TTCATCAT---T----A---TTCATTTATTCAACA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78393 207 -  10971483 TGTCGAAGACAAAGGGAGAGG-AGTCGAGaggccagataacattcctgcttcccc-acattgtgagagtgaaattgtcagcaacctatatcaataattaaccagaggctttttagagagtaagacttctaatagatacctc---atagctgaagtcgctcttt-agtactgcacataacctgtg----GATG-TTCATCAT---T----A---TTCATTTATTCAACA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932656 216 -  13128814 TGTAGAAGGCAAAGGAAGAGG-GGCCAAGaggccagatgacatccctgcttcccctaccttgtgagagtg-aattgtcagcaacccatatcaataattaaccagaggctttttagagagtaagacttctagtagacacctc--actagctgaagtcacccttc-agtactacatataacctgtgGATAGATT-TTCGTCAT---TATTAA---TTCATTTATTCAACA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663622 217 +  14377064 TGTGGAAGGCAAAGGAAGAGG-GGCCAAGaggccagatggcatccctgcttcccctaccttgtgagagtgaaattgtcagcaacccatatcaataattaaccagaggctttttagagagtaaggcttctaatagatacctc--actagctgaagtcattcttc-agtactacatataacctgtggacagatt-ttcatcat---tattag---TTCATTTATTCAACA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4131970 216 -   9889416 TGTGGAAGGCAAAGGAAGAGG-GGCCAa-aggccagataacatccctgcttcccctaccttgtgagagtgaaattgtcagcaacccatatcaataagtaatcagaggctttttggagagtaagacttctaatagatacctc--actagctgaagtcactcttc-agtactacatataacctgtggacagatt-tTCATCAT---TATTAA---TTCATTTATTCAACA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30883229 220 -  47401472 TGTGGAAGGCATAAGAAGAAG-AACCAAGAGGCCAGATAActccattgtttcctctaccttatgagggtgaaatagccagaaacacatacccataattgatcagaggctttttagagagtaagacttataatagatatctc--aacagatgagatccttcttc-agtattacacagcacctgaggacagatt-ttcaccatcagtaatta---atcatttatTCAACA
i micMur3.chr31                I 1965 C 0
s otoGar3.GL873528              20762206 218 +  38779656 TGTGGAAGGCATAGGAAGAAGAAAACAagagaccaggtaacttcactgcttcctttaacttacaagaatgtaattgttggaaacacatatccataattaatcaaaggtgctttagagagtaagacttctgatagatgcata--agtagctaaggtcctccttt-tgtattacacatggactgttgacagatt-tttatcat---taatta---gtcatttcttccaCA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22707013 221 -  98207768 TGGGAAAATTAAGAGAGGAGG-CGCTAAGAGGCCAAATAAcctgagtgctcctttacctctgtgaaagtgaagttgtgagcaacaaatatcaataattaatcagaagctttctggagagcaagatttctaatagatTGCTCTTCAGAGCCAGCGCCCCGCTTCTGGTACTTGTCATGGCCTAGTCAGAGATTAGTCATGCT---TAATTA---TTCATTTATCCAACA
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 28795301 212 -  39895921 TGTGGAAGGCAAAGGAAGAGA-AGCCAAGAGGCCAAATAAcctcactgctttctctaccttgtgagagtgaaattgttagtgatacatatcaataattaattagaggctttttaaaaggtaagacttctaatagatacctt--aatagctgaagtctctcctc-agtactacacatgacctgtggacagatt-ttagtcat---cATTAA--------TTATTCAACA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6693989 186 +   6883506 TGTAGAAGGCAGAGGAAGAAG-AGGCAGGAGGCTAGATAATTtcactgcttcctccactttgtgagagtgaaattgt-------------------gtaattagatgctttttagagagt-----------tagatgcctc--agtagctgaagttttgcctt----actacACAGGACCACTG-ACAGGTT-TTAGTAAT---TATTCATTTTTTATTTATTCAACA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulFla1.LGHW01000695v1           89595 222 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=36896.000000
s hg38.chr14_GL000009v2_random    186461 4 +    201709 GATA
s panTro5.chr9                  41876534 4 + 116767853 GATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844031 1 + 205426864 ---A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3653 1 +  12760026 ---A
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116549 4 -  86207423 GATA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272239 4 - 204787373 GATA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171461 4 - 192460366 GATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190933 4 -  11645122 GATA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176166 4 -   6739814 GATA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66790 4 - 101219884 GATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188345 4 -    785044 GATA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78600 4 -  10971483 GATA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932872 4 -  13128814 CATA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663839 4 +  14377064 CATA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132186 4 -   9889416 CATA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30883449 4 -  47401472 AATA
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           89817 4 +   1229009 AATA
i eulFla1.LGHW01000695v1       I 222 I 923
s otoGar3.GL873528              20762424 4 +  38779656 AATA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22707234 4 -  98207768 AATT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28795513 4 -  39895921 AACA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694175 4 +   6883506 AACA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    151167 2626 + 181502896 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=60752.000000
s hg38.chr14_GL000009v2_random    186465 4 +    201709 GATA
s panTro5.chr9                  41876538 4 + 116767853 GATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844032 4 + 205426864 GATA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3654 4 +  12760026 GATA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116553 4 -  86207423 GATA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272243 4 - 204787373 GATA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171465 4 - 192460366 GATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190937 4 -  11645122 GATA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176170 4 -   6739814 GATA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66794 4 - 101219884 GATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188349 4 -    785044 GATA
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    153793 4 + 181502896 GATA
i nasLar1.chr2                 I 2626 I 54
s colAng1.NW_012123820v1           78604 4 -  10971483 GATA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932876 4 -  13128814 GATA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663843 4 +  14377064 GATA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132190 4 -   9889416 GATA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30883453 4 -  47401472 GATA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20762428 4 +  38779656 GATA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22707238 4 -  98207768 GATA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28795517 1 -  39895921 G---
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694179 4 +   6883506 GATG
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=534053.000000
s hg38.chr14_GL000009v2_random    186469 52 +    201709 TTAAATTCAAGGCATAGTTCTAAACTATGCAGTCAATTAC-----------AAAAA--AAATAAT
s panTro5.chr9                  41876542 48 + 116767853 TTAAATTCAAGGCATAGTTCTAAACTATGCAGTCAATTAC-----------AAAAA--AA----T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844036 52 + 205426864 TTAAATTCAAAGCATAGTTCTAAAC--TGCAGTCAATTAC-----------AAAAAGTAAATAAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3658 54 +  12760026 TTAAATTCAAAGCATAGTTCTAAACTATGCAGTCAGTTAC-----------AAAAAATAAATAAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116557 54 -  86207423 TTAAATTCAAGGCATAGTTCTAAACTATGCAGTCAATTAC-----------AAAAAATAAATAAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272247 54 - 204787373 TTAAATTCAAGGCATAGTTCTAAACTATACTGTCAATTAC-----------AAAAAATAAATAAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171469 54 - 192460366 TTAAATTCAAGGCATAGTTCTAAACTATACTGTCAATTAC-----------AAAAAATAAATAAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190941 54 -  11645122 ATAAATTCAAGGCATAGTTCTAAACTATACTGTCAATTAC-----------AAAAAATAAATAAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176174 54 -   6739814 TTAAATTCAAGGCAGAGTTCTAAACTATACTGTCAATTAC-----------AAAAAATAAATAAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66798 54 - 101219884 TTAAATTCAAGGCATAGTTCTAAACTATACTGTCAATTAC-----------AAAAAATAAATAAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188353 54 -    785044 TTAAATTCAAGGCATAGTTCTAAACTATACTGTCAATTAC-----------AAAAAATAAATAAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78608 54 -  10971483 TTAAATTCAAGGCATAGTTCTAAACTATGCTGTCAATTAC-----------AAAAAATAAATAAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932880 54 -  13128814 TTAAATTCAAGGCAAAATTCTAAATTATGCAATCAATTAC-----------aaaaaaaaaataaa
i saiBol1.JH378168             C 0 I 2
s cebCap1.NW_016107322v1         7663847 50 +  14377064 TTAAATTCAAGGCAAAATTCTAAACTATGCAATCAATTAC---------------AAAAAATAAA
i cebCap1.NW_016107322v1       C 0 I 2
s aotNan1.NW_018487195v1         4132194 65 -   9889416 TTAAATTCAAGGCAAAATTCTAAACTATGCTATCAATTACAAGaaaaaaaaaaaaaaaaaaaaaa
i aotNan1.NW_018487195v1       C 0 I 2
s micMur3.chr31                 30883457 53 -  47401472 TTAAATTCAACATATAGTCCTAAACTATGCAGGCAATTAA-----------AAAGAAAAAAAAG-
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20762432 50 +  38779656 TTAAATTCAAGGCACAGTCCTAAACTATACAAGAAATTAA-----------AAGGGGGAAC----
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22707242 48 -  98207768 TTAAATTCAAAGCATGGCCCTAAATTATGCAGGGGACTAC-----------AGAAAAGG------
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28795518 49 -  39895921 CTAAGTTGAAGGAATAGTCTTAAACTATGCAGG-AATTAA-----------ATCAAACAGA----
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694183 47 +   6883506 TTAGATTCAAGGCACAGTCCAAAATGATGCAATGAATGTG-----------AAAGAAA-------
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    153797 54 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=18627.000000
s hg38.chr14_GL000009v2_random    186521 3 +    201709 AAT
s panTro5.chr9                  41876590 3 + 116767853 AAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844088 3 + 205426864 AAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3712 3 +  12760026 AAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116611 3 -  86207423 AAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272301 3 - 204787373 AAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171523 3 - 192460366 AAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190995 3 -  11645122 AAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176228 3 -   6739814 AAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66852 3 - 101219884 AAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188407 3 -    785044 AAT
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    153851 3 + 181502896 AAT
i nasLar1.chr2                 I 54 I 355
s colAng1.NW_012123820v1           78662 3 -  10971483 AAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932936 2 -  13128814 aa-
i saiBol1.JH378168             I 2 C 0
s cebCap1.NW_016107322v1         7663899 2 +  14377064 AA-
i cebCap1.NW_016107322v1       I 2 C 0
s aotNan1.NW_018487195v1         4132261 2 -   9889416 aa-
i aotNan1.NW_018487195v1       I 2 C 0
s micMur3.chr31                 30883510 2 -  47401472 -AT
i micMur3.chr31                C 0 I 1
s otoGar3.GL873528              20762482 2 +  38779656 -AT
i otoGar3.GL873528             C 0 I 1
s canFam3.chr31                 28795567 3 -  39895921 AAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694230 3 +   6883506 AAT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22707290 0 -  98207768 C
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=535891.000000
s hg38.chr14_GL000009v2_random    186524 48 +    201709 GAAGGACATTAGCTCTGCCTCATAGGACGTTAAAA-CTCTAGCTGCTAA
s panTro5.chr9                  41876593 48 + 116767853 GAAGGGCATTAGCTGTGCCTCATAGGACGTTAAAA-CTCTAGGTGCTGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844091 48 + 205426864 GAAGGGCATTAGCTCTGCCTCATAGGACGTTAAAA-CTCCAGCTGCTAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3715 48 +  12760026 GAAGGGCATTAGCTCTGCCTCATAGGACGTTAAAA-CTCTAGCTGCTAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116614 47 -  86207423 GAAGGGCATTAGCTC-GCCTCATAGGACGTTAAAG-CTCCAGCTGCTAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272304 48 - 204787373 GAAGGGCATTAGTTCTGCCTCATAGGATGTTAACA-CTCTAGCTGCTAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171526 48 - 192460366 GAAGGGCATTAGTTCTGCCTCATAGGATGTTAACA-CTCTAGCTGCTAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          190998 48 -  11645122 GAAGGGCATTAGTTCTGCCTCATAGGATGTTAACA-CTCTAGCTGCTAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176231 48 -   6739814 GAAGGGCATTAGTTCTGCCTCATAGGATGTTAACA-CTCTAGCTGCTAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66855 48 - 101219884 GAAGGGCATTAGTTCTGCTTCATAGGATGTTAACA-CTCTAGCTGCTAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188410 48 -    785044 GAAGGGCATTAGTTCTGCCTCATAGGATGTTAACA-CTCTAGCTGCTAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78665 48 -  10971483 GAAGGGCATTAGTTCTGCCTCATAGGATGTTAAAA-CTCTAGCTGCTAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932938 48 -  13128814 taaGGCCATTAGCTCTGCCTCAGAGGATGGTAGCA-CTCTATCTGCTAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663901 46 +  14377064 GAAGGCCATTAGCTCTGCCTC--AGGATGGTAGCA-CTCTATCTGCTAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132263 48 -   9889416 GAAGGCCATTAGCTCTGCCTGATAGGATGGTAGCA-CTCTATCTGCTAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30883513 48 -  47401472 GAAGGGTATTACTTCTGCCTCAGAGGACATTAAAA-TTCTAGTTGCTAA
i micMur3.chr31                I 1 I 166
s otoGar3.GL873528              20762485 48 +  38779656 TAAGTGTGTTTATTCTGCCTCATAGGACATTAAAA-CCCGAGCTGCTAA
i otoGar3.GL873528             I 1 C 0
s mm10.chr16                    22707290 39 -  98207768 AAAGGGCAT----CCTGCATTCTGGATTATTAAAT------GCTGCTGA
i mm10.chr16                   C 0 I 4
s canFam3.chr31                 28795570 49 -  39895921 GAAGGGCACTCTCCCTGCCTCATAGGACATTAAAAAACCTAGCTGCTAA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694233 45 +   6883506 GAAGGACATTGTTCCTCACTCATAGGACACTGAAA-CTGTGGATAA---
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    153854 355 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=1528552.000000
s hg38.chr14_GL000009v2_random    186572 177 +    201709 ATGAGACAAATAGG----GTTCCCACATCAAGTGC------CTGGGCTCCTGTTATAAACTGGGCTCTGCTTCCATTGGCTTCTCTTGTTTCTGTTTTGATAAACCCATCATTTG--GCTTAGTCCCTACC-----CTTGCCATGCT-C-ACC---CACC-AGT--AGG--TGGACCTCCTTGACCATAACTATAGA------CATAGAT
s panTro5.chr9                  41876641 177 + 116767853 ATGAGACAAATAGG----GTTCCCACATCAAGTGC------CTGGGCTCCTGTTATAACCTGGACTGTGCTTCCAATGACTTCTCTTGTTTCTGTTTTGGTAAACCCATCATTTG--GCTTAGTCCCTATC-----CTTGCCATGCT-C-ACC---CACC-AGT--AGG--TGGACCTCCTTGACCATAACTACAGG------CATAGAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844139 177 + 205426864 ATAAGACAAATAGG----GTTCCCACATCAAGTGC------CTGCGCTCCTGTTATAACCTGGACTCTGCTTCCAGTGGCTTCTCTTGTTTCTCTTTTGGTAAACCCATCATTTG--GGTTAGTCCCTATC-----CTTGCCATGGT-C-ATC---CACC-AGT--AGG--TGGACCTCCTTGACCATAACTACAGG------CATAGAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3763 177 +  12760026 ATGAGACAAATAGG----GTTCCCACATCAAGTGC------CTGCGCTCCTGTTATAACCTGGACTCTGCTTCCAATGGCTTCTCTTGTTTCTGTTTTGGTAAACCCATCATTTG--GCTTAGTCCCTATC-----CTTGCCATGGT-C-ACC---CACC-AGT--AGG--TGGACCTCCTTGACCATAACTACAGG------CATAGAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116661 177 -  86207423 ATGAGACAAGTTGG----GTTCCCACATCAAGTGC------CTGGGCTCCTGTTGTAACCTGGACTCTGCTTCCAATGGCTTCTCTTGTTTCTGTTTTGGTAAAGCCATCATTTG--GCTTAGTCCCTATC-----CTTGCCATGGT-C-ACC---CACC-AGC--AGG--TGGACCTCCTTGACCGTAACTACACG------CATAGAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272352 177 - 204787373 ATGAGACAAATAGG----GTTCCCGCATCGTGTGC------CTGGCCTCCTGTTATAACCTGGACTCTGCTTCCAGTGGCTTCTCTTGTTTCTGTTTTGGTAAACGCACCATTTG--GTTTAGTCCCTATC-----ATTGCCATGGT-C-ACC---CACC-TGT--AGG--TGGACCTCCTTGACTGTAGCTATGGG------CATAGAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171574 177 - 192460366 ATGAGACAAATAGG----GTTCCCGCATCGTGTGC------CTGGCCTCCTGTTATAACCTGGACTCTGCTTCCAGTGGCTTCTCTTGTTTCTGTTTTGGTAAACGCACCATTTG--GTTTAGTCCCTATC-----ATTGCCATGGT-C-ACC---CACC-TGT--AGG--TGGACCTCCTTGACTGTAGCTATGGG------CATAGAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191046 177 -  11645122 ATGAGACAAATAGG----GTTCCCGCATCGTGTGC------CTGGCCTCCTGTTATAACCTGGACTCTGCTTCCAGTGGCTTCTCTTGTTTCTGTTTTGGTAAACACACCATTTG--GTTTAGTCCCTATC-----ATTGCCATGGT-C-ACC---CACC-TGT--AGG--TGGACCTCCTTGACTGTAGCTATGGG------CATAGAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176279 177 -   6739814 ATGAGACAAATAGG----GTTCCCGCATCGTATGC------CTGGCCTCCTGTTATAACCTGGACTCTGCTTCCAGTGGCTTCTCTTGTTTCTGTTCTGGTAAACGCACCATTTG--GTTTAGTCCCTATC-----ATTGCCATGGT-C-ACC---CACC-TGT--AGG--TGGACCTCCTTGACTGTAGCTACAGA------CATAGAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    66903 177 - 101219884 ATGAGACAAATCGG----GTTCCTGCATCGTGTGC------CTGGCCTCCTGTTATAACCTGGACTCTGCTTCCAGTGGCTTCTCTTGTTTCTGTTCTGGTAAACGCACCATTTG--GTTTAGTCCCTATC-----ATTGCCGTGGT-C-ACC---CACC-TGT--AGG--TGGACCTCCTTGACTGTAGCTACAGC------CATAGAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188458 177 -    785044 ATGAGACAAATAGG----GTTCCCGCATCGTGTGC------CTGGCCTCCTGTTATAACCTGGACTCTGCTTCCGGTGGCTTCTCTTGTTTCTGTTCTGGTAAACGCACCATTTG--GTTTAGTCCCTATC-----ATTGCCATGGT-C-ACC---CACC-TGT--AGG--TGGACCTCCTTGACTGTAGCTACAGG------CATAGAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78713 175 -  10971483 ATGAGACAGATACG----GTTCCCGCATCAGGTAC------CTGGCCTCCTATTATAACCTGGACTCTGCTTCCAGTGGCTTCTCTC-TTTCTGTTCTGGTAAACGCACCATTTG--GTTTAGGCCCTATC-----ATTGCCATGGT-C-ACC---CCCC-TGT--AGG--TGGACCTCCTTGACTGTGGCTATAGG-------ATAGAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10932986 185 -  13128814 TTGAGACAAATAGG----GTTCCCACATTATGTGC------ATGGGCTCCTGTTATAACCTGGACTCTGCTTCCGATGACTTGTCTTGTTTCTGTTCTGGTAAGCCCATCA-TTG--GCTTAGACTCTATC-----CTTGCCATGGT-C-GCC---CCCCAACTTAAGG--TAGACCTCCTTGACTGTAGCTACAGGCATAGACATAGAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7663947 179 +  14377064 CTAAGACATATAGG----GTTCCCACATCATGTGC------TTGAGCTCCTGTTACAACCTGGACTCTGCTTCCGATGACTTGTCTTGCTTCTGTTCTGGTAAGCCCATCATTTG--GCTTAGACTCTATC-----CTTGCCATGGT-C-ACC---CCCC-ACTTAAGG--TAGAACTCCTTGACTGTAGCTACAGG------CATAGAC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132311 179 -   9889416 CTGAGACAAATAGG----GTTCCCGCATCATGTGC------CTGGGCTCCTGTTATAACCTGGACTCTGCTTCTGATGACTTGTCTTGTTTCTGTTCTGGTAAGCCCATCATTTG--GCTTAGACTCTATC-----CTTGCCATGGT-C-ACC---CCCC-ACTTAAGG--TAGACCTCCTTGACTGTAGCTACAGG------CATAGAC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20762533 169 +  38779656 -GGGCACAAATGGG----AATCACGCGACATGGGAATCATGCTGGGCTCCACTTGTACTAGGAGTTCTGCTTTTGATG--TTATTTTGTTCATTTTCTGGTAAATCTATTATTTG--ACTCACTCTCTACC-----CCTGCCGTGGC-C-ATCCTACATC-TGT------------CCCCATCACTATCTTCCTAGG------C------
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22707333 169 -  98207768 TGGAGACACAAGGG--------CTGCCTTTCATGT------TCGAACTGTAGCTATAAGCTGT-CTCTGCTGTTGATAGGTCCCCTGGTTCATGTTCATGTCAGTTTGTTATTTG--ATTCAGCCTCTACC-----CCTGCTGTA-----ACT---TGCT-TAT--ATGAATGAATGTCTCATGCGCTAA-TACTTG------TCTAGT-
i mm10.chr16                   I 4 C 0
s canFam3.chr31                 28795619 173 -  39895921 GTGAGAAAAATGAGGATAGATTCCATGTC-TATAC------CTGG-TTCCGGTTCTA-CTGAGACTCTG-TTGAGATCAGTTTCCTTGTTCTTGTTCTGG-----CTATCATTTG--GCACACTCCGTACT-----TCTGTCAGAGTAA-ACC---CACC-TGT--GGA--TGAAACTCTGTCACCCTAACTACCTA------TTTTGGT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694278 183 +   6883506 CTTAGACAAATAGG----GAGCCCAAGACATGTAC------CTGGGCACCAGTTATAACTGTCCCTCTGCTTCTGCTTTGTTC-CTTGTTTTTATACTTGT-AGCCTATCATTTAACACCCACACCCTACCCCCATCCCATCATGGC-CTGCA---TGCC-TCT--GTG--TGGACCTCCCTCTCCATAGCTACCTG------TTGAGAT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30883561 166 -  47401472 I
e nasLar1.chr2                    153854 355 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=300551.000000
s hg38.chr14_GL000009v2_random    186749 30 +    201709 CTTTGATTGTT----------T-CTTTTCAAATATTTGCTT
s panTro5.chr9                  41876818 30 + 116767853 CTTTGATTGTT----------T-ATTTTCAAATATTTGCTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844316 30 + 205426864 CTTTGATTGTT----------T-CTTTTCAAATGTTTGCTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3940 30 +  12760026 CTTTGATTGTT----------T-ATTTTCAAATGTTTGCTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116838 30 -  86207423 CTTTGATTGTT----------T-CTTTTCAAATGTTTGCTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272529 26 - 204787373 CT----TTGTT----------T-CTTTTCAAATGTCTGCTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171751 26 - 192460366 CT----TTGTT----------T-CTTTTCAAATGTCTGCTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191223 26 -  11645122 CT----TTGTT----------T-CTTTTCAAATGTCTGCTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176456 26 -   6739814 CT----TTGTT----------T-CTTTTCAAATGTCTGCTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67080 26 - 101219884 CT----TTGTT----------T-CTTTTCAAATGTCTGCTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188635 26 -    785044 CT----TTGTT----------T-CTTTTCAAATGTCTGCTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78888 26 -  10971483 CT----CTGTT----------T-CTTTTCAAATGTCTGCTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933171 30 -  13128814 CTTTGATTGTT----------T-CTTTTCAGATGTTTGCTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664126 30 +  14377064 CTTTGACTGTT----------T-CTTTTCAAATGTCTGCTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132490 30 -   9889416 CTTTGATTGTT----------T-CTTTTCAAATGTCTGCTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30883727 30 -  47401472 CTTTGATTGTT----------T-CTTTTGAAATGTTTGGTT
i micMur3.chr31                I 166 C 0
s otoGar3.GL873528              20762702 30 +  38779656 CTTTGAATGTT----------T-CTTTTGAAATATTCGCTT
i otoGar3.GL873528             C 0 I 252
s mm10.chr16                    22707502 25 -  98207768 CTTTGA---------------T-ATTTTTAAGTAGATGTAT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28795792 31 -  39895921 CTTTGATTATT----------TCCTTTTTTAATATTTGATT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694461 40 +   6883506 CCCTGATTGTTGTTATTTTTAT-TTTTTCTAATGTCTAGTT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    153854 355 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=1121899.000000
s hg38.chr14_GL000009v2_random    186779 101 +    201709 ACTTTAGAAGTGCAGTCAAATGTTGTTTGGACCATAAGACTCCGAGGCTGTGTG---TGGTTGAAACTGTCTTGAGACTCAAAGAGCTATTGAGGAAGGGATTT
s panTro5.chr9                  41876848 101 + 116767853 ACTTTAGAGCTGCAGTCAAATGTTGTTTGGACCGTAAGACTCTGAGGGTGTGTG---TGGTTGAAACTGTCTTGAGACTCAAAGAACTATTGAGGAAGGGATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844346 101 + 205426864 ACTTTAGAGCTGCAGTCAAATGTTGTTTGGACCATAAGACTCTGAGGCTGTGTG---TGGTTGAAACTGTCTTGAGACTCGAAGAGCTATTGAGGAAAGGATTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            3970 101 +  12760026 ACTTTAGAGCTGCAGTCAAATGTTGTTTGGACCATAAGACTCTGAGGCTGTGTG---TGGTTGAAACTGTCTTGAGACTCAAAGACCTATTGAGGAAAGGATTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116868 101 -  86207423 ACTTTAGAGCTGCAGTCGAATGTTGTTTGGACCATAAGACTCTGCGGCTGTGTG---TGGTTGAAGCTGTCTTGAGACTCAAAGAGCTATTGAGGAAGGGATTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272555  91 - 204787373 ACTTTAGAGCTGCAATCAAATGTTGTTTGGACCATAAGACTC--AGGCTATGTG---TGGTTGAAGCTGTCTTGAGACTCAAA--------GAGGAAAGGATTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171777  93 - 192460366 ACTTTAGAGCTGCAATCAAATGTTGTTTGGACCATAAGACTCTGAGGTTGTGTG---TGGTTGAAGCTGTCTTGAGACTCAAA--------GAGGAAAGGATTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191249  93 -  11645122 ACTTTAGAGCTGCAATCAAATGTTGTTTGGACCATAAGACTCTGAGGTTGTGTG---TGGTTGAAGCTGTCTTGAGACTCAAA--------GAGGAAAGGATTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176482 101 -   6739814 ACTTTAGAGCTGCAATCAAATGTTGTTTGGACCATAAGACTCTGAGGCTGTGTG---TGGTTGAAGCTGTCTTGAGACTCAAAGAGCTATTGAGGAAAGGATTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67106  93 - 101219884 ACTTTAGAGCTGCAATCAAATGTTGTTTGGACCATAAGACTCTGAGGCTGTGTG---TGGTTGAAGCTGTCTTGAGACTCAAA--------GAGGAAAGGATTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188661 101 -    785044 ACTTTAGAGCTGCAATCAGATGTTGTTTGGACCATAAGACTCTGAGGCTGTGTG---TGGTTGAAGCTGTCTTGAGACTCAAAGAGCTATTGAGGAAAGGATTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           78914 101 -  10971483 ACTTTAGAGCTGCAATCAAATGTTGTTTGGACCGTGAGACTCTGAGGCTGTGTG---TGCTTGAAGCTGTCTTGAGACTCAAAGAGCTATTGAGGAAAGAATTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933201 101 -  13128814 ACTTTAGAGCTGCAATCAAACGCGGTTTGGACCATAAGACTCTGAGGCTGTGTG---TGGTTGAAGCTGTCTTGAGACTCAAAGAGCTATTGAGGAAGGGATTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664156 101 +  14377064 ACTTTAGAGCTGCAATCGAATATGGTTTGGACCATAAGACTCCGAGGCTGTGTG---TGGTTGAAGCTGTCTTGAGACTCAAAGAGCTATTGAGGAAGGGATTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132520  99 -   9889416 ACTTTAGAGCCGCAATTGAATGTTGTTTGGACCTTGAGACT--GAGACTGTGTG---TGGTTGAAGCTGTCTTGAGACTCAAAGAGCTATTGAGGAAGGGATTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30883757 102 -  47401472 ACTTTACAGCTACAATGGATTGTGGTTTGGGCCATAAGACTCTAAGGCTAAGTG--ATGGCTGAAGCTGTCTTCAAACTCAAAGATCTTTTGGGGAAGGAATTT
i micMur3.chr31                C 0 I 29
s otoGar3.GL873528              20762984 102 +  38779656 gcCTTATAGCTACAGTAGAATGAGGTTTGGACCATAGAACTCTGAGGCTAAGTG--ATGGCTGAAGCTGTTTAGAAACTCAAAGACCTTCTAGGGAAGTAACTT
i otoGar3.GL873528             I 252 C 0
s mm10.chr16                    22707527  89 -  98207768 ------ACACTGAAATAAGATGGTTTC---ACTGTAAGACT--AAAGCTAAATA--CTAGCTGGAGTTGTTTTG--ACTCTAATACCTTCTGCTGAAAATACTT
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28795823 101 -  39895921 -ACTTATAACTGCAAGAAAATGTACTTTGAAACATGAGGCTCTGAGGCTCTGAGTAATGGATGCAACTGTCT--GGACTCAAAGACCTTTTTAGGGGAGGAACT
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6694501  96 +   6883506 ACTTTAGAGCTGCAATATAATGTGGTTTGGAACATAAGACTT--AACCTAAGTA--ATGACTGAAATTGCCTTG--ACTCAAA-AGTCACCTCGGAAAGAACT-
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    153854 355 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=29763.000000
s hg38.chr14_GL000009v2_random    186880 3 +    201709 GAT
s panTro5.chr9                  41876949 3 + 116767853 GGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844447 3 + 205426864 GGT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4071 3 +  12760026 GGT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116969 3 -  86207423 GGT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272646 3 - 204787373 GGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171870 3 - 192460366 GGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191342 3 -  11645122 GGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176583 3 -   6739814 GGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67199 3 - 101219884 GGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188762 3 -    785044 GGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79015 3 -  10971483 GGT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933302 3 -  13128814 GGT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664257 3 +  14377064 GGT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132619 3 -   9889416 GGT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20763086 3 +  38779656 AGT
i otoGar3.GL873528             C 0 I 1
s mm10.chr16                    22707617 2 -  98207768 AG-
i mm10.chr16                   I 1 I 3
s canFam3.chr31                 28795925 3 -  39895921 AGT
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6694597 2 +   6883506 -GT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30883859 29 -  47401472 I
e nasLar1.chr2                    153854 355 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=9090.000000
s hg38.chr14_GL000009v2_random    186883 1 +    201709 A
s panTro5.chr9                  41876952 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42116972 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272649 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171873 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191345 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176586 1 -   6739814 A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67202 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188765 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    154209 1 + 181502896 A
i nasLar1.chr2                 I 355 I 11
s colAng1.NW_012123820v1           79018 1 -  10971483 A
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933305 1 -  13128814 A
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664260 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132622 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28795928 1 -  39895921 G
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694599 1 +   6883506 A
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22707619 3 -  98207768 I
e micMur3.chr31                 30883859 29 -  47401472 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e otoGar3.GL873528              20763089 1 +  38779656 I
e panPan2.chr3                  77844450 0 + 205426864 C
e gorGor5.CYUI01015020v1            4074 0 +  12760026 C

a score=67427.000000
s hg38.chr14_GL000009v2_random    186884 11 +    201709 GCTGAACTCTT
s panTro5.chr9                  41876953 11 + 116767853 GCTGAACTCTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844450  9 + 205426864 GCCGAACTC--
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4074  9 +  12760026 GCCGAACTC--
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116973 11 -  86207423 GCTGAACTCTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272650 11 - 204787373 GCCGAACTCTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171874 11 - 192460366 GCCGAACTCTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191346 11 -  11645122 GCCGAACTCTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176587  9 -   6739814 GCCGAACTC--
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67203 11 - 101219884 GCCGAACTCTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188766  9 -    785044 GCCGAACTC--
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79019 11 -  10971483 GCCGAACTCTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933306 11 -  13128814 GCCAAGCTCTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664261 11 +  14377064 GCCAACTTCTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132623 11 -   9889416 GCCAAGCTCTT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20763090 11 +  38779656 GTTAGACTACT
i otoGar3.GL873528             I 1 I 4
s mm10.chr16                    22707622  9 -  98207768 TTCACATTC--
i mm10.chr16                   I 3 C 0
s canFam3.chr31                 28795929  7 -  39895921 GCCAAAC----
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694600 11 +   6883506 GCCAAACCCCT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30883859 29 -  47401472 I
e nasLar1.chr2                    154210 11 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=32262.000000
s hg38.chr14_GL000009v2_random    186895 2 +    201709 TT
s panTro5.chr9                  41876964 2 + 116767853 TT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844459 2 + 205426864 TT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4083 2 +  12760026 TT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116984 2 -  86207423 TT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272661 2 - 204787373 TT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171885 2 - 192460366 TT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191357 2 -  11645122 TT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176596 2 -   6739814 TT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67214 2 - 101219884 TT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188775 2 -    785044 TT
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    154221 2 + 181502896 TT
i nasLar1.chr2                 I 11 I 947
s colAng1.NW_012123820v1           79030 2 -  10971483 TT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933317 2 -  13128814 TT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664272 2 +  14377064 TT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132634 2 -   9889416 TT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20763105 2 +  38779656 CT
i otoGar3.GL873528             I 4 C 0
s mm10.chr16                    22707631 2 -  98207768 TT
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28795936 2 -  39895921 TT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694611 2 +   6883506 TT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30883859 29 -  47401472 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=92577.000000
s hg38.chr14_GL000009v2_random    186897 12 +    201709 GAAGATTTTCTC
s panTro5.chr9                  41876966 12 + 116767853 GAAGGTTTTCTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844461 12 + 205426864 GAAATTTGTCTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4085 12 +  12760026 GAAATTTTTCTC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116986 12 -  86207423 GAAGTTTTTCTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272663 12 - 204787373 GAAATTTTTCTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171887 12 - 192460366 GAAATTTTTCTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191359 12 -  11645122 GAAATTTTTCTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176598 12 -   6739814 GAAATTTTTCTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67216 12 - 101219884 GAAATTTTTCTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188777 12 -    785044 GAAATTTTTCTC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79032 12 -  10971483 GAAATTTTTCTC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933319 12 -  13128814 CAAAATGTTCTC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664274 12 +  14377064 GAAAATGTTCTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132636 12 -   9889416 GAAATTTTTCTC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20763107 12 +  38779656 GAAAATTTTCTT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22707634 10 -  98207768 GCAATTGTCT--
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 28795938 12 -  39895921 AAAAATTGTCTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694613  6 +   6883506 GAACAA------
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30883859 29 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=2697090.000000
s hg38.chr14_GL000009v2_random    186909 212 +    201709 TGTCTCTCACACATCTGGGGCTGAATAGCTTAAC-----GTTTAATTTCTACATCGACGATAGTTTAATAGCCATTCATGCAAATCAGTTCTGCTGTGAGTT-ATTATCCTACTCCAATACCAACTAACGCATTC----CTTAAATTTAGTGTACGTATAAATTCTACATGGTAAGTGAA-GCTGTCTTTATGAATTGCTGCTATAGAATATACTAGATTGTG
s panTro5.chr9                  41876978 218 + 116767853 TGTCTCTCACACATCTGGGGCTGAATAGCTTAATATATTGTTTAATTTCTACATCAATGATAGTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGGAGTTTATTATCCTACTCCAATAGCAAGTAACGCATTC----CTTAAATTTAGTGTACGTATAAATTCTACGTGGTAAGTGAA-GCTGTCTTTATGAATTGCTGCTATAGAATATACTAGATTGTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844473 218 + 205426864 TGTCTCTCACACATCTGGGGCTGAATAGCTGAATATATTGTTTAATTTCTACATCGATGATAGTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGGAGTTTATTATCCTACTCCAATAACAAGTAATGCGTTC----CTTAAATTTAGTGTACATATGAATTCTACATGGTAAGTGAA-GCTGTCTTTATGAATTGCTGCTATAGAATATACTAGATTGTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4097 218 +  12760026 TGTCTCTCACACATCTGGGGCTGAATAGCTGAATATATTGTTTAATTTCTACATCGAAGATAGTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGGAGTTTATTATCCTACTCCAATAACAAGTAATGCATTC----CTTAAATTTAATGTACATATAAATTCTACATGGTAAGTGAA-GCTGTCTTTATGAATTGCTGCTATAGAATATACTAGATTGTG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42116998 218 -  86207423 TGTCTCTCACACATCTGGGGCTGAATAGCTGAATATATTGTTTAATTTCTACATCGATAATAGTTTAATAGGCATTCATGCAAATAAGTTCTGCTGGGAGTTTATTGTCCTACTCCAATAACCAGTAATGCATTC----CTTGAATTCAGTGTAGGTATAAATTCTACATAGTAAGTGAA-ACTGTCTTTATGAATTACTGCTATAGAATATACTAGATTGTG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272675 217 - 204787373 TGTCTCTCACACATCT-GGGCTGAATAGCTGAATATATTGTTTAATTTCTACATTGATGATAGTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGGAGTTTATTATCCTACTCCAATAACAAGTAATGCATTC----CTTAAATTCAGTGTAGGTATAAATTCTACATGGTAAGTGAA-GCTGTCTTTATGAATTGCTGCTATAGAATATACTAGATTGTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    171899 217 - 192460366 TGTCTCTCACACATCT-GGGCTGAATAGCTGAATATATTGTTTAATTTCTACATTGATGATAGTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGGAGTTTATCATCCTACTCCAGTAACAAGTAATGCATTC----CTTAAATTCAGTGTAGGTATAAATTCTACATGGTAAGTGAA-GCTGTCTTTATGAATTGCTGCTATAGAATATACTAGATTGTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191371 217 -  11645122 TGTCTCTCACACATCT-GGGCTGAATAGCTGAATATATTGTTTAATTTCTACATTGATGATAGTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGGAGTTTATTATCCTACTCCAATAACAAGTAATGCATTC----CTTAAATTCAGTGTAGGTATAAATTCTACATGGTAAGTGAA-GCTGTCTTTATGAATTGCTGCTATAGAATATACTAGATTGTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176610 217 -   6739814 TGTCTCTCACACATCT-GGGCTGAATAGCTGAATATATTGTTTAATTTCTACATTGATGATAGTTTAATAGACATTCATGCAAATCAGTTCTGCTGGGAGTTTATTATCCTACTCCAATAACAAGTAATGCATTC----CTTAAATTCAGTGTGGGTATAAATTCTACATGGTAAGTGAA-GCTGTCTTTATGAATTGCTGCTATAGAATATACTAGATTGTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67228 217 - 101219884 TGTCTCTCACACATCT-GGGCTGAATAGCTGAATATATTGTTTAATTTCTACATTGATGATAGTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGGAGTTTATTATCCTACTCCAATAACAAGCAATGCATTC----CTTAAGTTCAGTGTAGGTATAAATTCTACATGGTAAGTGAA-GCTGTCTTTATGAATTGCTGCTATAGAATATACTAGATTGTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          188789 217 -    785044 TGTCTCTCAGACGTCT-GGGCTGAATAGCTGAATATATTGTTTAATTTCTACATTGATGATACTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGGAGTTTATTATCCTACTCCAATAACAAGTAATGCATTC----CTTAAATTCAGTGTAGGCATAAATTCTACATGGTAAGTGAA-GCTGTCTTTATGAATTGCTGCTATAGAATATACTAGATTGTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79044 217 -  10971483 TGTCTCTCACACATCT-GGGCTGAATAGCTGAATATATTGTTTAATTTCTACATTGATGATGGTTTAATAGGCAGTCATGCAAATCGGTTCTCCTGGGAGTTTATTATCCTACTCCAATGACAAGTAATGCATTC----CTTAAATTCAGTGTAGGTATAACTTCTACATGGTAAGTGAA-GCCGTCTTTATGAATTGCTGCTATAGAATATACTAGATTGTG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933331 216 -  13128814 --TGTCTCACACATCTGGGGCTGAATAGCTGAATATATTGTTTAATTTCTACATCAATGATAGTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGAAGTTTATTATCCTACTCCAATAACAAATAATGCATTT----CTTAAATTCAGGGTAGGTATAAATTCTGCATGGTACATGAA-GCTATCTTTATTAATTGCTTCTATAGAATATACCAGATTTTG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664286 218 +  14377064 TGTGTCTCACACATCTGGGGCTGAATAGCTGAATATGTTGTTTAATTTCCACATCAGTGATAGTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGGAGTTTATTATCCTACTCCAATAACAAATAATGCATTC----CTTAAATTCAGGGTAGGTATAAATTCTGCATGGTACATGAA-GCTATCTTTATGAATTGCTGCTATAGAATATACCAGATTTTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132648 218 -   9889416 TGTCTCTCACACATCTGGGGTTGAATAGCTGAATATATTGTTTAATTTCTACATCAATGATAGTTTAATAGGCATTCATGCAAATCAGTTCTGCTGGGAGTTTATTATCCTACTCCAATAACAAATAATGCATTC----CTTAAATTCAGTGTAGGTATAAATTCTACATGGTATGTGAA-GCTACCTTTGTGAATTGCTGCTATAGAGTATACCAGATTTTG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30883888 213 -  47401472 TGTCTCTCATACATAT-GGG-------GCTGAATATATTGTTTAATTTCTACAACAATGATATTTTAATAGCTATTCATGCAAATCAGTTCTGGTGAAAGCCTATTATCCTACTCCAATAAAAAGT-ATGCATTTCTTACTTAAATTTAGTGTAAGTATAAATTCCATATGGTATGCAAA-ACTATCTTTATGTATTGCTGATATAGAATATACCATATTGTG
i micMur3.chr31                I 29 C 0
s otoGar3.GL873528              20763119 213 +  38779656 TGTCTCTTGTACATAT-GGA-------GCTGAATATATTGTTTAATTTCTAAATCAATGATATTTTAACAGCTATTCATGCAAATCACTTCTGGTGAAAGTTTATTATCCTACTCCAGTAAGAAGT-ATGCATTCCTTACTTAAATTTAGTGTAAGTATAAATTCCATATGGTATGTGAA-GCTATCTTTATGTATCGCTGATATAGAACATACCAGATTGTG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22707644 184 -  98207768 -----------------GGTTTGACT---TGAATATATTGTTCAGTTTTTCCATCAATGAATTATTAACAGGT--------------CTTATAGTAGTGATCCGTTATTGTACTTCACTAGTAACTAGTGCATTC----ATTAAATTTGGTTTACTTATGAATTA-ATATGGTATCAGAATGTTATCTTAATGAATGGTTCTTATACCGTATCTCAGACTTTG
i mm10.chr16                   C 0 I 3784
s canFam3.chr31                 28795950 212 -  39895921 TATTCTTCACACATCT-GGG-------GCTGAATTTGTTGTTTAATTTCTACATCAA-GTTATTCCAACATG-ATTCACGCACATCAGTTCTAGTGTGAGTTTAGTATCTTCTTCCGATAACAAGGAATCTACTCCTTACTTAAACTCAATATAAATATAAATTCCTTATGATATGTAAA-GCTATCTTTTTGAATTACTACTATAGAATATATTTTATTGTG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694619 210 +   6883506 AATCTTTCACATGTCT-GGG-------ACTGAATACATTGTTTAATTAAGAGAGCAATGATA-TTTAACAGGCATTCATGCAAATAAACTCTGATGTGGG---ATTATTTTTCTCCAATAACAAGTAATACATTTCTTTCTTAACTATAGTATAAACATAAATTCCATATGGTATATAAA-TCTATCTTTTAAAATTACTCCTACAGGATATTCCAGAATGTG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    154223 947 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=308195.000000
s hg38.chr14_GL000009v2_random    187121 24 +    201709 TAGGTTTTAGTACAATCCAGGTAA
s panTro5.chr9                  41877196 24 + 116767853 TAGGTTTTAGTACAATCCAGGTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844691 24 + 205426864 TAGGTTTTAGTACAATCTAGGTAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4315 24 +  12760026 TAGGTTTTAGTACAATCTAGGTAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117216 24 -  86207423 TAGGTTTTAGTACAATCCAGGTAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272892 24 - 204787373 TAGGTTTTAGTACAATCCAGGTAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    172116 24 - 192460366 TAGGTTTTAGTACAATCCAGGTAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191588 24 -  11645122 TAGGTTTTAGTACAATCCAGGTAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176827 24 -   6739814 TAGGTTTTAGTACAATCCAGGTAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67445 24 - 101219884 TAGGTTTTAGTACAATCCAGGTAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          189006 24 -    785044 TAGGTTTTAGTACAATCCAGGTAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79261 24 -  10971483 TAGGTTTTAGTACAATCCAGGTAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933547 24 -  13128814 TAGGTTTTAGTACAATCCAAGTAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664504 24 +  14377064 TAGGTTTTAGTACAATCCAAGTAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132866 24 -   9889416 TAGGTTTTAGTACAATCCAAGTAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30884101 24 -  47401472 TGAGTTTTAGGACAGTCCAGGTAA
i micMur3.chr31                C 0 I 266
s otoGar3.GL873528              20763332 24 +  38779656 TGAGTTTTAGGACAGTCCAGGTAA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28796162 24 -  39895921 TGGGTTTTAGGATAGTCAATATAA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694829 24 +   6883506 TGTACTTGAGGCTCATCCTGGTAA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e nasLar1.chr2                    154223 947 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=2293899.000000
s hg38.chr14_GL000009v2_random    187145 225 +    201709 TTATCAAGCCTTTGTAATATTTTCAGGAAAGTGATCCTTTCACTTTAGTTTATGGAACTTGAAAATTTTTTAGTTGCCACCGACTAGTTAGATCATAAACTTAATTCTATGTAGCTGAATT-TATTTTTCTATTTATAAATTTATCTGGGTGCTTTCTCAAAAGTTTCTCAGATTAAAAACCTATGGCTTTGTAAAATT-AAAACAGA-AGTAA-----TAGGAATTGTGTTA
s panTro5.chr9                  41877220 225 + 116767853 TTATCAAGCCTTTGTAATATTTTCAGAAAAGTGATCCTTTCACTTCAGTTTATGGAACTTGGAAAGTTTTCAGTTGCCACCCACTTGTTAGATCATAAACCTAATTCTATGTATCTGAATT-TATTTTTCTATTTATAAATTTATCTGGATGTTTTCTCAAAGGTTGCTCAGATTAAAAACCTATGGCTTTGTAAAATT-AAAACAGA-AGTAA-----TAAGAATTGTGTTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844715 225 + 205426864 TTATCAAGCCTTTGTAATATTTTCAGGAAAGTGATCCTTTCACTTCAGTTTATGGAACTTGGAAATTTTTCAGTTGCCACCCACTAGTTAGATCATAAACTTAATTCTATATATCTGAATT-TATTTTTCTATTTATAAATTTATCTGGATGCTTTCTCAAAGGTTTCCCAGATTAAAAACCTATGGCTTTGTAAAATT-AAAAGAGA-AGTAA-----TAAGAATTGTGTTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4339 225 +  12760026 TTATCAAGCCTTTGTAATATTTTCAGGAAAGTGATCCTTTCACTTCAGTTTATGGAACTTGGAAATTTTTCAGTTGCCACCCACTAGTTAGATCATAAACTGAATTCTATATATCTGAATT-TATTTTTCTATTTATAAATTTATCTGGATGCTTTCTCAAAGGTTTCCCAGATTAAAAACCTATGGCTTTGTAAAATT-AAAAGAGA-AGTAA-----TAAGAATTGTGTTA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117240 217 -  86207423 TTATCAAGCC-TTGTAATATTTTCAGGAAAGTGATCCTTTCACTTCAGTTTATGGAACTTGGAAATTTTTCAGTTGCCACACACTAGTTA-ATCATAAACTGAATTCTATGTATCTGAATT-TATTTTTCTATTTATAAATGTGTCTGGATGCTTTCTCAAAGG------AGATTAAAAACCTATGACTTTGAAAAATT-AAAAGAGA-AGTAA-----TTAAAATTGTGTTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204272916 224 - 204787373 TTATCAAGCC-TTGTAACATTTTCAGGAAAGTGACCCTTTCACTTCAATTTGTGGGACTTGGAAATTTTTCAGTTGTCACCCACTAGTTAGATCATAAACTTAATTCTATGTATCTGAATT-TATTTTTCTATTTATAAATTTATCTGGATACTTTCTCAAAGGTTTCTCAGATTAAAAACCTATGGCTTTGTAAAAGT-AAAAGAGA-AGTAA-----TAAGAATCGTGTTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    172140 224 - 192460366 TTATCAAGCC-TTGTAACATTTTCAGGAAAGTGATCCTTTCACTTCAATTTGTGGGACTTGGAAATTTTTCAGTTGTCACCCACTAGTTAGATCATAAACTTAATTCTATGTATCTGAATT-TATTTTTCTATTTATAAATTTATCTGGATACTTTCTCAAAGGTTTCTCAGATTAAAAACCTATGGCTTTGTAAAAGT-AAAAGAGA-AGTAA-----TAAGAATCGTGTTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191612 224 -  11645122 TTATCAAGCC-TTGTAACATTTTCAGGAAAGTGATCCTTTCACTTCAATTTGTGGGACTTGGAAATTTTTCAGTTGTCACCCACTAGTTAGATCATAAACTTAATTCTATGTATCTGAATT-TATTTTTCTATTTATAAATTTATCTGGATACTTTCTCAAAGGTTTCTCAGATTAAAAACCTATGGCTTTGTAAAAGT-AAAAGAGA-AGTAA-----TAAGAATCGTGTTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          176851 223 -   6739814 TTATCAAGCC-TTGTAACATTTTCAGGAAAGTGATCCTTTCACTTCAATTTGTGGGACTTGGAAATTTTTCAGTTGTCACCCACTAGTTAGATCATAAACTTAA-TCTATGTATCTGAATT-TATTTTTCTATTTATAAATTTATCTGGATACTTTCTCAAAGGTTTCTCAGACTAAAAACCTATGGCTTTGTAAAAGT-AAAAGAGA-AGTAA-----TAAGAATCGTGTTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67469 224 - 101219884 TTATCAAGCC-TTGTAACATTTTCAGGAAAGTGATCCTTTCACTTCAATTTGTGGGACTTGGAAATTTTTCAGTTGTCACCCACTAGTTAGATCATAAACTTAATTCTATGTCTCTGAATT-TATTTTTCTATTTATAAATTTATCTGGATACTTTCTCAAAGGTTTCTCAGATTAAAAACCTATGGCTTTGTAAAAGT-AAAAGAGA-AGTAA-----TAAGAATCATGTTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          189030 223 -    785044 TTATCAAGCC-TTGTAACATTTTCAGGAAAGTGATCCTTTCACTTCAATTTGTGGGACTTGGAAATTTTGCAGTTGTCACCCACTAGTTAGATCATAAACTTAA-TCTATGTATCTGAATT-TATTTTTCTATTTATAAATTTATCTGGATACTTTCTCAAAGGTTTCTCAGACTAAAAACCTATGGCTTTGTAAAAGT-AAAAGAGA-AGTAA-----TAAGAATCGTGTTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79285 224 -  10971483 TTATCAAGCC-TTGTAACATTTTCAGGAAAGTGATCCTTTCACTTCAATTTATGGGATTTGGAAATTTTTCAGTTGTCACCCACTAGTTAGATTATAAACTTAATTCTATGTATCTGAATT-TATTTTTCTATTTATAAATTTATGTGGATGCTTTCTCAAAGGTTCCTCAGGTTAAAAACCTATGGCTTTGTAAAAGT-AAAAGAGA-AGTAA-----TAAGAATCATGTTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933571 224 -  13128814 TTATAAAGCC-TTGTAACATTTTCAGGAAAGTGATCCTTTCACTTCAGTTTATGAAACTTGGAAATTTTTCAGTTGCCACCCACAAGATAGATCataaatttaattctatgtatataaatg-tatttttctatttataaatttaCCTAAATGGTTTATCAAAGGTTTCCCAGACTAAAAACATATGGCTTCATAAAATT-AAAAGAGA-AGTGT-----TAAGAATTGTGTTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664528 224 +  14377064 TTATCAAGCC-TTGTAACATTTTTAAGAAAGTGATCCTTTCACTTCAGTTTATGGAACTTGGAAATTTTTCAGTTGCCACCCATTAGATAGATCATAAATTTAAGTCTATGTATATAAATT-TATTTTTCTATTTATAAATTTACCTAGATGCTTTATCAAAGGTTTCCCAGACTAAAAACATATGGCTTCATAAAATT-AAAAGAGA-AGTGT-----TAAGAATTGTGTTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4132890 222 -   9889416 TTATCAAGCC-TTGTAACATTTTCAGGAAAGTGATCCTTTCACTTCAGTTTATGGAACTTGGAAAATTTTCAGTTGCCACCCACTAGATAGATCAtaaatttaattctatgtatataaatt-tatttttctatttataAATTTACCTGGATGCTTTATCAAGG--TTTCCAGATT-AAAACATATGGCTTCATAAAATTAAAAAAAGA-AGTGA-----TAAGAATTGTGTTA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20763356 223 +  38779656 TTTTCAAGCA-CTGTAACATTTTCAGGGAAATTATCCTTTCCTTTCTGTTTGTAGGATTTG-AAACTTTTCACTTGCCATCTACTAGTTA-ATCACCAACTGAATTCTATATGTCTTAATT-TGTTCTTCTATATATAAAATTATCTGAATGCTTTATAAAAGCTCTGAGAGTTTAAAAACCTATGGCTTTGTGAAAAT-TTAAGTCa-a-taa---tttaaaaattatatta
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28796186 213 -  39895921 TTTTCAAGCG-TTTAAAAATTTTCAGGGAAGTATTCCTTTTGTTTTAGTTTATAGGACTTTAAAACTTGTAAGTTACCACCTACTAATTAAATTACTAACTTAA---TACATCCCGACATT-TATTTTTCTACTTATCAAATTATCTAGTTGTTTTCTCAAAGTTCTT-------------CTATGGCTTTTTGAGAAT-AAAAGAGA-AGTAATGATTTAAGAATTGTTTTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6694853 227 +   6883506 TATTCAAGCA-TTTCAAGATTTTCA-GAAAGTGTTCCTTCCACTTCATATTATGGGGTATTAAAACCTGTAAGTTGCCATTTGTTAGTTGTGTCACTCTCGTAATTCTATATGATTAAATTATTTTTTTCTCTTTATAAAATGACATGGATGATCTCTCAAAGTTCTTGCAGATTAAAAACATATAGCTTTGAGGAAAT-AAAAGACATACTAA---TTTAAGAATTGTTTTA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884125 266 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=106018.000000
s hg38.chr14_GL000009v2_random    187370 11 +    201709 AAAAACAGAAT
s panTro5.chr9                  41877445 11 + 116767853 AAAAACAGAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844940 11 + 205426864 AAAAACAGAAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4564 11 +  12760026 AAAAACAGAAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117457 11 -  86207423 AAAAACAGAAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273140 11 - 204787373 AAAAACAGGAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    172364 11 - 192460366 AAAAACAGGAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191836 11 -  11645122 AAAAACAGGAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          177074 11 -   6739814 AAAAACAGGAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67693 11 - 101219884 AAAAACAGGAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          189253 11 -    785044 AAAAACAGGGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79509 11 -  10971483 AAAAACAGGAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933795 11 -  13128814 AAAAACAGAAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664752 11 +  14377064 AAAAGCAGGAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4133112 10 -   9889416 AAAA-CAGAAT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20763579 11 +  38779656 taaaCCAGAAT
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6695080 11 +   6883506 CAAACCAGAAT
i dasNov3.JH568778             C 0 I 2
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884125 266 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28796399  0 -  39895921 C

a score=20955.000000
s hg38.chr14_GL000009v2_random    187381 2 +    201709 CA
s panTro5.chr9                  41877456 2 + 116767853 CA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844951 2 + 205426864 CA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4575 2 +  12760026 CA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117468 2 -  86207423 CA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273151 2 - 204787373 CA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    172375 2 - 192460366 CA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191847 2 -  11645122 CA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          177085 2 -   6739814 CA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67704 2 - 101219884 CA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          189264 2 -    785044 CA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79520 2 -  10971483 CA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933806 2 -  13128814 CA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664763 2 +  14377064 CA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4133122 2 -   9889416 CA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20763590 2 +  38779656 TA
i otoGar3.GL873528             C 0 I 161
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884125 266 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28796399 0 -  39895921 C
e dasNov3.JH568778               6695091 2 +   6883506 I

a score=2332228.000000
s hg38.chr14_GL000009v2_random    187383 308 +    201709 ggccaagcctggtggcttatgcctctaatgccaacacttagggaggccaaggcgggaggatcatttgaggtcaggagttcaagaccagcctggacaacatggcaaaactccacatgtattaaaaaa---atacacaaattagctggg---cgtggtggtgaatgcctttagtcctagctactcaggaggctaaggcaggagaatagcttgaacctgggaggctgaggttgcagtgagccaagatagagccactacattccagcctgggtgacagagtgagatcctgtc-ttaaaaaaaaggaaaaaa---------------------gaaaaaga
s panTro5.chr9                  41877458 312 + 116767853 ggccaagcatggtggcttatgcctgtaatgccaacacgtagggaggccgaggtgggaggatcatttgaggtcaggagttcaagaccagcctgggcaacatggcaaaaccccacctgtattaaaaaa----tacacaaattagctgg----tgtggtggtgaatgcctttattcctagctactcaggaggctaaggcaggagaatagcttgaacccgggaggctgaggttgcagtgagccaagatagagccactgcattccagcctgggtgacagagtgagatcctgtc-ttaaaaaaaaagaaaaaaag---------------aaaagaaaaaGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77844953 316 + 205426864 ggccaagcatggtggcttatgcctgtaatgccagcacttagggaggccgaggcagaaggatcatttgaggtcaggagttcgagaccagcctggccaacatggcaaaaccccacctgtaataaaaaa-aaatatacaaattagcgggg---cgtggtggtgaatgcctttagtcctagctactcaggaggctaaggcaggagaattgcttgaacccgggaggctgaggttgcagtgagccaagatagtgccactgcactccagcctgggtgacagagtgagatcctgtc-tttaaaaaaaaagaaaaaag---------------aaaaggaaaaGA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4577 318 +  12760026 ggccaagcatggtggcttatgtctgtaatgccagcacttagggaggccgaggcagaaggatcatttgaggtcaggagttcgagaccagcctggccaacatggcaaaaccccacctgtaataaaaaaaaaatacacaaattagctggg---cgtggtggtgaatgcctttagtcctagctactcaggaggctaaggcaggagaatcgcttgaacccgggaggctgaggttgcagtgagccaagatagtgccactgcactccagtctgggtgacagagtgagatcctgtctttaaaaaaaaaagaaaaaag---------------aaaaggaaaaGA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117470 304 -  86207423 ggccaagcatggtggcttatgcctgtaatgccagcactttgggaggctgaggcgggaggatcatttgaggtcaggagttcgagaccagcctggccaacatggcaaaaccccacctgtaataaaaaa---atacacaaattagctggg---tgtggtggtgaatgcctttagtcccagctactcaggaggctaaggcaggagaatcgctcgaacccaggaggcagaggttgcagtgagccaagatagtgccactgcactccagcctgggtgacacagtgagatcctgtc-ttaaaaaaagaaaa-------------------------gaaagaaa
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273153 327 - 204787373 ggccaagcatggtggcttatgcctgtaatgccagcactttgggaggccgaggcgggaggatcatttgaggtcaggagttcgagaccagcctggccaacatggcaaaaacccacctctaatttaaaa--aatacacaaattagctggg---cgtggtggtgaatgcctttagtcccagctactcagaaggctaaggcaggagaattacttgaacccgggaggctgaggttgcagtgagccaagacagtgccactgcactctggcctgggtgacggagtgagatcctgtc-tcaaaaaaaacaaaaaaaaaaaaaaaaaaa---agaaaagaaaaTGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    172377 330 - 192460366 ggccaagcatggtggcttatgcctgtaatgccagcactttgggaggccgaggcgggaggatcatttgaggtcaggagttcgagaccagcctggccaacatggcaaaaccccacctctaatttaaaa--aatacacaaattagctggg---catggtggtgaatgcctttagtcccagctactcagaaggctaaggcaggagaattacttgaacctgggaggctgaggttgcagtgagccaagacagtgccactgcactctggcctgggtgacggagtgagatcctgtc-tcaaaaaaaacaaaaaacaacaacaacaaaaaAAGAAAAGAAAACGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          191849 325 -  11645122 ggccaagcatggtggcttatgcctgtaatgccagcactttgggaggccgaggcgggaggatcattcgaggtcaggagttcgagaccagcctggccaacatggcaaaaccccacctctaatttaaaa--aatacacaaattagctggg---cgtggtggtgaatgcctttagtcccagctactcagaaggctaaggcaggagaattacttgaacctgggaggctgaggttgcagtgagccaagacagcgccactgcactctggcctgggtgacggagtgagatcctgtc-tcaaaaaaaacaaaaaaaatcaacaacaaa-----aaaaGAAAACGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          177087 323 -   6739814 ggccaagcatggtggcttatgcctgtaatgccagcactttgggaggccgaggcgggaggatcatttgaggtcaggagttcgagaccagcctggtcaacatggcaaaaccccacctctaattttaaa--aataca-aaattagctggg---cgtggtgatgaatgcctctagtcccagctactcagaaggctaaggcaggagaatcacttgaacccgggaggctgaggttgcagtgagccaagacagcgccactgcactctggcctgggtgacggagtgagatcctgtc-tcaaaaaaaa-aaaaaacaaaaaaaaaaga-----aaaGAAAAACGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    67706 314 - 101219884 ggccaagcatggtggtttatgcctgtaatgccagcaatttgggaggctgaggcgggaggatcatttgaggtcaggagtttgagaccagcctggccaacatggcaaaaccccacctctaatttaaaa--aatacacaaattagctggg---cgtggtggtgaatgcctctagtcccagctactcagaaggctaaggcagaagaatcacttgaacccgggaggctgaggttgcagtgagccgagattgtgccactgcactccag-ctgggcaaaagagtgagactctgtc-tcaaagaaa--aaaaaaaaaaaaaaa-------------gaaaaTGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          189266 322 -    785044 ggccaagcatggtggcttatgcctgtaatgccagcactttgggaggccgaggggggaggatcatttgaggtcaggagttcgagaccagcctggccaacatggcaaaaccccacctctaattttaaa--aataca-aaattagctggg---cgtggtggtgaatgcctttagtcccagctactcagaaggctaaggcaggagaatcacttgaacccgggaggctgaggttgcagtgagccaagacagcgccactgcactctggcctgggtgacggagtgagatcctgtc-tcaaaaaaa--aaaaaacaaaaaaaaaaga-----aaaGAAAAACGA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79522 324 -  10971483 ggccaagcatggtggcttatgcctgtaatgccagcaatttgggaggccgtggcgggaggagcatttgaggtcaggagttcgagaccagcctggccaac-tggcaaaaccccacctgtaattttaaa--aatacacaaattagctggg---tgtggtggtgaatgcctctagttccagctactcagaaggctaaggcaggagaatcacttgaacctgggaggctgaggttgcagtgagccaagatagtgccactgcactccagcctgggtgatggagtgagatcctgtc-tcaaaaaaaaaaaaaagaaagaaagaaaag-----aaAAGAAAAAGA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10933808 307 -  13128814 ggccaggtgtggtggctcatgcctataatgccagcactttgggaggtcatagcaggcagctcatttgaggtc---agttcaagaccagcctgctcaacatggcaaaactccacctctactgaaata----tacacaaattagcttggagtggtggtggtgaatgctttt-gttccaggtactcaggaggctaaggcaggaggctctcttgaacctgggaggcagaggtagcggtgagccaagatggtgccacagcactccagcctgggtgacagagtgaga-cctgtc-tcaa--------------aaaaaaaaaaaa-----aaaaaaaaaaaa
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7664765 315 +  14377064 ggccaggtgtggtggctcatgcctataataccagcactttgggatgccaaagcaggcagctcgtttgaggtcaggagttcaagaccagcctgctcaacatggcagaactacatttctactgaaaaa----tacacaaattagctgggagtggtggtggtgaatgctttt-gttccaggtactcaggaggctaaggcaggagaccctcttgaacctgggaggcagaggtagcagtgagccaagatgatgccacagcactccagcctgggtgacagagtgaga-cctgtc-tcaa---------taaataaataaataaat-----agaaagaaaGAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4133124 323 -   9889416 ggccaggtatggtggctcatgcctgtaatgccagcactttgggagg-caaagcaggcagctcatttgaggtcaggagttcaagcacagcctgctcaatatggcaaaactccatctctactgaaaaa----tacacagattagctgggagtggtggtggtgaatgctttt-gttccgggtactcaggaggctaaggcaggagactctcttgaacctgggaggcagaggtagcagtgagccaagatggtgccacagcactccagcctgggtgacagagtgaga-cctgtc-tcaaaaaaaaaaaaaaaaaaaaaaaaagaa-----agaaagaaagaa
i aotNan1.NW_018487195v1       C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884125 266 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28796399   0 -  39895921 C
e otoGar3.GL873528              20763592 161 +  38779656 I
e dasNov3.JH568778               6695091   2 +   6883506 I

a score=153986.000000
s hg38.chr14_GL000009v2_random    187691 13 +    201709 aaaaa---CAGAATCA
s panTro5.chr9                  41877770 16 + 116767853 AAGAAAACCAGAATCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845269 16 + 205426864 AAGAAAACCAGAATCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4895 16 +  12760026 AAGAAAACCAGAATCA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117774 16 -  86207423 aagaaaaCCAGAATCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273480 16 - 204787373 AAGAAAACCAGAATCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    172707 16 - 192460366 AAGAAAACCAGAATCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192174 16 -  11645122 AAGAAAACCAGAATCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          177410 16 -   6739814 AAGAAAACCAGAATCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68020 16 - 101219884 AAGAAAACCAGAATCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          189588 16 -    785044 AAGAAAACCAGAATCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79846 16 -  10971483 AAGAAAACCAGAATCA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934115 16 -  13128814 aagaaaaCCAGAATCA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7665080 16 +  14377064 AAGAAAACCAGAATCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4133447 16 -   9889416 aagaaaaCCAGAATCA
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28796399 13 -  39895921 ---AAAACCAAAATTT
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884125 266 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e otoGar3.GL873528              20763592 161 +  38779656 I
e dasNov3.JH568778               6695091  2 +   6883506 I

a score=269414.000000
s hg38.chr14_GL000009v2_random    187704 32 +    201709 TACAATGAGAGAGATTGTATAGCCCTTT----------TAAT
s panTro5.chr9                  41877786 32 + 116767853 TACTATGAGAGAGATTGTATAGCCCTTT----------TAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845285 32 + 205426864 CACAATGAGAGAGGTTGTATAGCCCTTT----------TAAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4911 32 +  12760026 CACAATGAGAGAGGTTGTATAGCCCTTT----------TAAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117790 32 -  86207423 TACAATGAGAGAGGTTGTATAGCCCTTT----------TAAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273496 32 - 204787373 AACAATGAGAGAGGTTGTGTAGCCCTTT----------TAAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    172723 32 - 192460366 AACAATGAGAGAGGTTGTGTAGCCCTTT----------TAAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192190 32 -  11645122 AACAATGAGAGAGGTTGTGTAGCCCTTT----------TAAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          177426 32 -   6739814 AACAATGAGAGAGGTTGTGTAGCCCTTT----------TAAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68036 32 - 101219884 AACAATGAGAGAGGTTGTGTAGTCCTTT----------TAAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          189604 32 -    785044 AACAATGAGAGAGGTTGTGTAGCCCTTT----------TAAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79862 32 -  10971483 AACAATGAGAGAGGCTGTGTAGCCCTTT----------TAAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934131 42 -  13128814 TACAATGAGAGAGGTTGTATATTCCTTTCAGGTGTCCATAAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7665096 42 +  14377064 TACAATGAGAGAGGTTGTATATTGCTTTCAGGTGTCCATAAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4133463 42 -   9889416 TACAGTGAGAGAGGTTGTATATTCCTTTCAGGTGTCCATAAT
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28796412 30 -  39895921 TATAAT--AAGAAGTTATATATTCTTTT----------CAGG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6695093 32 +   6883506 TACAGTGAGAAAATTTATAGATTCTTAT----------CAAG
i dasNov3.JH568778             I 2 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884125 266 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e eulFla1.LGHW01000695v1           89821 923 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e otoGar3.GL873528              20763592 161 +  38779656 I

a score=136008.000000
s hg38.chr14_GL000009v2_random    187736 11 +    201709 TGTCCATAAAG
s panTro5.chr9                  41877818 11 + 116767853 TGTCCATAATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845317 11 + 205426864 TGTCCATAATG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4943 11 +  12760026 TGTCCATAATG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117822 11 -  86207423 TGTCCATAATG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273528 11 - 204787373 TGTCCATAATG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    172755 11 - 192460366 TGTCCATAATG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192222 11 -  11645122 TGTCCATAATG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          177458 11 -   6739814 TGTCCATAATG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68068 11 - 101219884 TGTCCATAATG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          189636 11 -    785044 TGTCCATAATG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79894 11 -  10971483 TGTCCATAATG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934173 11 -  13128814 AGTCCATAATG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7665138 11 +  14377064 AGTCCACAATG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4133505 11 -   9889416 AGTCCATAATG
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           90744 11 +   1229009 TGTCCACAATG
i eulFla1.LGHW01000695v1       I 923 C 0
s canFam3.chr31                 28796442 11 -  39895921 TGTCCAGAATG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6695125 11 +   6883506 TGTTCATAATG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884125 266 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e otoGar3.GL873528              20763592 161 +  38779656 I

a score=444869.000000
s hg38.chr14_GL000009v2_random    187747 34 +    201709 GATACATTTCTTTTTCTGTGTAATAGTTTATCAG
s panTro5.chr9                  41877829 34 + 116767853 GATACATTTCTTTTTCTGTGTAATAGTTTATCAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845328 34 + 205426864 TATACATTTCTTTTTCTGTGTAATAGTTTATCAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4954 34 +  12760026 TATACATTTCTTTTTCTGTGTAATAGTTTATCAG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117833 34 -  86207423 GATACATTTCTTTTTCTGTGTAGTAGTTTATCAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273539 34 - 204787373 GATCCATTTCTTTTTCTATGTAATAGTTTATCAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    172766 34 - 192460366 GATCCATTTCTTTTTCTATGTAATAGTTTATCAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192233 34 -  11645122 GATCCATTTCTTTTTCTATATAATAGTTCATCAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          177469 34 -   6739814 GATCTATTTCTTTTTCTATGTAATAGTTTATCAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68079 34 - 101219884 GATCCATTTCTTTTTCTATGTAATAGTTTATCAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          189647 34 -    785044 GATCCATTTCTTTTTCTATGTAATAGTTTATCAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79905 34 -  10971483 GATCCATTTCTTTTTCTGTGTAATAGTTTATCAG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934184 34 -  13128814 GATACATTTCTTTTTCTATGTAATAGTTTATCAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7665149 34 +  14377064 GATACATTTCTTTTTCTATGTAATAGTTTATCAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4133516 34 -   9889416 AATACATTTCTTTTTCTATGTAATAGTTTATCAG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30884391 34 -  47401472 GATATATTTCTTTTTCTGTGTATTAATTTATCAG
i micMur3.chr31                I 266 I 285
s eulFla1.LGHW01000695v1           90755 34 +   1229009 GATACATTTCTTTTTCTGTGTATTAATTTGTCAG
i eulFla1.LGHW01000695v1       C 0 I 880
s canFam3.chr31                 28796453 34 -  39895921 GACACACTTCTTTTTCTGTGTAATAGTTTGTCAT
i canFam3.chr31                C 0 I 4
s dasNov3.JH568778               6695136 32 +   6883506 AATATATCTCTTTTTC--TGTTATAGTCCATCAG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e nasLar1.chr2                    154223 947 + 181502896 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e otoGar3.GL873528              20763592 161 +  38779656 I

a score=15713.000000
s hg38.chr14_GL000009v2_random    187781 8 +    201709 -CATGAAAA--
s panTro5.chr9                  41877863 8 + 116767853 -CATGAAAA--
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845362 8 + 205426864 -CATGAAAA--
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4988 8 +  12760026 -CATGAAAA--
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117867 5 -  86207423 -CATGA-----
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273573 5 - 204787373 -CATGG-----
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    172800 5 - 192460366 -CATGG-----
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192267 5 -  11645122 -CATGG-----
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          177503 5 -   6739814 -CATGA-----
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68113 5 - 101219884 -CATGA-----
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          189681 5 -    785044 -CATGA-----
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79939 5 -  10971483 -CATGA-----
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934218 5 -  13128814 -CATGA-----
i saiBol1.JH378168             C 0 I 5
s cebCap1.NW_016107322v1         7665183 5 +  14377064 -CATGA-----
i cebCap1.NW_016107322v1       C 0 I 4
s aotNan1.NW_018487195v1         4133550 5 -   9889416 -CAGGA-----
i aotNan1.NW_018487195v1       C 0 I 15
s canFam3.chr31                 28796491 5 -  39895921 -AATAG-----
i canFam3.chr31                I 4 C 0
s dasNov3.JH568778               6695168 8 +   6883506 CCATAA---AA
i dasNov3.JH568778             C 0 I 17
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884425 285 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e otoGar3.GL873528              20763592 161 +  38779656 I

a score=-256.000000
s hg38.chr14_GL000009v2_random    187789 4 +    201709 TTTT---
s panTro5.chr9                  41877871 4 + 116767853 TTTT---
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845370 4 + 205426864 TTTT---
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            4996 4 +  12760026 TTTT---
i gorGor5.CYUI01015020v1       C 0 C 0
s canFam3.chr31                 28796496 3 -  39895921 ----TTT
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884425 285 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e rheMac8.chr2                 204273578 0 - 204787373 C
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555 15 -   9889416 I
e otoGar3.GL873528              20763592 161 +  38779656 I
e colAng1.NW_012123820v1           79944 0 -  10971483 C
e dasNov3.JH568778               6695176 17 +   6883506 I
e cebCap1.NW_016107322v1         7665188 4 +  14377064 I
e saiBol1.JH378168              10934223 5 -  13128814 I
e manLeu1.NW_012099043v1          189686 0 -    785044 C
e chlSab2.chr22                    68118 0 - 101219884 C
e cerAty1.NW_012001605v1          177508 0 -   6739814 C
e macNem1.NW_012010856v1          192272 0 -  11645122 C
e macFas5.chr2                    172805 0 - 192460366 C
e nomLeu3.chr21                 42117872 0 -  86207423 C

a score=1505.000000
s hg38.chr14_GL000009v2_random    187793 3 +    201709 CTT-
s panTro5.chr9                  41877875 3 + 116767853 CTT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845374 3 + 205426864 CTT-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5000 3 +  12760026 CTT-
i gorGor5.CYUI01015020v1       C 0 C 0
s saiBol1.JH378168              10934228 3 -  13128814 TTT-
i saiBol1.JH378168             I 5 C 0
s cebCap1.NW_016107322v1         7665192 3 +  14377064 TTT-
i cebCap1.NW_016107322v1       I 4 C 0
s canFam3.chr31                 28796499 3 -  39895921 -TTC
i canFam3.chr31                C 0 I 5
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884425 285 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e rheMac8.chr2                 204273578 0 - 204787373 C
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555 15 -   9889416 I
e otoGar3.GL873528              20763592 161 +  38779656 I
e colAng1.NW_012123820v1           79944 0 -  10971483 C
e dasNov3.JH568778               6695176 17 +   6883506 I
e manLeu1.NW_012099043v1          189686 0 -    785044 C
e chlSab2.chr22                    68118 0 - 101219884 C
e cerAty1.NW_012001605v1          177508 0 -   6739814 C
e macNem1.NW_012010856v1          192272 0 -  11645122 C
e macFas5.chr2                    172805 0 - 192460366 C
e nomLeu3.chr21                 42117872 0 -  86207423 C

a score=229214.000000
s hg38.chr14_GL000009v2_random    187796 66 +    201709 TTTCTGTGTAATAGTTTATCAGCATGAAAAAAAA-GAGTCACTGAACACTGATAATTTtctttctct
s panTro5.chr9                  41877878 64 + 116767853 TTCCTGTGTAATAGTTTATCAGCATGAAAAAAAAAGAGTCACTGAACACTGATAATTTTTTtt---t
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845377 62 + 205426864 TTTCTGTGTAATAGTTTATCAGCATGAAAAAAAA-GAGTCACTGAACACTGATAATTTTCttt----
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5003 62 +  12760026 TTTCTGTGTAATAGTTTATCAGCATGAAAAAAAA-GAGTCACTGAACACTGATAATTTTCttt----
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117872 37 -  86207423 --------------------------AAAAAAAA-AAGTCACTGAACACTGATAATTTTCTTC---T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273578 37 - 204787373 -----------------------------AAAAA-GAGTCACTGAACACTGATAATTTTCTTTCTGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    172805 37 - 192460366 -----------------------------AAAAA-GAGTCACTGAACACTGATAATTTTCTTTCTCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192272 37 -  11645122 -----------------------------AAAAA-GAGTCACTGAACACTGATAATTTTCTTTCTCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          177508 37 -   6739814 -----------------------------AAAAA-GAGTGACTAAACACTGATAATTTTCTTTCTCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68118 37 - 101219884 -----------------------------AAAAA-GAGTCACTGAACACTGATAATTTTCtttctct
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          189686 37 -    785044 -----------------------------AAAAA-GAGTGACTGAACACTGATAATTTTCTTTCTCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           79944 37 -  10971483 -----------------------------AAAAA-GAGTCACTGAACACTGATAATTTTCTTTCTCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934231 61 -  13128814 TTTGTGTGTAATAGTTTATCATTA-----TGAAA-AAGACACTGAACACTGATAATTTTCTTTCTCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7665195 61 +  14377064 TTTGTGTGTAATAGTTTATCATTA-----TGAAA-AAGTCACTGAACACTGATAATtttctttctct
i cebCap1.NW_016107322v1       C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884425 285 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555 15 -   9889416 I
e canFam3.chr31                 28796502  5 -  39895921 I
e otoGar3.GL873528              20763592 161 +  38779656 I
e dasNov3.JH568778               6695176 17 +   6883506 I

a score=1910.000000
s hg38.chr14_GL000009v2_random    187862 2 +    201709 ct
s panTro5.chr9                  41877942 2 + 116767853 ct
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42117909 2 -  86207423 CT
i nomLeu3.chr21                C 0 C 0
s saiBol1.JH378168              10934292 2 -  13128814 Ct
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7665256 2 +  14377064 ct
i cebCap1.NW_016107322v1       C 0 I 577
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884425 285 -  47401472 I
e nasLar1.chr2                    154223 947 + 181502896 I
e rheMac8.chr2                 204273615 0 - 204787373 C
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555 15 -   9889416 I
e canFam3.chr31                 28796502 5 -  39895921 I
e otoGar3.GL873528              20763592 161 +  38779656 I
e colAng1.NW_012123820v1           79981 0 -  10971483 C
e dasNov3.JH568778               6695176 17 +   6883506 I
e manLeu1.NW_012099043v1          189723 0 -    785044 C
e chlSab2.chr22                    68155 0 - 101219884 C
e cerAty1.NW_012001605v1          177545 0 -   6739814 C
e macNem1.NW_012010856v1          192309 0 -  11645122 C
e macFas5.chr2                    172842 0 - 192460366 C
e panPan2.chr3                  77845439 0 + 205426864 C
e gorGor5.CYUI01015020v1            5065 0 +  12760026 C

a score=20488.000000
s hg38.chr14_GL000009v2_random    187864  3 +    201709 -----------ctc
s panTro5.chr9                  41877944  3 + 116767853 -----------ctc
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845439  3 + 205426864 -----------ctc
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5065  3 +  12760026 -----------ctc
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117911  3 -  86207423 -----------CTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273615  3 - 204787373 -----------CTC
i rheMac8.chr2                 C 0 I 2
s macFas5.chr2                    172842  3 - 192460366 -----------CTC
i macFas5.chr2                 C 0 I 2
s macNem1.NW_012010856v1          192309  3 -  11645122 -----------CTC
i macNem1.NW_012010856v1       C 0 I 2
s cerAty1.NW_012001605v1          177545  3 -   6739814 -----------CTC
i cerAty1.NW_012001605v1       C 0 I 1
s chlSab2.chr22                    68155  3 - 101219884 -----------ctc
i chlSab2.chr22                C 0 I 1
s manLeu1.NW_012099043v1          189723  3 -    785044 -----------CTC
i manLeu1.NW_012099043v1       C 0 I 1
s nasLar1.chr2                    155170  3 + 181502896 -----------CTC
i nasLar1.chr2                 I 947 I 564
s colAng1.NW_012123820v1           79981  3 -  10971483 -----------CTC
i colAng1.NW_012123820v1       C 0 I 2
s saiBol1.JH378168              10934294 14 -  13128814 tttctttctttttc
i saiBol1.JH378168             C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884425 285 -  47401472 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555 15 -   9889416 I
e canFam3.chr31                 28796502  5 -  39895921 I
e otoGar3.GL873528              20763592 161 +  38779656 I
e dasNov3.JH568778               6695176 17 +   6883506 I
e cebCap1.NW_016107322v1         7665258 577 +  14377064 I

a score=1257887.000000
s hg38.chr14_GL000009v2_random    187867 209 +    201709 tct-ctctttttt-tcctttttttggagat-gaagtctcactctgttgcccaggctggagtgcaatggcaacatctctgttcactgcaaacttcacatcctaggttcaggagattttcctgcctcagcctcccaagtagctgggattccaggtggaccccgtcatgcctggataaatttttgtattttcagtagagacggggtttcatcatg
s panTro5.chr9                  41877947 209 + 116767853 tct-ctctttttt--cctttttttggagattgaagtctcactctgttgcccaggatggagtgcaatggcaacatctctgttcactgcaaccttcacatcttgggttcaggcgattttcctgcctcagcctcccaagtagctgggattccaggtgcatcccgccatgcctggataagttttcgtattttcagtagagaaggggtttcatcatg
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845442 209 + 205426864 tct-ctttttttt-tccttttgttggagat-gaagtctcgctctgttgcccaggctggagtgcaatggcaacatctctgttcactgtaaccttcacatcctgggttcaggcgattctcctgcctcagcctcccaagtagctgggattacaggtgcatcccaccatgcctggataagtttttctattttcagtagagatggggtttcatcatg
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5068 210 +  12760026 tct-cttttttttttcctttttttggagat-gaagtctcgctctgttgcccaggctggagtgcaatggcaacatttctgttcactgtaaccttcacatcctgggttcaggcgattctcctgcctcagcctcccaagtagctgggattacaggtgcatcccaccatgcctggataagtttttgtattttcagtagagacggggtttcatcatg
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42117914 208 -  86207423 TCt-ttatttttc--ctttttttttgagat-gaagccttgctctgttgcccaggctggagtgcaatggcaacatctctgttcactgcaaccttcacatcctgggttcaggcgattctcctgcctcagcctcccaggtagctggggttacaggtgcatcccaccatgcctggataagtttttgtattttcagtagagatggggtttcatcgtg
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273620 208 - 204787373 --TCttttttttt-tccttttttttgagat-gaagtctcgctctgttgcccaggctggagtgcaagggcaacatctctgttcactgcaacctccacatcctgggttcaggtgattctcctgcctcagcctccccagtggcagggattacaggtgtatcccaccatgcctggataagtttttgtatttttagtagagatggggtttcatcatg
i rheMac8.chr2                 I 2 C 0
s macFas5.chr2                    172847 206 - 192460366 ----ttttttttt-tccttttttttgagat-gaagtctcgctctgttgcccaggctggagtgcaagggcaacatctctgttcactgcaacctccacatcctgggttcaggtgattctcctgcctcagcctccccagtggcagggattacaggtgtatcccaccatgcctggataagtttttgtatttttagtagagatgtggtttcatcatg
i macFas5.chr2                 I 2 C 0
s macNem1.NW_012010856v1          192314 207 -  11645122 --t-ttttttttt-tccttttttttgagat-gaagtctcgctctgttgcccaggctggagtgcaagggcaacatctctgttcactgcaacctccacatcctgggttcaggtgattctcctgcctcagcctccccagtggcagggattacaggtgtatcccaccatgcctggataagtttttgtatttttagtagagatgtggtttcatcatg
i macNem1.NW_012010856v1       I 2 C 0
s cerAty1.NW_012001605v1          177549 206 -   6739814 ----Ctttttttt-tccttttttttgagat-gaagtctcgctctgttgcccaggctggagtgcaagggcaacatctctgttcactgcaacctccacatcctgggttcaggtgattctcctgcctcagcctccccagtggtggggattacaggtgtatctcaccatgcctggatcagtttttgtatttttagtagagatggggtttcatcatg
i cerAty1.NW_012001605v1       I 1 C 0
s chlSab2.chr22                    68159 205 - 101219884 ----ctttttttt--ccttttttttgagat-gaagtctcgctctgttgcccaggctggagtgcaagggcaacatctgtgttcactgcaacctccatatcctgggttcaggtgattctcctgcctcagcctccccagtggcagggattacaggtgtatcccaccatgcctggataagtttttgtatttttagtagagatggggtctcatcatg
i chlSab2.chr22                I 1 C 0
s manLeu1.NW_012099043v1          189727 206 -    785044 ----Ctttttttt-cccttttttttgagat-gaagtctcgctctgttgcccgggctggagtgcaagggcaacatctctgttcactgcaacctccacatcctgggttcaggtgattctcctgcctcagcctccccagtggcagggattacaggtgtatcctaccatgcctggataagtttttgtatttttagtagagatggggtctcatcatg
i manLeu1.NW_012099043v1       I 1 C 0
s colAng1.NW_012123820v1           79986 208 -  10971483 -Ct-ttttctttt-cctttttttttgagat-gaagtctcactctgttgcccaggctggagtgcaagggcaacatctctgttcactgcaacctccacatcctgggttcaggtgattctcctgcctcagcctccccagtggcggggattacaggtgcatcccaccatgcctggataagtttttgtagttttagtagagatggggtttcatcatg
i colAng1.NW_012123820v1       I 2 C 0
s saiBol1.JH378168              10934308 200 -  13128814 -tt-tctttttct-ttctattttttggtac-gatgtctagctctgtcacctagggtagagtgcagtggcgccatctctgctcactgaaacctctgcctcctgcat--------ttctcctgcctcagcctcctgactagctgggattataggcacctgccaccatgcctggctaattttttgtatttttagtagagatggggtttcaccatg
i saiBol1.JH378168             C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884425 285 -  47401472 I
e nasLar1.chr2                    155173 564 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555  15 -   9889416 I
e canFam3.chr31                 28796502   5 -  39895921 I
e otoGar3.GL873528              20763592 161 +  38779656 I
e dasNov3.JH568778               6695176  17 +   6883506 I
e cebCap1.NW_016107322v1         7665258 577 +  14377064 I

a score=429664.000000
s hg38.chr14_GL000009v2_random    188076 67 +    201709 ttggcca-ggctggtctcaaactcctgacctcaaat-----gatctgcccgccttagcctcccaaattac-tgg
s panTro5.chr9                  41878156 67 + 116767853 ttggcca-ggctggtctcaaactcctgacctcaaat-----gatctgcccgccttagcctcccaaattgc-tgg
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845651 67 + 205426864 ttggcca-ggctggtctcaaactcccgacctcaaat-----gatctgcccgccttagcctcccaaagtgc-tgg
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5278 68 +  12760026 ttggcca-ggctggtctcaaactcccgacctcaaat-----gatctgcccgccttagcctcccaaagtgcttgg
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118122 67 -  86207423 ttggcca-ggctggtctcaaactcctgacctccaat-----gatctgcccgtcgtagcctcccaaagtgc-tgg
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273828 67 - 204787373 ttggcca-ggctgatctcgatctcctgagctcaaat-----gatctgcccgcctcagcctcccaaagtgt-tgg
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173053 67 - 192460366 ttggcca-ggctgatcttgatctcctgagctcaaat-----gatctgcccgcctcagcctcccaaagtgt-tgg
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192521 67 -  11645122 ttggcca-ggctgatcttgatctcctgagctcaaat-----gatctgcccgcctcagcctcccaaagtga-tgg
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          177755 67 -   6739814 ttggcca-ggctgatcttgatctcctgagctcaaat-----gatctgcccgcctcagcctcccaaagtgt-tgg
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68364 67 - 101219884 ttggcca-ggctgatctcgatctcctgagctcaaat-----gatctgcctgcctcagcctcccaaagtgt-tgg
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          189933 67 -    785044 ttggcca-ggctgatcttgatctcctgagctcaaat-----gatctgcccgcctcagcctcccaaagtgt-tgg
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80194 67 -  10971483 ttggcca-ggctgatctcgatctcctgagctcaaat-----gatctgcccgcctcagcctcccaaagtgt-tgg
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934508 67 -  13128814 ttggcca-ggttggtctcagactcctgacctcaaat-----gatctgcccgccttgtcctcccaaagtgc-tgg
i saiBol1.JH378168             C 0 C 0
s otoGar3.GL873528              20763753 72 +  38779656 ttggccagggctgggtttgaaccttccacctctgacatatggggctggc-gccctacacctttgagccac-agg
i otoGar3.GL873528             I 161 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884425 285 -  47401472 I
e nasLar1.chr2                    155173 564 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555 15 -   9889416 I
e canFam3.chr31                 28796502  5 -  39895921 I
e dasNov3.JH568778               6695176 17 +   6883506 I
e cebCap1.NW_016107322v1         7665258 577 +  14377064 I

a score=21617.000000
s hg38.chr14_GL000009v2_random    188143 3 +    201709 TGA
s panTro5.chr9                  41878223 3 + 116767853 TGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845718 3 + 205426864 TAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5346 3 +  12760026 TAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118189 3 -  86207423 TGA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273895 3 - 204787373 TGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173120 3 - 192460366 TGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192588 3 -  11645122 TGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          177822 3 -   6739814 TGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68431 3 - 101219884 TGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190000 3 -    785044 TGA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80261 3 -  10971483 TGA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934575 3 -  13128814 TGA
i saiBol1.JH378168             C 0 C 0
s otoGar3.GL873528              20763825 3 +  38779656 cgc
i otoGar3.GL873528             C 0 C 0
s dasNov3.JH568778               6695193 3 +   6883506 TGA
i dasNov3.JH568778             I 17 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884425 285 -  47401472 I
e nasLar1.chr2                    155173 564 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555 15 -   9889416 I
e canFam3.chr31                 28796502 5 -  39895921 I
e cebCap1.NW_016107322v1         7665258 577 +  14377064 I

a score=2222392.000000
s hg38.chr14_GL000009v2_random    188146 277 +    201709 TGATTTTCATTTAATGGTGTTCTACAAAGTGAGTTTAGGCAGTGAAAGGGCACA---AG---TCACCTATAGTTTACCGGAAAGT----AGTACCAGTC-------------------------ACCAGCGTTGAA----------------------------------------------------------------------------GCATACTCCTAACCCTGGAAAATTTCTTCAGCAGCCAGAATTAATCTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGT--ATGTGTTCATTCAGATTAGTAAATCTCCATGGTGTTCGAACTGTATAATATCAA-ATCTAAAATAAGTCAAGAGAGTTGGACAA-TATCTCATCTCT
s panTro5.chr9                  41878226 277 + 116767853 TGATTTTCATTTAATGGTTTTCTACAAAGTGAGTTTAGGCAATGAAAGCGCACA---TG---TCATCTATAGTTTACCAGAAAGT----AGTACCGGTC-------------------------ACCAGCATTGAA----------------------------------------------------------------------------GCATACTCCTAACACTGGAAAATTTCTTCAGCAGCCAGAATTAATCTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGT--ATGTGTTCATTCAGATTAGTAAATCTCCATGGTGTTCGAACTGTATAATATCAA-ATCTAAAATAAGTCAAAAGAGTTGAACAG-TATCTCATCTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845721 277 + 205426864 TGATTTTCATTTAATGGTGTTCTACAAAGTGAGTTTAGGCAGTGAAAGGGCACA---TG---TCCTCTATAGTTTACCAGAAAGT----AGTACCGGTC-------------------------ACCAGTGTTGAA----------------------------------------------------------------------------ACGTACTCCTAACCCTGGAAAATTTATTCAGCTGCCAGAATTAATCTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGT--ATGTGTTCATTCAGATAAGTAAATCTCCCTGGTGTTTGAACTGTATAATATCAA-ATCTAAAATAAGCCAAGAGAGTCGGACAA-TTTCTCATCTCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5349 277 +  12760026 TGATTTTCATTTAATGGTGTTCTACAAAGTGAGTTTAGGCAGTGAAAGGGCACA---TG---TCCTCTATAATTTACCAGAAAGT----AGTACTGGTC-------------------------ACCAGCATTGAA----------------------------------------------------------------------------GCATACTCCTAACCCTGGAAAATTTATTCAGCTGCCAGAATTAATCTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGT--ATGTGTTCATTCAGATTAGTAAATCTCCATGGTGTTTGAACTGTATAATATCAA-ATCTAAAATAAGCCAAGAGAGTTGGACAA-TTTCTCATCTCT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118192 277 -  86207423 TGATTTTCATTTAACGGTGTTCTACAAAGTGAGTTTAGGCAGTGAAAGGGCACA---TG---TCATCTATAGTTTACCAGAAAGT----AGTACTGGTC-------------------------ACCAGCATTGAA----------------------------------------------------------------------------GCATACTGCTAACCCTGGAAAATTTCTTCAGCTGCCAGAATTAATCTCAGATTTTAAGACTGGAGCAAAGACTAATTTGGT--ATGTGTTCATTTAGATTAGTAAATCTCCATGGTGTTCGAGCTGTATAATATCAA-ATCTAAAATAAGCCAAGAGAGTTGAAGGA-TTTCTCATCTCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204273898 277 - 204787373 TGATTTTCATTTAATGGTGTTCTACAAAGTGAGTTTAGGCAGTGAAAGGGCACA---TG---TCATATATAGTTTACCAGAAAGT----AGTACTGGTC-------------------------ACCAGCGTAGAA----------------------------------------------------------------------------GCATACTCCTAACCCTGGAAAATTTCTTCAGCTCCCAGGATTAATCTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGT--ATGTGTTCATCCAGATTAGTAAATCTCCATGGTGTTCGAACTGTATAATATCAA-ATCTAAAATAAGCCAAGAGAGTTGGACAA-TTTTTCATCTCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173123 277 - 192460366 TGATTTTCATTTAATGGTGTTCTACAAAGTGAGTTTAGGCAGTGAAAGGGCACA---TG---TCATATATAGTTTACCAGAAAGT----AGTACTGGTC-------------------------ACCAGCGTAGAA----------------------------------------------------------------------------GCATACTCCTAACCCTGGAAAATTTCTTCAGCTCCCAGGATTAATCTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGT--ATGTGTTCATCCAGATTAGTAAATCTCCATGGTGTTCGAACTGTATAATATCAA-ATCTAAAATAAGCCAAGAGAGTTGGACAA-TTTTTCATCTCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192591 277 -  11645122 TGATTTTCATTTAATGGTGTTCTACAAAGTGAGTTTAGGCAGTGAAAGGGCACA---TG---TCATATATAGTTTACCAGAAAAT----AGTACTGGTC-------------------------ACCAGCGTAGAA----------------------------------------------------------------------------GCATACTCCTAACCCTGGAAAATTTCTTCAGCTCCCAGGATTAATCTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGT--ATGTGTTCATCCAGATTAGTAAATCTCCATGGTGTTCGAACTGTATAATATCAA-ATCTAAAATAAGCCAAGAGAGTTGGACAA-TTTTTCATCTCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          177825 278 -   6739814 TGATTTTCATTTAATGGTGTTCTACAAAGTGAGTTTAGGCAGTGAAAGGGCACA---TG---TCATATATAGTTTACCAGAAAGT----AGTACTGGTC-------------------------ACCAGCGTAGAA----------------------------------------------------------------------------GCATACTCCTAACCCTGGAAAATTTCTTCAGCTCCCAGGATTAATCTCCGATTTTGAGACTGGAGCAAAGGCTAATTTGGT--ATGTGTTCATCCAGATTAGTAAATCTCCATGGTGTTCGAACTGTATAATATCAA-ATCTAAAATAAGCCAAGAGAGTTGGACAATTTTTTCATCTCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68434 277 - 101219884 TGATTTTCATTTAATGGTGTTCTACAAAGTGAGTTTAGGCAGTGAAAGGGCACA---TG---TCATATATAGTTTACCAGAAAGT----AGTACTGGTC-------------------------ACCAGCGTAGAA----------------------------------------------------------------------------GCATACTCCTAACCCTGGAAAATTTCTTCAGCTCCCAGGATTAATCTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGT--ATGTGTTCATCCAGATTAGTAAATCTCCATGGTGTTCGAACTGTATAATATCAA-ATCTAAAATAAGCCAAGAGAGTTGGACAA-TTTTTCATCTCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190003 277 -    785044 TGATTTTCATTTAATGGTGTTCTACAAAGTGAGTTTAAGCAGTGAAAGGGCACA---TG---TCATATGTAGTTTACCAGAAAGT----AGTACTGGTC-------------------------ACCAGCGTAGAA----------------------------------------------------------------------------GCATACTCCTAACCCTGGAAAGTTTCTTCAGCTCCCAGGATTAATCTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGT--ATGTGTTCATCCAGATTAGTAAATCTCCATGGTGTTCGAACTGTATAATATCAA-ATCTAAAATAAGCCAAGAGAGTTGGACAA-TTTTTCATCTCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80264 277 -  10971483 TGATTTTCATTTAATGGTGTTCTACAAAGTGAGTTTAGGCAGTGAAAGGGCACA---TG---TCATATATAGTTTACCAGAAAGT----AGTACTGGTC-------------------------ACCAGCATAGAA----------------------------------------------------------------------------GCATACTCCTAACCCTGGAAAATTTCTTCAGCTCCCAGGATTAATCTCAGATTTTGAGACTGGAGCAAAGACTAATTTGGC--ACATGTTCATCCAGATTAGTAAATCTCCATGGTGTTCGAACTGTATAATATCAA-ATCTAAAATAAGCCAAGAGAGTTGGACAG-TTTTTCATCTCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934578 274 -  13128814 TAATTTTTATTTAATGGTGTTCTACAGTATGAGTTTAGGCAGTGAAAGGGCACA---TG---TCATCTATAGCACACTGGAA-------AGTACTGGTT-------------------------ACCAACCTTGAA----------------------------------------------------------------------------GCATACTCTTAACCCTGGAAAATTTCTTCAGCTGTCAGAATTAATCTCAGATGTTGAGACTGGAATAAAGACTAATTTGAC--ATGTGTTCATCCAAAATGGTAAATTGCCTTGGTGCTCGAACTGTGCAATATCGA-ATCTAAAATAAGCCAAGAGAGTTGGATAA-TTTTTCATCTCT
i saiBol1.JH378168             C 0 C 0
s otoGar3.GL873528              20763828 378 +  38779656 cg---cccCTTTAATAGTGTTTTTAATAGTGAATTTAGACAATAAGAGGGCATAGACCA---TCACCCACAATTTACCAGAGTGTACCAaacaccagactttttttttgggggggggggcaaggaccaggtttgaacctaccacctctggtatacggggccggtgccctactccttgagccacaagcagtgcccCCAAACCCCAACCTTTTTGCATACCTCTAACCAT-GAAAATTTCACCAACTACCATAAACAA--CCAAATTTTAAGATTAGAACAAAGATTAACTTGGT--ATGTGTTCATCCAGAATTATAAATCTTCTCGGCATTTGAACCGAGTAAC-TCAA-ATATAGAATGATCCAAGAGAATTGAACAA-TTTCTGATCTCT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28796507 278 -  39895921 TGATTTTCATTTAACAGTGGTTTAGAAAGTGAGTTTAGGTGACAAACAGGTATA---TGCCATCATCTGTAGTTTATTAGAAACT----GACA---ATC-------------------------ATCAAACTTGAA---------------------------------------------------------------------------TGTATATCCCTAACCATGTAACAATTCTCCAGCTGCCAGGAGTTATCCCAAATTTTGAGATTGGAACAAAGGCTAATTTGGT--ATATTTTCATCCATAATAATAAAGTAATTTGGCATTTCAATTGTAAAAAATAAA-ATCTCGAATAGTCTAAGAGAATTGGATAA-TTTCTGCTCTCT
i canFam3.chr31                I 5 I 235
s dasNov3.JH568778               6695196 270 +   6883506 CAATTTTTATTAA----TGTTTTATGAAGTTA-CTTAGGTAATAAAAGGGCATA---CA---CTATCTATAACTTACCATAA-------GGTACCAGCC-------------------------ACCAACCTGGAT----------------------------------------------------------------------------GTAGACTGCTAACCATGGAAAATTACTCCAGTTGACAGAACTAATTCCAAATTTTGAGGTTGAAAAACAG-TTAATTTGGTAAACATATTAATCTATAATGACAAATCTACTT-CCATTTGAACTGTATAATGCCAAGATCTGGGATAGCCCACAAGAGTTGGGTAG-TTTCTGGTCCTT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884425 285 -  47401472 I
e nasLar1.chr2                    155173 564 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555  15 -   9889416 I
e cebCap1.NW_016107322v1         7665258 577 +  14377064 I

a score=24272.000000
s hg38.chr14_GL000009v2_random    188423 10 +    201709 GAG-AAAAAAA
s panTro5.chr9                  41878503 10 + 116767853 GAG-AAAAAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77845998  8 + 205426864 CAG-AAAAT--
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5626 10 +  12760026 CAG-AAAAAAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118469 10 -  86207423 CAG-AAAAAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274175  9 - 204787373 CAG-AAAAAA-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173400  9 - 192460366 CAG-AAAAAA-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192868  9 -  11645122 CAG-AAAAAA-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178103  9 -   6739814 CAG-AAAAAA-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68711 10 - 101219884 CAGAAAAAAA-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190280 10 -    785044 CAGAAAAAAA-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80541  9 -  10971483 CAG-AAAAAA-
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934852  9 -  13128814 CAG-AAAAAA-
i saiBol1.JH378168             C 0 I 1
s otoGar3.GL873528              20764206  9 +  38779656 CAA-GATAAT-
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28797020  8 -  39895921 -aa-aaaaga-
i canFam3.chr31                I 235 I 2
s dasNov3.JH568778               6695466  8 +   6883506 AAG-AATGG--
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884425 285 -  47401472 I
e nasLar1.chr2                    155173 564 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555 15 -   9889416 I
e cebCap1.NW_016107322v1         7665258 577 +  14377064 I

a score=5362.000000
s hg38.chr14_GL000009v2_random    188433 1 +    201709 A
s nomLeu3.chr21                 42118479 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274184 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173409 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192877 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178112 1 -   6739814 A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68721 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190290 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    155737 1 + 181502896 A
i nasLar1.chr2                 I 564 I 2881
s colAng1.NW_012123820v1           80550 1 -  10971483 A
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934862 1 -  13128814 G
i saiBol1.JH378168             I 1 C 0
s micMur3.chr31                 30884710 1 -  47401472 A
i micMur3.chr31                I 285 C 0
s otoGar3.GL873528              20764215 1 +  38779656 A
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28797030 1 -  39895921 G
i canFam3.chr31                I 2 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555 15 -   9889416 I
e dasNov3.JH568778               6695474 0 +   6883506 C
e cebCap1.NW_016107322v1         7665258 577 +  14377064 I
e panPan2.chr3                  77846006 0 + 205426864 C
e gorGor5.CYUI01015020v1            5636 0 +  12760026 C
e panTro5.chr9                  41878513 0 + 116767853 C

a score=111568.000000
s hg38.chr14_GL000009v2_random    188434 12 +    201709 TGCATTATTTTC
s panTro5.chr9                  41878513 12 + 116767853 TGCATTATTTTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846006 12 + 205426864 TGCATCATTTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5636 12 +  12760026 TGCATCATTTTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118480 12 -  86207423 TGCATCATTTTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274185 12 - 204787373 TGCATCATTTTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173410 12 - 192460366 TGCATCATTTTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192878 12 -  11645122 TGCATCATTTTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178113 12 -   6739814 TGCATCATTTTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68722 12 - 101219884 TGCATCATTTTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190291 12 -    785044 TGCATCATTTTC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80551 12 -  10971483 TGCATCATTTTC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934863 10 -  13128814 --TATCATTTCC
i saiBol1.JH378168             C 0 C 0
s micMur3.chr31                 30884711 12 -  47401472 TGCATTATTTCC
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20764216 12 +  38779656 TGCATATTATAC
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28797031 12 -  39895921 TGTATCATTTTC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6695474 11 +   6883506 -GCATTCTTTCC
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555 15 -   9889416 I
e cebCap1.NW_016107322v1         7665258 577 +  14377064 I

a score=217449.000000
s hg38.chr14_GL000009v2_random    188446 20 +    201709 AAGAGATTTAAGACTGAATT
s panTro5.chr9                  41878525 20 + 116767853 AACAGATTTAAGACTGAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846018 20 + 205426864 AAGAGATTTAAGATTGAATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5648 20 +  12760026 AAGAGATTTAAGATTGAATT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118492 20 -  86207423 AAGAGATTTAAGATTGAATT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274197 20 - 204787373 AAGAGATTTAAGATTGAATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173422 20 - 192460366 AAGAGATTTAAGATTGAATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192890 20 -  11645122 AAGAGATTTAAGATTGAATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178125 20 -   6739814 AAGAGATTTAAGATTGAATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68734 20 - 101219884 AAGAGATTTCAGATTGAATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190303 20 -    785044 AAGAGATTTAAGATTGAATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80563 20 -  10971483 AAGAGATTTAAGATTGAATT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934873 20 -  13128814 AAGAGGCCTAAGACTGAATT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7665835 20 +  14377064 AAGAGGTTTAAGACTGAATT
i cebCap1.NW_016107322v1       I 577 C 0
s micMur3.chr31                 30884723 20 -  47401472 AAGGGATTTAATATTGAAAT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20764228 20 +  38779656 AAGAGATTCAATATTGAAAT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28797043 20 -  39895921 AAGATATTTAAGAGTAAACT
i canFam3.chr31                C 0 I 11
s dasNov3.JH568778               6695485 18 +   6883506 AAGAGATTTGGG--TGAACT
i dasNov3.JH568778             C 0 I 3
e mm10.chr16                    22707828 3784 -  98207768 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4133555 15 -   9889416 I

a score=158439.000000
s hg38.chr14_GL000009v2_random    188466 18 +    201709 TAAAATCCAA---------------------------------CTGCCTAT
s panTro5.chr9                  41878545 18 + 116767853 TAAAATCCAA---------------------------------CAGCCGAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846038 18 + 205426864 TAAAATCCAA---------------------------------GTGCCTAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5668 18 +  12760026 TAAAATCCAA---------------------------------CTGCCTAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118512 17 -  86207423 TAAAATCCAA----------------------------------TGCCTAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274217 18 - 204787373 TAAAATCCAA---------------------------------CTGCCTAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173442 18 - 192460366 TAAAATCCAA---------------------------------CTGCCTAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192910 18 -  11645122 TAAAATCCAA---------------------------------CTGCCTAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178145 18 -   6739814 TAAAATCCAC---------------------------------CTGCCTAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68754 18 - 101219884 TAAAATCCAA---------------------------------CTGCCTAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190323 18 -    785044 TAAAATCCAC---------------------------------CTGCCTGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80583 18 -  10971483 TAAAATCCAA---------------------------------CTGCCTAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934893 18 -  13128814 TAAAATCTAA---------------------------------CTGCCTAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7665855 17 +  14377064 T-AAATCCAA---------------------------------CTGCTTAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4133570 18 -   9889416 TAAAATCCAA---------------------------------CTGCTTAT
i aotNan1.NW_018487195v1       I 15 C 0
s micMur3.chr31                 30884743 18 -  47401472 TAAAATCCAG---------------------------------CTGACTAT
i micMur3.chr31                C 0 I 166
s otoGar3.GL873528              20764248 18 +  38779656 TAAAATCCAA---------------------------------CTATGTAT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28797074 35 -  39895921 CAAAATCATAA---------CAGTCTCCAGAGG-------GGCCTGCTTAT
i canFam3.chr31                I 11 C 0
s dasNov3.JH568778               6695506 51 +   6883506 TAAAATCTAAATGGTAAATTCAGTAATCAAGTGTACCTTTGAATTGTCTAT
i dasNov3.JH568778             I 3 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=1749250.000000
s hg38.chr14_GL000009v2_random    188484 173 +    201709 TCCAGTGTATGTTTCTCTAGAATAAGACCAAGCCATACAAATTCTGGATAGTGTCCTCCAAGTT-GTG-TTTAAGTGATAATTGATAAATCTATGGTTTAGATACATATGGAATTCCACATAACTC-------TAGCT------CCAGCCTTTGCGAGTAAAAATTGGCAGTGATCA-------TGGCCTTAATG
s panTro5.chr9                  41878563 173 + 116767853 TCCAGTGTAAGTTTCTCTAGAATAAGGCCAAGCCCTACAAATTCTGGATAGTGTCCTCCAAGTT-GTG-TTTAAGTGATAATTGATAAATCTATGGTTTAGATACATATGGAATTCCATATAACTC-------TAGCT------CCAGCCTTTGTGAGTAAAAATTGGCAGTGATCA-------TGGCCTTAATG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846056 174 + 205426864 TCCAGTGTATGTTTCTCCAGAATAAGGCCAAGCCCTACAAATTCTGGATAGTGTCCTCCAAGTT-GTGTTTTAGGTGATAATTGATAAATCTATAGTTTAGGTACATATGGGATTCCATATAACTC-------TAGCT------CCTGCCTTTGTGAGTAAAAATTGGCAGTAATCA-------TGGTCTTAATG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5686 174 +  12760026 TCCAGTGTATGTTTCTCCAGAATGAGGCCAAGCCCTACAAATTCCGGATAGTGTCCTCCAAGTT-GTGTTTTAGGTGATAATTGATAAATCTATAGTTTAGATACATATGGGATTCCATATAACTC-------TAGCT------CCTGCCTTTGCGAGTAAAAATTGGCAGTAATCA-------TGGTCTTAATG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118529 172 -  86207423 TCCAGTGTATGTTTCTCTAGAATAAGGCCAAGCCCTA-AAATTCTGGAGAGTGTCCTCCAAGTT-GTG-TTTAAGTAATAATTGATAAATCTATGGTTTAGATACTTATGGAATTCCGTATAACTC-------TAGCT------CCAGCCTTTGCGAGTAAAAATTGGCAGTGACCA-------TGGCCTTAATG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274235 173 - 204787373 TCCAGTGGATGTTTCTCCAGAATAAGGCCAAGCCCCACAAATTCTGGATAGTGTCCTCCAAGTT-GTG-TTTAAGTGATAATTGACAGATCTATGGTTTAGATACATATGGAATTCCATATAACTC-------TAGCT------CCAGTCTTTGCAAGTAAAAATTGGCAGTAATCG-------TGGCCTTAGTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173460 173 - 192460366 TCCAGTGGATGTTTCTCCAGAATAAGGCCAAGCCCCACAAATTCTGGATAGTGTCCTCCAAGTT-GTG-TTTAAGTGATAATTGACAGATCTATGGTTTAGATACATATGGAATTCCATATAACTC-------TAGCT------CCAGTCTTTGCAAGTAAAAATTGGCAGTAATCG-------TGGCCTTAGTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          192928 173 -  11645122 TCCAGTGGATGTTTCTTCAGAATAAGGCCAAGCCCCACAAATTCTGGATAGTGTCCTCCAAGTT-GTG-TTTAAGTGATAATTGACAGATCTATGGTTTAGATACATATGGAATTCCATATAACTC-------TAGCT------CCAGTCTTTGCAAGTAAAAATTGGCAGTAATCG-------TGGCCTTAGTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178163 173 -   6739814 TCCAGTGGATGTTTCTCCAGAATAAGGCCAAGCCCCACAAATTCTGGATAGTGTCCTCCAAGTT-GTG-TTTAAGTGATAATTGACAGATCTATGGTTTAGATACATATGGAATTCCATATAACTC-------TAGCT------CCAGTCTTTGCAAGGAAAAATTGGCAGTAATCG-------TGGCCTTAGTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68772 173 - 101219884 TCCAGTGGATGTTTCTCCAGAATAAGGCCAAGCCCCACAAATTCTGGATAGTGTCCTCCAAGTT-GTG-TTTAAGTGATAATTGACAAATCTATGGTTTAGATACATATGGAATTCCATATAACTC-------TAGCT------CCAGTCTTTGCAAGTAAAAATTGGCAGTAATCA-------TGGCCTTAGTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190341 173 -    785044 TCCAGTGGATGTTTCTCCAGAATAAGGCCAAGCCCCACAAATTCTGGATAGTATCCTCCAAGTT-GTG-TTTAAGTGATAATTGACAGATCTATGGTTTAGATACATATGGAATTCCATATAACTC-------TAGCT------CCAGTCTTTGCAAGGAAAAATTGGCAGTAATCG-------TGGCCTTAGTG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80601 173 -  10971483 TTCAGTGGATGTTTCTCCAGAGTAAGGCCAAGCCCCACAAATTCTGGATAGTGTCCTCCAAGTT-GTG-TTTAAGTGATAACTGACACATCTATGGTTTAGATACATATGGAATTCCATATAACTC-------TAGTG------CCAGTCTTTGCGAGTAAAAATTGGCAGTAATCA-------TGGCCTTAGTG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10934911 178 -  13128814 TTCAGCAGATGTTTCTCCAGAATAAGGCCAAGCCCTACAGATTCTGGATAGTGTCCTCCAAGTT-GTG-TTTAAGTGATAATTGGTAAATCTATGGTTTAGATACATATGGGATTCCATATAATTCTAT--CTTAATT------CCAGCCTTTGTGAGTAAAAATTGGCAAAAATCA-------TGGGCTTAATG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7665872 177 +  14377064 TTCAGCAGATGTTTCTCCAGAATCAGGCCAAGCCCTACAAATTCTGGATAGTGTCCTCCAAGTT-GTG-TTTAAGTGATAATTGGTAAATCTATGGTTTAGATACATATGGAATTCCATATAATTCTAT--CCTAACT------CCAGCC-TTGTGAGTAAAAATTGGCAAAAATCA-------TGGGCTTAATG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4133588 178 -   9889416 TTCAGCAGATGTTTCTCCAGAATAAGGCCAAGCCCTACAAATTCTGGATGGTGTCCTCCAAGTT-GTG-TTTAAGTGATAATTGGTAAATCTATGGTTTAGATACATATGGAATTCCATATAGTTCTAT--CTTAACT------CCAGCCTTTGTGAATAAAAATTGGCAAAAATCA-------TGGGCTTAATG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20764266 167 +  38779656 CCCAATCGATGTTTCTCCAGAAGAAGGCCAAATATTTCAGATCCTAGATAGAGTACTCCAAGTTGGTT-TGTGAGGCATAACTGGTGAATCTGTGGTTTAAATACATACGGAATTCCACAAAACTC-------TATTTGTCTTATCAGCCTTTATGAGTAAAAA--------------------TGGTTTTAATG
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28797109 182 -  39895921 CTTAGTGGAAGCTTCTATAGA---AGGCCAAACTTTTCAACCTCTAGATAGTATAATCTAAGTC-AGC-TTTAAGTAAGAATTGGTGAATCTCTGGTTTTAATACCCATGAGATTCCACATCAGTCTTTA-TCTACCA------CTTGCCTTTTTGAGTAAAAATTGGTGGCAACAATGATGACTGACCTTCAT-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6695557 180 +   6883506 ACTAATAGAAGTTTCTCCAGAGGGATGCCAAATCTTTCAGACCCTAGATAGTGTCATCCAAGTT-GAC-TCTAAGGGATAATTGATAAATCTCTGATCTCAATACATATGGAATTCCCCATAACTCATTCTCTCAACC----TACCTGCCTTTGTGAGTAAAATTTGGCAATTATT--------TATCCTGATT-
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e micMur3.chr31                 30884761 166 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=286351.000000
s hg38.chr14_GL000009v2_random    188657 24 +    201709 GAGGCATGTGGTTAATTGGAATTT
s panTro5.chr9                  41878736 24 + 116767853 GGGGCATGTGGTTAATTGGAATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846230 24 + 205426864 GAGGCACATGGCTAATTGGAATTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5860 24 +  12760026 GAGGCACGTGGCTAATTGGAATTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118701 24 -  86207423 CAGGCGTGTGGTTAATTGGAATTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274408 24 - 204787373 GAGGTATGTGGCTAAGTGGAATTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173633 24 - 192460366 GAGGTATGTGGCTAAGTGGAATTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193101 24 -  11645122 GAGGTATGTGGCTAAGTGGAATTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178336 24 -   6739814 GAGGTATGTGGCTAATTGGAATTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68945 24 - 101219884 GAGGTATGTGGCTAACTGGAATTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190514 24 -    785044 GAGGTATGTGGCTAATTGGAATTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80774 24 -  10971483 GAAGTATGTGGCTAATTGGAATTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935089 24 -  13128814 GAGGTATGTGGCTAATTTGAATTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7666049 24 +  14377064 GAGGTATGAGGCTAATTTGAATTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4133766 24 -   9889416 GAGGTATGTGGCTAATTTGAATTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30884927 24 -  47401472 GAGGTATGTGGCTAATTGGAATTT
i micMur3.chr31                I 166 C 0
s otoGar3.GL873528              20764433 23 +  38779656 -AGGTTTGTGGCTAATCTGAATTT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28797291 24 -  39895921 GAGACAAGTGGCTAACTAGGCTTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6695737 24 +   6883506 GGGGCATGCTACTAATTAGAAGTT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22707828 3784 -  98207768 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=187430.000000
s hg38.chr14_GL000009v2_random    188681 26 +    201709 TCAGTACCA-----AAAGTCT--TCTTCTTACT
s panTro5.chr9                  41878760 26 + 116767853 TCAGTACCA-----AAAGTCG--TCTTCTTACT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846254 26 + 205426864 TCAGTACCA-----AAAGTCT--TCCTGTTACT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5884 26 +  12760026 TCAGTACCA-----AAAGTCT--TCTTGTTGCT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118725 26 -  86207423 TCGGTACCA-----AAAGTCT--TCTTGTTACT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274432 21 - 204787373 TCAGTACCA-----AAAGTCT--TCGTG-----
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173657 21 - 192460366 TTGGTACCA-----AAAGTCT--TCATG-----
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193125 21 -  11645122 TCGGTACCA-----AAAGTCT--TCATG-----
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178360 21 -   6739814 TCGGTACCA-----AAAGTCT--TCATG-----
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68969 21 - 101219884 TCGGTACCA-----AAAGTCT--TCGTG-----
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190538 21 -    785044 TCGGTACCA-----AAAGTCT--TCGTG-----
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80798 21 -  10971483 TCGGTACCA-----AAAGTCT--TTGTG-----
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935113 26 -  13128814 TTTGTACCA-----AAAGTCT--TCCTGTTACT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7666073 26 +  14377064 TTTGTACCA-----AAAGTCT--TCTTGTTACT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4133790 26 -   9889416 TTAGTACCA-----AAAGTCT--TCTCGTTACT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30884951 26 -  47401472 TTATTAGCA-----AAGGTCT--TCTTGTTACT
i micMur3.chr31                C 0 I 69
s otoGar3.GL873528              20764456 33 +  38779656 TCACTGGGAAAATGAAAGTTTACTCTTGTTACT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22711612 26 -  98207768 tcaattcca-----aatcact--ccttattgtt
i mm10.chr16                   I 3784 C 0
s canFam3.chr31                 28797315 26 -  39895921 TTAGTACCA-----AAGCCCC--TATTGGTACC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6695761 26 +   6883506 TTAGGACCA-----AAGGTCC--TATTGTTAAC
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=638654.000000
s hg38.chr14_GL000009v2_random    188707 68 +    201709 AGTTTATCAGGGTAC-CCTATAATAGTATCCA-TAACTCATTGCCCACTTGTCTGTTTTGATTTC-TTTTT
s panTro5.chr9                  41878786 68 + 116767853 AGTTTATCAGGGTAC-CCTATAATAGTATCCA-TAACTCATTGCCCACTTGTCTGTTTTGATTTC-TTTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846280 66 + 205426864 AGGTTATCAGGGTAC-CCTATAATAGTATCCA-TAACTCATTGCCCACTTGTCTATTTTGACTTC-TTT--
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5910 67 +  12760026 AG-TTATCAGGGTAC-CCTATAATAGTATCCA-TAACTCATTGCCCACTTGTCTATTTTGACTTC-TTTTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118751 68 -  86207423 AGGTTATCGGGGTAC-CCTATAATAGTATCCA-TAACTCATTGCCCACTTGTCTGTTTTGATTTC-TTTTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274453 65 - 204787373 ---TTATCAGGGTAC-CCTGTAATGGTATCCA-TAACTCATTGCCCACTTGTCCGTTTTGATTTC-TTTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173678 65 - 192460366 ---TTATCAGGGTAC-CCTGTAATGGTATCCA-TAACTCATTGCCCACTTGTCCGTTTTGATTTC-TTTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193146 65 -  11645122 ---TTATCAGGGTAC-CCTGTAATGGTATCCA-TAACTCATTGCCTACTTGTCCGTTTTGATTTC-TTTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178381 65 -   6739814 ---TTATCAGGGTAC-CCTGTAATAGTATCCA-TCACTCATTGCCCACTTGTCCGTTTTGATTTC-TTTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    68990 66 - 101219884 ---TTATCAGGGTAC-CCTGTAATAGTATCCA-TAACTCATTGCCCACTTGTCCGTTTTGATTTCTTTTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190559 65 -    785044 ---TTATCAGGGTAC-CCTGTAATGGTATCCA-TCACTCATTGCCCACTTGTCCGTTTTGATTTC-TTTTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80819 65 -  10971483 ---TTATCCGGGCAC-CCTAAAATGGTATCCA-TAACTCATTGCCCACTTGTCTGTTTTGATTTC-TTTTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935139 68 -  13128814 AGGTTTTCAGTATAC-CCTAGAATAGTACCCA-TAACTCATTGCCCACTTGTCTATTTTGATTTC-TTTTT
i saiBol1.JH378168             C 0 I 184
s cebCap1.NW_016107322v1         7666099 68 +  14377064 AGGTTTTCAGTGTAC-CCTAGAATAGTACCCA-TAACTCATTGCCCACTTGTCTATTTTGATTTC-TTTTT
i cebCap1.NW_016107322v1       C 0 I 311
s aotNan1.NW_018487195v1         4133816 68 -   9889416 AGGTTTTCAGTGTAC-CCTAGGATAGTACCCA-TAACTCATTGTCCACTTGTCTATTTTGATTTC-TTTTT
i aotNan1.NW_018487195v1       C 0 I 318
s otoGar3.GL873528              20764489 68 +  38779656 TGCTGATCTGAATAT-CTACGGAGAGTACTCA-TAACCCGTTGCTTTCCTGTCAATTTTGATTTT-GTTTT
i otoGar3.GL873528             C 0 I 2
s mm10.chr16                    22711638 49 -  98207768 aggTTATTAGAGTAT-TCAATA------------CACTCATTGGAACCTTCT--------ATTTT-TTCTT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28797341 61 -  39895921 AGGTTACCAGGGTACTCTTACCACAGTGCCCA-TAATTGGGTGTCCAATTATT--------TCTC-TTTTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6695787 68 +   6883506 AGATTGCCAGAATAT-TCTATAACAGTACTAAGTAACTCCTTTCCCATTTG-CCACTTTGATTCA-TTTTT
i dasNov3.JH568778             C 0 I 6
e micMur3.chr31                 30884977 69 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=32829.000000
s hg38.chr14_GL000009v2_random    188775 7 +    201709 -T-AAAAAT
s panTro5.chr9                  41878854 6 + 116767853 ---AAAAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846346 6 + 205426864 ---AAAAAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5977 7 +  12760026 -T-AAAAAG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118819 7 -  86207423 -T-AAAAAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274518 7 - 204787373 -T-AAAAAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173743 7 - 192460366 -T-AAAAAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193211 7 -  11645122 -T-AAAAAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178446 7 -   6739814 -T-AAAAAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69056 7 - 101219884 -T-AAAAAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190624 7 -    785044 -T-AAAAAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80884 8 -  10971483 -TAAAAAAG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935391 7 -  13128814 -t-aaaAAG
i saiBol1.JH378168             I 184 C 0
s cebCap1.NW_016107322v1         7666478 7 +  14377064 -t-aaaaaG
i cebCap1.NW_016107322v1       I 311 C 0
s aotNan1.NW_018487195v1         4134202 7 -   9889416 -t-aaaaaG
i aotNan1.NW_018487195v1       I 318 C 0
s otoGar3.GL873528              20764559 5 +  38779656 -T-AAAG--
i otoGar3.GL873528             I 2 C 0
s mm10.chr16                    22711687 3 -  98207768 -T-AA----
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28797402 6 -  39895921 -T-AAAAG-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6695861 7 +   6883506 TT-AAAAC-
i dasNov3.JH568778             I 6 C 0
e micMur3.chr31                 30884977 69 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=115643.000000
s hg38.chr14_GL000009v2_random    188782 8 +    201709 ACAATTTT
s panTro5.chr9                  41878860 8 + 116767853 ACAAATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846352 8 + 205426864 ACAATTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5984 8 +  12760026 ACAATTTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42118826 8 -  86207423 ACAATTTT
i nomLeu3.chr21                C 0 I 297
s rheMac8.chr2                 204274525 8 - 204787373 ACAATTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173750 8 - 192460366 ACAATTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193218 8 -  11645122 ACAATTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178453 8 -   6739814 ACAATTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69063 8 - 101219884 ACAATTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190631 8 -    785044 ACAATTTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80892 8 -  10971483 ACAATTTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935398 8 -  13128814 ACAATTTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7666485 8 +  14377064 ACAATTTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4134209 8 -   9889416 ACAATTTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30885046 8 -  47401472 ACAATTTT
i micMur3.chr31                I 69 C 0
s otoGar3.GL873528              20764564 8 +  38779656 ATAATTTT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22711690 4 -  98207768 ----TTTT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28797408 8 -  39895921 ACAATTTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6695868 7 +   6883506 -AAATTTC
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=914164.000000
s hg38.chr14_GL000009v2_random    188790 73 +    201709 AAACTTAGAGGTTTTGTA-CCTCAAGTCACATATGTGGCACATTTATAA-AATAATCATGCCTTTGCATATTTTT
s panTro5.chr9                  41878868 73 + 116767853 AAACTTAGAGGATTTGTA-CCTCAAGTCATATATGTGGCACGTTTATAA-AATAATCATTCCTTTGCATATTTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846360 73 + 205426864 AAACTTAGAGGTTTTGTA-CCTCAATTTACATATGCAGCATATTTATAA-AATAATCATGCCTTTGCATATTTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            5992 73 +  12760026 AAACTTAGAGGTTTTGTA-CCTCAATTTACATATGCAGCACATTTATAA-AATAATCATGCCTTTGCATATTTTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42119131 73 -  86207423 AAACTTGGAAGTTTTGTA-CCTCAATTCACATATGTGGCATATTTATAA-AATAATCATGCCTTTGCATATTTTT
i nomLeu3.chr21                I 297 C 0
s rheMac8.chr2                 204274533 73 - 204787373 AAACTTAGAGGTTTTGTA-CCTCAATTCACATACGTGGCACATTTATAA-AATAATCATGCCTTTGCATAGTTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173758 73 - 192460366 AAACTTAGAGGTTTTGTA-CCTCAATTCACATACGTGGCACATTTATAA-AATAATCATGCCTTTGCATAGTTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193226 73 -  11645122 AAACTTAGAGGTTTTGTA-CCTCAATTCACATACGTGGCACATTTATAA-AATAATCATGCCTTTGCATAGTTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178461 73 -   6739814 AAACTTAGAGGTTTTGTA-CCTCAATTCACATATGTGGCACATTTATAA-AATAATCATGCCTTTGCATAGTTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69071 73 - 101219884 AAACTTAGAGGTTTTGTA-CCTCAATTCACATACGTGGCACATTTATAA-AATAATCATGCCTTTGCATAGTTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190639 73 -    785044 AAACTTAGAGGTTTTGTA-CCTCAATTCACATATGTGGCACATTTATAA-AATAATCATGCCTTTGCATAGTTTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80900 73 -  10971483 AAACTTAGAGGTTTTGTA-CGTCAATTCACATACGTGGCACATTTATAA-AATAATCATGCCTTTGCATAGTTTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935406 73 -  13128814 AAACTTAGAGGTTTTGTA-CATCAATTCACAAATGTGGTACTTTTATAA-AATAATCATGCCTTTGCATATTTTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7666493 73 +  14377064 AAACTTAGAGGTTTTGTA-CATCAATTCACAAATGTGGCACGTTTATAA-AATAATCATGCCTTTGCATATTTTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4134217 73 -   9889416 AAACTTAGAGGTTTTGTA-CCTCAATTCACAAATGTGGCACATTTATAA-AATAATCATGCTTTTGCATATTTTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30885054 72 -  47401472 AAACTTAGAGATTTTG-G-CCTTGATTTATACATGTGACACACTTATAA-AATAATCATGCCTTGGCATATTTTT
i micMur3.chr31                C 0 I 175
s otoGar3.GL873528              20764572 72 +  38779656 CAAGTTGGAGATTTTG-G-CATTGCCTTACACATGTGGCACATTTATAA-GATAATCATGTCTTGGCATATTTTT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22711694 74 -  98207768 AATCTTAGAAAATTCATG-TCTCAGTTGACAACAATGTCACAAGATTAATAATAATTATGCCTTTGCACATTTTC
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28797416 70 -  39895921 AAATGTAGGGTTTTATGG-TTTTGATTTATACATATGGCTTATTCA----TATATTCATGCCTTTGAATGTGTTT
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6695875 72 +   6883506 --ACTTAATGATTTTGTGTCCTTGATTCACACATTTGGCTCATTTAAAA-AATAATCATGCCTTTGCATAACTTT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=1574434.000000
s hg38.chr14_GL000009v2_random    188863 175 +    201709 CCTTTGATATCTTAGCTGTATATACAAGCCACTTATG---TTTTTTAATT----GCCACAAA-TATTGCACTGAAATAGAGCACTAGTT--------------------GCAAAAATGCCTGGTATAACATTTCTTCTTG---T---TCTTGAAAGTAATTTTAATACCCCATGTTTAAGATATTCCTAGACAACTATAAGTAACTATA
s panTro5.chr9                  41878941 175 + 116767853 CCTTTGTTATCTTAGCTATATATCCAAGCCATTTATG---TTTTTTAATT----GCCACAAA-TATTGCACTGAAATAGAGCACTAGTT--------------------GCAAAAATGCCTGGTATAACATTTCTTCTTG---T---TCTTGAAAGTTATTTTAATACCCCATGTTTAAGATATTCCTAGACAACTATATGTAACTATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846433 174 + 205426864 CCTTTGATATCTTAACTATATATCCAAGCCATTTATG---TTGTTTAATT----GCCACAAA-TATCGCACTGAAATAGAGTAATAGAT--------------------ACAAAAATGCCTGGTATAACATTTATTCTTG---T---TCTTGAAAGTTATTTTAAT-CCCTATGTTTAATATATTCCTAGACAATTATATGTAACTATA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            6065 174 +  12760026 CCTTTGATATCTTAACTATATATCCAAGCCATTTATG---TTGTTTAATT----GCCACAAA-TATCGCACTGAAATAGAGTACTAGGT--------------------ACAAAAATGCCTGGTATAACATTTATTCTTG---T---TCTTGAAAGTTATTTTAAT-CCCTATGTTTAATATATTCCTAGGCAATTATATGTAACTATA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42119204 174 -  86207423 CCTTTGATACCTTAGCTATATATCCAAGCCATTTATG---TTTTTTAATT----GCCACAAA-TATCGCACCGAAGTACAGCACTAGGT--------------------ACAAAAATGCCTGGTATAACATTTCTTCTTG---T---TCTTGAAAGTTATTTTAAT-CCCCATGTTTAAGATATTCCTAGACAGCTATATGTAACTATA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274606 174 - 204787373 CCTTTGATATCTTAACTATATATCCAAGCCATTTATG---TTTTTCAATT----GCCACAAA-TATCGCACCCAAATAGAGCATTAGGT--------------------ACAAAAATGCCTGGCACAACATTTCTTCTTG---T---TCTTGAAAGTTATTTTAAT-CCCCATGTTTAATATATTCCTAGACAATTAGATGTAACTATA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    173831 174 - 192460366 CCTTTGATATCTTAACTATATATCCAAGCCATTTATG---TTTTTCAATT----GCCACAAA-TATCGCACCCAAATAGAGCATTAGGT--------------------ACAAAAATGCCTGGCACAACATTTCTTCTTG---T---TCTTGAAAGTTATTTTAAT-CCCCATGTTTAATATATTCCTAGACAATTAGATGTAACTATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193299 174 -  11645122 CCTTTGATATCTTAACTATATATCCAAGCCATTTATG---TTTTTCAATT----GCCACAAA-TATCGCACCCAAATAGAGCATTAGGT--------------------ACAAAAATGCCTGGCACAACATTTCTTCTTG---T---TCTTGAAAGTTATTTTAAT-CCCCATGTTTAATATATTCCTAGACAATTAGATGTAACTATA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178534 173 -   6739814 CCTTTGATATCTTAACTATATATCCAAGCCATTTATG---TTTTTCAATT----GCCACAAA-TATCGCACCCAAATAGAGCATTAGGT--------------------AC-AAAATGCCTGGCACAACATTTCTTCTTG---T---TCTTGAAAGTTATTTTAAT-CCCCATGTTTAATATATTCCTAGACAATTATATGTAACTATA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69144 174 - 101219884 CCTTTGATATCTTAACTATATATCCAAGCAATTTATG---TTTTTTAATT----GCCACAAA-TATCGCACCCAAATAGAGCATTAGGT--------------------ACAAAAATGCCTGGCACAACATTTCTTCTTG---T---TCTTGAAAGTTATTTTAAT-CCCCATGTTTAATATATTCCTAGACAATTATATGTAACTATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190712 173 -    785044 CCTTTGATATCTTAACTATATATCCAAGCCATTTATG---TTTTTCAATT----GCCACAAA-TACCGCACCCAAATAGAGCATTAGGT--------------------AC-AAAATGCCTGGCACAACATTTCTTCTTG---T---TCTTGAAAGTTATTTTAAT-CCCCATGTTTAATATATTCCTAGACAATTATATGTAACTATA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           80973 174 -  10971483 CCTTTGATATCTTAACTATATATCCAAGCCATTTATG---TTTTTTAATT----GCCACAAA-TATCGCACCCAAATAGAGCATTAGGT--------------------ACAAAAATGCCCGGCACAACATTTCTTCTTG---T---TCTTGAAAGTTATTTTAAT-CCCCATGTTTGATATATTCCTAGACAATTATATGTAACTATA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935479 167 -  13128814 CCTTTGATATCTTAACTATATATCCAAGCCATTAACA---TTTTTTAGTT----ACCGCAAATTATTGTAACTAAGTATAGCACTAATT--------------------ACAAAAATGCCTGGTATAACAT---TTCTTG---T---TCTTGAAAA-----TTAAT-TCACATGTTTAATATATTCCTATACAATTGTAGGTAACTATA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7666566 166 +  14377064 CCTTTGATACCTTAACTATGTGTCCAAGCCATTAATG---TTTTTTAATT----GCCACAAA-TGTGGCACCTAAGTATAGCACTAGTT--------------------ACAAAAATGCCTGGTATAACAT---TTCTTG---T---TCTTGAAAA-----TTAAT-TCACATGTTTAATATATTCCTATACAATTGTAGGTAACTATA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4134290 164 -   9889416 CCTTTGATATCTTAACTATGTGTCCAAGCCATTAATG---TTTTTTAATT----GCCACAAA-TATTGTACCTAGGTATAGCACTAGTT--------------------ACAAAAATGCCTGGTATAACAT---TTCTTG---T---TCTTGAAAA-----TTAAT-TCAC--GTTTAATATATTCCTATACAATTGTAGGTAACTATA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20764644 162 +  38779656 ----TGA-----TAGTTAAATATCTAAGCCATTTATAATTTCTTGTAATT----GTCAAAAA-TG--ACACTCAAATATAGTATTAGAT--------------------A-AGCAATCCCTAATATCACATTTATTTCTGAGAC---CCTTGGAAATTCT-TTCAT-CTACCTGTTTAATTTATCCCTGCATAATTATTGGTAA-----
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22711768 145 -  98207768 --ATCAATAGATTG-----ATAATTAAACAATGAATA---CATTTTAATT----ATCATAAA-------------ACAAATCAT----------------------------GAAATGCCT-----AATGTATATTTTTG---TGCCCCTTAAAAATTCTCTCCCC-TAACAGGCTGCATGAATCCCTGAGTAATTGTATATAATTTTA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28797487 192 -  39895921 TCTTTGTTAACTTAG----ATATTCATGGTATTCATG---TTTTTTTTTTTTTGGTCAGAAA-AAT---AACCAAATATACTACTGTATCAAGAAATGACTAAAAGAAAAAAGAAATGCTGGATATAATATTTATTCTTA---CAACCCTTGAA--TTATTTCAAT-CCATGTATTTAATTCACCCCCAGGTAATTGTATGTAATTATA
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6695947 161 +   6883506 CCTTTAA---CTTAATTAGATATCCAAGACATTCATG---TATTTTTTTT----GTCAGAAA-AAT---------GTATAGCACTAAAT--------------------CAGGAAAAGCCTGATATAGCA----TTCCTG---TGACTCTTGAAAATTCCTTCAAT-CCTTACATTTAATTTTTCCTTGGATAATTGAATATAACTGTA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30885126 175 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=42200.000000
s hg38.chr14_GL000009v2_random    189038 3 +    201709 ATT
s panTro5.chr9                  41879116 3 + 116767853 ATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846607 3 + 205426864 ATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            6239 3 +  12760026 ATT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42119378 3 -  86207423 ATT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274780 3 - 204787373 ATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    174005 3 - 192460366 ATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193473 3 -  11645122 ATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178707 3 -   6739814 ATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69318 3 - 101219884 ATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190885 3 -    785044 ATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           81147 3 -  10971483 ATT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935646 3 -  13128814 ATT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7666732 3 +  14377064 ATT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4134454 3 -   9889416 ATT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30885301 3 -  47401472 ATT
i micMur3.chr31                I 175 C 0
s otoGar3.GL873528              20764806 2 +  38779656 -TT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22711913 3 -  98207768 ATG
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28797679 3 -  39895921 ATG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6696108 3 +   6883506 ATT
i dasNov3.JH568778             C 0 I 3
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           90789 880 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=46163.000000
s hg38.chr14_GL000009v2_random    189041 3 +    201709 ATT
s panTro5.chr9                  41879119 3 + 116767853 ATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846610 3 + 205426864 ATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            6242 3 +  12760026 ATT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42119381 3 -  86207423 ACT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274783 3 - 204787373 ATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    174008 3 - 192460366 ATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193476 3 -  11645122 ATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178710 3 -   6739814 ATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69321 3 - 101219884 ATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190888 3 -    785044 ATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           81150 3 -  10971483 ATT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935649 3 -  13128814 ATT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7666735 3 +  14377064 ATT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4134457 3 -   9889416 ATT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30885304 3 -  47401472 ATT
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           91669 3 +   1229009 ATT
i eulFla1.LGHW01000695v1       I 880 I 151
s otoGar3.GL873528              20764808 3 +  38779656 ATT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22711916 3 -  98207768 ATG
i mm10.chr16                   C 0 I 2
s canFam3.chr31                 28797682 3 -  39895921 GCT
i canFam3.chr31                C 0 I 2
s dasNov3.JH568778               6696114 3 +   6883506 ATT
i dasNov3.JH568778             I 3 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=1748142.000000
s hg38.chr14_GL000009v2_random    189044 148 +    201709 TCT-GCTAGGTAGAAGCATCTTTGTGGTCAACATTTGTG--AAGTGCCTTGTAAATAAAAATATGCTTGAGTAGAAATAGTATTT--TGCAAATATAGCCCTAAATAGAGCTACTGA-TTTTACCAAAAATTAAGGA-CTCCAAACTCTGTCTTT
s panTro5.chr9                  41879122 148 + 116767853 TCT-GCTAGGTAGAAACATCTTTGTGGTCAACATTTGTG--AAGTGCCTTGTAAATAAAAATATGCTTGAGTAGAAATAGTATTT--TGCAAATATATCCCTAAATAGAGCTACTGA-TTTTACCAAGAATTAAAGA-CTCCAAACTCTGTCTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846613 148 + 205426864 TCT-GCTAGGTAGAAATATTTTTGTGGTCAACATTTGTG--AAATGCCTTGTAAATAAAAATATGCTTGAGTAGAAATAGTATTT--TGCAAATATAGCCCTAAATAGAGCTACTGA-TTTTACCAAGAATTAAAGA-CTCCAAACCCTGTCTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            6245 146 +  12760026 TCT-GCTAGGTAGAAATATTTTTGTGGTCAACATTTGTG--AAATGCTTTGTAAATAAAAATATGCCTGAGTAGAAATAGTATTT--TGCAAATATAGCCCTAAAT--AGCTACTGA-TTTTACCAAGAATTAAAGA-CTCCAAACCCTGTCTTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42119384 141 -  86207423 TCT-TCTAGGTAGAAACATCTCTGTGGTCAACACTTGTG--AAGTACCTTGTAAATAAAAATATGCTTGAGTAGAAATAGTATTT--TGCAAATATAGCCCTAAATAGAACTACTGA-TTT---CAAGAATTAAAGA-CTCCAAAC----TCTTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274786 148 - 204787373 TCT-GCTAGGTAGAGACATTTTTGTGGTCAACATTTGTG--AAGTGCTTTGTAAATAAAAACATGCTTGAGTAGAAACAGTATTT--TGGAAACAGAGCCCTAAATAGAGCTACTGA-TTTTTCCAAGAATTAAAGA-CTCCAAACTCTGTCTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    174011 148 - 192460366 TCT-GCTAGGTAGAGACATTTTTGTGGTCAACATTTGTG--AAGTGCTTTGTAAATAAAAACATGCTTGAGTAGAAACAGTATTT--TGCAAACAGAGCCCTAAATAGAGCTACTGA-TTTTTCCAAGAATTAAAGA-CTCCAAACTCTGTCTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193479 148 -  11645122 TCT-GCTAGGTAGAGACATTTTTGTGGTCAACATTTGTG--AAGTGCTTTGTAAATAAAAACATGCTTGAGTAGAAACAGTATTT--TGCAAACAGAGCCCTAAATAGAGCTACTGA-TTTTTCCAAGAATTAAAGA-CTCCAAACTCTGTCTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178713 148 -   6739814 TCT-GCTAGGTAGAAACATTTTTGTGGTCAACATTTGTG--AAGTGCTTTGTAAATAAAAATATGTTTGAGTAGAAACAGTATTT--TGCAAAGAGAGCCCTAAATAGAGCTACTGA-TTTTTCCAAGAATTAAAGA-CTCCAAACTCTGTCTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69324 148 - 101219884 TCT-GCTAGGTAGAAACATTCTTGTGGTCAACATTTGTG--AAGTGCTTTATAAATAAAAACATGCTTGAGTAGAAACAGTATTT--TGCAAACATAGCCCTAAATAGAGCTACTGA-TTTTTCCAAGAATTAAAGA-CTCCAAACTCTGTCTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          190891 148 -    785044 TCT-GCTAGGTAGAAACATTTTTGTGGTCAACATTTGTG--AAGTGCTTTGTAAATAAAAATATGTTTGAGTAGAAACAGTATTT--TGCAAAGAGAGCCCTAAATAGAGCTACTGA-TTTTTCCAAGAATTAAAGA-CTCCAAACTCTGTCTTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           81153 147 -  10971483 TCT-GCTAGGTAGAAACATTTTTGTGGTCGATATTTGTG--AAGTGCTTTGTAAATAAAAATATGCTTGAGTAGAAACAGTATTT--TGCAAACGTAACCCTAAACAGAGCTACTGA--TTTTCCAAGAATGAAAGA-CTCCAAGCTCTGTCTTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935652 147 -  13128814 TCT-GCTAGGTATAAATATTTTTGTGGTCAGCATTTGTG--AATTGTCTTGTAAATAAAAATA-GCTTAAGTAGAAGTAGTAATT--TGCGAATATGGCCCTAAATAGAGCTACTGA-TTTTTCTAAGAATTAAAGA-TCCCAAAATATGTCTTC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7666738 147 +  14377064 TCT-GCTAGGTACAAATATTTTTGTGGTCAACCTTTGTG--AATTGTCCTGTCAATAAAAATA-GCTTGAGTAGAAGTAGTATTT--TGCAAATATGGCCCTAAATAGAACTACTGA-TTTTTTTAAGAATTAAAGA-TCCCAAAATCTGTCTTC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4134460 148 -   9889416 TCT-GCTAGGTATAAATATTTTTGTGGTCAACATTTGTG--AATTGTCTTGTAAATAAAAATA-GCTTGAGTAGAAGTAGTTTTT--TGCAAATATGGCCCTAAATAGAACTACTGA-TTTTTCTAAGAACTAAAGATTCTCAAAATCTGTCTTC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30885307 149 -  47401472 CCT-GATAGGTAAAAACATTTGTGTGATTAACAGTTATA--AAATGCATTGTAAATGAAAATATGCTTAAGTAGAAATGGTATTC--TGTAAATATTACGCTAATTAGGACTGCTGATTTTTTCCAAGGATTGAAGA-TTCCTAAATCTATCTTT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20764811 150 +  38779656 CTT-GCGAGGTAAAAACATTTTTGAGGTTAAAATTTATATGAAGTGCATTGTAAATGAAAACATGCTTGAGTAGAAATAGTATTC--TGCAAATACTACACTAATTAGGACTGCTGA-TTTTTCCAAGGATTGAAGA-TCCCTAAATCTATCTTT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22711921 149 -  98207768 TCTAATTAGCTCAAAACATTTTGGTGGTGAACACTTATG--AAGTACATTGTAAATGAAAATAAACTTCAGCAGTAATGGCTTTTAAAAAAAATATTTTCCTAATTAGAATTGCTGA-TTTTTCTAAGAATTGAAGG-TCCCCG--TTTGTCTTT
i mm10.chr16                   I 2 C 0
s canFam3.chr31                 28797687 142 -  39895921 TTT-GATAGCCAGAAACATTTGTGTGGTTAACACTGATA--AAGTGTTTTGCAAATAAAAACATGTTTGAGTAGAAATAGTATTC--TACAGAAATTTCCCTTATTAGA---ATTGA-TTTTCCAAAGGATTCAGAT-TCCCAG---CTGTCTGT
i canFam3.chr31                I 2 C 0
s dasNov3.JH568778               6696117 135 +   6883506 CCT-GCTAGTCAGAAACATTAGTGTGGTTAACACTTATA--AAATGCATTGTAAATGAAAA-------------AATTTATATTT--TGCAAATATGACCCTGAAGAGAATTCCTAA-TATATCTAAGGATTTAAAG-CCCCTAAATTTGTTTTT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           91672 151 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=22960.000000
s hg38.chr14_GL000009v2_random    189192 2 +    201709 GT
s panTro5.chr9                  41879270 2 + 116767853 GT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846761 2 + 205426864 GT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            6391 2 +  12760026 GT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42119525 2 -  86207423 GT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274934 2 - 204787373 GT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    174159 2 - 192460366 GT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193627 2 -  11645122 GT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178861 2 -   6739814 GT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69472 2 - 101219884 GT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          191039 2 -    785044 GT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           81300 2 -  10971483 GT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935799 2 -  13128814 AT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7666885 2 +  14377064 AT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4134608 2 -   9889416 AT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30885456 2 -  47401472 AT
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           91823 2 +   1229009 AT
i eulFla1.LGHW01000695v1       I 151 I 98
s otoGar3.GL873528              20764961 2 +  38779656 AT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22712070 1 -  98207768 -C
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28797829 2 -  39895921 AT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6696252 2 +   6883506 GT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=1156254.000000
s hg38.chr14_GL000009v2_random    189194 88 +    201709 CTTTCAAATTTGGTTTATAGGAACATCTCATTACAATGAGCAAAAAGCCTATCTGATCACTAAAGAG-ATAATTTTGACACTTCCAAAT
s panTro5.chr9                  41879272 88 + 116767853 CTTTCAAATTAGGTTTATAGGAACATCTCATTACAATGAGCCAAAAGCCTATCTGATCATTAATGAG-ATAATTTTGACGCTTCCAAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846763 88 + 205426864 CTTTCAACTTTGGTTTATAGGAACATCTAATTACAATGAGCCAAAAGCCTATCTGATCATTAATGAG-GTAAATTTGACACTTCCAAAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            6393 88 +  12760026 CTTTCAACTTTGGTTTATAGGAACATCTAATTACAATGAGCCAAAAACCTATCTGATAATTAATGAG-GTAAATTTGACACTTCCAAAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42119527 88 -  86207423 CTTTCAACTTTGGTTGATAGGAACATCTCATTACAATGAGCCAAAAGCTTATGTGACCATTAATGAG-GTAATTTTGACACTTCCAAAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204274936 88 - 204787373 CTTCTAACTTTGGTTTATAGGAACATCTCATTACAATGAACCAAAAGCTTATTTGATCAGTAATGAG-GTAATTTTGACACTTCCAAAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    174161 88 - 192460366 CTTCTAACTTTGGTTTATAGGAACATCTCATTACAATGAACCAAAAGCTTATTTGATCAGTAATGAG-GTAATTTTGACACTTCCAAAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193629 88 -  11645122 CTTCTAACTTTGGTTTATAGGAACATCTCATTACAATGAACCAAAAGCTTATTTGATCAGTAATGAG-GTAATTTTGACACTTCCAAAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178863 88 -   6739814 CTTCCAACTTTGGTTTATAGGAACATCTCATTACAATGAACCAAAAGCTTATTTGATCAGTAATGAG-GTAATTTTGACACTTCCAAAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69474 88 - 101219884 CTTCCAACTTTGGTTTATAGGAACATCTCATTACAATGAACCAAAAGCTTATTTGATCATTAATGAG-GTAATTTTGACACTTCCAAAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          191041 88 -    785044 CTTCCAACTTTGGTTTATAGGAACATCTCATTACAATGAACCAAAAGCTTATTTGATCAGTAATGAG-GTAATTTTGACACTTCCAAAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           81302 88 -  10971483 CTTTCGACTTTGGTTTATAGGAACATCTCATTACAATGAACCAAAAACTTATTTGATCACTAATGAG-GTAATTTTGACACTTCCAAAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935801 87 -  13128814 CCTTCAACTTTGGTTTATAGGAACATCTCATTACAAAGGGCCAAAATCCTATTTGATCATTAATGAG-GTAATTTTAGCACTTCC-AAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7666887 88 +  14377064 CTTTCAACTTTGGTTTAAAGGAACATCTCATTACAAAGAGCCAAAATCCTATTTGATCATTAATGAG-TTAATTTTAGCACTTCCAAAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4134610 88 -   9889416 CTTTCAACTTTGGTTTGTAGGAACATCTCATTACAAAGAGCCAAAATCCTATTTGATCATTAATGAG-GTAATTTTAGCACTTCCAAAT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30885458 88 -  47401472 CTTTCAACTTTGGTTTATAAGAACATCTCATTATAATGAGGCAAAGGCCGATTTGATCATTAATGAG-CTAATTTTAACACTTCCAAAT
i micMur3.chr31                C 0 I 10
s otoGar3.GL873528              20764963 88 +  38779656 CTTTCAACTTTGGTATATAGAAACATCTCATTATAATGAGCTGAAGGCCTATTTGATCATTAATGAG-CTAATATTAACACTTCCAGAT
i otoGar3.GL873528             C 0 I 10
s mm10.chr16                    22712072 87 -  98207768 CTTTCAATTTTGGTTCACAGAAACATCTTATCATAAAGAGTCAAAGGC-TATTTGATCATTAATGAG-GTCACTTTCACACTTCTAAAT
i mm10.chr16                   I 1 I 10
s canFam3.chr31                 28797831 89 -  39895921 CATTCAGCTTTGGATCATAGGAACATTTCGTTAAAATGAGCCAAGGGCCTATTTGATAATTAATAAGAATAATTTTAACACTTAAAAAT
i canFam3.chr31                C 0 I 10
s dasNov3.JH568778               6696254 80 +   6883506 CATTCAACTTTGATTCACAG---TATCTCATTTTAATAAGCTGA--GTCTTTTTGATCACT---GAG-GCAAATTTAACACTTCCTAAT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           91825 98 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=27983.000000
s hg38.chr14_GL000009v2_random    189282 5 +    201709 ---GACAC
s panTro5.chr9                  41879360 5 + 116767853 ---GACAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846851 5 + 205426864 ---GATGC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            6481 5 +  12760026 ---GACAC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42119615 5 -  86207423 ---GACAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204275024 4 - 204787373 ---GAC-C
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    174249 4 - 192460366 ---GAC-C
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193717 4 -  11645122 ---GAC-C
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178951 4 -   6739814 ---GAC-C
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69562 5 - 101219884 ---GACAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          191129 4 -    785044 ---GAC-C
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           81390 5 -  10971483 ---GACAC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935888 5 -  13128814 ---GACAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7666975 5 +  14377064 ---GACAC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4134698 5 -   9889416 ---GGCAC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30885556 5 -  47401472 ---GACAC
i micMur3.chr31                I 10 C 0
s eulFla1.LGHW01000695v1           91923 5 +   1229009 ---GACAT
i eulFla1.LGHW01000695v1       I 98 I 824
s otoGar3.GL873528              20765061 5 +  38779656 ---GACAC
i otoGar3.GL873528             I 10 C 0
s mm10.chr16                    22712169 5 -  98207768 ---GACAC
i mm10.chr16                   I 10 C 0
s canFam3.chr31                 28797930 5 -  39895921 ---GACAT
i canFam3.chr31                I 10 C 0
s dasNov3.JH568778               6696334 5 +   6883506 AGCAA---
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=3184476.000000
s hg38.chr14_GL000009v2_random    189287 245 +    201709 AGCTAA---TTTGTAGTAGGTTTTTGAAGTGCAAATTACATGTTTCTGTTTAAATAATGACAGTAAAATATGGACAGTATCTATTCACACTCTA-TATACACAACTA----CAACTTGTCCCTAGAAGAAAAGTTTAA-TTTTTCAGGTCTCATCCAC-AAAACGAAGTGTTAATAAGCTGTATCTTTATACTCACTTTTAAGTAATTTCTTCTTAACCATTGTATAACACTACCACAGTTTGTATGGAGATAAA-
s panTro5.chr9                  41879365 244 + 116767853 AGCTAA---TTTGTACTAGGTTTTTGAAGTGCAAATTACATGTTTCTGTTTAAATAATTACTGTAAAATATGGACACTATCTATTCACACTCTA-TATACACAACTA----CAACTTGTCTCTAGAAGAAAAGTTTAA-TTTTTCAGGTTTCATCCAC-AAAATGAAGTGTTAAT-AGCTGTATCTTCATTCTCACTTTTAAGTAATTTCTTCTTAACCATTGTATAACACTACCACAGTTTGTATGGAGATAAA-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77846856 248 + 205426864 AGCTAA---TTTGTAATAGGTTTTTGAAGTGCAAATTACATGTTTCTGTTTAAATAATGACACTAAAATATGGACACTATCTA-TCACACTCTA-TATACACAACTAACTCCAACTTGTCTCTAGAAGAAAGGTTTAA-TTTTTCAGGTCTCGTCCAC-AAAATGAAGTGTTAATAAGCTGTATCTTTATTCTCACTTTTAAGTAATTTCTTCTTAACCATTGTATAACACTACTACAGTTTGTATGAAGATAAA-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            6486 249 +  12760026 AGCTAA---TTTGTAATAGGTTTTTGAAGTGCAAATTACATGTTTCTGTTTAAATAATGACAGTAAAATATGGACACTATCTATTCACACTCTA-TATACACAACTAACTCCAACTTGTCTCTAGAAGAAAGGTTTAA-TTTTTCAGGTCTCGTCCAC-AAAATGAAGTGTTAATAAGCTGTATCTTTATTCTCACTTTAAAGTAATTTCTTCTTAACCATTGTATAATACTACTACAGTTTGTATGGAGATAAA-
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42119620 239 -  86207423 AGCTAA---TTTGTAATAGGTTTTTGAAGTGCCAATTACATGTTTCTGTTTAAATAATGAGAGTAAAATATGGACACTAT----TCACACTCTA-TATACACAACTAACCCCAACTTGTCTCTAGAAGAAAGATTTAA-TTTTTCAGGTCTCATCCAC-AAAATGAAGAGTTAATAAGCTGTATCTTTATTCTCACTTT-AAGTGAT---TTTTTAACCACCGTATA--ACTACTACAGTTTGTTTAGAGATAAA-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204275028 250 - 204787373 AGCTAA---TTTGTAATAGATTTTTGAAGTGCAAATTACATGTTTCTGTTTAAATAATGAGAGTAAAATATGGACACTATCTATTCACACTCTA-TATACACAACTAACCCCAACTTGTCTCTAGAAGAAAGATTTAA-TTTTTCAGGTCTCATCCACAAAAATGAAGTGTTAATAAGCTGCATCTTTATTCTCACTTTTAAGTGATTTCTTTTTAACCATTGTATAACACTACTACAGTTTGTATGGGGATAAA-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    174253 249 - 192460366 AGCTAA---TTTGTAATAGATTTTTGAAGTGCAAATTACATGTTTCTGTTTAAATAATGAGAGTAAAATATGGACACTATCTATTCACACTCTA-TATACACAACTAACCCCAACTTGTCTCTAGAAGAAAGATTTAA-TTTTTCAGGTCTCATCCAC-AAAATGAAGTGTTAATAAGCTGCATCTTTATTCTCACTTTTAAGTGATTTCTTTTTAACCATTGTATAACACTACTACAGTTTGTATGGGGATAAA-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193721 249 -  11645122 AGCTAA---TTTGTAATAGATTTTTGAAGTGCAAATTACATGTTTCTGTTTAAATAATGAGAGTAAAATATGGACACTATCTATTCACACTCTA-TATACACAACTAACCCCAACTTGTCTCTAGGAGAAAGATTTAA-TTTTTCAGGTCTCATCCAC-AAAATGAAGTGTTAATAAGCTGCATCTTTATTCTCACTTTTAAGTGATTTCTTTTTAACCATTGTATAACACTACTACAGTTTGTATGGGGATAAA-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          178955 249 -   6739814 AGCTAA---TTTGTAACAGATTTTTGAAGTGCAAATTACATGTTTCTGTTTAAATAATGAGAGTAAAATATGGACACTATCTATTCACACTCTA-TATACACAACTAACCCCAACTTGTCTCTAGAAGAAAGGTTTAA-TTTTTCAGGTCTTATCCAC-AAAATGAAGTGTTAATAAGCTGCATCTTTATTCTCACTTTTAAGTGATTTCTTTTTAACCATTGTATAACACTACTACAGTTTGTATGGGGATAAA-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69567 249 - 101219884 AGCTAA---TTTGTAATAGATTTTTGAAGTGCAAATTACATGTTTCTGTTTAAATAATGAGAGTAAAATATGGACACTATCTATTCACACTCTA-TATACACAACTAACCCCAACTTGTCTCTAGAAGAAAGATTTAA-TTTTTCAGGTCTCATCCAC-AAAATGAAGTGTTAATAAGCTGTATCTTTAGTCTCACTTTTAAGTGACTTCTTTTTAACCGTTGTATAACACTACTACAGTTTGTGTGGAGATAAA-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          191133 249 -    785044 AGCTAA---TTTGTAACAGATTTTTGAAGTGCAAATTACATGTTTCTGTTTAAATAATGAGAGTAAAATATGGACACTATCTATTCACACTCTA-TATACACAACTAACCCCAACTTGTCTCTAGAAGAAAGGTTTAA-TTTTTCAGGTCTTATCCAC-AAAATGAAGTGTTAATAAGCTGCATCTTTATTCTCACTTTTAAGTGATTTCTTTTTAACCATTGTATAACACTACTACAGTTTGTATGGGGATAAA-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           81395 249 -  10971483 AGCTAA---TTTGTAATATATTTTTGAAGTGCAAATTACATAGTTCTGTTTAAATAATGAGAGTAAAATATGGACACTATCTATTCACACTCTA-TATACACAACTAACCCCAACTTGTCTCTAGAAGAAAGATTTAA-TTTTTCAGGTCTCATCCAC-AAAATGAAGTGTTAATAAGCTGTATCTTTATTCCCACTTTTAAGTGATTTCTTTTTAACCATTGTATAACACTACTACAGTTTGTATGGAGATAAA-
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10935893 238 -  13128814 AGCTAA---TTTATAATA-GGTTTTGAAGTGCAAATTACATGTTTCTGTT----TAATAAGAGTCAAATATGGACACTAT----TCATAGTCTA-TATGCACAACTAATCCCAACTTGTCTCTAGAAGAAAGATTTAATTTTTTCAGGTCTCATCCAC-AAAATGAAGTGTTAATACGCTATATCTTTATTTTTACTTTAAAGTGATTTATTTTTAACCATCGTATAAC---ACTACAGTTTGTGTGGAGATAGA-
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7666980 239 +  14377064 AGCTAA---TTTATAATAGGGTTTTGAAGTGGAAATTACATGTTTCTGTT----TAGTAAGAGTAAAATATGGACACTAT----TCATACTCTA-TATGCACAACTAATCCCAACTTGTCTCTAGAAGAAAGATTTAA-TTTTTCAGGTCTCATCCAC-AAAATGAGGTGTTAATAAGCTATATCTTTATTCTTACTTTAAAGTGATTT-TTTTTAACCATTGTATAAC-CTACTACACTTTTTGTGAAGATAGA-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4134703 241 -   9889416 AGCTAA---TTTATAATAGGTTTTTGAAGTGTAAATTACATGTTTCTGTT----TAATAAGAGTAAAATATGGACACTAT----TCATACTCTA-TATACACAACTAATCCCAACTTGTCTCTAGAAGAAAGATTTAA-TTTTTCAGGTCTCATCCAC-AAAATGAAGTGTTAATAAGCTATATCTTTATTCTTACTTTAAAGTGATTTCTTTTTAACCATTGTATAACACTACTACAGTTTGTGTGGAGATAGA-
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30885561 250 -  47401472 AGCTAA---TTTGTAATAGGATTTTGAAGTGCAAATTGTGTAATTCTGCTTAAATATTTAGAGTAAAATATGGACACTATCTATTCGCACTCTATAATACACAGCTAACACCACTTTGTCTCTAGAAGAAAGGTTTAA-TTTTGCAGGTCTCATCCAC-AAAATGAGGTGTTAATAAGCTATATCTTTATTCTCACTTTCAAGTGATTTCTTTTTAATCATAGTACAACACCACTATAGTTTGTGTGGAAATAAA-
i micMur3.chr31                C 0 I 66
s otoGar3.GL873528              20765066 242 +  38779656 AGCTAA---TTTGTAATAGGATTTTGAAGTGCAAATTACATATTTTTACTTAAATA-----ATTAAAGTATAGACACTATCTGTTCGCACTCCA-GATACACAGCTAACTCTACTTTGTCCCTAGAAGTAAAGTTTAA-TTTTGCAGGTATTATAAAC-ACAATGAGGTGTTAAT-AGTTACATTTTCATTCTCACTTTTAAGTGATTTCTTTTT-ATCATAGTACAACACCACTATGGTTTGTGTGAAATTTAA-
i otoGar3.GL873528             C 0 I 4
s mm10.chr16                    22712174 250 -  98207768 AGATGATTCTTTTTAATAAGA-TTTGAGGTGCAAATTACATACCTCTGTTTAAGTCATTAGAGTAAAATATGGACACTATCAATTCACACTCCT-CAAAAACAACTAACTCCACTTTGGCCCTATAA-TAAGGCTTAA-TGTTTCAGGTCTCATGTGG-AAAATGAGGTGTTAGTAAGTTGCAGATTTATTTTCACTTTTAAATCCTTCTGTTTTAAGTTTAATATAGCACTACTACATTTTGTTTGGAAATGAA-
i mm10.chr16                   C 0 I 3
s canFam3.chr31                 28797935 244 -  39895921 AGCTAA---TTTGTAATATGGCTTTGAAGTGCAAATTACACATTTCTCTTTAAGTA----GAGGAAAATATGGACACTGTCAATTTACACTCCA-TATACACAACTAACTTCATCTTGTTCCTA--AGAAAGGTTTAAATTTTGCAGGTCCAATTCAC-AAAATAAACTGCTAATAAGCTACATCTTTATTCCCATTTTAAAATGCTTTCTTTTTAATCATAGAACAATAGTACAACAGTTTGAATGGAAATAAA-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6696339 241 +   6883506 --ATAA---TAAATAATA-----TTGAAGTGCaaatt--attttttaatttaaataatCAAAGTAAAATATGCACACTATCAATTCACACTCCA-CAAACACAACAGACTCCAGTTTGTCCCAAGAAGAAAGGCTTAC-TTTTGCAAATCTCATCCAC-AAAATGAAGTGTAAATGAGCTGCATCTTTATTCTCATTTTTGAGTCATTTCTTTTTAATCGTAGTACAGCACTACTACAGTTTGTGTTGAAATAAAA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           91928 824 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=781766.000000
s hg38.chr14_GL000009v2_random    189532 71 +    201709 ATAACTCATGGTGAGAAATCCAGTTCTTTAAA-AAATCATTTTACCTTCAATCA--CTTTTAGGATGTCTATGG
s panTro5.chr9                  41879609 72 + 116767853 ATAACTCATGGTGAGAAATCCAGTTCTTTAAAGAAATCATTTTACCTTCAATCA--CTTTTAGGATATCTGTGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77847104 72 + 205426864 ATAACTCATGGTGAGAAATCCAGTTCTTTAAAGAAATCATTTTACCTTCAATCA--CTTTTAGGATATCTATGC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            6735 72 +  12760026 ATAACTCATGGTGAGAAATCCAGTTCTTTAAAGAAATCATTTTACCTTCAATCA--CTTTTAGGATATCTATGC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42119859 72 -  86207423 ATAACTCATGGTGAGAAATCCAGTTCTTGAAAGAAATCATTTTACCTTCAATCA--CATTTAGGATATCTATGC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204275278 72 - 204787373 ATAACTCATGGTGAGAAATCCAGTTCTTTAAAGAAATCATTTTACCTTCAATCA--CATTTAGGACATCTATGC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    174502 72 - 192460366 ATAACTCATGGTGAGAAATCCAGTTCTTTAAAGAAATCATTTTACCTTCAATCA--CATTTAGGACATCTATGC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          193970 72 -  11645122 ATAACTCATGGTGAGAAATCCAGTTCTTTAAAGAAATCATTTTACCTTCAATCA--CATTTAGTACATCTATGC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          179204 72 -   6739814 ATAACTCATGGTGAGAAATCCAGTTCTTTAAAGAAATCATTTTACCTTCAATCA--CATTTAGGACATCTATGC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69816 72 - 101219884 ATAACTCATGGTGAGAAATCCAGTTCTTTAAAGAAATCATTTTACCTTCAATCA--CATTTAGGACATCTATGC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          191382 72 -    785044 ATAACTCATGGTGAGAAATCCAGTTCTTTAAAGAAATCATTTTACCTTCAATCA--CATTTAGGACATCTATGC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           81644 72 -  10971483 ATAACTCATGGTGAGAAATCCAGTTCTTTAAAGAAATCATTTTACCTTCAATCA--CACTTAGGACATCTATGC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10936131 72 -  13128814 ATAACTCATGGTGAGAAATCCGGTTCTATAAGGAGATCATTTGACCTTCAGTCA--TATTCAGGATATTTATAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7667219 72 +  14377064 ATAACTCATGGTGAGAAATCCGGTTCCATAAAGAGATCATTTCACCTTCAATCA--TATTCAGGATATTTACGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4134944 72 -   9889416 ATAACTCACGGTGAGAAATCCAGTTCTATAAAGAGATCATTTGACCTTCAATCA--TATTCAGGATATTTATGC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20765312 70 +  38779656 ATATCTCATGGTGAGAAA--CACTTCCTTAAAGAGATAATTTTACCTTCAGTCA--CATTCAGAATATTCAGAA
i otoGar3.GL873528             I 4 I 9
s mm10.chr16                    22712427 70 -  98207768 ATGTCTCACATAGGGAAAGT--GTACCTCATGGAGAACATTATAACTTCAATCA--TATTCAATAAATTTGTGC
i mm10.chr16                   I 3 C 0
s canFam3.chr31                 28798179 71 -  39895921 --AACCTATTTCACAAAGTCAAGTTCTTTAAGGAGATCACTT-ACCTTCAGTCATCTGTTTAGGATATATATAC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6696580 67 +   6883506 ACAGTTCATGATCAAAA-----GTTCCTTATGGTGAGCTCTTTCCCTTCAGTCA--TATTCAAGATTTATCTGC
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30885811 66 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           91928 824 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=3039946.000000
s hg38.chr14_GL000009v2_random    189603 252 +    201709 TTTTAGAGTAAGGACGAAAATTTATAAACATTTGTTA----AATTATGCAACT-GTGTTTGAAGA--TGTTTCAAAATTAC----ATTTTCCTTATTTTACAACTAGTTTTCAT----GTATTCACAAACGAGACAC-----ATGAG------------AATTATTAATGCAAAAGC---------ACAGCATATCAACAAAGTTTATAATGTAAATAGTTTAGTTAGGAAAGAATGTAATGAGTGAATTATCAAAGCTATTTTATTGGTTCCTAGATTTACCACAGAAGAAA
s panTro5.chr9                  41879681 252 + 116767853 TTTTAGAGTAAGGATGAAAATTTATAAACATTTGTTA----AATTATGCAACT-GTCTTTGAAGA--TGTTTCAAAATTAC----ATTTTCCTTATTTTACAACTAGTTTTCAT----GTATTCACAAATGAGACAC-----ATGAG------------AATTATTAATGCAAAAGC---------ACAGCATATCAACAAAGTTTATAATGTAAATAGTTTAGTTAGGAAAGAATGTAATGAGTGAATTATCAAAGCTATTTTATTGGTTCCTAGATATACCATAGAAGAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77847176 252 + 205426864 TTTTAGAGTAAGGATGAAAATTTATAAACATTTGTTA----AATTATGCAACT-GTTTTTGAAGA--TGTTTCAAAATTAC----ATTTTCCTTATCGTACAACTAGTTTTCAC----GTATTCACAAATGAGACAC-----GCGAG------------AGTTATTAATGCAAAAGC---------ATAGCATATCAACAAAGTGTATAATGTAAATAATTTAGTTAGGAAAGAATGTAATGAGTGAATTATCAAAGCTATTTTATTGGTTCCTAGATTTACCATAGAAGAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            6807 252 +  12760026 TTTTAGAGTAAGGATGAAAATTTATAAACATTTGTTA----AATTATGCAACT-GTTTTTGAAGA--TGTTTCAAAATTAA----ATTTTCCTTATCGTACAACTAGTTTTCAC----GTATTCACAAATGAGACAC-----GTGAG------------AGTTATTAATGCAAAAGC---------ATAGCATATCAACAAAGTGTATAATGTAAATAATTTAGTTAGGAAAGAATGTAATGAGTGAAATATCAAAGCTATTTTATTGGTTCCTAGATTTACCATAGAAGAAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42119931 252 -  86207423 TTTTAGGGTAAGGATGAAAATTTATAAACATTTGTTA----AATTATGCAACT-GTTTTTGAAGA--TGTTTCAAAATTAC----ATTTTCCTTATTGTACAACTAGTTTTCAT----GTATTCACAAATGAGACAC-----ATAAG------------AATTATTAATGCAAAAGC---------ATAGCATATTGACAAAGTTTATAATGTAAATAGTTTAGTTAGGAAAGAATGTAATAAGTGAATTATCAAAGCTATTTTATTGTTCCCTAGATTTACCATAGAAGAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204275350 251 - 204787373 TTTTAGAGTAAGGATGAAAATTTATAAACATTTGTTA----AATTATGCAACT-GTTTTTGAAGA--TGTTTTGAAATTAC----ATTTTCCTTATTGTACAACTAGTTTTCAT----GTATTCACAAATGAGACAC-----ACGAG------------AATTATTAATG-AAAAGC---------ATAGCATATCGACAAAGTTTATAATGTAAATAGTTTCGTTTGGAAAGAATGTAATGAGTGAATTATCAAAGCTATTTTATTGGTTCCCAGATTTACCATAGAAGAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    174574 251 - 192460366 TTTTAGAGTAAGGATGAAAATTTATAAACATTTGTTA----AATTATGCAACT-GTTTTTGAAGA--TGTTTTGAAATTAC----ATTTTCCTTATTGTACAACTAGTTTTCAT----GTATTCACAAATGAGACAC-----ACGAG------------AATTATTAATG-AAAAGC---------ATAGCATATCGACAAAGTTTATAATGTAAATAGTTTCGTTTGGAAAGAATGTAATGAGTGAATTATCAAAGCTATTTTATTGGTTCCCAGATTTACCATAGAAGAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194042 251 -  11645122 TTTTAGAGTAAGGATGAAAATTTATAAACATTTGTTA----AATTATGCAACT-GTTTTTGAAGA--TGTTTTGAAATTAC----ATTTTCCTTATTGTACAACTAGTTTTCAT----GTATTCACAAGTGAGACAC-----ACGAG------------AATTATTAATG-AAAAGC---------ATAGCATATCGACAAAGTTTATAATGTAAATAGTTTCGTTTGGAAAGAATGTAATGAGTGAATTATCAAAGCTATTTTATTGGTTCCCAGATTTACCATAGAAGAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          179276 251 -   6739814 TTTTAGAGTAAGGATGAAAATTTATAAACATTTGTTA----AATTATGCAACT-GTTTTTGAAGA--TGTTTTGAAATTAC----ATTTTCCTTATTGTACAACTAGTTTTCAT----GTATTCACAAATGAGACAC-----ACGAG------------AATTATTAATG-AAAAGC---------ATAGCATATCGACAAAGTTTATAATGTAAATAGTTTCGTTTGGAAAGAATGTAATGAGTGAATTATCAAAGCTATTTTATTGGTTCCCAGATTTACCATAGAAGAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    69888 251 - 101219884 TTTTAGAGTAAGGATGAAAATTTATAAACATTTGTTA----AATTATGCAACT-GTTTTTGAAGA--TGTTTTGAAATTAC----ATTTTCCTTATTGTACAACTAGTTTTCAG----GTATTCACAAATGAGACAC-----ATGAG------------AATTATTAATG-AAAAGC---------ATAGCATATTGACAAAGTTTATAATGTAAATAGTTTCATTTGGAAAGAATGTAATGAGTGAATTATCAAAGCTATTTTATTGGTTCCCAGATTTACCATAGAAGAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          191454 248 -    785044 TTTTAGAGTAAG---GAAAATTTGTAAACATTTGTTA----AATTATGCAACT-GTTTTTGAAGA--TGTTTTGAAATTAC----ATTTTCCTTATTGTACAACTAGTTTTCAT----GTATTCACAAATGAGACAC-----ACAAG------------AATTATTAATG-AAAAGC---------ATAGCATATCGACAAAGTTTATAATGTAAATAGTTTCATTTGGAAAGAATGGAATGAGTGAATTATCAAAGCTATTTTATTGGTTCCCAGATTTACCATAGAAGAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           81716 250 -  10971483 TTTTAGAGTAAGGATGAAAATTTA-AAACATTTGTTA----AATTATGCAACT-GTTTTTGAGGA--TGTTTTGAAATTAC----ATTTTCCTTATTGTACAGATAGTTTTCAT----GTATTCACAAATGAGACAC-----ACGAG------------AATTATTAATG-AAAAGC---------ATAGCATATCGACAAAGTTTATAATGTAAATAGTTTCATTTGGAAAGAATGTAATGAGTGAATTATCAAAGCTATTTTATTGGTTCCCAGATTTACCATAGAAGAAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10936203 241 -  13128814 TTTTACACTAAGGATGAAAAGTTATAAACATTTGTTA----AATTATGCAGCTGTTTCTTTAAGA--TGTTTCAAAATTAC----ATTTACCTTATTATACAACTATTTTTCAT----GTATTCACAAATGAGATAC-----ATGAG------------AATTATTAAGGCAAAAGC---------ATAGCATCTTGACAAAGTTTAT------AATAGTTT-----TGGAAGAAGGTAATGAGTGAATTATCAGAAGTATTTTATTGGTTCTTGGATTTACTATAGAAG-AA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7667291 246 +  14377064 TTTTACACTAAGGATGAAAAGCTATCAACATTTGTTA----AATTATGCAGCTGTTTTTTTAAGA--TGTTTCAAAATTAC----ATTTACCTTATTATACAACTATTTTTCAT----GTATTCACAAATGAGATAC-----ATGAG------------AATTATTAATGCAAAAGC---------ATAGCATCTTGACAAAGTTTATAATATAAATAGTTT-----AGGAAGAAGGTAATGAGTGAATTATCA-AAGGATTTTATTGGTTCCTGGATTTACTATAGAAG-AA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135016 246 -   9889416 TTTTACACTAAGGATGAAAAGTTATAAACATTTGTTA----AATTATGCAACT-TTTTTTTAAGA--TGTTTCGAAATTAC----ATTTACCTTATTATACAACTATTTTTCAT----GTATTCACAAATGAGATAT-----GTGAG------------AATTATTAATGCAAAAGC---------ATAGCATCTTGACAAAGTTTATAATATAAATAGTTT-----GGGAAGAAGGTAATGAGTGAATTATCAAAAATATTTTATTGGTTCCTGGATTTACTATAGAAG-AA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30885877 252 -  47401472 TTTTACAGTAAGGACAGAAATTCATAAACAATTGTTA----AATTATGTAGCC-CTCCTTGGAGA--TGTTTCTAAATTAC----ATTTTCCTTGTTATATAGCTAGTTTTCAT----GCATTCACAAATGAGATAC-----AGTCT------------AATTATTAATTCAAAAGC---------ATAGTATATCAATAAAGTTTATAATATAAGTAGTTTACTTTGGAAAGAATGTGCTGAATGAGTTATCAAAGCAATTTTATTGGTTCCTAGATTTACCATAGAAGAAA
i micMur3.chr31                I 66 I 216
s otoGar3.GL873528              20765391 247 +  38779656 ATTTAGAGTAAGGACAGAAATTTATAAACAATTGTTAAATTAATTATGCAGCC-CTCCTTGAAGA--TATCTCTAAAGTAC----TTTTCTCTTGTTACATAGCTAGTATTCAT----GCATTCACAAATGAGACAC-----------------------ATGATTAATCCAAAAGC---------TTAGCATATCAATAAAGTGCATAATACAAATAGTTTAGTTTGGAAAGAATGTACTGAATGAGTTATTAA--CAATTTTATTGGTTCCCAGATTTAGTACAGAAGAA-
i otoGar3.GL873528             I 9 C 0
s mm10.chr16                    22712497 273 -  98207768 TTTCAAAGTAGGGACAGAAACTCACAATCACTTATCA----AACCATGCTGCC-CTCTTTGAAGT--TGTCTTCATAGTACGTGGATGTCCCTCATTACACAGC-AGTTTTCACTCAAGTATTGTAAAATGAAATAA-----AAGTATTATAAATTTGCAATTATTAACAACAAAACATGTAACATATAATATGTTAATATA-TGTATAATATAATATGTCTAGTTTGTAAAGAATAT-----GTAAAGAATTGTGGTGATTTTATTGGGTTTTGGATTTACCATAGAAGAA-
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28798250 250 -  39895921 TTTTACAGTAGGGACAGTAATTCATAAACATTTGTTA----AATTATGTAACC-CTCCTTTATGA--TGTCTCCAAATCAC----ATTTCCCTTGTTATACAGTTAGTTTTCAT----GTATTCACAATTAAGACGCTATGCTTTTG------------CATTAATAATT-----AT---------AATGTATGTCTATAAAATTAAGAATATAAATAGCTTCACTTGGAAAGAAGATACTGAATGAATTATCAAAGCAATTTTATTGGTTCCCAGATTT-TCAGAGAAGAA-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6696647 251 +   6883506 TTTTACAGTAGGGAGAGAAATTCATAAGCTCTTGTTA----AATTATACAGCC-CTCCTTGAAGATTTGTCTCTAAGTTAC----ACTTCCCTTGTTATACAGCTAGTTTTCAT----GTATTCACAAAGGAGTCAT-----ATTA-------------AATTATTAATGCAAAAGA---------ATAGAATATCTATAAAGTTTATAATATAAATAGTTTAGTT-GGGAAGAATGTGCTGAATGAATAATCAAAACAATTTTATTGTTTCCCAGATTTACCATAGAAGAA-
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           91928 824 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=995115.000000
s hg38.chr14_GL000009v2_random    189855 88 +    201709 ATAAAACAGGCTTTTAAAAATTTCTCAGCAC-TGAGACCATTTAAGGTCTATTTTGTATGC-CG-T-AAGTTCT-AAAAAATGTTATTGCTGG
s panTro5.chr9                  41879933 88 + 116767853 ATAAAGCACCCTTATAAAAATTTCTCAGCAC-TGAGTCCATTTAAGGTCTATTTTGTATGC-CG-T-AAGTTCT-ACAAAATGTTATTGCTGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77847428 88 + 205426864 ATAACGCACCCTTATAAAAATTTCTCAGCGC-TGAGTCCTTTTAAGGTCTATTTTGTATGC-CA-T-AAGTTCT-AAAAAATATTATTGCTGG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7059 88 +  12760026 ATAACGCACCCTTATAAAAATTTCTCAGCGC-TGAGTCCATTTAAGGTCTATTTTGTATGC-CA-T-AAGTTCT-AAAAAATGTTATTGCTGG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120183 88 -  86207423 ATGAAGCACCCTTATAAAAATTTCTCAGCAC-TGAGTCCATTTAAGGTCTATTTTGTATGC-CG-T-AAGCTCT-AAAAAATATTATTGCCAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204275601 88 - 204787373 ACAAAGCACCCTTATACAAATTTCTCAGCCC-TGAGTCCATTTAAGGTCTATTTTGTATGC-CG-T-AAGTTCT-AAAAAATGTTATTGCTGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    174825 88 - 192460366 ACAAAGCACCCTTATACAAATTTCTCAGCCC-TGAGTCCATTTAAGGTCTATTTTGTATGC-CG-T-AAGTTCT-AAAAAATGTTATTGCCGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194293 88 -  11645122 ACAAAGCACCCTTATACAAATTTCTCAGCCC-TGAGTCCATTTAAGGTCTATTTTGTATGC-CG-T-AAGTTCT-AAAAAATGTTATTGCCGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          179527 88 -   6739814 ACAAAGCATCCTTATACAAATTTCTCAGCAC-TGAGTCCATTTAAGGTCTATTTTGTATGC-CG-T-AAGTTCT-AAAAAGTGTTATTGCCGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70139 88 - 101219884 ACAAAGCACCCTTATACAAATTTCTCAGCAC-TGAGTCCATTTAAGGTCTATTTTTTATGC-CG-T-AAGTTCT-AAAAAATGTTATTGCCGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          191702 88 -    785044 ACAAAGCATCCTTATACAAATTTCTCAGCAC-TGAGTCCATTTAAGGTCTATTTTGTATGC-CG-T-AAGTTCT-GAAAAGTGTTATTGCCGA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           81966 89 -  10971483 ACAAAGCACCCTTATGCAAATTTCTCCGCAC-TGAGTCCATTTAAGGTCTATTTTGTATGC-CGTT-AAGTTCT-AAAAAATGTTATTGCTGA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10936444 89 -  13128814 ATAAAGCAACCTTATAAAAATTTCTCAGCAC-TGAGTCCATTTAAGGTCTATTCGGTATGC-CC-TGAAGTTCT-AAAAAATGTTATTGCTGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7667537 89 +  14377064 ATAAAGCACCCTTATAAAAATTTCTCAGCAC-TGAGTCAATTTAAGGTCTATTCTGTATGC-CC-TGAATTTCT-AAAAAATGTTATTGCTCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135262 90 -   9889416 ATAAAGCACCCTTATAAAAATTTCTCAGCAC-TGAGTCCATTTAAGGTCTATTCTGTATGC-CC-TGAAGTTCTAAAAAAATGTTATTGCTGA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20765638 88 +  38779656 ATAAAACACCCTTACGAAAATTTCCCAGCAC-TAAGTCCATTTAAGATCTATTTCACAAGC-CT-TTAAGGTCT--TCAAATGTTATTGCCAG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22712770 88 -  98207768 ATAAAACTCCATTATGAGAACTTCCTAGCAT-CAAGTTCATTTAAGATCTGTTTTACATGCTCA-T-AACTTCT--TCAAATGTTAACACCAG
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28798500 88 -  39895921 ATAAAATATGCTTATGAAAATTTCCCAGCAC-TAAGTCCATTTAAGGTCTATTTCACATGC-CC-TTAAGTTCT--TCAGATGTTACTGCCAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6696898 88 +   6883506 TTAAAAAGCCCTTATGAAAATTTCCCAGCACTTAAGTCCATTTAAAGTCTATTTTATGTGC-CT-T-AAGTTTT--TCAAATGTTATTGCCAG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30886129 216 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           91928 824 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I

a score=981739.000000
s hg38.chr14_GL000009v2_random    189943 133 +    201709 TAAAAATAGGATGCCT--------------ATCTAAAATTGTCTTTTTAAAGGTTCTCTCTTATTC-TTCTTCCCTTCCTATGTGTGCATAGAATACTGTCATCGTCTTGATTGGAACACTGTCTCTCTTTCTC---AGAGGGTGTACATT
s panTro5.chr9                  41880021 133 + 116767853 TAAAAATAGGGTGCCT--------------ATCTAAAGTTGTCTTTTTAAAGGTTCTCTCTTATTC-TTCTTCCCTTCCTATGTGTGCACAGAATACTGTCATCGTCTTGATTGGAACACTGTCTCTCTTTCTC---AGAGGGTATACATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77847516 133 + 205426864 TAAAAATAGAGTGCCT--------------ATCTAAAATTGTCTTTTTAAAGGTTCTCTCTTATTC-TTCTTCCCTTCCTATGTGTGCACAGAATACTATCATTGTCTTGATTGGAACACTGTCTGTCTTTCTC---AGAGGGTGTACAGT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7147 133 +  12760026 TAAAAATAGAGTGCCT--------------ATCTAAAATTGTCTTTTTAAAGGTTCTCTCTTATTC-TTCTTCCCTTCCTATGTGTGCACAGAATACTGTCATTGTCTTGATTGGAACACTGTCTGTCTTTCTC---AGAGGGTGTACAGT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120271 147 -  86207423 TAAAAATAGAGTGCCTGATAATAAAACACAATCTAAAATTGTCTTTTTAAAGGTTCACTCTTACTC-TTCTTCACTTCCTATGTGTGCACAGAATACTGTCACTGTCTTGATTGGAACACTGTCTCTCTGTCTC---AGAGGGTGTACAGT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204275689 147 - 204787373 TAAAAATAGAGTGCCTGATAATAAAACACAACCTAAAATTGTCTTTTTAAAGATTCTCTCTTCTTC-TTCTTCCCTTCCTATGTGCGCACAGAATATTGTAATCGTCTTGACTGCAACACCGTCTCTCTGTCTC---AGAGGGTGTACGGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    174913 147 - 192460366 TAAAAATAGAGTGCCTGATAATAAAACACAACCTAAAATTGTCTTTTTAAAGATTCTCTCTTCTTC-TTCTTCCCTTCCTATGTGCGCACAGAATATTGTAATCGTCTTGACTGCAACACCGTCTCTCTGTCTC---AGAGGGTGTACGGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194381 147 -  11645122 TAAAAATAGAGTGCCTGATAATAAAACACAACCTAAAATTGTCTTTTTAAAGATTCTCTCTTCTTC-TTCTTCCCTTCCTATGTGCGCACAGAATATTGTAATCGTCTTGACTGCAACACCGTCTCTCTGTCTC---AGAGGGTGTACAGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          179615 147 -   6739814 TAAAAATAGAGTGCCTGATAATAAAACACAATCTAAAATTGTCTTTTTAAAGcttctctcttcttc-ttcttcCCTTCCTATGTGTGCACAGAATATTGTAATCGTCTTGATTGCAACACTGTCTCTCTGTCTC---AGAGGGTGTACAGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70227 147 - 101219884 TAAAAATAGAGTGCCTGATAATAAAACACAATCTAAAATTGTCTTTTTAAAGGTTCTCTCTTCTTC-TTCTTCCCTTCCTATGTGTGCACAGAATATTGTCATTGTCTTGATTGCAACACTGTCTCTCTGTCTC---AGAGGGTGTACAGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          191790 147 -    785044 TAAAAATAGAGTGCCTGATAATAAAACACAATCTAAAATTGTCTTTTTAACGcttctctcttcttc-ttcttcCCTTCCTATGTGTGCACAGAATATTGTAATCGTCTTGATTGCAACACTGTCTCTCTGTCTC---AGAGGGTGTACAGT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10936533 120 -  13128814 TAAAAAGAGAGTGCCTGATAATAA------------------------AAGCATTCTCTCATA----TTCTTCCCTCCCTATGTGTGCACAGAGTACTGTCATCCTCTTGATCGGAATACTGTCTCTCTGTCTC---AGAGTGTGTATAGT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7667626 100 +  14377064 TAAAAAGAGAGTGCCTGATAATAA------------------------AACCATTCTCTCATATTC-TTCTTCCTTCCCTATGTGTGCACAGAG-----------------------TACTGTCTCTCTGTCTC---AGAGTGTGTATAGT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135352 123 -   9889416 TAAAAAGAGAGTGCCTGATAATAA------------------------AACCATTCTCTCATATTC-TTCTTCCCTCCCTATGTGTGCACAGAGTACTATCATCGTCTTGATCGGAATACTGTCTCTCTGTCTC---AGAGTGTGTATAGT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20765726 123 +  38779656 TAAAAAGAAAGCACCTGATAA---------ACC----------------ATTCTCCTCTCATATTCTTTCTCCTCCCCTTAGCTGCTCACAGAATATTGTCCCCATCTTAATAGGAACACTGTCTTTCCATCTC---AGAGTTTTTGTAGA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22712858 119 -  98207768 TTAAAAGAGAAATC--GATAATAAGGT----------------------ACTCTGCTCTCATTTTC-TTCTTTCCTTCTTGTGTGCACCCTGAACCATACCCCTAGTTTTCTTCAAACA----CTCTTTATCCC---ATAGACTAGAAACT
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28798588 111 -  39895921 TAAAAGGAGAGCACCTGATAATAA------------------------AACAATTCTCTCACATTC-TTCTTGTCTCAC--------------ATGCTGTCTCCATCCTGGTAGGAACACTGTCTCTCTGTCTCCTTAGTTTGTGTG-AGT
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6696986 124 +   6883506 ---TAATAGAGCACCTGATAGTAAA-----------------------ACTATTTCTCTTCTCTTA-AGTTCTTCCTCTTATGTATGCACAGAATGCTGTCTCTATCCGAGTCGGGACATTGTCTCCCCATTTCCTTAAAGTCTATGTGGT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30886129 216 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           91928 824 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055   0 -  10971483 C

a score=421124.000000
s hg38.chr14_GL000009v2_random    190076 41 +    201709 TGTAGAA--GGGAGAAAATATTTGTTAA-TTTTGCTTCCTATAA
s panTro5.chr9                  41880154 41 + 116767853 TGTAGAA--GGGAGAAAATATTTGTTAA-TTTTGCTTCCTATAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77847649 41 + 205426864 TGTAAAA--GGGAGAAAATATTTGTTAA-TTTTGCTTCTTATAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7280 41 +  12760026 TGTAGAA--GGGAGAAAATATTTGTTAA-TTTTGCTTCCTATAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120418 41 -  86207423 TGTAGAA--GGGAGAAAATATTTGTTCA-TTTTGCTTCCTGTAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204275836 41 - 204787373 TGTAGAA--GGGAGAAAATATTTGTTAA-TTTTGCTTCCTATAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175060 41 - 192460366 TGTAGAA--GGGAGAACATATTTGTTAA-TTTTGCTTCCTATAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194528 41 -  11645122 TGTAGAA--GGGAGAAAATATTTGTTAA-TTTTGCTTCCTATAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          179762 41 -   6739814 TGTAGAA--GGGAGAAAATATTGGTTAA-TTTTGCTTCCTATAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70374 41 - 101219884 TGTAGAA--GGGAGAAAATATTTGTTAA-TTTTGCTTCCATTAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          191937 41 -    785044 CGTAGAA--GGGAGAAAATATTTGTTAA-TTTTGCTTCCTATAA
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10936653 40 -  13128814 TGTAGAA---TGATAAAATATTTGTTAA-TTTTGCTTCCTATAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7667726 40 +  14377064 TGTAGAA---TGATAAAATATTTGTTAA-TTTTGCTTCCTATAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135475 40 -   9889416 TGTAGAA---AGATAAAATATTTGTTAA-TTTTGCTTCCTGTAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30886345 41 -  47401472 TGTGGAA--GGAAGAAAATGTTTGTTAA-TTTTGCCTCCTATAA
i micMur3.chr31                I 216 C 0
s otoGar3.GL873528              20765849 42 +  38779656 TGTGGAA--AGAAGAAAATGTTTGTTGATTTTTGCTTCCTATAA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22712978 40 -  98207768 TACTGGAGTGGAGGGAGATGTTTAT----TTTTATTGTCTACAA
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 28798700 28 -  39895921 -------TGAGGAGAAAAT----GTTAA-TTTTGCTTCCT----
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6697110 40 +   6883506 -GCAGAA-AGGGAGAAAATACTTGTTAA--TTTGTTTCCTATAA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           91928 824 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C

a score=482604.000000
s hg38.chr14_GL000009v2_random    190117 42 +    201709 GATAAGGTCTCAATGGTTGAAGGTCAGTTAACAAAC-TTTTTT
s panTro5.chr9                  41880195 43 + 116767853 GATAAGGTCTCAATGGTTGAAAGTAAGTTAACAAACATTTTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77847690 42 + 205426864 CATAAGGTCTCAATGGTTGAAGGTCAGTTAACAAAC-TTTTTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7321 42 +  12760026 GATAAGGTCTCAATGGTTGAAGGTCAGTTAACAAAC-TTTTTG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120459 36 -  86207423 GGTAAGGTCTCAGTGGTTGAAGGCCAATTAACAAAT-------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204275877 42 - 204787373 GGTAAGGTCTCAATGGTTGAAGGTCAGTTAACAAAC-TTTTTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175101 42 - 192460366 GGTAAGGTCTCAACGGTTGAAGGTCAGTTAACAAAC-TTTTTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194569 42 -  11645122 GGTAAGGTCTCAACGGTTGAAGGTCAGTTAACAAAC-TTTTTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          179803 42 -   6739814 GGTAAGGTCTCAACGGTTGAAGGTCAGTTAACAAAC-TTTTTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70415 42 - 101219884 GGTAAGGTCTCAACGGTTGAAGGTCACTTAACAAAC-TTTTTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          191978 42 -    785044 GGTAAGGTCTCAACGGTTGAAGGTCAGTTAACAAAC-TTTTTG
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10936693 42 -  13128814 GGTAAGGTCTCAATGGTTGAAGGTCAGTTAATAAAC-TTTTTG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7667766 42 +  14377064 GGTAAGGTCTCAATGGTTGAAGGTCAGTTAACAAAC-TTTTTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135515 42 -   9889416 GGTAAGGTCTCAATGGTTGAAGGTCAGTTAACAAAC-TTTTTG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30886386 40 -  47401472 GGTAAGATCTCAATGTTTGAAGGACAGCTAACAAAC-TCTA--
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           92752 24 +   1229009 AGTAAAGT----------------CAGTTAACAAAC-TCCA--
i eulFla1.LGHW01000695v1       I 824 I 466
s otoGar3.GL873528              20765891 40 +  38779656 GATAAAGTCTCAATGTTTGAAGGTCAGTCAGCAAAC-TTCA--
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22713018 42 -  98207768 TCTAAGGTCTCAATAGTTGAAGTTCACTCAGCAGAC-TTTTCA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28798728 41 -  39895921 -ATAAATTCTCAATAATTGAAGGTCCATCAACAAAC-TTTTAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6697150 42 +   6883506 GGTAAGGACTCAATGGTTGAAGGTCATTCAACAAAC-TCCTTT
i dasNov3.JH568778             C 0 I 12
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C

a score=558671.000000
s hg38.chr14_GL000009v2_random    190159 54 +    201709 TTTGTCTTCATACTATTATCTTGGAATTACCAACTGGCTTCTACTTAGATTTTG
s panTro5.chr9                  41880238 54 + 116767853 TTTGTCTTCATACTATTATCTTGGAATTACCAACTGGCTTCTACTTAGATTTTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77847732 54 + 205426864 TTTGTCTTCATACTATTATTTTGGAATTACCAACTGGCTTCTATTTAGATTTTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7363 54 +  12760026 TTTGTCTTCATACTATTATTTTGGAATTACCAACTAGCTTCTATTTAGATTTTG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120495 54 -  86207423 TTTGTCTTCATACTACTATCTTGGAATTACTAACTGGCTTCTATTTAGATTTTG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204275919 54 - 204787373 TTTGTCTTCATACTACTATCTTGGAATTACCAACTGCCTTCTATTTAGATTTTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175143 54 - 192460366 TTTGTCTTCATACTACTATCTTGGAATTACCAACTGCCTTCTATTTAGATTTTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194611 54 -  11645122 TTTGTCTTCATACTACTATCTTGGAATTACCAACTGCCTTCTATTTAGATTTTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          179845 54 -   6739814 TTTGTCTTCATACTACTATCTTGGAATTACCAACTGCCTTCTATTTAAATTTTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70457 54 - 101219884 TTTGTCTTCATACTACTATCTTGGAATTACCCACTGCCTTCTATTTAGATTTTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192020 54 -    785044 TTTGTCTTCATACTACTATCTTGGAATTACCAACTGCCTTCTATTTAAATTTTC
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10936735 54 -  13128814 TTTGTCTTCATACTACTGTCTTGGAATCACCAACTGGCTTCTATTTAGATTGTG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7667808 54 +  14377064 TTTGTCTTCATACTACTGTCTTGGAATTACCAACTGGCTCCTATTTAGATTTTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135557 54 -   9889416 TTTGTCTTCATGCTACTGTCTTGGAATTACCAACTGGCTTCTATTCAGATTTTG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30886426 54 -  47401472 TTTATCTTTATACTAATATCTTGGAATTCCCAGATGATATCTATTTAGATTTTG
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20765931 54 +  38779656 TTTATCTTTATACTAATATCTTGGAATTGCCAGCTGGCATCTATTTAGATTTCG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22713060 41 -  98207768 TTTATCTCTCTTTTTTTTTC-------------CTTCTTTGGAGATGGATTGAG
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28798769 49 -  39895921 -----TTTCATACTAATGTTTTACAGTTGCCAAATGGTTTCTATTCAgatgttg
i canFam3.chr31                C 0 I 836
s dasNov3.JH568778               6697204 40 +   6883506 TTTACCTTCATGCTGATGTCTTTGA-TTGCCACCTAGCTTC-------------
i dasNov3.JH568778             I 12 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           92776 466 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C

a score=275746.000000
s hg38.chr14_GL000009v2_random    190213 30 +    201709 AAT-AATGAaagaaaagaac----------------tagc-atttgt--------------t
s panTro5.chr9                  41880292 30 + 116767853 AAT-AATGAaagaaaagaac----------------tagc-atttgt--------------t
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77847786 30 + 205426864 AAT-AATGAaagaaaagaac----------------tagc-atttgt--------------t
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7417 30 +  12760026 AAT-AATGAaagaaaagaac----------------tagc-atttgt--------------t
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120549 30 -  86207423 AAA-AATGAaagaaaagaac----------------tggc-atttgt--------------t
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204275973 30 - 204787373 AAT-AATGAaagaaaagaac----------------tagc-gtttgt--------------t
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175197 30 - 192460366 AAT-AATGAaagaaaagaac----------------tagc-gtttgt--------------t
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194665 30 -  11645122 AAT-AATGAaagaaaagaac----------------tagc-gtttgt--------------t
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          179899 30 -   6739814 AAT-AATGAaagaaaagaac----------------tagc-atttgt--------------t
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70511 30 - 101219884 AAT-AATGAaagaaaagaac----------------tagc-gtttgt--------------t
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192074 30 -    785044 AAT-AATGAaagaaaagaac----------------tagc-gtttgt--------------t
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10936789 30 -  13128814 AAT-AATGAaagaaaagagc----------------tagc-ataggt--------------t
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7667862 30 +  14377064 AAT-AATGAaagaaaagaac----------------tagc-ataggt--------------t
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135611 30 -   9889416 AAT-AATGAaagaaaagaag----------------tagc-ataggt--------------t
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30886480 30 -  47401472 AAT-TATAAaagaagatagc----------------taac-atttgt--------------t
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20765985 29 +  38779656 AAT-TATAAAAG-CGATagc----------------taac-atttgt--------------t
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22713101 46 -  98207768 AGTGAATCAGAACCacagag----------------tatcgatttgtagcctaagctagcct
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28799654 30 -  39895921 AAT-CATAAAAGAAGAAAGC----------------TAAC-ATTTAT--------------A
i canFam3.chr31                I 836 C 0
s dasNov3.JH568778               6697244 45 +   6883506 -AT-AATGATTGAAAAGGTCCCATAAATTATAATGATAAC-ATTTCT--------------T
i dasNov3.JH568778             C 0 I 96
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           92776 466 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C

a score=326823.000000
s hg38.chr14_GL000009v2_random    190243 30 +    201709 ggaacttactgtgt-----------tccagaaactt-tattg
s panTro5.chr9                  41880322 30 + 116767853 agaacttactgtgt-----------tccagaaactt-tattg
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77847816 30 + 205426864 agaacttactgggt-----------tccaaaaactt-tattg
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7447 30 +  12760026 agaacttactgggt-----------tccagaaactt-tattg
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120579 30 -  86207423 agaacttactgtgt-----------tccagaaactt-tattg
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276003 30 - 204787373 agaacttactgtgt-----------tccagaaactt-tattg
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175227 30 - 192460366 agaacttactgtgt-----------tccagaaactt-tattg
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194695 30 -  11645122 agaacttactgtgt-----------tccagaaactt-tattg
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          179929 30 -   6739814 agaacttactgtgt-----------tccagaaactt-tattg
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70541 30 - 101219884 agaacttactgtgt-----------tccagaaactt-tattg
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192104 30 -    785044 agaacttactgtgt-----------tccagaaactt-tattg
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10936819 30 -  13128814 agaactttctgtgt-----------tccagaaactt-tattg
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7667892 30 +  14377064 agaactttctgtgt-----------tccagaaactt-tatta
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135641 30 -   9889416 agaactttctgtgt-----------tccagaaactt-tattg
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30886510 30 -  47401472 aggactgactatgt-----------tccaggaactt-tattg
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20766014 30 +  38779656 ggggctgactgtgt-----------tccaggaactt-tactg
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22713147 42 -  98207768 ggaactttctgtatagatcaggctatactgcagcttccattg
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28799684 30 -  39895921 AAAATTGACTATGT-----------CCCAGAAATTA-TACTG
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           92776 466 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6697289 96 +   6883506 I

a score=466036.000000
s hg38.chr14_GL000009v2_random    190273 53 +    201709 atgccatttcttctcattatcacattc----attctttcaattagt----------attattttttt-
s panTro5.chr9                  41880352 53 + 116767853 ataccatttcttctcattatcacattc----attctttcaattagt----------attattttttt-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77847846 52 + 205426864 ataccatttcttctcattatcacattc----attctttcaattagt----------att-ttttttt-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7477 52 +  12760026 ataccatttcttctcattatcacattc----attctttcaattagt----------att-ttttttt-
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120609 52 -  86207423 ataccatttcttctcattatcacattc----attctttcaattagt----------att-atttttt-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276033 52 - 204787373 attccatttcttctcattatcacattc----attctttcaattagt----------act-atttttt-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175257 52 - 192460366 attccatttcttctcattatcacattc----actcgttcaattagt----------act-atttttt-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194725 52 -  11645122 attccatttcttctcattatcacattc----actcgttcaattagt----------act-atttttt-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          179959 52 -   6739814 attccatgtcttctcattatcacattc----attctttcaattagt----------att-atttttt-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70571 52 - 101219884 attccatttcttctcattatcacattc----attctttcaattagt----------att-atttttt-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192134 52 -    785044 attccatttcttctcattatcacattc----attctttcaattagt----------att-atttttt-
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10936849 52 -  13128814 atacaatttcttctcataatcacaatc----attcttccaattagt----------agt-atttttt-
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7667922 52 +  14377064 atacaatttcttctcataatcacaatc----attcttccaattagt----------att-atttttt-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135671 52 -   9889416 atacaatttcttgtcattatcagaatc----attcttccaattagt----------att-atttttt-
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30886540 52 -  47401472 ataccatttcttttaattatcacacct----attcttctaattaat----------att-atttttt-
i micMur3.chr31                C 0 I 366
s otoGar3.GL873528              20766044 46 +  38779656 atagcatgtcttttaattatcaca----------cttccaattaat----------gtt-atttttc-
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22713189 66 -  98207768 atccttctgcctgtgaatgccagatgctgagatttcagacatgagctaaacgcttggct-AATTTTC-
i mm10.chr16                   C 0 I 2
s canFam3.chr31                 28799714 52 -  39895921 ATAATATTTTTTCTAATTATCACACTC----ATTTTTCTAACTAAT----------GTA-TTTGTTT-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6697385 52 +   6883506 atactatttcttgtaatt-tctcaCAC----TGTTCTTCAAATTgt----------att-atcgttgt
i dasNov3.JH568778             I 96 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           92776 466 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C

a score=1628148.000000
s hg38.chr14_GL000009v2_random    190326 196 +    201709 ccatcttaatgaggtgggaccagaggttttgtaatatccactaatccac-----tgtggatttcatggattgcaagaggaagaaagcatggtggaactcaggtttctctga-ttccaaattcacatccttt---cA-TGTCTCCATGAAAAATAGAAAAGATA--AATTGGGCTC---TATTCTAACAAGAGAAACACAATTTTCCGTCAG
s panTro5.chr9                  41880405 196 + 116767853 ccatcttaataaggtgggacgagaggttttgtaatatccactcacccac-----tgtggatttcatggcttgcaagaggaagaaagcatggtggaactcaggtttctctga-ttccaaattcacatccttt---cA-TGTCTCCATGAAAAATAGAAAAGATA--AATTGGGCTC---TATTCTAACAAGAGAAACACAATTTTCCGTCAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77847898 196 + 205426864 ccgtcttaagaaggtgggaccagaggctttgtaatgtccactaacccac-----tgtggatttcatggcttgcaagaggaagaaagcatggtggaactcaggtttgtctga-ttccaaattcacatgcttt---CA-TGTCTCCATGAAAAATAGAAAAGATA--AATTGGGCTC---TGTTCTACCAAGAGAAACACAATTTTCCATCAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7529 196 +  12760026 ccgtcttaagaaggtggaaccagaggctttgtaatgtccactaacccac-----tgtggatttcatggcttgcaagaggaagaaagcatggtggaactcaggtttgtctga-ttccaaatgcacatccttt---CA-TGTCTCCATGAAAAATAGAAAAGATA--AATTGGGCTC---TATTCTAACAAGAGAAACACAATTTTCCATCAG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120661 196 -  86207423 ccatcttaagaaggtgggaccagaggttttgtaatgtccactaacccac-----tgtggatttcatggcttgcaagaagaagaaagcgtggtggaactcaggtttgtctga-ttccaaattcacatccttt---cA-TGTCTCCATGAAAGATAGAAAAGATA--AATTGGGCTC---TATTCTAACAAGAGAAACACAATTTTCCATCAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276085 195 - 204787373 ccatctcaagaaggtgggaccagaggctttgtaatgttcaccaacccac-----tgcagatttcatggcttgcaagaggaagaaaccatggtggaactca-gtttgtctga-ttccaaattcacattcttt---cA-TGTTTCCATGAAAAATAGAAAAGATA--AATTGGGCTC---TATTCTAACAAGAGAAACATAATTTTCCATCAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175309 195 - 192460366 ccatctcaagaaggtgggaccagaggctttgtaatgttcaccaacccac-----tgcagatttcatggcttgcaagaggaagaaaccatggtggaactca-gtttgtctga-ttccaaattcacattcttt---cA-TGTTTCCATGAAAAATAGAAAAGATA--AACTGGGCTC---TATTCTAACAAGAGAAACATAATTTTCCATCAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194777 195 -  11645122 ccatctcaagaaggcgggaccagaggctttgtaatgttcaccaacccac-----tgcagatttcatggcttgcaagaggaagaaaccatggtggaactca-gtttgtctga-ttccaaattcacattcttt---cA-TGTTTCCATGAAAAATAGAAAAGATA--AATTGGGCTC---TATTCTAACAAGAGAAACATAATTTTCCATCAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180011 195 -   6739814 ccatctcaagaaggtgggaccagaggctttgtaatgttcaccaacccac-----tgtagatttcatggcttgcaagaggaagaaaccatggtggaactca-gtttgtctga-ttccaaattcacattcttt---cA-TGTTTCCATGAAAAATAGAAAAGATA--AATTGGGCTC---TATTCTAACAAGAGAAACATAATTTTCCATCAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70623 195 - 101219884 ctatctcaagaaggtgggaccagaggctttgtaatgttcaccaacccac-----tgtagatttcatggcttacaagaggaagaaaccatggtggaactca-gtttgtctga-ttccaaattcacattcttt---cA-CGTTTCCATGAAAAATAGAAAAGATA--AATTGGGCTC---TATTCTAACAAGAGAAACATAATTTTCCATCAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192186 195 -    785044 ccaccttaagaaggtgggaccagaggctttgtaatgttcaccaacccac-----tgtagatttcatggcttacaagaggaagaaatcatggtggaactca-gtttgtctga-ttccaaattcacattcttt---cA-TGTTTCCATGAAAAATAGAAAAGATA--AATTGGGCTC---TATTCTAACAAGAGAAACATAATTTTCCATCAG
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10936901 195 -  13128814 ccatcttaagaaggtggggccagtggctttgcaatgttcactaacccac-----tgtagatttcttggcttgtaagaggaagtaagcatggtggagctcaggtttgtctga-ttctaaattcacatccttt---ca-tgt-tccacgAAAAGTAAAAAAGATA--AACTGGGCTC---TATTTTAAAAAGGGAGACACAATTTTCCATCAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7667974 195 +  14377064 ccatcttaagaaggtggggccagcggctttgcaatattcactaacccac-----tgtagattccttggcttgtaagaggaagaaagcatggtggaactcaggtttgtctga-ttctaaattcacatccttt---cA-TGT-TCTGTGAAAAGTAAAAAAGATA--AACTGGGCTT---TATTTTAAAAAGGGAAACACAATTTTCCATCAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135723 196 -   9889416 ccatcttaagaaggtggggccagcggccttgcaatgtttactaacccac-----tgtagatttcttggcttgtaagaggaagaaagcatggtggaactcaggttggtctga-ttctaaattcacatccttt---cA-TGTCTCCATGAAAAGTAAAAAAGATA--AACTGGGCTC---TATTTTAAAAAGGGAAACACAATTTTCCATCAG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20766090 170 +  38779656 ccatttggaaaaggtggaaccagagactttgagatgttcactaacttgc-----tatagatttcat----------------------------acctCAGATTTGTGTGA-TTCCAAAATCATGTGCTTT---TG-CATCTCCCAACTGAATAGAGATGACAGCAACTGGACTC---TATTGAAACCAAGGAAACACAATTTTCCATCAG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22713257 175 -  98207768 TCATTTTGATAGCAT------------TTTCTTATGGTTGCAAGTTTACATCTATGCAGATTTTATATAATATAAATAGAGAA------------------CCTTGTATGT-TTAGAGGACCTCGTGTGTT---AGCTGTGTCCATGCTAAAAAAAAAATAGC--GGTTAATATCATGTCTTTTAACTATTAAGACTTAGTTTTCCAAGTG
i mm10.chr16                   I 2 C 0
s canFam3.chr31                 28799766 164 -  39895921 CCAT---------------------GCTCTGAAAGCATTCATCACTTGT-----GATAGA---------------AAGGAAGAAACCATGGTATAACTCAGGCTTGGCAGACTTCAAAAGTCTCATGCTTTTTGTA-CTTTCATATGGAACAGAGAAGAGAGA--AACTAGACTC---TTCTGCCCCCAGGGAACCAATTTTTTTAATCAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6697437 169 +   6883506 -cagtttaaaaatgtgtgacttaagacttt------ttcattaatttgc-----tgtaaa-tacatgatttacaagagaaaggagccatggtagaacttgggtttatgtga-ctccaaaag---------t---ca-tgt----------actAGACTACAAA--AACCGGACTC---TTCTTCAACCAGCAAAACAAAATATCCCATCAG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30886592 366 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           92776 466 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055   0 -  10971483 C

a score=2829.000000
s hg38.chr14_GL000009v2_random    190522 1 +    201709 T
s panTro5.chr9                  41880601 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848094 1 + 205426864 A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7725 1 +  12760026 A
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120857 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276280 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175504 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194972 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180206 1 -   6739814 A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70818 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192381 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937096 1 -  13128814 A
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668169 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135919 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20766260 1 +  38779656 G
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22713432 1 -  98207768 G
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28799930 1 -  39895921 A
i canFam3.chr31                C 0 C 0
e micMur3.chr31                 30886592 366 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           92776 466 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055 0 -  10971483 C
e dasNov3.JH568778               6697606 0 +   6883506 C

a score=-3008.000000
s hg38.chr14_GL000009v2_random    190523 29 +    201709 TAAATGAATAATTCTTTTTTATTTTATTT
s otoGar3.GL873528              20766261 14 +  38779656 AAAA---------------TATATTATCT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22713433 16 -  98207768 -------------TATTTTTATTTTCCAT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28799931  9 -  39895921 GAAATGAAT--------------------
i canFam3.chr31                C 0 C 0
e micMur3.chr31                 30886592 366 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e rheMac8.chr2                 204276281  0 - 204787373 C
e eulFla1.LGHW01000695v1           92776 466 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4135920  0 -   9889416 C
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6697606  0 +   6883506 C
e cebCap1.NW_016107322v1         7668170  0 +  14377064 C
e saiBol1.JH378168              10937097  0 -  13128814 C
e manLeu1.NW_012099043v1          192382  0 -    785044 C
e chlSab2.chr22                    70819  0 - 101219884 C
e cerAty1.NW_012001605v1          180207  0 -   6739814 C
e macNem1.NW_012010856v1          194973  0 -  11645122 C
e macFas5.chr2                    175505  0 - 192460366 C
e nomLeu3.chr21                 42120858  0 -  86207423 C
e panPan2.chr3                  77848095  0 + 205426864 C
e gorGor5.CYUI01015020v1            7726  0 +  12760026 C
e panTro5.chr9                  41880602  0 + 116767853 C

a score=179.000000
s hg38.chr14_GL000009v2_random    190552 7 +    201709 TAtttta
s mm10.chr16                    22713449 7 -  98207768 AGTTTCA
i mm10.chr16                   C 0 I 170
e micMur3.chr31                 30886592 366 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e rheMac8.chr2                 204276281 0 - 204787373 C
e eulFla1.LGHW01000695v1           92776 466 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4135920 0 -   9889416 C
e canFam3.chr31                 28799940 0 -  39895921 C
e otoGar3.GL873528              20766275 0 +  38779656 C
e colAng1.NW_012123820v1           82055 0 -  10971483 C
e dasNov3.JH568778               6697606 0 +   6883506 C
e cebCap1.NW_016107322v1         7668170 0 +  14377064 C
e saiBol1.JH378168              10937097 0 -  13128814 C
e manLeu1.NW_012099043v1          192382 0 -    785044 C
e chlSab2.chr22                    70819 0 - 101219884 C
e cerAty1.NW_012001605v1          180207 0 -   6739814 C
e macNem1.NW_012010856v1          194973 0 -  11645122 C
e macFas5.chr2                    175505 0 - 192460366 C
e nomLeu3.chr21                 42120858 0 -  86207423 C
e panPan2.chr3                  77848095 0 + 205426864 C
e gorGor5.CYUI01015020v1            7726 0 +  12760026 C
e panTro5.chr9                  41880602 0 + 116767853 C

a score=-1962.000000
s hg38.chr14_GL000009v2_random    190559 101 +    201709 tttttattattatactttaagttttagggtacatgtgcacattgtgcagattagttacatatgtatacatgtgccatgctggtgtgctgcacccaGATACC
s canFam3.chr31                 28799940  19 -  39895921 ----TATCTTTATACTTTG-----TAGG-------------------------------------------------------------------------
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22713456 170 -  98207768 I
e micMur3.chr31                 30886592 366 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e rheMac8.chr2                 204276281   0 - 204787373 C
e eulFla1.LGHW01000695v1           92776 466 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e aotNan1.NW_018487195v1         4135920   0 -   9889416 C
e otoGar3.GL873528              20766275   0 +  38779656 C
e colAng1.NW_012123820v1           82055   0 -  10971483 C
e dasNov3.JH568778               6697606   0 +   6883506 C
e cebCap1.NW_016107322v1         7668170   0 +  14377064 C
e saiBol1.JH378168              10937097   0 -  13128814 C
e manLeu1.NW_012099043v1          192382   0 -    785044 C
e chlSab2.chr22                    70819   0 - 101219884 C
e cerAty1.NW_012001605v1          180207   0 -   6739814 C
e macNem1.NW_012010856v1          194973   0 -  11645122 C
e macFas5.chr2                    175505   0 - 192460366 C
e nomLeu3.chr21                 42120858   0 -  86207423 C
e panPan2.chr3                  77848095   0 + 205426864 C
e gorGor5.CYUI01015020v1            7726   0 +  12760026 C
e panTro5.chr9                  41880602   0 + 116767853 C

a score=9555.000000
s hg38.chr14_GL000009v2_random    190660 1 +    201709 T
s panTro5.chr9                  41880602 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848095 1 + 205426864 T
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7726 1 +  12760026 T
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120858 1 -  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276281 1 - 204787373 T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175505 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194973 1 -  11645122 T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180207 1 -   6739814 T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70819 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192382 1 -    785044 T
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937097 1 -  13128814 T
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668170 1 +  14377064 T
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135920 1 -   9889416 T
i aotNan1.NW_018487195v1       C 0 C 0
s mm10.chr16                    22713626 1 -  98207768 T
i mm10.chr16                   I 170 C 0
e micMur3.chr31                 30886592 366 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           92776 466 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28799959 0 -  39895921 C
e otoGar3.GL873528              20766275 0 +  38779656 C
e colAng1.NW_012123820v1           82055 0 -  10971483 C
e dasNov3.JH568778               6697606 0 +   6883506 C

a score=108502.000000
s hg38.chr14_GL000009v2_random    190661 13 +    201709 AAATGAATAATTC
s panTro5.chr9                  41880603 13 + 116767853 AAATGAATAATTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848096 13 + 205426864 AAATGAATAATTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7727 13 +  12760026 AAATGAATAATTC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120859 13 -  86207423 AAATGAATGATTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276282 13 - 204787373 AAATGAATAATTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175506 13 - 192460366 AAATGAATAATTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194974 13 -  11645122 AAATGAATAATTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180208 13 -   6739814 AAATGAATAATTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70820 13 - 101219884 AAATGAATAATTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192383 13 -    785044 AAATGAATAATTC
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937098 13 -  13128814 AAATGACTTATTC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668171 13 +  14377064 AAATGAATTATTC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135921 13 -   9889416 AAATGAATTATTC
i aotNan1.NW_018487195v1       C 0 C 0
s mm10.chr16                    22713627 13 -  98207768 ACATGAGTTATCT
i mm10.chr16                   C 0 C 0
s dasNov3.JH568778               6697606 13 +   6883506 AAAAAACTTATCT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30886592 366 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           92776 466 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e canFam3.chr31                 28799959  0 -  39895921 C
e otoGar3.GL873528              20766275  0 +  38779656 C
e colAng1.NW_012123820v1           82055  0 -  10971483 C

a score=878121.000000
s hg38.chr14_GL000009v2_random    190674 91 +    201709 TTAAACCTCAAAAATAAAAC--GTAGCAAAACCTCAATTCAAGAGTAGACATAAAGGTTG---TGACATGGGTAGCAGGGACATATGTCTAGTGAC
s panTro5.chr9                  41880616 91 + 116767853 TTAAATCTCAAAAATAAAAC--GTAGCAAAACCTCAATTCAAGAGTAGACATAAAGGTAG---TGGCATGGGTAGAAGGGACTTATGTCTAGTGAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848109 93 + 205426864 TTAAACCTCAAAAATAAAACATGTAGCAAAAGCTCAATTCAAGAGTAGACATAAAGGTTG---TGACATGGGTAGCAGGGACATATATCTAGTGAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7740 93 +  12760026 TTAAACCTCAAAAATAAAACACGTAGCAAAAGCTCAATTCAAGAGTAGACATAAAGGTTG---TGACATGGGTAGCAGGGACATATGTCTAGTGAC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120872 92 -  86207423 TTAAACCTCAAAAATAAAACATGTAGCAAAAGCTCAATTCAAGAGTAGACATAAAGGTTG---TGACATGGGTAGTAGGGATAT-TGTCTAGTGAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276295 93 - 204787373 TTAAACCTCAAAAATAAAACATGTAGCAAAAGCTCAATTCAAGAGTAGACATAAAGGTTG---TGACGTGGGTCGCAGGGACATATGTCTAGTGAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175519 93 - 192460366 TTAAACCTCAAAAATAAAACACGTAGCAAAAGCTCAATTCAAGAGTAGACATAAAGGTTG---TGACGTGGGTCGCAGGGACATATGTCTAGTGAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          194987 93 -  11645122 TTAAACCTCAAAAATAAAACATGTAGCAAAAGCTCAATTCAAGAGTAGACATAAAGGTTG---TGACGTGGGTCGCAGGGACATATGTCTAGTGAC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180221 93 -   6739814 TTAAACCTCAAAAATAAAACATGTAGCAAAAGCTCAATTCAAGAGTAGACATAAAGGTTG---TGACGTGGGTCGCAGGGACATATGTCTAGTGAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70833 93 - 101219884 TTAAACCTCAAAAATAAAACATGTAGCAAAAGCTCAATTCAAGAGTAGACATAAAGGTTG---TGACCTGGGTCGCAGGGACATATGTCTAGTGAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192396 93 -    785044 TTAAACCTCAAAAATAAAACATGTAGCAAAAGCTCAATTCAAGAGTAGACATAAAGGTTG---TGACATGGGTCGCAGGGACATATGTCTAGTGAC
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937111 93 -  13128814 TTAAATTTCAAAAATAAAACATGTAGCAAAAGCTCAGTTCAAGAGTAGACATAAAGGTTA---TGACATAGGTAGCAGGGACATAGGTCTAGTGAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668184 93 +  14377064 TTAAATTTCAAAAATAAAACATGTAACAAAAGCTCAATGCAAGAGTAGACATAAAGGTTG---TGACATAGGTAGCAGGGACATATGTCTAGTGAC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4135934 90 -   9889416 TTAAATTTCAAAAATAAA--ATGTAGCAAAAGCTCAATTCAAGAGTAGACATAAAGGTTG---TG-CATAGGTAGCAGGGACATATGTCTAGTGAC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20766275 88 +  38779656 TTAAGCCTTGAAGATAAAATACATAGCAAAAGCT-----CAAGACCAGATTTTCAGATAG---TGACATGGGCAGCAAAGACGTATATCTAGTTAC
i otoGar3.GL873528             C 0 I 10
s mm10.chr16                    22713640 91 -  98207768 ATGCAATTTAAGGATAAATTACGTAGCAATATCT-----CAAGATCAGACTTTTAAGTAGTCTTAGCATGGACATAAAGGATTTATGTCTAGCAGC
i mm10.chr16                   C 0 I 10
s canFam3.chr31                 28799959 80 -  39895921 --------TAAAAATAG-----GTAGAAAAACCTCAATTCAAGATTACATTTAAAAGTCA---TGACGTGAGTAGTGAGGACATATGTCTAGTGAC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6697619 89 +   6883506 TTAAACTTTGGAGGTAAAA-ATG-ACCAAAACTTCAACTCAAGAC--AACTCAAAAGTAG---TTTTAGGAGTAGATAGGATAGATGTCTAGTGAC
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30886592 366 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           92776 466 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C

a score=14691.000000
s hg38.chr14_GL000009v2_random    190765 2 +    201709 A--G
s panTro5.chr9                  41880707 4 + 116767853 ATAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848202 4 + 205426864 ATAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7833 4 +  12760026 ATAG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120964 4 -  86207423 ATAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276388 4 - 204787373 ATAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175612 4 - 192460366 ATAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195080 4 -  11645122 ATAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180314 4 -   6739814 ATAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70926 4 - 101219884 ATAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192489 4 -    785044 ATAG
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937204 4 -  13128814 ATAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668277 4 +  14377064 ATAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136024 4 -   9889416 ACAG
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           93242 2 +   1229009 --AG
i eulFla1.LGHW01000695v1       I 466 I 119
s otoGar3.GL873528              20766373 2 +  38779656 --AG
i otoGar3.GL873528             I 10 C 0
s mm10.chr16                    22713741 2 -  98207768 --AA
i mm10.chr16                   I 10 C 0
s canFam3.chr31                 28800039 2 -  39895921 AT--
i canFam3.chr31                C 0 I 7
s dasNov3.JH568778               6697708 2 +   6883506 AT--
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30886592 366 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055 0 -  10971483 C

a score=725714.000000
s hg38.chr14_GL000009v2_random    190767 78 +    201709 ----------ATTTCCTATGCATATCTGACCAAAAATCCCCCTCATGATTTTCAAATCAGATGCTTAACTACATTTAAT--GAGTTTCCC
s panTro5.chr9                  41880711 78 + 116767853 ----------ATTTGCTATGCATATCTGACCAAAAATCTCCCTCATGATTTTCAAATCAGATGCATAACTGAATTTAAT--GAGTTTCAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848206 78 + 205426864 ----------ATTTGCTATGCATATCTGACCAAATATCTCCCTCATGATTTTCAAATCAGATGCACAACTGCATTTAAT--GAGTTTCAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7837 78 +  12760026 ----------GTTTGCTATGCATATCTGACCGAATATCTCCCTCGTGATTTTCAAATCAGATGCACAACTACATTTAAT--GAGTTTCAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42120968 78 -  86207423 ----------ATTTGCTATGCATATCTGACCAAAAATCTCCCTCATGATTTTCAAATCAGATGCAAAACTGCCTTTAAT--GAGTTTCAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276392 78 - 204787373 ----------GTTTGCTATGCATATCTGACCAAAAATCTCCCTCCTGATTTTCGAATCACATGCACAACTGCATTTAAC--GAGTTTCAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175616 78 - 192460366 ----------GTTTGCTATGCATATCTGACCAAAAATCTCCCTCCTGATTTTCGAATCACATGCACAACTGCATTTAAC--GAGTTTCAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195084 78 -  11645122 ----------GTTTGCTATGCATATCTGACCAAAAATCTCCCTCCTGATTTTCGAATCACATGCACAACTGCATTTAAC--GAGTTTCAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180318 78 -   6739814 ----------GTTTGCTATGCATATCTGACCAAAAATCTCCCTCCTGATTTTCGAATCACATGCACAACTGCATTTAAC--GAGTTTCAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    70930 78 - 101219884 ----------GTTTGCTATGCATATCTGACCAAAAATCTCCCTCCTGATTTTCAAATCACATGCACAACTGCATTTAAT--GAGTTTTGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192493 78 -    785044 ----------GTTTGCTATGCATATCTGACCAAAAATCTCCCTCCTGATTTTCGAATCACATGCACAACTGCATTTAAC--GAGTTCCAT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937208 78 -  13128814 ----------ATTTGCTATGCATATCTGACCAAAAATCTCCCTCATTATTTTCAATGCAGATGCACAACTGCATTTAAT--GAGTTCCAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668281 77 +  14377064 ----------ATTTGCTATGCATATCTGACCAAAAATCTCCCTCATGATTTCAAAT-CAGATGCACAACTGCATTTAAT--GAGTTTCAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136028 77 -   9889416 ----------ATTTGCTATG-ATATCTGACCAAAAATCTCCCTCATGATTTTCAAATCAGATGCACAACTGCATTTAAT--GAGTTTCAT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20766375 74 +  38779656 ----------AATTGCTATAAA----AGACCGAAAGTCG--CTCATGATTCCCAATTCAGATGCACAGTGGCATTTCATAAGAGTTCCAT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22713743 78 -  98207768 ----------AATTACTATGAAAATATGAGCAAAACCCACACTCATCATTTTCAGGTTAGATGTGCAGCTGCATTTGAT--AATGATCCT
i mm10.chr16                   C 0 I 2
s canFam3.chr31                 28800048 80 -  39895921 ----------AGCTACTATGAACGCCTGACTAAAAATCTCCCTCATGATTCCCAAATCATATGCACGGCTACATTTAATAAGAGTTACAT
i canFam3.chr31                I 7 C 0
s dasNov3.JH568778               6697710 80 +   6883506 AGTGATAGAGGATTGCTAT----------TCAAAAATCTCCCTTGTGATTCCCAAATCACATGCGAAACTGCTCATAATTGGAATTATGT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30886592 366 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93244 119 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C

a score=360822.000000
s hg38.chr14_GL000009v2_random    190845 29 +    201709 GAATCATTAATATCAGGCTCTGAAAACAG
s panTro5.chr9                  41880789 29 + 116767853 GAATCATTAATATCAGGCTCTGAAAACAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848284 29 + 205426864 GAATCATTAATATCAGGCTCTGAAAACAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7915 29 +  12760026 GAATCATTAATATCAGGCTCTGAAAACAG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121046 29 -  86207423 AAATCATAAATATCAGTCTCTGAAAACAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276470 29 - 204787373 GAATCATTAATATCAGGCTCTGAAAGCAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175694 29 - 192460366 GAATCATTAATATCAGGCTCTGAAAACAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195162 29 -  11645122 GAATCATTAATATCAGGCTCTGAAAACAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180396 29 -   6739814 GAATCATTAATATCAGGCTCTGAAAACAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71008 29 - 101219884 GAATCATTAATATCAGGCTCTGAAAACAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192571 29 -    785044 GAATCATTAATATCAGGCTCTGAAAACAG
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937286 29 -  13128814 GAATCATTAATATCAGGCTTTGAAAACAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668358 29 +  14377064 GAATCATTAATATCAGGCTTTGAAAACAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136105 29 -   9889416 GAATCATTAATATCAGGCTCTGAAAACAG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30886958 29 -  47401472 GAATCATTAACATCAGGCTTTGAAAACAG
i micMur3.chr31                I 366 I 84
s otoGar3.GL873528              20766449 29 +  38779656 GGACCATAAATATCCAATTCTGCAAACGG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22713823 29 -  98207768 GAATCATCAATGCCAGCCTTTGAAAACAC
i mm10.chr16                   I 2 C 0
s canFam3.chr31                 28800128 26 -  39895921 GAATC---AGTATCAGGCTCTGGAAGCTG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6697790 27 +   6883506 GGATCATGAATATAAGGCTCTG--AACAG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93244 119 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C

a score=100864.000000
s hg38.chr14_GL000009v2_random    190874 10 +    201709 GATCATTAAA
s panTro5.chr9                  41880818 10 + 116767853 GATCATTAGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848313 10 + 205426864 GATCATTAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7944 10 +  12760026 GATCATTAAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121075 10 -  86207423 GATTGTTAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276499 10 - 204787373 GATCATTAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175723 10 - 192460366 GATCATTAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195191 10 -  11645122 GATCATTAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180425 10 -   6739814 GATCATTAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71037 10 - 101219884 GATCATTAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192600 10 -    785044 GATCATTAAA
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937315 10 -  13128814 AATCATTAAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668387 10 +  14377064 AATCATTAAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136134 10 -   9889416 AATCATTAAA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20766478 10 +  38779656 AATTATCAAA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22713852 10 -  98207768 AGTTTTCAGA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28800154 10 -  39895921 AATTACCAAA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6697817 10 +   6883506 AATTATGAAA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30886987 84 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93244 119 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C

a score=8295.000000
s hg38.chr14_GL000009v2_random    190884 1 +    201709 A
s panTro5.chr9                  41880828 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848323 1 + 205426864 A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7954 1 +  12760026 A
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121085 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276509 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175733 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195201 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180435 1 -   6739814 A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71047 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192610 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937325 1 -  13128814 A
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668397 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136144 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           93363 1 +   1229009 G
i eulFla1.LGHW01000695v1       I 119 I 59
s otoGar3.GL873528              20766488 1 +  38779656 A
i otoGar3.GL873528             C 0 I 1
s mm10.chr16                    22713862 1 -  98207768 G
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28800164 1 -  39895921 G
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6697827 1 +   6883506 G
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30886987 84 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055 0 -  10971483 C

a score=500868.000000
s hg38.chr14_GL000009v2_random    190885 55 +    201709 -ATGATTAAGACTTTCAACAACAAATA-TCTTATCTAAATAGTAAGGAAATTATATT
s panTro5.chr9                  41880829 55 + 116767853 -ATGATTAAGATTTTCAACAACAAAGA-TTTTATCTAAATAGTAAGGAAATTATATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848324 54 + 205426864 -A-GATTAAGATTTTCAACAACAAAGA-TCTTATCTAAATAGTAAGGAAATTATATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            7955 54 +  12760026 -A-GATTAAGATTTTCAACAACAAAGA-TCTTATCTAAATAGTAACTAAATTATATT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121086 55 -  86207423 -ATTATTACGATTTTCAACACCAAAGA-TCTTATCTAAATAGTAAGGAGATTATATT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276510 55 - 204787373 -AAGATTAAGATTTTCAACAAGAAAGA-TCTTATCTAAATAGTAAGGAAATTATATG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175734 55 - 192460366 -AAGATTAAGATTTTCAACAAGAAAGA-TCTTATCTAAATAGTAAGGAAATTATATG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195202 55 -  11645122 -AAGATTAAGATTTTCAACAAGAAAGA-TCTTATCTAAATAGTAAGGAAATTATATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180436 55 -   6739814 -AAGATTAAGATTTTCAACAAGAAAGA-TCTTATCTAAATAGTAAGGAAATTATATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71048 55 - 101219884 -AAGATTAAGATTTTCAACAAGAAAGA-TCTTATCTAAATAGTAAGGAAATTATATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192611 55 -    785044 -AAGATTAAGATTTTCAACAAGAAAGA-TCTTATCTAAATAGTAAGGAAATTATATT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937326 55 -  13128814 -AAGATTAAGATTTTCAACAATGAAGA-TCTTATCTAAATAGTAAGGAAATTATATT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668398 53 +  14377064 -AC-CTTAAGATTTTCAACAATGAA-A-TCTTATCTAAATAGTAAGGAAATTATTTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136145 55 -   9889416 -ATGATTAAGATTTTCAACAACGAAGA-TCTTATCTAAATAGTAAGGAAGTTATATT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20766490 54 +  38779656 -AAGATTACAATTTTCAATAACAAA-A-TCTTATCTAAATAATTGGAAAATTATATT
i otoGar3.GL873528             I 1 I 4
s mm10.chr16                    22713864 55 -  98207768 -ATGTTTAAGATTTTTAACAGGGATTG-CCATTTATTAATAGCAAGAACATGATATT
i mm10.chr16                   I 1 I 4
s canFam3.chr31                 28800166 52 -  39895921 -AAGA-TAAGATTTTTAACAACAAAGATTTTTGTCTAAATAGTC---AAATTCTATT
i canFam3.chr31                I 1 I 4
s dasNov3.JH568778               6697828 53 +   6883506 GAAGATTAAT-TTTTTAAAGACAAAGA-CCTCCTATAAATAGTAAGAATCTTATT--
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30886987 84 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93364 59 +   1229009 I
e eulMac1.LGHX01000692v1           79966 12218 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C

a score=213260.000000
s hg38.chr14_GL000009v2_random    190940 20 +    201709 ----AGATGGCTCCATTCC-CTGGG
s panTro5.chr9                  41880884 20 + 116767853 ----AGATGGCTCCATTCC-CTGGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848378 20 + 205426864 ----AGAGGGCTCCATTCC-CTGGG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8009 20 +  12760026 ----AGAGGGCTCCATTCC-CTGGG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121141 19 -  86207423 ----AGATGG-TCGATTCC-CTGGG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276565 20 - 204787373 ----AGAGGGCTGCATTCC-CTGGG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175789 20 - 192460366 ----AGAGGGCTGCATTCC-CTGGG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195257 20 -  11645122 ----AGAGGGCTGCATTCC-CTGGG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180491 20 -   6739814 ----AGAGGGCTGCATTCC-CTGGG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71103 20 - 101219884 ----AGAGGGCTCCATTCC-CTGGG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192666 20 -    785044 ----AGAGGGCTGCATTCC-CTGGG
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937381 20 -  13128814 ----AGAGGACTCTATTCC-CTGGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668451 20 +  14377064 ----AGAGGACTCTATTCC-CTGGG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136200 20 -   9889416 ----AGAGGACTCTATTCC-CTGGG
i aotNan1.NW_018487195v1       C 0 C 0
s eulMac1.LGHX01000692v1           92184 20 +   1212331 ----AGAAGACTTTATTCC-CCAGG
i eulMac1.LGHX01000692v1       I 12218 C 0
s eulFla1.LGHW01000695v1           93423 20 +   1229009 ----AGAAGACTTTATTCC-CCAGG
i eulFla1.LGHW01000695v1       I 59 C 0
s otoGar3.GL873528              20766548 20 +  38779656 ----AGAAGACTGTATTCC-CCAAG
i otoGar3.GL873528             I 4 C 0
s mm10.chr16                    22713923 21 -  98207768 ----GCAAGACTTTATTCCTCTATG
i mm10.chr16                   I 4 C 0
s canFam3.chr31                 28800222 20 -  39895921 ----AGAGGACTCTAGCCA-CCAGG
i canFam3.chr31                I 4 C 0
s dasNov3.JH568778               6697881 23 +   6883506 AGATAGAATGTTCC-TTCT-TTAGG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30886987 84 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C

a score=1179235.000000
s hg38.chr14_GL000009v2_random    190960 101 +    201709 CAG-TCTAGTTAACAATTCGACTTGTTCAAAG-CTATAAAATATGGCAACTTAAAAAATTATGAAAGTTTTTCTAACTTTGTGCTTAAGGTAGTTGGCCATTC
s panTro5.chr9                  41880904 101 + 116767853 CAG-TCTAGTTAATAATTCAACTTGTTCAAAG-CTATAAAATATGGCAACTTAAAAAATTATGAAAGTTTTTCTAACTTTTTGCTTAAGGTAGTTGGCCATTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848398  94 + 205426864 CAG-ACTAGTTAACAATTCAACTTGTTCAAAG-CTATAAAATATGGCAACTTAAAAAATTATGAAAGTTTTTCTAACTTTGTGCTTAA-------GGCCATTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8029  94 +  12760026 CAG-ACTAGTTAACAATTCAACTTGTTCAAAG-CTATAAAATATGGCAACTTAAAAAATTATGAAAGTTTTTCTAACTTTGTGCTTAA-------GGCCATTC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121160 101 -  86207423 CAG-TCTAGTTAACAATTCAACTTGTTCAAAG-CTATAACATATGGCAACTTAAAAAATTATGAAAGTTTTTCTAACTTTGTGCTTAAGGTATTTGTCCATTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276585 101 - 204787373 CAG-TCTAGTTAACAACTCAACTTGTTCAAAG-CTATAAAATATGGCAACTTAAAAAATTATGAAAGTTTTTCTAACTTTGTGCTTAAGGTGGTTGGCCATTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175809 101 - 192460366 CAG-TCTAGTTAACAACTCAACTTGTTCAAAG-CTATAAAATATGGCAACTTAAAAAATTATGAAAGTTTTTCTAACTTTGTGCTTAAGGTGGTTGGCCATTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195277 101 -  11645122 CAG-TCTAGTTAACAACTCAACTTGTTCAAAG-CTATAAAATATGGCAACTTAAAAAATTATGAAAGTTTTTCTAACTTTGTGCTTAAGGTGGTTGGCCATTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180511 101 -   6739814 CAG-TCTAGTTAACAACTCAACTTGTTCAAAG-CTATAAAATATGGCAACTTAAAAAATTATGAAAGTTTTTCTAACTTTGTGCTTAAGGTGGTTGGCCATTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71123 101 - 101219884 CAG-TCTAGTTAACAATTCAACTTGTTCAAAG-CTATAAAATATGGCAACTTAAAAAATTATGAAAGTTTTTCTAACTTTGTGCTTAAGGTGGTTGGCCATTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192686 101 -    785044 CAG-TCTAGTTAACAACTCAACTTGTTCAAAG-CTATAAAATATGGCAACTTAAAAAATTATGAAAGTTTTTCTAACTTTGTGCTTAAGGTGGTTGGCCATTC
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937401 100 -  13128814 CAG-TCTAG-TAACAATTTAGCTTGTTCAATA-TTATATAATATGGCAGCtttaaaaattataaaaatttatCTAACTTTGTGCTTAAGGTAGTTGGTCGTTC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668471 100 +  14377064 CAG-TCTAG-TAACAATTTAGCTTGTTCAATA-TTATATAATATGGTAGATTAAAAAATTATAAAAATTTTTCTAACTTTGTGCTTAAGGTAGTTGGCCATTC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136220 101 -   9889416 CAG-TCTAGTTAACAATTTAGCTTGTTCAATA-TTATACAATATAGCAACATAAAAACTTATAAAAATTTTTCTAACTTTGTGCTTAAGGTAGTTGGCTATTC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30887071  98 -  47401472 cag-tctggttaatAATTCCCCTTGTTCAATT-ATGTAAAATATGATAATTTAAAAAATTATGAAAGTTT---TAAATATGTGTTTAATGTGGTTGGCTATTT
i micMur3.chr31                I 84 C 0
s eulMac1.LGHX01000692v1           92204  98 +   1212331 CAG-TCTGGTTAACAATTCCCCTTGTTCGATT-atataaaatatgataattgaaataattattaaagttt---taaatatGTGCTTAATGTAATTGGTTAGTT
i eulMac1.LGHX01000692v1       C 0 I 4468
s eulFla1.LGHW01000695v1           93443  98 +   1229009 CAG-TCTGGTTAACAATTCCCCTTGTTCGATT-atataaaatatgataattgaaataattattaaagttt---taaatatGTGCTTAATGTAATTGGTTAGTT
i eulFla1.LGHW01000695v1       C 0 I 72
s otoGar3.GL873528              20766568  97 +  38779656 CAG-TCTGATAAACAATTCACCTTGTTCAATT-ATATAAAATATGGTAACTGAAAAAATTGTAAAAG-TT---TAAATTTGCGCCTAACAGTTTTGGCTATTT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22713944  93 -  98207768 CTC-TCTGGTT--CAGTTCAGCTTTTTCAGTA-TTATAAAATACAATAGCTAAAATTA-TATGGAAATTCTTTTAGTTTTCTGCTTAATATATTTTTC-----
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28800242  87 -  39895921 CAGTTCTGGTTCACAATTCAGCTTGCTCAATGTTTATAAAATATGACAAC--AAATAATTATAGAA-TTCTTCTAACTTTGTGTCTATAC-------------
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6697904  97 +   6883506 CAG-TCTGGTTAACAATTCGGCCTGTTCAAAG-TTATAAAAGACAACAAACGAAAAAATTGTGAAAGTTATTC----TTTGTGCTTTGGGTATttggccctat
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e colAng1.NW_012123820v1           82055   0 -  10971483 C

a score=31122.000000
s hg38.chr14_GL000009v2_random    191061 2 +    201709 TT
s panTro5.chr9                  41881005 2 + 116767853 TT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848492 2 + 205426864 TT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8123 2 +  12760026 TT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121261 2 -  86207423 TT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276686 2 - 204787373 TT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175910 2 - 192460366 TT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195378 2 -  11645122 TT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180612 2 -   6739814 TT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71224 2 - 101219884 TT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192787 2 -    785044 TT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937501 2 -  13128814 TT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668571 2 +  14377064 TT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136321 2 -   9889416 TT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30887169 2 -  47401472 TT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20766665 2 +  38779656 TT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22714038 2 -  98207768 TT
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 28800329 2 -  39895921 TT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6698001 2 +   6883506 tt
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93541 72 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e colAng1.NW_012123820v1           82055 0 -  10971483 C

a score=490542.000000
s hg38.chr14_GL000009v2_random    191063 43 +    201709 CCTCTTGGGAATAAGAAGGGTAGAT-TTTCTGTCGAAGCATTTT
s panTro5.chr9                  41881007 43 + 116767853 CCTCTTGGGAATAAGAAGGGCGGAT-TTTCTGTCGAAGCATTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848494 43 + 205426864 CCTCTTGAGAATAAAAAGGGCAGAT-TTTCTGTCGAAGCATTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8125 43 +  12760026 CCTCTTGAGAATAAAAAGGACAGAT-TTTCTGTCGAAGCATTTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121263 43 -  86207423 CCTCTTGGGAATAAAAAGGGCAGAT-TTCCTGTCGAAGCATTTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276688 43 - 204787373 CCTCTTGGGAATAAAAAGGGCAGAT-TTTCTGTCAAAGCATTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175912 43 - 192460366 CCTCTTGGGAATAAAAAGGGCAGAT-TTTCTGTCAAAGCATTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195380 43 -  11645122 CCTCTTGGGAATAAAAAGGGCAGAT-TTTCTGTCAAAGCATTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180614 43 -   6739814 CCTCTTGGGAATAAAAAGGGCAGAT-TTTCTGTCAAAGCATTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71226 43 - 101219884 CCTCTTGGGAATAAAAAGGGCAGAT-TTTCTGTCAAAGCATTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192789 43 -    785044 CCTCTTGGGAATAAAAAGGGCAGAT-TTTCTGTCAAAGCATTTT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937503 43 -  13128814 CCTCTTGGTAATAAAAAGGACAGAT-TTTCTGTCAAAGCATTTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668573 43 +  14377064 CCTCTTGGTAATAAAAAGGACAGAT-TTTCTGTCAAAGCATTTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136323 43 -   9889416 CCTCTTGGTAATAAAAAGGACAGAT-TTTCTGTCAAAGCATTTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30887171 43 -  47401472 CCTCTTGGGAATAAAAAGGGCAGAT-ATTTTGTCAAAGTATTTT
i micMur3.chr31                C 0 I 51
s otoGar3.GL873528              20766667 43 +  38779656 CCTCTTGGGAATAAAAAGGGTAGAT-ATTTTGTCAAAGCATTTC
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22714040 39 -  98207768 CCAC---AAAATAAAAAGGG-AGAT-TACTAAGCAAAGCACATT
i mm10.chr16                   C 0 I 4
s canFam3.chr31                 28800331 44 -  39895921 TCTCCTGGAAATTAAAAGGGCAGATATTTCTGTCAAAGCCTCTT
i canFam3.chr31                C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93541 72 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6698003  0 +   6883506 C

a score=267796.000000
s hg38.chr14_GL000009v2_random    191106 28 +    201709 TCTATTGCTTTTCA--ATTTCCTTTTATGG
s panTro5.chr9                  41881050 28 + 116767853 GCTATTGCTTTTCA--ATTTCCATTTATGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848537 28 + 205426864 GCTACTGCTTTTCA--ATTTCCATTTATGG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8168 28 +  12760026 GCTATTGCTTTTCA--ATTTCCATTTATGG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121306 28 -  86207423 GCTATTGTTTTTCA--ATTTCCATTTATGA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276731 28 - 204787373 GCTATTGCTTTTCA--ATTTCCATTTATGG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175955 28 - 192460366 GCTATTGCTTTTCA--ATTTCCATTTATGG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195423 28 -  11645122 GCTATTGCTTTTCA--ATTTCCATTTATGG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180657 28 -   6739814 GCTATTGCTTTTCA--ATTTCCATTTATGG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71269 28 - 101219884 GCTATTGCTTTTCA--ATTTCCATTTATGG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192832 28 -    785044 GCTATTGCTTTTCA--ATTTCCCTTTATGG
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937546 28 -  13128814 GCTATTGCTTTTCA--TTTTCCATTTATGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668616 28 +  14377064 GCTATCGCTTTTCA--TTTTCCATTTATGG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136366 28 -   9889416 GCTATTGCTTTTCA--TTTTCCATTTATAG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20766710 28 +  38779656 ACTAGTCTTTTTCA--ATCTCTGTTTATGG
i otoGar3.GL873528             C 0 I 8
s mm10.chr16                    22714083 30 -  98207768 CCTTTTATGTTTTAATATTTTTGTTTCTTG
i mm10.chr16                   I 4 I 1
s canFam3.chr31                 28800375 28 -  39895921 GCTGTTGTTTTCCA--ATTTCTATTTCTGG
i canFam3.chr31                C 0 I 8
e micMur3.chr31                 30887214 51 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93541 72 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6698003  0 +   6883506 C

a score=7910.000000
s hg38.chr14_GL000009v2_random    191134 1 +    201709 A
s panTro5.chr9                  41881078 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848565 1 + 205426864 G
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8196 1 +  12760026 G
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121334 1 -  86207423 G
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276759 1 - 204787373 G
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175983 1 - 192460366 G
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195451 1 -  11645122 G
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180685 1 -   6739814 G
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71297 1 - 101219884 G
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192860 1 -    785044 G
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937574 1 -  13128814 G
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668644 1 +  14377064 G
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136394 1 -   9889416 G
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           93613 1 +   1229009 A
i eulFla1.LGHW01000695v1       I 72 I 3647
s otoGar3.GL873528              20766746 1 +  38779656 A
i otoGar3.GL873528             I 8 C 0
s mm10.chr16                    22714114 1 -  98207768 G
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 28800411 1 -  39895921 G
i canFam3.chr31                I 8 C 0
e micMur3.chr31                 30887214 51 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e colAng1.NW_012123820v1           82055 0 -  10971483 C
e dasNov3.JH568778               6698003 0 +   6883506 C

a score=33224.000000
s hg38.chr14_GL000009v2_random    191135 3 +    201709 AAA
s panTro5.chr9                  41881079 3 + 116767853 AAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848566 3 + 205426864 AAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8197 3 +  12760026 AAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121335 3 -  86207423 AAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276760 3 - 204787373 AAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175984 3 - 192460366 AAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195452 3 -  11645122 AAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180686 3 -   6739814 AAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71298 3 - 101219884 AAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192861 3 -    785044 AAA
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937575 3 -  13128814 AAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668645 3 +  14377064 AAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136395 3 -   9889416 AAA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20766747 3 +  38779656 GAA
i otoGar3.GL873528             C 0 I 11
s mm10.chr16                    22714115 3 -  98207768 AGA
i mm10.chr16                   C 0 I 18
s canFam3.chr31                 28800412 3 -  39895921 AAA
i canFam3.chr31                C 0 C 0
e micMur3.chr31                 30887214 51 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e colAng1.NW_012123820v1           82055 0 -  10971483 C
e dasNov3.JH568778               6698003 0 +   6883506 C

a score=266242.000000
s hg38.chr14_GL000009v2_random    191138 25 +    201709 -------TAGATAAAATAGCAATTTTTTAA--TT
s panTro5.chr9                  41881082 25 + 116767853 -------TAGATAAAATAGCAATTTTTTAG--TT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848569 25 + 205426864 -------TAGATAAAATAGCAATATTTTAG--TT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8200 25 +  12760026 -------TAGATAAAATAGCAATTTTTTAG--TT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121338 24 -  86207423 -------TAGATAAAATAGCAAT-TTTTAG--TT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276763 25 - 204787373 -------TAGATAAAATAGCAATTTTTTAG--TT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    175987 25 - 192460366 -------TAGATAAAATAGCAATTTTTTAG--TT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195455 25 -  11645122 -------TAGATAAAATAGCAATTTTTTAG--TT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180689 25 -   6739814 -------TAGATAAAATAGCAATTTTTTAG--TT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71301 25 - 101219884 -------TAGATAAAATAGCAATTTTTTAG--TT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192864 25 -    785044 -------TAGATAAAATAGCAACTTTTTAG--TT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937578 25 -  13128814 -------TAGATAAAATAGCAATTTTTTAG--TT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668648 25 +  14377064 -------TAGATAAAATAGCAATTTTTTAG--TT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136398 25 -   9889416 -------TAGATAAAATAGCAATTTTTTAG--TT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30887265 25 -  47401472 -------TAGATAAAATAGCAATTTTTCAA--TT
i micMur3.chr31                I 51 C 0
s otoGar3.GL873528              20766761 25 +  38779656 -------TACATAAAATGGTAATTTTTCAG--TT
i otoGar3.GL873528             I 11 C 0
s mm10.chr16                    22714136 27 -  98207768 -------TGGGTATCATGatatatttttaagttt
i mm10.chr16                   I 18 C 0
s canFam3.chr31                 28800415 32 -  39895921 TGGGGATGACTTAAAGTAGTCATTTTTCAG--TT
i canFam3.chr31                C 0 I 4512
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6698003  0 +   6883506 C

a score=256397.000000
s hg38.chr14_GL000009v2_random    191163 29 +    201709 ATAAATTTAAAGTCAAAATGGAGATAATT
s panTro5.chr9                  41881107 29 + 116767853 ATAAATTTATAGTCAAAATGGAGATAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848594 29 + 205426864 ATAAATTTAAAGTCAAAATGGAGAtaatt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8225 29 +  12760026 ATAAATTTAAAGTCAAAATGGAGATAATT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121362 28 -  86207423 ACAAATTTAAAGTCAAAATGGAGATAAT-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276788 29 - 204787373 ATAAATTTAAAGTCAAAATGGGGATCATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176012 29 - 192460366 ATAAATTTAAAGTCAAAATGGGGATCATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195480 29 -  11645122 ATAAATTTAAAGTCAAAATGGGGATCATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180714 29 -   6739814 ATAAATTTAAGGTCAAAATGGGGATCATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71326 29 - 101219884 ATAAATTTAAAGTCAAAATGGGGATCATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192889 29 -    785044 ATAAATTTAAGGTCAAAATGGGGATCATT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937603 29 -  13128814 ACAAATTAAAAATTAAAATGCAGATAATT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668673 29 +  14377064 ATAAATTAAAAATCAAAATGGAGATAATT
i cebCap1.NW_016107322v1       C 0 I 15
s aotNan1.NW_018487195v1         4136423 29 -   9889416 ACAAATTAAAAATCAAAATGGAGATAATT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30887290 29 -  47401472 AAAAATTTCAAGTCAAAATGGAGGTAATT
i micMur3.chr31                C 0 I 2693
s otoGar3.GL873528              20766786 29 +  38779656 AAAAATTTAAAATCAAAATGGAGGCATTT
i otoGar3.GL873528             C 0 I 26
s mm10.chr16                    22714163 27 -  98207768 aaaaattaaaaat--aaatatatatattt
i mm10.chr16                   C 0 C 0
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6698003  0 +   6883506 C

a score=24269.000000
s hg38.chr14_GL000009v2_random    191192  8 +    201709 AAG----TATCT
s panTro5.chr9                  41881136  8 + 116767853 AAG----TATCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848623 12 + 205426864 aagtaattatct
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8254  3 +  12760026 AAG---------
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121390  5 -  86207423 -------TATCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276817 12 - 204787373 AAGTAATTATCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176041 12 - 192460366 AAGTAATTATCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195509 12 -  11645122 AAGTAATTATCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180743 12 -   6739814 AAGTAATTATCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71355 12 - 101219884 AAGTAATTATCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192918 12 -    785044 AAGTAATTATCT
i manLeu1.NW_012099043v1       C 0 C 0
s otoGar3.GL873528              20766841 12 +  38779656 GAGAAACTTTAT
i otoGar3.GL873528             I 26 C 0
s mm10.chr16                    22714190  8 -  98207768 ----taatttCT
i mm10.chr16                   C 0 I 3408
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4136452  0 -   9889416 C
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6698003  0 +   6883506 C
e cebCap1.NW_016107322v1         7668702 15 +  14377064 I
e saiBol1.JH378168              10937632  0 -  13128814 C

a score=51978.000000
s hg38.chr14_GL000009v2_random    191200 19 +    201709 CC-ATTAATTAAGTAAAGAT
s panTro5.chr9                  41881144 19 + 116767853 CC-ATTAATTAAGTAAAGAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848635 19 + 205426864 cc-attaattaagtaaagat
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8257  7 +  12760026 -------------TAAAGAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121395 19 -  86207423 CC-CTCAATTAAGTAAAGAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276829 19 - 204787373 CC-ACTAATTAAGTAAAGAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176053 19 - 192460366 CC-ACTAATTAAGTAAAGAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195521 19 -  11645122 CC-ACTAATTAAGTAAAGAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180755 19 -   6739814 CC-ACTAATTAAGTAAAGAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71367 19 - 101219884 CC-ACTAATTAAGTAAAGAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192930 19 -    785044 CC-ACTAATTAAGTAAAGAT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937632  5 -  13128814 --------TTCAG-------
i saiBol1.JH378168             C 0 C 0
s aotNan1.NW_018487195v1         4136452  5 -   9889416 --------TTAAG-------
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20766853 20 +  38779656 TTGATTGATGAAACACAAAT
i otoGar3.GL873528             C 0 I 259
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6698003  0 +   6883506 C
e cebCap1.NW_016107322v1         7668702 15 +  14377064 I

a score=48524.000000
s hg38.chr14_GL000009v2_random    191219 10 +    201709 TAATT-TTTTT
s panTro5.chr9                  41881163 10 + 116767853 TAATT-TTTCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848654 10 + 205426864 taatG-TCTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8264 10 +  12760026 TAATG-TTTTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121414 10 -  86207423 TAATT-TTTTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276848 10 - 204787373 TAATG-TTTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176072 10 - 192460366 TAATG-TTTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195540 10 -  11645122 TAATG-TTTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180774 10 -   6739814 TAATG-TTTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71386 11 - 101219884 TAATGTTTTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192949 10 -    785044 TAATG-TTTTT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937637 10 -  13128814 TAATT-TTTTT
i saiBol1.JH378168             C 0 I 3
s aotNan1.NW_018487195v1         4136457 10 -   9889416 TAATT-TTTTA
i aotNan1.NW_018487195v1       C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e otoGar3.GL873528              20766873 259 +  38779656 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6698003  0 +   6883506 C
e cebCap1.NW_016107322v1         7668702 15 +  14377064 I

a score=50099.000000
s hg38.chr14_GL000009v2_random    191229 11 +    201709 TAAAATAGCAT
s panTro5.chr9                  41881173 11 + 116767853 AAAAATAGCAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848664 11 + 205426864 AAAAATAGCAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8274 11 +  12760026 AAAAATAGCAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121424 11 -  86207423 AAAAATAGCAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276858 10 - 204787373 T-AAATAGTAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176082 10 - 192460366 T-AAATAGTAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195550 10 -  11645122 T-AAATAGTAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180784 10 -   6739814 T-AAATAGCAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71397 10 - 101219884 T-AAATAGTAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192959 10 -    785044 T-AAATAGTAT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937650 11 -  13128814 TAAAATAGCAT
i saiBol1.JH378168             I 3 C 0
s cebCap1.NW_016107322v1         7668717 11 +  14377064 AAAAATAGCAT
i cebCap1.NW_016107322v1       I 15 C 0
s aotNan1.NW_018487195v1         4136467 11 -   9889416 AAAAATAGCAT
i aotNan1.NW_018487195v1       C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e otoGar3.GL873528              20766873 259 +  38779656 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6698003  0 +   6883506 C

a score=80458.000000
s hg38.chr14_GL000009v2_random    191240 16 +    201709 TTACTATATTCTAATC
s panTro5.chr9                  41881184 16 + 116767853 TTACTAAATTCTAATC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848675 16 + 205426864 TTACTAAAttctaatc
i panPan2.chr3                 C 0 I 1
s gorGor5.CYUI01015020v1            8285 16 +  12760026 TTACTAAATTCTAATC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121435 16 -  86207423 TTACTAAATACTAACC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276868 12 - 204787373 TTACTAAATTCT----
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176092 12 - 192460366 TTACTAAATTCT----
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195560 12 -  11645122 TTACTAAATTCT----
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180794 12 -   6739814 TTACTAAATTCT----
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71407 12 - 101219884 TGACTAAATTCT----
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192969 12 -    785044 TTACTAAATTCT----
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937661 16 -  13128814 TTACTAAATTCTAATC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668728 16 +  14377064 TTTCTAAATTCTAATC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136478 16 -   9889416 TTACAAAATTCTAATC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20767132 12 +  38779656 TTACTGAATTCT----
i otoGar3.GL873528             I 259 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6698003  0 +   6883506 C

a score=706488.000000
s hg38.chr14_GL000009v2_random    191256 110 +    201709 AATCAATTGAttgacta-tttttatccctggctcaatgtaactctctttgacatactcttgt----cttaattcta---------atttaagtcaacaatgtgtaatcatagatgactccttgc
s panTro5.chr9                  41881200 115 + 116767853 AATC----GAttgacta-tttttatccctggctcaatgtaactctctttgacatactcttgt----cttaattctagtttatgtcatttatgtcaacaatgtgtaatcatagatgactctttgc
i panTro5.chr9                 C 0 C 0
s gorGor5.CYUI01015020v1            8301 105 +  12760026 AATCAACTGATTGACTA-Tttttat-cctggctcaatgtaactc----tgacatactcttct----cttaattcta---------gtttatgtcaacaatgtgtaatcatagatgactcttttt
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121451 106 -  86207423 AATCAATTGAttgacta-tttttatccctggctcaatgtaactc----tgacatactcttgt----ctcaattcta---------gtttatgtcaacaatgtgtcatcacagatgactctttgt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276880 110 - 204787373 AATCAATTGAttgacta-tttttatctctggctcaaagtaactctctttgacatactcttgt----cttaattcta---------gtttatgtcaacaatgtataatcatagatgactctttgt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176104 110 - 192460366 AATCAATTGAttgacta-tttttatctctggctcaaagtaactctctttgacatactcttgt----cttaattcta---------gtttatgtcaacaatgtataatcatagatgactctttgt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195572 114 -  11645122 AATCAATTGAttgacta-tttttatctctggctcaaagtaactctctttgacatactcttgtcttacttaattcta---------gtttatgtcaacaatgtataatcatagatgactctttgt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180806 110 -   6739814 AATCAATTGAttgacta-tttttatctctggctcaatgtaactctctttgacatactcttgt----cttaattcta---------gtttatgtcaacaatgtataatcatagatgactctttgt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71419 110 - 101219884 AATCAATTGAttgacta-tttttatctctggctcaatgtaactctctttgacatactcttgt----cttaattcta---------gtttacgtcaacaatgtataatcatagatgactctttgt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          192981 110 -    785044 AATCAATTGAttgacta-tttttatctctggctcaatgtaactctctttgacatactcttgt----cttaattcta---------gtttatgtcaacaatgtataatcatagatgactctttgt
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937677 107 -  13128814 AACCAACTGAttgacagttttttatccctggctcaatgtaactc----tgacatactgttgt----cttaattcta---------gtgtatgtcaacaatgtgtaatcatagatgactctttgt
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668744 110 +  14377064 AACCAACTGAttgacag-tttttatccctggctcaatgtaactctctttgacatactattgc----cttaattcta---------gtttatgtcaacaatttgtaatcatagatgactctttgt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136494 110 -   9889416 AACCAACCGAttgacag-tttttatccctggctcaatgtaactctctttggcatactgttgt----cttaattcta---------gtttatgtcgacaacgtgtaatcatagatgactctttgt
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20767144  84 +  38779656 AACCAATTGAttgacaa-tttttacctcttgttcaatgtaactctctcccacatactc--------cttagttcta---------gttgacatgaatattgt----------------------
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055   0 -  10971483 C
e dasNov3.JH568778               6698003   0 +   6883506 C
e panPan2.chr3                  77848691   1 + 205426864 I

a score=3505889.000000
s hg38.chr14_GL000009v2_random    191366 446 +    201709 cattttgatctctcagttctatgaacacctttgatctaacaataatgttttccaACAGAATTAtttctact--caaacttctgagatcaaatttgtggattcagtctcaccccaatcaattcttcaa--------ctctcaggacaccaaatggtgtcctacaattcaattcaatcctgagtctatctatctggagatagcat-agatcccaaaagttcagggctcaggcccacaagac---tgcccccac----accattagagaggagttgtgggcctcccatactcctgaccaactgtc-----tataaattaggacctccatggattccttcctcaggttctataatttgctaagatggcgcacagaacccaagaaagcactttg-ttacagttactgtct----------gatacaaatcaggaactctcaaatagaagagacacatagggccaggtatggtgaaaaggggcaca----
s panTro5.chr9                  41881315 448 + 116767853 cattttgatctctcagttctattaacacctttgatctaatgataatgttttccaACAGAATTAtttctact--caaacttctgagatgaaatttgtggatttagtctcaccccaatcaatttttcaa--------ctctcaggacaccaaatggtgtcctacaattcaattcaatcctgagactatctatctggagatagcatcagatcccacaagttcagggttcaggcccacaagac---tgccccccc----accattagagaggagttgtgggcctcccatactcatgaccaactggc-----tataaattagggcttccatggattccttccccaggttctataatttgctaagatggcgcacagaacccaagaaagcactttgcttacagttactgtct----------gatataattcaggaactgtcaaatagaagagacacataggaccaggtatggtgaaaaggggcaca----
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77848692 452 + 205426864 catcttgatctctcagttctatgaacacctttgatctaatgataatgttttccaacagaattgtttctact--caaacttctgagatcaaatttgtggatttagtctcaccccaaccaattcttcaa--------ctctcaggacaccaactggtgtcctacaattcaattcaatcctgagactatctatctggagatagcatcagatcccacaagttcagggttcagacccacaagac---tgccccccccacaaccattagagatgagttgtgggcctcccacactcctgaccaactggc-----tgtaaattaggacttccatggattccttccccaggttctatactttgctaagatggctcacagaacccacgaaagcactttgcttacatttactgtct----------gatacaaatcaggaatagtcaaatagaagacacacatcgggccaggtatggtgaaaagggacaca----
i panPan2.chr3                 I 1 C 0
s gorGor5.CYUI01015020v1            8406 451 +  12760026 catcttgatctctcagttctacgaacacctttgatctaatgataatgttttccaacagaattgtttctact--caaacttctgagatcaaatttgtggatttagtctcaccccaaccaattcttcaa--------ctctcaggacaccaactggtgtcctacaattcaattcaatcctgagactgtctatctggagatagcatcagatcccacaagttcagggttcagacccacaagac---tgccccccc-acaaccattagagacgagttgtgggcctcccacactcctgaccaactggc-----tataaattaggacttccatggattccttccccaggttctataatttgctaagatggctcacagaacccacgaaagcactttgcttacttttactgtct----------gatacaaatcaggaatagtcaaatagaagacacacatcgggccaggtatggtgaaaagggacaca----
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42121557 450 -  86207423 catcttgatctctcggttctatgaacacctttgatctaatgacaatgttttccaATAGAATTGCTtctact--caaacttctgagatctactttctggatttagtctcgccccaatcaattcttcaa--------ctctcaggacaccaactggtgtcctacaattcaattcaatcctgagactgtctatctggagatagcttcagatcccacaagttcagggttcaggcccacaagac---tgcccccct--ccaccgttagagacgagttgtgggcctcccatactcctgaccaactggc-----tataaattaggacttccatggattccttccccaggttctataatttgctaagacggctcacagaacccaagaaagcactttgcttacagttactgtct----------gatacaaatcaggaacagtcaaatagaagagacacatagggccaggtatggtgaaaaggggcaca----
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204276990 446 - 204787373 catcttgttctctcagttctatgaacacctttgatctaatgataatgttttccaACAGAATTGTTTCTATT--Caaacttctgagatcaaatttgtggatttagtctcaccccaaccaattcttcaa--------ttctcaggacaccaactggtgtcctacagttcaattcaatcctgaggctatctatctggagatagcatcagatcccatgagttcagggttcagtcccacaagac---tgcccccga------cattagagaccagctgtgggcctcccatactcctgaccaactggc-----tagaaattaggacttccatggattccttccccaggttctataatgtgctaggatggctcacagaacccaagaaagcgttttgcttatatgtactgtct----------gatacaaatcaggaacagtcaaatagaagagacacatagggccaggtatggtgaaaaggggcacg----
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176214 446 - 192460366 catcttgttctctcagttctatgaacacctttgatctaatgataatgttttccaACAGAATTGTTTCTATT--Caaacttctgagatcaaatttgtggatttagtctcaccccaaccaattcttcaa--------ttctcaggacaccaactggtgtcctacagttcaattcaatcctgaggctatctatctggagatagcatcagatcccatgagttcagggttcagtcccacaagac---tgcccccga------cattagagaccagctgtgggcctcccatactcctgaccaactggc-----tagaaattaggacttccatggattccttccccaggttctataatgtgctaagatggctcacagaacccaagaaagcgttttgcttatatgtactgtct----------gatacaaatcaggaacagtcaaatagaagagacacatagggccaggtatggtgaaaaggggcacg----
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          195686 446 -  11645122 catcttgttctctcagttctatgaacacctttgatctaatgataatgttttccaacagaattgtttctatt--caaacttctgagatcaaatttgtggatttagtctcaccccaaccaattcttcaa--------ttctcaggacaccaactggtgtcctacagttcaattcaatcctgaggctatctatctggagatagcatcagatcccatgagttcagggttcagtcccacaagac---tgcccccga------cattagagaccagctgtgggcctcccatactcctgaccaactggc-----tagaaattaggacttccatggattccttccccaggttctataatgtgctaggatggctcacagaacccaagaaagtgttttgcttatatgtactgtct----------gatacaaatcaggaacagtcaaatagaagagacacatagggccaggtatggtgaaaaggggcacg----
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          180916 446 -   6739814 catcttgttctctcagttctatgaacacctttgatctgatgataatgttttccaacagaattgtttctatt--caaacttctgagatcaaatttgtggatttagtctcaccccaaccaattcttcaa--------ttctcaggacaccaactggtgtcctacagttcaattcaatcctgaggctatctatctggagatagcattagatcccacgagttcagggttcagtcccacaagac---tgcccccga------catcagagaccagctgtgggcctcccatacgcctgaacaactggc-----tataaattaggacttccatggattccttccccagattctataatgtgctaggatggctcacagaacccaagaaagcattttgcttatatgtactgtct----------gatacaaatcaggaacagtcagatagaagagacacatagggccaggtatggtgaaaaggggcacg----
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71529 446 - 101219884 catcttgttctctcagttctatgaatacctttgatctaatgataatgttttcaaacagaattgtttctatt--caaacttctgagatcaaatttttagatttagtctcaccccaaccaattcttcag--------ctctcaggacaccaactggtgtcctacaattcaattcaatcctgaggctatctatctggagatagcattagatcccacgagttcagggttcagtcccacaagac---tgcccccga------cattagagaccagctgtgggcctcccatactcctgaccaactggc-----tagaaattaggacttccatggattccttccccaggttcgataatgtgctaggatggctcacagaacccaagaaagcattttgcttatatgcactgtct----------gatacaaatcaggaacagtcaaatagaagagacacatagggccaggtatggtgaaaaggggcacg----
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          193091 454 -    785044 catcttgttctctcagttctatgaacacctttgatctgatgataatgttttccaACAGAATTGTTTCTATT--Caaacttctgagatcaaatttgtggatttagtctcaccccaaccaattcttcagttcttcaattctcaggacaccaactggtgtcctacagttcaatttaatcctgaggttatctatctggagatagcatcagatcccacgagttcagggttcagtcccacaagac---tgcccccga------catcagagaccagctgtgggcctcccatactcctgaccaactggc-----tataaattaggacttccatggattccttccccagattctataatgtgctaggatggctcacagaacccaagaaagcattttgcttatatgtactgtct----------gatacaaatcaggaacagtcaaatagaagagacacatagggccaggtatggtgaaaaggggcacg----
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10937784 431 -  13128814 tatcttgatctctcaattctatgaacacctctgatctaatggtaatgttttccaACAGTATTGTTTTTACT--CAATcttctgagatcaagtttgtggatttagtctcaccccaaccaattctccaa--------ctctcaggtcaccagttggtgtccta----------caatcctgagactatctgtctggagacga-----gatcccacaagttcagggttcagtcccacaagac---tgcctcccc------cattagcaatcagtcacaggcctctcatacttctgaccaactggc-----tataaatgagaagttccatggattgcttccccaggtcgtgtaatttgctagaatggctcacagaacccaagaaagcactttgcttatatttactctct----------gatataaatcaggaacagtcaaatggaagaggcacatagggcaaggtatgatgaaaagtggcaca----
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7668854 446 +  14377064 catcttgatctctcaattctatgaatacctccgatctaatggtaatgttttccaACATTATTGTTTTTACT--CAATcttctgagatcaaatttgtggatttagtctcaccccaaccaattctccaa--------ctctcgggtcaccaattggtgtcctacaattcaattcaatcctgagactatctatctggagatagcatccgattccacaagttcaaggttcagtcccacaagac---tgcctcccc------cattagaaaccagtcatgggcctctcatacttctgaccaactggc-----tataaattagaaattccatggattgcttccccaggtcctataatttgctagaatggctcacagaacccaagaaagcactttgcttatatttactctct----------gatataaatcaggaacagtcaaatggaagaggcacatagggcaaggtatgatgaaaagtggcaca----
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4136604 446 -   9889416 catcttgatctctcaactctatgaacacctctgatctaatggtaatgtttcccaACAGTattgtttttact--cactcttctgagatcaaatttgtggatttagtgtcaccccaaccaattctccaa--------ctctcaggtcaacaattggtgtcctacaattcaattcaatcctgagactatctatctggagatagcatcagatcccacaagttcagggttcagtcccacaagac---tgcctcccc------cattagaaaccagtcatgggcctctcatacttctgaccaactggc-----tataaattagaagttccatggattgcttccccaggtcctataatttgctagaatggctcacagaacccaagaaagcactttgcttatatttactctct----------gatataaatcaggaacagtcaagtggaagagacacatagggcaaggtatgatgaaaagtggcaca----
i aotNan1.NW_018487195v1       C 0 I 202
s otoGar3.GL873528              20767228 460 +  38779656 catcttgaccttgccattcgttgaactcct--gctctaatgatcatgtcacccaccTGaactgtttctactcacaacactctgaaactaaacgtgtgagtgaggtctcacactagctaattcttcaa--------ttctcaggacaccactttgtgtcctaccattcaattcagttcag------tctacctagagatagtgtcagatcccacaatttaaggactcagtcgtacaatacttgtgccccctc----cccattagacagcaatttcaggcttcctgtgcttctgagaaactgtcctgggtataaatcaggagttcccagaaccccttctccaggttccataatttgctagaatgaatcacagaactcaaaaaagcactttatattcatttactggcttaaaataaaggatacaactcag----agtcaaatggaagagatgcatagggcagggtataagggaaagaagaaagcaaa
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055   0 -  10971483 C
e dasNov3.JH568778               6698003   0 +   6883506 C

a score=40863.000000
s hg38.chr14_GL000009v2_random    191812 10 +    201709 aagctgccat
s panTro5.chr9                  41881763 10 + 116767853 aagctgccat
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77849144 10 + 205426864 aagctgccat
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8857 10 +  12760026 aagctgccat
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42122007  1 -  86207423 a---------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204277436 10 - 204787373 tcactgccat
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176660 10 - 192460366 tcgctgccat
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          196132 10 -  11645122 tcgctgccat
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          181362 10 -   6739814 tcgctgccat
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    71975 10 - 101219884 tcgctgccat
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          193545 10 -    785044 tcgctgccat
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10938215 10 -  13128814 gagctgccat
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7669300 10 +  14377064 gagctgccat
i cebCap1.NW_016107322v1       C 0 I 329
s otoGar3.GL873528              20767688 10 +  38779656 gagctttcat
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4137050 202 -   9889416 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6698003  0 +   6883506 C

a score=166840.000000
s hg38.chr14_GL000009v2_random    191822 39 +    201709 atgacctc-taagtatatcattctatcaccctcccagcac
s panTro5.chr9                  41881773 39 + 116767853 atgacctc-taagtatataattgtatcaccctcccagcac
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77849154 39 + 205426864 atgccctc-tgggtatatcattgtgtcaccctcccagcac
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8867 39 +  12760026 atgccctc-tgggtatatcattgtgtcaccctcccagcac
i gorGor5.CYUI01015020v1       C 0 C 0
s rheMac8.chr2                 204277446 39 - 204787373 atgccctc-tgggcatatcattgcgtcaccctcccagcac
i rheMac8.chr2                 C 0 I 141
s macFas5.chr2                    176670 39 - 192460366 atgccctc-tgggcatatcattgcgtcaccctcccagcac
i macFas5.chr2                 C 0 I 141
s macNem1.NW_012010856v1          196142 39 -  11645122 atgccctc-tgggcatatcattgtgtcaccctcccagcac
i macNem1.NW_012010856v1       C 0 I 141
s cerAty1.NW_012001605v1          181372 39 -   6739814 atgccctc-tgggcatatcattgcgtcaccctcccagccc
i cerAty1.NW_012001605v1       C 0 I 141
s chlSab2.chr22                    71985 39 - 101219884 atgccctc-tgggcatatcattgcgtcaccctcccagcac
i chlSab2.chr22                C 0 I 141
s manLeu1.NW_012099043v1          193555 39 -    785044 atgccctc-tgggcatatcattgcgtcaccctcccagcac
i manLeu1.NW_012099043v1       C 0 I 141
s saiBol1.JH378168              10938225 31 -  13128814 ggctcctc-tgggtgtaccat--------cctcccgacac
i saiBol1.JH378168             C 0 C 0
s otoGar3.GL873528              20767698 34 +  38779656 --gttctcacgggagtacca----accaccctcccagcac
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4137050 202 -   9889416 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055  0 -  10971483 C
e dasNov3.JH568778               6698003  0 +   6883506 C
e cebCap1.NW_016107322v1         7669310 329 +  14377064 I
e nomLeu3.chr21                 42122008  0 -  86207423 C

a score=11385.000000
s hg38.chr14_GL000009v2_random    191861 3 +    201709 --ctc
s panTro5.chr9                  41881812 3 + 116767853 --ctc
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77849193 3 + 205426864 --ctc
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8906 3 +  12760026 --ctc
i gorGor5.CYUI01015020v1       C 0 C 0
s rheMac8.chr2                 204277626 3 - 204787373 --ctc
i rheMac8.chr2                 I 141 C 0
s macFas5.chr2                    176850 3 - 192460366 --ctc
i macFas5.chr2                 I 141 C 0
s macNem1.NW_012010856v1          196322 3 -  11645122 --ctc
i macNem1.NW_012010856v1       I 141 C 0
s cerAty1.NW_012001605v1          181552 3 -   6739814 --ctc
i cerAty1.NW_012001605v1       I 141 C 0
s chlSab2.chr22                    72165 3 - 101219884 --ctc
i chlSab2.chr22                I 141 C 0
s manLeu1.NW_012099043v1          193735 3 -    785044 --ctc
i manLeu1.NW_012099043v1       I 141 C 0
s saiBol1.JH378168              10938256 3 -  13128814 --ctc
i saiBol1.JH378168             C 0 C 0
s otoGar3.GL873528              20767732 3 +  38779656 tgc--
i otoGar3.GL873528             C 0 I 135
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4137050 202 -   9889416 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055 0 -  10971483 C
e dasNov3.JH568778               6698003 0 +   6883506 C
e cebCap1.NW_016107322v1         7669310 329 +  14377064 I
e nomLeu3.chr21                 42122008 0 -  86207423 C

a score=6006.000000
s hg38.chr14_GL000009v2_random    191864 1 +    201709 a
s panTro5.chr9                  41881815 1 + 116767853 a
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77849196 1 + 205426864 a
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8909 1 +  12760026 a
i gorGor5.CYUI01015020v1       C 0 C 0
s rheMac8.chr2                 204277629 1 - 204787373 a
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176853 1 - 192460366 a
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          196325 1 -  11645122 a
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          181555 1 -   6739814 a
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    72168 1 - 101219884 a
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          193738 1 -    785044 a
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10938259 1 -  13128814 a
i saiBol1.JH378168             C 0 I 187
s otoGar3.GL873528              20767870 1 +  38779656 a
i otoGar3.GL873528             I 135 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4137050 202 -   9889416 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055 0 -  10971483 C
e dasNov3.JH568778               6698003 0 +   6883506 C
e cebCap1.NW_016107322v1         7669310 329 +  14377064 I
e nomLeu3.chr21                 42122008 0 -  86207423 C

a score=16005.000000
s hg38.chr14_GL000009v2_random    191865 3 +    201709 gag
s panTro5.chr9                  41881816 3 + 116767853 gag
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77849197 3 + 205426864 gag
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8910 3 +  12760026 gag
i gorGor5.CYUI01015020v1       C 0 C 0
s rheMac8.chr2                 204277630 3 - 204787373 gag
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176854 3 - 192460366 gag
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          196326 3 -  11645122 gag
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          181556 3 -   6739814 gag
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    72169 3 - 101219884 gag
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          193739 3 -    785044 gag
i manLeu1.NW_012099043v1       C 0 C 0
s otoGar3.GL873528              20767871 3 +  38779656 gag
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4137050 202 -   9889416 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055 0 -  10971483 C
e dasNov3.JH568778               6698003 0 +   6883506 C
e cebCap1.NW_016107322v1         7669310 329 +  14377064 I
e saiBol1.JH378168              10938260 187 -  13128814 I
e nomLeu3.chr21                 42122008 0 -  86207423 C

a score=633423.000000
s hg38.chr14_GL000009v2_random    191868 105 +    201709 gtgatggaggagagggctgacagtttcaaccatctagttatgccttcatgtttctgatgtccagcacacaccctgaagcta--tacggg-tctccag--ccaccactcat
s panTro5.chr9                  41881819 105 + 116767853 gtgatggaggagagggctgacagtttcaaccatctagttatgccttcatgtttctggtgtcgagcacccaccctgaagcta--tacggg-tctccag--ccaccactcat
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77849200 105 + 205426864 gtgatggaggagagggctgacagtttcaaccatctagttatgccttcatctttctggtgtccagcacccaccctgaagcta--tacggg-tctgtag--ccaccagtcat
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            8913 105 +  12760026 gtgacggaggagagggctgacagtttcaaccatctagttatgccttcatctttctggtgtccagcacccaccctgaagcta--tacggg-tctgtag--ccaccagtcat
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42122008  95 -  86207423 ----------agAgggccgacagtttcaactatctagttaggccttcatctttctggtgtccagcacccaccctgaagctc--tacggg-tctccag--ccaccactcat
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204277633 106 - 204787373 gtgatggaggagagggctgacagtcccaacaatctagttatgccttcatctctctggtgcccagcaccggccctgaagcta--tgcggg-tctccagc-ccaccagtcat
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176857 106 - 192460366 gtgatggaggagaaggctgacagtcccaacaatctagttatgccttcatctctctggtacccagcacccgccctgaagcta--tgcggg-tctccagc-ccaccagtcat
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          196329 106 -  11645122 gtgatggaggagagggctgacagtcccaacaatctagttatgccttcatctctctggtgcccagcacccgccctgaagcta--tgcggg-tctccagc-ccaccagtcat
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          181559 106 -   6739814 gtgatggaggagagggctgacagtcccaacaatctagttatgccttcatctctctggcgcccagcacccgccctgaagcta--tgcggg-tctccagc-ccaccagtcat
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    72172 106 - 101219884 gtgatggaggagagggctgacagtcccgacaatctagttatgccttcatctctctggtgcccagcacccgccctgaagcta--tgcggg-tctccagc-ccaccagtctt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          193742 106 -    785044 gtgatggaggagagggctgacagtcccaacaatctagttatgccttcatctctctggcgcccagcacccgccctgaagcta--tgtggg-tctccagc-ccaccagtcat
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10938447 102 -  13128814 gtgatggaggagaggggtgacagttccaacaatctagttatgccttcatctttctggtgtccagtacctatcctgaaaccatctacagg-tctccag--acacta-----
i saiBol1.JH378168             I 187 C 0
s aotNan1.NW_018487195v1         4137252 102 -   9889416 gtgatggaggagaggggtgacagttccaacagtctagttatgccttcatctttctggtgtccagtacctatcctgaaactatctacagg-tctccag--acacta-----
i aotNan1.NW_018487195v1       I 202 C 0
s otoGar3.GL873528              20767874  92 +  38779656 gtgaagagggaaggg-----------caaccttctaatcatgctttggtctttctggtgactagcacacctcctaaagcta--tccaggagctttagcaccccca-----
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055   0 -  10971483 C
e dasNov3.JH568778               6698003   0 +   6883506 C
e cebCap1.NW_016107322v1         7669310 329 +  14377064 I

a score=1232794.000000
s hg38.chr14_GL000009v2_random    191973 157 +    201709 gtcatgtcaatagcataAACTCAGGTATGGCTAAGAGAGACTTA---TGACTAGTaaaggatggtcctctcatctcta----tcaggaaatttcaag--ttttaggagctctgtactgtgaactggggaggaagaccaaat---------aGGACATACACTAG--------------ACcagttgtgc-----
s panTro5.chr9                  41881924 157 + 116767853 gtcatgtcaatagcataAACTCAGGTATGGCTAAGAGGGACTTA---TGACTAGTaaaggatggtcctctcatctcta----tcaggaaatttcaag--ttttaggagctctgtactgtgaaccggggaggaagaccaaat---------aGGACATACACTAG--------------ACcagttgtgc-----
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77849305 157 + 205426864 gtcatgtcaatagcataAACTCAGGTATGGCTAAAAGGGACTTA---TGACTAGTaaaggatggtcctctcatctcta----tcaggaaatttcaag--ttttaggaactctgtaccatgaactggggaagaagaccaaat---------aGGACATACCCTAG--------------ACcagttgtgc-----
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            9018 157 +  12760026 gtcatgtcaatagcataaactcaggtatggctaaaaggaactta---tgactagtaaaggatagtcctctcatctcta----tcaggaaatttcaag--ttttaggaactctgtaccatgaactggggaggaagaccaaat---------aGGACATACCCTAG--------------ACcagttgtgc-----
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42122103 156 -  86207423 gtcatgtcaatagcataaactcaggtatggctaaaagggactta---tgactagtaaa-gatggccctctcatctcta----ccaggatatttcaag--ttttaggggctctgtacagtgaactggggaggaagaccaaat---------aGGACCTACCCTAG--------------ACcagttgtgc-----
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204277739 159 - 204787373 gtcatgccaatagcataAACTCAGGTGTGGCTAAAAGGGACTTG---TGACTAGTaaagggtggtcctctcatcccta----tcgggaaatttcaagagttttaggagctctgcaccatgaactggggaggaagaccaaat---------agaacaTACCCTAG--------------ACCGGTTGTGC-----
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    176963 159 - 192460366 gtcatgccaatagcataaactcaggtgtggctaaaagggacttg---tgactagtaaagggtggtcctctcatcccta----tcgggaaatttcaagagttttagcagctctgcaccatgaactggggaggaagaccaaat---------aGAACATACCCTAG--------------ACCGGTTGTGC-----
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          196435 159 -  11645122 gtcatgccaatagcataaactcaggtgtggctaaaagggacttg---tgactagtaaagggtggtcctctcatcccta----tcgggaaatttcaagagttttaggagctctgcaccatgaactggggaggaagaccaaat---------aGAACATACCCTAG--------------ACCGGTTGTGC-----
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          181665 159 -   6739814 gtcatgccaatagcataaactcaggtgtggctaaaagggacttg---tgactagtaaagggtggtcctctcatcccta----tcaggaaatttcaagagttttaggagctctgcaccatgaactggggaggaagaccaaat---------agaacaTACCCTAA--------------ACcagttgtgc-----
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    72278 159 - 101219884 gtcatgccaacagcataaactcaggtgtggctaaaagggacttg---tgactagtaaagggtggtcctctcatcccta----tcaggaaatttcaagagttttaggagctctgcaccatgaactggggaggaagaccaaat---------agaacaTACCCTAG--------------ACcagttgtgc-----
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          193848 159 -    785044 gtcatgccaatagcataAACTCAGGTGTGGCTAAAAGGGACTTG---TGACTAGTaaagggtggtcctctcatcccta----tcaggaaatttcaagacttttaggagctctgcaccacgaactggggaggaagaccaaat---------agaacaTACCCTAA--------------ACcagttgtgc-----
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10938549 163 -  13128814 gtcatatcaatagcataaacttaggtatggttcaaagggactta---tgactagtaaaggatggccctctcatccctgtcattcaggagattacaagagttttaggagctctgtaccatgaactgggaaggaagaccaaat---------aggttataacctag--------------accagtggtgc-----
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7669639 163 +  14377064 gtcacgtcaatagcataaactcaggtatatcgaaaaggcactta---tgactagtaaaggaaggccctctcatccctatcattcaggagattacaagagttttaggagctgtgtaccatgaactggggaggaagaccaaat---------aggtcataacctag--------------accagtggtgc-----
i cebCap1.NW_016107322v1       I 329 C 0
s aotNan1.NW_018487195v1         4137354 163 -   9889416 gtcatgtcaatagcataaactcaggtatggctaaaagggactta---tgactagtaaaggatggtcctctcatccctatcattcaggagattacaagagttttaggagctctgtaccatgaactggggaggaagaccaaat---------aggtcataacctag--------------accagtggtgc-----
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20767966 192 +  38779656 gccatttcattagcataaactcaggtatggttgaaagagatttattgtgaataacaaaggatgttccttttattcccatcacttgtgaaattgcaaggactttaggaactctgcaccaggaactggggagaaggaccaaatatatatttcatattatatcataatgtcTCTTCCCCTTACC--TTGGGCACTCC
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e colAng1.NW_012123820v1           82055   0 -  10971483 C
e dasNov3.JH568778               6698003   0 +   6883506 C

a score=3060884.000000
s hg38.chr14_GL000009v2_random    192130 328 +    201709 -taactacagtgtgcctcaaaattgcctacagttgtgttacaataaaagattgctgagacctgctattggaatttcagatttggtagatctggggctgtaacctgagaatatgcacttctagtaagttcccaggtgatgctgatgctgctagcacagggaccacacttccagaCGGACTGAGTGAAGCAtcgtcattacttataataggaactt-----ctctgtagtcacaattttattcatcccattctctgagctcctcctttaatcattccctttcatatgctgac-ataaaatttttcaatctctctgagacctccaaactattatttta
s panTro5.chr9                  41882081 328 + 116767853 -taactactgtgtgcctcaaaattgcctacagttgtgttacaataagagattgctgagacctgctattggaatttcagatttggtagatctgggggtgtaacctgagaatatgcagttctagtaagttcccaggtgatgctgttgctgctagcacagggaccacacttccagagggactgAGTGAAGCAtcgtcgttacttataatagcaactt-----ctctgtagtcacaatttcattcatcccattctctgagctcctcctttaatcattccctttcatacgctgac-ataaaatttttcaatctctctgagacctccaaactattatttta
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77849462 328 + 205426864 -taactactgtgtgcctcaaaattgcctacagttgtgttaaaataagagattgctgaggcctgctattggaatttcagatttggtagatctgggggtgtaacctgagaatatgcagttctagtaagttcccaggtgatgctgatgctgctagcacagggaccacacttccagaaggactgAGTGaaacatcgtcattacttagaacagcaactt-----ctctctagtcacaatttcatttatcccattctctgtgctcctcctataatcattcccattcataccctgac-ataaaatctttcaatctctctgagacctccaaactattatttta
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            9175 328 +  12760026 -taactactgtgtgccttaaaattgcctacagttgtgttaaaataagagattgctgaggcctgctattggaatttcagatttggtagatctgggggtgtaacctgagaatatgcagttctagtaagttcccaggtgatgctgatgctgctagcacagggaccacacttccagaaggactgAGTGAAGCAtcgtcattacttataacagcaactt-----ctctgtagtcacaatttcatttatcccattctctgagctcctcctttaatcattcccattcataccctgac-ataaaatctttcaatctctctgagacctccaaactattatttta
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42122259 328 -  86207423 -taactactgtgtgcctcaaaattgcctacagttgtgttaaaataagagattgctgagacctgctattggaatttcagatttggtagatctgggggtgtaacctgataatttgcagttctagtaagttcccaggtgatgctgatgctgctagcacagggaccacacttccagaaggactgAGTGAAGCGttgtcattacttataatagcaactt-----ctctgtagtcacaatttcattcatcccattctctgagctcctcctttaatcattccctttcatatactgac-ataaaatttttcaatctctctgagacctccaaactattatttta
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204277898 326 - 204787373 -TAACTACTgtgtgcctcaaaattgcctacagttgtgttaaaat--gagatcgctgaggcctgctcttagaatttcaggtttggtagatctgggggtgtaacctgagaatatgcagttctggtaagttcccaggtgatgctgatgctgccagcacagagaccacatttccagaaggactgAGTGAAGCAtcgtcattacttacaatagcaactt-----ctctgtagtcacaacttcattcatcccattctctgagctcctcctttaatcattccctttcataccctgac-ataaaatctttcaatctctctgagacctccaaactattatttta
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    177122 326 - 192460366 -TAACTACTgtgtgcctcaaaattgcctacagttgtgttaaaat--gagattgctgaggccttttcttagaatttcaggtttggtagatctgggggtgtaacctgagaatatgcagttctggtaagttcccaggtgatgctgatgctgccagcacagagaccacacttccagaaggactgAGTGAAGCAtcgtcattacttacaatagcaattt-----ctctgtagtcacaacttcattcatcccattctctgagctcctcctttaatcattccctttcataccctgac-ataaaatctttcaatctctctgagacctccaaactattatttta
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          196594 326 -  11645122 -TAACTACTgtgtgcctcaaaattgcctacagttgtgttaaaat--gagattgctgaggcctgctcttagaatttcaggtttggtagatctgggggtgtaacctgagaatatgcagttctggtaagttcccaggtgatgctgatgctgccagcacagagaccacacttccagaaggactgAGTGAAGCAtcgtcattacttacaatagcaactt-----ctctgtagtcacaacttcattcatcccattctctgagctcctcctttaatcattccctttcataccctgac-ataaaatctttcaatctctctgagacctccaaactattatttta
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          181824 325 -   6739814 -taactactgtgtgcctcaaaattgcctacagttgtgttaaaat--gagattgctgaggcctgctcttagaatttcaggtttggtagatctgggggtgtaccctgagaatatgcagttctggtaagctcccaggtgatgctgatgctgccagcacagagaccacacttccagaaggactgAGTGAAGCAtcgtcattacttataatagcaactt-----ctctgtagtcacaacttcattcatcccattctctgagctcctcctttaatcatt-cctttcataccctgac-ataaaatctttcaatctctctgagacctccaaactgtcatttta
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    72437 326 - 101219884 -taactactgtatgcctcaaaattgcctacagttgtgttaaaat--gagattgctgaggcctgctcttagaatttcagatttggtagatctgggggtgtaacctgagaatatgcagttctggtaagctcccaggtggtgctgatgctgccaacacagagaccacacttccagaaggactgAGTGAAGCAtcgtcattacttataatagcaactt-----ctctgtagtcacaacttcattcatcccgttctctgagctcctcctttaatcattccctttcataccctgac-ataaaatctttccatctctctgagacctccaaactattatttta
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          194007 326 -    785044 -taactactgtgtgcctcaaaattgcctacagttgtgttaaaat--gagattgctgaggcctgctcttagaatttcaggtttggtagatctgggggtgtaacctgagaatatgcagttctggtaagttcccaggtgatgctgatgctgccagcacagagaccacacttccagaaggactgAGTGAAGCAtcgtcattacttataatagcaactt-----ctctgtagtcacaacttcattcatcccattctctgtgctcctcctttaatcattccctttcataccctgac-ataaaatctttcaatctctctgagacctccaaactatcatttta
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           82055 324 -  10971483 -TAACTACTgtgtgcctcaaaattgcctacagttgtgttaaaat--gagattgctgaggcctgctcttagaatttcagatttggtagatctgggggtgtaacctgagaatatgcagttctggtaagttcccaggtgacgctgatgctgccagcacagagaccagacttccagaatgactgAGTGAAGCAtcgtcattacttacaatagcaactt-----ctc--tagtcacagcttcattcatcccattctctgagctcctcctttaatcattccctttcataccctgac-ataaaatctttcagtctctctgagacctccaaactattatttta
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10938712 328 -  13128814 -taactactgtgtgcctcaaaattgcctacagttgtgttaaaataagagattgctgagtcctactcttgaaatttcagatttggtagttctaggggtgaagcctaagaatatgcagttctagtaagttcccaggtgatgctgatgctgctaacacagtgactgcatttccagaataactgagtgaagcactgtcatttcttatgatggcaactt-----ctctgtagtcacaatttcattcatcccattctccgagcttctcctttaatcattctctttcatatcttgaa-ataaaatctttcaatctctctgaggcctccaaattattatttta
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7669802 328 +  14377064 -taacaactgtgtgcctcaaaattgcctacagttgtgttaaaataagagattgctgagtcctactcttggaatttcagatttggtagttctaggggtgaagcctgagaatatgcagttctagtaagttcccaggtgatgctgatgctgctaacacagtgaccacatttccagaatgactgagcgaagcactgtcatttcttataatggcaactt-----ctctgtagtcacagtttcattcatcccattctctgagcttctcctttaatcattctctatcatatcttgaa-ataaaatctttcaatctctctgagacctccaaactactatttta
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4137517 328 -   9889416 -taactactgtgtgcctcaaaattgcctacagttatgttaaaataagagattgctgagtcctactcttggaatttcagatttggtagttctaggggtgaagcctgagaatatgcagttctagaaagttcccaggtgatgctgatgctgctaacacagtgaccacatttccagaatgactgagcaaagcagtgtcatttcttataatggcaactt-----ctctgtagtcacaatttcattcatcccattctctgagcttctcctttaatcgttctcttgtatgtcttgaa-ataaaatctttcaatctctctgagacctccaaactattatttta
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20768158 332 +  38779656 TTATCACACATAGTCCTCAACATTTTATAAATGTGtgttaaagtgagaggtcattgggttctactcttggagtttctaatatgatggatct-gaaatagagtctgaaaacacccagttctgacaagtttccaggggatgttgatgttgctggcccagaggccacattttCATGATACCTGGCTGagacttcatcattacttatgacagcaatatcatacctct-tattcacaatttcattcactccattctctgagcttctcttttaattgtttgctttaacaccctgactctgagatattttaatgtctccaggaccttcaaatt-ttatctta
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e canFam3.chr31                 28800447 4512 -  39895921 I
e dasNov3.JH568778               6698003   0 +   6883506 C

a score=1057470.000000
s hg38.chr14_GL000009v2_random    192458 109 +    201709 tca--------tattcacaatgacccttacctacttgatgtactctatt-tcctg-ttctcctgcctaaattccatggccaaccattccc----aggaaacttcaacttcctggtttctcttt
s panTro5.chr9                  41882409 108 + 116767853 tca--------tattcataatgacccttacctac-tgatgtactctatt-tcctg-ttctcctgcctaaattccatggccaaccattccc----aggaaacttcaacttccttgtttctcttt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77849790 109 + 205426864 tca--------tattcacaatgacccttacctccttgatgtactctgtt-gcctg-ttctcctgcctaaattccatggccaaccattccc----aggaaacttcaactttcttgtttctcttt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            9503 108 +  12760026 tca--------tattcacaatga-ccttacctccttgatgtactctgtt-gcctg-ttctcctgcctaaattccacggccaaccattccc----aggaaacttcagctttcttgtttctcttt
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42122587 109 -  86207423 tca--------tattcacaatgacctttacctccttgatgtactctatt-gcctg-ttctcctgcctaaattccatggccaaccattccc----aggaaacttcaacttccttgtttctcttt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204278224 109 - 204787373 tca--------tattcacaatgacccttacctccttgagatactctctt-gcctg-ttctcctgcctaaattccatggtcaaccattccc----aggaaacttcgacttccttgtttctcttt
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    177448 109 - 192460366 tca--------tattcacaatgacccttacctccttgaggtactctctt-gcctg-ttctcctgcctaaattccatggtcaaccattccc----aggaaacttcgacttccttgtttctcttt
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          196920 109 -  11645122 tca--------tattcacaatgacccttacctccttgaggtactctctt-gcctg-ttctcctgcctaaattccatggtcaaacattccc----aggaaacttcgacttccttgtttctcttt
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          182149 109 -   6739814 tca--------tattcacaatgacccttacctccttgaggtactctctt-gcctg-ttctcctgcctaaattccatggtcaaccattccc----aggaaacttcaacttccttgtttctcttt
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    72763 109 - 101219884 tca--------tattcacaatgacccttacctccttgaggtactctctt-gcctg-ttctcctgcctaaattccatggtcaaccattccc----aggaaacttcaacttcctcgtttctcttt
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          194333 109 -    785044 tca--------tattcacaatgacccttacctccttgaggtactctctt-gcctg-ttctcctgcctaaattccatggtcaaccattccc----aggaaacttcaacttccttgtttcttttt
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           82379 109 -  10971483 tca--------tattcacaatgatccttacctccttgaggtactctctt-gcctg-ttctcctgcctaaattccatggtcaaccattccc----aggaaacttcaacttccttgtttctcttt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10939040 107 -  13128814 tca--------tattcacagtgaccctcacctctttggtgtaatt--tt-gcctg-ttctcctgcctaaattccatggccaaacactccc----aggaaacttcagctttcttgtttctcttt
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7670130 105 +  14377064 tta--------tattcacagtgacccttacctccttggtgtaatt--tt-gcctg-ttctcctgcctaaattccatggccaaccattccc----aggaaacttcaactttcttgtt--tcttt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4137845 107 -   9889416 tca--------tattcacagtgacccttacctccttggagtaatt--tt-gcgtg-ttctcctgcttaaattccatggccaaccattccc----aggaaacttcaactttcttgtttctcttt
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20768490 118 +  38779656 tcaaagtcagtttttcacattgacccttactctcttaacataatctttt-gcctatttttcttacctacattccatggtcagtcattttc----atggactcttaaatttcttgtttctcatt
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28804959 113 -  39895921 TCA--------TGCTAAcattgaaccacagtcttttgaggtcatctcttagcctg-ttttcctgcctaaattcca-ggtcaatcaatcccttttgtacatcctcaacttcctcatttcctttt
i canFam3.chr31                I 4512 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e dasNov3.JH568778               6698003   0 +   6883506 C

a score=6020788.000000
s hg38.chr14_GL000009v2_random    192567 613 +    201709  
s panTro5.chr9                  41882517 615 + 116767853  
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77849899 609 + 205426864  
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1            9611 614 +  12760026  
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42122696 594 -  86207423  
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204278333 609 - 204787373  
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    177557 609 - 192460366  
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          197029 609 -  11645122  
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          182258 608 -   6739814  
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    72872 612 - 101219884  
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          194442 611 -    785044  
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           82488 610 -  10971483  
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10939147 622 -  13128814  
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7670235 622 +  14377064  
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4137952 619 -   9889416  
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20768608 630 +  38779656  
i otoGar3.GL873528             C 0 I 481
s canFam3.chr31                 28805072 617 -  39895921  
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6698003 592 +   6883506  
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30887319 2693 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=557233.000000
s hg38.chr14_GL000009v2_random    193180 46 +    201709 --ACTATTATGAACTCCTTGAAG--TAGACCTTAAGCATTCTCATCTGGA
s panTro5.chr9                  41883132 46 + 116767853 --ACTATTATGAACTCCTTGAAG--TAGACCTTAAGCATTCTCATCTAGA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77850508 46 + 205426864 --ACTATTATGAACCCCTTGAAG--TAGACCTTTAGCATTCTCATCTGGA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10225 45 +  12760026 --ACTGTTATGAACCCCTTGAAG--TAGACCTTTAGCATTCTCATCTGG-
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123290 46 -  86207423 --ACTATTATGAACCCCTTGAAG--TAGACCATAAGCATTCTCATCTGGA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204278942 46 - 204787373 --GCTATTATGAGCCCCTTGAAG--TAGACCTTAAGCATTCTCATCTGGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    178166 46 - 192460366 --GCTATTATGAGCCCCTTGAAG--TAGACCTTAAGCATTCTCATCTGGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          197638 46 -  11645122 --GCTATTATGAGCCCCTTGAAG--TAGACCTTAAGCATTCTCATCTGGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          182866 46 -   6739814 --GCTATTATGAGCCCCTTGAAG--TAGACCTTGAGCATTCTCATCTGGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    73484 46 - 101219884 --GCTATTATGAGCCCCTTGAAG--TAGACCTTAAGCATTTTCATCTGGA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195053 46 -    785044 --GCTAATATGAGCCCCTTGAAG--TAGACCTTGAGCATTCTCATCTGGA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           83098 46 -  10971483 --GCTATTATGAGCCCCTTGAAG--TAGACCTTAAGCATTCTCATCTGGA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10939769 46 -  13128814 --ACTATTATAAGCCCCTTAAAG--TAGACCCCAAGCATTCTCATCTGGA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7670857 46 +  14377064 --ACTATTATAAGCCCCTTAAAG--TAGACCTCAAGCATTCTCATCTGGA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4138571 46 -   9889416 --ACTATTATAAGCCCCTTAAAG--TAGACCTCAAGCATTCTCATCTGGA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30890012 46 -  47401472 --aCTATTATGAACCCCTTGAAG--TAGACATTCAGCATTCTCATCTGGA
i micMur3.chr31                I 2693 I 225
s otoGar3.GL873528              20769719 46 +  38779656 --aCTATTGTGGGCCCCGTGAAG--TAGATCTTCAGCATTCTCACCTGGA
i otoGar3.GL873528             I 481 C 0
s canFam3.chr31                 28805689 48 -  39895921 --ACTACTATGAGCACCTTGAAATTTAGACCTTCAGCATTCTTATCCTGG
i canFam3.chr31                C 0 I 2
s dasNov3.JH568778               6698595 33 +   6883506 ATGCTACCA----CCCCCTAAAG-------------CATTCTCATCTAGG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=2016230.000000
s hg38.chr14_GL000009v2_random    193226 223 +    201709 -CAAAT----ATCCATTCATCCACTCCAGTGAGCTGATT------AAGTTTTAGGATTTTAAGGGTCAGTGAACATTTATTCCTCATTCAGCAATTAAAG----AAGGATTAATATGAATATTATCTTGGAGAAGTTTAATTTAAAATATA-------------TTTGAT--------TGAT---------------------------------TTTCGGCAA--TTGTCTTCTATCAGATCATTACCAATCCATATG-AATTGGTAGGAAGGGAGAAAACCCAAAATTTAATC
s panTro5.chr9                  41883178 223 + 116767853 -CAAAT----ATCCATTCATCCACTCCAGTGAGCTGATT------AAGTTTTAGGATTTTAAGGGTCAGTGAACAATTATTACTCATTCAGCAGTTAAAG----AAGGATTAATATGAATATTATATTGGAGAAGTTTCATTTAAAACATA-------------TTTGAT--------TGAT---------------------------------TTTTGGCAA--TTGTCTTCTATCAGATCATTACCAATCCATATG-AGTTGGTAGGAAGGGAGAAAACCCAAAACTTAACC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77850554 223 + 205426864 -CAAAT----ATCCATTCATCCACTCCAGTGAGCTGATT------AAGTTTTAGGATTTTAAGGGTCAATGAACAATTATTCCTCATTCAGCAATTAAAG----AAGGATTAATATGAATATTATCTTGGAGAAGTTTAATTTAAAACATA-------------TTTCAT--------TGAT---------------------------------TTTTGGCAA--TTGTCTTCTATCAGATCATTACCAATCCATATG-AGTTGGGAGGAAGGGAGAAAACCCAAAACTTAATC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10270 223 +  12760026 -CAAAT----ATCCATTCATCCACTCCAGTGAGCTGATT------AAGTTTTAGGATTTTAAGGGTCAATGAACAATTATTCCTCATTCAGCAATTAAAG----AAGGATTAATATGAATATTATCTTAGAGAAGTTTAATTTAAATCGTA-------------TTTCAT--------TGAT---------------------------------TTTTGGCAA--TTGTCTTCTATCAGATCATTACCAATCCATATG-AGTTGGGAGGAAGGGAGAAAACCCAAAACTTAATC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123336 223 -  86207423 -CAAAT----ATCCATTCATCCATACCAGTGAGCTGATT------AAGTTTTAGGGTTTGAAGGGTCAATGAACAATTATTCCTCATTCAGCAATTAAAG----AAGGACTAATATGAATATTATCTTGAAGAAGTTTAATTTAAAATGTA-------------TCTCAT--------TGAT---------------------------------CTTTGGCAA--TTGTCTTCTATCAGATCATTACCAATCAATATG-AGTTGGGAGGAAGGGAGAAAACCCAAAACTTAATC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204278988 226 - 204787373 -CAAATATCCATCCATTCATCCACTCCAGTGAG-TGACT------AAGTGTTAGGATTTTAAGGGTCAATGAACAATTATTCCTCATTCAGCAATCAAAG----GAGGATTAATATGAATGTTATCTTGAAGAAGTTTAATTTAAAACATA-------------TTTTAT--------TGAT---------------------------------CTTTGGCAA--CTGTCTTCTATCAGATCATTACCAATCCATATG-ATTTGGGCGGAAGGGAGAAAACCCAAAACTTAATC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    178212 226 - 192460366 -CAAATATCCATCCATTCATCCACTCCAGTGAG-TGACT------AAGTGTTAGGATTTTAAGGGTCAATGAACAATTATTCCTCATTCAGCAATCAAAG----GAGGATTAATATGAATGTTATCTTGAAGAAGTTTAATTTAAAACATA-------------TTTTAT--------TGAT---------------------------------CTTTGGCAA--CTGTCTTCTATCAGATCATTACCAATCCATATG-ATTTGGGCGGAAGGGAGAAAACCCAAAACTTAATC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          197684 226 -  11645122 -CAAATATCCATCCATTCATCCACTCCAGTGAG-TGACT------AAGTGTTAGGATTTTAAGGGTCAATGAACAATTATTCCTCATTCAGCAATCAAAG----GAGGATTAATATGAATGTTATCTTGAAGAAGTTTAATTTAAAACATA-------------TTTTAT--------TGAT---------------------------------CTTTGGCAA--CTGTCTTCTATCAGATCATTACCAATCCATATG-ATTTGGGCGGAAGGGAGAAAACCCAAAACTTAATC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          182912 222 -   6739814 -CAAATATCCATC----CATCCACTCCAGTGAG-GGACT------ACGTGTTCGGATTTTAAGGGTCAATGAACAATTATTCCTCATTCAGCAATCAAAG----AAGGGTTAACATGAATATTATCTTGAAGAAGTTTAATTTAAAACATA-------------TTTCAT--------TGAT---------------------------------CTTTGGCAA--CGGTCTTCTATCAGATCATTACTAATCCACATG-ATTTGGGAGGAAGGGAGAAAACCCAAAACTTAATC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    73530 226 - 101219884 -CAAATATCCATCCATTCATCCATTCCAGTGAG-TGACT------AAGTGTTAGGATTTTAAGGGTCAATGAACAATTATTCCTCATTCAGCAATCAAAG----AAGGATTAACATGAATATTATCTTGAAGAAGTTTAATTTAAAACATA-------------TTTCAT--------TAAT---------------------------------CTTTGGCAA--CTGTCTTCTATCAGATCATTACCAATCCACATG-ATTTGGGAGGAAGGGAGAAAACCCAAAACTTAATC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195099 222 -    785044 -CAAAT----ATCCATTCATCCACTCCAGTGAG-GGACT------ACGTGTTCGGATTTTAAGGGTCAATGAACAATTATTCCTCATTCAGCAATCAAAG----AAGGATTAACATGAATATTATCTTGAAGAAGTTTAATTTAAAACATA-------------TTTCAT--------TGAT---------------------------------CTTTGGCAA--CTGTCTTCTATCAGATCATTACCAATCCACATG-ATTTGGGAGGAAGGGAGAAAACCCAAAACTTAATC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           83144 219 -  10971483 -CAAAT----GTCCATTCATCCACTCCAGTGAG-TGACT------AAGGTTTAGGATTTTAAAGGTCAATGAACAATTATTCCTCATTCAGCAATCAAAG----AAGGATTAATATGAATATTATCTT---GAAGTTTAATTTAAAGCATA-------------TTTCAT--------TGAT---------------------------------CTTTGGCAA--CTGTCTTCTATCAGATCATTACCAGTCCACATG-ATTTGGGAGGAAGGGAGAAAACCCAAAACTTAATC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10939815 226 -  13128814 -CCAAC----ATCCATTCATTCACTCCAGTGAGCTGACT------AAGTTTGGGGATTTTAAGGGTAAAGGAAAAATTATTCCTCATTCAGCAATTAGAGA-AAAAGGATTAATATGAACATTATCTTAAATAAGTATAATTTAAAACATA-------------TTTCAT--------TTAT---------------------------------CTTTGGCAA--TTTTCTTCTATCAAATCATTACCAATCCATATG-ACTTGGGAGGACAGGAGAAAATCCAAAACTTAACC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7670903 226 +  14377064 -CCAAT----ATCCATTGATTCACTCCAGTGAGCTGATT------AAGTTTGGGGATTTTAAGGGTCAAGGAACAATTATTCTTTATTCAGCAATTAGAGA-AAAAGGATTAATATGAACATTATCTTAAAGAATTATAATTTAAGACATA-------------TTTTAT--------TTAT---------------------------------CTTTGGCAG--TTGTCTTCTGTCAGATCATTAACAATCCATATG-ACTTGGGAGGACAGGAGAAAATCCAAAACTTAACC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4138617 222 -   9889416 -CCAAT----GTCCATTCATTCGCTCCAGTGAGCTGACT------AAGTTTGGGGATTTTAAGGGTCAAGGAACAATTATTCCTCATTCAGCAATTAGAG--AAAAGGTTTGATATGAACATTATCTTAAAGAAGTATAATTTAAAAC--A-------------TTTTAT--------TTAT---------------------------------CTTTGGCAA--TTGTCTTCTATCCGATCATTAGCAATCCATATG-ACTTGGGAGGACAGGAG-AAATCCAAAACTTAACC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20769765 224 +  38779656 -CCAAT----TTCAGCTCATTGTCTCTAGGGAGCTGACT------AGCGTTTAGGATTTTAAGGGTCAATAAGCAATTACTGCTCATTTGGAGGTTAA------AAGGCTTAACATGCACTTTATCTTCAGGAAG-----TTCAAAACATC-------------TTTTAT--------AGAT------------------------CAAATGCAGCTCCAGTAA--TTGTCTGCCATCAGGTCGTCTCCAATCCACGTG-AG-TGAGAGGAATGGAGAAAACCCAGAACTTTTTG
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28805739 248 -  39895921 -CAAAT---------------CAGTCTGGAGAGCTGACT------AGTGTTTGAGATTTCAAGGGTCAATGAATGAATA-TCCTCACTCAGCAATTAGATATGAAAAGCTTAACTGGCACATTATCTTAAGAACATTTAATTTATAACCTA-------------TATCAT--------TGGTCAAAGTTATAACTTATATGTTGGTCAAATGCAACTTTGGAAA--TGATCAGATAGCAGATGGTTACAAATCTATATATGAGTGGGAAGAGTGGAGAGAA-CCAGAATTTTTCC
i canFam3.chr31                I 2 C 0
s dasNov3.JH568778               6698628 243 +   6883506 CCAAAT------TCAGTTGTTCACTCCAGCAAGTTGATTTGGAACTAGATGTAGGATTTCAAAAGTCAGTAAACAGATA-TCCTCAGTCAATAATTAAAGATTAAAGGCTTAATGTG-----TATATTTGAGTCattttatttaaaacatacttatttaaaatgttttattttaaaCATGAT---------------------------------CAAATGCAACTTTGTCTGCTGTCAGATTTCTCCCAATGTATATA-AAT-----GCAAGGAGTACGGACAGAAACTTTCT-
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890058 225 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=422066.000000
s hg38.chr14_GL000009v2_random    193449 33 +    201709 AGATGCCTGAAGTTAGGGAACA------TTTTATAACCA
s panTro5.chr9                  41883401 33 + 116767853 AGATGCCTGAAGTTACGGAACA------TTTTATTACCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77850777 33 + 205426864 AGATGCCTGAAGTTAGGGAACA------TTTTATAACCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10493 33 +  12760026 AGATGCCTGAAGTTAGGGAACA------TTTTATAACCA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123559 33 -  86207423 AGATGCCTGAAGTTAGGGAGCA------TTTTATAACCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279214 33 - 204787373 AGATGCCTGAAGTTAGGGAACA------TTTTATAACCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    178438 33 - 192460366 AGATGCCTGAAGTTAGGGAACA------TTTTATAACCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          197910 33 -  11645122 AGATGCCTGAAGTTAGGGAACA------TTTTATAACCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183134 33 -   6739814 AGATGCCTGAAGTTAGGGAACA------TTTTATAACCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    73756 33 - 101219884 AGATGCCTGAAGTTAGGGAACA------TTTTATAACCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195321 33 -    785044 AGATGTCTGAAGTTAGGGAACA------TTTTATAACCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           83363 33 -  10971483 AGATGCCTGAAGTTAGGGAACA------TTTTATAACCA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940041 39 -  13128814 AGATGCCTGAAGTTAGGGAACAGGAATGTTTTCTAACCA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671129 39 +  14377064 AGATCCCTGAAGTTAGGGAACAGGAATATTTTATAACCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4138839 39 -   9889416 AGATGCCTGAAGTTAGGGAACAGGAATATTTTATAACCA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30890283 33 -  47401472 AGATGCCTGAAATTAGGGAAAA------TTTTATAACCA
i micMur3.chr31                I 225 I 64
s otoGar3.GL873528              20769989 33 +  38779656 AGAGGCCTGAAGTTTGGGAGAA------TTTTATAATCA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28805987 33 -  39895921 AGATGCCTGAAATTAAGGAAAT------TTTTACGTCCC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6698871 33 +   6883506 AGATGCCTGAAGTTAGGAGAGA------ATTTACAATCC
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=321932.000000
s hg38.chr14_GL000009v2_random    193482 42 +    201709 ACCCAGGGGGA--GAAAAATGCTCAAAAGGGGAAAGATGAGGAC
s panTro5.chr9                  41883434 40 + 116767853 ACCCAGGGG----GAAAAATGCTCAAAAGGGGAAAGATGAGGAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77850810 42 + 205426864 ACCCAGGGGGA--AAAAAAGGCTCAAAAGGGGAAGGATGAGGAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10526 41 +  12760026 ACCCAGGGGG---AAAAAAGGCTCAAAAGGGGAAAGATGAGGAC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123592 41 -  86207423 ACCCAGGGAA---AAAAAAGGCTCAAAAAGGGAAAGATGAGGAC
i nomLeu3.chr21                C 0 I 2
s rheMac8.chr2                 204279247 42 - 204787373 ACCCAGAGGGA--AAAAAATGCTCAAAAAGGGAAAGATGAGGAC
i rheMac8.chr2                 C 0 I 2
s macFas5.chr2                    178471 42 - 192460366 ACCCAGAGGGA--AAAAAATGCTCAAAAAGGGAAAGATGAGGAC
i macFas5.chr2                 C 0 I 2
s macNem1.NW_012010856v1          197943 42 -  11645122 ACCCAGAGGGA--AAAAAATGCTCAAAAAGGGAAAGATGAGGAC
i macNem1.NW_012010856v1       C 0 I 2
s cerAty1.NW_012001605v1          183167 42 -   6739814 ACCCAGAGGGA--AAAAAAGGCTCAAAAAGGGAAAGATGAGGAC
i cerAty1.NW_012001605v1       C 0 I 2
s chlSab2.chr22                    73789 42 - 101219884 ACCCAGAGGGA--AAAAAAGGCTCAAAAAGGGAAAGATGAGGAC
i chlSab2.chr22                C 0 I 2
s manLeu1.NW_012099043v1          195354 42 -    785044 ACCCAGAGGGA--AAAAAAGGCTCAAAAAGGGAAAGATGAGGAC
i manLeu1.NW_012099043v1       C 0 I 2
s colAng1.NW_012123820v1           83396 42 -  10971483 ATGCAGAGGGA--AAAAAAGGCTCAAAAAGGGAAAGATGAGGAC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940080 43 -  13128814 CCCAGGAAAAAAGAAAAAAGGCTCAAAA-TGGAAAGTCGAGGAC
i saiBol1.JH378168             C 0 I 2
s cebCap1.NW_016107322v1         7671168 38 +  14377064 CTCAGGAA-----AAAAAAGGCTCAAAA-TGGAAAGTTGAGGAC
i cebCap1.NW_016107322v1       C 0 I 2
s aotNan1.NW_018487195v1         4138878 43 -   9889416 CCCAGGAAAAAAGAAAAAAGGCTCAAAA-TGGAAAGTTGAGGAC
i aotNan1.NW_018487195v1       C 0 I 2
s otoGar3.GL873528              20770022 42 +  38779656 ACTCAGAAGAA--GAAAAGAGCTCAAAAAGGGAAGTTTGAAGAA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28806020 37 -  39895921 -----AGGGGA--GAAAAGGGCTCAGAAAAGGAGGGTTGATGAC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6698904 18 +   6883506 -----AGGGAA--GAAAAGGACCCA-------------------
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890316 64 -  47401472 I
e nasLar1.chr2                    155738 2881 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=13923.000000
s hg38.chr14_GL000009v2_random    193524 1 +    201709 A
s panTro5.chr9                  41883474 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77850852 1 + 205426864 A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10567 1 +  12760026 A
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123635 1 -  86207423 A
i nomLeu3.chr21                I 2 C 0
s rheMac8.chr2                 204279291 1 - 204787373 A
i rheMac8.chr2                 I 2 C 0
s macFas5.chr2                    178515 1 - 192460366 A
i macFas5.chr2                 I 2 C 0
s macNem1.NW_012010856v1          197987 1 -  11645122 A
i macNem1.NW_012010856v1       I 2 C 0
s cerAty1.NW_012001605v1          183211 1 -   6739814 A
i cerAty1.NW_012001605v1       I 2 C 0
s chlSab2.chr22                    73833 1 - 101219884 A
i chlSab2.chr22                I 2 C 0
s manLeu1.NW_012099043v1          195398 1 -    785044 A
i manLeu1.NW_012099043v1       I 2 C 0
s nasLar1.chr2                    158619 1 + 181502896 A
i nasLar1.chr2                 I 2881 I 491
s colAng1.NW_012123820v1           83438 1 -  10971483 A
i colAng1.NW_012123820v1       C 0 I 921
s saiBol1.JH378168              10940125 1 -  13128814 A
i saiBol1.JH378168             I 2 C 0
s cebCap1.NW_016107322v1         7671208 1 +  14377064 A
i cebCap1.NW_016107322v1       I 2 C 0
s aotNan1.NW_018487195v1         4138923 1 -   9889416 A
i aotNan1.NW_018487195v1       I 2 C 0
s otoGar3.GL873528              20770064 1 +  38779656 A
i otoGar3.GL873528             C 0 I 2
s canFam3.chr31                 28806057 1 -  39895921 A
i canFam3.chr31                C 0 I 2
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890316 64 -  47401472 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e dasNov3.JH568778               6698922 0 +   6883506 C

a score=80524.000000
s hg38.chr14_GL000009v2_random    193525 10 +    201709 GAAAATACAT
s panTro5.chr9                  41883475 10 + 116767853 GAAAATACCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77850853 10 + 205426864 GAAAATACAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10568 10 +  12760026 GAAAATACAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123636 10 -  86207423 GAAAATACGT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279292 10 - 204787373 GAAAATACAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    178516 10 - 192460366 GAAAATACAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          197988 10 -  11645122 GAAAATACAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183212 10 -   6739814 GAAAATACAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    73834 10 - 101219884 GAAAATACAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195399 10 -    785044 GAAAATACAT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10940126 10 -  13128814 GGAAATACAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671209 10 +  14377064 GGAAATACAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4138924 10 -   9889416 GGAAATACAT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20770067 10 +  38779656 GAAAATAACC
i otoGar3.GL873528             I 2 I 11
s canFam3.chr31                 28806060 10 -  39895921 GAAGATAAAC
i canFam3.chr31                I 2 C 0
s dasNov3.JH568778               6698922  3 +   6883506 -----TAT--
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890316 64 -  47401472 I
e nasLar1.chr2                    158620 491 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I

a score=461324.000000
s hg38.chr14_GL000009v2_random    193535 46 +    201709 TTCAAAGATTTTA-ACTTTTTGACAAAATGTCATTTCTGTGCAAGAA
s panTro5.chr9                  41883485 46 + 116767853 TTCAAAGATTTTA-ACTTTTTGACAAAATGTCAATTCTGTGGAAGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77850863 46 + 205426864 TTCAAAGATTTTA-ACTTTTTGACAAAATGTCAATTCTGTACAAGAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10578 46 +  12760026 TTCAAAGATTTTA-ACTTTTTGACAAAATGTCAGTTCTGTGCAAGAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123646 46 -  86207423 TTCAAAGATTTTA-ACTTTTGGGCAAAATGTCAGTTCTGTGCAAGAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279302 40 - 204787373 TTCAAAGATTTTA-ACTTTTTGACAAAA------TTCTGTGCAAGAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    178526 40 - 192460366 TTCAAAGATTTTA-ACTTTTTGACAAAA------TTCTGTGCAAGAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          197998 40 -  11645122 TTCAAAGATTTTA-ACTTTTTGACAAAA------TTCTGTGCAAGAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183222 40 -   6739814 TTCAAAGATTTTA-ACTTTTTGACAAAA------TTCTGTGCAAGAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    73844 40 - 101219884 TTCAAAGATTTTA-ACTTTTTGACAAAA------TTCTGTGCAAGAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195409 40 -    785044 TTCAAAGATTTTA-ACTTTTTGACAAAA------TTCTGTGCAAGAA
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10940136 46 -  13128814 TTCAAACATTGTA-ACTTTTTGACAAAATGTCAATTTTGTGCAAGAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671219 46 +  14377064 TTCAAACATTTTA-ACTTTTTGACAAAATGTCAGTTCTGTGCAAGAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4138934 46 -   9889416 TTCAAACATTTTA-ACTTTTTGACAAAATGTCAATTCTGTGCAAGAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30890380 46 -  47401472 TTCAAAGATTTTA-ACTTTTTGATAAAATGTCAATTCTATGTAAGAA
i micMur3.chr31                I 64 I 321
s otoGar3.GL873528              20770088 46 +  38779656 TTCAAAGATTTTA-GCTGTTTGATAAAATGTCAATTCTATATAAGAA
i otoGar3.GL873528             I 11 C 0
s canFam3.chr31                 28806070 46 -  39895921 TTCAAAAATTTTA-TTATTTTGACAAAATGTCAGTTTTGTGAAAGAA
i canFam3.chr31                C 0 I 4
s dasNov3.JH568778               6698925 46 +   6883506 TTCAAAAACTTTACATTTTTTTATAAAACATCAATTCTGTGCACAA-
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e nasLar1.chr2                    158620 491 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I

a score=265793.000000
s hg38.chr14_GL000009v2_random    193581 26 +    201709 AAAC---TGATTGTGTGAATATAAC---TGTC
s panTro5.chr9                  41883531 28 + 116767853 AAAC---TGATTGTGTGAATATAAC-TTTGTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77850909 31 + 205426864 AAACTGATGATTGTGTGAATATAAC-TTTGTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10624 30 +  12760026 AACT-GATGATTGTGTGAATATAAC-TTTGTC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123692 31 -  86207423 AAACTGATGATTGTGTGAATATAAA-TTTGTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279342 31 - 204787373 AAACTGATGATTGTGTGAATATAAA-TTTGTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    178566 31 - 192460366 AAACTGATGATTGTGTGAATATAAC-TTTGTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198038 31 -  11645122 AAACTGATGATTGTGTGAATATAAC-TTTGTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183262 31 -   6739814 AAACTGATGATTGTGTGAATATAAC-TTTGTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    73884 31 - 101219884 AAACTGATGATTGTGTGAATATAAC-TTTATC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195449 31 -    785044 AAACTGATGATTGTGTGAATATAAC-TTTGTC
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10940182 32 -  13128814 CAACTGATGATTGTGTGACTATAACTTTTGTC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671265 32 +  14377064 CAACTGATGATTGTGTGAATATAACTTTTGTC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4138980 32 -   9889416 CAACTGATGATTGTGTGAATATAACTTTTGTC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20770134 31 +  38779656 CAACTTATGATTGTGTGAAAATAAC-TTGGTC
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28806120 29 -  39895921 ACACTAATGAGTATGTGAAAATAAC---TGTC
i canFam3.chr31                I 4 I 218
s dasNov3.JH568778               6698971 28 +   6883506 ---TTGGTGATTGTGTGAAGATAAC-CTTGTC
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    158620 491 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I

a score=308215.000000
s hg38.chr14_GL000009v2_random    193607 41 +    201709 ATTTACATCTGCCAATGTGTTCAGAAATA-----TATAACCTATAA
s panTro5.chr9                  41883559 41 + 116767853 AGTTACATCTGCCGATGTGTTCAGAAATA-----TATAATCTATAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77850940 41 + 205426864 ATTTACATCTGCCAATGTGTTCAGAAATA-----TATAACCTATAA
i panPan2.chr3                 C 0 I 1
s gorGor5.CYUI01015020v1           10654 41 +  12760026 ATTTACATCTGCCAATGTGTTCAGAAATA-----CATAACCTATAA
i gorGor5.CYUI01015020v1       C 0 I 1
s nomLeu3.chr21                 42123723 41 -  86207423 ATTTACATCTGCCAATGTGTTCAGAAATA-----TATAACCTATAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279373 41 - 204787373 ATTTACATCTACCAATGTGTTCAGAAATA-----TAGAACCTGTAA
i rheMac8.chr2                 C 0 I 1
s macFas5.chr2                    178597 41 - 192460366 ATTTACATCTACCAATGTGTTCAGAAATA-----TAGAACCTGTAA
i macFas5.chr2                 C 0 I 1
s macNem1.NW_012010856v1          198069 41 -  11645122 ATTTACATCTACCAATGTGTTCAGAAATA-----TAGAACCTGTAA
i macNem1.NW_012010856v1       C 0 I 1
s cerAty1.NW_012001605v1          183293 41 -   6739814 ATTTACATCTACCAATGTGTTCAGAAATA-----TAGAACCTGTAA
i cerAty1.NW_012001605v1       C 0 I 1
s chlSab2.chr22                    73915 41 - 101219884 ATTTACATATACCAATGTGTTCAGAAATA-----TAGAACCTGTAA
i chlSab2.chr22                C 0 I 1
s manLeu1.NW_012099043v1          195480 41 -    785044 ATTTACATCTACCAATGTGTTCAGAAATA-----TGGAACCTGTAA
i manLeu1.NW_012099043v1       C 0 I 1
s saiBol1.JH378168              10940214 33 -  13128814 ATCCACAT-TGTCCATGTGTTCAGAAATA------------TATAA
i saiBol1.JH378168             C 0 I 1
s cebCap1.NW_016107322v1         7671297 41 +  14377064 AACCACATCTGTCCATGTGTTCAGAAATA-----CATAACTTACAA
i cebCap1.NW_016107322v1       C 0 I 1
s aotNan1.NW_018487195v1         4139012 41 -   9889416 ATCCACATCTGTCCATGTGTTCAGAAATA-----TATAACTCAGAA
i aotNan1.NW_018487195v1       C 0 I 1
s otoGar3.GL873528              20770165 40 +  38779656 ATGCACATCTG-CAATGTGTATGACTATA-----TATTATACGTAA
i otoGar3.GL873528             C 0 I 184
s canFam3.chr31                 28806367 44 -  39895921 ATTTATCTTCATCATTGTGTTCAGCAATATTT--TATAATGTATAA
i canFam3.chr31                I 218 C 0
s dasNov3.JH568778               6698999 46 +   6883506 ATTCACTGTTTTCAGTGTGTTCAGCAATACTTTGTGTAATTTATGT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    158620 491 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I

a score=67687.000000
s hg38.chr14_GL000009v2_random    193648 11 +    201709 -TTTTTTTAATA
s panTro5.chr9                  41883600 11 + 116767853 -TTTTTTTAATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77850982 11 + 205426864 -TTTTTTTAATA
i panPan2.chr3                 I 1 C 0
s gorGor5.CYUI01015020v1           10696 11 +  12760026 -TTTTTTTAATA
i gorGor5.CYUI01015020v1       I 1 C 0
s nomLeu3.chr21                 42123764 10 -  86207423 --GTTTTTAATA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279415 11 - 204787373 -TTTTTTTAATA
i rheMac8.chr2                 I 1 C 0
s macFas5.chr2                    178639 11 - 192460366 -TTTTTTTAATA
i macFas5.chr2                 I 1 C 0
s macNem1.NW_012010856v1          198111 11 -  11645122 -TTTTTTTAATA
i macNem1.NW_012010856v1       I 1 C 0
s cerAty1.NW_012001605v1          183335 11 -   6739814 -TTTTTTTAATA
i cerAty1.NW_012001605v1       I 1 C 0
s chlSab2.chr22                    73957 11 - 101219884 -ATTTTTTAATA
i chlSab2.chr22                I 1 C 0
s manLeu1.NW_012099043v1          195522 11 -    785044 -TTTTTTTAATA
i manLeu1.NW_012099043v1       I 1 C 0
s saiBol1.JH378168              10940248 10 -  13128814 --TTTTTAAATA
i saiBol1.JH378168             I 1 C 0
s cebCap1.NW_016107322v1         7671339 10 +  14377064 --TTTTTTAATA
i cebCap1.NW_016107322v1       I 1 C 0
s aotNan1.NW_018487195v1         4139054 10 -   9889416 --TTTTTTAATA
i aotNan1.NW_018487195v1       I 1 C 0
s canFam3.chr31                 28806411 11 -  39895921 -ATTCTTTAACA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699045 11 +   6883506 TCTCTTTTAAA-
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    158620 491 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I

a score=763642.000000
s hg38.chr14_GL000009v2_random    193659 126 +    201709 GTAGTTTGT---TAA------------AACAA----------------AATTTATTCATCAAAGTATCT--AAAACATTCTAAAAATACTAAAAATTTTCAGTTTAAATATTAAGCTAAACAGCTCTGTATATATAAATAAGCTCAAACAAACGTGCAT
s panPan2.chr3                  77850993 126 + 205426864 GTAGTTTGT---TAA------------CACAA----------------AATTTATTCATCAAAGTATCT--AAAACATTCTAAAAATACTAAAAATTTTCAATTTAAATATTAAGCTAAACAGCTCTGTATATATAAATAAGCTCAAACAAATGTGCAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10707 125 +  12760026 GTAGTTTGT---TAA------------CACAA----------------AATTTATTCATCAGAGTATCT--AAAACATTCTAAAAATACTAAAAATTTT-GATTTAAATATTAAGCTAAACAGCTCTGTATATATAAATAAGCTCAAACAAATGTGCAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123774 120 -  86207423 ---GTTTG------A------------CACAA----------------CATTTATTCATCAAAGCATCT--AAAACATTCTGAAAATACTAAAAATTTTCAATTTAAATATTAAGCTAAACAGCTCTGTATATATAAATAAGCTCAAACAAACATGCAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279426 121 - 204787373 GTAGTTTGT---TAA------------CACAA----------------AATTTATTCATCAAAGTGTCT--AAAACATTCTGAAAATACTAAAAATTTTCAATTTAAATATGAAACTAAACAACTCTG-----ATAAATAAGCTCAAACAAATGGGCAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    178650 119 - 192460366 GTAGTTTGT---TA--------------ACAA----------------AATTTATTCATCAAAGTGTCT--AAAACATTCTGAAAATACTAAAAATTTTCAATTTAAATATGAAACTAAACAACTCTG-----ATAAATAAGCTCAAACAAATGGGCAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198122 121 -  11645122 GTAGTTTGT---TAA------------CACAA----------------AATTTATTCATCAAAGTGTCT--AAAACATTCTGAAAATACTAAAAATTTTCAATTTAAATATGAAACTAAACAACTCTG-----ATAAATAAGCTCAAACAAATGGGCAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183346 121 -   6739814 GTAGTTTGT---TAA------------CACAA----------------AATTTATTCATCAAAGTGTCT--AAAACATTCTGAAAATACTAAAAATTTTCAATTTAAATATGAAACTAAACAACTCTG-----ATAAATAAGCTCAAACAAATGGGCAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    73968 121 - 101219884 GTAGTGTGT---TAA------------CACAA----------------AATTTATTCATCAAAGTATCT--AAAACATTCTGAAAATACCAAAAATTTTCAATTTAAATATGAAACTAAACAACTCTG-----ATAAATAAGCTCAAACAAATGGGCAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195533 121 -    785044 GTAGTTTGT---TAA------------CACAA----------------AATTTATTCATCAAAGTGTCT--AAAACATTCTGAAAATACTAAAAATTTTCAATTTAAATATGAAACTAAACAACTCTG-----ATAAATAAGCTCAAACAAATGGGCAT
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10940258 125 -  13128814 GTAGTTTGTTAATAA------------CAC------------------AATTTATTCATCATAGTATCT--AAAACATTCTGAAAATAGT--TAATTTTCAATTTAAATATTAAGCTAAACAATTCTGTATAGATAAGTAAGTTCAAATAAATGTGCAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671349 127 +  14377064 GTAGTTTGTTAATAA------------CACAA----------------AATTTATTCATCAAAGTATCT--AAAACATTCTGAAAATACT--AAATTTTCAATTTAAATATTAAGCTAAACAACTCTGTATGTACAAATAAGTTGAAACAAATGTGCAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139064 124 -   9889416 GTAGTTTGT---TAA------------CACAA----------------AATTTATTCATCGAAGTATCT--AAAACAGTCTGAAAATACT--AAATTTTCAATTTAAATATTAAGCTAAACAACTTTGTATATATAAATAAGTTCAAACAAATGTGCAT
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28806422 135 -  39895921 GTAGTTTGT---TAG------------TAAAAAGCTTTCTTTCTGAGGAATTTATTCATCGAAATCTCTAAAAAAAATTCTGAAAATGCT-AAGATTTTGGATTTAAATGT-----CAGATGACTCTACATA---AAATAACATTATACAAATGCACAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699056 117 +   6883506 GTGACTTGT---TAATAACTTTGTTTCCAGAA----------------AATTTATTCATCAAAGGGTC---ATGAAATGTCAGAAATATT-AAAATTGTCCATTTA--------TTCAAATAATCCTTTATAGTTAAAT--GCTTATACA---------
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    158620 491 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e panTro5.chr9                  41883611   0 + 116767853 C

a score=821195.000000
s hg38.chr14_GL000009v2_random    193785 93 +    201709 GCTTCCCA-ACAATAACACTGCTACAGATATTGATTGGTGGTTTTGGTTTCAT----------TTCATTTTATAATGGCAAATCTGGTTAAAACCCAGATTCTG
s panTro5.chr9                  41883611 93 + 116767853 GCTCCCCA-ACAATAACACTGCTACAGATATTGACTGGTGGTTTTGATTTCAT----------TTCATTTTATAATGGCAAATCTGGTTAAGACCCAGATTCTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851119 93 + 205426864 GCTCCCCA-ACAATAACACTGCTACAGATATTGACTGGTGGTTTTGGTTTCAT----------TTCATTTTATAATGGCAAATCTGGTTAAAACCCAGATTCTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10832 93 +  12760026 GCTCCCCA-ACAATAACACTGCTACAGATGTTGACTGGTGGTTTTGGTTTCAT----------TTCATTTTATAATGGCAAATCTGGTTAAAACCCAGATTCTG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123894 93 -  86207423 GCTCCCCA-ACAATAACACTGCTACAGATATTGACTGGTGGTTTTGGTTTCAT----------TTCATCTTATAATGGCAAATCTGGTTAAAACCTAGATTCTG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279547 93 - 204787373 GCTCCCCA-ACAATAACACTGCCACAGATATTGGCTGGTGGTGTTGGTTTCAT----------TTCATTTTATAATGGCACATCTGGTTAAAACCCAGGTTCTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    178769 93 - 192460366 GCTCCCCA-ACAATAACACTGCCACAGATATTGGCTGGTGGTGTTGGTTTCAT----------TTCATTTTATAATGGCACATCTGGTTAAAACCCAGGTTCTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198243 93 -  11645122 GCTCCCCA-ACAATAACACTGCCACAGATATTGGCTGGTGGTGTTGGTTTCAT----------TTCATTTTATAATGGCACATCTGGTTAAAACCCAGGTTCTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183467 93 -   6739814 GCTCCCCA-ACAATAACACTGCCACAGATATTGGCTGGTGGTTTTGGTTTCAT----------TTCATTTTATAATGGCACATCTGGTTAAAACCCAGATTCTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74089 93 - 101219884 GCTCCCCA-ACAATAACACTGCCACAGATACTGGCTGGTGGTTTTGGTTTCAT----------TTCATTTTATAATGGCACATCTGGTTAAAACCCAGATTCTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195654 93 -    785044 GCTCCCCA-ACAATAACACTGCCACAGATACTGGCTGGTGGTTTTGGTTTCAT----------TTCATTTTATAATGGCACATCTGGTTAAAACCCAGATTCTG
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10940383 93 -  13128814 GCTCCCCA-CCAATAACACTGATGCAGATATTGACTGAGGGTTTTGGTTTCAT----------TTCATTTTATAACAGCAAATCTGGTCAAAACCCAGATTCTG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671476 93 +  14377064 GCTCCCCA-ACAATAACACTGCTGCAGATATTGACTGAGGGTTTTGGTTTTAT----------TTCATTTTATAATGGCAAATCTGGTCAGAACCCATATTCTG
i cebCap1.NW_016107322v1       C 0 I 13
s aotNan1.NW_018487195v1         4139188 93 -   9889416 GCTCCCCA-ATAATAACACTGCTGCAGATACTGACTGGGGGTTTTGGTTACAT----------TTCATTTTATAATGGCAAATCTGGTCGAAACCTAGATTCTG
i aotNan1.NW_018487195v1       C 0 I 65
s canFam3.chr31                 28806557 93 -  39895921 GCACTGTG-GAAACAATGCCACTATCGATAATGGCTGGCGATTTTGGTTTCAT----------TTCATTTTATAACGACAAATCTAGTTAAAACTCAGATTCCA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699173 94 +   6883506 --TCTCTATACAA----GCTGT----GATAATAGCTGATGGTTTGGGTTTTCTTTTCTTTTGGTTTATTTTATAATGACAAATCTGTTTAAAACCCAAATACTG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    158620 491 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I

a score=17529.000000
s hg38.chr14_GL000009v2_random    193878 4 +    201709 ggct
s panTro5.chr9                  41883704 4 + 116767853 gact
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851212 4 + 205426864 Agct
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10925 4 +  12760026 Agct
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123987 4 -  86207423 ggct
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279640 4 - 204787373 ggct
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    178862 4 - 192460366 ggct
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198336 3 -  11645122 GGC-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183560 4 -   6739814 ggct
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74182 4 - 101219884 ggct
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195747 4 -    785044 ggct
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10940476 4 -  13128814 AACT
i saiBol1.JH378168             C 0 C 0
s canFam3.chr31                 28806650 4 -  39895921 AACT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699267 4 +   6883506 AACT
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    158620 491 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I

a score=6600.000000
s hg38.chr14_GL000009v2_random    193882 1 +    201709 g
s panTro5.chr9                  41883708 1 + 116767853 g
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851216 1 + 205426864 g
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10929 1 +  12760026 g
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123991 1 -  86207423 g
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279644 1 - 204787373 g
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    178866 1 - 192460366 g
i macFas5.chr2                 C 0 C 0
s cerAty1.NW_012001605v1          183564 1 -   6739814 g
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74186 1 - 101219884 g
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195751 1 -    785044 g
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10940480 1 -  13128814 G
i saiBol1.JH378168             C 0 I 6
s canFam3.chr31                 28806654 1 -  39895921 G
i canFam3.chr31                C 0 I 6
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    158620 491 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e dasNov3.JH568778               6699271 0 +   6883506 C
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I
e macNem1.NW_012010856v1          198339 0 -  11645122 C

a score=517868.000000
s hg38.chr14_GL000009v2_random    193883 117 +    201709 ggcacagtggctcacgtctgtgatctcagcactttgggaggctgagacaggcaaatcacaaggtcaacagatcgggaccatcctggccaacatggcgaaaccccatctctact------aaaa
s panTro5.chr9                  41883709 117 + 116767853 ggcgcagtggctcacgtctgtgatcccagcactttgggaggctgaggcaggcaaatcacaaggtcaacagatccggaccatcctggccaacatggtgaatccccatctctact------aaaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851217 117 + 205426864 ggcgcagtagctcacgcctgtgatcccagcactttgggaggccgaggcaggcaaatcacaaggtccacagatcgggaccatcctggccaacatggtgaaaccccatctccact------aaaa
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           10930 117 +  12760026 ggcgcagtagctcacgcctgtgatcccagcactttgggaggccgaggcagggaaatcacaaggtcaacagatcaggaccatcctggccaacatggtgaaaccccatctccact------aaaa
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42123992 117 -  86207423 ggcgcagtggctcacgcctgtaatgccagcactttgggaggccgaggcaggcaaatcacaaggtcaacagatcgggaccatcctggccaacatggtgaaaccccatctctact------aaag
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279645 121 - 204787373 ggcgtggtggctcatgcctgtaatcccagcactttgggaggccaaggcaagcaaatcacaaggtcagcagatcagcaccatcctggtcaacatggtgaaacctcatctctact--aaaaaaaa
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    178867 121 - 192460366 ggcgtggtggctcatgcctgtaatcccagcactttgggaggccaaggcaagcaaatcacaaggtcagcagatcagcaccatcctggtcaacatggtgaaacctcatctctact--aaaaaaaa
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198339 116 -  11645122 -------tggctcatgcctgtaatcccagcactttgggaggccaaggcaagcaaatcacaaggtcagcagatcagcaccatcctggtcaacatggtgaaacctcatctctactaaaaaaaaaa
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183565 117 -   6739814 ggcatggtggctcatgcctgtaattccagcactttgggaggccaaggcaggcaaatcacaaggtcagcagatcgggaccatcctggtcaacatggcgaaaccccatctctact------aaaa
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74187 117 - 101219884 ggcgtggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggcaaatcaccaggtcagcagatcgggaccatcctggtcaacatggcgaaaccccatctctact------aaaa
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195752 117 -    785044 ggcatggtggttcatgcctgtaattccagcactttgggaggccaaggcaggcaaatcacaaggtcagcagatcgggaccatcctggtcaacatggctaaaccccatctctact------aaaa
i manLeu1.NW_012099043v1       C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    158620 491 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281  65 -   9889416 I
e canFam3.chr31                 28806655   6 -  39895921 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e dasNov3.JH568778               6699271   0 +   6883506 C
e cebCap1.NW_016107322v1         7671569  13 +  14377064 I
e saiBol1.JH378168              10940481   6 -  13128814 I

a score=15763.000000
s hg38.chr14_GL000009v2_random    194000 3 +    201709 aaa
s panTro5.chr9                  41883826 3 + 116767853 aaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851334 3 + 205426864 aaa
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11047 3 +  12760026 aaa
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124109 3 -  86207423 aaa
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279766 3 - 204787373 aaa
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    178988 3 - 192460366 aaa
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198455 3 -  11645122 aaa
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183682 3 -   6739814 aaa
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74304 3 - 101219884 aaa
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195869 3 -    785044 aaa
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    159111 3 + 181502896 aca
i nasLar1.chr2                 I 491 I 1
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e canFam3.chr31                 28806655 6 -  39895921 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e dasNov3.JH568778               6699271 0 +   6883506 C
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I
e saiBol1.JH378168              10940481 6 -  13128814 I

a score=-15708.000000
s hg38.chr14_GL000009v2_random    194003 1 +    201709 -a
s panTro5.chr9                  41883829 1 + 116767853 -c
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851337 1 + 205426864 -c
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11050 1 +  12760026 -c
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124112 1 -  86207423 -c
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279769 1 - 204787373 a-
i rheMac8.chr2                 C 0 I 17
s macFas5.chr2                    178991 1 - 192460366 a-
i macFas5.chr2                 C 0 I 17
s macNem1.NW_012010856v1          198458 1 -  11645122 a-
i macNem1.NW_012010856v1       C 0 I 17
s cerAty1.NW_012001605v1          183685 1 -   6739814 a-
i cerAty1.NW_012001605v1       C 0 I 17
s papAnu3.chr2                    125620 1 + 187378091 a-
i papAnu3.chr2                 N 0 I 174
s chlSab2.chr22                    74307 1 - 101219884 a-
i chlSab2.chr22                C 0 I 9
s manLeu1.NW_012099043v1          195872 1 -    785044 a-
i manLeu1.NW_012099043v1       C 0 I 16
s rhiBie1.NW_016812636v1          152376 1 +   2104565 a-
i rhiBie1.NW_016812636v1       N 0 I 654
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159114 1 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e canFam3.chr31                 28806655 6 -  39895921 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e dasNov3.JH568778               6699271 0 +   6883506 C
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I
e saiBol1.JH378168              10940481 6 -  13128814 I

a score=27940.000000
s hg38.chr14_GL000009v2_random    194004 5 +    201709 atacg
s panTro5.chr9                  41883830 5 + 116767853 ataca
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851338 5 + 205426864 ataca
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11051 5 +  12760026 ataca
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124113 5 -  86207423 ataca
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279787 5 - 204787373 ataca
i rheMac8.chr2                 I 17 C 0
s macFas5.chr2                    179009 5 - 192460366 ataca
i macFas5.chr2                 I 17 C 0
s macNem1.NW_012010856v1          198476 5 -  11645122 ataca
i macNem1.NW_012010856v1       I 17 C 0
s cerAty1.NW_012001605v1          183703 5 -   6739814 ataca
i cerAty1.NW_012001605v1       I 17 C 0
s chlSab2.chr22                    74317 5 - 101219884 ataca
i chlSab2.chr22                I 9 C 0
s manLeu1.NW_012099043v1          195889 5 -    785044 ataca
i manLeu1.NW_012099043v1       I 16 C 0
s nasLar1.chr2                    159115 5 + 181502896 acaca
i nasLar1.chr2                 I 1 I 112
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e papAnu3.chr2                    125621 174 + 187378091 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e canFam3.chr31                 28806655 6 -  39895921 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e dasNov3.JH568778               6699271 0 +   6883506 C
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I
e saiBol1.JH378168              10940481 6 -  13128814 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=491528.000000
s hg38.chr14_GL000009v2_random    194009 111 +    201709 aaagttagctgggcatggtggcacgtgcctgtagtcccagctacttgggaggctgaggcaggagaatcacttggacctgggaggcagaggttgca-tgagctgagactgtgc
s panTro5.chr9                  41883835 112 + 116767853 aaagttagctgggtatggtggcacgtgcctgtagttccagctacttgggaggctgaggcaggagaatcacttggacctgggaggcagaggttgcagtgagccgaggctgtgc
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851343 111 + 205426864 aaagttagctgggtgtggtggcacgtgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttggacccaggaggcggaggttgcagtgagcccagattgtg-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11056 111 +  12760026 aaagttagctgggtgtggtggcacgtgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttggacccgggaggcggaggttgcagtgagcccagattgtg-
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124118 112 -  86207423 aaaattagctgggcgtggtggcacgtgcccgtagtcccagctactcaggaggctgaggcaggagaattgcttggacctgggaggcggaggttgcagtgagctgagattgtgc
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279792 112 - 204787373 aaaagtagctgggcatggtggcatgtgcctgtagtctcagctactcaggaggctgcggcaggagaatcacttggacctgggaggtggaggatgcagtgagccgagattgcgc
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179014 112 - 192460366 aaaagtagctgggcgtggtggcatgtgcctgtagtctcagctactcaggaggctgaggcaggagaatcacttggacctgggaggtggaggatgcagtgagccgagattgcgc
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198481 112 -  11645122 aaaagtagctgggcgtggtggcatgtgcctgtagtctcagctactcaggaggctgaggcaggagagtcacttggacctgggaggtggaggatgcagtgagccgagattgcgc
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183708 112 -   6739814 aaaagtagctgggcgtggtggcacatgcctgtagtctcagctactcaggaggctgaggcaggagaatcgcttggacctgggaggcggaggatgcagtgagccgagattgcgc
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74322 112 - 101219884 aaaagtagctgggcgtggtggcacgtgcctgtagtctcagctactcaggaggctgaggcaggagaatcgcttggacctgggaggcggaggatgcagtgagctgagattgcgc
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195894 102 -    785044 aaaagtagctgggcgtggtggcacgtgcctgtagtctcagctactcagg----------aggagaatcgcttggacctgggaggcggaggatgcagtgagccgagattgcgc
i manLeu1.NW_012099043v1       C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159120 112 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e papAnu3.chr2                    125621 174 + 187378091 I
e aotNan1.NW_018487195v1         4139281  65 -   9889416 I
e canFam3.chr31                 28806655   6 -  39895921 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e dasNov3.JH568778               6699271   0 +   6883506 C
e cebCap1.NW_016107322v1         7671569  13 +  14377064 I
e saiBol1.JH378168              10940481   6 -  13128814 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=6600.000000
s hg38.chr14_GL000009v2_random    194120 1 +    201709 c
s panTro5.chr9                  41883947 1 + 116767853 c
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851454 1 + 205426864 c
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11167 1 +  12760026 c
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124230 1 -  86207423 c
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279904 1 - 204787373 c
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179126 1 - 192460366 c
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198593 1 -  11645122 c
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183820 1 -   6739814 c
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74434 1 - 101219884 c
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195996 1 -    785044 c
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    159232 1 + 181502896 c
i nasLar1.chr2                 I 112 I 432
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e papAnu3.chr2                    125621 174 + 187378091 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e canFam3.chr31                 28806655 6 -  39895921 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e dasNov3.JH568778               6699271 0 +   6883506 C
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I
e saiBol1.JH378168              10940481 6 -  13128814 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=175371.000000
s hg38.chr14_GL000009v2_random    194121 38 +    201709 actgtactccagcctggtaacagagagagactccatct
s panTro5.chr9                  41883948 38 + 116767853 actgtactccagcctggtgacagagagagactccatct
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851455 38 + 205426864 actgtactccagcctggtgacagagagagactccgtct
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11168 38 +  12760026 actgtactccagcctggtgacagagagagactccatct
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124231 38 -  86207423 actgtactccagcctggtgacaaagatggactccgtct
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279905 38 - 204787373 actacactccagcctggtgacagagagagactctgtct
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179127 38 - 192460366 actacactccagcctggtgacagagagagactctgtct
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198594 38 -  11645122 actacactccagcctggtgacagagacagactctgtct
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183821 38 -   6739814 actgcactccagcctggtgacagagagagactctgtct
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74435 38 - 101219884 actgcactccagcctggtgacagagagagactctgtct
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          195997 38 -    785044 actgcactccagcctggtgacagagagagactctgtac
i manLeu1.NW_012099043v1       C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e papAnu3.chr2                    125621 174 + 187378091 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e canFam3.chr31                 28806655  6 -  39895921 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e dasNov3.JH568778               6699271  0 +   6883506 C
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I
e saiBol1.JH378168              10940481  6 -  13128814 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=57495.000000
s hg38.chr14_GL000009v2_random    194159 12 +    201709 caaaacaaaaca
s panTro5.chr9                  41883986 12 + 116767853 caaaacaaaaca
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851493 12 + 205426864 gaaaacaaaaca
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11206 12 +  12760026 gaaaacaaaaca
i gorGor5.CYUI01015020v1       C 0 C 0
s rheMac8.chr2                 204279943 12 - 204787373 caaaacaaaaca
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179165 12 - 192460366 caaaacaaaaca
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198632 12 -  11645122 caaaacaaaaca
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183859 12 -   6739814 caaaacaaaaca
i cerAty1.NW_012001605v1       C 0 C 0
s papAnu3.chr2                    125795 12 + 187378091 caaaacaaaaca
i papAnu3.chr2                 I 174 N 0
s chlSab2.chr22                    74473 12 - 101219884 caaaacaaaaca
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196035 12 -    785044 caaaacaaaaca
i manLeu1.NW_012099043v1       C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e canFam3.chr31                 28806655  6 -  39895921 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e dasNov3.JH568778               6699271  0 +   6883506 C
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I
e saiBol1.JH378168              10940481  6 -  13128814 I
e nomLeu3.chr21                 42124269  0 -  86207423 C
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=1587.000000
s hg38.chr14_GL000009v2_random    194171 9 +    201709 aaacaaaac
s panTro5.chr9                  41883998 4 + 116767853 aaaT-----
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851505 9 + 205426864 aaacaaaaC
i panPan2.chr3                 C 0 I 24
s gorGor5.CYUI01015020v1           11218 9 +  12760026 aaacaaaaC
i gorGor5.CYUI01015020v1       C 0 I 24
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e rheMac8.chr2                 204279955 0 - 204787373 C
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e canFam3.chr31                 28806655 6 -  39895921 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e dasNov3.JH568778               6699271 0 +   6883506 C
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I
e saiBol1.JH378168              10940481 6 -  13128814 I
e manLeu1.NW_012099043v1          196047 0 -    785044 C
e chlSab2.chr22                    74485 0 - 101219884 C
e cerAty1.NW_012001605v1          183871 0 -   6739814 C
e macNem1.NW_012010856v1          198644 0 -  11645122 C
e macFas5.chr2                    179177 0 - 192460366 C
e nomLeu3.chr21                 42124269 0 -  86207423 C
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=92488.000000
s hg38.chr14_GL000009v2_random    194180 47 +    201709 aaaacaaaacaaaacaaaacaaaacCCCAGATTCTGAACTGACTCTC
s panTro5.chr9                  41884002 22 + 116767853 -------------------------CCCAGATTCTGAATTGAATCTC
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42124269 43 -  86207423 ----caaaacaaaacaaaacaaaaCCTCGGATTCTGAACTGAATCTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204279955 43 - 204787373 ----aaaaacaaaacaaaacaaaACCCCAAATTCTGAACTGAATCTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179177 43 - 192460366 ----aaaaacaaaacaaaacaaaACCCCAAATTCTGAACTGAATCTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198644 43 -  11645122 ----aaaaacaaaacaaaacaaaACCCCAAATTCTGAACTGAATCTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183871 38 -   6739814 ----a-----aaaacaaaacaaaaCCCCAAATTCTGAACTGAATCTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74485 38 - 101219884 ---------aaaaacaaaacaaaaCCCCAAATTCTGAACTGAATCTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196047 38 -    785044 ---------aaaaacaaaacaaaaCCCCAAATTCTGAACTGAATCTC
i manLeu1.NW_012099043v1       C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e canFam3.chr31                 28806655  6 -  39895921 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e dasNov3.JH568778               6699271  0 +   6883506 C
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I
e saiBol1.JH378168              10940481  6 -  13128814 I
e panPan2.chr3                  77851514 24 + 205426864 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I
e gorGor5.CYUI01015020v1           11227 24 +  12760026 I

a score=1761.000000
s hg38.chr14_GL000009v2_random    194227 2 +    201709 AC
s panTro5.chr9                  41884024 2 + 116767853 AC
i panTro5.chr9                 C 0 C 0
s rheMac8.chr2                 204279998 2 - 204787373 AG
i rheMac8.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198687 2 -  11645122 AG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183909 2 -   6739814 AG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74523 2 - 101219884 AG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196085 2 -    785044 AG
i manLeu1.NW_012099043v1       C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e canFam3.chr31                 28806655 6 -  39895921 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e dasNov3.JH568778               6699271 0 +   6883506 C
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I
e saiBol1.JH378168              10940481 6 -  13128814 I
e macFas5.chr2                    179220 0 - 192460366 C
e nomLeu3.chr21                 42124312 0 -  86207423 C
e panPan2.chr3                  77851514 24 + 205426864 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I
e gorGor5.CYUI01015020v1           11227 24 +  12760026 I

a score=151499.000000
s hg38.chr14_GL000009v2_random    194229 1809 +    201709  
s panTro5.chr9                  41884026 1810 + 116767853  
i panTro5.chr9                 C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426  321 -  47401472 I
e nasLar1.chr2                    159233  432 + 181502896 I
e rheMac8.chr2                 204280000    0 - 204787373 C
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281   65 -   9889416 I
e canFam3.chr31                 28806655    6 -  39895921 I
e otoGar3.GL873528              20770205  184 +  38779656 I
e colAng1.NW_012123820v1           83439  921 -  10971483 I
e dasNov3.JH568778               6699271    0 +   6883506 C
e cebCap1.NW_016107322v1         7671569   13 +  14377064 I
e saiBol1.JH378168              10940481    6 -  13128814 I
e manLeu1.NW_012099043v1          196087    0 -    785044 C
e chlSab2.chr22                    74525    0 - 101219884 C
e cerAty1.NW_012001605v1          183911    0 -   6739814 C
e macNem1.NW_012010856v1          198689    0 -  11645122 C
e macFas5.chr2                    179220    0 - 192460366 C
e nomLeu3.chr21                 42124312    0 -  86207423 C
e panPan2.chr3                  77851514   24 + 205426864 I
e rhiBie1.NW_016812636v1          152377  654 +   2104565 I
e gorGor5.CYUI01015020v1           11227   24 +  12760026 I

a score=-137.000000
s hg38.chr14_GL000009v2_random    196038 1 +    201709 A
s panTro5.chr9                  41885836 1 + 116767853 c
i panTro5.chr9                 C 0 C 0
s dasNov3.JH568778               6699271 1 +   6883506 A
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e rheMac8.chr2                 204280000 0 - 204787373 C
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e canFam3.chr31                 28806655 6 -  39895921 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I
e saiBol1.JH378168              10940481 6 -  13128814 I
e manLeu1.NW_012099043v1          196087 0 -    785044 C
e chlSab2.chr22                    74525 0 - 101219884 C
e cerAty1.NW_012001605v1          183911 0 -   6739814 C
e macNem1.NW_012010856v1          198689 0 -  11645122 C
e macFas5.chr2                    179220 0 - 192460366 C
e nomLeu3.chr21                 42124312 0 -  86207423 C
e panPan2.chr3                  77851514 24 + 205426864 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I
e gorGor5.CYUI01015020v1           11227 24 +  12760026 I

a score=2412.000000
s hg38.chr14_GL000009v2_random    196039 2 +    201709 AA
s panTro5.chr9                  41885837 2 + 116767853 aA
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42124312 2 -  86207423 AG
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    179220 2 - 192460366 AG
i macFas5.chr2                 C 0 C 0
s saiBol1.JH378168              10940487 2 -  13128814 AG
i saiBol1.JH378168             I 6 C 0
s canFam3.chr31                 28806661 2 -  39895921 AG
i canFam3.chr31                I 6 C 0
s dasNov3.JH568778               6699272 2 +   6883506 AA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e rheMac8.chr2                 204280000 0 - 204787373 C
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e colAng1.NW_012123820v1           83439 921 -  10971483 I
e cebCap1.NW_016107322v1         7671569 13 +  14377064 I
e manLeu1.NW_012099043v1          196087 0 -    785044 C
e chlSab2.chr22                    74525 0 - 101219884 C
e cerAty1.NW_012001605v1          183911 0 -   6739814 C
e macNem1.NW_012010856v1          198689 0 -  11645122 C
e panPan2.chr3                  77851514 24 + 205426864 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I
e gorGor5.CYUI01015020v1           11227 24 +  12760026 I

a score=262989.000000
s hg38.chr14_GL000009v2_random    196041 29 +    201709 AATAAGGATC----TCAAAGAGGTCACTATGTA
s panTro5.chr9                  41885839 29 + 116767853 AATAAGGTTC----TCAAAGAGGTCAATATGTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851538 29 + 205426864 AATAAGTATC----TCAAAGAGGTCAATATGTA
i panPan2.chr3                 I 24 C 0
s gorGor5.CYUI01015020v1           11251 29 +  12760026 AATAAGGATC----TCAAAGAGGTCAATATGTA
i gorGor5.CYUI01015020v1       I 24 C 0
s nomLeu3.chr21                 42124314 29 -  86207423 AATAAGGATC----TCAAAGAGGTCAATATGTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280000 29 - 204787373 AATAAGGATC----TCAAAGAGGTCAATATGTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179222 29 - 192460366 AATAAGGATC----TCAAAGAGGTCAATATGTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198689 29 -  11645122 AATAAGGATC----TCAAAGAGGTCAATATGTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183911 29 -   6739814 AATAAGGATC----TCAAAGAGGTCAATATGTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74525 29 - 101219884 AATAAGGATC----TCAAAGAGGTCAATATGTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196087 29 -    785044 AATAAGGATC----TCAAAGAGGTCAATATGTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           84360 29 -  10971483 AATAAGGACC----TCAAAGAGGTCAATATGTA
i colAng1.NW_012123820v1       I 921 C 0
s saiBol1.JH378168              10940489 29 -  13128814 AATAAGAATC----TCAAAGAGATCAATATATA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671582 29 +  14377064 AATAAGAATC----TCGAAGAGATCAATATATA
i cebCap1.NW_016107322v1       I 13 C 0
s canFam3.chr31                 28806663 29 -  39895921 AATAAATACC----TCAAAAAGATCAATATGTA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699274 33 +   6883506 TTTCAGGATCATTATCTGAAAGATGAATATATA
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22714198 3408 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=175317.000000
s hg38.chr14_GL000009v2_random    196070 26 +    201709 TATAATCTATTCTTAAAGAAAAATTT
s panTro5.chr9                  41885868 25 + 116767853 TATAATCTATTCTTAAA-AACAATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851567 26 + 205426864 TGTAATCTGTTCTTAAAGAAAATTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11280 26 +  12760026 TGTAATCTATTCTTAAAGAAAATTTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124343 26 -  86207423 TGTAATCTATTCTTAAAGAAAAATTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280029 26 - 204787373 TATAATCTATTCTGAAAGAAAAATTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179251 26 - 192460366 TATAATCTATTCTGAAAGAAAAATTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198718 26 -  11645122 TATAATCTATTCTGAAAGAAAAATTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183940 26 -   6739814 TATAATCTATTCTGAAAGAAAAATTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74554 26 - 101219884 TATAATCTATTCTGAAAGAAAAATTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196116 26 -    785044 TATAGTCTATTCTGAAAGAAAAATTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           84389 26 -  10971483 TATAATATATTCTGAAAGAAAAATTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940518 23 -  13128814 TGTGATCTATTCTTAAAGAAACA---
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671611 23 +  14377064 TGTGATCTATTCTTAAAGAATAA---
i cebCap1.NW_016107322v1       C 0 C 0
s mm10.chr16                    22717606 22 -  98207768 TATAATCT----TTGAAAATAAATGT
i mm10.chr16                   I 3408 I 1
s canFam3.chr31                 28806692 26 -  39895921 TGTTGTCCAATCTTTTAAAAAAATCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699307 24 +   6883506 TAAGATCTAAACTTTA--AAAAATTC
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e aotNan1.NW_018487195v1         4139281 65 -   9889416 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=12376.000000
s hg38.chr14_GL000009v2_random    196096 1 +    201709 T
s panTro5.chr9                  41885893 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851593 1 + 205426864 T
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11306 1 +  12760026 T
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124369 1 -  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280055 1 - 204787373 T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179277 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198744 1 -  11645122 T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183966 1 -   6739814 T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74580 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196142 1 -    785044 T
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           84415 1 -  10971483 T
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940541 1 -  13128814 T
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671634 1 +  14377064 T
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139346 1 -   9889416 T
i aotNan1.NW_018487195v1       I 65 C 0
s canFam3.chr31                 28806718 1 -  39895921 T
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699331 1 +   6883506 T
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22717628 1 -  98207768 I
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e otoGar3.GL873528              20770205 184 +  38779656 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=605971.000000
s hg38.chr14_GL000009v2_random    196097 62 +    201709 CTCCAAT--------TGTTTAATGAAATATCACACAGACTCTGACTTTGTTTATACCCTTAAAAATTATG
s panTro5.chr9                  41885894 62 + 116767853 CTCCAAT--------TGTTTATTGAAATATCACACAGGCTCTGACTTTGTTTATACCCTTAAGAAGTACG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851594 62 + 205426864 CTCCAGT--------TGTTTATTGAAATATCACACAGGCTCTGACTTTGTTTATACCCTTAAAAAGTATC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11307 62 +  12760026 CTCCAAT--------TGTTTATTGAAATATCACACAGGCTCTGACTTTGTTTATACCCTTAAAAAGTATC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124370 62 -  86207423 CTCCAAT--------TCTTTATTGAACTATCACACAGGCTCTGACTTTGTTTATACCCTTAAAAAGTATC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280056 62 - 204787373 CTCCAAT--------TGTTTATTGAAATATCACACAGGCTCTGCCTTTGTTTATACCCTTGAAAAGTATC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179278 62 - 192460366 CTCCAAT--------TGTTTATTGAAATATCACACAGGCTCTGCCTTTGTTTATACCCTTGAAAAGTATC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198745 62 -  11645122 CTCCAAT--------TGTTTATTGAAATATCACACAGGCTCTGCCTTTGTTTATACCCTTGAAAAGTATC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          183967 62 -   6739814 CTCCAAT--------TGTTTATTGAAATATCACACAGGCTCTGCCTTTGTTTATACCCTTGAAAAGTATC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74581 62 - 101219884 CTCTAAT--------TGTTTATTGAAATATCACACAGGCTCTGCCTTTATTTATACCCTTGAAAAGTATC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196143 62 -    785044 CTCCAAT--------TGTTTATTGAAATATCACACAGGCTCTGCCTTTGTTTATACCCTTGAAAAGTATC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           84416 62 -  10971483 CTCCAAT--------TGTTTATTGAAATATCACACAGGCTCTGCCTTTGTTTATACCCTTGAAAAATATC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940542 57 -  13128814 CTCCAGT--------TGTTT-----AATAGCTCACAGGTTCTGACTTTGGTTATAACCTTAAAAAGTATC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671635 59 +  14377064 TTCCAGT--------TTATT---GAAATAGCTCACAAGCTCTGGCTTTGGTTATAATCTTAAAAAGTATC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139347 62 -   9889416 CTCCAGT--------TGTTTATTGAAATAGCTCACAAGCTCTGACTTTGGTTATAACCTTAAAAAGTATC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20770389 62 +  38779656 CCCCTGT--------TGTTTCTTAAAATACCACACAGACTTTGACTTTGATTATACTGTGGGAAAGAATC
i otoGar3.GL873528             I 184 C 0
s mm10.chr16                    22717629 66 -  98207768 TTCTAATGTGTTCTCTGCTTCTTAAATACATATGCAGGGTCT-ACTTTGTTTATG---TTTAGAAATATA
i mm10.chr16                   I 1 I 2
s canFam3.chr31                 28806719 61 -  39895921 TCCTGGT--------TATTTCTTAAGATATTACACAGG-TCTGATTTTGGTTACACTCTGGAAAAGTGTC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699332 58 +   6883506 CTTCTGT----------TTAATTAAAATAT--CACAGGCAATAACATTGAAAATATCCTGAAAAAGTATG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30890426 321 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=712584.000000
s hg38.chr14_GL000009v2_random    196159 54 +    201709 TAGATTTATGTGTAGCTTTTGTAAAGTGAAAGCTCAGAATGTCTACTCTGTTCT
s panTro5.chr9                  41885956 54 + 116767853 TAGATTTATGTGCAGCTTTTGTAAAGTGAAAGCTCAGAATGTCTACTCTGTTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851656 54 + 205426864 TAGATTTATGTGTAGCTTTTGTAAAGTGAAAGCTCAGAATGTCTACTCTGTTCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11369 54 +  12760026 TAGATTTATGTGTAGCTTTTGTAAAGTGAAAGCTCAGAATGTCTACTCTGTTCT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124432 54 -  86207423 TAGATTTATGTGTAGCTTTTGTAAAGTGAAAGCTCAGAATGTCTACTCTGTCCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280118 54 - 204787373 TAGATTTATGTGTAGCTTTTGTAAAGTGAAAGCTCAGAATGTGTACTCTCTTCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179340 54 - 192460366 TAGATTTATGTGTAGCTTTTGTAAAGTGAAAGCTCAGAATGTGTGCTCTCTTCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198807 54 -  11645122 TAGATTTATGTGTAGCTTTTGTAAAGTGAAAGCTCAGAATGTGTCCTCTCTTCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184029 54 -   6739814 TAGATTTATGTGTAGCTTTTGTAAAGTGAAAGCTCAGAATGTGTACTCTCTTCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74643 54 - 101219884 TAGATTTATGTGTAGCTTTTGTAAAGTGAAAGCTCAGAATGTGTACTCTCTTCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196205 54 -    785044 TAGATTTATGTGTAGCTTTTGTAAAGTGAAAGCTCAGAATGTGTACTCTCTTCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           84478 54 -  10971483 TAGATTTATATGTAGCTTTTGTAAAGTGAAAGCTCAGAATGTGTACTCTGTTCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940599 54 -  13128814 TAGATTTATATGTAGCTTTTGTAAAGTTAAAGCTCAGAATGTCTACTCTGTTCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671694 53 +  14377064 TAG-TTTATATGTAGCTTTTGTAAAGTGGAAGCTCAGAATGTCTACTCTGTTCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139409 54 -   9889416 TAGATTTATGTGTAGCTTTTGTAAAGTGGAAGCTCAGAATGTCTACTCTGTTCT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30890747 54 -  47401472 TAGATTTATGTGCAGCTATTACAAAGTCACAGCTCAGAATATCTATTCTGTTCT
i micMur3.chr31                I 321 I 251
s otoGar3.GL873528              20770451 54 +  38779656 CAGATTTATGTGCCTCTGTTGAAAAGGAGGAGGTCAGAATATCTACTCTGTTCC
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22717697 54 -  98207768 TAGATTTGTGCTCACCTATCACAATATGGTATCTCAGAATGTTCCCTCTCTTCT
i mm10.chr16                   I 2 I 4
s canFam3.chr31                 28806780 54 -  39895921 TAGATTTATGTGCAGCTATTGCAAAGTTGGAGCTCTGAATGTCTATTCTGTTTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699390 51 +   6883506 TACGTTTATG---GGCTATTGCAAAATAGAAGCTCAGAATGATTGTTATGTTCT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159233 432 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=792074.000000
s hg38.chr14_GL000009v2_random    196213 74 +    201709 GGTACCACTTTAGTTTAATTGTTGGGAAATATTTAATAAAAATGAATTACTCAACAAATGGAAAATTTGAACTT
s panTro5.chr9                  41886010 74 + 116767853 GGTACCACTTTAGTTTAATTGTTGGAAAATATTTAATAAAAATGAATTACTCAACAAATGGAAAATTTGAATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851710 74 + 205426864 GGTACCACTTTAGCTTAATTGCTGGAAAATATTTAATAAAAATGAATTGGTCAACAAATGGAAAATTTGAACTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11423 74 +  12760026 GGTACCACTTTAGCTTAATTGCTGGAAAATATTTAATAAAAATGAATTGGTCAACAAATGGAAAATTTGAACTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124486 74 -  86207423 GGTACCCCTTTAGTTTAATTTCTGGAAAATATTTAATAAAAATGAATTGGTCAACAAATGGAAAATTTGAACTT
i nomLeu3.chr21                C 0 I 298
s rheMac8.chr2                 204280172 74 - 204787373 GGTACCACTTTAGTTTAATTGCTGGAAAATATTTAATAAAAATGAATTGGTCAACAAATGGAAAATTTGAACTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179394 74 - 192460366 GGTACCACTTTAGTTTAATTGCTGGAAAATATTTAATAAAAATGAATTGGTCAACAAATGGAAAATTTGAACTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198861 74 -  11645122 GGTACCACTTTAGTTTAATTGCTGGAAAATATTTAATAAAAATGAATTGGTCAACAAATGGAAAATTTGAACTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184083 74 -   6739814 GGTACCACTTTAGTTTAATTGCTGGAAAATATTTAATAAAAATGAATTGGTCAACAAATGGAAAATTTGAACTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74697 74 - 101219884 GGTACCACTTTAGTTTAATTGCTAGAAAATATTTAATAAAAATGAATTGGTCAACAAATGGAAAATTTGAACTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196259 74 -    785044 GGTACCACTTTAGTTTAATTGCTGGAAAATATTTAATAAAAATGAATTGGTCAACAAATGGAAAATTTGAACTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           84532 69 -  10971483 GGTACCAC-----TTTAATTGCTGGAAAATTTTTAATAAAAATGAATTGGTCAACAAATGGAAAATTTGAACTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940653 74 -  13128814 GGTGCCACTATAGTATAATTGCTGGAAAATATTTCATAGTAATGGATTGGTCAACAAATGGAAAGTTTGAACTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671747 74 +  14377064 GGTGCTGCTATAGTATAATTGCTGGAAAATATTTAATGGAAATGGATTGGTCGACAAACGGAAAGTTTGAACTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139463 74 -   9889416 GGTGCTGCTATAGTATAATTGCTGGAAAATATTTAATAGAAATGGATTGGTCGACAAATGGAAAGTTTGAACTT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20770505 70 +  38779656 AGTGGCTCAGTGGT----TTGTTTTAAGATATTCAGTAACATTGAAATAGTTAATACATGGACAATTTTAACTT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22717755 70 -  98207768 GGT---CCTTTTATGTAATTGCCACAAAATATTTGATTAAAAGGGGAATTTTACTAAATTAGAAA-TTGAACTG
i mm10.chr16                   I 4 C 0
s canFam3.chr31                 28806834 67 -  39895921 GGTGGCTCT-TAGTCTAATTGCTATAAAATATTTAATA------GATTGGTTGACAAATTGAAAATTTGAACTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699441 74 +   6883506 TGTGACTCATTGGTCTAAGTGCTATAAAATACTAACTGAAATTGGATTGGTTGACAAATGGGAAATTTGAATTT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30890801 251 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=825314.000000
s hg38.chr14_GL000009v2_random    196287 90 +    201709 TGCATACTAAATTTTTACTTCATAT-------TATCAAC-TCTTGAAAAATAAGTGTGTATATTAGAAATGACACTCATTTGACT-ATACCATAATATA
s panTro5.chr9                  41886084 90 + 116767853 TGCATACTATATTTTTACTTCATAT-------TATCAAC-TCTTGAAAAATAAGTGTGCCTATTAGAAATGACACTCATTTGACT-ATACCATAATATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851784 90 + 205426864 TGCATACTAAATTTTTACTTCATAT-------TATCAAC-TCTTGAAAAATAAGTGTGTATATTAGAAATGACACTCATTTGACT-ATACCATAATAGA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11497 90 +  12760026 TGCATACTAAATTTTTACTTCATAT-------TATCAAC-TCTTGAAAAATAAGTGTGTATATTAGAAATGACACTCATTTGACT-ATACCGTAATAGA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124858 90 -  86207423 TGCATACTAAATTTTTACTTCATAT-------TATCGAC-TCTTGAAAAATAAGTGTGTATATTAGAAATGACACTCATTTGACT-ATACCATAATGCA
i nomLeu3.chr21                I 298 C 0
s rheMac8.chr2                 204280246 90 - 204787373 TGCATATTAAATTTTTACTTCATAT-------TATCAAC-TCTTGAAAAATAAGTGTGCATATTAGAAATGACACTCATTTGACT-GTACCATAATATA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179468 90 - 192460366 TACATATTAAATTTTTACTTCATAT-------TATCAAC-TCTTGAAAAATAAGTGTGCATATTAGAAATGACACTCATTTGACT-GTACCATAATATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          198935 90 -  11645122 TGCATATTAAATTTTTACTTCATAT-------TATCAAC-TCTTGAAAAATAAGTGTGCATATTAGAAATGACACTCATTTGACT-GTACCATAATATA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184157 90 -   6739814 TGCATATTAAATTTTTACTTCATAT-------TATCAAC-TCTTGAAAAATAAGTGTGCATATTACAAATGACACTCATTTGACT-ATACCACAATATA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74771 90 - 101219884 TGCATATTAAATTTTTACTTCATAT-------TATCAAC-TCTTGAAAAATAAGTGTGCATATTACAAATGACACTCATTTGACT-ATACCATAATATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196333 90 -    785044 TGCATATTAAATTTTTACTTCATAT-------TATCAAC-TCTTGAAAAATAAGTGTGCATATTACAAATGACACTCATTTGACT-ATACCATAATATA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           84601 90 -  10971483 TGTATGTTAAATTTTTACTTCATAT-------TATCAAC-TCTTGAAAAATAAGTGTGCGTATTAGAAATGACACTCATTTGACT-ACACCATAATATA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940727 90 -  13128814 TGTGCACCTAATTTTTAAGTTGTAT-------TATCGAC-TCTTGAAAAATAAGTGTGTATAGTAGAAAAGAGACTCATTTGACT-ATGTCATAATATA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671821 90 +  14377064 TGCGCACCTAATTTTTACATTGTAT-------TATCAAC-TCTTGAAAAATAAGTGTGTATAGTAGAAATGAGGTTCATTTGACT-ATATCATAAGATA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139537 90 -   9889416 TGTGCACCTAATTTTTACATTGTAT-------TATCAAC-TCTTGAAAAATAAGTGTGTATGGTAGAAATGAGACTCATTTGACT-ATGTCATAATATA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20770575 80 +  38779656 TATATACTGAGATT----------T-------TATTAAC-ACTTGAAAAATAGGTGCACAAACTAGAAATAACATTCATATGTCTAATGTCATGATAT-
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22717825 48 -  98207768 TACTTATTAAATATTCCATTGTCAT-------TGTCCATGGCTTGAAAAAT------------TACA--------------------------------
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28806901 84 -  39895921 CATGCACTAAAGTTTTACTTTGTCTATATATGCACCTAT-TTTTCAAGAGG------------TAAAAAT-ACATTCACTTCACT-ACATCATAATAGA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699515 86 +   6883506 CATGCATTAAATTTTTACTTTGTAT-------TATTGAC---TGGAAAAATTGGGGCAAATAGTAGAAATGACATTCCTTT-ACT-ACATTATAATAG-
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30890801 251 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e eulFla1.LGHW01000695v1           93614 3647 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=201228.000000
s hg38.chr14_GL000009v2_random    196377 18 +    201709 TTTCAGACATTTT-ATCTT
s panTro5.chr9                  41886174 18 + 116767853 TTTCAGACTTTTT-ATCTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851874 18 + 205426864 TTTCAGACTTTTT-GTCTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11587 18 +  12760026 TTTCAGACTTTTT-ATCTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124948 18 -  86207423 TTTCAGACTTTTT-ATCTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280336 18 - 204787373 TTTCAGACGTTTT-ATCTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179558 18 - 192460366 TTTCAGACGTTTT-ATCTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199025 18 -  11645122 TTTCAGACGTTTT-ATCTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184247 18 -   6739814 TTTCAGACATTTT-ATCTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74861 18 - 101219884 TTTCAGACGTTTT-ATCTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196423 18 -    785044 TTTCAGACATTTT-ATCTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           84691 18 -  10971483 TTTCAGACATTTT-ATCTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940817 18 -  13128814 TTTCAGACTTCTT-ATCTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671911 18 +  14377064 TTTCAGACTTTTT-GTCTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139627 18 -   9889416 TTTCAGACTTTTT-ATCGT
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           97261 18 +   1229009 TTTCTGACATTTT-ATGTT
i eulFla1.LGHW01000695v1       I 3647 C 0
s otoGar3.GL873528              20770655 18 +  38779656 -TTCTGACTTTGGAATGTC
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22717873 13 -  98207768 TCTCAGGCTCTTA------
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28806985 18 -  39895921 TCTCAGGCTTTTT-ATTTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699601 18 +   6883506 TTTGGGGCTTTTT-ATTTC
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30890801 251 -  47401472 I
e nasLar1.chr2                    159233 432 + 181502896 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=52011.000000
s hg38.chr14_GL000009v2_random    196395 4 +    201709 CAGC
s panTro5.chr9                  41886192 4 + 116767853 CAGC
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42124966 4 -  86207423 CAGC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280354 4 - 204787373 CAGC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179576 4 - 192460366 CAGC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199043 4 -  11645122 CAGC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184265 4 -   6739814 CAGC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74879 4 - 101219884 CAGC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196441 4 -    785044 CAGC
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    159665 4 + 181502896 CAGG
i nasLar1.chr2                 I 432 I 1270
s colAng1.NW_012123820v1           84709 4 -  10971483 CAGG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940835 4 -  13128814 CAGC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671929 4 +  14377064 CAGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139645 4 -   9889416 GAGC
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           97279 4 +   1229009 CAGC
i eulFla1.LGHW01000695v1       C 0 C 0
s otoGar3.GL873528              20770673 4 +  38779656 CAGC
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22717886 4 -  98207768 CAGG
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807003 4 -  39895921 CAGC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699619 4 +   6883506 CAGC
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30890801 251 -  47401472 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e panPan2.chr3                  77851892 0 + 205426864 C
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I
e gorGor5.CYUI01015020v1           11605 0 +  12760026 C

a score=145521.000000
s hg38.chr14_GL000009v2_random    196399 9 +    201709 TACAGAATT
s panTro5.chr9                  41886196 9 + 116767853 TACAGAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851892 9 + 205426864 TACAGAATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11605 9 +  12760026 TACAGAATT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124970 9 -  86207423 TACAGAATT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280358 9 - 204787373 TACAGAATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179580 9 - 192460366 TACAGAATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199047 9 -  11645122 TACAGAATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184269 9 -   6739814 TACAGAATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74883 9 - 101219884 TACAGAATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196445 9 -    785044 TACAGAATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           84713 9 -  10971483 TACAGAATT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940839 9 -  13128814 TACAGAATT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671933 9 +  14377064 TACAGAATT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139649 9 -   9889416 TACAGAATT
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           97283 9 +   1229009 TGCAGAATT
i eulFla1.LGHW01000695v1       C 0 I 233
s otoGar3.GL873528              20770677 9 +  38779656 TACAGAATT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22717890 9 -  98207768 TACAAAATC
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807007 9 -  39895921 TACAGGAAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699623 9 +   6883506 TACAGAATT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30890801 251 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=716573.000000
s hg38.chr14_GL000009v2_random    196408 75 +    201709 TCTCCATCCTTTGAATTATGTTAGAGGGCTTTAGTTGGCCAGTATTGGTGATTCGCCTCCACTAATTCACAACTC
s panTro5.chr9                  41886205 75 + 116767853 TCTCCATCCTTTGAATTATGTTAGCGGGCTTTATTTGGCCAGTATTTGTGATCTACCTCCACTAATTTGCAACTC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851901 75 + 205426864 TCTCCATCCTTTGAATTATGTTAGCGGGCTTTAGTTGCCCAGTATTGGTGATCCGCCTCCACTAATTCACAGCTC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11614 75 +  12760026 TCTCCATCCTTTGAATTATGTTAGCGGGCTTTAGTTGCCCAGTATTGGTGATCCGCCTCCACTAATTCACAGCTC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42124979 75 -  86207423 TCTCCATCCTTTGAATTACGTTAGCTCGCTTTAGTTGCCCAGTGTTGGGCATCCGCTTCCACTAATTCACAGCTC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280367 75 - 204787373 TCTCCATCCTTTGAATTATGTTAGCAGGCTTTAGTTGCCCCGTACTGGGGATCCACTTCCACTACTTCACAACTC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179589 75 - 192460366 TCTCCATCCTTTGAATTATGTTAGCAGGCTTTAGTTGCCCCGTACTGGGGATCCACCTCCACTACTTCACAACTC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199056 75 -  11645122 TCTCCATCCTTTGAATTATGTTAGCAGGCTTTAGTTGCCCCGTACTGGGGATCCACCTCCACTACTTCACAACTC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184278 75 -   6739814 TCTCCATCCTTTGAATTATGTTAGCAGGCTTTAGTTGCCCAGTACTGGGGATCCACCTCCACTACTTCACAACTC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74892 75 - 101219884 TCTCCATCCTTGGAAATATGTTAGCAGGCTTTAGTTGCCCAGTACTGGGGATCCACCTCCACTAATTCACAACTC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196454 75 -    785044 TCTCCATCCTTTGAATTATGTTAGCAGGCTTTAGTTGCCCAGTACTGGGGATCCACCTCCACTACTTCACAACTC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           84722 75 -  10971483 TCTCCATCCTTTGAATCATGTCAGCAGGCTTTAGTTGCCCAGCACTGGGGATCCACCTCCACTAATTCACAACTC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940848 74 -  13128814 CCTCCATTCTTTTAATTATGTTAGCAGG-TTGAGTTGCCCAGCATTGCTGATCCACCTCTAGTAATTCGCGACAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7671942 74 +  14377064 TCTCCATCCTTTTAATTATGTTAGCAGG-TTTAGTTGCCCAGCATTGCTGATCCACCTCTAGTAATTCACGATGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139658 73 -   9889416 TCTCCATCCTTTTAATTATGTTAGCAGG-TTTAGTTGCCCAGCATTGCTGATCCACCTCTAGTAATTCACG-TGC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20770686 74 +  38779656 CTCCTTTCCTTTTCCTTGTGTTGACATAGTCTAGCTGGCCCACATTGTTTATCCACCTCTGCAAATCCCCAATC-
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22717899 74 -  98207768 CCCCTGTGATTTTATTTATGTCA-TGCATTTGAGTTGACATGTGTCACCTTCCCACCTCTGATGATTCACAACTG
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807016 75 -  39895921 CCCCCatttaaaaaattatattaataGCTCTTAGTCACCCAGCATTTCCTATTCACCTTCATTAATTCACAGCTC
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699632 75 +   6883506 CTCCCATCCTTTTAACTATGTTAACAGTTTTTAGTTGTCCAGCATTGCCTATCTACCTCCACTAATTCACACCTC
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30890801 251 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97292 233 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e rhiBie1.NW_016812636v1          152377 654 +   2104565 I

a score=17290.000000
s hg38.chr14_GL000009v2_random    196483 1 +    201709 T
s panTro5.chr9                  41886280 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851976 1 + 205426864 T
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11689 1 +  12760026 T
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125054 1 -  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280442 1 - 204787373 T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179664 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199131 1 -  11645122 T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184353 1 -   6739814 T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74967 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196529 1 -    785044 T
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           84797 1 -  10971483 T
i colAng1.NW_012123820v1       C 0 C 0
s rhiBie1.NW_016812636v1          153031 1 +   2104565 T
i rhiBie1.NW_016812636v1       I 654 I 163
s saiBol1.JH378168              10940922 1 -  13128814 T
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672016 1 +  14377064 T
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139731 1 -   9889416 T
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20770760 1 +  38779656 T
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22717973 1 -  98207768 T
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807091 1 -  39895921 T
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699707 1 +   6883506 T
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30890801 251 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97292 233 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=90703.000000
s hg38.chr14_GL000009v2_random    196484 11 +    201709 ATTGTCTTACC
s panTro5.chr9                  41886281 11 + 116767853 ATTATCTTACC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851977 11 + 205426864 ATTGTATTTAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11690 11 +  12760026 ATTGTATTACC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125055 11 -  86207423 ATTGTACTGCC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280443 11 - 204787373 ATTGTATTACC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179665 11 - 192460366 ATTGTATTACC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199132 11 -  11645122 ATTGTATTACC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184354 11 -   6739814 ATTGTATTACC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    74968 11 - 101219884 ATTGTATTACC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196530 11 -    785044 ATTGTATTACC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           84798 11 -  10971483 ATTATATTACC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10940923 11 -  13128814 ATTATATTTCC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672017 11 +  14377064 ATTATATTTCC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139732 11 -   9889416 ATTGTATTTCC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20770761 11 +  38779656 ATCATAGTTCC
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22717974  4 -  98207768 -------TTCC
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807092 11 -  39895921 ATTACATTTCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699708 10 +   6883506 CTTATATCTC-
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30890801 251 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97292 233 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e rhiBie1.NW_016812636v1          153032 163 +   2104565 I

a score=1830063.000000
s hg38.chr14_GL000009v2_random    196495 150 +    201709 CCCGGGGATGCATTTCCATAGTTCTGCCTTGTTATGAGTGTCATTTTTTTCTTCTG----TTTTGTTGACTGCCATTCA-AATAGTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGT----CACCCCCTCATTTTTTTAACTTCTCATAATTTACTGT-
s panTro5.chr9                  41886292 154 + 116767853 CCCAGGGATGCATTTCCATAGTTCTGCCTTGTTATGAGTGTCATTTTTTTCTTCTG----TTTTGTTGACTGGCATTCA-AGTAGTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTATCACCTCCTAATTTTTTTAGCTTCTCATAATTAACTGT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77851988 154 + 205426864 CCCGGGGATGCATTTCCATAGTTCTGCCTTGTCATGAGTGTCATGTTTTTCTTCTA----TTTTGTTGACTGCCATTCA-AATATTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTGTCACCTCCTCATTTTTTTAGCCTCTCATAATTTACTGT-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11701 155 +  12760026 CCCGGGGATGCATTTCCATAGTTCTGCCTTGTCATGAGTGTCATGTTTTTCTTCTA---TTTTTGTTGACTGCCATTCA-AATATTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTGTCACCTCCTCATTTTTTTAGCCTCTCATAATTTACTGT-
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125066 154 -  86207423 CCTGGGGATGCATTTCCATAGTTCTGCCTTGTTATGAGTGTCATTTTTTTCTTCTA----TTTTGTTGACTGCCATTCA-AATATTTTTG-------GCTTTATCAGAGAGTTTCACTTTATTGTTTGTCACCTCCTCATTTTTTTAGCTTTTCATAATTTACTGT-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280454 153 - 204787373 CCAGGGGATGCATTTCCATAGTTCTGCCTTGTTATGAGTGTCAT-TTTTTCTTCTA----TTTTTTTGACTGCCATTCA-AATATTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTGTCACCTTCTCATTTTTTTAGCTTTTCATAATTCACTGT-
i rheMac8.chr2                 C 0 I 1
s macFas5.chr2                    179676 153 - 192460366 CCAGGGGATGCATTTCCATAGTTCTGCCTTGTTATGAGTGTCAT-TCTTTCTTCTA----TTTTTTTGACTGCCATTCA-AATATTTTTG-------GCTTCATCAGAGATTTTCACTTTATTGTTTGTCACCTTCTCATTTTTTTAGCTTTTCATAATTCACTGT-
i macFas5.chr2                 C 0 I 1
s macNem1.NW_012010856v1          199143 153 -  11645122 CCAGGGGATGCATTTCCATAGTTCTGCCTTGTTATGAGTGTCAT-TTTTTCTTCTA----TTTTTTTGACTGCCATTCA-AATATTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTGTCACCTTCTCATTTTTTTAGCTTTTCATAATTCACTGT-
i macNem1.NW_012010856v1       C 0 I 1
s cerAty1.NW_012001605v1          184365 153 -   6739814 CCAGGGGATGCATTTCCATAGTTCTGCCTTGTTATGAGTGTCAT-TTTTTCTTCTA----GTTTTTTGACTGCCATTCA-AATATTTTTG-------GCTTTATCAGAGATTTTCACTTTGTTGTTTGTCACCACCTCATTTTTTTAGCTTTTCATAATTTGCTGT-
i cerAty1.NW_012001605v1       C 0 I 1
s chlSab2.chr22                    74979 153 - 101219884 CCAGGGGATGCATTTCCATAGTTCTGCCTTGTTATGAGTGTCAT-TTTTTCTTCAA----TTTTTTTGACTGCCATTCA-AATATTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTGTCACCTCCTCATTTTTTTAGCTTTTCATAATTTGCTGT-
i chlSab2.chr22                C 0 I 1
s manLeu1.NW_012099043v1          196541 153 -    785044 CCAGGGGATGCATTTCCATAGTTCTGCCTTGTTATGAGTGTCAT-TTTTTCTTCTA----GTTTTTTGACTGCCATTCA-AATATTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTGTCACCTCCTCATTTTTTTAGCTTTTCATAATTTGCTGT-
i manLeu1.NW_012099043v1       C 0 I 1
s colAng1.NW_012123820v1           84809 153 -  10971483 CCAGGCGATGCGTTTCCATAGCTCTGCCTTGTTATAAGTGTCAT-TTTTTCTTCCA---TTTTTTTTTACTGCCATTCA-AATATTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTGTCACCTCCTCA-TTTGTTAGCTTTTCATAATTTGCTGT-
i colAng1.NW_012123820v1       C 0 I 1
s saiBol1.JH378168              10940934 155 -  13128814 TCAGGGGATGCATTTCCATGGTTCTGCCTTGTTATGAGTCTCATTTTTTCCTTCCA---TTTTCTTTGACTGCCATCCA-AATATTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTGTCACCTCCTCGTTTTTTTAGCATTTCATAATTTACTGT-
i saiBol1.JH378168             C 0 I 1
s cebCap1.NW_016107322v1         7672028 158 +  14377064 TCAGGGAATGCATTTCCATAGTTCTGCCTTGTTATGAGTTTCATTTTTTCCTTCCATTTTTTTTTTTGACTGCCATCCA-AATATTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTGTCACCTCCTCGTTTTTTTAACATTTCATAATTTACTGT-
i cebCap1.NW_016107322v1       C 0 I 1
s aotNan1.NW_018487195v1         4139743 147 -   9889416 TCAGGGGATGGATTTCCATAGTTTTGCCTTGTTATGAG--------TTTCCTTCCA---TTTTTTTTGACTGCCATCCA-AATATTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTGTCACCTCCTCGTTTTTTTAGCATTTCATAATTTACTGT-
i aotNan1.NW_018487195v1       C 0 I 1
s micMur3.chr31                 30891052 153 -  47401472 CCCAGGGATGCATTTTCATAGTTCTGCCTTGTTCTGAGTTGCAT-TTTTCTTTCCA----TTTTTCTGACTGCCATCCA-GACTTTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTGTCACCTCTTTTTTTTCCTAGATTTTCATAATTTACTGA-
i micMur3.chr31                I 251 C 0
s otoGar3.GL873528              20770772 151 +  38779656 CGAGGAGATGCATTTCTGTAGTTCTGCCTTGTTTTGAGTTTCAA-TTTTCTTCTCA----TTTTTTTGAATGCCATCCA-AAACTTTTTG-------GCTTTATCAGAGATTTTCACTTTATTGTTTGCCACCTCCTTTTTT--CTAGAATTTCATAATTTACTGC-
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22717978 153 -  98207768 CCAGCATATGGCTTTCCATAGTTGAGTTTGGCGATTGGTCTTAA-TTTTTCTTTTC--CTTTTCCTAGAGTGCCATCCA-ATTTTGGGGG-------GCCTTATCATAGATTTTCACTTTATTGTTTGTTACTTCCTTTTTTATTTA--TTTTTGTAATTTACTGA-
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807103 152 -  39895921 TCAGGAGACGTATTTCCATAGTTCTGCCTTTATTTATG-------TTTTTCTTACA---GTTTTTTTGACTGCCATCCACAATTTTTTTGTTTTTTTGCTTTATCAGGGATTTTTACTTTGTTACTT----CCTTTTTCCCCCCATAGCTTTTCATAATTTGCTGG-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6699718 128 +   6883506 CCAAGGAATGCATTTCCATAACTTTGTCTCACTATAGGGTTTAT-TTTTCCTTCCA----TCTTTTTGACTGCCATCCA-A---TTTTTG----------------GGGACTTT-------------GTCACCTTTTT-TTCCCCTAGCTTTTTATAATTCACTACT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97292 233 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e rhiBie1.NW_016812636v1          153032 163 +   2104565 I

a score=9156.000000
s hg38.chr14_GL000009v2_random    196645 1 +    201709 A
s panTro5.chr9                  41886446 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852142 1 + 205426864 G
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11856 1 +  12760026 G
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125220 1 -  86207423 G
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280608 1 - 204787373 G
i rheMac8.chr2                 I 1 C 0
s macFas5.chr2                    179830 1 - 192460366 G
i macFas5.chr2                 I 1 C 0
s macNem1.NW_012010856v1          199297 1 -  11645122 G
i macNem1.NW_012010856v1       I 1 C 0
s cerAty1.NW_012001605v1          184519 1 -   6739814 G
i cerAty1.NW_012001605v1       I 1 C 0
s chlSab2.chr22                    75133 1 - 101219884 G
i chlSab2.chr22                I 1 C 0
s manLeu1.NW_012099043v1          196695 1 -    785044 G
i manLeu1.NW_012099043v1       I 1 C 0
s colAng1.NW_012123820v1           84963 1 -  10971483 G
i colAng1.NW_012123820v1       I 1 C 0
s rhiBie1.NW_016812636v1          153195 1 +   2104565 G
i rhiBie1.NW_016812636v1       I 163 I 55
s saiBol1.JH378168              10941090 1 -  13128814 A
i saiBol1.JH378168             I 1 C 0
s cebCap1.NW_016107322v1         7672187 1 +  14377064 A
i cebCap1.NW_016107322v1       I 1 C 0
s aotNan1.NW_018487195v1         4139891 1 -   9889416 G
i aotNan1.NW_018487195v1       I 1 C 0
s micMur3.chr31                 30891205 1 -  47401472 A
i micMur3.chr31                C 0 I 1
s eulFla1.LGHW01000695v1           97525 1 +   1229009 A
i eulFla1.LGHW01000695v1       I 233 I 225
s otoGar3.GL873528              20770923 1 +  38779656 G
i otoGar3.GL873528             C 0 I 1
s mm10.chr16                    22718131 1 -  98207768 A
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28807255 1 -  39895921 G
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6699846 1 +   6883506 G
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=592159.000000
s hg38.chr14_GL000009v2_random    196646 38 +    201709 TTATATCTGCCTGGGCTTTTGGTTCCTTTACAGATTTG
s panTro5.chr9                  41886447 38 + 116767853 TTATATCTGCCTGGGCTTTTGGTTCCTTTACAGATTTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852143 38 + 205426864 TTATATCTGCCTGGGCTTTTGGTTCATTTACAGATTTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11857 38 +  12760026 TTATATCTGCCTGGGCTTTTGGTTCCTTTACAGATTTG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125221 38 -  86207423 TTATATCTGCCTGGGCTTTTGGTTCCTTTACAGATTTG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280609 38 - 204787373 TTATATCTGCCTAGGCTTTTGGTTCCTTTACAGATTTG
i rheMac8.chr2                 C 0 I 19
s macFas5.chr2                    179831 38 - 192460366 TTATATCTGCCTAGGCTTTTGGTTCCTTTACAGGTTTG
i macFas5.chr2                 C 0 I 19
s macNem1.NW_012010856v1          199298 38 -  11645122 TTATATCTGCCTAGGCTTTTGGTTCCTTTACAGATTTG
i macNem1.NW_012010856v1       C 0 I 19
s cerAty1.NW_012001605v1          184520 38 -   6739814 TTATATCTGCCTAGGCTTTTGGTTCCTTTACAGATTTG
i cerAty1.NW_012001605v1       C 0 I 19
s chlSab2.chr22                    75134 38 - 101219884 TTATATCTGCCTAGGCTTTTGGTTCCTTTACAGATTTG
i chlSab2.chr22                C 0 I 19
s manLeu1.NW_012099043v1          196696 38 -    785044 TTATATCTGCCTAGGCTTTTGGTTCCTTTACAGATTTG
i manLeu1.NW_012099043v1       C 0 I 19
s colAng1.NW_012123820v1           84964 38 -  10971483 TTATATCTGCCTAGGCTTTTGGTTCCTTTACAGATTTG
i colAng1.NW_012123820v1       C 0 I 19
s saiBol1.JH378168              10941091 38 -  13128814 TTACATCTGCCCAGGCTTTTGGTTCCTTTACAGATTTG
i saiBol1.JH378168             C 0 I 19
s cebCap1.NW_016107322v1         7672188 38 +  14377064 TTATATCTGCCCAGGCTTTTGGTTCCTTTACAGATTTG
i cebCap1.NW_016107322v1       C 0 I 19
s aotNan1.NW_018487195v1         4139892 38 -   9889416 TTATATCTGCCCAGGCTTTTGGTTCCTTTACAGATTTG
i aotNan1.NW_018487195v1       C 0 I 19
s micMur3.chr31                 30891207 38 -  47401472 TTATATATGCCTAGGCTTTTGGTTCCTTTACAGATTTG
i micMur3.chr31                I 1 I 19
s otoGar3.GL873528              20770925 38 +  38779656 TTATATATGCCTAGGCAGTTGGTTCCCTTACAGATTTG
i otoGar3.GL873528             I 1 I 19
s mm10.chr16                    22718133 36 -  98207768 TTATATCTCCCTAGGCTTAGGG--CCTTTACAGATTTG
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 28807257 38 -  39895921 TTATATCTGCCTAGGCTTTTAGCTCTCTTACAGATTTG
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6699847 38 +   6883506 TTATATCTGTGTAGGCTTTTAGTTCCCTTATAGATTTG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97526 225 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e rhiBie1.NW_016812636v1          153196 55 +   2104565 I

a score=57330.000000
s hg38.chr14_GL000009v2_random    196684 3 +    201709 TTT
s panTro5.chr9                  41886485 3 + 116767853 TTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852181 3 + 205426864 TTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11895 3 +  12760026 TTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125259 3 -  86207423 TTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280666 3 - 204787373 TTT
i rheMac8.chr2                 I 19 C 0
s macFas5.chr2                    179888 3 - 192460366 TTT
i macFas5.chr2                 I 19 C 0
s macNem1.NW_012010856v1          199355 3 -  11645122 TTT
i macNem1.NW_012010856v1       I 19 C 0
s cerAty1.NW_012001605v1          184577 3 -   6739814 TTT
i cerAty1.NW_012001605v1       I 19 C 0
s chlSab2.chr22                    75191 3 - 101219884 TTT
i chlSab2.chr22                I 19 C 0
s manLeu1.NW_012099043v1          196753 3 -    785044 TTT
i manLeu1.NW_012099043v1       I 19 C 0
s colAng1.NW_012123820v1           85021 3 -  10971483 TTT
i colAng1.NW_012123820v1       I 19 C 0
s rhiBie1.NW_016812636v1          153251 3 +   2104565 TTT
i rhiBie1.NW_016812636v1       I 55 I 136
s saiBol1.JH378168              10941148 3 -  13128814 TTT
i saiBol1.JH378168             I 19 C 0
s cebCap1.NW_016107322v1         7672245 3 +  14377064 TTT
i cebCap1.NW_016107322v1       I 19 C 0
s aotNan1.NW_018487195v1         4139949 3 -   9889416 TTT
i aotNan1.NW_018487195v1       I 19 C 0
s micMur3.chr31                 30891264 3 -  47401472 TTT
i micMur3.chr31                I 19 C 0
s otoGar3.GL873528              20770982 3 +  38779656 TTT
i otoGar3.GL873528             I 19 C 0
s mm10.chr16                    22718169 3 -  98207768 TTT
i mm10.chr16                   C 0 I 20
s canFam3.chr31                 28807295 3 -  39895921 TTT
i canFam3.chr31                C 0 I 17
s dasNov3.JH568778               6699885 3 +   6883506 TTT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97526 225 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=1915742.000000
s hg38.chr14_GL000009v2_random    196687 127 +    201709 -------------------CACTTTATTTTTAGCTTATGATACTT-CTAAAGTCTGTATCCTTTTAATTTTCACTTGCTTCTTCGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAGGATGTCTCAGCATCTTG
s panTro5.chr9                  41886488 127 + 116767853 -------------------CATTTTATTTTTAGCTTATGATACTT-CTAAAGTCTGTACCCTTTTAATTTTCACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTTATTTCAAAACACCAGAAAGTAGGATGTCTCAGCATATTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852184 127 + 205426864 -------------------CATTTTATTTTTAGCTTATGATACTT-CTAAAGTCTGTACCCTTTTAATTTTCACTTGCTTCATCATCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAATAAAATGTCTCAGCAGTTTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           11898 127 +  12760026 -------------------CATTTTATTTTTAGCTTATGATACTT-CTAAAGTCTGTACCCTTTTAATTTTCACTTGCTTCATCATCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAATAAAATGTCTTAGCAGTTTG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125262 127 -  86207423 -------------------CATATTATTTTTAGCTTATGATACTT-CTAAAGTCTGTACCCTTTTGATTTTCACTTGCTTCATCTTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280669 127 - 204787373 -------------------CATTTTATTTTTAGCTTATGATACTT-CTAAAGTCTGTACCCTTTTAATTTTCACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    179891 127 - 192460366 -------------------CATTTTATTTTTAGCTTATAATACTT-CTAAAGTCTGTACCCTTTTAATTTTCACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199358 127 -  11645122 -------------------CATTTTATTTTTAGCTTATGATACTT-CTAAAGTCTGTACCCTTTTAATTTTCACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184580 127 -   6739814 -------------------CATTTTATTTTTAGCTTATGATACTT-CTAAAGTCTGTACCCTTTTAATTTTCACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75194 127 - 101219884 -------------------CATTTTATTTTTAGCATATGATACTT-CTAAAGTCTGTACCCTTTTAATTTTCACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196756 127 -    785044 -------------------CATTTTATTTTTAGCTTATGATACTT-CTAAAGTCTGTACCCTTTTAATTTTCACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85024 127 -  10971483 -------------------CATTTTATTTTTAGCTTATGATACTT-CTAAAGTCTGTACCCTTTTAATTTTCACTTGCTTCATTGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941151 128 -  13128814 -------------------CATTTTATTTTTAGCTCATGGTACTTGCAAAAGTCTGTACCCTTTTAATTTTCACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGTTTG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672248 128 +  14377064 -------------------CATTTTATTTTTAGCTCATGATACTTGCAAAAGTCTGTACCCTTTTAATTCTCACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGTTTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4139952 128 -   9889416 -------------------CATTTTATTTTTAGCTCGTGATACTTGCAAAAGTCTGTACCCTTTTAATTTTCACTTGCTTCATCGTCACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGTTTG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30891267 128 -  47401472 -------------------CATTTTATTTTTAGTTCATGATACTTGCAAAAGTCTGTACCCTTTTGATTTTCACTTGCTTCATCATCACATTCTTGTGTTTTGTTTTCATTTTAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTG
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20770985 128 +  38779656 -------------------CATTTTATTTTTAGTTCATGGTACTTGCAGAAGTCTGTACCCTTTTGATTTTCACTTGCTTCTTCCTCACATTCTTGTGTTTTGTTTACATTTTAAAATACCAGAAATTAAAATGTCTCAGCAGCTTG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22718192 122 -  98207768 -------------------CCTTTTATTTTTAGCTCATGATACTT-GCAAAGTCTGTACCCTTTTGATTT----CTACTTCATATTCACATTTGCATGTTTTGTTTTTATCTTAAAATACCAAAAACTAAG-TGTCTCAGCCACTTG
i mm10.chr16                   I 20 C 0
s canFam3.chr31                 28807315 128 -  39895921 -------------------TCATTTATTTTTAGCTCATGATACTTGCAAAAGTCTGTACCCTTTTGATTTTCACTTGCTTCATTGACACATTCTTGTGTTTTGTTTTCATTTCAAAATACCAGAAAGTAAAATGTCTCAGCAGCTTG
i canFam3.chr31                I 17 C 0
s dasNov3.JH568778               6699888 145 +   6883506 TTAAGAATTCAAACTTTTGAATTTTATTTTTAGCTCATGATGCTTGAAAATGACTGTACCCTTTTGATTT-CACTTACTTTATCATCACACTCTTGTGTTTTGTTTTTATTTTAAAATACCAGAAAGTAAAA-GTCTCAGCAACTTG
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97526 225 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e rhiBie1.NW_016812636v1          153254 136 +   2104565 I

a score=125891.000000
s hg38.chr14_GL000009v2_random    196814 10 +    201709 GTGAGTGGAA
s panTro5.chr9                  41886615 10 + 116767853 GTGAGTGGAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852311 10 + 205426864 GTGAGTGGAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12025 10 +  12760026 GTGAGTGGAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125389 10 -  86207423 GTGAGTGGAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280796 10 - 204787373 GATAGTGAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180018 10 - 192460366 GATAGTGAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199485 10 -  11645122 GATAGTGAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184707 10 -   6739814 GATAGTGGAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75321 10 - 101219884 GATAGTGGAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196883 10 -    785044 GATAGTGGAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85151 10 -  10971483 GTTAGTGGAA
i colAng1.NW_012123820v1       C 0 C 0
s rhiBie1.NW_016812636v1          153390 10 +   2104565 GTTAGTGGAA
i rhiBie1.NW_016812636v1       I 136 I 36
s saiBol1.JH378168              10941279 10 -  13128814 GTGAGTAGAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672376 10 +  14377064 GTGAGTAGAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140080 10 -   9889416 GTGAGTAGAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30891395 10 -  47401472 GTAAGTGAAA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20771113 10 +  38779656 GTAAGTAGAA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22718314 10 -  98207768 GAAAGTAGAT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807443 10 -  39895921 GTGAGTGGAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700033 10 +   6883506 GTAAGTGGAA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97526 225 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=172862.000000
s hg38.chr14_GL000009v2_random    196824 17 +    201709 TAGTTTATTT--------ATAATC----C
s panTro5.chr9                  41886625 17 + 116767853 TAGTTTATTT--------ATAATC----C
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852321 17 + 205426864 TAGTTCATTT--------ATAATC----C
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12035 17 +  12760026 TAGTTTATTT--------ATAATC----C
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125399 17 -  86207423 TAGTTTATTT--------ATAATC----C
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280806 16 - 204787373 TAGTTTATTT--------ATAATT-----
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180028 16 - 192460366 TAGTTTATTT--------ATAATT-----
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199495 17 -  11645122 TAGTTTATTT--------ATAATT----C
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184717 17 -   6739814 TAGTTTATTT--------ATAATT----C
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75331 17 - 101219884 TAGTTTATTT--------ATAATT----C
i chlSab2.chr22                C 0 I 3
s manLeu1.NW_012099043v1          196893 17 -    785044 TAGTTTATTT--------ATAATT----C
i manLeu1.NW_012099043v1       C 0 I 6
s colAng1.NW_012123820v1           85161 17 -  10971483 TAGTTTATTT--------ATAATT----C
i colAng1.NW_012123820v1       C 0 I 5
s saiBol1.JH378168              10941289 25 -  13128814 TAGttttttttttttttaataatt----a
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672386 19 +  14377064 TAGTTTTTTTTT------ATAATT----A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140090 23 -   9889416 TAGTTTTTTTTT------ATAATTAAAAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30891405 17 -  47401472 TAGTTTATTT--------ATAATT----C
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20771123 17 +  38779656 TAGTTTATTT--------aaaaaa----a
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22718324 17 -  98207768 TAGtttattt--------ataatt----a
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807453 12 -  39895921 -----TATTT--------ATAATT----C
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700043 15 +   6883506 --ATTTATTT--------ATAATC----T
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97526 225 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e rhiBie1.NW_016812636v1          153400 36 +   2104565 I

a score=32806.000000
s hg38.chr14_GL000009v2_random    196841 2 +    201709 AA
s panTro5.chr9                  41886642 2 + 116767853 AA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852338 2 + 205426864 AA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12052 2 +  12760026 AA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125416 2 -  86207423 AA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280822 1 - 204787373 -C
i rheMac8.chr2                 C 0 I 3
s macFas5.chr2                    180044 1 - 192460366 -A
i macFas5.chr2                 C 0 I 3
s macNem1.NW_012010856v1          199512 2 -  11645122 AA
i macNem1.NW_012010856v1       C 0 I 3
s cerAty1.NW_012001605v1          184734 2 -   6739814 AA
i cerAty1.NW_012001605v1       C 0 I 3
s chlSab2.chr22                    75351 2 - 101219884 AA
i chlSab2.chr22                I 3 I 3
s manLeu1.NW_012099043v1          196916 2 -    785044 aa
i manLeu1.NW_012099043v1       I 6 I 3
s colAng1.NW_012123820v1           85183 2 -  10971483 AA
i colAng1.NW_012123820v1       I 5 I 3
s rhiRox1.KN295142v1              146093 2 -   1702164 aa
i rhiRox1.KN295142v1           N 0 N 0
s rhiBie1.NW_016812636v1          153436 2 +   2104565 aa
i rhiBie1.NW_016812636v1       I 36 I 3
s saiBol1.JH378168              10941314 2 -  13128814 aa
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672405 2 +  14377064 AA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140113 2 -   9889416 AA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30891422 2 -  47401472 AA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20771140 2 +  38779656 aa
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22718341 2 -  98207768 aa
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807465 2 -  39895921 AA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700058 2 +   6883506 AA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97526 225 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=8090.000000
s hg38.chr14_GL000009v2_random    196843 1 +    201709 -A
s panTro5.chr9                  41886644 1 + 116767853 -A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852340 1 + 205426864 -A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12054 1 +  12760026 -A
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125418 1 -  86207423 -A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280826 1 - 204787373 -A
i rheMac8.chr2                 I 3 C 0
s macFas5.chr2                    180048 1 - 192460366 -A
i macFas5.chr2                 I 3 C 0
s macNem1.NW_012010856v1          199517 1 -  11645122 -A
i macNem1.NW_012010856v1       I 3 C 0
s cerAty1.NW_012001605v1          184739 1 -   6739814 -A
i cerAty1.NW_012001605v1       I 3 C 0
s chlSab2.chr22                    75356 1 - 101219884 -A
i chlSab2.chr22                I 3 C 0
s manLeu1.NW_012099043v1          196921 1 -    785044 -a
i manLeu1.NW_012099043v1       I 3 C 0
s colAng1.NW_012123820v1           85188 1 -  10971483 -A
i colAng1.NW_012123820v1       I 3 C 0
s rhiBie1.NW_016812636v1          153441 1 +   2104565 -a
i rhiBie1.NW_016812636v1       I 3 C 0
s saiBol1.JH378168              10941316 1 -  13128814 -a
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672407 1 +  14377064 -A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140115 1 -   9889416 -A
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30891424 1 -  47401472 -A
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20771142 1 +  38779656 -a
i otoGar3.GL873528             C 0 I 6
s mm10.chr16                    22718343 1 -  98207768 -a
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807467 1 -  39895921 -A
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700060 1 +   6883506 T-
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97526 225 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=16412.000000
s hg38.chr14_GL000009v2_random    196844 7 +    201709 AAAATCC
s panTro5.chr9                  41886645 5 + 116767853 AAAA--C
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852341 6 + 205426864 AAAA-AC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12055 5 +  12760026 AAAA--A
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125419 5 -  86207423 GAAA--A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280827 4 - 204787373 AAAA---
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180049 4 - 192460366 AAAA---
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199518 4 -  11645122 AAAA---
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184740 4 -   6739814 AAAA---
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75357 4 - 101219884 AAAA---
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196922 4 -    785044 aaaa---
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85189 4 -  10971483 AAAA---
i colAng1.NW_012123820v1       C 0 C 0
s rhiBie1.NW_016812636v1          153442 4 +   2104565 aaaa---
i rhiBie1.NW_016812636v1       C 0 N 0
s saiBol1.JH378168              10941317 4 -  13128814 aaat---
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672408 4 +  14377064 AAAT---
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140116 4 -   9889416 AAAA---
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30891425 4 -  47401472 AAAA---
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           97751 4 +   1229009 AAAA---
i eulFla1.LGHW01000695v1       I 225 I 254
s otoGar3.GL873528              20771149 4 +  38779656 aaaa---
i otoGar3.GL873528             I 6 C 0
s mm10.chr16                    22718344 4 -  98207768 aaaa---
i mm10.chr16                   C 0 I 1
s canFam3.chr31                 28807468 4 -  39895921 AAAA---
i canFam3.chr31                C 0 I 3
s dasNov3.JH568778               6700061 2 +   6883506 GA-----
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=622030.000000
s hg38.chr14_GL000009v2_random    196851 53 +    201709 CCCATACTTTTTGTGAGCTATCTGCTTCTAAGTAAAAATTTTATATATAAATT
s panTro5.chr9                  41886650 53 + 116767853 CCCATACTTTTTGTGAGCTATCTGCTTCTGAGTAAAAATTTTATATATAAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852347 53 + 205426864 CCCATACTTTTTGTGAGCTATCTGTTTATAAGTAAAAATTTTATATATAAATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12060 53 +  12760026 CCCATACTTTTTGTGAGCTATCTGCTTATAAGTAAAAATTTTATATATAAATT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125424 53 -  86207423 CCCATACTTTTTGTGAGCTATCTGCTTATAAGTAAAAATTTTATATAGAAATT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280831 53 - 204787373 ACCATACTTTTTGTGAGCTCTCTGCTTATAAGTAAAAATTTCATTTATAAATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180053 53 - 192460366 ACCATACTTTTTGTGAGCTCTCTGCTTATAAGTAAAAATTTCATTTATAAATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199522 53 -  11645122 ACCATACTTTTTGTGAGCTCTCTGCTTATAAGTAAAAATTTCATTTATAAATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184744 53 -   6739814 CTCATACTTTTTGTGAGCTCTCTGCTTATAAGTAAAAATTTCATTTATAAATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75361 53 - 101219884 ACCATACTTTTTGTGAGCTCTCTGCTTATAAGTAAAAATTTCATTTATAAATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196926 53 -    785044 aCCATACTTTTTGTGAGCTCTCTGCTTATAAGTAAAAATTTCATTTATAAATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85193 53 -  10971483 CCCATACTTTTTGTGAGCTCTCTGCTTATAAGTAAAAATTTCATTTATAAATT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941321 52 -  13128814 -CCATACTTTTAGTGACATATCTGCTTATAAGTTAAAATTTTATGTATAAATT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672412 52 +  14377064 -CCATACTTTTAGTGACATATCTGCCGATAAGTTAAAATTTTATGTATAAATT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140120 52 -   9889416 -CTATACGTTTAGTGACATATCTGCTTATAAGTTAAAATTTTTTGTATAAATT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30891429 51 -  47401472 --CTTACTTTTTGTGAGATATCTGCATATAAGTTAAAAATTTATGTATAAATT
i micMur3.chr31                C 0 I 125
s otoGar3.GL873528              20771153 53 +  38779656 aaCTTACTTTTTGGGAGATAGCTGCTTATAAGTTAAAATTTTATGTATAGATT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22718349 49 -  98207768 ttCTTACTTACAGCAAG----CTACTCACAAGTTAAACTTTAATGTATAAATT
i mm10.chr16                   I 1 C 0
s canFam3.chr31                 28807475 50 -  39895921 ---TTACTTTTTTGGACATATTTGCTTATAGGTTAAAATCTTTTGTATAAATT
i canFam3.chr31                I 3 C 0
s dasNov3.JH568778               6700063 52 +   6883506 -TCTTACTTTTTGAGAAAAAGCCACTTATAGGTTAAAATCTTGTATGTAAATT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97755 254 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=1227716.000000
s hg38.chr14_GL000009v2_random    196904 133 +    201709 CTTG---AAAAAAATATTAAA--CTTCTGAGGGATT--GAATGAGATTTTAAA-----------AATCATTCTATA--------CAACAATGGGTGCAAAATTTGTATTCCTCTACTCAAGAGAAA----TCATGAACAT---TTTTTATTAGTTTACTAACATCT
s panTro5.chr9                  41886703 133 + 116767853 CTTG---AAAAAAATCTTAAA--CTTCTGAGGGATT--GAATGAGATTTTAAA-----------AATCATACTATA--------CAACAACAGGTGCAAAATTTGTATTCCTCTACTCAAGAGAAA----TAATGAACAT---TTGTTATTAGTTTACTAACATCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852400 138 + 205426864 CTTG--AAAAAAAATCTTAAA--TTTCTGGGGGATT--GAATGAGATTTTAAA-----------AATCATTCTATA--------CAACAACAGGTGCAAATTTTGTATTCCTCTACTCAAGAGAAATAATTAATGAACAT---TTGTTATTAGTTTACTAACATCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12113 133 +  12760026 CTTG--AAAAAAAATCCTAAA--TTTCTGGGGGATT--GAATGAGATTTTAAA-----------AATCATTCTATA--------CAACAACAGGTGCAAAATTTGTATTC-----CTCAAGAGAAATAATTAATGAACAT---TTGTTATTAGTTTACTAACATCT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125477 134 -  86207423 CTTG--GAAAAAAATCTTAAA--TTTCTGGGGGATT--GAAAGAGATTTTAAA-----------AATCATTCTATA--------CAACAACAGTTGCAAAATTTGTATTCCTCTACTCAAGAGAAA----TAATGAACAT---TTGTTATTAGTTTACTAACATCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204280884 138 - 204787373 CCTG--AAAAAAACCCTTAAA--TTTCTGGGGGATT--GAATGAGATTTGAAA-----------AATCATTCCATA--------CAATGATGGGTGCAAAATTTGTATTCCTCTACTCAAGAGAAATAATTAACGAACAT---TTGTTATTAGTTTACTAACATCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180106 138 - 192460366 CCTG--AAAAAAACCCTTAAA--TTTCTGGGGGATT--GAATGAGATTTGAAA-----------AATCATTCCATA--------CAACGATGGGTGCAAAATTTGTATTCCTCTACTCAAGAGAAATAATTAACGAACAT---TTGTTATTAGTTTACTAACATCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199575 138 -  11645122 CCTG--AAAAAAACCCTTAAA--TTTCTGGGGGATT--GAATGAGATTTGAAA-----------AATCATTCCATA--------CAACGATGGGTGCAAAATTTGTATTCCTCTACTCAAGAGAAATAATTAACGAACAT---TTGTTATTAGTTTACTAACATCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184797 138 -   6739814 CCTG--AAAAAAACCCTTAAA--TTTCTGGGGGATT--GAATGAGATTTAAAA-----------CATCATTCCATA--------CAACGATGGGTGCAAAATTTGTATTCCTCTACTCAAGAGAAAtaattaatgaacat---ttgttattagtttactaacatct
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75414 137 - 101219884 CCTG---AAAAAAAACTTAAA--TTTCTGGGGGATT--GAAGGAGATTTAAAA-----------AATCATTCCATA--------CAACGATGGGTGCAAAATTTGTATTCCTCTACTCAAGAGAAATAATTAATGAACAT---TTGTTATTAGTTTACTAACATCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          196979 138 -    785044 CCTG--TAAAAAAACCTTAAA--TTTCTGGGGGATT--GAATGAGATTTAAAA-----------AATCATTCCATA--------CAACGATGGGTACAAAATTTGTATTCCTCTACTCAAGAGAAATAATTAACGAACAT---TTGTTATTAGTTTACTAACATCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85246 138 -  10971483 CTTG--GAAAAAAACCTTAAA--TTTCTGGGGGATT--GAACGAGATTTTAAA-----------AATCATTCCATA--------CAACGACGGGTGCAAAATTTGTATTCCTCTTCTCAAGAGAAATAATTAATGAACAT---TTGTTATTAGTTTACTAACGTCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941373 139 -  13128814 CTTG--AAAAAACA--TTAAA--TTTCTGGGGGATA--AAATGACATTTTAAG-----------AAGCATTCTATA--------CAATGACAGGTACAAAATTTGTATTCCTATACTCAAGAGAAATAATTAATGAACATTTGTTGTTATTAGTTTACTAACACCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672464 139 +  14377064 CTTG--AAAAAACA--TTAAA--TTTCTGGGGGATA--AAATGACATTTTAAG-----------AAGCATTCTATA--------CAATGATGGGCACAAAATTTGTATTCCTATACTCAAGAGAAATAATTAATGAACATTTGTTGTTATTAGTTTACTAACACCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140172 134 -   9889416 CTTG--AAAAAAAA---TAAA--TTTCTGGGGGATA--AAATGACATTTTAAG-----------AAGCATTCTATA--------CAATGATGGGTACAAAATTTGTATTCCTATACTCAAGAGAAA----TAATGAACATTTGTTGTTATTAGTTTACTAACACCT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20771206 123 +  38779656 ------ACTAAAATCCTAAAA--TTTGTGTGGGATT--GACTTTTTTTT----------------ATCATTCTATG--------AAACCTTTGGTACAAAATGTTTATTCCTTTGCTCCAAGGATA----TAATAAACAT---GTATTATTAG--TAGTACCATGA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22718398 121 -  98207768 CCTG-----AAATATTTAAAA--CCTCTGAGGAATT--GGCACATATCC----------------CTTATTTTGTG--------AAACTACTGATGC-AATTTTGTATTCATCTAATTAGtaaaaataaataacaaatat---ttattattaa-----tGACA---
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807525 154 -  39895921 CCTGGGGGAAAAAATCTTAAC--TTTCTAGGGAATT--GACACTTTTTTTTAATCATTAAATGCAATCATTCTATGATATCATTCTATATCAGGTACGATATTTGTATTTCTCCACCGAGGGGAAATAATTAACAACGAT---TTGTTATTAA-----TGACATCT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700115 132 +   6883506 CCTT----AAAACATCTTAAAATTTTTTGAGAGGTTTATACTGATATTCTTTT------------ATTATTCTATG--------CAACTTTTGGTGCAATATTTTTATTCTCTCACTCAAGGGAAATGATTAAC--ATGT---TTGTTATTAGTATA-----ATCT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30891480 125 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97755 254 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=330274.000000
s hg38.chr14_GL000009v2_random    197037 23 +    201709 AAATATTAATGTATTCAATTATA
s panTro5.chr9                  41886836 23 + 116767853 AAATGTTAATGTATTCAATTATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852538 23 + 205426864 AAATGTTAATGTATTCAATTACA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12246 23 +  12760026 AAATGTTAATGTATTCAATTACA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125611 23 -  86207423 AAATGTTAATGTATTCAATTATA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281022 23 - 204787373 AAATGTTAATGTATTCAATTATA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180244 23 - 192460366 AAATGTTAATGTATTCAATTATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199713 23 -  11645122 AAATGTTAATGTATTCAATTATA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184935 23 -   6739814 aaatgttaatgtattcaattata
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75551 23 - 101219884 AAATGGTAATGTATTCAATTATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197117 23 -    785044 AAATGTTAATGTATTCAATTATA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85384 23 -  10971483 AAATGTTAATGTATTCAATTATA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941512 23 -  13128814 AAATGTTAATGTATTCAGTTATA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672603 23 +  14377064 AAATGTTAATGTATTCAGTTATA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140306 23 -   9889416 AAATGTCAATGTATTCAGTTATA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30891605 23 -  47401472 AAATGTTAATGTATTCAATTATA
i micMur3.chr31                I 125 C 0
s otoGar3.GL873528              20771329 23 +  38779656 AAATGTTAATGTATTCGGTTATA
i otoGar3.GL873528             C 0 I 358
s mm10.chr16                    22718519 16 -  98207768 ----ACTAATGTGTTTTATT---
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807679 23 -  39895921 AAATGTTAATGTATTCAATTAGA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700247 23 +   6883506 AAATGTTAATGGAATCAGTTATA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97755 254 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=50047.000000
s hg38.chr14_GL000009v2_random    197060  7 +    201709 TATT-----ATT-
s panTro5.chr9                  41886859  7 + 116767853 CATT-----ATT-
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852561  7 + 205426864 CATT-----ATT-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12269  7 +  12760026 CATT-----ATT-
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125634  7 -  86207423 CATT-----ATT-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281045  7 - 204787373 CATT-----ATT-
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180267  7 - 192460366 CATT-----ATT-
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199736  7 -  11645122 CATT-----ATT-
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184958  7 -   6739814 cgtt-----att-
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75574  7 - 101219884 CATT-----ATT-
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197140  7 -    785044 CGTT-----ATT-
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85407  7 -  10971483 CATG-----ATT-
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941535 12 -  13128814 CATTATACAATT-
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672626 12 +  14377064 CATTATACAATT-
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140329 12 -   9889416 CATTATACAATT-
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30891628  7 -  47401472 CATT-----ATT-
i micMur3.chr31                C 0 C 0
s mm10.chr16                    22718535  7 -  98207768 CATC-----ATT-
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807702  7 -  39895921 TATT-----ATT-
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700270  5 +   6883506 --------GATTA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97755 254 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I
e otoGar3.GL873528              20771352 358 +  38779656 I

a score=153930.000000
s hg38.chr14_GL000009v2_random    197067 12 +    201709 AAAACACGATTA
s panTro5.chr9                  41886866 12 + 116767853 AAAACACGATTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852568 12 + 205426864 AAAACACAATTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12276 12 +  12760026 AAAACACAATTA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125641 12 -  86207423 AAAACACAATTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281052 12 - 204787373 AAAACACAATTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180274 12 - 192460366 AAAACACAATTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199743 12 -  11645122 AAAACACAATTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184965 12 -   6739814 aaAACACGATTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75581 12 - 101219884 AAAACACAATTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197147 12 -    785044 AAAACACGATTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85414 12 -  10971483 AAAACATGATTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941547 12 -  13128814 AAAACACCATTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672638 12 +  14377064 AAAACATTATTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140341 12 -   9889416 AAAACACCATTA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30891635 12 -  47401472 GAAACACTATTA
i micMur3.chr31                C 0 I 313
s otoGar3.GL873528              20771710 12 +  38779656 aaaaCATTATTA
i otoGar3.GL873528             I 358 C 0
s mm10.chr16                    22718542 12 -  98207768 ATATCAATTTTT
i mm10.chr16                   C 0 I 4
s canFam3.chr31                 28807709 12 -  39895921 AAAACACTATTA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700275 11 +   6883506 -AAACACTATTA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97755 254 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=256230.000000
s hg38.chr14_GL000009v2_random    197079 31 +    201709 AGCTT---AAG---AGGT---GGAAAAGTATAAA-ACAAAC
s panTro5.chr9                  41886878 31 + 116767853 AGCTT---AAG---AGGT---GGAAAAGTGTAAA-ACAAAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852580 31 + 205426864 AGCTT---AAG---AGGT---GGAAAAGTATAAA-ACAAAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12288 31 +  12760026 AGCTT---AAG---AGGT---GGAAAAGTATAAA-ACAAAC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125653 31 -  86207423 AGCTT---AAG---AGGT---GGAAAAGTATAAA-ACTAAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281064 31 - 204787373 AGCTT---AAG---AAGT---GGAAAAGTATAAA-ACAAAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180286 31 - 192460366 AGCTT---AAG---AAGT---GGAAAAGTATAAA-ACAAAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199755 31 -  11645122 AGCTT---AAG---AAGT---GGAAAAGTATAAA-ACAAAC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          184977 31 -   6739814 AGCTT---AAG---AAGT---GGAAAAGTATAAA-ACAAAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75593 31 - 101219884 AGCTT---AAG---AAGT---GGAAAAGTATAAA-ACAAAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197159 31 -    785044 AGCTT---AAG---AAGT---GGAAAAGTATAAA-ACAAAC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85426 31 -  10971483 AGCTC---AAG---AGGT---GGAAAAGTATAAA-ACAAAC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941559 27 -  13128814 AGCCT---AAG---ACAT---GGAAAAGTATAA-----AAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672650 27 +  14377064 AGCCT---AAG---ATAT---GGAAAAGTATAA-----AAC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140353 27 -   9889416 AGCCT---AAG---ACAT---GGAAAAGTATAA-----AAC
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20771722 34 +  38779656 AGCATGACAAG---ACAT---AGAAGAGCGTGGA-AGAAAA
i otoGar3.GL873528             C 0 I 1
s mm10.chr16                    22718558 26 -  98207768 AATTT---A-----ATGT---GGACAGGCATAGATAC----
i mm10.chr16                   I 4 I 5
s canFam3.chr31                 28807721 29 -  39895921 AGC-----AAGTGAACAT---GGAAAAGTATAAA----AAC
i canFam3.chr31                C 0 I 4
s dasNov3.JH568778               6700286 34 +   6883506 AGCCT---AAG---TGGCCAAGGAAAAGCATATA-ACAAAA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30891647 313 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           97755 254 +   1229009 I
e eulMac1.LGHX01000692v1           92302 4468 +   1212331 I

a score=80980.000000
s hg38.chr14_GL000009v2_random    197110 7 +    201709 AAGTGGA
s panTro5.chr9                  41886909 7 + 116767853 AAGTGTA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852611 7 + 205426864 AAGTGTA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12319 7 +  12760026 AAGTGTA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125684 7 -  86207423 AAGTGCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281095 7 - 204787373 AAGTGTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180317 7 - 192460366 AAGTGTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199786 7 -  11645122 AAGTGTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185008 7 -   6739814 AAGTGTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75624 7 - 101219884 AAGTGTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197190 7 -    785044 AAGTGTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85457 7 -  10971483 AAGTGTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941586 7 -  13128814 AAGTGTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672677 7 +  14377064 AAGTGTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140380 7 -   9889416 ATGTGTA
i aotNan1.NW_018487195v1       C 0 C 0
s eulMac1.LGHX01000692v1           96770 7 +   1212331 AAACAAA
i eulMac1.LGHX01000692v1       I 4468 N 0
s eulFla1.LGHW01000695v1           98009 7 +   1229009 AAACAAA
i eulFla1.LGHW01000695v1       I 254 I 526
s otoGar3.GL873528              20771757 7 +  38779656 AAGTGTA
i otoGar3.GL873528             I 1 C 0
s mm10.chr16                    22718589 7 -  98207768 AAGTACA
i mm10.chr16                   I 5 C 0
s canFam3.chr31                 28807754 7 -  39895921 AAGTATA
i canFam3.chr31                I 4 C 0
s dasNov3.JH568778               6700320 5 +   6883506 GAGTT--
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30891647 313 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I

a score=722533.000000
s hg38.chr14_GL000009v2_random    197117 68 +    201709 TAATCTACCTTTATTAATATGAAACA-TCTTTTTCTCTCCT-GAAAATAAAGATTAACC-AGGGGTGTGCT
s panTro5.chr9                  41886916 68 + 116767853 TAATTTACCTTTATTCATATGAAACA-TCTTTTTCTCTCCC-GAAAATAAAGATTAACC-AGTGGTATGCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852618 68 + 205426864 TAATTTACCTTTATTCATATGAAATA-TCTTTTTCTCTCCT-GAAAATAAAGATGAGCC-AGTGGTGTGCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12326 68 +  12760026 TAATTTACCTTTATTCATATGAAACA-TCTTTTTCTCTCCT-GAAAATAAAGATGAGCC-AGTGGTGTGCT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125691 68 -  86207423 TAATTTACCTTTATTCATATGAAACA-TCTTTTTCTCTCCT-GAAAATAGAGATTAACT-AGTGGTGTGCT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281102 67 - 204787373 TAATTTACCTTTATTCATACGAAACA-TCTTTTTCTCTGCT-GAAAATAAAGATTAGCC-AGT-GTATGCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180324 67 - 192460366 TAATTTACCTTTATTCATACGAAACA-TCTTTTTCTCTGCT-GAAAATAAAGATTAGCC-AGT-GTATGCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199793 67 -  11645122 TAATTTACCTTTATTCATACGAAACA-TCTTTTTCTCTGCT-GAAAATAAAGATTAGCC-AGT-GTATGCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185015 67 -   6739814 TAATTTACCTTTATTCATACGAAACA-TCTTTTTCTCTGCT-GAAAATAAAGATTAGCC-AGT-GTATGCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75631 67 - 101219884 TAATTTACCTTTATTCATACGAAACA-TCTTTTTCTCTGCT-GCAAATAAAGATTAGCC-AGT-ATATGCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197197 67 -    785044 TAATTTACCTTTATTCATACGAAACA-TCTTTTTCTCTGCT-GAAAATAAAGATTAGCC-AGT-GTATGCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85464 67 -  10971483 TAATTTACCTTTATTCATATGAAACA-TCTTTTTCTCTGCT-GAAAATAAAGATTAGCC-AGT-GTATGCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941593 68 -  13128814 TAATTTACCTTTATTCATATGAAACA-TCTTGCTCTGTCAT-GAAAAGAAAGATTACCC-ACTGGTGTGCT
i saiBol1.JH378168             C 0 I 1
s cebCap1.NW_016107322v1         7672684 68 +  14377064 TAATTTACATTTATTCATACGAAACA-TCTTGTTCTCTCAT-GAAAAGGAAGATTAACC-AGTGGTGTGCT
i cebCap1.NW_016107322v1       C 0 I 186
s aotNan1.NW_018487195v1         4140387 68 -   9889416 TAATTTACCTTTATTCATATGAAACA-TCTTGTTCTCTCAT-GAAAAGAAAGATTAACC-AATGATGTGCT
i aotNan1.NW_018487195v1       C 0 I 1
s otoGar3.GL873528              20771764 68 +  38779656 TAATTTACGTTTATTCATATCAGACA-TCTTTTCCTCCCAT-GAAAATAAAGATTAACC-AGTGATGTGCT
i otoGar3.GL873528             C 0 I 14
s mm10.chr16                    22718596 65 -  98207768 TAGTTTTCCATTATTCATGTTAG-----TTTTTTTTCTGATAAAAAATAAGGATTTACC-TTAGAAATACT
i mm10.chr16                   C 0 I 6
s canFam3.chr31                 28807761 70 -  39895921 TAGTTTACCTTTATTCATAATAGACCTTTTTTTTCTCTTCT-GCAAATGAAGAGTAGCCTGGTGGTGTACT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700325 68 +   6883506 TAATTCACCTGTATTCACAGCAGGCA-TATTTTTCTCCTCT-GAAAATAAAGAGCAATT-Tgtggtgtgct
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30891647 313 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I

a score=302847.000000
s hg38.chr14_GL000009v2_random    197185 35 +    201709 GGGG------C--------------GGGAGGGGGTGTGTTGGAGGGAGAAAAGCC
s panTro5.chr9                  41886984 35 + 116767853 GAGG------C--------------GGGTGTGGGTGTGTTGGAGGGAGAAAAGCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852686 35 + 205426864 GGGG------C--------------GGGAGGGGGTGTGTTggagggagaaaagcc
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12394 35 +  12760026 GGGG------C--------------GGGAGGGGGTGTGTTggagggagaaaagcc
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125759 35 -  86207423 GGGG------C--------------GGGAGGGGGTGTGTTggagggagaaaagcc
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281169 35 - 204787373 GGGG------C--------------GGGAGGGGGTGTGctggagggagaaaagcc
i rheMac8.chr2                 C 0 I 149
s macFas5.chr2                    180391 35 - 192460366 GGGG------C--------------GGGAGGGGGTGTGctggagggagaaaagcc
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          199860 35 -  11645122 GGGG------C--------------GGGAGGGGGTGTGctggagggagaaaagcc
i macNem1.NW_012010856v1       C 0 I 149
s cerAty1.NW_012001605v1          185082 35 -   6739814 GGGG------C--------------GGGAGGGGGTGTGctggagggagaaaagcc
i cerAty1.NW_012001605v1       C 0 I 149
s chlSab2.chr22                    75698 35 - 101219884 GGGG------C--------------GGGAGGGGGTGTGctggagggagaaaagcc
i chlSab2.chr22                C 0 I 149
s manLeu1.NW_012099043v1          197264 35 -    785044 GGGG------C--------------GGGAGGGGGTGTGctggagggagaaaagcc
i manLeu1.NW_012099043v1       C 0 I 149
s colAng1.NW_012123820v1           85531 35 -  10971483 GGAG------C--------------GGGAGGGGGTGTGCTGAAGGGagaaaagcc
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941662 35 -  13128814 GGAG------C--------------AGGAGGGGGTGTGTTggagggagaagagcc
i saiBol1.JH378168             I 1 C 0
s aotNan1.NW_018487195v1         4140456 35 -   9889416 GGGG------C--------------AGGAGGGGGTGTGTCggagggagaagggcc
i aotNan1.NW_018487195v1       I 1 C 0
s otoGar3.GL873528              20771846 38 +  38779656 GGGGACATCCC--------------AGGAGGG---Atgtgggaaggagaaaagcc
i otoGar3.GL873528             I 14 C 0
s mm10.chr16                    22718667 38 -  98207768 GGGA------CTA-----------AAGGAGAGAATGTGTAGAGGGTGAAAAAGGC
i mm10.chr16                   I 6 C 0
s canFam3.chr31                 28807831 43 -  39895921 ------------AGCATACTGACTGGGGGAGAAGAGtgaggaaaggagaaaagcc
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700393 32 +   6883506 -----------------------ggtaaactgactgtggaagggggagaagaacc
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30891647 313 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I
e cebCap1.NW_016107322v1         7672752 186 +  14377064 I

a score=8073.000000
s hg38.chr14_GL000009v2_random    197220 2 +    201709 AT
s panTro5.chr9                  41887019 2 + 116767853 AT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852721 2 + 205426864 at
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12429 2 +  12760026 at
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125794 2 -  86207423 at
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    180426 2 - 192460366 ct
i macFas5.chr2                 C 0 C 0
s colAng1.NW_012123820v1           85566 2 -  10971483 at
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941697 2 -  13128814 at
i saiBol1.JH378168             C 0 I 137
s aotNan1.NW_018487195v1         4140491 2 -   9889416 at
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20771884 2 +  38779656 at
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22718705 2 -  98207768 AT
i mm10.chr16                   C 0 I 50
s canFam3.chr31                 28807874 2 -  39895921 ct
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700425 2 +   6883506 ct
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30891647 313 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e rheMac8.chr2                 204281204 149 - 204787373 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I
e cebCap1.NW_016107322v1         7672752 186 +  14377064 I
e manLeu1.NW_012099043v1          197299 149 -    785044 I
e chlSab2.chr22                    75733 149 - 101219884 I
e cerAty1.NW_012001605v1          185117 149 -   6739814 I
e macNem1.NW_012010856v1          199895 149 -  11645122 I

a score=14551.000000
s hg38.chr14_GL000009v2_random    197222 3 +    201709 GAT
s panTro5.chr9                  41887021 3 + 116767853 GAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852723 3 + 205426864 aat
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12431 3 +  12760026 aat
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125796 3 -  86207423 gat
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    180428 3 - 192460366 ggt
i macFas5.chr2                 C 0 C 0
s colAng1.NW_012123820v1           85568 3 -  10971483 ggt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941836 3 -  13128814 gat
i saiBol1.JH378168             I 137 I 2
s aotNan1.NW_018487195v1         4140493 3 -   9889416 gat
i aotNan1.NW_018487195v1       C 0 I 146
s otoGar3.GL873528              20771886 3 +  38779656 gat
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22718757 3 -  98207768 AAT
i mm10.chr16                   I 50 I 15
s canFam3.chr31                 28807876 3 -  39895921 gat
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700427 3 +   6883506 aat
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30891647 313 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e rheMac8.chr2                 204281204 149 - 204787373 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I
e cebCap1.NW_016107322v1         7672752 186 +  14377064 I
e manLeu1.NW_012099043v1          197299 149 -    785044 I
e chlSab2.chr22                    75733 149 - 101219884 I
e cerAty1.NW_012001605v1          185117 149 -   6739814 I
e macNem1.NW_012010856v1          199895 149 -  11645122 I

a score=10010.000000
s hg38.chr14_GL000009v2_random    197225 2 +    201709 TT
s panTro5.chr9                  41887024 2 + 116767853 TT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852726 2 + 205426864 tt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12434 2 +  12760026 tt
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125799 2 -  86207423 tt
i nomLeu3.chr21                C 0 I 136
s macFas5.chr2                    180431 2 - 192460366 tt
i macFas5.chr2                 C 0 I 136
s colAng1.NW_012123820v1           85571 2 -  10971483 tt
i colAng1.NW_012123820v1       C 0 C 0
s otoGar3.GL873528              20771889 2 +  38779656 tt
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22718775 2 -  98207768 TT
i mm10.chr16                   I 15 C 0
s canFam3.chr31                 28807879 2 -  39895921 tt
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700430 2 +   6883506 tt
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30891647 313 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e rheMac8.chr2                 204281204 149 - 204787373 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I
e aotNan1.NW_018487195v1         4140496 146 -   9889416 I
e cebCap1.NW_016107322v1         7672752 186 +  14377064 I
e saiBol1.JH378168              10941839 2 -  13128814 I
e manLeu1.NW_012099043v1          197299 149 -    785044 I
e chlSab2.chr22                    75733 149 - 101219884 I
e cerAty1.NW_012001605v1          185117 149 -   6739814 I
e macNem1.NW_012010856v1          199895 149 -  11645122 I

a score=5159.000000
s hg38.chr14_GL000009v2_random    197227 1 +    201709 G
s panTro5.chr9                  41887026 1 + 116767853 G
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852728 1 + 205426864 g
i panPan2.chr3                 C 0 I 141
s gorGor5.CYUI01015020v1           12436 1 +  12760026 g
i gorGor5.CYUI01015020v1       C 0 I 140
s nomLeu3.chr21                 42125937 1 -  86207423 g
i nomLeu3.chr21                I 136 C 0
s macFas5.chr2                    180569 1 - 192460366 g
i macFas5.chr2                 I 136 C 0
s colAng1.NW_012123820v1           85573 1 -  10971483 g
i colAng1.NW_012123820v1       C 0 I 141
s saiBol1.JH378168              10941841 1 -  13128814 g
i saiBol1.JH378168             I 2 C 0
s otoGar3.GL873528              20771891 1 +  38779656 g
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22718777 1 -  98207768 G
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28807881 1 -  39895921 a
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700432 1 +   6883506 g
i dasNov3.JH568778             C 0 I 156
e micMur3.chr31                 30891647 313 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e rheMac8.chr2                 204281204 149 - 204787373 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I
e aotNan1.NW_018487195v1         4140496 146 -   9889416 I
e cebCap1.NW_016107322v1         7672752 186 +  14377064 I
e manLeu1.NW_012099043v1          197299 149 -    785044 I
e chlSab2.chr22                    75733 149 - 101219884 I
e cerAty1.NW_012001605v1          185117 149 -   6739814 I
e macNem1.NW_012010856v1          199895 149 -  11645122 I

a score=289.000000
s hg38.chr14_GL000009v2_random    197228 1 +    201709 C
s panTro5.chr9                  41887027 1 + 116767853 C
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42125938 1 -  86207423 c
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    180570 1 - 192460366 c
i macFas5.chr2                 C 0 C 0
s saiBol1.JH378168              10941842 1 -  13128814 a
i saiBol1.JH378168             C 0 C 0
s otoGar3.GL873528              20771892 1 +  38779656 t
i otoGar3.GL873528             C 0 I 66
s mm10.chr16                    22718778 1 -  98207768 T
i mm10.chr16                   C 0 I 27
s canFam3.chr31                 28807882 1 -  39895921 c
i canFam3.chr31                C 0 I 131
s dasNov3.JH568778               6700589 1 +   6883506 c
i dasNov3.JH568778             I 156 C 0
e micMur3.chr31                 30891647 313 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e rheMac8.chr2                 204281204 149 - 204787373 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I
e aotNan1.NW_018487195v1         4140496 146 -   9889416 I
e colAng1.NW_012123820v1           85574 141 -  10971483 I
e cebCap1.NW_016107322v1         7672752 186 +  14377064 I
e manLeu1.NW_012099043v1          197299 149 -    785044 I
e chlSab2.chr22                    75733 149 - 101219884 I
e cerAty1.NW_012001605v1          185117 149 -   6739814 I
e macNem1.NW_012010856v1          199895 149 -  11645122 I
e panPan2.chr3                  77852729 141 + 205426864 I
e gorGor5.CYUI01015020v1           12437 140 +  12760026 I

a score=5952.000000
s hg38.chr14_GL000009v2_random    197229 4 +    201709 CAAT
s panTro5.chr9                  41887028 4 + 116767853 CAAT
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42125939 4 -  86207423 cagc
i nomLeu3.chr21                C 0 C 0
s macFas5.chr2                    180571 4 - 192460366 cggc
i macFas5.chr2                 C 0 C 0
s saiBol1.JH378168              10941843 4 -  13128814 cagc
i saiBol1.JH378168             C 0 I 1
s mm10.chr16                    22718806 4 -  98207768 caat
i mm10.chr16                   I 27 I 27
s canFam3.chr31                 28808014 4 -  39895921 cagt
i canFam3.chr31                I 131 C 0
s dasNov3.JH568778               6700590 4 +   6883506 cagc
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30891647 313 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e rheMac8.chr2                 204281204 149 - 204787373 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I
e aotNan1.NW_018487195v1         4140496 146 -   9889416 I
e otoGar3.GL873528              20771893 66 +  38779656 I
e colAng1.NW_012123820v1           85574 141 -  10971483 I
e cebCap1.NW_016107322v1         7672752 186 +  14377064 I
e manLeu1.NW_012099043v1          197299 149 -    785044 I
e chlSab2.chr22                    75733 149 - 101219884 I
e cerAty1.NW_012001605v1          185117 149 -   6739814 I
e macNem1.NW_012010856v1          199895 149 -  11645122 I
e panPan2.chr3                  77852729 141 + 205426864 I
e gorGor5.CYUI01015020v1           12437 140 +  12760026 I

a score=9555.000000
s hg38.chr14_GL000009v2_random    197233 1 +    201709 T
s panTro5.chr9                  41887032 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852870 1 + 205426864 t
i panPan2.chr3                 I 141 C 0
s gorGor5.CYUI01015020v1           12577 1 +  12760026 t
i gorGor5.CYUI01015020v1       I 140 C 0
s nomLeu3.chr21                 42125943 1 -  86207423 t
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281353 1 - 204787373 t
i rheMac8.chr2                 I 149 C 0
s macFas5.chr2                    180575 1 - 192460366 t
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200044 1 -  11645122 t
i macNem1.NW_012010856v1       I 149 C 0
s cerAty1.NW_012001605v1          185266 1 -   6739814 t
i cerAty1.NW_012001605v1       I 149 C 0
s chlSab2.chr22                    75882 1 - 101219884 t
i chlSab2.chr22                I 149 C 0
s manLeu1.NW_012099043v1          197448 1 -    785044 t
i manLeu1.NW_012099043v1       I 149 C 0
s colAng1.NW_012123820v1           85715 1 -  10971483 t
i colAng1.NW_012123820v1       I 141 C 0
s mm10.chr16                    22718837 1 -  98207768 t
i mm10.chr16                   I 27 C 0
s canFam3.chr31                 28808018 1 -  39895921 t
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700594 1 +   6883506 t
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30891647 313 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I
e aotNan1.NW_018487195v1         4140496 146 -   9889416 I
e otoGar3.GL873528              20771893 66 +  38779656 I
e cebCap1.NW_016107322v1         7672752 186 +  14377064 I
e saiBol1.JH378168              10941847 1 -  13128814 I

a score=50250.000000
s hg38.chr14_GL000009v2_random    197234 4 +    201709 TCAG
s panTro5.chr9                  41887033 4 + 116767853 TCAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852871 4 + 205426864 tcag
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12578 4 +  12760026 tcgg
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125944 4 -  86207423 tcag
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281354 4 - 204787373 tcag
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180576 4 - 192460366 tcag
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200045 4 -  11645122 tcag
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185267 4 -   6739814 tcag
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75883 4 - 101219884 tcag
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197449 4 -    785044 tcag
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85716 4 -  10971483 tcag
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941848 4 -  13128814 tcag
i saiBol1.JH378168             I 1 C 0
s cebCap1.NW_016107322v1         7672938 4 +  14377064 tcag
i cebCap1.NW_016107322v1       I 186 C 0
s aotNan1.NW_018487195v1         4140642 4 -   9889416 TCAG
i aotNan1.NW_018487195v1       I 146 C 0
s mm10.chr16                    22718838 4 -  98207768 tcaa
i mm10.chr16                   C 0 I 11
s canFam3.chr31                 28808019 4 -  39895921 ccag
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700595 4 +   6883506 ccag
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30891647 313 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I
e otoGar3.GL873528              20771893 66 +  38779656 I

a score=872943.000000
s hg38.chr14_GL000009v2_random    197238 78 +    201709 CACAAAACTGAAAATGGTTATTAATCTTTACTAGCTA-CAGATATCTTTTAACATATATTGAAATCTATGACCCTTAAA
s panTro5.chr9                  41887037 78 + 116767853 CACAAAACTTAAAATGGTTATTAATCTTTACTAGCTC-CAGATATCTTTTAACATATATTGAAATCTATGACCCTTAAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852875 78 + 205426864 cacaaaactgAAAATGATTATTAATCTTTACTGGCTC-CAGATATTTTTTAACATATATTGAAATCTATGACCCTTAAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12582 78 +  12760026 cacaaaactgAAAATCATTATTAATCTTTACTGGCTC-CAGATATCTTTTAACATATATTGAAATCTATGACCCTTAAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42125948 78 -  86207423 cacaaaactgAAAATGATTATTAATCTTTACTAGCTC-CAGATATCTTTTAACATATATTGAAATCTATGACCCTTAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281358 78 - 204787373 cacaaaactgAAAATGGTTTTTACTCTTCACTAGCTC-CAGATATCCTTTAACATATGTTGAAACCTACGACCCTTAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180580 78 - 192460366 cacaaaactgAAAATGGTTTTTACTCTTCACTAGCTC-CAGATATCCTTTAACATATGTTGAAACCTACGACCCTTAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200049 78 -  11645122 cacaaaactgAAAATGGTTTTTACTCTTCACTAGCTC-CAGATATCCTTTAACATATGTTGAAACCTACTACCCTTAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185271 78 -   6739814 cacaaaactgAAAATGGTTTTTACTCTTTACTAGCTC-CAGATATCCTTTAACATATATTGAAACCTATGACCCTTAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75887 78 - 101219884 cacaaaactgAAAATGGTTATTACTCTTTGCTAGCTC-CAGATATCCTTTAACATATGTTGAAAGCTATGACCCTTAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197453 78 -    785044 cacaaaactgAAAATGGTTTTTACTCTTTACTAGCTC-CAGATATCCTTTAACATATATTGAAACCTATGACCCTTAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85720 78 -  10971483 cacaaaactgAAAATGGTTATTACTCTTTACTAGCTC-CAGATATCCTTTAACATATATTGAAACCTATGACCCTTAAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941852 77 -  13128814 cacaaaactg-AAATGGTTATTAATCTTTACTAGCTC-CAGACATCTTTGAACATATAGTGAAATCTGTGACTCTCAAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7672942 77 +  14377064 cacaaaactg-AAATGGTTATTAATCTTTATTAGCTC-CAGACATCTTTGAACATATAGTGAAATCTATAACTCTTAAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140646 77 -   9889416 CACAAAACTG-AAATGGTTATTAATCTTTACTAGCTC-CAGACATCTTTGAACATATATTGAAATCTGTGACTCTTAAT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30891960 78 -  47401472 cacaaaactgAAAGTGGTTATTAATCTTTACCAGGTC-CAGATATCTTTGAACATATGTTGAAATACATGACCCTTTAA
i micMur3.chr31                I 313 C 0
s mm10.chr16                    22718853 69 -  98207768 CACAAAACTGAAAATAATTATTACTCTTTA-GAGGTC-TAAAAATCTTTGAATATATATTGAAAT--------CTTAAA
i mm10.chr16                   I 11 C 0
s canFam3.chr31                 28808023 79 -  39895921 caAAAAATTGAAAATGTTTATTAATTTTCACTAGGTCACGGATATCTTTGAACATATACAAATCTCAATGAACCTTAAA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700599 76 +   6883506 cccaacactTAAAA---TTACTAATCATTACCAGGTCATAGATATCTTTGAACATATATTAAAAGGTACAATCCTTTGA
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I
e otoGar3.GL873528              20771893 66 +  38779656 I

a score=799436.000000
s hg38.chr14_GL000009v2_random    197316  72 +    201709 ----------AAGAAAACATATATACAGATTTTGAC-AAAACTTTGC------AGTTCCACTCATGGATCCTTGTA-------------------TAAGAAT-CC---------------------CTTT
s panTro5.chr9                  41887115  72 + 116767853 ----------AAGAAAACATATATATAGATTTTGAC-AAAACTTTGC------AGTTCCACTCATGGATCCCTGTG-------------------TAAGAAT-CA---------------------CTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77852953  72 + 205426864 ----------AAGAAAACATATATACAGATTTTGAC-AAAACTTTGC------AGTTCCACACATGGATCCCTGTA-------------------TAAGAAT-CC---------------------CCTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12660  72 +  12760026 ----------AAGAAAACATATATACAGATTTTGAC-AAAACTTTGC------AGTTCCACTCATGGATCCCTGTA-------------------TAAGAAT-CC---------------------CCTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126026  72 -  86207423 ----------AAGAAAACAGATATACAGATTTTGAC-AAAACTTTGC------AGTTCCACTCATGGATCCCTGTA-------------------TAAGAAT-CC---------------------CCTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281436  72 - 204787373 ----------AAGAAAACGTATATACAGATTTTGAC-CAAATTTTGC------CATTCCGCTCATGGATCCCTGTA-------------------TAAGAAT-CC---------------------CCTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180658  72 - 192460366 ----------AAGAAAACGTATATACAGATTTTGAC-CAAATTTTGC------CATTCCGCTCATGGATCCCTGTA-------------------TAAGAAT-CC---------------------CCTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200127  73 -  11645122 ----------AAGAAAACGTATATACAGATTTTGAC-CAAATTTTGC------CATTCCGCTCATGGATCCCTGTA-------------------TAAGAATCCC---------------------CCTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185349  72 -   6739814 ----------AAGAAAACATATATACAGATTTTGAC-CAAATTTTGC------CATTCCGCTCATGAATCCCTGTA-------------------TAAGAAT-CC---------------------CCTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    75965  72 - 101219884 ----------AAGAAAACATATATACAGATTTTGAC-CAAATTTTGC------CATTCCGCTCATGGATCCCTGTA-------------------TAAGAAT-CC---------------------CCTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197531  72 -    785044 ----------AAGAAAACATATATACAGATTTTGAC-CAAATTTTGC------CATTCCGCTCATGGATCCCTGTA-------------------TAAGAAT-CC---------------------CCTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85798  72 -  10971483 ----------AAGAAAACATATATACAGACTTTGAC-AAAATTTTGC------AGTTCCGCTCATGGATCCCTGTA-------------------TAAGAAT-CC---------------------CCTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10941929  73 -  13128814 ----------GAGAGAATATATATACAGATTTTGACAAAAACTTTGC------AGTTCCACTCATGGATCCCTGTA-------------------TAAGAAT-CC---------------------CCTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673019  72 +  14377064 ----------GAGAGAACGTATGTACAGATTTTGAC-AAAACTTTGC------AGTTCCACTCATGGATCCCTGTA-------------------TAAGAAT-CC---------------------CCTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140723  72 -   9889416 ----------GAGATAATGTATGTACAGATTTTGAC-AAAACTTTGC------AGTTCCTCTCATGGATCCTTGTA-------------------TAAGAAT-CC---------------------CCTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30892038  71 -  47401472 ----------AAAACAATTTATATACATA-TTTGAC-AAAATGTTGC------AGTTCTACTCATGGATCCCTCTG-------------------TAAGAAT-CC---------------------CCTT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20771959  70 +  38779656 ----------CAACCAACTTAGA-AAATT-TTTGAC-AAAATATTGC------AGTTCCACTCATAAGTCCCTCTG-------------------CAAAACT-CC---------------------CCTT
i otoGar3.GL873528             I 66 C 0
s mm10.chr16                    22718922 110 -  98207768 ------------AAAATtatatatatatatatatac-acatatatgt------atatgtatgtatgtatgtatgtatgtatatataattttatTTTAAAAAT-TCTCCAAACCCACTAACAGATTTCCTT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28808102  70 -  39895921 ----------TAAAAAGCTTATATACAGATTTTGAC-AAGGC--TGC------CATTCTACCCATGGATCCCTGCA-------------------TAAGAAT-TC---------------------CCTT
i canFam3.chr31                C 0 I 937
s dasNov3.JH568778               6700675  88 +   6883506 AAAATAATTCAATAAAGCATTTATACAGATTTTGAC-AAAACTTTGCCAACTTAGTTTAACCCATGCCTCCCTGTA-------------------TAACAAT-CT---------------------TTTT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I

a score=473891.000000
s hg38.chr14_GL000009v2_random    197388 41 +    201709 TATATGTGTGTTTGCAATTTAAAGAGTTCAGAC--------------------------------------TTTATGAT
s panTro5.chr9                  41887187 41 + 116767853 TCTATGTGTGCTTGCAATTTAAAGAGTTCAGAC--------------------------------------TTTATATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853025 41 + 205426864 TCTATGTGTGTTTGTAATTTAAAGAGTTCAGAC--------------------------------------TTTATGAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12732 41 +  12760026 TCTATGTGTGTTTGTAATTTAAAGAGTTCAGAC--------------------------------------TTTATGAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126098 41 -  86207423 TCTATGTGTGTTTACAATTTGAAGAGTTCAGAC--------------------------------------TTTATGAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281508 41 - 204787373 TCTATGTGTGCTTGTAATTTAAAGGGTTCAGAG--------------------------------------TTTACGAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180730 41 - 192460366 TCTATGTGTGCTTGTAATTTAAAGGGTTCAGAG--------------------------------------TTTACGAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200200 41 -  11645122 TCTATGTGTGCTTGTAATTTAAAGGGTTCAGAG--------------------------------------TTTACGAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185421 41 -   6739814 TCTATGTGTGCTTGTAATTTAAAGAGTTCAGAG--------------------------------------TTTACAAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76037 41 - 101219884 TCTATGTGTGCTTGTAATTTAAAGAGTTCAGAG--------------------------------------TTTACGAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197603 41 -    785044 TCTATGTGTGCTTGTAATTTACAGAGTTCAGAG--------------------------------------TTTACAAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85870 41 -  10971483 TCTATGTGTGCTTGTAATTTAAAGAGTTCAGAG--------------------------------------TTTATGAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942002 41 -  13128814 TCTATGTGTGTTTGTAATTTAAAGAGTTCAGAC--------------------------------------TTTACGTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673091 41 +  14377064 TCTATGTGTGTTTGTAATTTAAAGAGTTCAGAC--------------------------------------TTTATGTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140795 41 -   9889416 TCTATGTGTGTTTGTAATTTAAAGAGTTCAGAC--------------------------------------TTTACGTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30892109 41 -  47401472 CCTATGTGTGCTTGTAACTgaaagagttgagac--------------------------------------tttacgat
i micMur3.chr31                C 0 I 1246
s otoGar3.GL873528              20772029 41 +  38779656 CCTATGTGTGCTTGTAATTTGTAGAGTTCAGAC--------------------------------------TTGATGAG
i otoGar3.GL873528             C 0 I 13
s mm10.chr16                    22719032 79 -  98207768 CATATGTTTAATTGTAATTGCAAAGGTTCATACTAGGATTCAACTTGTCATTTAATTTCAACACAGTGACTTTTATAAT
i mm10.chr16                   C 0 I 18
s canFam3.chr31                 28809109 41 -  39895921 tacatgtgtccctttgaattagtgcttttgtat--------------------------------------tctttggT
i canFam3.chr31                I 937 C 0
s dasNov3.JH568778               6700763 41 +   6883506 CCTGTGTGAACTAGTAATTTAGAGGATTCAGGC--------------------------------------TTTATGAT
i dasNov3.JH568778             C 0 C 0
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I

a score=418138.000000
s hg38.chr14_GL000009v2_random    197429  46 +    201709 TCACAGGTGACA----------------------------------ATTAATGATTTAAA--------------ATCATAACTTAGGCTTT------------TAT
s panTro5.chr9                  41887228  46 + 116767853 TCACAGGTGACA----------------------------------ACTAATGATTTAAT--------------CTCAACACTTAGGCTTT------------TAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853066  46 + 205426864 TCACAGGTGACA----------------------------------ACTAATGATTTAAC--------------CTCAACACTTGGGCTTT------------TAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12773  46 +  12760026 TCACAGGTGACA----------------------------------ACTAATGATTTAAC--------------CTCAACACTTGGGCTTT------------TAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126139  46 -  86207423 TCACAGGTGATA----------------------------------ACTAATGATTTAAT--------------CTCAACACTTAGGGTTT------------TAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281549  46 - 204787373 TCACAGGTGACA----------------------------------ACTAATGCTTTAAT--------------CTCAACACTTGGGCTTT------------TAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180771  46 - 192460366 TCACAGGTGACA----------------------------------ACTAATGCTTTAAT--------------CTCAACACTTGGGCTTT------------TAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200241  46 -  11645122 TCACAGGTGACA----------------------------------ACTAATGCTTTAAT--------------CTCAACACTTGGGCTTT------------TAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185462  46 -   6739814 TCACAGGTGACA----------------------------------ACTAATGGTTTAAT--------------CTCAACACTTGGGCTTT------------TAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76078  46 - 101219884 TCACAGGTGACA----------------------------------ACTAATGGTTTAAT--------------CTCAACACTTGGGCTTT------------TAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197644  46 -    785044 TCACAGGTGACA----------------------------------ACTAATGGTTTAAT--------------CTCAACACTTGGGCTTT------------TAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85911  46 -  10971483 TCACAGGTGACA----------------------------------ACTAATGGTTTAAT--------------CTCAACACTTGGGCTTT------------TAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942043  46 -  13128814 TCACAGACGACT----------------------------------ATGAATCATTTAAT--------------CTCAACACTTTGGCTTT------------TAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673132  46 +  14377064 TCACAGATGACT----------------------------------ATGAATCATTTAAT--------------CTCAACACTTTGGCTTT------------TAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140836  46 -   9889416 TCACAGATGACT----------------------------------ATCAATCATTTAAT--------------CTCAACACTTTGGTTTT------------TAT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772083  43 +  38779656 TCATGAATGACA----------------------------------AATTATAATTTAAT--------------CTCAACAATTTGGCTTT---------------
i otoGar3.GL873528             I 13 C 0
s mm10.chr16                    22719129 106 -  98207768 TCACTGAAggcataggagcatagcacagttgacagagcgcttatctaacaaggcttgagttctatcagtagacacacaatatccaggtgttactgcaagatgttat
i mm10.chr16                   I 18 I 8
s canFam3.chr31                 28809150  39 -  39895921 -------CCATA----------------------------------ATTTACCTTTCAAT--------------CCCAACACTTTCACTTT------------CAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700804  46 +   6883506 ACACAAATAATA----------------------------------ATTTATCATTTAAT--------------ACCAACATTTTGACTTT------------TAG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30892150 1246 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I
e eulFla1.LGHW01000695v1           98016 526 +   1229009 I

a score=280674.000000
s hg38.chr14_GL000009v2_random    197475  28 +    201709 AATTTGGGAGTCAGG----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTGCTG
s panTro5.chr9                  41887274  28 + 116767853 AATTTGGGAGTCAGG----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTGCTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853112  28 + 205426864 AATTTGGGAGTCCGG----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTGCTG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12819  28 +  12760026 AATTTGGGAGTCAGG----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTGCTG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126185  28 -  86207423 AATTTGGGAGTCAGG----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTGCTG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281595  28 - 204787373 AATTTGTGAGTCAGG----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTGCTG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180817  28 - 192460366 AATTTGGGAGTCAGG----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTGCTG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200287  28 -  11645122 AATTTGGGAGTCAGG----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTGCTG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185508  28 -   6739814 AATTTGGGAGTCAGG----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTGCTG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76124  28 - 101219884 AATTTGGGAGTCAGG----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTGCAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197690  28 -    785044 AATTTGGGAGTCAGG----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTGCTG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85957  28 -  10971483 AATTTGGGAGTCAGG----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTGCTG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942089  28 -  13128814 AATTTGGGAGACAGG----------------------------------------------------------------------------TGTTTGA-------------------------------------------CTGCTG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673178  28 +  14377064 AGTTTGGGAGACAGG----------------------------------------------------------------------------TGTTTGA-------------------------------------------CTGCTG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140882  28 -   9889416 AATTTGGGAGACAGG----------------------------------------------------------------------------TGTTTCA-------------------------------------------CTGCTG
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           98542  28 +   1229009 AATTTGGGAGACAGA----------------------------------------------------------------------------TGTTTAA-------------------------------------------CTACAG
i eulFla1.LGHW01000695v1       I 526 C 0
s otoGar3.GL873528              20772126  27 +  38779656 AAATAAAAAGTGAGG----------------------------------------------------------------------------TGTTT-T-------------------------------------------CTACAG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719243 147 -  98207768 cagttagaaggcaggaacagcagagttcaaagttcaagctcatccttggttatacagtaagtttgaggaaagcttggggtacaagaaactctgtttcaaacaacaaaaCTAAAACTTTCTAAACCCCAAAGCCTTTACAATCAGCTG
i mm10.chr16                   I 8 I 7
s canFam3.chr31                 28809189  28 -  39895921 AATTTGGGAGCCAGA----------------------------------------------------------------------------TATTAAA-------------------------------------------CTGCAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700850  28 +   6883506 TGTTTAGGAACCAGT----------------------------------------------------------------------------TACTTAA-------------------------------------------CTGCAG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30892150 1246 -  47401472 I
e nasLar1.chr2                    159669 1270 + 181502896 I

a score=53280.000000
s hg38.chr14_GL000009v2_random    197503 5 +    201709 TAGTA
s panTro5.chr9                  41887302 5 + 116767853 TAGTA
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42126213 5 -  86207423 TAGTA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281623 5 - 204787373 TAGTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180845 5 - 192460366 TAGTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200315 5 -  11645122 TAGTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185536 5 -   6739814 TAGTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76152 5 - 101219884 TAGTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197718 5 -    785044 TAGTA
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    160939 5 + 181502896 TAGTA
i nasLar1.chr2                 I 1270 I 109
s colAng1.NW_012123820v1           85985 5 -  10971483 TAGTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942117 5 -  13128814 CAGTA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673206 5 +  14377064 CAGTA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140910 5 -   9889416 CAGTA
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           98570 5 +   1229009 CAATA
i eulFla1.LGHW01000695v1       C 0 C 0
s otoGar3.GL873528              20772153 5 +  38779656 TATTA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719397 5 -  98207768 TGGCA
i mm10.chr16                   I 7 C 0
s canFam3.chr31                 28809217 5 -  39895921 CATTA
i canFam3.chr31                C 0 I 1
s dasNov3.JH568778               6700878 5 +   6883506 CATTA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30892150 1246 -  47401472 I
e panPan2.chr3                  77853140 0 + 205426864 C
e gorGor5.CYUI01015020v1           12847 0 +  12760026 C

a score=37628.000000
s hg38.chr14_GL000009v2_random    197508 4 +    201709 GTAA
s panTro5.chr9                  41887307 4 + 116767853 GTAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853140 4 + 205426864 GTAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12847 4 +  12760026 GTAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126218 4 -  86207423 GTAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281628 4 - 204787373 GTAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180850 4 - 192460366 GTAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200320 4 -  11645122 GTAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185541 4 -   6739814 GTAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76157 4 - 101219884 GTAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197723 4 -    785044 GTAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85990 4 -  10971483 GTAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942122 4 -  13128814 GTAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673211 4 +  14377064 GTAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140915 4 -   9889416 GTAA
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1           98575 1 +   1229009 ---A
i eulFla1.LGHW01000695v1       C 0 I 1147
s otoGar3.GL873528              20772158 1 +  38779656 ---A
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719402 4 -  98207768 TTAA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28809223 3 -  39895921 ATA-
i canFam3.chr31                I 1 C 0
s dasNov3.JH568778               6700883 4 +   6883506 ACAA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30892150 1246 -  47401472 I
e nasLar1.chr2                    160944 109 + 181502896 I

a score=1051818.000000
s hg38.chr14_GL000009v2_random    197512 105 +    201709 CTGCTTCTTCTCAGAGAAACTTAGGAGCTAAGACCA----GGGAAATGTCCCTTGGTGTGC---AA----CACACCT--CTTCTTTCTG----AACATATCGTATAAGAAGCTAACTTTGTC--
s panTro5.chr9                  41887311 105 + 116767853 CTGCTTCTTCTCAGAGAAACTTAGTAGCTAAGACCA----GGGAAATGTCCCTTGGTGTGC---AA----CACACCT--CTTCTTTCTG----AACGTACCGTATAAGAAGCTAACTTTGTC--
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853144 105 + 205426864 CTGCTTCTTCTCAGAGAAACTTAGGAGCTAAGACCA----GGGAAATGTCCCTTCGTCTGC---AA----CACACCT--CTTCTTTCTG----AACATATTGTATAAGAAGCTAACTTTGTC--
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12851 105 +  12760026 CTGCTTCTTCTCAGAGAAACTTAGGAGCTAAGACCA----GGGAAATGTCCCTTTGTCTGC---AA----CATACCT--CTTCTTTCTG----GACATATTGTATAAGAAGCTAACTTTGTC--
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126222 105 -  86207423 CTGCTTCTTCTCAGAGAAACTTAGAAGCTAAGACCA----GGGCAATATCCCTTGGTCTGC---AA----CACACCT--CTTCTTTCTG----AACATATCGTATAAGAAGCTAACTTTGTC--
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281632 105 - 204787373 CTGCTTCTTCTCAGAGAAACTTAGGAGCTAAGACCA----GGGAAATGTCCGTTGGTCTGC---AA----CACACCT--CTTCTTTCTG----AACATGTTGTATAAGAAACTAACTTTGTC--
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180854 105 - 192460366 CTGCTTCTTCTCAGAGAAACTTAGGAGCTAAGACCA----GGGAAATGTCCGTTGGTCTGC---AA----CACACCT--CTTCTTTCTG----AACATGTTGTATAAGAAACTAACTTTGTC--
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200324 105 -  11645122 CTGCTTCTTCTCAGAGAAACTTAGGAGCTAAGACCA----GGGAAATGTCCGTTGGTCTGC---AA----CACGCCT--CTTCTTTCTG----AACATGTTGTATAAGAAACTAACTTTGTC--
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185545 105 -   6739814 CTGCTTCTTCTCAGAGAAACTTAGGAGCTAAGACCA----GGGAAATGTCCCTTGGTCTGC---AA----CATACCT--CTTCTTTCTG----AACATGTTGTATAAGAAACTAACTTTGTC--
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76161 105 - 101219884 CTGCTTCTTCTCAGACAAACTTAGGAGCTAAGACCA----GGGAAATGTCCCTTGGTCTGC---AA----CACACCT--CTTCTTTCTG----AACATGTTGTATAAGAAACTAACTTTGTC--
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197727 105 -    785044 CTGCTTCTTCTCAGAGAAACTTAGGAGCTAAGACCA----GGGAAATGTCCCTTGGTCTGC---AA----CACACCT--CTTCTTTCTG----AACATGTTGTATAAGAAACTAACTTTGTC--
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           85994 105 -  10971483 CTGCTTCTTCTCAGAGAAACTTAGGAGCTAAGACCA----GGGAAATGTCCCTTGGTCTGC---AA----CACACCT--CTTCTTTCTG----AACATGTTGTATAAGAAACTAACTTTGTC--
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942126 104 -  13128814 CTGCTTCTTCTCAGAGAAACTTAGGAACTAAGACCA----GGGAAATGTCCCCTGCTCTGC---AA----CACGCTT--CTTCCTTCTG----AACACACTGTATAA-AAGCAAACTTTATT--
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673215 105 +  14377064 CCGCTTCTTCTCAGAGAAACTTAGGAACTAAGACCA----GGGAAATGTCCCTTGCTCTGC---AA----CACACTT--CTTCCTTCTG----AACACACTGTATAAGAAGCAAACTTCATC--
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4140919 107 -   9889416 CTGCTTCCTCTCAGAGAAACTTAGGAACTAAGACTA----GGGAAATGTCCCTTGCTCTGC---AA----CACACTTGGAATCCTTCTG----AACACACTATATAAGAAGTAAACTTTCTC--
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772159 103 +  38779656 ATGCTGCTTCTCAGAGAAACTCAGGAACTC--TTTA----GGGAAATATCCCTTAGTTGCC---AA----AACTACT--TTTCTTCCTA----AACACGCCATGTGAAAAGCCACCTTTGTT--
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719406 101 -  98207768 CCACAGCATCTCAGAG-GGCTTATGAG---GGACCACCCTAGGAACTCTGCCTTGATGGTC---AG----TGTGCCT--CTTCCTCCCA----AAA----CGCAGAAGGAGTGAGCTATTTC--
i mm10.chr16                   C 0 I 4
s canFam3.chr31                 28809226 107 -  39895921 CTGTATTCCCTCAGCAAAACTTAAGAATT--GTTGG----GGAAAATGTGCCTTGGTCTGC---AAATAGCATGCTT--CTCTTCCTGA----AGCACACCATAATAAAAGCTACTTTTGTT--
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700887 112 +   6883506 CTGTACCTTCTTGGGAAAATTCAGAAACT--GTCTA----GGAAAAGGCACCCAGGCTTCTATAAA----CATGCTT--CTCTCTTCTGCTGAGCCACACCATGTAAAAAGCTAATATTCCATT
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30892150 1246 -  47401472 I
e nasLar1.chr2                    160944 109 + 181502896 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I

a score=13923.000000
s hg38.chr14_GL000009v2_random    197617 1 +    201709 T
s panTro5.chr9                  41887416 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42126327 1 -  86207423 T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281737 1 - 204787373 T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180959 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200429 1 -  11645122 T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185650 1 -   6739814 T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76266 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197832 1 -    785044 T
i manLeu1.NW_012099043v1       C 0 C 0
s nasLar1.chr2                    161053 1 + 181502896 T
i nasLar1.chr2                 I 109 N 0
s colAng1.NW_012123820v1           86099 1 -  10971483 T
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942230 1 -  13128814 T
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673320 1 +  14377064 T
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141026 1 -   9889416 T
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772262 1 +  38779656 T
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719511 1 -  98207768 T
i mm10.chr16                   I 4 C 0
s canFam3.chr31                 28809333 1 -  39895921 T
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6700999 1 +   6883506 T
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30892150 1246 -  47401472 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e panPan2.chr3                  77853249 0 + 205426864 C
e gorGor5.CYUI01015020v1           12956 0 +  12760026 C

a score=235341.000000
s hg38.chr14_GL000009v2_random    197618 25 +    201709 CAAAGTTTATATG--ACTTTTGCATTT
s panTro5.chr9                  41887417 25 + 116767853 CAAAGTTTATATG--ACATTTGCATTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853249 25 + 205426864 CAAAGTTTATATG--ACTTTTGCATTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12956 25 +  12760026 CAAAGTTTATATG--ACTTCTGCATTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126328 25 -  86207423 CAAAGTTCATATG--ACTTTTGCATTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281738 25 - 204787373 CAAAGTTTATATG--ACTTTTGCATTA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180960 25 - 192460366 CAAAGTTTATATG--ACTTTTGCATTA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200430 25 -  11645122 CAAAGTTTATATG--ACTTTTGCATTA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185651 25 -   6739814 CAAAGTTTATATG--ACTTTTGCATTA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76267 25 - 101219884 CAAAGTTTATATG--ACTTTTGCATTA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197833 25 -    785044 CAAAGTTTATATG--ACTTTTGCATTA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86100 25 -  10971483 CAAAGTTTATATG--ACTTTTGCATTA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942231 25 -  13128814 CAAGGTTTATATG--ATTTTTGCATTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673321 25 +  14377064 CAAGGTTTATATA--ACTTTTGCATTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141027 25 -   9889416 CAAGGTTTATATG--ACTTTTGCATTT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772263 27 +  38779656 CAGGTATTATCTGTCATTTTTGAACCT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719512 26 -  98207768 CAAGGGTTATCTGT-GACTTTATATTT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28809334 14 -  39895921 CAG--------TG--atttt---attt
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6701000 27 +   6883506 TATGGCTTATATGTGATTCTTCCACTT
i dasNov3.JH568778             C 0 I 2444
e micMur3.chr31                 30892150 1246 -  47401472 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I

a score=187401.000000
s hg38.chr14_GL000009v2_random    197643 21 +    201709 GCAGTTA--CTAGCTATTTTCTT
s panTro5.chr9                  41887442 21 + 116767853 GCAGTTA--CTAGCTATTTTCTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853274 21 + 205426864 TCAATTA--CAAGCTCTTTTCTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           12981 21 +  12760026 TCAATTA--CAAGCTATTTTCTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126353 21 -  86207423 TCAATTA--CTAGCTATTTTCTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281763 21 - 204787373 TCAGTTA--CTAGCTATTCTCTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    180985 21 - 192460366 TCAGTTA--CTAGCTATTCTCTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200455 21 -  11645122 TCAGTTA--CTAGCTATTCTCTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185676 21 -   6739814 TCAGTTA--CTAGCTATTCTCTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76292 21 - 101219884 TCAGTTA--CTAGCTATTCTCTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197858 21 -    785044 TCAGTTA--CTAGCTATTCTCTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86125 21 -  10971483 TCAATTA--CTAGCTATTCTCTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942256 21 -  13128814 TCAATTA--CTAGCCAGCTTCTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673346 21 +  14377064 TCAATTA--CTAGCCAGCTTCTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141052 21 -   9889416 TCAATTA--CTAGCCAGTTTCTT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772290 18 +  38779656 TCGATTA--TTTGCTG---TCTT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719538 21 -  98207768 AAAATTA--CTAGCTGTTTTTCA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28809348 23 -  39895921 tcatttattttatttattttttt
i canFam3.chr31                C 0 I 908
e micMur3.chr31                 30892150 1246 -  47401472 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e dasNov3.JH568778               6701027 2444 +   6883506 I

a score=1200227.000000
s hg38.chr14_GL000009v2_random    197664 161 +    201709 TTGGAACtgttggagttgga----gaactttccctctaccctctgaagg---------------------------------------------------------------------t-------gtg---------------------------------ataactgagtctattgaataaatggataacagg-catgtcaaaagaagaaaatgtgtacacat---ttattacacgcatgggggaatcacaggaaagaaaagtggaaTCA-----aaaa----ca
s panTro5.chr9                  41887463 166 + 116767853 TTGGAACTGTAGAACTTgga----gacctttccctctaccctctgaagg---------------------------------------------------------------------t-------atg---------------------------------ataactgagtctattgaataaatggataacagg-catgtcaaaagaagaaaatatgtacacat---ttattacacgcatgggggaatcacaggaaagaaaagtggaataaaaaacaaaa----ca
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853295 168 + 205426864 TTGGAACTGTAGGACTggga----gaactttccctctaccctctgaagg---------------------------------------------------------------------ttatcgtaatg---------------------------------ataactgagtctatgaaataaatggataacagg-catgtcaaaagaagaaaaggtgtacacat---ttattacatgcatgggggaatcacaggagagaaaagtggatgca-----aaac----ca
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13002 161 +  12760026 TTGGAACtgtaggactggga----gaactttccctctaccctctgaagg---------------------------------------------------------------------t-------atg---------------------------------ataactgagtctatgaaataaatggataacagg-catgtcaaaagaagaaaaggtgtacacat---ttattacatgcatgggggaatcacaggaaagaaaagtggatgca-----aaaa----ca
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126374 161 -  86207423 TTGGAACtgtaggactggca----gaactttccctctaccctctgaagg---------------------------------------------------------------------t-------atg---------------------------------ataactgagtctatgaaataaatggataacggg-catgtcaaaagaagaaaaggtgtacacat---ttattacacgcatggggaaatcacaggaaagaaAAGTGGATGCA-----aaaa----ca
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204281784 221 - 204787373 TCGGAATGGTAGGA-Tggga----aaactttccctctgccctctgaaggtGATATGATAACTGATATCTATGAAATAAACGGATAACAAGCACGtc------agacctctgaaggtgat-------atg---------------------------------ataactgagtc--tgaaataaacggataacagg-catgtcgaaagaagaaaagttatacacat---ttattacatgcatgggggaatcacgggaaaGAAAATTGGATGTA-----aaaa----ca
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    181006 225 - 192460366 TCGGAATGGTAGGA-TGGGA----AAAGTTTCCCTCTGCCCTCTGAAGGTGATATGATAACTGA-GTCTCTGAAATAAACGGATAACAGGCACGTCGAAAGAAGAcctctgaagg---t-------atg---------------------------------ataactgagtctatgaaataaacggataacagg-catgtcgaaagaagaaaagttatacacat---ttattacatgcatgggggaatcacgggaaaGAAAATTGGATGTA-----aaaa----ca
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200476 222 -  11645122 TCGGAATGGTAGGA-Tggga----aaactttccctctgccctctgaaag---tatgataactga-gtctatgaaataaacggataa-------------------------------------------caggcacgtcgaaagaagacctctgaaggtacgataactgagtctatgaaataaacggatagcagg-catgtcgaaagaagaaaagttatacacat---ttattacatgcatgggggaatcacgggaaaGAAAATTGGATGTA-----aaaa----ca
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185697 160 -   6739814 TCGGAATGGTAGGA-Tggga----aaactttccctctgccctctgaaag---------------------------------------------------------------------t-------atg---------------------------------ataactgagtctatgaaataaacggataacagg-cctgtcgaaagaagaaaaggtatacacat---ttattacatgcatgggggaatcacaggaaaGAAAATTGGATGTA-----aaaa----ca
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76313 160 - 101219884 TCGGAATGGTAGGA-Tggga----aaactttgcctctgccctctgaaag---------------------------------------------------------------------t-------atg---------------------------------ataactgagtctatgaaataaacggataacagg-catgtcgaaagaagaaaaggtatacacat---ttattacatgcatgggggaatcacaggagaGAAAATTGGATGTA-----aaaa----ca
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          197879 160 -    785044 TCGGAATGGTAGGA-Tggga----aaactttccctctgccctctgaaag---------------------------------------------------------------------t-------atg---------------------------------ataactgagtctatgaaataaatgggtaacagg-cctgtcgaaagaagaaaaggtatacacat---ttattacatgcatgggggaatcacaggaaaGAAAATTGGATGTA-----aaaa----ca
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86146 161 -  10971483 TCGGAATGgtaggagtggga----aaaatttccctctgccctctgaagg---------------------------------------------------------------------t-------atg---------------------------------ataactgagtctatgaaataaacggataacagg-cacgtcgaaagaagaaaagatatacacat---ttattacctgcgtgggggaatcacaggaaaGAAAATTGGATGTA-----aaaa----ca
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942277 154 -  13128814 TTGGAACTGTAGGACTggga----aaactttccttctgtcttcttaggg---------------------------------------------------------------------t-------atg---------------------------------ataactga--ctatgaaataaatggataacagg-catatcaaaagaatgaaaggtatacacat---ttattgcatgcacagggggatcatgggaaagaaaagtggatgca--------------a
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673367 160 +  14377064 TTCGAACtgtaggactggga----aaactttccttctatcctctgaggg---------------------------------------------------------------------t-------atg---------------------------------ataactgactctatgaaataaatggataacagg-catatcaaaagaatgaaaggcatacacat---ttattacatgcaca-ggggatcacaggaaagaaAAGTGGATGca-----aaaa----ca
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141073 161 -   9889416 TTGGAACtgtaggactggga----aaactttccttctatcctctgaggg---------------------------------------------------------------------t-------atg---------------------------------ataactgactctacgaaataaatggataacagg-catatgaaaagaatgaaaggtatacacat---ttattacatgcacagggggatcacaggaaagaaaagtggatgca-----aaaa----ca
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772308 166 +  38779656 TTGGAAGTGAAGGG---GAA----GGAAGTTGGCCAAGATGTCtgaggg---------------------------------------------------------------------t-------ttt---------------------------------gtaacagagtctatgaactaaactgataacagattagattaaaaggagaaaaggtatctaaatttattattacatgcatgggggcatcacaggaaagaaaagtgaatact-----aaaaaccctg
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719559 117 -  98207768 TTTGAACGTAAAGGAAGGGACTAGGAACTTTCCTCCTAACCTCTGAGGA---------------------------------------------------------------------T-------TCC---------------------------------ATGACCCAGCCTAGATAATAAGCTGACAAGAGG-------------------------CGCAA------------------------GACAGGAAAGAAAA---GAGCCA-----CAAG----CA
i mm10.chr16                   C 0 I 37
e micMur3.chr31                 30892150 1246 -  47401472 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e canFam3.chr31                 28809371 908 -  39895921 I
e dasNov3.JH568778               6701027 2444 +   6883506 I

a score=199756.000000
s hg38.chr14_GL000009v2_random    197825 33 +    201709 aaacaaaac-aaacaaaacaccaccaagaaaaaa
s panTro5.chr9                  41887629 33 + 116767853 aaacaaaac-aaacaaaacaccaccaagaaaaaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853463 34 + 205426864 aaacaaaacaaaacaaaacgccaccaagaaaaaa
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13163 24 +  12760026 ----------aaacaaaacaccaccaagaaaaaa
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126535 33 -  86207423 aaacaaaac-aaacaaaacaccaccaagaaaaaa
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282005 28 - 204787373 gaacaaaac-aaacaaa-----accaagaaaaaa
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    181231 33 - 192460366 gaacaaaac-aaacaaaacatcaccaagaaaaaa
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200698 33 -  11645122 gaacaaaac-aaacaaaacatcaccaagaaaaaa
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185857 33 -   6739814 aaacaaaac-aaacaaaacaCCGCCAAGAAAAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76473 33 - 101219884 aaacaaaac-aaacaaaacatcaccaagagaaaa
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198039 33 -    785044 aaacaaaac-aaacaaaacaCCGCCAAGAAAAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86307 33 -  10971483 aaacaaaac-aaacaagacatcaccaagaaaaaa
i colAng1.NW_012123820v1       C 0 I 1
s saiBol1.JH378168              10942431 28 -  13128814 aaacaaaac-aaaca-----ccaacaacaaataa
i saiBol1.JH378168             C 0 I 1
s cebCap1.NW_016107322v1         7673527 28 +  14377064 aaacaaaac-aaaca-----ccaacgacaaaTAA
i cebCap1.NW_016107322v1       C 0 I 1
s aotNan1.NW_018487195v1         4141234 28 -   9889416 aaacaaacc-aaaca-----ccaacaacaaataa
i aotNan1.NW_018487195v1       C 0 I 1
s otoGar3.GL873528              20772474 13 +  38779656 aatcaaaac--aaca-------------------
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22719676 37 -  98207768 I
e micMur3.chr31                 30892150 1246 -  47401472 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e canFam3.chr31                 28809371 908 -  39895921 I
e dasNov3.JH568778               6701027 2444 +   6883506 I

a score=-2252.000000
s hg38.chr14_GL000009v2_random    197858 1 +    201709 -a
s panTro5.chr9                  41887662 1 + 116767853 -c
i panTro5.chr9                 C 0 C 0
s nomLeu3.chr21                 42126568 1 -  86207423 -c
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282033 1 - 204787373 -c
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    181264 1 - 192460366 -c
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200731 1 -  11645122 -c
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185890 1 -   6739814 -C
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76506 1 - 101219884 -c
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198072 1 -    785044 -C
i manLeu1.NW_012099043v1       C 0 C 0
s otoGar3.GL873528              20772487 1 +  38779656 a-
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22719676 37 -  98207768 I
e micMur3.chr31                 30892150 1246 -  47401472 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e aotNan1.NW_018487195v1         4141262 1 -   9889416 I
e canFam3.chr31                 28809371 908 -  39895921 I
e colAng1.NW_012123820v1           86340 1 -  10971483 I
e dasNov3.JH568778               6701027 2444 +   6883506 I
e cebCap1.NW_016107322v1         7673555 1 +  14377064 I
e saiBol1.JH378168              10942459 1 -  13128814 I
e panPan2.chr3                  77853497 0 + 205426864 C
e gorGor5.CYUI01015020v1           13187 0 +  12760026 C

a score=159671.000000
s hg38.chr14_GL000009v2_random    197859 18 +    201709 cCCAGTGAGATTTAGGAG
s panTro5.chr9                  41887663 18 + 116767853 cccagtgagatttaggag
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853497 18 + 205426864 cccagtgagatttaggag
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13187 18 +  12760026 cccagtgagatttaggag
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126569 18 -  86207423 CCCAGTGAGATTTAGAAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282034 18 - 204787373 CCCAGTTAGATTTAGGAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    181265 18 - 192460366 CCCAGTTAGATTTAGGAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200732 18 -  11645122 CCCAGTTAGATTTAGGAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185891 18 -   6739814 CCCAGTTAGATTTAGGAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76507 18 - 101219884 CCCAGTTAGATTAAGGAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198073 18 -    785044 CCCAGTTAGATTTAGGCG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86341 18 -  10971483 CCCAGTTAGATTTAGGAG
i colAng1.NW_012123820v1       I 1 C 0
s saiBol1.JH378168              10942460 18 -  13128814 cccagtgagatttaggat
i saiBol1.JH378168             I 1 C 0
s cebCap1.NW_016107322v1         7673556 18 +  14377064 CCCAGTGAGATTTAGGAT
i cebCap1.NW_016107322v1       I 1 C 0
s aotNan1.NW_018487195v1         4141263 17 -   9889416 -ccagtgagatttgggat
i aotNan1.NW_018487195v1       I 1 C 0
s otoGar3.GL873528              20772488 18 +  38779656 tcccgagagatttaagac
i otoGar3.GL873528             C 0 C 0
e mm10.chr16                    22719676 37 -  98207768 I
e micMur3.chr31                 30892150 1246 -  47401472 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e canFam3.chr31                 28809371 908 -  39895921 I
e dasNov3.JH568778               6701027 2444 +   6883506 I

a score=1614511.000000
s hg38.chr14_GL000009v2_random    197877 194 +    201709 C-------------TTATAGGGAAGGCAGGAGGAAGAATGTAGGAAAC-TTA--GGGGAGAGCAAATGACTTTTGGGAAAGATGACCAGAcccttaggagaatagatgatagtttgtggcagtctgtcttagtgtggt-------atggacccttagtcttgtctcctgtgatatgaggagtcgattttccctggctgatgaaactcctaggaagga
s panTro5.chr9                  41887681 194 + 116767853 c-------------ttatagggaaggcaggaggaagaatgtaggaaac-tta--ggggagagcaaatgacttttgggaaagatgaccagacccctaggagaatagatgatagtttgatgcagtctgtcttggtgtgga-------atggactcttagtcttgtatcctgtgatatgaggagtcaattttccctggctgatgaaactcctaggaagga
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853515 194 + 205426864 c-------------ttatagggaaggcaggagggagaatgtagaaaac-tta--ggggagagcaaatgacttttgggaaagatgaccagacccttagcagaatagatgatagtttgtgacagtctgtcttggtgtggt-------atggactcttagtcttctctcctgtgataggaggagtcaattttccctggctaatgaaactcctaggaagga
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13205 194 +  12760026 c-------------ttatagggaaggcaggagggagaatgtagaaaac-tta--ggggagagcaaatgacttttgggaaagatgaccagacccttagcagaatagatgatagtttgtgacagtctgtcttggtgtggt-------atggactcttagtcttatctcctgtgatatgaggagtcaattttccctggctaatgaaactcctaggaagga
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126587 194 -  86207423 C-------------TTATAGGGAAGGCAGGAGGGAGAATGTAGGAAAC-TTA--GGGGAGGGGAaatttcttttgggaaagatgaccagacccttagcagaatagatgatagtttgtgacagtctgtcttggtgtggt-------ttgaactcttagtcttctctcctgtgatacgaggagtcaattttccctggctgatggcactcctaggaagga
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282052 182 - 204787373 C-------------TTATAGGGAAGGCAGGAGGGAGAATGTAGGACAC-TCA--GTGGGGAGGAA----------GGAAAGATGGCCAGACTCTTGGCagagtagatgatagtttgtgaca--ctgtcttggtgtggt-------gtggactctttgtcttctctcctgtgatatgaggagttaattttccctggctgatgaaactcctaggaaggA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    181283 182 - 192460366 C-------------TTATAGGGAAGGCAGGAGGGAGAATGTAGGACAC-TCA--GTGGGGAGGAA----------GGAAAGATGGCCAGACTCTTGGCagagtagatgatagtttgtgaca--ctgtcttggtgtggt-------gtggactcttcgtcttctctcctgtgatatgaggagttaattttccctggctgatgaaactcctaggaaggA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200750 182 -  11645122 C-------------TTATAGGGAAGGCAGGAGGGAGAATGTAGGACAC-TCA--GTGGGGAGGAA----------GGAAAGATGGCCAGACTCTTGGCagagtagatgatagtttgtgaca--ctgtcttggtgtggt-------atggactcttcgtcttctctcctgtgatatgaggagttaattttccctggctgatgaaactcctaggaaggA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          185909 192 -   6739814 C-------------TCATAGGGAAAGCAGGAGGGAGAATGTAGGAAAC-Tca--gtggggagcaaatgacttttgggaaagatggccagactcttggcagagtagatgatagtttgtgaca--ctgtcttggtgtggt-------atggactctttgtcttctctcctgtgatatgaggagttaattttccctggctcatgaaactcctaggaaggA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76525 189 - 101219884 C-------------TTATAGGAAAAGCAGGAGGGAGAATGTAGGAAAC-TCA--GTGGGGAGCAA----------GGAAAGATGGCCAGACTCTTGGCagaatagatgatagtttgtgaca--ctgtcttggtgtggtccacaggatggactcttcgtcttctctcctgtgatatgaggagttaattttccccggctgatgaaactcctaggaagCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198091 191 -    785044 C-------------TTATAGGGAAAGCAGGAGGGAGAATGTAGGAAAC-Tca--gtggggagcaaatgacttttgggaaagatggccagactcttggcagagtggatgatagtttgtgaca--ctgtctgggtgtggt-------atggactcttcgtcttctctcctgtgatatgaggagttaa-tttccctggctgatgaaactcctagaaaggA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86359 191 -  10971483 C-------------TTACAGGGAAGGCAGGAGGGAGAATGTAGGAAAC-TTa--gtggggagcaaatgacttttgggaaagatggccagactctt---agaatagttgatagtttgtgacagtctgtcttggtgtggt-------atggactcttagtcttctctcctgtgatatgaggagttaattttccctggctgatgaaactcctaggaagga
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942478 194 -  13128814 c-------------ttataggaaaggcaggagggacaatgtaggaaat-tta--ggggagagcaaatgactttcgggaaagatgatcagacccttagcagaagacatgatagtttgtgacagtctgtctggatgtggt-------atggactcctagtgttctctcctgtgatataaggagttatttttccctggttgatgaaactcctaggaagga
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673574 193 +  14377064 C-------------TTATAGGGAAGGCAGGAGGGACAATGTAGGAAAC-TTA--GGGGAGAGCAAATGACTTTC-AGAAGGATGATCAGAcccttagcagaagatgtgatagtttgtgacagtctgtctggatgtgat-------atggactcctagtgttctctcctgtgatataagaagttatttttccctggttgatgaaactcctaggaaggA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141280 193 -   9889416 c-------------ttaaagggaaggcaggagggacaaagtaggaaac-tta--ggggagagcaaataacttttgggaaagatgatcagacccttag-agaagacatgatagtttgtgacagtctctctggatgtggt-------atgaactcctagtgttctctcctgtgatataaggagttatttttccctggttgatgaaactcctaggaaggA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772506 202 +  38779656 ctcatctgccttcttcatagaaaagacaggagacaggatgtaggcaac-ggaagggggagagtaaatgattgggagaaaaactgaaggggcctt----agaataaaagatagtttgtgaca--tagtctgggtgtcac-------gtagacttcgagtgtcctctcctgtgatgtgaacagttaatattccctggttgat-aaactccctgaaaggg
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719713 151 -  98207768 -------------tttataggccagatggcaggg--tatgtaagcaacttta--gaggcgagtgaataatttggtggcaagatgagtggacctttagaaaaatacctgatggtaagaaaca--CTGC-----TGGAGT-------CTAGAC-----------------------------------TTTCCAGGAATGATAAAGGTCCTGGATGGAG
i mm10.chr16                   I 37 C 0
e micMur3.chr31                 30892150 1246 -  47401472 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e canFam3.chr31                 28809371 908 -  39895921 I
e dasNov3.JH568778               6701027 2444 +   6883506 I

a score=36023.000000
s hg38.chr14_GL000009v2_random    198071 3 +    201709 gat
s panTro5.chr9                  41887875 3 + 116767853 gat
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853709 3 + 205426864 gat
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13399 3 +  12760026 gat
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126781 3 -  86207423 gat
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282234 3 - 204787373 GAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    181465 3 - 192460366 GAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200932 3 -  11645122 GAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186101 3 -   6739814 GAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76714 3 - 101219884 GAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198282 3 -    785044 GAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86550 3 -  10971483 gat
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942672 3 -  13128814 gat
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673767 3 +  14377064 TAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141473 3 -   9889416 GAG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772708 3 +  38779656 gat
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719864 3 -  98207768 GAT
i mm10.chr16                   C 0 I 557
s canFam3.chr31                 28810279 3 -  39895921 GAT
i canFam3.chr31                I 908 C 0
e micMur3.chr31                 30892150 1246 -  47401472 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e dasNov3.JH568778               6701027 2444 +   6883506 I

a score=46532.000000
s hg38.chr14_GL000009v2_random    198074 6 +    201709 GAATGT
s panTro5.chr9                  41887878 6 + 116767853 GAATGT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853712 6 + 205426864 gaatgt
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13402 6 +  12760026 GAATGT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126784 6 -  86207423 gaatgt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282237 6 - 204787373 GAGTGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    181468 6 - 192460366 GAGTGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200935 6 -  11645122 GAGTGT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186104 6 -   6739814 GAGTGT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76717 6 - 101219884 GAGTGT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198285 6 -    785044 GAGTGT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86553 6 -  10971483 gaatgt
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942675 6 -  13128814 ggaTGT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673770 6 +  14377064 GGATAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141476 6 -   9889416 GGATGT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772711 5 +  38779656 taatg-
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28810282 6 -  39895921 GAATTT
i canFam3.chr31                C 0 C 0
e mm10.chr16                    22719867 557 -  98207768 I
e micMur3.chr31                 30892150 1246 -  47401472 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e dasNov3.JH568778               6701027 2444 +   6883506 I

a score=8202.000000
s hg38.chr14_GL000009v2_random    198080 1 +    201709 C
s panTro5.chr9                  41887884 1 + 116767853 C
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853718 1 + 205426864 c
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13408 1 +  12760026 C
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126790 1 -  86207423 c
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282243 1 - 204787373 C
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    181474 1 - 192460366 C
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200941 1 -  11645122 C
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186110 1 -   6739814 C
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76723 1 - 101219884 C
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198291 1 -    785044 C
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86559 1 -  10971483 c
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942681 1 -  13128814 T
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673776 1 +  14377064 C
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141482 1 -   9889416 C
i aotNan1.NW_018487195v1       C 0 C 0
s canFam3.chr31                 28810288 1 -  39895921 A
i canFam3.chr31                C 0 I 5
s dasNov3.JH568778               6703471 1 +   6883506 C
i dasNov3.JH568778             I 2444 C 0
e mm10.chr16                    22719867 557 -  98207768 I
e micMur3.chr31                 30892150 1246 -  47401472 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e otoGar3.GL873528              20772716 0 +  38779656 C

a score=13923.000000
s hg38.chr14_GL000009v2_random    198081 1 +    201709 T
s panTro5.chr9                  41887885 1 + 116767853 T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853719 1 + 205426864 t
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13409 1 +  12760026 T
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126791 1 -  86207423 t
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282244 1 - 204787373 T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    181475 1 - 192460366 T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200942 1 -  11645122 T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186111 1 -   6739814 T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76724 1 - 101219884 T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198292 1 -    785044 T
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86560 1 -  10971483 t
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942682 1 -  13128814 T
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673777 1 +  14377064 T
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141483 1 -   9889416 T
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893396 1 -  47401472 T
i micMur3.chr31                I 1246 C 0
s canFam3.chr31                 28810294 1 -  39895921 T
i canFam3.chr31                I 5 C 0
s dasNov3.JH568778               6703472 1 +   6883506 T
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22719867 557 -  98207768 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e otoGar3.GL873528              20772716 0 +  38779656 C

a score=411793.000000
s hg38.chr14_GL000009v2_random    198082 35 +    201709 TTGTGCTGACAAGACAGTATCTTGAAGT-TTTGATT
s panTro5.chr9                  41887886 35 + 116767853 TTGTGCTGACAAGACTGTATCTTGAAGC-TTTGTTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853720 35 + 205426864 ttgtgCTGACAAGACAATATCTTGAAGC-TTTGTTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13410 36 +  12760026 TTGTGCTGACAAGACAATATCTTGAAGCTTTTGTTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126792 35 -  86207423 ttgtgCTGATAAGACAGTGTCTTGAAGC-TTTATTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282245 35 - 204787373 TTGTGCTGACGAGACAGTATCTCAAAGC-TTTGTTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    181476 35 - 192460366 TTGTGCTGACGAGACAGTATCTCAAAGC-TTTGTTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200943 35 -  11645122 TTGTGCTGACGAGACAGTATCTCAAAGC-TTTGTTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186112 35 -   6739814 CTGTGCTGACAAGACAGTATCTTAAACC-TTTGTTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76725 35 - 101219884 TTGTGCTGACAAGACAGTATCTCGAAGC-TTTGTTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198293 35 -    785044 CTGTGCTGACAAGACAGTATCTCGAAGC-TTTGTTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86561 35 -  10971483 ttgtgCTGACAAGACAGTATCTCAAAGC-GTTGTTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942683 34 -  13128814 TTGGTCTGACAAGGCAGTATCTT-AAGC-TTTGTTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673778 34 +  14377064 TTGCTCTGATAAGGCAGTATCTT-AAGC-TTTGTTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141484 34 -   9889416 TTGCACTGACAAGGCAGTATCAT-AAGC-TTTGTTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893397 35 -  47401472 TTGTGCTGACAAGACAGTATTGTGAAGC-TTTGTTT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20772716 17 +  38779656 --------acaa----------tggagg-tttgttt
i otoGar3.GL873528             C 0 I 609
s mm10.chr16                    22720424 35 -  98207768 TTGTGCTGACAAGACAGTCTCTTATAGC-TTTGTAT
i mm10.chr16                   I 557 C 0
s canFam3.chr31                 28810295 35 -  39895921 TTGTGCTGACAAGACAGTATCTTGGGGC-TTTGTTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703473 35 +   6883506 TTTTGCTGACAGCGCAGTATCTTGGAGC-TTTGTTT
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I

a score=1621357.000000
s hg38.chr14_GL000009v2_random    198117 105 +    201709 TCCAATTCCGTTCTAAATCTGCAGTGTATAAAAATCTCCTCATCATGCTTTGGATGTTATGGTAGATAAATGGTATCTTTACAAAGATACATTCATTCTGGTATT
s panTro5.chr9                  41887921 105 + 116767853 TCCAATTCAGTTCTAAATCTGCAGTGTATAAAAATCTCCTCATCATGCTTTGGATGTTATGGTAGATAAATGGTATCTTTACAAAGAtacattcattctggtatt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853755 105 + 205426864 TCCATTTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATATTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTACT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13446 105 +  12760026 TCCATTTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATATTATGGTGGATAAATGGTATCTTCACAAAGAtacattcattctggtact
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126827 105 -  86207423 TCCAATTTAGTTCTAAATCTGCAGGGTATCAACATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGAtacattcattctggtatt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282280 105 - 204787373 TCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    181511 105 - 192460366 TCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          200978 105 -  11645122 TCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186147 105 -   6739814 TCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76760 105 - 101219884 TCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTTACAAAGATACATTCATTCTGGTATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198328 104 -    785044 TCCAACTCAGTTCTAAATCTGCAGTGTATC-AAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86596 105 -  10971483 TCCAACTCAGTTCTAAATTTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACGTTCATTCTGGTATT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942717 105 -  13128814 CCCAACTCGGTTCTAAATCTACAGTGTATCAAAATTTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTAGCAAAGATACATCCATTGTGTTACT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673812 105 +  14377064 TCCAACTCAGTTCTAAATCTACAGTGTATCAAAATTTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGATATCTTAGCAAAGATACATCCATTGTGTTATT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141518 105 -   9889416 TCCAACTCAGTTCTAAATCTGCAGTCTAGCAAAATTTCCTCATTATGCTTTGGATGTTATGGTAGGTAAATGATATCTTAGCAAAGATACATCCACTGTGGTATT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893432 105 -  47401472 TCCAACTCAGTTCTAAATCTGCAGTGTATCAAAGTCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATTGTATCTTCACAAAGATACATTCATTCTGGTATT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20773342 105 +  38779656 TCCAACTCAGTTCTGAATCTGCAGTGAATCCAAGTCTCTTCATTATGCTTGGTATGTTACGGTAGATAAATGCTGTCTTCACAAAGATACATTCGCTCTGGTATT
i otoGar3.GL873528             I 609 C 0
s mm10.chr16                    22720459 105 -  98207768 TCCAGTTCCGTTCTAAATCTGTGGAGTATCAAAGTCTAGCCATTATGCTTTGGGTGTTATAGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGCTATT
i mm10.chr16                   C 0 T 650
s canFam3.chr31                 28810330 105 -  39895921 TCCAAGTCAGTTCTAAATCTGCAGTGTATCAAAGTCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703508 105 +   6883506 TCCAACCTAGTTCTAAATCTGCAGTGTATCAAAGTCTCCTCATTATGCTTCGGATGTTATAGTAGATAAATGGAATCTTCACAAAGATACATTCATTATGGTATT
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I

a score=19000.000000
s hg38.chr14_GL000009v2_random    198222 1 +    201709 G
s panTro5.chr9                  41888026 1 + 116767853 g
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853860 1 + 205426864 G
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13551 1 +  12760026 g
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126932 1 -  86207423 g
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282385 1 - 204787373 G
i rheMac8.chr2                 C 0 I 577
s macFas5.chr2                    181616 1 - 192460366 G
i macFas5.chr2                 C 0 I 532
s macNem1.NW_012010856v1          201083 1 -  11645122 G
i macNem1.NW_012010856v1       C 0 I 513
s cerAty1.NW_012001605v1          186252 1 -   6739814 G
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    76865 1 - 101219884 G
i chlSab2.chr22                C 0 I 626
s manLeu1.NW_012099043v1          198432 1 -    785044 G
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86701 1 -  10971483 G
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942822 1 -  13128814 G
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673917 1 +  14377064 G
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141623 1 -   9889416 G
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893537 1 -  47401472 G
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20773447 1 +  38779656 G
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719914 1 -  98207768 G
i mm10.chr16                   T 650 C 0
s canFam3.chr31                 28810435 1 -  39895921 G
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703613 1 +   6883506 G
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I

a score=41780.000000
s hg38.chr14_GL000009v2_random    198223 3 +    201709 AAA
s panTro5.chr9                  41888027 3 + 116767853 aaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853861 3 + 205426864 AAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13552 3 +  12760026 aaa
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126933 3 -  86207423 aaa
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282963 3 - 204787373 AAA
i rheMac8.chr2                 I 577 C 0
s macFas5.chr2                    182149 3 - 192460366 AAA
i macFas5.chr2                 I 532 C 0
s macNem1.NW_012010856v1          201597 3 -  11645122 AAA
i macNem1.NW_012010856v1       I 513 C 0
s cerAty1.NW_012001605v1          186253 3 -   6739814 AGA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    77492 3 - 101219884 AAA
i chlSab2.chr22                I 626 C 0
s manLeu1.NW_012099043v1          198433 3 -    785044 AGA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86702 3 -  10971483 AGA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942823 3 -  13128814 AAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673918 3 +  14377064 AAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141624 3 -   9889416 AAA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893538 3 -  47401472 AAA
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20773448 3 +  38779656 AAA
i otoGar3.GL873528             C 0 T 718
s mm10.chr16                    22719915 3 -  98207768 AAA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28810436 3 -  39895921 AAA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703614 3 +   6883506 AAA
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I

a score=25534.000000
s hg38.chr14_GL000009v2_random    198226 2 +    201709 GT
s panTro5.chr9                  41888030 2 + 116767853 gt
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853864 2 + 205426864 GT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13555 2 +  12760026 gt
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126936 2 -  86207423 gt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282966 2 - 204787373 GT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182152 2 - 192460366 GT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          201600 2 -  11645122 GT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186256 2 -   6739814 AT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    77495 2 - 101219884 GT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198436 2 -    785044 AT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86705 2 -  10971483 AT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942826 2 -  13128814 GT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673921 2 +  14377064 GT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141627 2 -   9889416 GT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893541 2 -  47401472 GT
i micMur3.chr31                C 0 T 647
s otoGar3.GL873528              20772733 2 +  38779656 gt
i otoGar3.GL873528             T 718 C 0
s mm10.chr16                    22719918 2 -  98207768 GC
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28810439 2 -  39895921 AT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703617 2 +   6883506 GT
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I

a score=46082.000000
s hg38.chr14_GL000009v2_random    198228 4 +    201709 TCCT
s panTro5.chr9                  41888032 4 + 116767853 tcct
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853866 4 + 205426864 TCCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13557 4 +  12760026 tcct
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126938 4 -  86207423 tcct
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282968 4 - 204787373 TCCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182154 4 - 192460366 TCCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          201602 4 -  11645122 TCCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186258 4 -   6739814 TCCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    77497 4 - 101219884 TCCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198438 4 -    785044 TCCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           86707 4 -  10971483 TCCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942828 4 -  13128814 TCCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673923 4 +  14377064 TCCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141629 4 -   9889416 TCCT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772735 3 +  38779656 -ttg
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719920 4 -  98207768 TTCT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28810441 4 -  39895921 GCCT
i canFam3.chr31                C 0 T 611
s dasNov3.JH568778               6703619 4 +   6883506 GCCT
i dasNov3.JH568778             C 0 T 397
e micMur3.chr31                 30893543 647 -  47401472 T
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I

a score=44856.000000
s hg38.chr14_GL000009v2_random    198232 5 +    201709 TTTGG
s panTro5.chr9                  41888036 5 + 116767853 tttgg
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853870 5 + 205426864 TTTGG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13561 5 +  12760026 ttcgg
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126942 5 -  86207423 tttgg
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282972 5 - 204787373 TTTGG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182158 5 - 192460366 TTTGG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          201606 5 -  11645122 TTTGG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186262 5 -   6739814 TTTGg
i cerAty1.NW_012001605v1       C 0 I 498
s chlSab2.chr22                    77501 5 - 101219884 TTTGG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198442 5 -    785044 TTTGg
i manLeu1.NW_012099043v1       C 0 I 498
s colAng1.NW_012123820v1           86711 5 -  10971483 TTTGg
i colAng1.NW_012123820v1       C 0 T 2897
s saiBol1.JH378168              10942832 5 -  13128814 TTTGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673927 5 +  14377064 TTCGG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141633 5 -   9889416 TTTGA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772738 4 +  38779656 tttg-
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719924 5 -  98207768 ACTGG
i mm10.chr16                   C 0 C 0
e micMur3.chr31                 30893543 647 -  47401472 T
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e canFam3.chr31                 28810445 611 -  39895921 T
e dasNov3.JH568778               6703623 397 +   6883506 T

a score=22590.000000
s hg38.chr14_GL000009v2_random    198237 7 +    201709 AGGATCT
s panTro5.chr9                  41888041 7 + 116767853 aggatct
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853875 7 + 205426864 AGGGTCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13566 7 +  12760026 agggtct
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126947 7 -  86207423 gggattt
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282977 7 - 204787373 AGGATGT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182163 7 - 192460366 AGGATGT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          201611 7 -  11645122 AGGATGT
i macNem1.NW_012010856v1       C 0 C 0
s chlSab2.chr22                    77506 7 - 101219884 AGGATAT
i chlSab2.chr22                C 0 C 0
s colAng1.NW_012123820v1           83819 7 -  10971483 AGGATAT
i colAng1.NW_012123820v1       T 2897 C 0
s saiBol1.JH378168              10942837 7 -  13128814 AGGAtct
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673932 7 +  14377064 AGGACAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141638 4 -   9889416 AGAA---
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772742 7 +  38779656 agggcct
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719929 1 -  98207768 -G-----
i mm10.chr16                   C 0 C 0
e micMur3.chr31                 30893543 647 -  47401472 T
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e canFam3.chr31                 28810445 611 -  39895921 T
e dasNov3.JH568778               6703623 397 +   6883506 T
e manLeu1.NW_012099043v1          198447 498 -    785044 I
e cerAty1.NW_012001605v1          186267 498 -   6739814 I

a score=599826.000000
s hg38.chr14_GL000009v2_random    198244 75 +    201709 CTCTTGAGGAACGTAAAGGGAGTGCAGAGAAAGCATGtctcgcatttgttgtttttcaaatattttcagttcgat
s panTro5.chr9                  41888048 75 + 116767853 ctcttgaggaacataaagggagtgcagagaaagcatgtcccgcagttgttatttttcaactattttcagttcgat
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853882 75 + 205426864 CTCttgaggaaggtaaagggagtgcagagaaagcatgtcccgcatttgttgtttttcaaatattttcagttcgat
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13573 75 +  12760026 ctcttgaggaaggtaaagggagtgcagagaaggcatgtcccgcatttgttgtttttcaaatattttcagttcgat
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42126954 75 -  86207423 ctctttaggaaggtaaagggagtgcagagaaagcatgtcccgcatttgttgtttttcacatattttcagttcgat
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204282984 73 - 204787373 CTAtttaggaaggtaaagagagctcagagaaa--atgtcccgcatttgtcgtttttcacatattttcagtttgat
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182170 73 - 192460366 CTAtttaggaaggtaaagagagctcagagaaa--atgtcccacatttgttgtttttcacatattttcagtttgat
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          201618 73 -  11645122 CTCtttaggaaggtaaagagagctcagagaaa--atgtcccacatttgttgtttttcacatattttcagtttgat
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186765 75 -   6739814 CTCtttaggaaggtaaagagagttcagagaaagcatgtcctgcatttgttgtttttcacatattttcagtttgat
i cerAty1.NW_012001605v1       I 498 C 0
s chlSab2.chr22                    77513 75 - 101219884 CTCtttaggaaggtaaagagagttcagagaaagcatgtcctgcatttgttgtttttcacatattttcagtttgat
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          198945 75 -    785044 CTCtttaggaaggtaaagagagttcagagaaagcatgtcctgcatttgttgtttttcacatattttcagtttgat
i manLeu1.NW_012099043v1       I 498 C 0
s colAng1.NW_012123820v1           83826 75 -  10971483 ATCTTCAGGAAGGTAAAGAGAGTTCAGAGAAAGCATGCcccgcatttgttgtttttcacatattttcagttcgat
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942844 74 -  13128814 ttctttagaaaggtaaagggagttcagagaaagcatgtcccac-attgttgtttttcacatattttcagttcgat
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7673939 74 +  14377064 TTCTTTAGAAAGGTAAAGGGAGTTCAAAGAAAGCATGTCCCAC-ATTGTTGTTTTTCACATATTTtcagttcgat
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141642 74 -   9889416 -TCtttaggaagataaagggagttcagagaaagcatgtcccacgattgttgtttttcacatattttcagttcaat
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20772749 65 +  38779656 gtctttaggcagataaggagagttcagaaaaagc---ttctgtatttgccatttatc-----cattcaagttg--
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719930 32 -  98207768 ----------------------------------ATGTC---------TCATTGTTAAAAGCCTTTCCATTGGAA
i mm10.chr16                   C 0 C 0
e micMur3.chr31                 30893543 647 -  47401472 T
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e canFam3.chr31                 28810445 611 -  39895921 T
e dasNov3.JH568778               6703623 397 +   6883506 T

a score=547820.000000
s hg38.chr14_GL000009v2_random    198319 50 +    201709 gtaatcagtacaccaaagcaatccatttaggactggcatttcctgaacac
s panTro5.chr9                  41888123 50 + 116767853 gtaatcagtacaccaaagcaatccatttaggactggcatttcctgaacac
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77853957 50 + 205426864 gtaatcagtacaccaaagcaatccacttagggctggcatttcctgaacac
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13648 50 +  12760026 gtaatcagtacaccaaagcaatccacttagggctggcatttcctgaacac
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127029 50 -  86207423 gtaatcagtacaccaaagcaatccactcagggctggcatttcctgaacac
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204283057 50 - 204787373 gtaatcagtacacgaaagcaatacatttagggctggcatttcctgaacac
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182243 50 - 192460366 gtaatcagtgcaccaaagcaatacatttagggctggcatttcctgaacac
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          201691 50 -  11645122 gtaatcagtacaccaaagcaatacatttagggctggcatttcctgaacac
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186840 50 -   6739814 gtaatcagtgcaccaaagcaatacatttagggctggcatttcctgaacac
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    77588 50 - 101219884 gtaatcagtacaccaaagcaatacatttagggctggcatttcctgaacac
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199020 50 -    785044 gtaatcagtgcaccaaagcaatacatttagggctggcatttcctgaacac
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           83901 50 -  10971483 ataatcagtacaccaaagcaatacgtttagggctggcatttcctgaacac
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10942918 50 -  13128814 gtaatcagtataccaaagcaatatatttagaaatggcatttcctgaactt
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674013 50 +  14377064 gtaatcagtataccaaagcaatatatttaggaatggcatttcctgaactt
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141716 50 -   9889416 gtaatcagtataccaaagcaatatatttagggatggcatttcctgaacat
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30892896 50 -  47401472 gtaatcagtataccaaagcagtatattttagggtggcattttttgaattc
i micMur3.chr31                T 647 C 0
s otoGar3.GL873528              20772814 46 +  38779656 ----tcagtacaccaaagctgtatattttggggtgggatcttctgaattc
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22719962 50 -  98207768 GTAACTTGCATACCATAGTACCTCATGCTGGGGTGACACTTCCTGGACTC
i mm10.chr16                   C 0 C 0
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e canFam3.chr31                 28810445 611 -  39895921 T
e dasNov3.JH568778               6703623 397 +   6883506 T

a score=1003659.000000
s hg38.chr14_GL000009v2_random    198369 91 +    201709 cttcaGAACTCTTTT-TATCCCATGTTATTTCTATGAGATCACGTGATTTAAGAATAACTTTTACTTGCCACTTACATATATATTGAAAAGG
s panTro5.chr9                  41888173 91 + 116767853 cttcaGAACTCTTTT-TATCCCATGTTATTTCTATGAGATCACGTGATTTAAGAACAACTTTTACTAGCCACTTACGTATATATTGAAAAGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854007 92 + 205426864 cttcaGAACTCTTTTGGATCCCATGTTATTTCTATCAGATCATGTGATTTAAGAACAACTTTTACTTGCCACTTACATATATATTGAAAAGG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13698 92 +  12760026 cttcaGAACTCTTTTGGATCCCATGTTATTTCCATCAGATCATGTGATTTAAGAACAACTTTTACTTGCCACTTACATATATATTGAAAAGG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127079 92 -  86207423 cctcaGAACTCTTTTCCATCCCCTGTTATTTCTATCAGATCATGTGATTTAAGAACAACTTTTACTTGCCACTTACATATATATTGAAAAGG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204283107 92 - 204787373 cttcaGAACTCTTTTTGATCCCATGTTATTTCTATCAGATCACGTGATTTAAGAACAACTTTTACCTACCACTTACATATATATTGAAAAGG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182293 92 - 192460366 cttcaGAACTCTTTTTGATCCCATGTTATTTCTATCAGATCACGTGATTTAAGAACAACTTTTACCTACCACTTACATATATATTGAAAAGG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          201741 92 -  11645122 cttcaGAACTCTTTTTGATCCCATGTTATTTCTATCAGATCACGTGATTTAAGAACAACTTTTACCTACCACTTACATATATATTGAAAAGG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186890 92 -   6739814 gttcaGAACTCTTTTTGATCCCATGTTATTTCTATCAGATCACGTGATTTAAGAACAACTTTTACCTGCCACTTACATATATATTGAAAAGG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    77638 92 - 101219884 cgtcaGAACTCTTTTTGATCCCGTGTTATTTCTATCAGATCACGTGATTTAAGAACAACTTTTACCTGCCACTTACATATATATTGAAAAGG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199070 92 -    785044 attcaGAACTCTTTTTGATCCCATGTTATTTCTATCAGATCACGTGATTTAAGAACAACTTTTACCTACCACTTACATATATATTGAAAAGG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           83951 92 -  10971483 cttcaCAACTCTTTTTGATCCCATGTTATTTCTATCAGATCACGTGATTTAAGAACAACTTTCACCTGCCACTTACATATATATTGAAAAGG
i colAng1.NW_012123820v1       C 0 I 6725
s saiBol1.JH378168              10942968 90 -  13128814 cttcaG--CTCTTTTTAATCCCATTTTATTTCTATCAGATGATGTGATTTAAGAACAACTTTTACTTGCCACTTACATATATATTTGAAAAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674063 90 +  14377064 cttcag--AACTCTTTAATCCCATGTTATTTCTATCAGATGATGTGATTTAAGAACAACTTTTACTTGCCACTTACATATATATTTGAAAAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141766 92 -   9889416 cttcaGAACTCTTTTTAATCCCATGTTATTTCTATCAGATCATGTGATTTAAGAACAACTTTTACTTGCCACTTACATATATATTTGAAAAG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30892946 92 -  47401472 catcaGAACTCTTTTCAATCCTATGTTATTTCTATCAGATAACGTGAATAAAGAATGACTTTTGCTTGTCACTTGCTTGTTTATGGAAAAAG
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20772860 92 +  38779656 cctcaGAACTCTTTTCGATCCTATGTTATTTCTATCAGATAATGTCAATAAAGAACAACTTTTCCTTGCCACTTGCTTGTACACTGAAAAAG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22720012 83 -  98207768 CTTCAGAACTATTTATGATCCT---CTTCTTTGATGTGATAATTTGAGTGAAGAAAAACTTT------CTGTTTTCCTTTTTTTTTAAAAAA
i mm10.chr16                   C 0 I 2
s canFam3.chr31                 28809834 78 -  39895921 CTTTGAGATTCTTT--GTTTCTA---TATTTCTATCAGAAAATGTGAATAAAAAATATCTT---------ACTTGCAGGTATATCAAAATGA
i canFam3.chr31                T 611 C 0
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e dasNov3.JH568778               6703623 397 +   6883506 T

a score=181696.000000
s hg38.chr14_GL000009v2_random    198460 18 +    201709 TAAACTTTCC-TTTCGTAG
s panTro5.chr9                  41888264 18 + 116767853 CAAACTTTCC-TTTCATAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854099 18 + 205426864 CAAACTTTCC-TTTCATAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13790 18 +  12760026 CAAACTTTCC-TTTCATAG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127171 18 -  86207423 CAAACTTTCC-TTTCATAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204283199 18 - 204787373 CAAACTTTCC-TTTCATAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182385 18 - 192460366 CAAACTTAAC-TTTCATAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          201833 18 -  11645122 CAAACTTAAC-TTTCATAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          186982 18 -   6739814 CAAACTTTCC-TTTCATAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    77730 18 - 101219884 CAAACTTTCC-TTTCATAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199162 18 -    785044 CAAACTTTCC-TTTCATAG
i manLeu1.NW_012099043v1       C 0 C 0
s saiBol1.JH378168              10943058 18 -  13128814 CAAACTTTCC-TTTCATAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674153 18 +  14377064 CAAACTTTCC-TTTTGTAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141858 18 -   9889416 CAAACATTTC-TTTCATAG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893038 18 -  47401472 CAAATTTTCT-TTTCATAT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20772952 18 +  38779656 CAAATTTTTT-TTCCATAT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22720097 19 -  98207768 CAAGTTTTTCTTTTCATGA
i mm10.chr16                   I 2 C 0
s canFam3.chr31                 28809912 19 -  39895921 CAGATTTTTCTTTTCATAT
i canFam3.chr31                C 0 C 0
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e colAng1.NW_012123820v1           84043 6725 -  10971483 I
e dasNov3.JH568778               6703623 397 +   6883506 T

a score=823168.000000
s hg38.chr14_GL000009v2_random    198478 98 +    201709 TTTGCTAATTTTGGCAAAGTACTTTAACAAAAGTTAAAT-TAAATGAGTAAGTGAAATTTTCTGTTCTATTGTTTTG--AAAACAATTCTAGAAACTCTCC
s panTro5.chr9                  41888282 98 + 116767853 TTTGCTAATTTTGGCAAAGTACTTTAACAAAAGTTAAAT-TAAGTGAGTAAGTGAAATTTTCTGTTCTATTGTTTTG--AAAACAATTCTGGAAACTGTCC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854117 98 + 205426864 TTTGCTAATTTTGGCAAAGTACATTAACAAAAGTTAAAT-TAAGTGAGTAAGTGAAATTTTCTTTTCTATTGTTTTG--AAAACAATTCTAGAAACTGTCC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13808 98 +  12760026 TTTGCTAATTTTGGCAAAGTACATTAACAAAAGTTAAAT-TAAGTGAGTAAGTGAAATTTTCTTTTCTATTGTTTTG--AAAACAATTCTAGAAACTGTCC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127189 89 -  86207423 TTTGCTAATTTTGGCAAAGTACATTAACAAAAATCA----------AGTAAGTGAAATTTTCTCTTCTATTGTTTTG--AAAACAATTCTAGAAACTGTCC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204283217 94 - 204787373 TTTGCTAATTTTGGCACAGTACATTAACAAAAGTTAAAT-TA----AGTAAGTGAAATGTTCTGTTCTATTGTTTTG--AAAACAATTCTAGAAGCTGTCC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182403 94 - 192460366 TTTGCTAATTTTGGCACAGTACATTAACAAAAGTTAAAT-TC----AGTAAGTGAAATTTTCTGTTCTATTGTTTTG--AAAACAATTCTAGAAAGTGTCC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          201851 94 -  11645122 TTTGCTAATTTTGGCACAGTACATTAACAAAAGTTAAAT-TA----AGTAAGTGAAATTTTCTGTTCTATTGTTTTG--AAAACAATTCTAGAAAGTGTCC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          187000 98 -   6739814 TTTGCTAATTTTGGCAAAGTACATTAACAAAAGTTAAAT-TAAGTGAGTAAGTGAAATTTTCTGTTCTATTGTTTTG--AAAACAATTCTAGAAAGTGTCC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    77748 98 - 101219884 TTTGCTAATTTTGGCAAGGTACATTAACAAAAGTTAAAT-TAAGTGAGTAAGTGAAATTTTCTGTTCTTTTGTTTTG--AAAACAATTCTAGAAAGTGCCC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199180 98 -    785044 TTTGCTAATTTTGGCAAAGTACATTAACAAAAGTTAAAT-TAAGTGAGTAAGTGAAATTTTCTGTTCTATTGTTTTG--AAAACAATTCTAGAAAGTGTCC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           90768 98 -  10971483 TTTGCTAATTTTGGCAAAGTACATTAACAAAAGTTAAAT-TAAGTGAGTAAGTGAAATTTTCTGTTCTATTGTTTTG--AAAACAATTCTAGAAAGTGTCC
i colAng1.NW_012123820v1       I 6725 C 0
s saiBol1.JH378168              10943076 76 -  13128814 ---------------TAAGTACATTAACGAAAGTTAAAT---------TAAGTGAAATTTTCTGTTCTATTGTTATGAAAAAACAATTCTA-AAACTGTCC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674171 80 +  14377064 ---------------TAAGTACATTAACAAAAGTTAAAT-TA----AGTAAGTGAAATTTTCTCTTCTATTGTTATGAAAAAACAATTCTA-AAACTGTCC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141876 76 -   9889416 ---------------TAAGTACATTCACAAAAGTTAAAT---------TAAGTGAAATTTTTTGTTCTATTTTTAAGAAAAAACAATTCTA-AAACTGTCC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893056 92 -  47401472 TTTGCTAATTTTGTC-AAGTACATAAAAAAAACT------TAAATGAATTCCTGAAATTTTCTGCTCTATTATTATA--AAAAAAATTCTAGAAGTTGTCC
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20772970 95 +  38779656 TTTGTTGATTTTGTC-AAGGACACAGACAAAAGTAAAAC-TAAGTGAATACCTGAAATTTTCTGCTCTGTTAT--AA--AAAGAAACTCTAAAAGTTGTCC
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22720116 89 -  98207768 TTTGCTATCTTTTCCAGATTATAAATACCAAAGTTAAATATA------TATCTGAAAAAATATGCTTTATTTTTATT--AAGATAAGTCCC----TTCAGC
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28809931 93 -  39895921 TTTGATGATTTTGTCAAAATACAAAATTGTAAGTTAAAT-TTAGTGAATATCTGAA--TTTCTGACCTATTGTTATA--AAAAA---TCTAAATGTTATTT
i canFam3.chr31                C 0 C 0
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I
e dasNov3.JH568778               6703623 397 +   6883506 T

a score=427529.000000
s hg38.chr14_GL000009v2_random    198576 37 +    201709 TTGTAAG----AACAGCAAAAAGAGAAAA--AGATA-------A--TTCTCA
s panTro5.chr9                  41888380 37 + 116767853 TTGTAAG----AACAGCAAAAAGAGAAAT--AGATA-------A--TTCTCA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854215 37 + 205426864 TTGTAAG----AACAGCAAAAAGAGAAAA--AGGTA-------A--TTCTCA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13906 37 +  12760026 TTGTAAG----AACAGCAAAACAAGAAAA--AGGTA-------A--TTCTCA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127278 37 -  86207423 TTGTAAG----AACAGCAAAAAGAGAAAA--AGATA-------A--TTCTCA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204283311 37 - 204787373 TTGTAAG----AACAGCAAAAAGAGAAAA--AGATA-------A--TTCTCA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182497 37 - 192460366 TTGTAAG----AACAGCAAAAAGAGAAAA--GGATA-------A--TTCTCA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          201945 37 -  11645122 TTGTAAG----AACAGCAAAAAGAGAAAA--GGATA-------A--TTCTCA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          187098 37 -   6739814 TTGTAAG----AACAGCAAAAAGAGAAAA--AGATA-------A--TTCTCA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    77846 37 - 101219884 TTGTAAG----AACAGCAAAAAGAGAAAA--AGATA-------A--TTCTCA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199278 39 -    785044 TTGTAAG----GACAGCAAAAAGAGAAAA--AGATA-------ATTTTCTCA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           90866 37 -  10971483 TTGTAAG----AACAGCAAAAAGAGAAAA--AGATA-------A--TTCTCA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10943152 35 -  13128814 TTGTAAG----AACATCAAAAAGAGAAA----GATA-------A--TTCTCA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674251 37 +  14377064 TTGTAAG----AACATTAACAAGAGAAAA--GGATA-------A--TTCTCA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141952 37 -   9889416 TTGTAAG----AACATCAAAAAGAGAAAA--AGATA-------A--TTCTCA
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893148 37 -  47401472 TTGTAAG----AATAGCAAAAAGATAAAA--AGATA-------A--TTCTCA
i micMur3.chr31                C 0 I 57
s otoGar3.GL873528              20773065 39 +  38779656 TTGCAAG----AAAAACAGGAAGAGAAAAAGAGAGA-------A--TTCTCA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22720205 34 -  98207768 TTTTAGC----AATTCCAAAAAGAGAAAA-----TA-------T--TTTCTA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28810024 40 -  39895921 TGTTAAA----AA----AAAGTGAGAAGA--ACTTATTCTTTGA--TTCTCA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703226 41 +   6883506 TTGTAAAGGATAGTAATAAGAAGAGAAGA--ATATG-------A--TTCTTA
i dasNov3.JH568778             T 397 C 0
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I

a score=534248.000000
s hg38.chr14_GL000009v2_random    198613 56 +    201709 ACTGCTGCTTCAACCATT-----CTTTGCTTAACAAT-TAGT-----TAATTAAAAGGCAAAA--CTCT
s panTro5.chr9                  41888417 59 + 116767853 ACTGCAGCTTCAACCATT-----CTTTGCGTAACAATGTATC-----TAATTAAAAGGCAAAACTCTCT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854252 59 + 205426864 ACTGTTGCTTCAACCATT-----CTTTGCTTAACAATGTATC-----TAATTAAAAGGCAGAACTCTCT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           13943 59 +  12760026 ACTGTTGCTTCAACCATT-----CTTTGCTTAACAGTGTATC-----TAATTAAAAGGCAGAACTCTCT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127315 58 -  86207423 ACTGCTGCTTCAACCATT-----CTTTGCTTAACAACGTATC-----CAATTAAAAGGCAAAACTCTC-
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204283348 59 - 204787373 ACTGCTGCTTCAACCATT-----CTTTGCTTAACAATGAATC-----TAATTAAAAGGCAAAACTCTCT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182534 57 - 192460366 ATTGCAGCTTCAACCATT-----CTTTGCTTAACAATGTATC-----TAATTAAAAGGCAAAA--CTCT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          201982 57 -  11645122 ATTGCAGCTTCAACCATT-----CTTTGCTTAACAATGTATC-----TAATTAAAAGGCAAAA--CTCT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          187135 59 -   6739814 ATTGCAGTTTCAACCATT-----CTTTGCTTAACAATGTATC-----TAAATAAAAGGCAAAACTCTCT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    77883 59 - 101219884 ATTGCAGTTTCAACCATT-----CTTTGCTTAACAATGTATC-----TAAGTAAAAGGCAAAACTCTCT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199317 59 -    785044 ATTGCAGTTTCAACCATT-----CTTTGCTTAACAATGTATC-----TAAATAAAAGGCAAAACTCTCT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           90903 59 -  10971483 ATTGCAGTTTCAACCATT-----CTTTGCTTAACAATGTATC-----TAATTAAAAGGCAAAACTCTCT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10943187 59 -  13128814 ATTGCTGCGTCAACCATT-----CTTTGCTTAATAGTGTATC-----TAATTAAAAGGAAAAACTCTCT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674288 59 +  14377064 ATTGCTGCTTCAACTATT-----CTTTGCTTACCAGTGTATC-----TAATTAAAAGGCAAAACTCTCT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4141989 59 -   9889416 ATTGCTGCTTCAACCATT-----CTTTGCTTAACAATGTATC-----TAATTAAAAGGCAAAACTCTCT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20773104 56 +  38779656 ATTGCCATTTCAAAATTT-----CTTTGCCTG-TAGTGTAGA-----TGATTAAAAGGGACAATTCT--
i otoGar3.GL873528             C 0 I 2
s mm10.chr16                    22720239 33 -  98207768 -------------------------------TATGATGTATA-----TAATTACAAGACAAAATGTATT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28810064 62 -  39895921 GTTGCTGCTTCAATGATTTGTGGCTTCTTTTTATAGTTTACC-----TAATTAAAAGGCAGAATTCC--
i canFam3.chr31                C 0 I 2
s dasNov3.JH568778               6703267 57 +   6883506 ATTGTTGCT----ATATT-----CTTAGCCTA-TAGTGTATCTATTATAATTAAAAGGCAAAAATAT--
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30893185 57 -  47401472 I
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I

a score=1736610.000000
s hg38.chr14_GL000009v2_random    198669 134 +    201709 ATTTCAGG-TTTATATGTGTCAATTGCTTGATTAGAAAGTAAATTATTTACCACATATAATCTGGTGTCAAAAAACTTATA-----------ATAAAATTAC-TTTGATTTTATTGCTTATAAGTTTGTGAATTTAAATCTCAACTT
s panTro5.chr9                  41888476 134 + 116767853 ATTTCAGG-TTTATATGTATCAATTGCTTGATTAGAAAGTAAATTATTTACCCCATATAATCTGGTGTCAAAAAACTTACA-----------ATAAAATTAC-TTTGATTTTATTGCTTATAAGTTTGTGAATTTAAATCTCAACTG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854311 134 + 205426864 ATTTCAGG-TTTATATGTATCAATTGCTTGATTAGAAAGTAAATTATCTACCCCATATAATCTGGTGTCAAAAAACTTATA-----------ATAAAATTAC-TTTGATTTTATTGCTGATAAGTTTGTGAATTTAAATCTCAACTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           14002 134 +  12760026 ATTTCAGG-TTTATATGTATCAATTGCTTGATTAGAAAGTAAATTACCTACCCCACATAATCTGGTGTCAAAAAACTTATA-----------ATAAAATTAC-TTTGATTTTATTGCTGATAAGTTTGTGAATTTAAATCTCAACTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127373 134 -  86207423 ATTTCAGG-TTTATATGTATCAATTGCTTAATTAGAAAGTAAATACTCCACCCCATATAATCTGGTGTCAAAAAACGTATA-----------ATAAAATTAC-TTTGATTTTGTTGCTGATAAGTTTGTGAATTTAAATCTCAACTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204283407 134 - 204787373 ATTTCAAG-TTTATATGTGTCAATTGCTTGATTAGAAAGTAAATTCTCTACCCCATATAATCTGGTGTCAAAAAACTTATA-----------ATACAATTAC-TTTGATTTTATTGCTGGTAAGTTTGTGAATTTAAATCTCAACTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182591 134 - 192460366 ATTTCAGG-TTTATACATATCAATTGCTTGATTAGAAAGTAAATTCTCTACCCCATATAATCTGGTGTCAAAAAACTTATA-----------ATACAATTAC-TTTGATTTTATTGCTGGTAAGTTTGTGAATTTAAATCTCAACTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          202039 134 -  11645122 ATTTCAGG-TTTATACATATCAATTGCTTGATTAGAAAGTAAATTCTCTACCCCATATAATCTGGTGTCAAAAAACTTATA-----------ATACAATTAC-TTTGATTTTATTGCTGGTAAGTTTGTGAATTTAAATCTCAACTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          187194 134 -   6739814 ATTTCAGG-TTTATACATATCAATTGCTTGATTAGAAAGTAAATTCTCTACCCCATATAATCTGGTGTCAAAAAACTTATA-----------ATAAAATTAC-TTTGATTTTATTGCTGGTGAGTTTGTGAATTTAAATCTCAACTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    77942 134 - 101219884 ATTTCAGG-TTTATACGTATCAATTGCTTGATTAGAAAGTAAATTCTATACCCCATATAATCTGGTGTCAAAAAACTTATA-----------ATAAAATTAC-TTTGATTTTATTGCTGGTAAGTTTGTGAATTTAAATCTCAACTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199376 134 -    785044 ATTTCAGG-TTTATATGTATCAATTGCTTGATTAGAAAGTAAATTCTCTACCCCATATAATCTGGTGTCAAAAAACTTATA-----------ATAAAATTAC-TTTGATTTTATTGCTGGTGAGTTTGTGAATTTAAATCTCAGCTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           90962 134 -  10971483 ATTTCAGG-TTTATACGTATCAATTGCTTGATTAGAAAGTAAATTTTCTACCCCATATAATCTCGTGTCAAAAAACTTATA-----------ATAAAATTAC-TTTGATTTTATTGCTGGTAAGTTTGTGAATTTAAATCTCAACTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10943246 118 -  13128814 GTTTCAGG-TTTATATGTATCAATTGCTTGATTAGAAAGTAAGT----------------TCTGCTATCAAAAATCTTACA-----------ATAAAATTAC-TTAGATTTTATTGCTGATAAGTTTGTGAATTTAAATCTCAACTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674347 134 +  14377064 GTTTCAGG-TTTATATGTATCAATTGCTTGATTAGAAAGTAAGTTCTCTACCCCATATAATCTGCCATCAAAAAACTTATA-----------ATAAAATTAC-TTAGATTTTATTGCTGGTAAGTTTGTGAATTTAAATCTCAAGTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4142048 134 -   9889416 GTTTCAGG-TTTATATGTATCAATTGCTTGATTAGAAAGGAAATTCTCTACCCCATATAATCTGCTATCAAAAAACGTGTA-----------ATAAAATTAC-TTAGATTTTATTGCTGATAAGTTTGTGAATTTAAATCTCAGCTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893242 134 -  47401472 ATTTCAGT-TTTATATGCATCAATTGCCTGATTAGAAAGTAAATTCTCTATACCATATAATCTTGTGTCAAGAAACTTGTA-----------AAAAAAATAC-TTTAATTTTATTGCTGATAAGTTTGCAAATTTAAATCTCAACTT
i micMur3.chr31                I 57 C 0
s otoGar3.GL873528              20773162 125 +  38779656 ATTTCAGT-TGTATAGACATCATTTGCCTGATCAGAAAGTAAATTCTCTGTCTCGT----TCTGGTATCAAGAAACTTGTA-----------CAAAAA------TTAATTTTATTGCTGATAAGTTTGCAAATTTAAAACTCAACTA
i otoGar3.GL873528             I 2 C 0
s mm10.chr16                    22720272 131 -  98207768 ATTTCAAT-TTTAAACGTACCAGTTGCCTGATGATAAGGCAGATTCTTCAGGTCATATAATCTTGTGTTAATAAACTTGTG-------------AAAATTAC-TCTAATTTTA-CACAGATAAGTCTGAGACTCCAAATTCCAGCAT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28810128 146 -  39895921 ATTTCAAGTTTTATATGCATCAATTGCCTGATTGGAAAGTAAATTCTCAAACCCATATAATCTGGAGTCAAGAAACTTGTAAAACAAAACAAAAAAAATCAC-TTTAATTTCATTGCTGACAAGTTTGCGAATTTAAATCTCAACTT
i canFam3.chr31                I 2 C 0
s dasNov3.JH568778               6703324 133 +   6883506 CTTCCTGT-TCAACATCTATCAATTGCCTGGTTAGAAATTAAATTCTCTAGTTCATAAAATCTAGAGTCAAGAAACTTATT-----------TTAAAAAAACACTTGATTTT--CATCAATAAGTTTGTGAATTTAAATCTCAACTT
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1           98576 1147 +   1229009 I

a score=15378.000000
s hg38.chr14_GL000009v2_random    198803 4 +    201709 ACAG
s panTro5.chr9                  41888610 4 + 116767853 ACAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854445 2 + 205426864 TC--
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           14136 2 +  12760026 TC--
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127507 4 -  86207423 ATAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204283541 4 - 204787373 ACAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182725 4 - 192460366 ACAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          202173 4 -  11645122 ACAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          187328 4 -   6739814 ACAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    78076 4 - 101219884 ACAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199510 4 -    785044 ACAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           91096 4 -  10971483 ACAG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10943364 4 -  13128814 AAAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674481 4 +  14377064 ACAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4142182 4 -   9889416 ACAG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893376 4 -  47401472 ACTG
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1           99723 4 +   1229009 ACTG
i eulFla1.LGHW01000695v1       I 1147 I 407
s otoGar3.GL873528              20773287 4 +  38779656 ACTG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22720403 4 -  98207768 ACTA
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28810274 4 -  39895921 CCTG
i canFam3.chr31                C 0 C 0
e dasNov3.JH568778               6703457 0 +   6883506 C

a score=6116563.000000
s hg38.chr14_GL000009v2_random    198807 406 +    201709 TGATGAATTTATTTGCTTTGTGCTGACAAGACAGTATCTTGAAGTTTTGTTTTCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGGACATAAATGGTATCTTCACAAAGATACATTCATTCTGGTACTGAAAGTGCCCACCTAAAATTCTGCATGAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGATTTAGAACAAATTCTTACAAGAAGCATAGCATGTCTTCCATTAACTGTATACAATTT-TAAAAAGTTACTGAAAGTCTTCCTGAAGTTAAACAATAAATC-TTTAAATTTAACCACTGTGCTCCCTCAAAGGTAA-TTTT--TT---CTTT-------ATGACACTCACTTAGGGGATACAGTCAG
s panTro5.chr9                  41888614 408 + 116767853 TGATGAATTTATTTGCTTTGTGCTGACAAGACAATATGTTGAAGTTTTGTTTTCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTACATAAATGGTATCTTCACAAAGATATATTCATTCTGGTACTGAAAGTGCATACTTAAAATTCTTCATGAACCG-TTTTATTGAAAAAATATGTAGACAAACCATTAATTATACACAGTGATCTGGAACAATTTCTTACAAGAAGCATAGCATGTCTTCCATTAACTGTATACAATTTATAAAAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTTAACCACTGTGCTCCCTCAAAGGTAA-TTTT--TT---CTTT-------ATGACACTCACTTAGGGGATACAGTCAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854447 405 + 205426864 --ATGAATTTATTTGCTTTGTGCTGACAAGACAGTATCCTGAAGTTTTGTTTTCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTTATTATGCTTTGGATGTTATGGTACATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAGTGCCTACTTAAAATTCTGCACGAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTACAAGAAGCATAGCATGTCTTCCATTAAATGTATACATTTTATAAGAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTTAACCACTGTGCTCCCTCAAAGGTAA-TTTT--TT---CTTT-------ATGACACTCACTTAGGGCATACAGTCA-
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           14138 405 +  12760026 --ATGAATTTATTTGCTTTGTGCTGACAAGACAGTATCCTGAAGTTTTGCTTTCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTTATTATGCTTTGGACGTTATGGTACATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAGTGCCTACTTAAAATTCTGCATGAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTATAAGAAGCATAGCATGTCTTCCATTAAATGTATACATTTTATAAGAAGTTACTGTAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTTAACCACCGTGCTCCCTCAAAGGTAA-TTTT--TT---CTTT-------ATGACACTCACTTAGGGCATACAGTCA-
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127511 405 -  86207423 TGATGAATTTATTTGCTTTGTGCTGACAAGCCAGTATCTTGAAGTTTTGTTTTCCAACTCAGTTCTAAATCTGGAGTGTATCAAAATCTCCTCGCTATGCTTTGGATGTTATGCTACATAAATGGCATTTTCACAAAGATACATTCATTCTGGTATTGAAAGTGCCTACTTAAAATTCTGCACGAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTT---AGAAGCATAGCTTGTCTTCCATTAAATGTATACATTTTATAAAAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTTAATCACTGTGCTACCTCAAAGGTAA-TTTT--TT---CTTT-------AGGACACTCACTTAGGGCATACGGTCAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204283545 407 - 204787373 TGATGAATTTATTTGCTTTGTGCTGACAAGACAGTATCTTGAAGCTTTGTTTTCCATCTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAGCGCCTACTTAAAATTCTGCACGAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTATAAGAAGCATGGCATGTCTTCCATTAAATGTATACATTTTATAAAAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTTAACCACTGTGCTCCCTCAAAGGTAA-TTTT--TT---C-TT-------ATGACACTCACTCAGAGCATACAGTCAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    182729 407 - 192460366 TGATGAATTTATTTGCTTTGTGCTGACAAGACAGTATCTTGAAGCTTTGTTTTCCATCTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAGTGCCTACTTAAAATTCTGCACGAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTATAAGAAGCATGGCATGTCTTCCATTAAATGTATACATTTTATAAAAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTTAACCACTGTGCTCCCTCAAAGGTAA-TTTT--TT---C-TT-------ATGACACTCACTCAGAGCATACAGTCAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          202177 407 -  11645122 TGATGAATTTATTTGCTTTGTGCTGACAAGACAGTATCTTGAAGCTTTGTTTTCCATCTCAGTTCTAAATCTGCAGTGTAGCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAGTGCCTACTTAAAATTCTGCACGAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTATAAGAAGCATGGCATGTCTTCCATTAAATGTATACATTTTATAAAAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTTAACCACTGTGCTCCCTCAAAGGTAA-TTTT--TT---C-TT-------ATGACACTCACTCAGAGCATACAGTCAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          187332 408 -   6739814 TGATGAATTTATTTGCCTTGTGCTGACAAGACAGTATCTTGAAGCTTTGTTTTCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTTCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAGTGCCTACTTAAAATTCTGCACGAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTATAAGAAGCATGGCATGTCTTCCATTAAATGTATACATTTTATAAAAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTTAACCACTGTGCTTCCTCAAAGGTAA-TTTT--TT---CTTT-------ATGACACTCACTCAGAGCATACAGTCAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    78080 408 - 101219884 TGATGAATTTATTTGCTTTGTGCTGACAAGACAGTATCTTGAAGCTTTGTTTTCCATCTCAGTTCTAAATCTGCAGTATATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAGTGCCTACTTAAAATTCTGCATGAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTATAAGAAGCATGGCATGTCTTCCATTAAATGTATACATTTTATAAAAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTTAACCACTGTGCTCCCTCAAAGGTAA-TTTT--TT---CTTT-------ATGACACTCACTCAGAGCATACAGTCAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199514 408 -    785044 TGATGAATTTATTTGCCTTGTGCTGACAGGACAGTATCTTGAAGCTTTGTTTTCCAACTCAGTTCTAAATCTGCAGTGTATCAAAATCTTCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTAACTTCACAAAGATACATTCATTCTGGTATTGAAAGTGCCTACTTAAAATTCTGCACGAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTATAAGAAGCCTGGCATGTCTTCCATTAAATGTATACATTTTATAAAAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTTAACCACTGTGCTTCCTCAAAGGTAA-TTTT--TT---CTTT-------ATGACACTCACTCAGAGCATACAGTCAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           91100 408 -  10971483 TGATGAATTCATTTGCTTTGTGCTGACAAGACAGTATCTTGAAGCTTTGTTTTCCATCTCAGTTCTAAATCTGCAGTGTATCAAAATCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAGTGCCTACTTAAAATTCTGCACAAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTTTAAGAAGCATGGCATGTCTTCCATTAAATGTATACATTTTATAAAAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTTAAATTTAACCACTGTGCTCCCTCAAAGGTAA-TTTT--TT---CTTT-------ATGACACTCACTTAGGGCATACAGTCAG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10943368 410 -  13128814 TGATGAATTTATTTGCTTTGTACTGACAAGACAGTATCTTGAAGCTTTGTTTTCCAACTCAGTTCTGAATCTGCAGGGTATCAAAATCTCCTCATTATGCTTGGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAATGCCTACTTAAAATTCTACACGAACAGTTTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACAGAGTGACTTGGAACAAATTCTTATAAGAAGTATAGCATGCCTTCCATTAAATATATACATTTTATAAAAAGTTACTGAAAGTCTCCCTGAGGTGAAACAATCAATCTTTTAAATTTAACCACTGTGCTCCCTCAAAGAGAATTTTT--TT---CTTT-------ATGACACTCACTTAGGGCATACAGTCAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674485 408 +  14377064 TGATGAATTTATTTGCCTTGTACTGACAAGACAGTATCTTGAAGCTTGGTTTTCCAACTCAGTTCTAAATCTGCAGGGTATCAAAATCTCCTCATTATGCTTTGGATGTTTTGGTAGATAAATGATATCTTCACAAAGATACATTCATTCTGGTATTGAAAATGCCTACTTAAAATTCTGCACGAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACAGAGTGACTTGGAACAAATTCTTATAAGAAGCATAGCATGCCTTCCATTAAATGTATACATTTTATAAAAAGTTACTGAAAGTCTCCCTGAGGTGAAACAATCAATCTTTTAAATTTAACCACTGTGCTCCCTCAAAGAGAA-GTTT--TT---CTTT-------ATGACACTCACTTAGGGCATACAGTCAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4142186 407 -   9889416 TGATGAATTTATTTGCTTTGTACTGACAAGACAGTATCTTGAAGCTTTGTTTTCCAACTCAGTTCTAAATCTGCAGTGTATCAAAGTCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAATGCCTACTTAAAATTCTGCACGAACAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTATAAGAAGCATAGCATGCCTTCCATTAAATATATGCA-TTTATAAAAAGTTACTGAAAGTCTTCCTGAGGTGAAACAATCAATCTTTTAAATTTAACCACTGTGATCCTTCAAAGAGAA-TTTT--TT---CTTT-------ATGACACGCACATAGGACATACAGTCAG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893380 409 -  47401472 TGATGAATTTATTTAGTTTGTGCTGACAAGACAGTATTGTGAAGCTTTGTTTTCCAACTCAGTTCTAAATCTGCAGTGTATCAAAGTCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATTGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAGTGCCTACTTAAAATTCTGCACGAATAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTACACACAGTGACTTGGAACAAATTCTTATAAGAAGCATAGCATGCCTTCCATTAAATATACACATTTTATACAAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTGAAACTTAATCACTGTGCTCCCCCAAAGGTGA-TTTTT-TT---TCCT-------ATGACACACACATAGGACATACAATCAG
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20773291 409 +  38779656 TGATGAATGTG-TTACTTTGTGCTGACATGACAGTATCGGGAGGCTTTGTTTTCCAACTCAGTTCTGAATCTGCAGTGAATCCAAGTCTCTTCATTATGCTTGGTATGTTACGGTAGATAAATGCTGTCTTCACAAAGATACATTCGCTCTGGTATTGAAAGTGCCTGCTTAAAATTCTGTACGAATAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAAATTCTTATGAGACGCATAGCATGCCTTCCATTAAATATATACATTTTGTACAAAGTTACAGAAAGTCTTCCTGAGGTTAAACAATAAATCTTTGAAACTTAATCCCTGTGCTACCCCAAAGGGGA-TTGTGATT---TTCT-------GTGACACACACATAGGACATATGGTTAG
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22720407 403 -  98207768 TGATGACTTTATTCACATTGTGCTGACAAGACAGTCTCTTATAGCTTTGTATTCCAGTTCCGTTCTAAATCTGTGGAGTATCAAAGTCTAGCCATTATGCTTTGGGTGTTATAGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGCTATTGAAAATGCCTACTTAAAATTCAGCACGAATAG-TTTTTTTTGAAAAATATGTAGACAAGCCATTAATTATACACAGTGACTTGGAACAGATTCTTATAAGAAGCATCGTGTGCCTTCCATTAAATGTATACATTTTATACGAAGTTACTGAAAGTCTTCCTGAGGTTAAGCCATAAATCTTACAAATGTAACTGCTAGGC-CCCAGAGAGGTAA-TTTT--TTTC-CCCT-------ATGACACACACTAAAGGCAAGC------
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28810278 409 -  39895921 TGATGAATTTATTTACTTTGTGCTGACAAGACAGTATCTTGGGGCTTTGTTTTCCAAGTCAGTTCTAAATCTGCAGTGTATCAAAGTCTCCTCATTATGCTTTGGATGTTATGGTAGATAAATGGTATCTTCACAAAGATACATTCATTCTGGTATTGAAAATGCCTACTTAACATTCTGTATGAATAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATACACAAAGACTTGGAACAAATTCTTATAAGAAGCATAGCATGCCTTCCATTAAATGTACACATTTTGTACAAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTGCAAATTTAATCACTCTGCTCCCCAAAAGGTAA-TTTT--TTTCTCTCT-------ATGACACACA--TAGGGCATACACTCAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703457 412 +   6883506 TGA-AAATTTATTTACTTTTTGCTGACAGCGCAGTATCTTGGAGCTTTGTTTTCCAACCTAGTTCTAAATCTGCAGTGTATCAAAGTCTCCTCATTATGCTTCGGATGTTATAGTAGATAAATGGAATCTTCACAAAGATACATTCATTATGGTATTGAAAGTGCCTACTTAACATTCTGCATGAATAG-TTTTATTGAAAAAATATGTAGACAAGCCATTAATTATAC--AGTGACTGGGAACAAATTCTTATAAGAAGCATAGCACGCTTTCCATTAAGTACATACATTCCAAACAAAGTTACTGAAAGTCTTCCTGAGGTTAAACAATAAATCTTAGAACTTTAACCACTATGCTCCCCCGAAGGTAA-ATTT--TT---TTTCTCCTCTGACAACACATACATAGGGCATATATTCAT
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1           99727 407 +   1229009 I

a score=16670.000000
s hg38.chr14_GL000009v2_random    199213 1 +    201709 A
s panTro5.chr9                  41889022 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854852 1 + 205426864 A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           14543 1 +  12760026 A
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127916 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204283952 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183136 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          202584 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          187740 1 -   6739814 A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    78488 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199922 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           91508 1 -  10971483 A
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10943778 1 -  13128814 A
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674893 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4142593 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893789 1 -  47401472 A
i micMur3.chr31                C 0 C 0
s eulFla1.LGHW01000695v1          100134 1 +   1229009 A
i eulFla1.LGHW01000695v1       I 407 I 366
s otoGar3.GL873528              20773700 1 +  38779656 A
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22720810 1 -  98207768 G
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28810687 1 -  39895921 A
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703869 1 +   6883506 A
i dasNov3.JH568778             C 0 C 0

a score=151318.000000
s hg38.chr14_GL000009v2_random    199214 11 +    201709 TCTCAGCCTAC
s panTro5.chr9                  41889023 11 + 116767853 TCTCAGCCTAC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854853 11 + 205426864 TCTCAGCCTAC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           14544 11 +  12760026 TCTCAGCCTAC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127917 11 -  86207423 TTTCAGCCTAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204283953 11 - 204787373 TCTCAGCCTAC
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183137 11 - 192460366 TCTCAGCCTAC
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          202585 11 -  11645122 TCTCAGCCTAC
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          187741 11 -   6739814 TCTCAGCCTAC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    78489 11 - 101219884 TCTCAGCCTAC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199923 11 -    785044 TCTCAGCCTAC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           91509 11 -  10971483 TCTGAGCCTAC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10943779 11 -  13128814 TCTCAGCCTAC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674894 11 +  14377064 TCTCAGCCCAC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4142594 11 -   9889416 TCTCAGCCTAC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893790 11 -  47401472 TCTTAGTCTAG
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20773701 11 +  38779656 TGTTAGTCTAC
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22720811 11 -  98207768 TCTTAGCACAT
i mm10.chr16                   C 0 I 18
s canFam3.chr31                 28810688 11 -  39895921 TCTTAGCCTAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703870 11 +   6883506 TCTTAGCCTGG
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1          100135 366 +   1229009 I

a score=564247.000000
s hg38.chr14_GL000009v2_random    199225 44 +    201709 TTTAAACAACTAGGCAGTATTTTTAGTGCACTTTTCTGTTTGtt
s panTro5.chr9                  41889034 44 + 116767853 TTTAAACAACTAGGTAGTATTTTTAGTGCACTTTTCTGTTTGTT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854864 44 + 205426864 TTTAAACAACTAGGCAGTATTTTTAGTGCATTTTTCTGTTTGTT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           14555 44 +  12760026 TTTAAACAACTAGGCAGTATTTTTAGTGCATTTTTCTGTTTGTT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127928 44 -  86207423 TTTAAACAACTAGGCAGTATTTTTAGTGCATTTTTCTGTTTGTT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204283964 44 - 204787373 TTTAAACAACTGGGCAGTATTTTTAGTGCATTTTTCTGTTTGTT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183148 44 - 192460366 TTTAAACAACTGGGCAGTATTTTTAGTGTATTTTTCTGTTTGTT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          202596 44 -  11645122 TTTAAACAACTGGGCAGTATTTTTAGTGCATTTTTCTGTTTGTT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          187752 44 -   6739814 TTTAAACAACTAAGCAGTATTTTTAGTGCATTTTTCTGTTTGTT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    78500 44 - 101219884 TTTAAACAACTAAGCAGTATTTTTAGTGCATTTTTCTGTTTGTT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199934 44 -    785044 TTTAAACAACTAAGCAGTATTTTTAGTGCATTTTTCTGTTTGTT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           91520 44 -  10971483 TTTAAACAACTAGGCAGTATTTTTAGTGCATTTTTCTGTTTGTT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10943790 44 -  13128814 TTTAAACAACTAGGCAGTATTTTTAGTGCATTTTTCTGTTTGTT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674905 44 +  14377064 TTTAAACAACTAGGCAGTATTTTTAGTGCGTTTTTCTGTTTGTT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4142605 44 -   9889416 TTTAAACAAGTAGGCAGTATTTTTAGTGCATTTTTCTGTTTGTT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893801 44 -  47401472 TTTATAAAACTAGGCAGTATTTTCAGTGCATTTTTCTGTTTGTT
i micMur3.chr31                C 0 C 0
s mm10.chr16                    22720840 37 -  98207768 ACAAAAAGACTAGGGAGTATTTTGAATGCATTGTGTT-------
i mm10.chr16                   I 18 C 0
s canFam3.chr31                 28810699 44 -  39895921 TTTAAATAACCAGACGGTATTTTCAGCAGATTTTTCTGTTTCTT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703881 44 +   6883506 TTTAAATAACTAGACAGCATTTTTAGTCCATTGTTTTGCTTCTT
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1          100135 366 +   1229009 I
e otoGar3.GL873528              20773712  0 +  38779656 C

a score=2180.000000
s hg38.chr14_GL000009v2_random    199269 13 +    201709 aaaaagct----agttg
s micMur3.chr31                 30893845 13 -  47401472 AAAAATCT----AGTTG
i micMur3.chr31                C 0 I 5
s mm10.chr16                    22720877 17 -  98207768 AAAAATCTGATAAGTTG
i mm10.chr16                   C 0 C 0
e rheMac8.chr2                 204284008  0 - 204787373 C
e eulFla1.LGHW01000695v1          100135 366 +   1229009 I
e aotNan1.NW_018487195v1         4142649  0 -   9889416 C
e canFam3.chr31                 28810743  0 -  39895921 C
e otoGar3.GL873528              20773712  0 +  38779656 C
e colAng1.NW_012123820v1           91564  0 -  10971483 C
e dasNov3.JH568778               6703925  0 +   6883506 C
e cebCap1.NW_016107322v1         7674949  0 +  14377064 C
e saiBol1.JH378168              10943834  0 -  13128814 C
e manLeu1.NW_012099043v1          199978  0 -    785044 C
e chlSab2.chr22                    78544  0 - 101219884 C
e cerAty1.NW_012001605v1          187796  0 -   6739814 C
e macNem1.NW_012010856v1          202640  0 -  11645122 C
e macFas5.chr2                    183192  0 - 192460366 C
e nomLeu3.chr21                 42127972  0 -  86207423 C
e panPan2.chr3                  77854908  0 + 205426864 C
e gorGor5.CYUI01015020v1           14599  0 +  12760026 C
e panTro5.chr9                  41889078  0 + 116767853 C

a score=91.000000
s hg38.chr14_GL000009v2_random    199282 1 +    201709 t
s mm10.chr16                    22720894 1 -  98207768 T
i mm10.chr16                   C 0 C 0
e micMur3.chr31                 30893858 5 -  47401472 I
e rheMac8.chr2                 204284008 0 - 204787373 C
e eulFla1.LGHW01000695v1          100135 366 +   1229009 I
e aotNan1.NW_018487195v1         4142649 0 -   9889416 C
e canFam3.chr31                 28810743 0 -  39895921 C
e otoGar3.GL873528              20773712 0 +  38779656 C
e colAng1.NW_012123820v1           91564 0 -  10971483 C
e dasNov3.JH568778               6703925 0 +   6883506 C
e cebCap1.NW_016107322v1         7674949 0 +  14377064 C
e saiBol1.JH378168              10943834 0 -  13128814 C
e manLeu1.NW_012099043v1          199978 0 -    785044 C
e chlSab2.chr22                    78544 0 - 101219884 C
e cerAty1.NW_012001605v1          187796 0 -   6739814 C
e macNem1.NW_012010856v1          202640 0 -  11645122 C
e macFas5.chr2                    183192 0 - 192460366 C
e nomLeu3.chr21                 42127972 0 -  86207423 C
e panPan2.chr3                  77854908 0 + 205426864 C
e gorGor5.CYUI01015020v1           14599 0 +  12760026 C
e panTro5.chr9                  41889078 0 + 116767853 C

a score=0.000000
s hg38.chr14_GL000009v2_random    199283 1519 +    201709  
e mm10.chr16                    22720895    0 -  98207768 C
e micMur3.chr31                 30893858    5 -  47401472 I
e rheMac8.chr2                 204284008    0 - 204787373 C
e eulFla1.LGHW01000695v1          100135  366 +   1229009 I
e aotNan1.NW_018487195v1         4142649    0 -   9889416 C
e canFam3.chr31                 28810743    0 -  39895921 C
e otoGar3.GL873528              20773712    0 +  38779656 C
e colAng1.NW_012123820v1           91564    0 -  10971483 C
e dasNov3.JH568778               6703925    0 +   6883506 C
e cebCap1.NW_016107322v1         7674949    0 +  14377064 C
e saiBol1.JH378168              10943834    0 -  13128814 C
e manLeu1.NW_012099043v1          199978    0 -    785044 C
e chlSab2.chr22                    78544    0 - 101219884 C
e cerAty1.NW_012001605v1          187796    0 -   6739814 C
e macNem1.NW_012010856v1          202640    0 -  11645122 C
e macFas5.chr2                    183192    0 - 192460366 C
e nomLeu3.chr21                 42127972    0 -  86207423 C
e panPan2.chr3                  77854908    0 + 205426864 C
e gorGor5.CYUI01015020v1           14599    0 +  12760026 C
e panTro5.chr9                  41889078    0 + 116767853 C

a score=728.000000
s hg38.chr14_GL000009v2_random    200802 8 +    201709 ttaaaaaa
s otoGar3.GL873528              20773712 8 +  38779656 TTAAAAAA
i otoGar3.GL873528             C 0 I 8
e mm10.chr16                    22720895 0 -  98207768 C
e micMur3.chr31                 30893858 5 -  47401472 I
e rheMac8.chr2                 204284008 0 - 204787373 C
e eulFla1.LGHW01000695v1          100135 366 +   1229009 I
e aotNan1.NW_018487195v1         4142649 0 -   9889416 C
e canFam3.chr31                 28810743 0 -  39895921 C
e colAng1.NW_012123820v1           91564 0 -  10971483 C
e dasNov3.JH568778               6703925 0 +   6883506 C
e cebCap1.NW_016107322v1         7674949 0 +  14377064 C
e saiBol1.JH378168              10943834 0 -  13128814 C
e manLeu1.NW_012099043v1          199978 0 -    785044 C
e chlSab2.chr22                    78544 0 - 101219884 C
e cerAty1.NW_012001605v1          187796 0 -   6739814 C
e macNem1.NW_012010856v1          202640 0 -  11645122 C
e macFas5.chr2                    183192 0 - 192460366 C
e nomLeu3.chr21                 42127972 0 -  86207423 C
e panPan2.chr3                  77854908 0 + 205426864 C
e gorGor5.CYUI01015020v1           14599 0 +  12760026 C
e panTro5.chr9                  41889078 0 + 116767853 C

a score=220179.000000
s hg38.chr14_GL000009v2_random    200810 18 +    201709 aaaaaGCTAGTTGTCAAG
s panTro5.chr9                  41889078 18 + 116767853 AAAAAGCTAGTTGTCAAG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854908 18 + 205426864 AAAAAGCTAGTTGTTGAG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           14599 18 +  12760026 AAAAAGCTAGTTGTTGAG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127972 18 -  86207423 AAAAAGCTAGTTGTTGAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284008 18 - 204787373 AAAAAGCTAGTTGTTGAG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183192 18 - 192460366 AAAAAGCTAGTTGTTGAG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          202640 18 -  11645122 AAAAAGCTAGTTGTTGAG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          187796 18 -   6739814 AAAAAGCTAGTTGTTGAG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    78544 18 - 101219884 AAAAAGCTAGTTGTTGAG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199978 18 -    785044 AAAAAGCTAGTTGTTGAG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           91564 18 -  10971483 AAAAAGCTAGTTGTTGAG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10943834 18 -  13128814 AAAAAGCTAGTTGTTGAG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674949 18 +  14377064 AAAAAGCTAGTTGTTGAG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4142649 18 -   9889416 AAAAAGCTAGTTGTTGAG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20773728 18 +  38779656 AAGAATCTAGTTGCTGGA
i otoGar3.GL873528             I 8 C 0
s canFam3.chr31                 28810743 18 -  39895921 AAAAATCTATTTGCTGAG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703925 18 +   6883506 AAAAATCCAGTTGCTTAG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22720895  0 -  98207768 C
e micMur3.chr31                 30893858  5 -  47401472 I
e eulFla1.LGHW01000695v1          100135 366 +   1229009 I

a score=132330.000000
s hg38.chr14_GL000009v2_random    200828 10 +    201709 AATAAGTTGC
s panTro5.chr9                  41889096 10 + 116767853 AATAAGTTGC
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854926 10 + 205426864 AATAAGTTGC
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           14617 10 +  12760026 AATAAGTTGC
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42127990 10 -  86207423 AATAAGTTGC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284026 10 - 204787373 AATAAGTTGA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183210 10 - 192460366 AATAAGTTGA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          202658 10 -  11645122 AATAAGTTGA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          187814 10 -   6739814 AGTAAGTTGC
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    78562 10 - 101219884 AATAAGTTGC
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          199996 10 -    785044 AATAAGTTGC
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           91582 10 -  10971483 AATAAGTTGC
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10943852 10 -  13128814 AATAAGTTGC
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674967 10 +  14377064 AATAAGTTGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4142667 10 -   9889416 AATAAGTTGC
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893863 10 -  47401472 AATAAGTTGT
i micMur3.chr31                I 5 C 0
s otoGar3.GL873528              20773746 10 +  38779656 TGTAAGTTGT
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28810761 10 -  39895921 AGTAAGTTGT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703943 10 +   6883506 AATAAGTTGG
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22720895  0 -  98207768 C
e eulFla1.LGHW01000695v1          100135 366 +   1229009 I

a score=3598861.000000
s hg38.chr14_GL000009v2_random    200838 284 +    201709 TCAAATATCTTCCTCAATTACTttttattttgttttgtaattattattctattttggttttcctttaGAATTGTGAAATATCTTGAATCAGAAATTGCAGAGAATATATAAATGTGTAGGAATGTACTCTGCAATCAAACT--AGATCTCGAA--AGTGTTTTGTTGTAGTTTATACCTTGAATTCG-AAGGCCATTCTATACAAGGCACTTGAAAAATTTTCAAGCTCATATATTTCATAATAGTACAGAATTTATTGTTCTTTTATTTGCAAGGAGATAGACCAGAT
s panTro5.chr9                  41889106 284 + 116767853 TCAACTATCTTCCTCAATTACTttttattttgttttgtaattattattctattttggttttcctttaGAATTGTGGACTATCTTGAATCAGAAATTGCAGAGAATATATAAATAAGTAAGAATGCACTCTTCAATCAAACT--AGATCTCGAA--AGTGTTTTGTTGTAGTTTATACCTTGAATTCG-AAGGCCATTCTATACAAGGCACTTGAAAAATTTTCAAGCTCTTATATTTCATAATAGTACAGAATTTTTTGTTCCTTTATTTGCAAGGAGATAGACCAGAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77854936 285 + 205426864 TCAATTATCTTCCTCAATTACTTTTTGTTTTGTTTTGTAATTATTATCCTATTTTGGTTTTCCTTTAGAATTGTGAAATATCTTGAATCAGAAATTGCAGAGAATATATAAATGAGTAAGCATGCACTCTGCAATCAAACT--AGATCTCGAA--AGTGTTTTGTTGTAGTTTATACCTTGAATTCGAAAAGCCATTTTATACAAGGCACTTGAAAAATTTTCAAGCTCATATATTTCATAATAGTACAGAATTTATTATTCTTTTATTTGCAAGGAGATAGACCAGAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           14627 285 +  12760026 TCAATTATCTTCCTCAATTACTTTTTGTTTTGTTTTGTAATTATTATCCTATTTTGGTTTTCCTTTAGAACTGTGAAATATCTTGAATCAGAAATTGCAGAGAATGTATAAATGAGTAAGCATGCACTCTGCAATCAAACT--AGATCTCGAA--AGTGTTTTGTTGTAGTTTATACCTTGAATTCGAAATGCCATTTTATACAAGGCACTTGAAAAATTTTCAAGCTCATATATTTCATAATAGTACAGAATTTATTATTCTTTTATTTGCAAGGAGATAGACCAGAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128000 285 -  86207423 TCAATTATCTTCCTCAATTACTTCTTGTTTTGTTTTGTAATTATTATCCTATTTTGGTTTTCCTTTAGAATTGTGAAATATCTTGAATCAGAAATTGCAGAGAATATATAAATGAGTAAGCATGCACTCTGCAATCAAACT--AGATCTCGAA--AGTGTTTTGTTGTATTTTATACCTTGAATTCAAAGTGCCATTTTATACAAGGCACTTGAAAAATTTTCAAGCTCATCTATTTCATAATAGTACAAAATTTATTGTTCTTTTATTTGCAAGGAGATGGACCAGAT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284036 285 - 204787373 TCAATTATCTTCCTCAATTACTTTTTGTTTTGTTTTGTAATTATTCTCCTATTTTGGTTTTCCTTTAGAATTGTGAAGTGTCTTCAATCAGAAATTGCAGAGAATATACAAATGAATAAGAATACGCTCTGCAATCAAACT--AGATCTAGAA--AGTGTTTTGTTGTAGTTTATACCTTGAATCCAAAGTGCCATTTTATACAAGGCACTTGAGACATTTTCAAGTTCATATATTTAATAATAGTACAGAATTTATTGTTCTTTTATTTGCAAGGAGATAGACCAGAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183220 285 - 192460366 TCAATTATCTTCCTCAATTACTTTTTGTTTTGTTTTGTAATTATTCTCCTATTTTGGTTTTCCTTTAGAATTGTGAAGTGTCTTCAATCAGAAATTGCAGAGAATATACAAATGAATAAGAATACGCTCTGCAATCAAACT--AGATCTAGAA--AGTGTTTTGTTGTAGTTTATACCTTGAATCCAAAGTGCCATTTTATACAAGGCACTTGAGACATTTTCAAGTTCATATATTTAATAATAGTACAGAATTTATTGTTCTTTTATTTGCAAGGAGATAGACCAGAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          202668 285 -  11645122 TCAATTATCTTCCTCAATTACTTTTTGTTTTGTTTTGTAATTATTCTCCTATTTTGGTTTTCCTTTAGAATTGTGAAGTGTCTTCAATCAGAAATTGCAGAGAATATACAAATGAATAAGAATACGCTCTGCAATCAAACT--AGATCTAGAA--AGTGTTTTGTTGTAGTTTATACCTTGAATCCAAAGTGCCATTTTATACAAGGCACTTGAGACATTTTCAAGTTCATATATTTAATAATAGTACAGAATTTATTGTTCTTTTATTTGCAAGGAGATAGACCAGAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          187824 285 -   6739814 TCAATTATCTTCCTCAATTACTTTTTGTTTTGTTTTGTAATTATTATCCTATTTTGGTTTTCCTTTAGAATTGTGAAGTGTCTTCAATCAGAAATTGCAGAGAATATACAAATGAATAGGAATACACTCTGCAATCAAACT--AGATCTAGAA--AGTGTTTTGTTGTAGTTTATACCTTGAATCCAAAGTGCCATTTTATACAAGGCACTTGAGACATTTTCAAGCTCATATATTTCATAATAGTACAGAATTTATTGTTCTTTTATTTGCAAGGAGATAGACCAGAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    78572 285 - 101219884 TCAATTATCTTCCTCAATTACTTTTTGTTTTGTTTTGTAATTATTATCCTATTTTGGTTTTCCTTTAGAATTGTGAAGTGTCTTCAATCAGAAATTGCAGAGAATATACAAATGAATAAGAATACGCTCTGCAACCAAACT--AAGTCTAGAA--AGTGTTTTGTTGTAGTTTATACCTTGAATCCAAAGTGCCATTTTATACAAGGCACTTGAGACATTTTCAAGCTCATATATTGCATAATAGTACAGAATTTATTGTTCTTTTATTTGCAAGGAGATAGACCAGAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200006 285 -    785044 TCAATTATCTTCCTCAATTACTTTTTGTTTTGTTTTGTAATTATTATCCTATTTTGGTTTTCCGTTAGAATTGTGAAGTGTCTTCAATCAGAAATTGCAGAGAATATACAAATGAATAGGAATACACTCTGCAATCAAACT--AGATCTAGAA--AGTGTTTTGTTGTAGTTTATACCTTGAATCCAAAGTGCCATTTTATACAAGGCACTTGAGACATTTTCAAGCTCATATATTTCATAATAGTACAGAATTTATTGTTCTTTTATTTGCAAGGAGATAGACCAGAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           91592 285 -  10971483 TCAAATATCTTCCTCAATTACTTTTTGTTTTGTTTTGTAATTATTATCCTATTTTGATTTTTCTTTAGAATTGTGAAGTGTCTTCAATCAGAAATTGCAGAGAATATACAAATGAATAAGAATACAGTCTGCAATCAAACT--AGATCTAGAA--AGTGTTTTGTTGTAGTTTATACCTTGAATCCAAAGTGCCATTTTATACAAGGCACTTGAGAAATTTTCAAGCTCATATATTTCATAATAGTACAGAATTTATTGTTCTTTTATTTGCAAGGAGATAGACCAGAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10943862 285 -  13128814 TCAATTATCTTCCTCAATTCCTTTTTGTTTTGTTTTGTAATTATTATCCTATTTTGTTTCTCCTTCAGAATTGTAAAATATCTTGAATCAGAAATTGCAGAGAATATATAAATAAGTAAGAATGCACTCTGCAATCAAACT--AGATCGAGAA--AGTGTTTTATTATAGTTTATACCTGGAATTTGAAGCGCCATTTTATACAAAGCATTCAAGAAATTTTCCAGCTCACATATTTCATAATAGTACAGAATTTATCGTTCTTTCATTTGCAATGAGATAGACCAGAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7674977 285 +  14377064 TCAATTATCTCCCCCAATTCCTttttgttttgttttgtaattattatcctattttgtttCTCCTTTAGAATTGTAAAATATCTTGAACCAGAAATTGCAGAGAATATATAAATAAGTAAGAATGCACTCTGCAATCAAACT--AGATCTAGAA--AGTGTTTTGTTATAGTTCATACCTGGAATTTGAAATGCCATTTTATACAAAGCATTTGATAAATTTTCCAGCTCACATAGTTCATAATAGTACAGAATTTATCGTTTTTCTATTTGCAAGGAGATAGGCCAGAT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4142677 285 -   9889416 TCAATTATCTTCCTCAATTCCTTTTTGTTTTGTTTTGTAATTATTATCCTATTGTGTTTCTCCTTTAGAATTGTAAAATATCTTGAATCAGAAATTGCAGAGAATATATAAATAAGTAAGAATGCTCTCTGCAATCAAACT--AGATCTAGAA--AGTGTCTTGTTACAGTTTATACCTGGAATTCGAAGCGGCATTGTATACAAAGCATTTGAGAAATTTTCCAGCTCACATATTTCATAATAGTACAGAATTTATTGTTCTTTTATTTGCAAGGAGATAGACCAGAT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30893873 282 -  47401472 TCAATTATCTTCCTCAAtttctttttgttttgttttgtaattattattctattttggttcttctttagaattgtGAAATATCTTGAATCACACAATGCAGAGACTATATAAATAAGTGAGAATGCACCCTGCCATAAGGCT--AGATCTGGAA--AGTGTCTTGTTATAGATTATACCTTGAATTCTAAGTACCATTTTATTCAAGGCACATGAAGCATTTTCCAGCTCATATATTTCACAACAGTACAGAATTTA---TTCCTTTAGTTGGAAAGAGATGGAGCAGAT
i micMur3.chr31                C 0 C 0
s otoGar3.GL873528              20773756 277 +  38779656 TCAATTATCCTCCTCAATTTCTTTTTCTTTTATTTTGCAATTATTATTCTATTTCAGTTTTCTTTTAGAATTGTGAAATATCTTGAATCAGAAAATGTAAACA----ATAAATGAGTGAGCATGCGGCAGGCCAGAA-ACT--AGATCTGGAA--AATGTTTTGTTATAGATTATGCCTTAAATTCCAAGTACCATTTTATTCAAAACTCATGAAGCATTTTCCAGGTCATATAGTTCACAATGGTACAGAATTTA---TTATTTTACTTGGAAGGAGATAGAGGGGAT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22720895 253 -  98207768 TCAAATATCTTGTTCAA----------TTTCATTTTCTAATTATCACTTTATTTTGTTTATTTTCTAGAATTATACGATATCTTGAATCATAGAAGAGAGGGAATAAATAAA-------GAGTTC--------ATAAAAC------TCTGGAC--ATTGTTTTATTATAACTTATACTTT-AATTTGAAGCATTATGTTATTCAAAACACATGAAGCCGTTCCTAGCTCATTTATTTCACTGCAGTGTAGGATTT-TTGTT-TTCCATCTGAAAGGAGATGCAGCAGAT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28810771 270 -  39895921 TCAATTATCATCCTCAATTTCTTTTTGTTTTGTTTTGTAATTATTATTCTATTTTGGTTCTCCTTTAGAATTGTGAAATATCTTGAATCGGAAAATGCAGAGA--------ATGAGAGACAATGCCTTCTATCATAAAACT--GAATCTGGAAAGAGTATTTTGTTTTAGATTATACCTTGAATTCAAAGCACAATTTTATTGAAAGC---------ATTTTCTAGCTCCTACATTTCACAACACTATAATATTTATGGTACTTTTATTTGGAAGGAGATTCAGCAGAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6703953 279 +   6883506 TCAATTATCCTCATCAATTTCTTTTTGTTTTGTTTTGTAATTATTATTCTATTTTTGTT---CTTTAGAATTGTGAATTATCTTGAATCAAAAGAGGCAGAGAATCTATAAACGAATCTAAATATACACTGACATAAACCTGGAAATCTGGAAAAAGTATTTTGTTATAGATTATACCTTGAAATTGAAGTGCCATT-TATTCAAAGCAAGTGAACCATTTTTCAGCTTATATGCTTCTCAATGGTATAGGATTTATT----CTTTATTTGGAAGGAGATAGGGAAT--
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1          100135 366 +   1229009 I

a score=26113.000000
s hg38.chr14_GL000009v2_random    201122 5 +    201709 -AAAAT
s panTro5.chr9                  41889390 5 + 116767853 -AAAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855221 5 + 205426864 -AAAGG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           14912 5 +  12760026 -AAAGG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128285 5 -  86207423 -AAAAG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284321 5 - 204787373 -AAAGG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183505 5 - 192460366 -AAAGG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          202953 5 -  11645122 -AAAGG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188109 5 -   6739814 -AAAGG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    78857 5 - 101219884 -AAAGG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200291 5 -    785044 -AAAGG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           91877 5 -  10971483 -AAAGG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944147 5 -  13128814 -AAAGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675262 5 +  14377064 -AGAGG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4142962 5 -   9889416 -AAAGG
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30894155 4 -  47401472 -AAAT-
i micMur3.chr31                C 0 I 1
s eulFla1.LGHW01000695v1          100501 4 +   1229009 -AAAT-
i eulFla1.LGHW01000695v1       I 366 I 494
s otoGar3.GL873528              20774033 4 +  38779656 -AAAT-
i otoGar3.GL873528             C 0 I 1
s mm10.chr16                    22721148 5 -  98207768 -GAATG
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28811041 5 -  39895921 -GAATG
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6704232 5 +   6883506 AAAAG-
i dasNov3.JH568778             C 0 C 0

a score=1015503.000000
s hg38.chr14_GL000009v2_random    201127  92 +    201709 ATCACTTTATTTTTTACAGTG-------TTGACTTTGA----TATTCTAAACTTGTCAG----TTTATACAGATT--AA-------TGAAGACTCCGTACATGTAAAATTCACTA--T
s panTro5.chr9                  41889395  92 + 116767853 ATCACTTTATTTTTTACAGTG-------TTGACTTTGA----TATTCTAAACTTGTCAG----TTTATACAGATT--AA-------TGAAGACTCCGTACATGTAAAATTCACTA--T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855226  92 + 205426864 ATCACTTCATTTCTTACAGTG-------TTGACTTTGG----TATTCTAAACTTGTCAG----TTTATACAGATT--AA-------TGAAGACTCCATACATGTAAAATTCACTA--T
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           14917  92 +  12760026 ATCACTTTATTTCTTACAGTG-------TTGACTTTGA----TATTCTAAACTTGTCAG----TTTATACAGATT--AA-------TGAAGACTCCATACATGTAAAATTCACTA--T
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128290  84 -  86207423 ATCACTTTATTTCTGACAGTG-------TTGACTT------------TAAACTTGTCAG----TTTATACAGATT--AA-------TGAAGACTCCGTACATGTAAAATTCACTA--T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284326  92 - 204787373 ATCACTTTATTTCTTACAGTG-------TTGACTTTGA----TATTCTAAACTTGTCAG----TTTATACAGACT--AA-------TGAAGACTCCATACATGTAAAATTCACTA--T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183510  92 - 192460366 ATCACTGTATTTCTTACAGTG-------TTGACTTTGA----TATTCTAAACTTGTCAG----TTTATACAGACT--AA-------TGAAGACTCCATACATGTAAAATTCACTA--T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          202958  92 -  11645122 ATCACTGTATTTCTTACAGTG-------TTGACTTTGA----TATTCTAAACTTGTCAG----TTTATACAGACT--AA-------TGAAGACTCCATACATGTAAAATTCACTA--T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188114  88 -   6739814 ATCACTTTATTTCTTACAGTG-------TTGACTTTGA----TATTCTAAACTTGTCAG----TTTATACAGACT--AA-------TGAAGA----ATTTATGTAAAATTCACTA--T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    78862  92 - 101219884 ATCACTGTATTTCTTACAGTG-------TTGACTTTGA----TATTCTAAACTTGTCAA----TTAATACAGACT--AA-------TGAAGACTCTATACATGTAAAATTCACTA--T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200296  88 -    785044 ATCACTTTATTTCTTACAGTG-------TTGACTTTGA----TATTCTAAACTTGTCAG----TTTATACAGACT--AA-------TGAAGAATTT----ATGTAAAATTCACTA--T
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           91882  92 -  10971483 ATCACTTTATTTCTTACAGTG-------TTGACTTTGA----TATTCTAAACTTGTCAG----TTTATACAGACT--AA-------TGAAGACTCCATATATGTAAAATTCACTA--T
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944152 100 -  13128814 ATAACTTTATTTCTCATAGTA-------TTGTCTTTGA----TATTCTAAACTCGTCAG----TTTATACAGATT--AAGTC-TTATGAAGTCTCTGTACATGTAAAATTCACTAGGt
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675267 101 +  14377064 ATAACTTTATTTCTCATAGTG-------TTGACTTTGA----TATTCTAAACTCGTCAG----TTTATACAGATT--AAGTCTTTTTGAAGTCTCTGTACATGTAAAATGCACTATGC
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4142967  99 -   9889416 ATCACTTTATTTCTTACAGTG-------TTGACTTTGA----TATTCTAAACTCATCAG----TTTATACAGATT--AAGTCTTTATGAAGTCTCTGTACATGTAAAATTCACTC--T
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30894160  92 -  47401472 ATCACTTTATTTCTTGTAGTG-------TTGACTTGGA----TATTCTAAACTTGTCAA----TTCATATGGATT--AA-------TGAAAACTCTTTACATGTAAAATTCACTA--T
i micMur3.chr31                I 1 I 174
s otoGar3.GL873528              20774038  92 +  38779656 ATCACTGTATTTCTTATACTG-------TTGACTTTGA----TATTCTAAACTTGTCAA----TGTATATGGATT--AA-------TGAAAACTCTTTACACGTAAAATTCACTA--T
i otoGar3.GL873528             I 1 C 0
s mm10.chr16                    22721153  98 -  98207768 ATAA-----------ACAATGTTGTGGTTTGACCTTGATTTTTTTTTTAAACCTGAAAGATATTTTATttttattcaaa-------taagttcttctctcatacaatatatccca--a
i mm10.chr16                   C 0 I 4
s canFam3.chr31                 28811046  92 -  39895921 ATCACTTTATTTCTTACATTT-------TTAACTTGGA----TGTTCTAAACTTGTCAC----GTTATATGGATT--AG-------TAGAGAGTCTTTACAAGTAAAATATACAA--T
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6704237  85 +   6883506 ATGACATT-----TTAAAAAA-------TTAACTTTGA----TATATTAAGCTTGTTTGA---AGTATATGAATT--AA-------TGAAGGCCCCTTAAATGTAAAATTTGT-----
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1          100505 494 +   1229009 I

a score=-17615.000000
s hg38.chr14_GL000009v2_random    201219 12 +    201709 A---A----------TT-TTTTT-------TC--T
s panTro5.chr9                  41889487 11 + 116767853 A---A-----------T-TTTTT-------TC--T
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855318 12 + 205426864 A---A----------TT-TTTTT-------TC--T
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15009 11 +  12760026 A---A-----------T-TTTTT-------TC--T
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128374 19 -  86207423 A---A----------TT-TTTTTTCTGGTATC--T
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284418 11 - 204787373 A---A-----------A-TTTTT-------TC--T
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183602 11 - 192460366 A---A-----------A-TTTTT-------TC--T
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203050 11 -  11645122 A---A-----------A-TTTTT-------TC--T
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188202 11 -   6739814 A---A-----------A-TTTTT-------TC--T
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    78954 12 - 101219884 A---A-----------ATTTTTT-------TC--T
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200384 11 -    785044 A---A-----------A-TTTTT-------TC--T
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           91974 12 -  10971483 A---A-----------TTTTTTT-------TC--T
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944252 25 -  13128814 atatatatatatatttt-ttttt-------tC--T
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675368 14 +  14377064 ATATA-----------T-TTTTT-------TC--T
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4143066 14 -   9889416 ATGTA-----------T-TTTTT-------TC--T
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20774130 13 +  38779656 --------------CCT-TTTTT-------ACAGT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22721255 12 -  98207768 -------------aatt-ttctg-------tc--t
i mm10.chr16                   I 4 I 1232
s canFam3.chr31                 28811138 16 -  39895921 ---------CCTTTTTT-TTTTT-------TC--T
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6704322 12 +   6883506 -----------AATTAA-TTTTT-------T----
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30894252 174 -  47401472 I
e eulFla1.LGHW01000695v1          100505 494 +   1229009 I

a score=507480.000000
s hg38.chr14_GL000009v2_random    201231 94 +    201709 --GGTATGAGAATACAAACAAATA---------GTA-ACTACAT--AAC--CAAACAGGTAAAG-----TAAAAAT-------ATACAATAGCTTGAC----aaaaaaaaaaagaaga-agaaaaaa
s panTro5.chr9                  41889498 88 + 116767853 --GGTGTGACAGTCCAAACAAATA---------GTA-ACTACAT--ACC--CAAACAGGTAAAG-----TAAAAAT-------ATACAATAGCTTG----------aaaaaaaaaaga-agaaaaaa
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855330 97 + 205426864 --GATATGAGAGTCCAAACAAATA---------GTA-ACTACAT---TT--CAAACAGGTAAAG-----TAAAAAT-------ATACAATAGCTTGACaaaaaaaaaaaagaaagaaa-ggaaaaaa
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15020 95 +  12760026 --GATATGAGAGTCCAAACAAATA---------GTA-ACTACAT---TT--CAAACAGGTAAAG-----TAAAAAT-------ATACAATAGCTTGAC--aaaaaaaaaaaaaagaaa-agaaaaaa
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128393 95 -  86207423 --GGTATAAGAGTCCAAACAAATAGTCAAACAGGTA-ACTACAT--ATT--CAAACACGTAAAG-----TAAAAAT-------ATACAATAGCTTGAC------------AAAAAAGA-AGAAAAAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284429 81 - 204787373 --GGTATGAGAGTCAAAACAAATA---------GTA-ACTACAT--GTT--CAAACAGATAAAG-----TAAAAAT-------ATGCAATAGCTAGAC-----------------AGG-AAAAAAAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183613 82 - 192460366 --GGTATGAGAGTCAAAACAAATA---------GTA-ACTACAT--GTT--CAAACAGATAAAG-----TGAAAAT-------ATGCAATAGCTAGAC-----------------AGGAAAAAAAAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203061 82 -  11645122 --GGTATGAGAGTCAAAACAAATA---------GTA-ACTACAT--GTT--CAAACAGATAAAG-----TGAAAAT-------ATGCAATAGCTAGAC-----------------AGGAAAAAAAAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188213 81 -   6739814 --GGTATGAGAGTCAAAACAAATA---------GTA-ACTACAT--ATT--CAAACAGATAAAG-----TAAAAGT-------ATGCAATAGCTAGAC-----------------AGG-AAAAAAAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    78966 81 - 101219884 --GGTATGAGAGTCAAAACAAATT---------GTA-ACTACAT--ATT--CAAACAGATAAAG-----TAAGAAT-------ATGCAATAGCTAGAC-----------------AGG-AAAAAAAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200395 81 -    785044 --GGTATGAGAGTCGAAACAAATA---------GCA-ACTACAT--ATT--CAAACAGATAAAG-----TAAAAGT-------ATGCAATAGCTAGAC-----------------AGG-AAAAAAAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           91986 81 -  10971483 --GGTATGAGAGTGAAAACAAATA---------GTA-ACTACAT--ATT--CAAACAGATAAAG-----TAAAAAT-------TTGCAATAGCTAGAC-----------------AGG-AAAAAAAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944277 79 -  13128814 --GGTATGAGAGGGCAAATAAATA---------ATA-ACTATAT--ATT--CAAACAGGTAAAG-----TAAGCAT-------TTGCAATAGCTTGAC-----------------AAA-AAA--TAA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675382 76 +  14377064 --GGTATGACAGTGT-----AATA---------ATA-ACTATAT--ATT--CAAACAGGTAAAG-----TAAACAT-------TTGCAATAGCTTGAC-----------------AAA-AAAATTAA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4143080 77 -   9889416 --GGTTTGAGAGTGGAAATA---A---------ATA-ACTATAT--ATT--CAAACAGGTAAAG-----TAAACAT-------TCACAATAGCTTGAC-----------------AGA-AAAA-TAA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20774143 82 +  38779656 --GGTATAAGGATACAAATAGATG---------GCAGAAAATAT--ACA--CAAATATCTCAAGA-ACCTAAAAA------------AATGACTTGGT----------------AAGA-AAAAAAAA
i otoGar3.GL873528             C 0 C 0
s canFam3.chr31                 28811154 83 -  39895921 --GGCTAAAGAATGTAAACA-------------GTA-AGTACAC--TTTTACAAACAGGTAAAAA----TAAAAACATCTTAAATACAATTAGTTGGC-----------------CAA-AAAA----
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6704334 83 +   6883506 GTTCCCCCAAAAGACAAACTAATA---------GTA-ACTACATATATC--CAAACAGGTTAGAATAATTAAAAAA-------TTCTGGGAATTAGGA-----------------AGA-A-------
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22721267 1232 -  98207768 I
e micMur3.chr31                 30894252 174 -  47401472 I
e eulFla1.LGHW01000695v1          100505 494 +   1229009 I

a score=853012.000000
s hg38.chr14_GL000009v2_random    201325 80 +    201709 gaaaCCCCTATACATTCCTTAACATTCT--------AAATCTC-TGAGGACAAAATTGGATTCAAAAGAAACATTTCTCGTGGGCAGGG
s panTro5.chr9                  41889586 80 + 116767853 gaaaCCCCTATACATTCCTTAACATTCT--------AAAACTC-TGAGGAAAAAATTGGATTCAAAAGAAACATTTCTGGTGGGCAGGG
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855427 80 + 205426864 gaaaCCCCTATACATGCCTTAACATTCT--------TAAACTC-TGAGGACCAAATTGGATTCAAAAGAAACATTTCTGGTGGGCAGGG
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15115 80 +  12760026 gaaaCCCCTGTACATGCCTTAACATTCT--------TAAACTC-TGAGGACCAAATTGGATTCAAAAGAAACATTTCTGGTGGGCAGGG
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128488 80 -  86207423 GCAACCCCTATACATGCCTTAACATTCT--------TAAACTC-TGAGGACCAAATCAGATTCAAAAGAAATATTTCTGGTGGGCAGGG
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284510 80 - 204787373 GAAACCCTTACACATGCCTTAACATTCT--------TAAACTC-TGAGGACCAAATTGGATTCAAAAGAAACATTTCTGGTGGGCAGGG
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183695 80 - 192460366 GAAACCCTTACACATGCCTTAACATTCT--------TAAACTC-TGAGGACCAAATTGGATTCAAAAGAAACATTTCTGGTGGGCAGGG
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203143 80 -  11645122 GAAACCCTTACACATGCCTTAACATTCT--------TAAACTC-TGAGGACCAAATTGGATTCAAAAGAAACATTTCTGGTGGGCAGGG
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188294 80 -   6739814 GAAACCCTTACACATGCCTTAACATTCT--------TAAACTC-TGAGGACCAAATTGGATTCAAAAGAAACATTTCTGGTGGGCAGGG
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    79047 80 - 101219884 GAAACCCTTACACATGCCTTAACATTCT--------TAAACTC-TGAGGACCAAATTGGATTCAAAAGAAACATTTCTGTTAGGCAGGG
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200476 80 -    785044 GAAACCCTTACACATGCCTTAACATTCT--------TAAACTC-TGAGGACCAAATTGGATTCAAAAGAAACATTTCTGGTGGGCAGGG
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           92067 80 -  10971483 GAAACCCTTACACATGCCTTAACATTCT--------TAAACTC-TGAGGACCAAATTGGATTCAAAAGAAACATTTCTGGTGGGCAGGG
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944356 80 -  13128814 GAAACCCCTTTACATGCCTTAACATTCT--------TAAACTC-TGAGGAGCAAATTGGATTCAAAAGAAACATTTCTGGTGGGCAGGG
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675458 80 +  14377064 GAAACCCTTTTACATGCCTTAACATTCT--------TAAACTC-TGAGGAACAAATTGGATTCAAAAGAAACATTTCTGGTGGGCAGGG
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4143157 80 -   9889416 GAAACCCCTTTACATGCCTTAACATTCT--------TAAACTC-TGAGGAACAAATTGGATTCAAAAGAAACATTTCTGGTGGGCAGGG
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20774225 83 +  38779656 GAACCCACTAAATATGCCTTAATGTTCTGAATAGCAAAATATC-TGAAGAGCAAAATAAATTGAGAACCAACATTTCTGAAGGA-----
i otoGar3.GL873528             C 0 I 1
s mm10.chr16                    22722499 68 -  98207768 gggactcttatggaT---TTAAAATCTT--------AACATTT-----GGCCAACACTCATTAAAAATAAGCATCTATAGAGCA-----
i mm10.chr16                   I 1232 C 0
s canFam3.chr31                 28811237 76 -  39895921 GAAACCCATAAGCATGCCTTAAAATTCT--------TACTATCTTGAGAACCAAAATGGATTGAAAACAAATATTTTTAGGGAA-----
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6704417 78 +   6883506 AATACTCTGAAACATGCCTTAAAATTCT--------TAATATCTTAAGGACAAAAATGGATAGAAAAGAAACATTTCTGGTGAAAA---
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30894252 174 -  47401472 I
e eulFla1.LGHW01000695v1          100505 494 +   1229009 I

a score=904286.000000
s hg38.chr14_GL000009v2_random    201405 78 +    201709 AAAGGGCT--AAAAAT-----CTAAAGTATATAATAAGTAAATTCCTCATTGCTATAAAATATATGACCAGCATGACATTTCAAT
s panTro5.chr9                  41889666 78 + 116767853 AAAGGGCT--AAAAAG-----CTGAAGTATATAATAAGTAAATTCCTCATTGCTATAAAATATATGAGCAGCATGACATTTCAAT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855507 78 + 205426864 AAAGGGCT--AAAAAG-----CTGAAGTATATAATAAATAAATTCCTCATTGCTATCAAATATATGACCAGCATGACATTTCAAT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15195 78 +  12760026 AAAGGGCT--AAAAAG-----CTGAAGTATATAATAAGTAAATTCCTCATTGCTATCAAATATATGACCAGCATGACATTTCAAT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128568 78 -  86207423 AAAGGGCT--AAAAAG-----CTAAAGTATATAATAAGTAAATTCCTCATTGCTATCAAATATATGACCAGCATGACATTTCAAC
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284590 76 - 204787373 AAAGGACT--GAAAAG-----CTAAAGTACATAATAAGTAAATTCCTCATTGCTATCAA--ATATGACCAGCACGACATTTCCAT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183775 76 - 192460366 AAAGGACT--GAAAAG-----CTAAAGTATGTAATAAGTAAATTCCTCATTGCTATCAA--ATATGACCAGCACGACATTTCCAT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203223 76 -  11645122 AAAGGACT--GAAAAG-----CTAAAGTATGTAATAAGTAAATTCCTCATTGCTATCAA--ATATGACCAGCACGACATTTCCAT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188374 76 -   6739814 AAAGGACT--GAAAAG-----CTAAGGTATATAATAAGTAAATTCCTCATTGCTATCAA--ATATGACCAGCACGACATTTCCAT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    79127 76 - 101219884 AAAGGACT--GAAAAG-----CTAAAGTATATAATAAGTAAATTCCTCATTGCTATCAA--ATATGACCAGCACGACATTTCCAT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200556 76 -    785044 AAAGGACT--GAAAAG-----CTAAGGTATATAATAAGTAAATTCCTCATTGCTATCAA--ATATGACCAGCACGACATTTCCAT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           92147 76 -  10971483 AAAGGGCT--GAAAAG-----CTAAAGTACGTAATAAGTAAATTCCTCATTGCTGTCAA--ATGTGACCAGCACGACATTTCCAT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944436 78 -  13128814 AAAGGGCT--AAAAAG-----CTAAAGTGTATGATACTTAAATTCCTCATTACTGTCAGATATATGACCAGCATGATATTTCAAT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675538 78 +  14377064 AAAGGGCT--AGAAAG-----CTAAAGTATATAATAATTAAATTCCTCATTGCTGTCAGATATATGACCAGCATGATATTTCAAT
i cebCap1.NW_016107322v1       C 0 I 181
s aotNan1.NW_018487195v1         4143237 78 -   9889416 AAAGGGCT--AAAAGG-----CTAAAGTATATGATAAGTAAATTCCTCATTGCTATCAGATATATGATCAGCATGATATTTCAAT
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30894426 78 -  47401472 AAAGGGCA--GAAAAG-----CTAAAATATATGATAAATAAATTCCTCATTGCTATCAGATACATGACTAGCATGGCATTTCAAT
i micMur3.chr31                I 174 I 56
s otoGar3.GL873528              20774309 73 +  38779656 AAGGGGGA--GAAAAG-----CTAAAATACATGGTAAGTCAATTCCTCAC-----TCAGATAAAGGGCTAGCAGGGCACTTCAAT
i otoGar3.GL873528             I 1 C 0
s mm10.chr16                    22722567 82 -  98207768 AAATATTT--GAAAAATGCCCCTAAAATATACTACAAATATTCTACTAAT-ATGATTAGATATCCAGCAAGCATGACTTTCTAGT
i mm10.chr16                   C 0 I 7
s canFam3.chr31                 28811313 79 -  39895921 AAAAGACT--AAAAAA----ACTGAAATATATGATAAGCAAATTCCTCATTGCTATCCAATATATGACTAGCCTGGCATTTCAAT
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6704495 78 +   6883506 TAAAGACTGAGAAAAG-----CTAAAATAAATAACAAG-AAATTCCTCATTGCTGCCAGATATATCACTAGCATGGTATTTCAT-
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1          100505 494 +   1229009 I

a score=280563.000000
s hg38.chr14_GL000009v2_random    201483 38 +    201709 GCATGTTCAAGTTTTCTG-AAGAAA-GTTCTAGGATAATA
s panTro5.chr9                  41889744 38 + 116767853 ACATGTTCAAGTTTTCTG-AAAAAA-GTTCTAGGATAATA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855585 38 + 205426864 ACATATGAAAGTTTTCTT-TAAAAA-GTTCTAGGATAATA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15273 38 +  12760026 ACATGTTAAAGTTTTCTG-AAAAAA-GTTCTAGGATAATA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128646 38 -  86207423 ACATGTTAAAGTTTTCTG-AAAAAA-GTTCTAGGATAATA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284666 38 - 204787373 ACACGTTAAACTTTTCTG-AAAAAA-GTTCTAGGATAATA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183851 38 - 192460366 ACACGTTAAACTTTTCTG-AAAAAA-GTTCTAGGATAATA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203299 38 -  11645122 ACACGTTAAACTTTTCTG-AAAAAA-GTTCTAGGATAATA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188450 39 -   6739814 ACACGTTAAACTTTTCTGAAAAAAA-GTTCTAGGATAATA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    79203 38 - 101219884 ACACGTTAAACTTTTCTG-AAAAAA-GTTCTAGGATAATA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200632 39 -    785044 ACACGTTAAACTTTTCTGAAAAAAA-GTTCTAGGATAATA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           92223 38 -  10971483 ACATGTTAAACTTTTCTG-AAGAAA-GTTCTAGGATAATA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944514 35 -  13128814 ACATGTTAAGCTTTTCTG-AAAAAA----CTAGGAGAATA
i saiBol1.JH378168             C 0 I 182
s aotNan1.NW_018487195v1         4143315 35 -   9889416 ACATGTTAAGCTTTTCTG-AAAAAA----CTAAGAGAATA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20774382 35 +  38779656 AAGTGCGAAATTTTGCTA-GAAAAACATCCTAGGAA----
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22722656 33 -  98207768 ACATAT-----TTTTCTG-AAAAAA-AAATATGAATGGTA
i mm10.chr16                   I 7 C 0
s canFam3.chr31                 28811392 38 -  39895921 AAGTGCTAAATTTTTTTC-TGAAAA-TATACTTGATGGTA
i canFam3.chr31                C 0 C 0
s dasNov3.JH568778               6704573 36 +   6883506 ATGTGCTAAATTTTGATG---AAAA-CTTTTAAGATGATG
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30894504 56 -  47401472 I
e eulFla1.LGHW01000695v1          100505 494 +   1229009 I
e cebCap1.NW_016107322v1         7675616 181 +  14377064 I

a score=103873.000000
s hg38.chr14_GL000009v2_random    201521 9 +    201709 GGATTTCAA
s panTro5.chr9                  41889782 9 + 116767853 GGATTTCAA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855623 9 + 205426864 GGATTTCAA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15311 9 +  12760026 GGATTTCAA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128684 9 -  86207423 GGATTTCAA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284704 9 - 204787373 GGATTTCAA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183889 9 - 192460366 GGATTTCAA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203337 9 -  11645122 GGATTTCAA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188489 9 -   6739814 GGATTTCAA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    79241 9 - 101219884 GGATTTCAA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200671 9 -    785044 GGATTTCAA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           92261 9 -  10971483 GGATTTCAA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944731 9 -  13128814 GGATTTCAA
i saiBol1.JH378168             I 182 C 0
s cebCap1.NW_016107322v1         7675797 9 +  14377064 GGATTTCAA
i cebCap1.NW_016107322v1       I 181 C 0
s aotNan1.NW_018487195v1         4143350 9 -   9889416 GGATTTCAA
i aotNan1.NW_018487195v1       C 0 I 141
s otoGar3.GL873528              20774417 9 +  38779656 GGACTCTGA
i otoGar3.GL873528             C 0 I 5
s mm10.chr16                    22722689 7 -  98207768 GGGCTTC--
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28811430 9 -  39895921 GAATTTCAA
i canFam3.chr31                C 0 I 5
s dasNov3.JH568778               6704609 6 +   6883506 ---ATACAA
i dasNov3.JH568778             C 0 C 0
e micMur3.chr31                 30894504 56 -  47401472 I
e eulFla1.LGHW01000695v1          100505 494 +   1229009 I

a score=20004.000000
s hg38.chr14_GL000009v2_random    201530  7 +    201709 CTTTTGA---------
s panTro5.chr9                  41889791  7 + 116767853 CTTTTGA---------
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855632  7 + 205426864 CTTCTGA---------
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15320  7 +  12760026 CTTCTGA---------
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128693  7 -  86207423 CTTTGGA---------
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284713  5 - 204787373 CTC--AA---------
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183898  7 - 192460366 CTCTTGA---------
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203346  7 -  11645122 CTCTTGA---------
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188498  7 -   6739814 CTCTTGA---------
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    79250  7 - 101219884 CTCTTGA---------
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200680  7 -    785044 CTCTTGA---------
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           92270  7 -  10971483 CTCTTGA---------
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944740  7 -  13128814 CTTTTGA---------
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675806  7 +  14377064 CTTTTAA---------
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4143500  7 -   9889416 CTTTTGA---------
i aotNan1.NW_018487195v1       I 141 C 0
s otoGar3.GL873528              20774431  5 +  38779656 CCCGC-----------
i otoGar3.GL873528             I 5 C 0
s canFam3.chr31                 28811444  4 -  39895921 TTCC------------
i canFam3.chr31                I 5 C 0
s dasNov3.JH568778               6704615 15 +   6883506 -TTTCAAAAGAGATAC
i dasNov3.JH568778             C 0 C 0
e mm10.chr16                    22722696  0 -  98207768 C
e micMur3.chr31                 30894504 56 -  47401472 I
e eulFla1.LGHW01000695v1          100505 494 +   1229009 I

a score=1277193.000000
s hg38.chr14_GL000009v2_random    201537 117 +    201709 TTCTACAGATATCA---TTCTTGTGATTGGTATGGGAGAATCATCCTCTCCATGTATTAGTGGATTCAAAT---GAAAAAAAAAAAAATCAGGCAGCTAGTTCCTTTCCAAGAAGCCTTAGAG---
s panTro5.chr9                  41889798 112 + 116767853 TTCTACAGATATCA---TTCTTGTGATTGGTATGGTAGAATCATCCTCTTCATGTATTAGTGGATTCAAAT---G-----AAAAAAAATCAGGCAGCTAGTTCCTTTCCAAGAAGCCTTAGAG---
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855639 112 + 205426864 TTCTACAGATATCA---TTCTTGTGATTGGTATGGGAGAATCATCCTCTTCATGTATCAGTGGATTCAAAT---G-----AAAAAAAATCAGGCAGCTAGTTCCTTTCCAAGAAGCCTTAGAG---
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15327 114 +  12760026 TTCTACAGATATCA---TTCTTGTGATTGGTGTGGGAGAATCATTGTCTTCATGTATCAGTGGATTCAAAT---G---AAAAAAAAAATCAGGCAGCTAGTTCCTTTCCAAGAAGCCTTAGAG---
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128700 112 -  86207423 TTCTACAGATACCA---TTCTTGGGATTGGTATGGGAGAATCATCCTCTTTATGTATGAGTGGATTCAAAT---G-----AAAAAAAATCAGGCAGCTAGTTCCTTTCCAAGAAGCCTTAGAG---
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284718 113 - 204787373 TTCTACAGACATCA---TTCTTGTGATTGATATGGGAGAATCATCCTCTTCATGTACTAGTGGATTCAAACA--A-----AAAAAAAATCAGGCAGCTAATTCCTTTCCAAGAAGCCTTAGAG---
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    183905 115 - 192460366 TTCTACAGACATCA---TTCTTGTGATTGATATGGGAGAATCATCCTCTTCATGTACTAGTGGATTCAAACAACA-----ACAAAAAATCAGGCAGCTAATTCCTTTCCAAGAAGCCTTAGAG---
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203353 115 -  11645122 TTCTACAGACATCA---TTCTTGTGATTGATATGGGAGAATCATCCTCTTCATGTACTAGTGGATTCAAACAACA-----AAAAAAAATCAGGCAGCTAATTCCTTTCCAAGAAGCCTTAGAG---
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188505 112 -   6739814 TTCTACAGACATCA---TTCTTGCGATTGATATGGGAGAATCATCCTCTTCATGTACTAGTGGATTCAAAC---A-----AAAAAAAATCAGGCAGCTAATTCCTTTCCAAGAAGCCTTAGAG---
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    79257 115 - 101219884 TTCTACAGACATCG---TTCTTGCGATTGATATGGGAGAATCATCCTCTTCATGTACTAGTGAATTCAAACAAAA-----AAAAAAAATCAGGCAGCTAATTCCTTTCCAAGAAGCCTTAGAG---
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200687 113 -    785044 TTCTACAGACATCA---TTCTTGCGATTGATATGGGAGAATCATCCTCTTCATGTACTAGTGGATTCAAAC--AA-----AAAAAAAATCAGGCAGCTAATTCCTTTCCAAGAAGCCTTAGAG---
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           92277 112 -  10971483 TTCTACAGACATCA---TTCTTGTGATTGATATGGGAGAATCATCCTCTTCATGTACTAGTGGATTCAAAC---A-----AAAAAAAATCAGGCAACTAATTCCTTTCCCAGAAGCCTTAGAG---
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944747 110 -  13128814 TTCTACAGATTTCA---ATCTTGTGACTGGTATGAGAGAATCATCTTCTTCATGTATTAGTGGATCCAAAT---G-------AAAAAATCAGGAAGTTTAATCCTTTCCAAGAAGCCTTAGAG---
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675813 110 +  14377064 TTCTACAAATTTCA---ATCTTGTGACTGGTATCAGAGAATCGTTCTCTTCATGTATTAGTGGATCCAAAT---G-------AAAAAATCAGGGAGTTTAATCCTTTCCAAGAAGCCTTAGAG---
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4143507 110 -   9889416 TTCCACAGATTTCA---TTCTTGTGACTGGTATGAGGGAATCATCCTCTTCACGTATTAGTGGATCCAAAT---G-------AAAAAATCAGAGAGTTTAATCCTTTCCAAGAAGGCTTAGAG---
i aotNan1.NW_018487195v1       C 0 C 0
s micMur3.chr31                 30894560 114 -  47401472 TTCTACAGATGTCA---TTCTTGTGACTGGTATGAAAGAATTGTTCTCTTCATTTATTAGTGGCTTCAAAT---G---GAAAAAAAAATCAGAGAGCTAAATCCTTTCCAAGAAGTCTTAGAG---
i micMur3.chr31                I 56 N 0
s otoGar3.GL873528              20774436 109 +  38779656 TTCTACAGATGCCA---TGCTTGTGATTGATACGAGAGTATTTTTCCCTTCATTTATTAGTGGATTCAAAT---G--------AAAAATCAGAGAGCTAAATCCTTTCCAAGGAGCCTTAGAG---
i otoGar3.GL873528             C 0 I 6
s mm10.chr16                    22722696 116 -  98207768 TTCTACAAACGTTATTTTTCTTTTGACTATTATCAGAGAATAGCCTTTTTCATTTGTTAGTGGATTCAAAA---G----AAAAAAAGAAAATTGAGCTAAATTCCTTTACAGAAGCAGCAGTC---
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28811448 106 -  39895921 TTCTACAAATACAA--TTTCTTGTGACTGGTA-AAGAGACTTGTCCTGTTAACTTATTAGCAGACTCAAAT---T-------AAGAAATC----CATTAAATTCTTACCAAGAAGACTTATAG---
i canFam3.chr31                C 0 I 4
s dasNov3.JH568778               6704630  98 +   6883506 TTCTGCAGAGATCA---TTCTAGTGACTGGTGCAAGAGTATTGTCCTCTT----TATTAGTGGATTCTAAA---G------AAAAAAATCAAGGATTT------------AGAAGATTTAGAGGAG
i dasNov3.JH568778             C 0 C 0
e eulFla1.LGHW01000695v1          100505 494 +   1229009 I

a score=2275.000000
s hg38.chr14_GL000009v2_random    201654 1 +    201709 A
s panTro5.chr9                  41889910 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855751 1 + 205426864 A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15441 1 +  12760026 A
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128812 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284831 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    184020 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203468 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188617 1 -   6739814 A
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    79372 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200800 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           92389 1 -  10971483 A
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944857 1 -  13128814 C
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675923 1 +  14377064 C
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4143617 1 -   9889416 C
i aotNan1.NW_018487195v1       C 0 C 0
s eulFla1.LGHW01000695v1          100999 1 +   1229009 G
i eulFla1.LGHW01000695v1       I 494 N 0
s otoGar3.GL873528              20774551 1 +  38779656 G
i otoGar3.GL873528             I 6 C 0
s mm10.chr16                    22722812 1 -  98207768 A
i mm10.chr16                   C 0 C 0
s dasNov3.JH568778               6704728 1 +   6883506 A
i dasNov3.JH568778             C 0 C 0
e canFam3.chr31                 28811554 4 -  39895921 I

a score=527739.000000
s hg38.chr14_GL000009v2_random    201655 45 +    201709 TTGTTGTACATAAAAAT---AGCCATAT-TTCTGATTC-AAATTTTAATT
s panTro5.chr9                  41889911 48 + 116767853 TTGTTGTACATAAAAATATGAGCCATAT-TTCTGATTC-AAATTTTAATT
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855752 48 + 205426864 TTGTTGTACATAAAAATATGAGCCATAT-TTCTGATTC-AAATTTTAAGT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15442 48 +  12760026 TTGTTGTACATAAAAATATGAGCTATAT-TTCTGATTC-AAATTTTAAGT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128813 48 -  86207423 TTGTCGCACATAAAAATATGATCCATAT-TTCTGATTC-AAACTTAAATT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284832 48 - 204787373 TTGTTGTACATAAAAATATGATCCATAT-TTCTGATTC-AAATTTTAATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    184021 48 - 192460366 TTGTTGTACATAAAAATATGATCCATAT-TTCTGATTC-AAATTTTAATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203469 48 -  11645122 TTGTTGTACATAAAAATATGATCCATAT-TTCTGATTC-AAATTTTAATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188618 48 -   6739814 TTGTTGTACATAAAAATATGATCCATAT-TTCTGATTC-AAATTTTAATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    79373 48 - 101219884 TTGTTGTACATAAAAATATGATCCATAT-TTCTGATTC-AAATTTTAATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200801 48 -    785044 TTGTTGTACATAAAAATATGATCCATAT-TTCTGATTC-AAATTTTAATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           92390 48 -  10971483 TTTTTGTACATAAAAATATGATCCATAT-TTCTGATTC-AAATTTTAATT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944858 48 -  13128814 TTGTTGTATGTAAAAATATAAGCCATAT-TTCTGACTC-AAATTTTAATT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675924 48 +  14377064 TTGCTGTACGTAAAAATATAAGCCATAT-TTCTGACTC-AAATTTTAATT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4143618 48 -   9889416 TTGTTGTATGTAAAAATATAAGCCATAT-TTCTGATTC-AAATTTTAATT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20774552 49 +  38779656 TTGTCATATATAAAAATATGAGCTATATATTTTTATTC-AAATTCTAATT
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22722813 44 -  98207768 ----TATTAAAAAAATTATGAGCTATTA-TCATGATTA-AAAATTTCATT
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28811558 35 -  39895921 TTGTTG--------------AGCTATAT-TGCTTATTCAAAATTCTGATT
i canFam3.chr31                I 4 C 0
s dasNov3.JH568778               6704729 48 +   6883506 CTGTTAAATATATAAATATGAGCAATAC-TGCTGATTC-AAATCTTAATT
i dasNov3.JH568778             C 0 N 0

a score=11849.000000
s hg38.chr14_GL000009v2_random    201700 1 +    201709 A
s panTro5.chr9                  41889959 1 + 116767853 A
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855800 1 + 205426864 A
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15490 1 +  12760026 A
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128861 1 -  86207423 A
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284880 1 - 204787373 A
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    184069 1 - 192460366 A
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203517 1 -  11645122 A
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188666 1 -   6739814 G
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    79421 1 - 101219884 A
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200849 1 -    785044 A
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           92438 1 -  10971483 A
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944906 1 -  13128814 A
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675972 1 +  14377064 A
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4143666 1 -   9889416 A
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20774601 1 +  38779656 A
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22722857 1 -  98207768 A
i mm10.chr16                   C 0 C 0
s canFam3.chr31                 28811593 1 -  39895921 A
i canFam3.chr31                C 0 N 0

a score=22552.000000
s hg38.chr14_GL000009v2_random    201701 2 +    201709 GA
s panTro5.chr9                  41889960 2 + 116767853 GA
i panTro5.chr9                 C 0 C 0
s panPan2.chr3                  77855801 2 + 205426864 GA
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15491 2 +  12760026 GA
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128862 2 -  86207423 GA
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284881 2 - 204787373 GA
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    184070 2 - 192460366 GA
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203518 2 -  11645122 GA
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188667 2 -   6739814 GA
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    79422 2 - 101219884 GA
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200850 2 -    785044 GA
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           92439 2 -  10971483 GA
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944907 2 -  13128814 GA
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675973 2 +  14377064 GA
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4143667 2 -   9889416 GA
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20774602 2 +  38779656 TA
i otoGar3.GL873528             C 0 C 0
s mm10.chr16                    22722858 2 -  98207768 GA
i mm10.chr16                   C 0 N 0

a score=46150.000000
s hg38.chr14_GL000009v2_random    201703 5 +    201709 GAATT
s panTro5.chr9                  41889962 5 + 116767853 GAATT
i panTro5.chr9                 C 0 N 0
s panPan2.chr3                  77855803 5 + 205426864 GAATT
i panPan2.chr3                 C 0 C 0
s gorGor5.CYUI01015020v1           15493 5 +  12760026 GAATT
i gorGor5.CYUI01015020v1       C 0 C 0
s nomLeu3.chr21                 42128864 5 -  86207423 GAATT
i nomLeu3.chr21                C 0 C 0
s rheMac8.chr2                 204284883 5 - 204787373 AAATT
i rheMac8.chr2                 C 0 C 0
s macFas5.chr2                    184072 5 - 192460366 AAATT
i macFas5.chr2                 C 0 C 0
s macNem1.NW_012010856v1          203520 5 -  11645122 AAATT
i macNem1.NW_012010856v1       C 0 C 0
s cerAty1.NW_012001605v1          188669 5 -   6739814 AAATT
i cerAty1.NW_012001605v1       C 0 C 0
s chlSab2.chr22                    79424 5 - 101219884 AAATT
i chlSab2.chr22                C 0 C 0
s manLeu1.NW_012099043v1          200852 5 -    785044 AAATT
i manLeu1.NW_012099043v1       C 0 C 0
s colAng1.NW_012123820v1           92441 5 -  10971483 AAATT
i colAng1.NW_012123820v1       C 0 C 0
s saiBol1.JH378168              10944909 5 -  13128814 AAATT
i saiBol1.JH378168             C 0 C 0
s cebCap1.NW_016107322v1         7675975 5 +  14377064 AAATT
i cebCap1.NW_016107322v1       C 0 C 0
s aotNan1.NW_018487195v1         4143669 5 -   9889416 AAATT
i aotNan1.NW_018487195v1       C 0 C 0
s otoGar3.GL873528              20774604 5 +  38779656 AAATC
i otoGar3.GL873528             C 0 C 0

a score=10500.000000
s hg38.chr14_GL000009v2_random    201708 1 +    201709 C
s panPan2.chr3                  77855808 1 + 205426864 C
i panPan2.chr3                 C 0 N 0
s gorGor5.CYUI01015020v1           15498 1 +  12760026 C
i gorGor5.CYUI01015020v1       C 0 N 0
s nomLeu3.chr21                 42128869 1 -  86207423 C
i nomLeu3.chr21                C 0 N 0
s rheMac8.chr2                 204284888 1 - 204787373 C
i rheMac8.chr2                 C 0 N 0
s macFas5.chr2                    184077 1 - 192460366 C
i macFas5.chr2                 C 0 N 0
s macNem1.NW_012010856v1          203525 1 -  11645122 C
i macNem1.NW_012010856v1       C 0 N 0
s cerAty1.NW_012001605v1          188674 1 -   6739814 C
i cerAty1.NW_012001605v1       C 0 N 0
s chlSab2.chr22                    79429 1 - 101219884 C
i chlSab2.chr22                C 0 N 0
s manLeu1.NW_012099043v1          200857 1 -    785044 C
i manLeu1.NW_012099043v1       C 0 N 0
s colAng1.NW_012123820v1           92446 1 -  10971483 C
i colAng1.NW_012123820v1       C 0 N 0
s saiBol1.JH378168              10944914 1 -  13128814 C
i saiBol1.JH378168             C 0 N 0
s cebCap1.NW_016107322v1         7675980 1 +  14377064 C
i cebCap1.NW_016107322v1       C 0 N 0
s aotNan1.NW_018487195v1         4143674 1 -   9889416 C
i aotNan1.NW_018487195v1       C 0 N 0
s otoGar3.GL873528              20774609 1 +  38779656 C
i otoGar3.GL873528             C 0 N 0

